Query 002286
Match_columns 942
No_of_seqs 1477 out of 4933
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 2E-110 4E-115 885.4 93.6 883 1-929 3-896 (1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-54 2.4E-59 535.0 83.2 703 29-799 148-886 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-54 2.1E-58 526.6 85.4 736 20-833 36-800 (899)
4 PRK11447 cellulose synthase su 100.0 4.4E-45 9.4E-50 444.9 75.4 652 37-778 25-739 (1157)
5 PRK11447 cellulose synthase su 100.0 7.8E-45 1.7E-49 442.7 74.5 622 83-785 28-706 (1157)
6 KOG2002 TPR-containing nuclear 100.0 3.1E-42 6.7E-47 367.1 73.2 583 110-764 146-764 (1018)
7 KOG4626 O-linked N-acetylgluco 100.0 1.4E-46 3E-51 378.6 37.7 463 37-611 45-508 (966)
8 KOG4626 O-linked N-acetylgluco 100.0 1.5E-45 3.2E-50 371.3 38.5 460 127-730 47-506 (966)
9 PRK09782 bacteriophage N4 rece 100.0 9.6E-40 2.1E-44 377.0 69.0 663 41-797 45-724 (987)
10 PRK09782 bacteriophage N4 rece 100.0 7.2E-37 1.6E-41 353.2 65.9 652 23-793 61-753 (987)
11 PLN03077 Protein ECB2; Provisi 100.0 2.4E-31 5.3E-36 317.7 69.5 669 35-833 46-721 (857)
12 TIGR00990 3a0801s09 mitochondr 100.0 7.3E-33 1.6E-37 317.5 52.5 445 84-594 128-577 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 9.1E-33 2E-37 316.7 53.2 436 129-625 128-574 (615)
14 KOG2076 RNA polymerase III tra 100.0 7.2E-31 1.6E-35 279.1 59.4 674 40-777 139-893 (895)
15 PLN03077 Protein ECB2; Provisi 100.0 6E-30 1.3E-34 305.7 65.6 640 25-779 69-720 (857)
16 KOG0495 HAT repeat protein [RN 100.0 7.7E-28 1.7E-32 245.4 66.5 599 107-791 264-892 (913)
17 KOG2076 RNA polymerase III tra 100.0 9.7E-29 2.1E-33 263.0 58.1 647 109-799 154-881 (895)
18 PRK10049 pgaA outer membrane p 100.0 1.8E-28 3.8E-33 285.8 48.2 435 114-597 2-465 (765)
19 KOG0495 HAT repeat protein [RN 100.0 7E-26 1.5E-30 231.2 60.0 602 33-748 278-885 (913)
20 PRK15174 Vi polysaccharide exp 100.0 1.5E-27 3.3E-32 271.6 46.5 329 348-744 48-382 (656)
21 PRK15174 Vi polysaccharide exp 100.0 2.5E-27 5.5E-32 269.8 47.2 340 109-476 57-402 (656)
22 PRK10049 pgaA outer membrane p 100.0 2.4E-27 5.2E-32 276.3 46.7 408 88-562 20-464 (765)
23 KOG0547 Translocase of outer m 100.0 5.6E-27 1.2E-31 231.7 34.4 427 130-624 117-568 (606)
24 KOG1127 TPR repeat-containing 100.0 4.5E-25 9.9E-30 235.8 50.1 644 108-791 472-1187(1238)
25 KOG0547 Translocase of outer m 100.0 2.9E-26 6.2E-31 226.8 34.6 440 87-592 112-570 (606)
26 PLN03218 maturation of RBCL 1; 100.0 8.1E-23 1.8E-27 238.8 64.5 545 144-779 353-909 (1060)
27 PRK14574 hmsH outer membrane p 100.0 5.8E-24 1.3E-28 241.4 51.4 466 123-627 29-518 (822)
28 PLN03218 maturation of RBCL 1; 100.0 1.5E-22 3.3E-27 236.5 64.2 543 113-744 356-910 (1060)
29 KOG2003 TPR repeat-containing 100.0 7.4E-25 1.6E-29 214.0 36.7 455 108-632 215-698 (840)
30 PRK14574 hmsH outer membrane p 100.0 7.8E-24 1.7E-28 240.3 50.7 441 107-596 47-521 (822)
31 KOG2003 TPR repeat-containing 99.9 5.2E-25 1.1E-29 215.1 32.0 480 129-689 202-708 (840)
32 KOG1127 TPR repeat-containing 99.9 6.3E-23 1.4E-27 219.6 49.9 599 130-790 564-1234(1238)
33 KOG1156 N-terminal acetyltrans 99.9 6.5E-23 1.4E-27 210.8 47.8 561 270-906 9-622 (700)
34 KOG1173 Anaphase-promoting com 99.9 1.4E-23 3E-28 212.3 41.8 506 168-796 22-535 (611)
35 PLN03081 pentatricopeptide (PP 99.9 1E-23 2.2E-28 245.9 47.0 428 270-780 125-558 (697)
36 PLN03081 pentatricopeptide (PP 99.9 2.4E-23 5.3E-28 242.8 49.8 463 129-705 88-558 (697)
37 KOG1173 Anaphase-promoting com 99.9 1.3E-23 2.8E-28 212.6 39.0 447 107-602 29-532 (611)
38 KOG1155 Anaphase-promoting com 99.9 7.8E-22 1.7E-26 194.5 44.8 449 41-558 79-540 (559)
39 KOG1155 Anaphase-promoting com 99.9 4.1E-22 8.8E-27 196.4 41.3 424 131-622 81-536 (559)
40 KOG1156 N-terminal acetyltrans 99.9 1.2E-20 2.6E-25 194.3 52.6 452 129-619 8-465 (700)
41 KOG1126 DNA-binding cell divis 99.9 8.6E-24 1.9E-28 219.0 27.6 312 81-411 315-626 (638)
42 KOG0548 Molecular co-chaperone 99.9 1.2E-22 2.7E-27 205.1 34.2 438 107-618 15-485 (539)
43 KOG4162 Predicted calmodulin-b 99.9 1.7E-19 3.8E-24 189.6 54.1 414 312-788 291-792 (799)
44 KOG1126 DNA-binding cell divis 99.9 3.6E-23 7.8E-28 214.4 26.2 304 378-749 319-626 (638)
45 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3E-26 213.7 38.6 302 127-438 34-347 (389)
46 KOG0624 dsRNA-activated protei 99.9 3E-21 6.5E-26 182.6 34.6 344 124-598 34-380 (504)
47 KOG0548 Molecular co-chaperone 99.9 2.3E-21 5E-26 196.0 35.6 471 131-700 5-485 (539)
48 KOG0624 dsRNA-activated protei 99.9 1E-21 2.3E-26 185.6 30.2 330 38-416 36-381 (504)
49 KOG1915 Cell cycle control pro 99.9 2.4E-19 5.2E-24 177.1 47.9 472 115-682 60-547 (677)
50 PRK11788 tetratricopeptide rep 99.9 7.4E-22 1.6E-26 215.9 31.8 203 345-624 38-245 (389)
51 KOG4162 Predicted calmodulin-b 99.9 2.4E-19 5.2E-24 188.6 42.0 441 126-627 321-788 (799)
52 KOG1174 Anaphase-promoting com 99.9 5.5E-19 1.2E-23 171.7 39.6 419 198-689 98-519 (564)
53 KOG1174 Anaphase-promoting com 99.9 2.1E-18 4.5E-23 167.7 41.1 432 107-602 56-514 (564)
54 KOG1915 Cell cycle control pro 99.9 1.9E-16 4.1E-21 156.9 48.3 465 32-604 65-551 (677)
55 PF13429 TPR_15: Tetratricopep 99.8 7.9E-21 1.7E-25 195.7 13.3 265 452-779 12-277 (280)
56 KOG3785 Uncharacterized conser 99.8 5.9E-17 1.3E-21 154.4 38.1 450 174-783 34-494 (557)
57 TIGR00540 hemY_coli hemY prote 99.8 8.2E-18 1.8E-22 182.2 37.1 306 131-441 87-402 (409)
58 KOG1129 TPR repeat-containing 99.8 3E-19 6.4E-24 168.1 21.9 419 131-605 7-475 (478)
59 KOG2047 mRNA splicing factor [ 99.8 1.5E-14 3.3E-19 149.0 56.1 665 36-773 23-717 (835)
60 PF13429 TPR_15: Tetratricopep 99.8 2.4E-20 5.3E-25 192.1 12.7 262 167-438 13-277 (280)
61 PRK12370 invasion protein regu 99.8 4.7E-18 1E-22 191.1 29.2 270 123-404 251-534 (553)
62 KOG1129 TPR repeat-containing 99.8 1.5E-18 3.2E-23 163.5 18.8 275 136-418 187-471 (478)
63 PRK10747 putative protoheme IX 99.8 1.6E-16 3.5E-21 171.0 36.9 296 131-439 87-391 (398)
64 PRK12370 invasion protein regu 99.8 2.1E-17 4.6E-22 185.9 30.2 236 157-403 251-500 (553)
65 TIGR00540 hemY_coli hemY prote 99.8 3.6E-16 7.8E-21 169.4 38.0 290 107-405 97-399 (409)
66 KOG2047 mRNA splicing factor [ 99.8 4E-13 8.6E-18 138.8 56.6 595 114-782 46-690 (835)
67 KOG3785 Uncharacterized conser 99.8 1.3E-15 2.8E-20 145.4 35.5 379 137-621 31-421 (557)
68 PRK10747 putative protoheme IX 99.8 5.5E-16 1.2E-20 166.8 34.3 297 165-477 87-390 (398)
69 KOG2376 Signal recognition par 99.8 1.3E-14 2.9E-19 148.6 41.7 399 346-796 83-504 (652)
70 COG3063 PilF Tfp pilus assembl 99.8 1.7E-16 3.6E-21 143.6 24.5 209 197-412 35-243 (250)
71 KOG2376 Signal recognition par 99.8 1E-14 2.2E-19 149.4 40.5 460 106-618 24-516 (652)
72 KOG1125 TPR repeat-containing 99.8 1.9E-17 4.1E-22 169.4 20.8 261 201-469 289-563 (579)
73 PRK11189 lipoprotein NlpI; Pro 99.8 2.3E-16 5.1E-21 162.1 29.0 152 108-264 40-195 (296)
74 COG3063 PilF Tfp pilus assembl 99.8 2.1E-16 4.7E-21 142.8 23.7 210 342-597 35-245 (250)
75 KOG1125 TPR repeat-containing 99.8 1.6E-16 3.4E-21 162.8 23.6 256 132-428 289-561 (579)
76 PRK11189 lipoprotein NlpI; Pro 99.8 5.6E-16 1.2E-20 159.3 27.9 234 138-420 36-281 (296)
77 KOG0550 Molecular chaperone (D 99.7 3.5E-16 7.5E-21 152.9 23.3 274 106-408 61-353 (486)
78 COG2956 Predicted N-acetylgluc 99.7 3.3E-14 7.2E-19 134.8 34.4 301 130-476 37-346 (389)
79 KOG1840 Kinesin light chain [C 99.7 8.6E-15 1.9E-19 155.3 34.3 256 298-588 192-479 (508)
80 KOG1840 Kinesin light chain [C 99.7 1.7E-14 3.7E-19 153.0 35.3 254 264-553 195-478 (508)
81 COG2956 Predicted N-acetylgluc 99.7 1.7E-14 3.6E-19 136.8 31.2 296 203-586 41-345 (389)
82 PF12569 NARP1: NMDA receptor- 99.7 6.8E-14 1.5E-18 150.8 39.0 352 448-867 4-379 (517)
83 KOG0550 Molecular chaperone (D 99.7 3.5E-16 7.5E-21 152.9 19.1 311 164-600 51-361 (486)
84 TIGR02521 type_IV_pilW type IV 99.7 2.6E-15 5.6E-20 151.8 26.6 197 83-294 31-229 (234)
85 TIGR02521 type_IV_pilW type IV 99.7 3.1E-15 6.8E-20 151.2 27.2 202 197-405 31-232 (234)
86 PF12569 NARP1: NMDA receptor- 99.7 5E-14 1.1E-18 151.8 35.0 354 411-834 5-393 (517)
87 PLN02789 farnesyltranstransfer 99.7 7.4E-15 1.6E-19 149.6 24.9 219 42-280 39-267 (320)
88 PLN02789 farnesyltranstransfer 99.7 2.6E-14 5.6E-19 145.7 27.2 227 108-388 34-267 (320)
89 cd05804 StaR_like StaR_like; a 99.7 2.2E-13 4.9E-18 146.8 36.0 312 124-441 2-339 (355)
90 cd05804 StaR_like StaR_like; a 99.6 5.2E-13 1.1E-17 143.9 33.4 308 82-406 5-337 (355)
91 KOG4340 Uncharacterized conser 99.6 4.5E-13 9.9E-18 125.2 26.1 423 138-630 20-451 (459)
92 KOG4340 Uncharacterized conser 99.6 8.6E-13 1.9E-17 123.4 26.3 320 106-437 22-374 (459)
93 TIGR03302 OM_YfiO outer membra 99.6 1.7E-13 3.7E-18 137.5 23.1 112 123-234 28-152 (235)
94 TIGR03302 OM_YfiO outer membra 99.6 2.6E-13 5.6E-18 136.2 23.2 201 520-782 28-235 (235)
95 PRK14720 transcript cleavage f 99.6 8E-10 1.7E-14 124.8 52.0 249 121-409 24-310 (906)
96 PRK15359 type III secretion sy 99.6 7.3E-14 1.6E-18 125.8 15.5 127 114-244 13-139 (144)
97 COG3071 HemY Uncharacterized e 99.5 5.6E-11 1.2E-15 117.2 34.4 296 134-439 90-391 (400)
98 PRK15359 type III secretion sy 99.5 6.3E-13 1.4E-17 119.7 15.2 125 661-795 13-137 (144)
99 COG3071 HemY Uncharacterized e 99.5 7.4E-11 1.6E-15 116.4 29.9 145 580-747 250-394 (400)
100 PRK10370 formate-dependent nit 99.5 5.2E-12 1.1E-16 120.3 19.6 122 108-230 53-177 (198)
101 KOG1130 Predicted G-alpha GTPa 99.4 2.9E-12 6.3E-17 125.3 15.7 298 275-609 24-371 (639)
102 KOG3060 Uncharacterized conser 99.4 6E-11 1.3E-15 109.2 23.2 209 423-685 26-235 (289)
103 KOG1130 Predicted G-alpha GTPa 99.4 8E-12 1.7E-16 122.3 18.6 310 133-466 22-373 (639)
104 PRK04841 transcriptional regul 99.4 1.1E-09 2.4E-14 133.9 42.1 268 42-333 343-640 (903)
105 PRK14720 transcript cleavage f 99.4 9.5E-12 2.1E-16 140.1 20.8 226 520-796 26-269 (906)
106 KOG3060 Uncharacterized conser 99.4 8.3E-11 1.8E-15 108.3 22.8 209 52-275 24-232 (289)
107 COG5010 TadD Flp pilus assembl 99.4 2.2E-11 4.8E-16 113.7 19.4 179 112-295 51-229 (257)
108 PRK04841 transcriptional regul 99.4 1.6E-09 3.4E-14 132.7 41.0 366 109-478 356-761 (903)
109 PRK10370 formate-dependent nit 99.4 1.4E-11 3E-16 117.4 17.9 123 655-784 53-178 (198)
110 KOG1128 Uncharacterized conser 99.4 2E-11 4.3E-16 129.0 20.2 219 42-299 400-618 (777)
111 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 3E-16 111.4 14.9 119 115-234 4-122 (135)
112 COG5010 TadD Flp pilus assembl 99.4 1.1E-10 2.3E-15 109.2 20.3 180 145-332 50-229 (257)
113 KOG2053 Mitochondrial inherita 99.3 4.1E-07 9E-12 99.3 48.2 237 139-409 20-259 (932)
114 PRK15179 Vi polysaccharide bio 99.3 1.4E-10 2.9E-15 130.6 22.7 156 112-271 70-225 (694)
115 TIGR02552 LcrH_SycD type III s 99.3 3E-11 6.5E-16 109.2 14.2 119 662-787 4-122 (135)
116 KOG1128 Uncharacterized conser 99.3 1.8E-10 3.9E-15 121.9 20.6 238 448-762 398-635 (777)
117 KOG3617 WD40 and TPR repeat-co 99.3 7E-07 1.5E-11 95.9 44.6 549 107-784 741-1364(1416)
118 PRK15363 pathogenicity island 99.3 9.7E-11 2.1E-15 102.2 13.1 107 121-228 27-134 (157)
119 PRK15179 Vi polysaccharide bio 99.2 4.5E-10 9.7E-15 126.5 20.8 175 41-233 50-224 (694)
120 PF04733 Coatomer_E: Coatomer 99.2 1.9E-10 4.1E-15 116.1 15.4 236 523-787 33-273 (290)
121 KOG2053 Mitochondrial inherita 99.2 3.6E-06 7.7E-11 92.3 48.1 135 107-243 22-156 (932)
122 KOG0553 TPR repeat-containing 99.2 1.4E-10 3E-15 110.6 12.7 115 131-246 84-198 (304)
123 PRK10866 outer membrane biogen 99.2 5.6E-09 1.2E-13 102.9 22.9 203 126-367 30-237 (243)
124 PF04733 Coatomer_E: Coatomer 99.2 2.9E-10 6.3E-15 114.8 13.8 117 306-425 132-251 (290)
125 PRK10866 outer membrane biogen 99.2 5E-09 1.1E-13 103.2 22.1 187 106-332 44-239 (243)
126 COG4783 Putative Zn-dependent 99.2 5E-09 1.1E-13 106.7 22.3 152 159-334 303-454 (484)
127 COG4783 Putative Zn-dependent 99.2 2.3E-09 4.9E-14 109.1 19.8 154 124-298 302-455 (484)
128 KOG0553 TPR repeat-containing 99.2 3.6E-10 7.8E-15 107.7 12.9 121 89-214 80-200 (304)
129 PF13525 YfiO: Outer membrane 99.2 3.6E-09 7.7E-14 102.0 19.9 192 524-771 4-199 (203)
130 KOG3617 WD40 and TPR repeat-co 99.2 1.6E-06 3.4E-11 93.3 40.5 439 27-551 713-1171(1416)
131 PRK15363 pathogenicity island 99.1 1.2E-09 2.5E-14 95.6 12.9 106 156-265 28-134 (157)
132 PF13525 YfiO: Outer membrane 99.1 1.3E-08 2.8E-13 98.2 21.6 187 127-359 4-195 (203)
133 KOG1914 mRNA cleavage and poly 99.1 1.3E-05 2.8E-10 82.9 42.0 416 118-622 10-464 (656)
134 PLN03088 SGT1, suppressor of 99.1 2.3E-09 5E-14 112.9 16.2 113 131-244 5-117 (356)
135 KOG2471 TPR repeat-containing 99.0 6.8E-07 1.5E-11 90.5 29.6 163 382-571 212-381 (696)
136 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.8E-09 1.7E-13 91.1 14.4 108 128-235 2-114 (119)
137 KOG1941 Acetylcholine receptor 99.0 6.8E-08 1.5E-12 93.8 21.1 305 278-619 16-357 (518)
138 KOG1941 Acetylcholine receptor 99.0 2.6E-07 5.7E-12 89.8 24.9 256 201-459 10-297 (518)
139 KOG3616 Selective LIM binding 99.0 1E-05 2.2E-10 86.1 38.3 328 104-476 454-819 (1636)
140 COG4785 NlpI Lipoprotein NlpI, 99.0 3E-08 6.5E-13 89.1 16.9 129 81-222 63-191 (297)
141 COG4235 Cytochrome c biogenesi 99.0 1E-08 2.2E-13 99.1 14.9 120 110-230 138-260 (287)
142 TIGR02795 tol_pal_ybgF tol-pal 99.0 9.3E-09 2E-13 90.6 13.5 109 676-786 3-112 (119)
143 COG4785 NlpI Lipoprotein NlpI, 99.0 2.4E-08 5.3E-13 89.7 15.4 197 128-333 65-265 (297)
144 PLN03088 SGT1, suppressor of 99.0 1.3E-08 2.8E-13 107.3 16.0 112 165-280 5-116 (356)
145 KOG1914 mRNA cleavage and poly 99.0 6.1E-05 1.3E-09 78.0 41.0 189 541-745 309-503 (656)
146 PRK15331 chaperone protein Sic 99.0 1.4E-08 3E-13 89.1 13.0 109 120-230 29-137 (165)
147 COG1729 Uncharacterized protei 99.0 1.1E-08 2.3E-13 97.7 13.2 108 678-787 144-252 (262)
148 KOG2300 Uncharacterized conser 99.0 7.2E-05 1.6E-09 76.3 40.5 424 163-671 8-515 (629)
149 PRK10803 tol-pal system protei 98.9 2.1E-08 4.6E-13 99.3 14.9 110 674-785 141-252 (263)
150 COG4105 ComL DNA uptake lipopr 98.9 3.6E-07 7.7E-12 86.4 21.9 200 523-784 32-238 (254)
151 KOG1070 rRNA processing protei 98.9 5.6E-07 1.2E-11 102.5 26.7 230 16-264 1434-1664(1710)
152 COG4235 Cytochrome c biogenesi 98.9 7E-08 1.5E-12 93.3 15.8 120 178-298 138-257 (287)
153 PRK11906 transcriptional regul 98.9 1.6E-07 3.4E-12 96.8 18.8 144 124-271 244-409 (458)
154 PF13414 TPR_11: TPR repeat; P 98.8 1E-08 2.2E-13 79.4 7.5 66 128-193 3-69 (69)
155 PRK02603 photosystem I assembl 98.8 8.8E-08 1.9E-12 90.1 15.2 119 125-267 32-153 (172)
156 cd00189 TPR Tetratricopeptide 98.8 3.9E-08 8.4E-13 82.9 11.6 98 130-228 2-99 (100)
157 PF12895 Apc3: Anaphase-promot 98.8 7.9E-09 1.7E-13 83.5 6.6 81 141-223 2-84 (84)
158 PRK10803 tol-pal system protei 98.8 1.3E-07 2.8E-12 93.8 16.0 107 128-234 142-254 (263)
159 KOG2300 Uncharacterized conser 98.8 0.00028 6.1E-09 72.2 41.8 474 232-773 8-550 (629)
160 PF13414 TPR_11: TPR repeat; P 98.8 2.3E-08 4.9E-13 77.5 8.3 67 713-781 2-69 (69)
161 PRK11906 transcriptional regul 98.8 3.9E-07 8.5E-12 94.0 19.5 148 109-261 273-434 (458)
162 PF09976 TPR_21: Tetratricopep 98.8 1.8E-07 3.8E-12 85.0 15.4 117 140-260 23-144 (145)
163 PF09976 TPR_21: Tetratricopep 98.8 1.4E-07 3.1E-12 85.7 14.3 121 281-402 24-144 (145)
164 COG4105 ComL DNA uptake lipopr 98.8 1.8E-06 4E-11 81.7 21.6 192 127-367 33-229 (254)
165 PF13432 TPR_16: Tetratricopep 98.8 2E-08 4.3E-13 76.6 7.1 63 133-195 2-64 (65)
166 KOG3081 Vesicle coat complex C 98.8 5.7E-06 1.2E-10 77.7 24.3 251 313-625 16-274 (299)
167 PRK10153 DNA-binding transcrip 98.8 4.5E-07 9.7E-12 99.5 19.9 141 124-269 333-488 (517)
168 PF14938 SNAP: Soluble NSF att 98.8 2.6E-07 5.6E-12 94.6 17.0 171 351-558 44-229 (282)
169 PRK02603 photosystem I assembl 98.8 1.7E-07 3.7E-12 88.1 14.6 108 302-409 32-153 (172)
170 KOG3616 Selective LIM binding 98.8 0.00057 1.2E-08 73.3 51.8 425 274-780 712-1185(1636)
171 KOG3081 Vesicle coat complex C 98.8 4.3E-06 9.3E-11 78.6 23.0 161 561-743 110-270 (299)
172 PRK10153 DNA-binding transcrip 98.8 3.3E-07 7.2E-12 100.5 18.3 151 35-198 332-489 (517)
173 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3.1E-12 88.4 13.4 101 110-211 15-120 (168)
174 PF12895 Apc3: Anaphase-promot 98.7 1.2E-08 2.7E-13 82.4 5.2 81 107-188 2-84 (84)
175 KOG0543 FKBP-type peptidyl-pro 98.7 1.7E-07 3.6E-12 94.0 14.0 140 41-191 209-355 (397)
176 PF14938 SNAP: Soluble NSF att 98.7 4E-07 8.7E-12 93.2 17.1 216 356-622 29-266 (282)
177 PF13512 TPR_18: Tetratricopep 98.7 4.1E-07 8.8E-12 78.3 13.8 110 674-785 9-134 (142)
178 CHL00033 ycf3 photosystem I as 98.7 3.8E-07 8.2E-12 85.5 15.0 109 50-176 9-120 (168)
179 KOG2471 TPR repeat-containing 98.7 0.00011 2.5E-09 75.0 32.7 276 109-388 32-381 (696)
180 KOG1070 rRNA processing protei 98.7 5E-06 1.1E-10 95.0 25.7 216 253-477 1443-1663(1710)
181 cd00189 TPR Tetratricopeptide 98.7 2.2E-07 4.8E-12 78.2 11.6 98 164-265 2-99 (100)
182 KOG0543 FKBP-type peptidyl-pro 98.7 4.7E-07 1E-11 90.9 15.1 131 131-264 211-356 (397)
183 PF13432 TPR_16: Tetratricopep 98.7 7.6E-08 1.6E-12 73.4 7.4 64 347-410 2-65 (65)
184 PRK15331 chaperone protein Sic 98.7 2.3E-07 4.9E-12 81.7 10.8 111 669-787 31-141 (165)
185 PF13512 TPR_18: Tetratricopep 98.7 7.4E-07 1.6E-11 76.7 13.6 86 127-212 9-99 (142)
186 KOG4648 Uncharacterized conser 98.7 1.3E-08 2.8E-13 97.8 3.3 242 131-416 100-341 (536)
187 COG1729 Uncharacterized protei 98.7 5.9E-07 1.3E-11 86.0 14.4 109 271-379 144-252 (262)
188 COG3898 Uncharacterized membra 98.6 0.00016 3.4E-09 71.9 30.4 296 168-478 90-393 (531)
189 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00018 4E-09 73.1 33.0 203 200-408 62-268 (291)
190 COG0457 NrfG FOG: TPR repeat [ 98.6 7.2E-05 1.6E-09 76.2 29.4 219 108-333 37-264 (291)
191 PF12688 TPR_5: Tetratrico pep 98.6 2.1E-06 4.5E-11 73.1 13.8 98 128-225 1-103 (120)
192 PF07079 DUF1347: Protein of u 98.6 0.0015 3.2E-08 66.8 43.0 440 105-619 17-521 (549)
193 COG3898 Uncharacterized membra 98.6 0.00037 8E-09 69.4 30.4 263 128-404 120-391 (531)
194 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-06 5.3E-11 89.2 16.7 118 136-260 177-294 (395)
195 KOG1258 mRNA processing protei 98.5 0.0022 4.8E-08 68.4 37.8 186 449-689 298-489 (577)
196 KOG1258 mRNA processing protei 98.5 0.0026 5.5E-08 68.0 38.9 392 145-605 62-487 (577)
197 PF14559 TPR_19: Tetratricopep 98.5 3.4E-07 7.4E-12 70.6 6.6 62 174-236 3-64 (68)
198 PF12688 TPR_5: Tetratrico pep 98.5 3E-06 6.4E-11 72.2 12.2 98 306-403 2-102 (120)
199 PF10345 Cohesin_load: Cohesin 98.5 0.0048 1E-07 70.9 42.0 409 322-783 38-567 (608)
200 PF14559 TPR_19: Tetratricopep 98.5 6.6E-07 1.4E-11 69.0 7.3 67 352-418 1-67 (68)
201 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.0027 5.9E-08 64.6 34.7 420 15-476 17-494 (660)
202 KOG4648 Uncharacterized conser 98.4 2.8E-07 6.1E-12 88.9 6.1 226 452-748 101-335 (536)
203 PF13371 TPR_9: Tetratricopept 98.4 1.4E-06 3E-11 68.3 8.7 63 170-233 3-65 (73)
204 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.4E-06 1.4E-10 86.1 16.0 118 170-294 177-294 (395)
205 PF10345 Cohesin_load: Cohesin 98.4 0.0086 1.9E-07 68.9 49.4 467 250-778 37-605 (608)
206 COG4700 Uncharacterized protei 98.4 3.4E-05 7.3E-10 68.2 16.7 134 107-246 73-208 (251)
207 KOG4234 TPR repeat-containing 98.4 5.7E-06 1.2E-10 73.8 11.5 99 133-232 100-203 (271)
208 PF13371 TPR_9: Tetratricopept 98.3 2.9E-06 6.3E-11 66.5 8.8 70 348-417 1-70 (73)
209 KOG2796 Uncharacterized conser 98.3 0.00038 8.2E-09 65.4 23.1 145 164-311 179-329 (366)
210 KOG2796 Uncharacterized conser 98.3 9.8E-05 2.1E-09 69.2 18.8 148 560-722 178-331 (366)
211 KOG4234 TPR repeat-containing 98.3 6.4E-06 1.4E-10 73.5 9.9 111 43-168 98-208 (271)
212 PF13424 TPR_12: Tetratricopep 98.3 2.9E-06 6.3E-11 67.5 7.2 69 712-780 3-76 (78)
213 PF07079 DUF1347: Protein of u 98.3 0.0081 1.8E-07 61.6 40.8 144 130-296 8-156 (549)
214 COG4700 Uncharacterized protei 98.2 0.00024 5.3E-09 63.0 18.3 111 655-771 103-214 (251)
215 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.01 2.2E-07 60.6 35.8 419 116-622 30-495 (660)
216 KOG4555 TPR repeat-containing 98.2 3E-05 6.5E-10 64.0 10.7 98 679-781 47-146 (175)
217 PF13424 TPR_12: Tetratricopep 98.1 4.3E-06 9.2E-11 66.5 5.2 73 672-744 2-76 (78)
218 KOG2396 HAT (Half-A-TPR) repea 98.1 0.019 4.1E-07 59.9 39.2 102 521-622 456-559 (568)
219 KOG4507 Uncharacterized conser 98.1 0.001 2.2E-08 69.8 23.1 116 117-233 202-319 (886)
220 KOG2610 Uncharacterized conser 98.1 0.00043 9.4E-09 67.4 18.9 171 565-749 109-282 (491)
221 KOG4555 TPR repeat-containing 98.1 0.00014 3E-09 60.2 13.0 99 131-229 46-147 (175)
222 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.5E-05 3.2E-10 82.5 9.3 68 124-191 71-141 (453)
223 KOG0985 Vesicle coat protein c 98.1 0.04 8.6E-07 62.3 53.3 227 523-799 1102-1328(1666)
224 KOG1586 Protein required for f 98.1 0.0013 2.8E-08 60.9 20.4 147 378-561 76-231 (288)
225 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.5E-05 5.3E-10 80.9 9.5 71 157-227 70-142 (453)
226 KOG1586 Protein required for f 97.9 0.0035 7.5E-08 58.2 20.7 186 389-625 27-227 (288)
227 PF05843 Suf: Suppressor of fo 97.9 0.00043 9.4E-09 70.5 16.9 128 655-787 15-144 (280)
228 KOG4507 Uncharacterized conser 97.9 0.0038 8.2E-08 65.7 23.2 112 676-793 607-719 (886)
229 PF06552 TOM20_plant: Plant sp 97.9 0.00013 2.8E-09 65.1 10.8 104 109-236 6-119 (186)
230 KOG1585 Protein required for f 97.9 0.0022 4.8E-08 59.9 18.5 159 421-617 83-251 (308)
231 PF06552 TOM20_plant: Plant sp 97.9 0.00011 2.3E-09 65.6 9.7 37 107-143 48-84 (186)
232 PF05843 Suf: Suppressor of fo 97.9 0.00037 8E-09 71.0 15.3 135 130-268 3-141 (280)
233 KOG4642 Chaperone-dependent E3 97.9 0.0002 4.3E-09 66.4 11.4 86 107-192 23-108 (284)
234 PF13281 DUF4071: Domain of un 97.9 0.0025 5.5E-08 65.7 20.7 132 559-695 141-279 (374)
235 KOG4642 Chaperone-dependent E3 97.8 0.00016 3.5E-09 66.9 10.7 122 348-469 16-138 (284)
236 PF13428 TPR_14: Tetratricopep 97.8 4.4E-05 9.5E-10 52.1 5.4 43 128-170 1-43 (44)
237 PF04184 ST7: ST7 protein; In 97.8 0.0044 9.5E-08 64.7 21.3 198 201-416 172-386 (539)
238 KOG2610 Uncharacterized conser 97.8 0.0024 5.3E-08 62.4 17.9 126 132-260 107-235 (491)
239 PF13428 TPR_14: Tetratricopep 97.8 6.4E-05 1.4E-09 51.3 5.3 42 198-239 2-43 (44)
240 KOG1550 Extracellular protein 97.8 0.0088 1.9E-07 67.5 25.2 34 83-122 244-277 (552)
241 PF10300 DUF3808: Protein of u 97.8 0.045 9.8E-07 60.3 30.0 120 283-405 248-376 (468)
242 KOG1585 Protein required for f 97.8 0.0048 1E-07 57.7 18.5 165 382-584 77-252 (308)
243 PF10300 DUF3808: Protein of u 97.7 0.00064 1.4E-08 74.5 15.4 171 45-224 193-374 (468)
244 KOG1550 Extracellular protein 97.7 0.0082 1.8E-07 67.7 24.1 270 524-833 243-539 (552)
245 PF04184 ST7: ST7 protein; In 97.7 0.0034 7.5E-08 65.4 18.3 191 564-785 173-381 (539)
246 COG2909 MalT ATP-dependent tra 97.7 0.13 2.8E-06 58.2 31.3 278 302-625 344-650 (894)
247 KOG0376 Serine-threonine phosp 97.6 0.00011 2.4E-09 75.9 5.9 100 106-206 16-115 (476)
248 PF08631 SPO22: Meiosis protei 97.6 0.12 2.5E-06 52.9 28.0 100 200-299 38-152 (278)
249 COG2909 MalT ATP-dependent tra 97.6 0.11 2.3E-06 58.8 28.8 239 524-775 414-684 (894)
250 PF13431 TPR_17: Tetratricopep 97.6 6.4E-05 1.4E-09 47.5 2.5 32 664-695 2-33 (34)
251 KOG0985 Vesicle coat protein c 97.5 0.27 5.9E-06 56.0 57.8 330 38-433 982-1336(1666)
252 PF08631 SPO22: Meiosis protei 97.5 0.065 1.4E-06 54.7 25.0 234 458-742 3-274 (278)
253 PF02259 FAT: FAT domain; Int 97.5 0.046 9.9E-07 58.8 25.4 152 264-420 142-302 (352)
254 COG3118 Thioredoxin domain-con 97.5 0.0093 2E-07 58.2 17.0 152 127-282 133-286 (304)
255 KOG0890 Protein kinase of the 97.5 0.66 1.4E-05 58.5 41.2 366 44-441 1387-1787(2382)
256 KOG0545 Aryl-hydrocarbon recep 97.5 0.001 2.2E-08 62.0 10.0 103 128-231 178-298 (329)
257 KOG0551 Hsp90 co-chaperone CNS 97.4 0.019 4.1E-07 56.6 18.6 82 713-794 80-163 (390)
258 PF13431 TPR_17: Tetratricopep 97.4 0.0001 2.3E-09 46.5 2.3 32 117-148 2-33 (34)
259 KOG0376 Serine-threonine phosp 97.4 0.00029 6.3E-09 72.9 6.7 109 132-241 8-116 (476)
260 COG2976 Uncharacterized protei 97.4 0.01 2.2E-07 54.0 15.3 104 305-409 89-192 (207)
261 KOG0545 Aryl-hydrocarbon recep 97.4 0.0014 3.1E-08 61.0 10.2 123 448-595 178-300 (329)
262 PF07719 TPR_2: Tetratricopept 97.4 0.00042 9E-09 44.2 5.0 33 751-783 2-34 (34)
263 PF13281 DUF4071: Domain of un 97.3 0.041 8.8E-07 57.0 20.9 117 164-282 143-273 (374)
264 KOG0530 Protein farnesyltransf 97.3 0.064 1.4E-06 51.1 20.1 183 112-295 61-251 (318)
265 COG2976 Uncharacterized protei 97.3 0.011 2.4E-07 53.7 14.6 116 256-375 74-192 (207)
266 PRK13184 pknD serine/threonine 97.3 0.63 1.4E-05 55.1 37.0 393 44-476 479-924 (932)
267 PF04910 Tcf25: Transcriptiona 97.3 0.0066 1.4E-07 63.8 15.6 175 25-229 25-225 (360)
268 COG3118 Thioredoxin domain-con 97.3 0.028 6.1E-07 54.9 18.1 161 560-737 135-295 (304)
269 PF00515 TPR_1: Tetratricopept 97.3 0.00053 1.1E-08 43.7 4.5 32 751-782 2-33 (34)
270 PRK15180 Vi polysaccharide bio 97.3 0.11 2.4E-06 53.8 22.6 128 106-234 301-428 (831)
271 PF02259 FAT: FAT domain; Int 97.2 0.26 5.7E-06 52.9 27.8 160 671-833 142-339 (352)
272 KOG2041 WD40 repeat protein [G 97.2 0.53 1.2E-05 51.4 30.6 268 14-331 659-936 (1189)
273 PF00515 TPR_1: Tetratricopept 97.2 0.00064 1.4E-08 43.3 4.0 31 199-229 3-33 (34)
274 PF07719 TPR_2: Tetratricopept 97.2 0.00093 2E-08 42.6 4.6 31 199-229 3-33 (34)
275 KOG2062 26S proteasome regulat 97.1 0.68 1.5E-05 51.2 34.0 253 537-832 369-635 (929)
276 KOG2396 HAT (Half-A-TPR) repea 97.0 0.62 1.4E-05 49.1 41.3 93 180-275 89-181 (568)
277 PF04781 DUF627: Protein of un 96.9 0.0058 1.3E-07 50.0 8.2 106 46-157 2-107 (111)
278 PF08424 NRDE-2: NRDE-2, neces 96.9 0.074 1.6E-06 55.5 18.3 83 179-262 48-130 (321)
279 PF03704 BTAD: Bacterial trans 96.9 0.053 1.1E-06 49.3 15.2 129 306-449 7-137 (146)
280 KOG0128 RNA-binding protein SA 96.9 1.2 2.6E-05 50.2 31.9 260 143-438 94-376 (881)
281 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0062 1.3E-07 59.8 9.2 100 129-229 82-185 (390)
282 PF13174 TPR_6: Tetratricopept 96.8 0.0027 5.8E-08 40.1 4.5 31 752-782 2-32 (33)
283 KOG3364 Membrane protein invol 96.8 0.016 3.4E-07 48.9 9.9 88 712-799 30-120 (149)
284 PF13174 TPR_6: Tetratricopept 96.8 0.0022 4.7E-08 40.5 4.0 33 715-747 1-33 (33)
285 PRK13184 pknD serine/threonine 96.8 1.3 2.8E-05 52.6 29.0 109 273-385 480-595 (932)
286 KOG0530 Protein farnesyltransf 96.8 0.35 7.6E-06 46.3 19.4 83 354-436 55-140 (318)
287 COG5159 RPN6 26S proteasome re 96.7 0.39 8.5E-06 46.5 19.6 131 422-589 98-236 (421)
288 KOG2062 26S proteasome regulat 96.7 1.4 3E-05 48.9 41.8 275 353-689 368-656 (929)
289 COG0790 FOG: TPR repeat, SEL1 96.7 0.22 4.8E-06 51.7 20.4 173 536-728 52-236 (292)
290 COG0790 FOG: TPR repeat, SEL1 96.6 0.29 6.2E-06 50.8 20.7 189 569-783 51-270 (292)
291 KOG0890 Protein kinase of the 96.6 3.6 7.8E-05 52.4 40.9 327 273-623 1388-1732(2382)
292 PF04910 Tcf25: Transcriptiona 96.6 0.072 1.6E-06 56.1 15.8 149 119-267 31-226 (360)
293 PF03704 BTAD: Bacterial trans 96.6 0.041 8.9E-07 50.0 12.3 88 135-223 13-122 (146)
294 KOG1464 COP9 signalosome, subu 96.6 0.2 4.3E-06 47.9 16.5 221 356-607 41-286 (440)
295 KOG1308 Hsp70-interacting prot 96.5 0.0039 8.6E-08 61.5 5.4 95 134-229 120-214 (377)
296 PF13176 TPR_7: Tetratricopept 96.5 0.0035 7.6E-08 40.4 3.5 28 716-743 1-28 (36)
297 KOG1463 26S proteasome regulat 96.5 1.1 2.3E-05 44.9 21.2 247 378-673 50-319 (411)
298 KOG1308 Hsp70-interacting prot 96.4 0.007 1.5E-07 59.8 6.5 85 110-194 130-214 (377)
299 PF13181 TPR_8: Tetratricopept 96.4 0.0057 1.2E-07 38.8 4.1 30 752-781 3-32 (34)
300 PRK15180 Vi polysaccharide bio 96.4 1.6 3.5E-05 45.7 26.9 128 138-269 299-426 (831)
301 KOG0128 RNA-binding protein SA 96.4 2.5 5.4E-05 47.8 36.8 235 526-773 313-557 (881)
302 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.023 4.9E-07 40.0 6.9 43 751-793 2-44 (53)
303 PF13181 TPR_8: Tetratricopept 96.3 0.0062 1.3E-07 38.7 3.9 31 199-229 3-33 (34)
304 PF09613 HrpB1_HrpK: Bacterial 96.3 0.052 1.1E-06 48.3 10.6 85 129-214 11-95 (160)
305 PF08424 NRDE-2: NRDE-2, neces 96.2 0.43 9.4E-06 49.8 18.7 121 358-478 47-184 (321)
306 COG4649 Uncharacterized protei 96.2 0.24 5.2E-06 44.1 13.6 138 655-795 72-211 (221)
307 KOG2041 WD40 repeat protein [G 96.1 3.1 6.7E-05 45.9 30.3 187 250-474 750-936 (1189)
308 KOG0163 Myosin class VI heavy 96.1 0.81 1.7E-05 50.3 19.7 24 679-706 750-773 (1259)
309 PF09986 DUF2225: Uncharacteri 96.0 0.076 1.7E-06 51.1 10.9 96 688-783 90-198 (214)
310 KOG3783 Uncharacterized conser 95.9 0.9 1.9E-05 48.7 19.1 91 146-238 251-344 (546)
311 KOG1029 Endocytic adaptor prot 95.8 0.13 2.8E-06 56.4 12.7 16 870-885 356-371 (1118)
312 KOG1463 26S proteasome regulat 95.8 2.4 5.3E-05 42.5 22.7 169 236-407 133-318 (411)
313 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.044 9.5E-07 38.6 6.1 42 130-171 3-44 (53)
314 PF09613 HrpB1_HrpK: Bacterial 95.6 0.17 3.8E-06 45.1 10.7 83 111-194 27-109 (160)
315 PF14561 TPR_20: Tetratricopep 95.6 0.14 2.9E-06 41.4 9.3 65 148-212 8-73 (90)
316 PF04781 DUF627: Protein of un 95.5 0.17 3.8E-06 41.7 9.6 44 253-296 63-106 (111)
317 KOG2422 Uncharacterized conser 95.5 1.2 2.6E-05 47.9 18.2 157 109-266 253-451 (665)
318 COG5159 RPN6 26S proteasome re 95.5 2.7 5.8E-05 41.0 22.1 164 272-435 129-311 (421)
319 PF13176 TPR_7: Tetratricopept 95.4 0.028 6.1E-07 36.1 3.8 29 752-780 1-29 (36)
320 KOG3364 Membrane protein invol 95.3 0.29 6.3E-06 41.7 10.5 79 161-239 31-113 (149)
321 KOG1464 COP9 signalosome, subu 95.2 3.1 6.7E-05 40.2 24.7 200 389-625 40-263 (440)
322 KOG1538 Uncharacterized conser 95.2 5.2 0.00011 43.8 21.6 27 524-550 803-829 (1081)
323 COG4649 Uncharacterized protei 95.1 2.2 4.7E-05 38.3 15.6 123 136-261 66-194 (221)
324 TIGR02561 HrpB1_HrpK type III 95.1 0.67 1.5E-05 40.6 12.2 83 131-214 13-95 (153)
325 PF14561 TPR_20: Tetratricopep 95.0 0.22 4.7E-06 40.2 8.6 67 113-179 7-75 (90)
326 PF09986 DUF2225: Uncharacteri 94.9 0.54 1.2E-05 45.4 12.8 103 424-556 92-196 (214)
327 KOG3783 Uncharacterized conser 94.8 7.1 0.00015 42.2 23.6 252 251-558 250-524 (546)
328 PRK10941 hypothetical protein; 94.8 0.23 5E-06 49.6 10.2 56 112-167 199-254 (269)
329 PRK10941 hypothetical protein; 94.7 0.24 5.3E-06 49.4 10.1 76 345-420 184-259 (269)
330 KOG3824 Huntingtin interacting 94.6 0.14 3.1E-06 49.8 7.9 58 138-195 126-183 (472)
331 PF12968 DUF3856: Domain of Un 94.6 0.96 2.1E-05 37.5 11.2 97 683-779 17-129 (144)
332 KOG3824 Huntingtin interacting 94.5 0.11 2.3E-06 50.6 6.7 63 208-273 127-189 (472)
333 TIGR02561 HrpB1_HrpK type III 94.4 0.55 1.2E-05 41.1 10.1 68 111-178 27-94 (153)
334 PF10602 RPN7: 26S proteasome 94.1 0.31 6.7E-06 45.5 8.9 65 269-333 37-101 (177)
335 PF12968 DUF3856: Domain of Un 93.9 3.2 7E-05 34.6 13.4 89 389-477 22-129 (144)
336 smart00028 TPR Tetratricopepti 93.7 0.11 2.3E-06 32.1 3.8 29 715-743 2-30 (34)
337 KOG3807 Predicted membrane pro 93.7 8.3 0.00018 38.5 19.3 199 201-417 188-403 (556)
338 smart00028 TPR Tetratricopepti 93.7 0.12 2.6E-06 31.8 3.9 30 130-159 3-32 (34)
339 PRK11619 lytic murein transgly 93.6 17 0.00038 42.0 40.6 213 347-583 246-463 (644)
340 PF10602 RPN7: 26S proteasome 93.6 0.8 1.7E-05 42.8 10.6 105 676-782 37-145 (177)
341 KOG2422 Uncharacterized conser 93.6 13 0.00029 40.4 21.3 156 538-706 251-450 (665)
342 PRK11619 lytic murein transgly 93.2 20 0.00044 41.4 38.8 382 41-473 34-464 (644)
343 COG5116 RPN2 26S proteasome re 93.0 16 0.00034 39.7 27.2 192 23-228 40-239 (926)
344 KOG1538 Uncharacterized conser 92.9 8.7 0.00019 42.2 17.8 58 130-187 587-657 (1081)
345 PF12862 Apc5: Anaphase-promot 92.9 0.68 1.5E-05 37.9 8.0 64 686-749 9-76 (94)
346 COG4976 Predicted methyltransf 92.9 0.16 3.4E-06 47.5 4.5 58 172-230 5-62 (287)
347 PF10579 Rapsyn_N: Rapsyn N-te 92.7 0.7 1.5E-05 35.3 7.0 61 718-778 10-71 (80)
348 PRK12798 chemotaxis protein; R 92.7 15 0.00033 38.7 19.6 190 593-798 112-304 (421)
349 KOG3807 Predicted membrane pro 92.6 12 0.00026 37.4 17.7 105 676-787 276-399 (556)
350 KOG2412 Nuclear-export-signal 92.6 1.1 2.4E-05 47.6 10.7 42 845-886 202-243 (591)
351 KOG2114 Vacuolar assembly/sort 92.5 24 0.00051 40.5 29.1 248 274-594 340-596 (933)
352 COG5191 Uncharacterized conser 92.4 0.42 9.1E-06 46.9 7.0 88 152-240 97-185 (435)
353 COG4976 Predicted methyltransf 92.1 0.32 6.9E-06 45.6 5.5 59 137-195 4-62 (287)
354 COG3914 Spy Predicted O-linked 92.0 2.5 5.4E-05 45.9 12.7 128 112-240 49-185 (620)
355 PTZ00266 NIMA-related protein 91.9 0.99 2.2E-05 53.9 10.7 11 922-932 525-535 (1021)
356 KOG4814 Uncharacterized conser 91.6 25 0.00055 38.9 21.4 275 526-825 355-658 (872)
357 KOG0529 Protein geranylgeranyl 91.5 9.6 0.00021 39.8 15.6 162 112-273 47-234 (421)
358 PF13374 TPR_10: Tetratricopep 91.4 0.4 8.6E-06 31.9 4.3 29 715-743 3-31 (42)
359 PF11207 DUF2989: Protein of u 91.3 1.8 3.9E-05 40.4 9.5 78 688-770 119-198 (203)
360 PF13041 PPR_2: PPR repeat fam 91.2 0.99 2.2E-05 31.6 6.3 46 714-760 3-48 (50)
361 PF10579 Rapsyn_N: Rapsyn N-te 91.1 2.3 5E-05 32.6 8.1 62 200-261 9-70 (80)
362 PF13374 TPR_10: Tetratricopep 91.0 0.51 1.1E-05 31.4 4.5 29 751-779 3-31 (42)
363 PF12854 PPR_1: PPR repeat 90.9 0.53 1.1E-05 29.7 4.1 29 38-66 5-33 (34)
364 KOG1144 Translation initiation 90.9 2.6 5.7E-05 46.9 11.7 25 848-872 215-239 (1064)
365 KOG3054 Uncharacterized conser 90.8 2.9 6.3E-05 39.3 10.2 7 903-909 161-167 (299)
366 COG3914 Spy Predicted O-linked 90.7 11 0.00023 41.3 15.7 129 147-279 50-187 (620)
367 KOG1310 WD40 repeat protein [G 90.3 0.63 1.4E-05 49.2 6.2 85 143-228 389-476 (758)
368 KOG2561 Adaptor protein NUB1, 90.2 9.5 0.0002 39.8 14.0 26 838-863 313-338 (568)
369 PF04053 Coatomer_WDAD: Coatom 90.1 10 0.00022 41.4 15.5 131 135-295 268-400 (443)
370 KOG1839 Uncharacterized protei 89.9 2.5 5.5E-05 50.6 11.3 173 346-553 936-1127(1236)
371 COG5191 Uncharacterized conser 89.8 0.54 1.2E-05 46.2 4.9 85 116-201 95-180 (435)
372 PF12862 Apc5: Anaphase-promot 89.5 2.8 6.1E-05 34.3 8.4 60 419-478 8-71 (94)
373 PF07721 TPR_4: Tetratricopept 89.3 0.57 1.2E-05 27.3 3.0 22 716-737 3-24 (26)
374 KOG1839 Uncharacterized protei 89.2 5.8 0.00013 47.7 13.5 107 264-370 969-1085(1236)
375 COG3629 DnrI DNA-binding trans 89.0 8.1 0.00018 38.7 12.6 61 130-190 155-215 (280)
376 PF07721 TPR_4: Tetratricopept 88.8 0.83 1.8E-05 26.6 3.5 25 41-65 2-26 (26)
377 KOG1144 Translation initiation 88.7 2.1 4.6E-05 47.7 8.9 11 857-867 217-227 (1064)
378 PF11817 Foie-gras_1: Foie gra 88.7 28 0.0006 34.8 16.9 86 692-777 155-245 (247)
379 KOG0163 Myosin class VI heavy 88.6 48 0.001 37.4 25.1 21 663-683 764-784 (1259)
380 PF07720 TPR_3: Tetratricopept 88.4 1.6 3.5E-05 27.9 4.8 19 166-184 5-23 (36)
381 PF07720 TPR_3: Tetratricopept 88.4 1.3 2.8E-05 28.3 4.4 33 129-161 2-36 (36)
382 KOG2581 26S proteasome regulat 88.4 35 0.00076 35.6 20.6 137 655-791 140-288 (493)
383 PF10516 SHNi-TPR: SHNi-TPR; 88.4 1.1 2.3E-05 29.1 4.0 29 715-743 2-30 (38)
384 PF11207 DUF2989: Protein of u 88.3 4 8.7E-05 38.2 9.3 59 409-468 140-198 (203)
385 PF12854 PPR_1: PPR repeat 88.1 1 2.2E-05 28.4 3.8 28 748-775 5-32 (34)
386 PF04053 Coatomer_WDAD: Coatom 87.8 34 0.00074 37.5 17.6 27 342-368 347-373 (443)
387 KOG1310 WD40 repeat protein [G 87.7 1.9 4E-05 45.9 7.4 89 107-195 387-478 (758)
388 PF13041 PPR_2: PPR repeat fam 87.5 1.1 2.5E-05 31.3 4.2 45 593-637 3-47 (50)
389 PF04190 DUF410: Protein of un 87.4 34 0.00074 34.4 22.3 46 428-473 69-115 (260)
390 COG3629 DnrI DNA-binding trans 87.4 10 0.00022 38.1 12.1 63 376-438 153-216 (280)
391 COG2912 Uncharacterized conser 87.3 3.3 7.1E-05 40.8 8.5 63 108-170 195-257 (269)
392 KOG3654 Uncharacterized CH dom 87.2 4.5 9.7E-05 42.5 9.7 45 845-889 390-434 (708)
393 PF15015 NYD-SP12_N: Spermatog 87.2 13 0.00027 38.8 12.6 89 166-257 180-285 (569)
394 PF15015 NYD-SP12_N: Spermatog 87.0 3.6 7.9E-05 42.5 8.8 106 455-585 183-288 (569)
395 KOG0529 Protein geranylgeranyl 86.8 25 0.00055 36.8 14.7 136 103-239 84-237 (421)
396 COG1747 Uncharacterized N-term 86.5 52 0.0011 35.6 24.3 99 158-263 62-160 (711)
397 TIGR03504 FimV_Cterm FimV C-te 86.0 1.5 3.3E-05 29.5 3.9 27 43-69 2-28 (44)
398 PRK12798 chemotaxis protein; R 85.5 54 0.0012 34.8 21.4 30 342-371 257-286 (421)
399 KOG2891 Surface glycoprotein [ 85.0 17 0.00038 34.9 11.6 9 807-815 268-276 (445)
400 KOG2581 26S proteasome regulat 84.7 55 0.0012 34.3 17.7 106 270-375 171-280 (493)
401 KOG4364 Chromatin assembly fac 84.1 14 0.0003 40.8 11.8 15 916-930 364-378 (811)
402 KOG4014 Uncharacterized conser 83.9 35 0.00075 31.3 14.3 14 691-704 128-141 (248)
403 COG2912 Uncharacterized conser 83.8 8.9 0.00019 37.9 9.5 64 171-235 190-253 (269)
404 PRK06568 F0F1 ATP synthase sub 83.3 35 0.00075 30.8 12.8 46 839-884 27-72 (154)
405 PRK09174 F0F1 ATP synthase sub 83.1 28 0.00061 33.4 12.5 42 843-884 80-121 (204)
406 PF11817 Foie-gras_1: Foie gra 82.8 49 0.0011 33.0 14.9 91 424-551 153-244 (247)
407 PF11214 Med2: Mediator comple 82.7 25 0.00054 28.7 10.4 17 853-869 58-74 (105)
408 PF04714 BCL_N: BCL7, N-termin 82.5 2.4 5.3E-05 28.7 3.5 38 901-938 8-47 (52)
409 PF04190 DUF410: Protein of un 82.3 59 0.0013 32.8 19.2 154 106-281 69-241 (260)
410 COG0711 AtpF F0F1-type ATP syn 82.3 39 0.00085 31.0 12.8 40 843-882 33-72 (161)
411 PF00244 14-3-3: 14-3-3 protei 82.1 22 0.00047 35.2 11.8 44 165-208 4-47 (236)
412 KOG2891 Surface glycoprotein [ 81.9 21 0.00046 34.3 10.9 7 919-925 408-414 (445)
413 TIGR03504 FimV_Cterm FimV C-te 81.9 1.8 3.9E-05 29.2 2.9 25 718-742 3-27 (44)
414 PRK13454 F0F1 ATP synthase sub 81.7 39 0.00085 31.7 12.9 41 843-883 58-98 (181)
415 PF10255 Paf67: RNA polymerase 81.4 3 6.4E-05 44.2 5.8 63 163-225 123-192 (404)
416 PTZ00121 MAEBL; Provisional 80.3 29 0.00064 42.4 13.4 13 115-127 137-149 (2084)
417 PF10516 SHNi-TPR: SHNi-TPR; 79.8 3.7 8.1E-05 26.6 3.7 29 560-588 2-30 (38)
418 KOG3054 Uncharacterized conser 79.3 23 0.00051 33.6 10.0 16 891-906 142-157 (299)
419 smart00386 HAT HAT (Half-A-TPR 78.3 5.9 0.00013 24.1 4.5 28 212-239 2-29 (33)
420 PRK09510 tolA cell envelope in 77.5 31 0.00067 36.5 11.6 8 823-830 61-68 (387)
421 KOG4691 Uncharacterized conser 77.4 47 0.001 30.3 10.9 30 896-925 140-169 (227)
422 PLN03086 PRLI-interacting fact 77.1 17 0.00036 40.5 10.0 16 869-884 12-27 (567)
423 PF07946 DUF1682: Protein of u 77.0 13 0.00028 38.8 8.9 19 812-830 230-248 (321)
424 KOG2063 Vacuolar assembly/sort 76.5 1.7E+02 0.0038 34.9 18.7 114 307-420 506-636 (877)
425 PRK06231 F0F1 ATP synthase sub 76.5 61 0.0013 31.1 12.6 41 843-883 75-115 (205)
426 PF06098 Radial_spoke_3: Radia 75.8 76 0.0016 32.2 13.4 14 853-866 139-152 (291)
427 PF09205 DUF1955: Domain of un 75.7 25 0.00054 30.3 8.3 60 717-778 88-148 (161)
428 PF00244 14-3-3: 14-3-3 protei 74.9 91 0.002 30.8 14.8 63 130-192 3-67 (236)
429 COG4941 Predicted RNA polymera 74.6 1.1E+02 0.0023 31.4 16.0 171 610-788 213-403 (415)
430 smart00386 HAT HAT (Half-A-TPR 74.5 8.7 0.00019 23.3 4.5 27 143-169 2-28 (33)
431 smart00299 CLH Clathrin heavy 74.2 64 0.0014 28.7 12.1 37 535-571 17-53 (140)
432 PF04097 Nic96: Nup93/Nic96; 73.6 1.8E+02 0.004 33.7 21.8 373 308-785 114-539 (613)
433 KOG3088 Secretory carrier memb 73.5 5.6 0.00012 38.8 4.6 21 891-911 71-91 (313)
434 PF09670 Cas_Cas02710: CRISPR- 73.3 21 0.00045 38.3 9.5 65 43-123 134-198 (379)
435 CHL00118 atpG ATP synthase CF0 73.2 74 0.0016 29.0 12.7 40 843-882 49-88 (156)
436 PF10255 Paf67: RNA polymerase 72.7 36 0.00078 36.4 10.8 64 307-370 124-192 (404)
437 PF07946 DUF1682: Protein of u 72.6 22 0.00048 37.1 9.3 14 818-831 232-245 (321)
438 COG3947 Response regulator con 72.4 16 0.00034 36.3 7.3 59 165-224 282-340 (361)
439 KOG3654 Uncharacterized CH dom 72.3 27 0.0006 37.0 9.5 21 880-900 416-436 (708)
440 KOG0276 Vesicle coat complex C 72.2 30 0.00065 38.1 10.0 105 657-775 623-746 (794)
441 COG1747 Uncharacterized N-term 71.9 1.6E+02 0.0034 32.2 26.0 98 522-622 63-160 (711)
442 KOG0687 26S proteasome regulat 71.4 78 0.0017 32.2 11.8 100 128-227 104-211 (393)
443 PF01535 PPR: PPR repeat; Int 71.2 4.8 0.0001 24.2 2.6 28 42-69 2-29 (31)
444 PRK07352 F0F1 ATP synthase sub 70.9 91 0.002 29.1 12.8 41 843-883 46-86 (174)
445 KOG0686 COP9 signalosome, subu 70.6 1.5E+02 0.0032 31.4 14.8 100 377-476 151-257 (466)
446 PF01535 PPR: PPR repeat; Int 70.6 5.3 0.00012 24.0 2.7 26 678-703 3-28 (31)
447 COG3947 Response regulator con 70.0 26 0.00056 34.8 8.2 63 378-440 281-344 (361)
448 cd00280 TRFH Telomeric Repeat 69.8 54 0.0012 30.3 9.6 133 40-176 13-158 (200)
449 PRK14472 F0F1 ATP synthase sub 69.8 97 0.0021 28.9 12.8 41 843-883 45-85 (175)
450 PF12739 TRAPPC-Trs85: ER-Golg 69.2 1.6E+02 0.0034 32.3 15.3 168 42-228 210-401 (414)
451 PF06936 Selenoprotein_S: Sele 68.6 26 0.00056 32.9 7.7 49 868-916 76-127 (190)
452 PRK14471 F0F1 ATP synthase sub 68.4 99 0.0021 28.5 13.0 41 843-883 35-75 (164)
453 COG4455 ImpE Protein of avirul 68.1 41 0.0009 32.0 8.7 59 137-195 10-68 (273)
454 PF12921 ATP13: Mitochondrial 68.0 64 0.0014 28.1 9.7 80 677-756 4-94 (126)
455 PRK13460 F0F1 ATP synthase sub 67.8 1.1E+02 0.0023 28.6 12.6 38 843-880 43-80 (173)
456 PF12739 TRAPPC-Trs85: ER-Golg 67.4 2E+02 0.0043 31.5 15.7 27 309-335 374-400 (414)
457 KOG4279 Serine/threonine prote 67.3 94 0.002 35.4 12.6 125 559-689 201-334 (1226)
458 PRK08475 F0F1 ATP synthase sub 66.7 1.1E+02 0.0024 28.3 12.4 40 843-882 49-88 (167)
459 PF14863 Alkyl_sulf_dimr: Alky 66.1 18 0.00039 32.1 5.9 52 126-177 68-119 (141)
460 PLN03086 PRLI-interacting fact 65.5 50 0.0011 37.0 10.4 21 866-886 16-36 (567)
461 PRK13455 F0F1 ATP synthase sub 65.4 1.2E+02 0.0027 28.5 13.2 42 843-884 54-95 (184)
462 KOG4279 Serine/threonine prote 65.1 73 0.0016 36.2 11.3 118 127-246 200-335 (1226)
463 CHL00019 atpF ATP synthase CF0 65.0 1.3E+02 0.0027 28.5 13.1 42 843-884 51-92 (184)
464 KOG4014 Uncharacterized conser 64.6 1.2E+02 0.0026 28.0 16.2 188 229-441 32-236 (248)
465 TIGR00756 PPR pentatricopeptid 64.5 17 0.00036 22.4 4.3 26 717-742 3-28 (35)
466 PF10373 EST1_DNA_bind: Est1 D 64.2 25 0.00053 36.0 7.8 61 181-242 1-61 (278)
467 PRK13461 F0F1 ATP synthase sub 64.2 1.2E+02 0.0025 27.8 12.8 41 843-883 32-72 (159)
468 KOG1497 COP9 signalosome, subu 64.0 97 0.0021 31.4 10.8 100 42-154 105-210 (399)
469 COG5536 BET4 Protein prenyltra 63.5 98 0.0021 30.8 10.6 163 111-274 49-233 (328)
470 PF09670 Cas_Cas02710: CRISPR- 63.5 1E+02 0.0023 33.1 12.3 62 527-588 133-198 (379)
471 KOG3756 Pinin (desmosome-assoc 63.2 1.5E+02 0.0032 29.8 11.8 39 889-928 184-222 (340)
472 PF10373 EST1_DNA_bind: Est1 D 63.0 1.8E+02 0.0039 29.6 16.4 62 660-726 1-62 (278)
473 TIGR01144 ATP_synt_b ATP synth 62.8 1.2E+02 0.0025 27.3 12.9 41 843-883 22-62 (147)
474 KOG2114 Vacuolar assembly/sort 62.7 3.1E+02 0.0067 32.2 30.6 57 382-441 711-768 (933)
475 PF13812 PPR_3: Pentatricopept 62.5 8 0.00017 23.9 2.4 29 41-69 2-30 (34)
476 TIGR00756 PPR pentatricopeptid 62.1 12 0.00025 23.1 3.2 29 677-705 2-30 (35)
477 KOG2063 Vacuolar assembly/sort 62.1 3.5E+02 0.0075 32.5 19.9 118 526-644 505-641 (877)
478 KOG3088 Secretory carrier memb 62.0 12 0.00027 36.6 4.4 30 890-919 63-92 (313)
479 PRK13428 F0F1 ATP synthase sub 61.8 1.3E+02 0.0029 33.1 13.0 19 844-862 29-47 (445)
480 cd02680 MIT_calpain7_2 MIT: do 61.7 16 0.00034 28.1 4.1 20 726-745 18-37 (75)
481 PRK13453 F0F1 ATP synthase sub 61.5 1.4E+02 0.003 27.8 12.7 37 844-880 46-82 (173)
482 PRK14475 F0F1 ATP synthase sub 61.5 1.4E+02 0.003 27.7 12.8 40 843-882 37-76 (167)
483 smart00299 CLH Clathrin heavy 60.9 1.2E+02 0.0026 26.9 14.2 39 351-389 16-54 (140)
484 KOG0546 HSP90 co-chaperone CPR 60.6 12 0.00025 38.3 4.2 134 453-611 227-361 (372)
485 KOG3878 Protein involved in ma 60.5 1.9E+02 0.0042 29.1 12.7 17 820-836 104-120 (469)
486 PRK08476 F0F1 ATP synthase sub 60.4 1.3E+02 0.0027 26.9 12.8 41 843-883 34-74 (141)
487 PRK14474 F0F1 ATP synthase sub 60.4 1.9E+02 0.0041 28.9 12.7 92 838-929 27-119 (250)
488 KOG3677 RNA polymerase I-assoc 60.2 2.3E+02 0.005 30.1 13.0 203 193-420 148-353 (525)
489 TIGR03362 VI_chp_7 type VI sec 59.9 2.1E+02 0.0047 29.4 15.8 185 179-370 50-278 (301)
490 KOG0546 HSP90 co-chaperone CPR 59.8 16 0.00035 37.3 5.0 116 312-427 229-361 (372)
491 PRK00247 putative inner membra 59.7 47 0.001 35.8 8.7 59 864-922 329-387 (429)
492 PF13812 PPR_3: Pentatricopept 59.5 16 0.00035 22.5 3.4 31 675-705 1-31 (34)
493 COG4455 ImpE Protein of avirul 59.4 1.7E+02 0.0037 28.1 12.4 115 169-304 8-141 (273)
494 PF10952 DUF2753: Protein of u 58.5 79 0.0017 27.0 7.8 68 717-784 4-88 (140)
495 PF15437 PGBA_C: Plasminogen-b 58.2 83 0.0018 24.2 7.1 46 871-916 37-82 (86)
496 KOG4422 Uncharacterized conser 58.0 2.6E+02 0.0057 29.8 35.9 386 115-557 194-625 (625)
497 PF10037 MRP-S27: Mitochondria 58.0 1.6E+02 0.0034 32.1 12.3 130 660-792 51-180 (429)
498 TIGR03321 alt_F1F0_F0_B altern 57.9 2.1E+02 0.0045 28.6 12.8 92 838-929 27-123 (246)
499 PF13025 DUF3886: Protein of u 56.9 50 0.0011 24.9 5.8 38 871-908 16-53 (70)
500 KOG0686 COP9 signalosome, subu 56.8 1.3E+02 0.0028 31.8 10.7 125 238-365 117-252 (466)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-110 Score=885.39 Aligned_cols=883 Identities=42% Similarity=0.679 Sum_probs=823.3
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHH
Q 002286 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (942)
Q Consensus 1 ~~~~~ip~~~~~~~~~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 80 (942)
|+||+|||++++|||+||+++|| |++|+++||++|.+++++|+.+|..|+++|+.++++.+|+.++. +...+|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLI-DANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhh-cccchhcchHH
Confidence 57999999999999999999999 99999999999999999999999999999999999999999983 44567888899
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~ 158 (942)
+.+.++..||.+|...|........+++.+..|+.+|+.+.+++......++..+..++..|.. +.|...|..+++.+
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999999988866 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
|+|+.++++.|.+.+..|+|..|+.+|+.++..+|...+++++++|.|++++|+.+.|+..|+++++++|.++.++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 318 (942)
.+.+...+...+..++..+.+++..+|.+|.++..|+..|+..|+|..+..+...++..+...+..+++++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 002286 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (942)
|+|++|..+|.++++. .+..+..+++++|++|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999986 6789
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
|..++.++++..|.+..+|+.++.++..+|+..++.+|..++.++...+..+++++++++|..++..|++.+|..+|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999888888899999999999999999999999999999
Q ss_pred hhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 002286 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (942)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (942)
+.........+ .......+..|++|++++..++++.|.+.|..++..
T Consensus 479 ~~~~~~~~n~d---------------------------------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANKD---------------------------------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCcc---------------------------------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 88421000000 001234678999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC-CchhHHHh
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 633 (942)
+|.+.++++++|.+....++..+|..+++.++..+..+|.++..+|.+|++..+|..|..-|+.+++.... +|.|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875543 59999999
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
|||+ |+...+...++++.+++.+++|++.|.++|+.+|.|.+|.+|+|.+++..|++.+|+++|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+++|+|+||||+.+|+|..||++|+.++++|...+++.++.+||++|+..|++.+|+.++.+++++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002286 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE-EQQ 872 (942)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~ 872 (942)
+++.+..+++..++|++++..++.+|+.|+++|.+|+..++. +|+++.+.+++++|+++++++..|..+++++ |++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998744 7999999999999999999999998887665 555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Q 002286 873 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKARIFY 929 (942)
Q Consensus 873 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (942)
+++|+ +++++.++.+|++|++||++..++..++|++|.+...+..+.|-+..+.|+.
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~ 896 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKK 896 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhh
Confidence 54444 5566667778899999999999999999988888888888888888888875
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-54 Score=535.05 Aligned_cols=703 Identities=21% Similarity=0.236 Sum_probs=463.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHH
Q 002286 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEE 108 (942)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~ 108 (942)
+..++...|.....|+.+|..++..|++++|+.++++++..+|. ...++..+|.++...|...
T Consensus 148 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~-------- 210 (899)
T TIGR02917 148 YEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG---------NVDALLLKGDLLLSLGNIE-------- 210 (899)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHhcCCHH--------
Confidence 33344455666667777777777777777777777766655442 2335555666666665544
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
+|+..|++++..+|.++.+++.++.++...|++++|...++.+++..|+++.+++..|.+++..|++++|+..|+++
T Consensus 211 ---~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 211 ---LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred ---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+..+|+. ...++.+|.++...|++++|...|.+++...|.+..++..++.++...|+ +++|+..+.+++..+|.++
T Consensus 288 l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 363 (899)
T TIGR02917 288 LKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDP 363 (899)
T ss_pred HHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCH
Confidence 5555444 22334444445555555555555555544444444444444444444444 4444444444444444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------------
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN------------ 336 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------------ 336 (942)
..+..++.++...|++++|..++++++... |..+..+..+|.++...|++++|+..+.+++...+
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 444444444444444444444444444322 22233333333333333333333333333322110
Q ss_pred -------------------CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 337 -------------------KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 337 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
..|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2345556667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 398 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.|++++..+|.+..++..++.++ ..|++++|+..+.+++...|. ....+..++.++...|++++|+..+++++.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777 777777777777776655433 345566666666677777777777766665
Q ss_pred cchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (942)
..+... ............ ......+..... ..|.++.++..++.++...|++++|...|++++
T Consensus 596 ~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 596 AAPDSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred cCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 322100 000000000000 011111221111 456677888889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
..+|++..++..++.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|++++...|+. ....
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 740 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAI 740 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHH
Confidence 99999888999999999999999999999999988888888899999999999999999999999998887764 4556
Q ss_pred hhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 002286 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (942)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (942)
.++.+ +... |++++|...+++++..+|+++.+++.+|.++...|++++|+.+|+++++..| +
T Consensus 741 ~l~~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~ 802 (899)
T TIGR02917 741 KLHRA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----D 802 (899)
T ss_pred HHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----C
Confidence 67777 7777 8999999999999999999999999999999999999999999999999887 7
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
++.++.++|+++...|+ .+|+.++++++.. .+.++.++..+|.+++..|++++|..+|+++++..|.++.++++++.
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 78899999999999999 8899999999988 45567788899999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 002286 793 AMQKFSA 799 (942)
Q Consensus 793 ~~~~~~~ 799 (942)
++...+.
T Consensus 880 ~~~~~g~ 886 (899)
T TIGR02917 880 ALLATGR 886 (899)
T ss_pred HHHHcCC
Confidence 7665543
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-54 Score=526.64 Aligned_cols=736 Identities=20% Similarity=0.212 Sum_probs=565.7
Q ss_pred CCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchh
Q 002286 20 DQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKI 99 (942)
Q Consensus 20 ~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 99 (942)
.+.++....+...++..|..++.|+.+|.+|+.+|++++|+..+++++...|+. ...+..++.+|...|+.
T Consensus 36 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK---------NQVLPLLARAYLLQGKF 106 (899)
T ss_pred CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------hhhHHHHHHHHHHCCCH
Confidence 455667778888888899999999999999999999999999999998765532 22333444444444433
Q ss_pred hhhhh------------------------hhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 100 ETKQR------------------------EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155 (942)
Q Consensus 100 ~~~~~------------------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 155 (942)
+.... .+.|++++|...|++++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21100 123445589999999999999988999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 156 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
..+|.+..++..+|.++...|++++|+..|++++..+|.+ +.++..++.++...|++++|...++++++..|+++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (899)
T TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265 (899)
T ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999999999999999999999988 677888899999999999999999999998898888888
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 315 (942)
..|.++...|+ +++|+..+++++..+|.+..++..++.+++..|++++|...+.+++... |....++..++.++
T Consensus 266 ~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~ 339 (899)
T TIGR02917 266 LKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQ 339 (899)
T ss_pred HHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHH
Confidence 88888888888 8999999999999998888888888889999999999999998888754 45567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (942)
...|++++|+..+..++. ..|.....+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|
T Consensus 340 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Confidence 899999999998888886 45666777888888999999999999999999888888888888899999999999999
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 396 ~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
+..+.+++...|+.......++..+ ..|++++|+..+.+.....|. ++.++..+|.++...|++++|+..|+++
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998888888888888888888 888888888888887664332 5678888899999999999999999998
Q ss_pred hhcchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHH
Q 002286 475 LGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (942)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (942)
+...+.... ........... ......+..+.. ..|.+..++..++.++...|++++|...+.+
T Consensus 492 ~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 492 LSIEPDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HhhCCCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 874331100 00000000000 011122222221 3455667777777777777777777777777
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH
Q 002286 551 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 551 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
++..+|.+...+..++.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..|++++...|. +..+
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776665 4556
Q ss_pred HHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 002286 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 710 (942)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 710 (942)
+..+|.+ |... |++++|+..|++++..+|++..++..++.++...|++++|+.+++.+.+..|
T Consensus 638 ~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 700 (899)
T TIGR02917 638 LLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---- 700 (899)
T ss_pred HHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence 6667776 6666 7777777777777777777777777777777777777777777777777665
Q ss_pred CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 711 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 711 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
.++.++..+|.++...|++++|+..|+.++...|.+ .++..++.++...|++++|.+.+++++...|+++.+++++
T Consensus 701 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 776 (899)
T TIGR02917 701 -KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL 776 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 566777777777777777777777777777764332 5666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 002286 791 GVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (942)
Q Consensus 791 a~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 833 (942)
|.++... +..++|+.+|.++....
T Consensus 777 a~~~~~~-------------------g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 777 AELYLAQ-------------------KDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHC-------------------cCHHHHHHHHHHHHHhC
Confidence 7764433 44566777887776643
No 4
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-45 Score=444.93 Aligned_cols=652 Identities=14% Similarity=0.117 Sum_probs=535.5
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHH
Q 002286 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (942)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~ 116 (942)
+.+...++..+.....+++.+.|.+.|.+++..+|+ ...++..++.+++..|+.+ +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------NPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 445667899999999999999999999999988773 3667888899998888877 99999
Q ss_pred HHHHhhcCCCCcchH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCChH
Q 002286 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~ 179 (942)
++++.+.+|+++.++ +.+|.++...|++++|+..|++++..+|.+.. +......+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788999999999999999999999888764 2223333344569999
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-------------
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------- 246 (942)
+|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111110111111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHH
Q 002286 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (942)
Q Consensus 247 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (942)
......|...+.+.....++.......+|..+...|++++|+..+++++... |.++.++..+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 1113344444444433322222233456888999999999999999999865 667899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002286 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (942)
+|+.+|+++++..+..+.. ......+|.++...|++++|+..|++++..+|++..++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854433221 11224558889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG----EEVPIEVLNNIGVIHFEKGEFESA 467 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 467 (942)
+++|+..|+++++.+|++..++..++.++..+++++|+.+++.+....+... .......+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999955688999988876543322110 011234567789999999999999
Q ss_pred HHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHH
Q 002286 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (942)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (942)
+..|++++. ..|.++.+++.+|.++...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 6788899999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC----------hhHHHHhhhhhccccchHHHHHHHH
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+++++..+|+++.+++.++..+...+++++|+..++++.....+. ......++..+...|++++|+..++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998764332111 1123456888899999999999987
Q ss_pred HhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002286 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (942)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 697 (942)
..|. +...+..+|.+ |... |++++|+..|++++..+|+++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55667889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC----CHHHHHHHHHHHHHcccHHHHHHHH
Q 002286 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 773 (942)
+++++...| +++.++..+|.++...|++++|+..|+.++...+..+ ++.++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877 7889999999999999999999999999999865433 2456777899999999999999999
Q ss_pred HHHHH
Q 002286 774 LRAIH 778 (942)
Q Consensus 774 ~~al~ 778 (942)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99986
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.8e-45 Score=442.72 Aligned_cols=622 Identities=17% Similarity=0.089 Sum_probs=506.4
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+...+.++...++.+ .|...+.+++.++|+++.++..++.+++..|++++|...++++++.+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 445666677777776665 999999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh
Q 002286 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (942)
Q Consensus 163 ~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (942)
.+. +.+|.++...|++++|+..|++++..+|............+....|++++|+..|+++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678889999999999999999999988873322222333344569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----
Q 002286 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (942)
Q Consensus 227 ~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 302 (942)
+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544332211111111122223333333333322221111
Q ss_pred -------------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
+.......+|.++...|++++|+..|+++++ ..|....++..+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 567888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
+.+|++.. ....+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99997642 2235588889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccC
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (942)
++...|. +..++..++.++. .+++++|+.+++......+. . ....
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-~----------------------~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-S----------------------IDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-H----------------------HHHH------
Confidence 9988655 4677888888875 56789999888765432100 0 0000
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..+++++..+|+++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchh---------HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
+++.++.++...|++++|+..++++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12234555 5555 99999998876
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
.+|.++.++..+|.++...|++++|+..|+++++..| +++.+++++|.+|...|++++|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 746 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
.+.++.++..+|.++...|++++|.+.|++++...|+++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 4556788999999999999999999999999999887654
No 6
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=367.06 Aligned_cols=583 Identities=16% Similarity=0.164 Sum_probs=512.9
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++.|...|..+++..|++...+++.|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.+.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999965 577899999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
++++|.+ ..++..+|.+-.... .+..+...+.++...+|.||.++..|+..++..|+ |..+..+...++....
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 777787877766554 57789999999999999999999999999999999 9999999999988764
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 266 YC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 266 ~~---~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
.. ...++.+|.+|..+|++++|..+|..++...+.+ ..-.++.+|..+...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 44 3569999999999999999999999999876444 356788999999999999999999999998 567888
Q ss_pred hhhhcHHHHHHHcC----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH
Q 002286 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (942)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 413 (942)
.....+|.+|...+ ..+.|..++.+++...|.+.++|..++.++....-+.. +..|..++.. .+--+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88889999998886 67889999999999999999999999999877655544 9999988843 34567889
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 414 IDLGELL-ISSDTGAALDAFKTARTLLKKA-----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
.++|.+. ..|++.+|...|..+....... +......+.++++.++-..++++.|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 9999999999999999883321 1123445789999999999999999999999998
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 567 (942)
.+|.....+..+|.+....++..+|..+++.++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 678899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhcC--CChhHHHHhhhhhccc------------cchHHHHHHHHHhhccCCCCchhHHHh
Q 002286 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (942)
Q Consensus 568 ~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (942)
++.....+..|.+-|...++.-. .++.+...||++++.. +.+++|+..|.++++.+|. +.|+..+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999998877776543 3455666778876542 3478999999999999998 8899999
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
+|.+ +... |++.+|..+|.++.+...+++.+|.++|.||..+|+|..|++.|+.+....-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999999888899999999999999999999999999999887422 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g 764 (942)
+.++..||.+++..|.+.+|.+....++.. .+.++.+.+++|.+..+.+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 999999999999999999999999999999 4566778899988877643
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-46 Score=378.57 Aligned_cols=463 Identities=19% Similarity=0.253 Sum_probs=366.9
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHH
Q 002286 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (942)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~ 116 (942)
+......+.+|--.++.|+|.+|++.....-..+|.. ...+..++.++++..+.+ .....
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---------~~~llll~ai~~q~~r~d-----------~s~a~ 104 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---------TERLLLLSAIFFQGSRLD-----------KSSAG 104 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc---------ccceeeehhhhhcccchh-----------hhhhh
Confidence 3344456777777788888888888777766655422 223445566666655544 45555
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 196 (942)
-..+++.+|.-.+++-++|.++-..|++++|+..|+.+++..|++.++|..+|.++...|+...|..+|..+++++|..
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l- 183 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL- 183 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-
Confidence 5567777777777777788888888888888888888888888888888888888888888888888888888888877
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
..++..+|..+-..|+..+|..+|.++++..|....+|..||.++..+|+ ...|+..|+++++++|..+
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge---i~~aiq~y~eAvkldP~f~-------- 252 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE---IWLAIQHYEEAVKLDPNFL-------- 252 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcch---HHHHHHHHHHhhcCCCcch--------
Confidence 55677777777778888888888888888888777778888888777777 7778888888877777766
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
.+|+++|.+|-..+.++.|+..|.+++. ..|....++-++|.+|+.+|
T Consensus 253 -----------------------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG 300 (966)
T KOG4626|consen 253 -----------------------------DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQG 300 (966)
T ss_pred -----------------------------HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccc
Confidence 5566666777777777777777777776 56777778888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (942)
..+-|+.+|+++++..|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++..++|.++ +.|.++.|...|.++
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888 888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCC
Q 002286 436 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515 (942)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (942)
+..+|. -...++++|.+|.++|++++|+.+|+.++.
T Consensus 381 l~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--------------------------------------- 416 (966)
T KOG4626|consen 381 LEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR--------------------------------------- 416 (966)
T ss_pred HhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh---------------------------------------
Confidence 887776 367888888888888999999999998888
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH
Q 002286 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 516 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 595 (942)
+.|....++.++|..|..+|+.+.|+..|.+++..+|..++++.+||.++...|+..+|+..|+.++++.|+.+++
T Consensus 417 ----I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 417 ----IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred ----cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 6788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchHH
Q 002286 596 LSMLGDLELKNDDWVK 611 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~ 611 (942)
+.++..++.-..+|..
T Consensus 493 ~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHhcccc
Confidence 8888887665554433
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-45 Score=371.26 Aligned_cols=460 Identities=20% Similarity=0.254 Sum_probs=325.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
.......++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ...+-.+|.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~aN~ 125 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLANI 125 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHHHH
Confidence 334455566666666666666666666666666666666666666666666666666666666666665 5555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
+...|+++.|+..|+.++++.|++.++|..+|.++...|+ ...|..+|..+++++|+..
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~------------------ 184 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY------------------ 184 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh------------------
Confidence 6666666666666666666666666666666666666665 5555555555555555433
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
-+...+|..+-..|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..|+
T Consensus 185 -------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 185 -------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred -------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 2233344444455555555555555444 334444444445554444455444555555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCC
Q 002286 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 446 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 446 (942)
++++++|+..+++.+||.+|...+.++.|+..|.+++...|++
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------------------- 285 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------------------- 285 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------------------
Confidence 4444444444444444444444444444444444444444443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchh
Q 002286 447 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526 (942)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (942)
..++-++|.+|+.+|..+-|+..|++++. ..|..+.
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~ 321 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPD 321 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchH
Confidence 45566667777777777777777777777 5677888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccc
Q 002286 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (942)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 606 (942)
++.++|.++...|+..+|..+|.+++..+|+++++..+||.++..+|.+++|..+|.+++..+|....+..++|.+|..+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 88888888888888889999999999999999999999999999999999999999999999998888899999998889
Q ss_pred cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002286 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (942)
Q Consensus 607 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (942)
|++++|+..|+.++++.|. -..++..+|+. |... |+.+.|++.|.+++..+|....+..+||.+|.
T Consensus 402 gnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred ccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 9999999999999888876 66778889999 8888 99999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCH
Q 002286 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 730 (942)
Q Consensus 687 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 730 (942)
..|+..+|+..|+.++...| +.|+++.|+++++.-..++
T Consensus 468 DsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 99999999999999999998 8899999999887655433
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.6e-40 Score=376.97 Aligned_cols=663 Identities=11% Similarity=-0.004 Sum_probs=518.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+..|..+...|++++|+..|+.++..+|+ ...++..|+.+|+..|+.. +|+..++++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~kA 104 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHHH
Confidence 46788888888899999999999999998874 3667899999999999988 999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHhcCChHHHHHHHHHHHHhC
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~~l~~~ 192 (942)
++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+...+++. .+.+..+
T Consensus 105 v~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~ 178 (987)
T PRK09782 105 LKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAAS 178 (987)
T ss_pred HhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCC
Confidence 99999888888777666 999999999999999999999999999998 666655555554 3333323
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-ccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
|.. ..+.+.++.+|..+|++++|+..+.++++..|.+...+..|+.+|... ++ +.+...+...+ ..++.++
T Consensus 179 ~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~l---k~d~~l~ 250 (987)
T PRK09782 179 PEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGI---FTDPQSR 250 (987)
T ss_pred CCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhc---ccCHHHH
Confidence 333 556777799999999999999999999999999999999999988873 43 66666655422 3788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
..++..+...|+.++|...+...-......|......+.+++..... ..|...|.+= ..++...+...+...
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999997766666677666777776654432 2333333331 224445556667889
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (942)
+...++++.+..+ +...|.++. ...........+.+.++...+....+..|.+......++... ..|+.++|..
T Consensus 323 ~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 323 LLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999955533 456677664 222222233457888888889988888899999999999999 9999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcc--hhhhhccccccchhhhhhhhhHhhhhh
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGDG--IWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
.|+.+... +. ....+..+...++.++...+. ...++..-..+-... .+...... ..
T Consensus 398 ~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~ 458 (987)
T PRK09782 398 LLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG-----------------IA 458 (987)
T ss_pred HHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh-----------------hh
Confidence 99998875 22 122245666688999988877 333333321111000 00000000 00
Q ss_pred hhhhhhccCCCCCCCCCc--chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 506 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..+..+ .......|. .+.+++++|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++
T Consensus 459 ~~~~~~---~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 459 DNCPAI---VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhHHHH---HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 000000 001114466 88999999999988 899999999999999999864 46667788889999999999999
Q ss_pred HHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHH
Q 002286 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (942)
Q Consensus 584 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (942)
++....|. ...+..+|.++...|++++|...|.+++...|.. ......++.. .... |++++|+..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~-l~~~------------Gr~~eAl~~ 598 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQ-RYIP------------GQPELALND 598 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHH-HHhC------------CCHHHHHHH
Confidence 98776555 4567889999999999999999999999987663 3333333333 3334 899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
|+++++.+|+ ..++..+|.++.+.|++++|+..|++++...| +++.++.++|.++...|++++|+..|+++++.
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999996 88999999999999999999999999999998 88999999999999999999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
.|.++.+++++|.++...|++++|+..|++++.+.|++..+.+-.+.+.+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 5677899999999999999999999999999999999999999888865443
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=353.21 Aligned_cols=652 Identities=12% Similarity=0.021 Sum_probs=506.6
Q ss_pred CCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh
Q 002286 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (942)
Q Consensus 23 p~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~ 102 (942)
.+....+..+++.+|.+..+++.+|..|...|++++|+..+++++..+|.. ...+..|+.+ +
T Consensus 61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~----- 122 (987)
T PRK09782 61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P----- 122 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c-----
Confidence 445667777888899999999999999999999999999999999988732 2233334443 3
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 174 (942)
++.+|+..|++++..+|.+..+++.++.. |.+.+...+|+. .+.+..+|......+.++.+|..
T Consensus 123 ------~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 123 ------VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ------cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence 34499999999999999999999999998 666655555555 33333344455567777999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
+|+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .++|
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A 266 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARL 266 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHH
Confidence 999999999999999999999 6768889999988 577 888888665333 788999999999999999 6777
Q ss_pred HHHHHHH---HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 254 MEKMQRA---FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 254 ~~~~~~~---~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
...+.+. ....|.+..-++.++...... ..+..-+.+ ...+..-..+......+...++++-+..+.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 336 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKLL-- 336 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHHh--
Confidence 6666554 334466665555555443221 111111111 011222344555677888888888555441
Q ss_pred HHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 002286 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD- 409 (942)
Q Consensus 331 a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 409 (942)
.. .|.... ....-......+.+.++........+..|.+...+..++....+.|+.++|...|+.+....++.
T Consensus 337 ~~-----~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 337 AT-----LPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred cC-----CCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 11 233322 11112223345788888888888888889999999999999999999999999999988753222
Q ss_pred --HHHHHHHHHHH-hcCC---HhHH----------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002286 410 --AQAFIDLGELL-ISSD---TGAA----------------------LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 461 (942)
Q Consensus 410 --~~~~~~la~~~-~~~~---~~~A----------------------~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (942)
......++.++ ..+. ..++ ...+..+....+.......+.++.++|.++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 23444677776 4433 2222 23333333433321111267899999999988
Q ss_pred CCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCH
Q 002286 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 541 (942)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 541 (942)
+++.+|+..|.+++.. .|.. .....+|.++...|++
T Consensus 490 ~~~~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 490 TLPGVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDY 525 (987)
T ss_pred CCcHHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCH
Confidence 8999999999999873 3433 3466678888899999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhc
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (942)
++|+..|++++...|.. ..++.+|.++...|++++|..++++++..+|.+...+..++......|++++|+..|++++.
T Consensus 526 eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 526 ATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999987775654 56788999999999999999999999999999988887777777788999999999999999
Q ss_pred cCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002286 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (942)
Q Consensus 622 ~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (942)
..|. ..++..+|.+ +... |++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++
T Consensus 605 l~P~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 605 IAPS--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred hCCC--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9985 6677889988 8888 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 702 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 702 ~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
++..| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++...+|
T Consensus 670 L~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 670 HKGLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99998 88999999999999999999999999999998 556688999999999999999999999999999999
Q ss_pred CChhhHhhHHHH
Q 002286 782 SNYTLRFDAGVA 793 (942)
Q Consensus 782 ~~~~~~~~la~~ 793 (942)
... +....+-+
T Consensus 743 ~~~-a~~~~g~~ 753 (987)
T PRK09782 743 DSS-IGLRSGAM 753 (987)
T ss_pred cch-hccccchH
Confidence 876 55555554
No 11
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-31 Score=317.66 Aligned_cols=669 Identities=14% Similarity=0.065 Sum_probs=541.6
Q ss_pred hccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHH
Q 002286 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (942)
Q Consensus 35 ~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~ 114 (942)
..+++...+..+...|.+.|++++|..+|+.+......+ + ...+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-------~-~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-------D-EDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-------C-hhHHHHHHHHHhhCCCHH-----------HHH
Confidence 345566778888999999999999999999887643211 0 123344444455555444 888
Q ss_pred HHHHHHhhcCCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
.++..+++..+. +......+...|.+.|+.+.|...|+.+. +.+...|..+...+.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999988877654 34455667778899999999999999874 34677899999999999999999999999987542
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 272 (942)
......+..+...+...++...+...+..+++... .+...+..+...|.+.|+ ++.|...|++.. ..+..+|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22234566666777788999999999988877542 356678888899999999 999999998764 34668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 352 (942)
.+...|...|++++|..++..+.... ..| +..++..+...+...|+.+.|.+++..+.+. ........+..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g-~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS-VDP-DLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998754 223 4567888888999999999999999999864 2234567789999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH-hcCCHhHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~ 429 (942)
.+.|++++|...|+.+. ..+..+|..+...|.+.|++++|+..|+++.... |+.. .+..+-..+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 99999999999999874 3456789999999999999999999999987654 6554 444445566 999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
..+..+.+. +...+..+++.+...|.+.|++++|...|++...
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999887653 4445678999999999999999999999988643
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.+..+|..+...|...|+.++|..+|+++....+.+..++..+...+...|+.+.+...+..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2456788899999999999999999999987656666788888888999999999999999988875
Q ss_pred -CCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
..+..+...+...|.+.|+.++|...|+.+ ..+..++..+... |... |+.++|+++|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 345567778899999999999999999986 3477888889888 9988 99999999999998
Q ss_pred hcCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 669 VQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 669 ~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
.... .|...+..+...+.+.|.+++|..+|+.+.+..+-. .+...|..+..++.+.|++++|.+.++++ |..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 8652 256667888888999999999999999999655311 35678999999999999999999998875 456
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~ 827 (942)
+++.++..|..++...|+.+.+....++++++.|+++..+..++.+|...+. .++|.++.+
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~-------------------~~~a~~vr~ 715 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK-------------------WDEVARVRK 715 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC-------------------hHHHHHHHH
Confidence 7888999999999999999999999999999999999988888887654433 455666666
Q ss_pred HHhhCC
Q 002286 828 HLSAAS 833 (942)
Q Consensus 828 ~l~~~~ 833 (942)
.+...+
T Consensus 716 ~M~~~g 721 (857)
T PLN03077 716 TMRENG 721 (857)
T ss_pred HHHHcC
Confidence 665554
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.3e-33 Score=317.54 Aligned_cols=445 Identities=17% Similarity=0.131 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002286 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (942)
Q Consensus 84 ~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 163 (942)
..+..+|..|+..|+.. +|+..|++++...|+ +..+..+|.+|...|++++|+..+.++++.+|++..
T Consensus 128 ~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~ 195 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH
Confidence 34556666666666555 999999999999995 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++.+|.++...|++++|+..|..+...++.........+... . ...+......+++..|.+...+..++..+..
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL-L----KKFAESKAKEILETKPENLPSVTFVGNYLQS 270 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH-H----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999888777655422211111111 1 1345566677777888877676666665432
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 320 (942)
.. ...+...+......+|.....+..++.... ..+.|++|+..|+.++......|....++..+|.++...|+
T Consensus 271 ~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 271 FR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK 346 (615)
T ss_pred cc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence 21 222233344445556665555555554433 35789999999999998766667888899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
+++|+..|++++. .+|....+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 347 ~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 347 HLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998 5788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
+++.++|++..++..+|.++ ..|++++|+..|++++...|. .+.+++.+|.++...|++++|+..|++++...+
T Consensus 424 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999 999999999999999987665 588999999999999999999999999998532
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH-HHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
... ........+...+. ++...|++++|..++++++..+|++
T Consensus 499 ~~~-------------------------------------~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 499 ETK-------------------------------------PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred ccc-------------------------------------cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 100 00001112233333 3444699999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
..++..+|.++...|++++|+.+|++++++.+...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 889999999999999999999999999988776544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.1e-33 Score=316.72 Aligned_cols=436 Identities=15% Similarity=0.129 Sum_probs=347.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.++...|++++|+..+.++++.+|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 34667899999999999999999999999995 7789999999999999999999999999999998 777899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~ 288 (942)
.+|++++|+..|..++..++.+......+..... ...+...+...+...|.+...+..++..+... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998887776654433222211111 22344556666777777766666666644222 111111
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
..+.... ...+.....+..++..+ ...+++++|+..|++++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111 12233334455555443 33578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
++++..+|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999987665
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
+...+..+|.++...|++++|+..|++++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 577888999999999999999999999988 56778
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH------HHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
+.++..+|.++...|++++|+..|++++...|..... +...+.. +...|++++|..++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988865322 2222333 33468999999999999999999998999
Q ss_pred HhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
.+|.++...|++++|+..|++++++.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
No 14
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=7.2e-31 Score=279.12 Aligned_cols=674 Identities=17% Similarity=0.155 Sum_probs=411.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHH
Q 002286 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (942)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~ 119 (942)
+.-.+..|...+.+|++++|+.++.+++..+|. ...++..||.+|-.+|+.+ ++...+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 445677777778888888888888888777662 2456777888887777766 77777777
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 196 (942)
|-.++|++.+.|..++....++|++++|+-+|.++++.+|.+....+..+.++.+.|++..|...|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888888877321
Q ss_pred -hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh--CCC-----
Q 002286 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--YPY----- 266 (942)
Q Consensus 197 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~----- 266 (942)
.+.-...+..+...++-+.|...++.++.... ...+-+..++.+++.... ++.|.......... .++
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12223356667777777778887777776322 223345566666666655 66666555443330 000
Q ss_pred ---------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHH
Q 002286 267 ---------------------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (942)
Q Consensus 267 ---------------------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (942)
+..+ ..+..++......+....+..............++.++.++.++...|++.+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 1111 122333333333333333333333222223444566666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
.+|..+... ....+...|+.+|.+|...|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.+.....-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 666666642 112224456666666666666666666666666666666666666666666666666666666665422
Q ss_pred CcC---------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHH
Q 002286 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN--IGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 406 ~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 473 (942)
++. ..........++ ..|+.++=+......+..+....... +..... .+..-...+.+.+-......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f-~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF-PRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHhhccccccccchhHHHHHH
Confidence 211 122333444455 55555553333333322211100000 000000 00000001111111111111
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch----hHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV----TVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
+..........+... .+... ........... .....+..++.+.+++.+|..+..
T Consensus 592 ~~~k~~~~~~~~~~l--------------~d~~~-------~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 592 AREKATDDNVMEKAL--------------SDGTE-------FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhccCchHHhhhcc--------------cchhh-------hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111110000000000 00000 00000111122 344456778889999999999999
Q ss_pred HHHHhCC----Cc-H-HHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 550 LILFKYQ----DY-V-DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 550 ~~l~~~p----~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
.++...- .. . ...+....+....+++..|..+++.++.. +|..+..|...-......++-.--...+..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887432 11 1 22333445567789999999999999988 566666666444455556665555566666
Q ss_pred hhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---------
Q 002286 619 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--------- 689 (942)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--------- 689 (942)
+....++.+.......|.. .+.. +.+..|+..|-++...+|++|..-..+|..+.+..
T Consensus 731 ~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh 797 (895)
T KOG2076|consen 731 LLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRH 797 (895)
T ss_pred HhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6666666556555666777 7777 89999999999999999999998888887776532
Q ss_pred -CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--------CC--HHHHHHHHH
Q 002286 690 -QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLAR 758 (942)
Q Consensus 690 -~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~~~~~~l~~ 758 (942)
..-+++.++.+..+..... ...++.+|+|.+|...|-..-|+.+|+++|...|.+ -+ -.+.++|..
T Consensus 798 ~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~L 874 (895)
T KOG2076|consen 798 AQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHL 874 (895)
T ss_pred HHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhh
Confidence 3456677777766655311 367899999999999999999999999999975332 12 678899999
Q ss_pred HHHHcccHHHHHHHHHHHH
Q 002286 759 THYEAEQWQDCKKSLLRAI 777 (942)
Q Consensus 759 ~~~~~g~~~~A~~~~~~al 777 (942)
+|...|+..-|.+++.+-+
T Consensus 875 IY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 875 IYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhccCCcHHHHHHHHHhhc
Confidence 9999999999999987754
No 15
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-30 Score=305.75 Aligned_cols=640 Identities=14% Similarity=0.054 Sum_probs=529.9
Q ss_pred ChhHHHHHHHhc--cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh
Q 002286 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (942)
Q Consensus 25 ~~~~~~~~l~~~--~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~ 102 (942)
++..+.+.+... +.+...+..+...+...+.++.+..++..++...+.. ...+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 444444444442 3556677888888899999999999999877654321 1335677788888888877
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHH
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSD 180 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~ 180 (942)
.|...|+++.. .+..+|..+...|.+.|++++|+.+|+++... .| +...+..+...+...+++..
T Consensus 139 ---------~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 139 ---------HAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred ---------HHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhh
Confidence 89999998753 47789999999999999999999999999864 34 45556666667778899999
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.+++..+++........++..+..+|.+.|+++.|...|+++.. .+...|..+...+.+.|+ +.+|+..|.+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M 279 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTM 279 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 999999998876544466788899999999999999999998643 356779999999999999 99999999999
Q ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 002286 261 FEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (942)
Q Consensus 261 ~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 339 (942)
.... ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|...|++++|...|+.+..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------ 351 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------ 351 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------
Confidence 8753 3456788888889999999999999999988754 233568899999999999999999999998652
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDL 416 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 416 (942)
.....|..+...|.+.|++++|+..|+.+.... |+ ..++..+...+...|+++.|...+..+.+.. ..+..++..+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 245678999999999999999999999987654 54 4456666678899999999999999999875 3467788899
Q ss_pred HHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhh
Q 002286 417 GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (942)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 495 (942)
...| ..|++++|...|+++.+ .+...|+.+...+...|+.++|+..|.++...
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------ 484 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------ 484 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------------------
Confidence 9999 99999999999987532 24568899999999999999999999999752
Q ss_pred hhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC
Q 002286 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~ 574 (942)
..| +..++..+...+...|+.+.+.+++..+++... .+...+..+..+|.+.|+
T Consensus 485 ------------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 485 ------------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred ------------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 334 555666677788899999999999999988542 345667788899999999
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHH
Q 002286 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 654 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~ 654 (942)
.++|...|+.. +.+..+|..+...|.+.|+.++|+..|+++...+..++..++..+... |...
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------ 602 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------ 602 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------
Confidence 99999999886 667889999999999999999999999999987777777777777777 8887
Q ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 002286 655 THLEKAKELYTRVIVQH--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (942)
|..++|..+|+.+.+.. ..+...+..+..+|.+.|++++|.++++++. .. .++.+|..+-..+...|+.+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHH
Confidence 99999999999998543 2356789999999999999999999999873 22 467889999888888999999
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
|....+++++. .|.++..+..++.+|...|++++|.+..+.+...
T Consensus 676 ~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 676 GELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999998 5667888999999999999999999999887664
No 16
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=7.7e-28 Score=245.39 Aligned_cols=599 Identities=16% Similarity=0.130 Sum_probs=495.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+..+..|.+.+.|+.-++ ....+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 3577899999999999999999999999999999999999999998888888888777766443 233344444445
Q ss_pred HHHHhCCCCchhhHhh---------------------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 187 RALQVHPSCPGAIRLG---------------------------IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~---------------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
+++...|.+ ..+|+. +=..-..+.+.+.|+..+.++++.-|.+.+.|..++.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 555555544 222222 2223345566777888999999999988888887776
Q ss_pred HHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHh
Q 002286 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (942)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~ 317 (942)
+. .|+.|...+.++-+.-|.++.+|..-+.+-...|+.+...++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 53 2888999999999999999999999999999999999999999988754322 23455778888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 318 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
.|..-.+..+....+...-...+.-..|..-++.+.+.+.++-|...|..+++.+|....+|...+..-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 88888888888877765545667777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 398 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.+++++...|.....|...+..+ ..||...|..++..+.+..|. +.++|..-..+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999999999999999999999 899999999999999987665 578898888899999999999999999987
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
.++ ...+++.-+.+...+++.++|+.+++++++..|
T Consensus 647 ~sg--------------------------------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 ISG--------------------------------------------TERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cCC--------------------------------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 432 667888888899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhh
Q 002286 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (942)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 636 (942)
+....|+.+|.++...++.+.|...|...++.-|..+..|..++.+-.+.|....|...++++.-.+|+ +...++....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988888 4433333332
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
. -+.. |+.+.|.....++|+..|++...|..-..+.-+-++-..+++.+.+ .. .+|.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk----ce-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK----CE-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh----cc-----CCchh
Confidence 2 2223 9999999999999999999988877766666666665444444443 33 68899
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+...|..+....++++|.++|.++++..|+..| ++.++-+.+...|.-++-.+.+.+.....|.+...|-.+.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD--~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD--AWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccch--HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999999999999999999999666655 5555557788899989999999999999999877665443
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=9.7e-29 Score=263.05 Aligned_cols=647 Identities=15% Similarity=0.105 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++++|..++..+++.+|.++.+|+.+|.+|-++|+.+++..++-.+-.++|++...|..++....++|++..|.-+|.++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H-HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----V-EALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~-~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
++.+|.+ ....+..+.+|.++|+...|...|.+++...|.. . ......+..+...++ -+.|++.++.++..
T Consensus 234 I~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 234 IQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALSK 309 (895)
T ss_pred HhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhh
Confidence 9999999 6667889999999999999999999999999931 1 122333555666666 68889999988883
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------c---CCCCCchhH-HHHHHHHHH
Q 002286 264 --YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSH-SYYNLARSY 315 (942)
Q Consensus 264 --~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~----------------------~---~~~~~~~~~-~~~~la~~~ 315 (942)
+-.....+..++.++.....++.+......... . +...+.... ....++.+.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 333446788999999999999998888776654 0 111111122 255566666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEK 394 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~ 394 (942)
...+...+++..+..--.. ...+.+..++.++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++.
T Consensus 390 L~~~e~~e~ll~~l~~~n~--~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNV--WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred ccccchHHHHHHHHHHhcC--ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 6666666666665433221 24566777999999999999999999999999887654 46799999999999999999
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
|+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......+++..|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999 9999999999988755211 111112234677888999999999998665
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
.-...+.......++-.... -.+.. .......+........+...-...++.........
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~------------------k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNK------------------KKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHHHHhcchHH------------------HHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 55555543211111100000 00000 00000123334444455544444444322222111
Q ss_pred HH-----HHhCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC--CChh----HHHHhhhhhccccchHHHHH
Q 002286 550 LI-----LFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPN----ALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 550 ~~-----l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~----~~~~l~~~~~~~g~~~~A~~ 614 (942)
.. .....-. .+....+...+.+.+.+.+|..+...++...- .++. ..+....+-+..+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 11 1111111 23445566778899999999999999887642 2222 33334445577899999999
Q ss_pred HHHHhhccCCC-CchhHHHhhhhH--H-HHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC
Q 002286 615 TFRAASDATDG-KDSYATLSLGNW--N-YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG 689 (942)
Q Consensus 615 ~~~~~~~~~~~-~~~~~~~~l~~~--~-y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g 689 (942)
.++.++....- .+++ ...+.++ . .... ++-.-=..++..++..+|++ +......|..+...+
T Consensus 688 ~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~------------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVY-QLNLWNLDFSYFSKY------------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhcc
Confidence 99998876211 1221 1112221 0 2222 44444555666677788887 555666788889999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh--cC--------HHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 002286 690 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ--GN--------FALAMKMYQNCLRKFYYNTDAQILLYLART 759 (942)
Q Consensus 690 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~--g~--------~~~A~~~~~~al~~~~~~~~~~~~~~l~~~ 759 (942)
.+.-|+..+-++....| ++|-+-+.+|-.+..+ ++ .-+++....+..+.-.....-++.|++|++
T Consensus 755 s~~~Al~~y~ra~~~~p-----d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRa 829 (895)
T KOG2076|consen 755 SFKHALQEYMRAFRQNP-----DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRA 829 (895)
T ss_pred chHHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999998 6677766666554432 22 335555555544442122247899999999
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCC------------hhhHhhHHHHHHHHHH
Q 002286 760 HYEAEQWQDCKKSLLRAIHLAPSN------------YTLRFDAGVAMQKFSA 799 (942)
Q Consensus 760 ~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~ 799 (942)
|...|-..-|..+|++++...|.+ -.+-||+.+||+.-|.
T Consensus 830 yh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 830 YHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 999999999999999999998743 3678899999887776
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.98 E-value=1.8e-28 Score=285.85 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=346.7
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
+.+++. .+..|-++....-...+....|+.++|+..+.++...+|....++..+|.++...|++.+|+..|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 5566777777788888899999999999999999888888888999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
.+ +.++..+|.++...|++++|+..++++++.+|++.. +..+|.++...|+ +.+|+..++++++..|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 677889999999999999999999999999999999 9999999999998 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCchh-
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~a~~~~~~~~~~~~- 343 (942)
++.++...+..+.|+..++++...+.. .+........+.+.... .+++ ++|+..++.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888876641110 00001122223333322 2334 7889999998875444444322
Q ss_pred ---hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHH
Q 002286 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (942)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~ 415 (942)
+.+.....+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 222212344677999999999999998764322 244446899999999999999999999888766 355677
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhc
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 484 (942)
++.++ ..|++++|+..++++....|... .+. ...++..++.++...|++++|+..+++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 99999999999998887654210 011 134667788889999999999999999887
Q ss_pred cccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (942)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (942)
..|.+..++..+|.++...|++++|+..+++++..+|++...++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 567788899999999999999999999999999999999899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 565 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
+|.++...|++++|...++++++..|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999887654
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.98 E-value=7e-26 Score=231.23 Aligned_cols=602 Identities=13% Similarity=0.097 Sum_probs=505.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHH
Q 002286 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (942)
Q Consensus 33 l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~ 112 (942)
-+..|..+..|+.-|..--..|++..|..++.++.+..|.+ + .+++..-+.+. .+.
T Consensus 278 retnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLhp--------~d~ 333 (913)
T KOG0495|consen 278 RETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLHP--------PDV 333 (913)
T ss_pred HhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcCC--------hHH
Confidence 34488899999999999999999999999999998887643 1 11222222221 125
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
|..+.-++++..|.++..|+..+.+-.. ...=..+++++++..|++...|-. .....+.+.|.-++.++.+..
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvecc 406 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECC 406 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhc
Confidence 7788889999999999999987766543 334467899999999998876643 345667777999999999999
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC-----CCC
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-----PYC 267 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 267 (942)
|.+ .+.|.. +.++.-|+.|...+.++-+.-|.+...|+.-+.+....|+ .+.-...+.+.+..- .-+
T Consensus 407 p~s-~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 407 PQS-MDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred cch-HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeec
Confidence 998 665654 4456679999999999999999999999999999999998 665566666655432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
...|..-|..+-..|..-.+..+....+...-...+....|..-+..+...+.++-|...|..+++. .|.....|..
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlr 555 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHH
Confidence 5678888888888888888888888888877777777889999999999999999999999999984 4566667888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
.+..-..-|..++-..++++++...|.....|.+.+..+...|+...|...+..+++.+|++...|+.-..+. ....++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence 8888888899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
.|..+|.++....+ ...+|+.-+.+...+++.++|+.+++++++
T Consensus 636 raR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------ 679 (913)
T KOG0495|consen 636 RARDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK------------------------------ 679 (913)
T ss_pred HHHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH------------------------------
Confidence 99999999877433 368898889999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 586 (942)
..|.....+..+|.++.++++.+.|...|...++..|..+..|+.++.+-...|+.-.|...++++.
T Consensus 680 -------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 680 -------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred -------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 6688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHH
Q 002286 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (942)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (942)
-.+|+++..|.....+-++.|+.+.|.....++++..|++.. .+ ...+ ++.. +. ++- ..+..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rk----Tks~D 808 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRK----TKSID 808 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccc----hHHHH
Confidence 999999999999999999999999999999999999887322 11 1112 2211 00 221 22344
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 667 ~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
+++....|+..+..+|.++....++++|.++|.+++..+| +..++|..+-..+...|.-++-.+.|..+....|.
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 5666678889999999999999999999999999999998 88999999999999999999999999999887554
Q ss_pred CC
Q 002286 747 NT 748 (942)
Q Consensus 747 ~~ 748 (942)
..
T Consensus 884 hG 885 (913)
T KOG0495|consen 884 HG 885 (913)
T ss_pred CC
Confidence 43
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.5e-27 Score=271.57 Aligned_cols=329 Identities=12% Similarity=0.022 Sum_probs=180.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
.+..+...|++.+|...++.++...|+++.++..+|.+....|++++|+..+++++..+|+++.++..+|.++ ..|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
+|+..|++++...|. ++.++..++.++...|++++|+..+.+++.
T Consensus 128 ~Ai~~l~~Al~l~P~-----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~------------------------------ 172 (656)
T PRK15174 128 TVADLAEQAWLAFSG-----NSQIFALHLRTLVLMDKELQAISLARTQAQ------------------------------ 172 (656)
T ss_pred HHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------------------
Confidence 555555555554333 344555555555555555555555555444
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..|..+..+..++ .+...|++++|+..++.++..+|. .......++.++...|++++|+..+.++
T Consensus 173 -------------~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 173 -------------EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred -------------hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2233333333332 244555555555555555555432 2223333445555555555555555555
Q ss_pred HhhcCCChhHHHHhhhhhccccchHH----HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 586 LKVNGKYPNALSMLGDLELKNDDWVK----AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+..+|+++.++..+|.++...|++++ |+..|++++...|+ +..++..+|.+ +... |++++|+
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~-l~~~------------g~~~eA~ 304 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADA-LIRT------------GQNEKAI 304 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHC------------CCHHHHH
Confidence 55555555555555555555555553 55555555555554 44555555555 5555 5566666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
..+++++..+|+++.++..+|.++...|++++|+..|++++...| ..+..+..+|.++...|++++|+..|++++
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-----~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-----VTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665554 344444445566666666666666666666
Q ss_pred hhh
Q 002286 742 RKF 744 (942)
Q Consensus 742 ~~~ 744 (942)
+..
T Consensus 380 ~~~ 382 (656)
T PRK15174 380 QAR 382 (656)
T ss_pred HhC
Confidence 653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.5e-27 Score=269.78 Aligned_cols=340 Identities=11% Similarity=0.023 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++.+|...+..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC-C
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-C 267 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 267 (942)
+..+|++ ..++..+|.++...|++++|+..+.+++...|+++.++..++. +...|+ +++|+..+++++..+|. .
T Consensus 137 l~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 137 WLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFALER 211 (656)
T ss_pred HHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCCcc
Confidence 9999999 7778999999999999999999999999999999988876644 677888 99999999999988763 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCchh
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEFIF 343 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~ 343 (942)
......++.++...|++++|+..+.+++... |..+.+++.+|.++...|++++ |+..|++++. ..|+...
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~ 285 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVR 285 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHH
Confidence 4455666888999999999999999999764 6678999999999999999986 8999999998 5678889
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hc
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~ 422 (942)
++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++..+..++.++ ..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777788888 99
Q ss_pred CCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
|++++|+..|+++++..|... ...+++|+..|.+++.
T Consensus 366 G~~deA~~~l~~al~~~P~~~-----------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL-----------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc-----------------hhhHHHHHHHHHHHHH
Confidence 999999999999999877632 2344556666666665
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=2.4e-27 Score=276.33 Aligned_cols=408 Identities=12% Similarity=0.001 Sum_probs=340.9
Q ss_pred HHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 88 ~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
....+....|+.. +|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 20 d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 20 DWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred HHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344455566655 99999999998889898899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+|.++...|++++|+..+++++...|++ .. +..+|.++...|++++|+..++++++.+|++..++..++.++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~- 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL- 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-
Confidence 9999999999999999999999999999 55 89999999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCch----hHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTK----SHSYYN 310 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~----~~~~~~ 310 (942)
.++|+..++++.. .|.... ....+..... ..+++ ++|+..++.++...+..|.. ..+...
T Consensus 166 --~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 --SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred --hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8899999987765 544311 1222222222 22334 67888888888664344432 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 002286 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIY 386 (942)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~ 386 (942)
....+...|++++|+..|+++++..+..|... ...+|.++...|++++|+..|++++...|.+ ......++.++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 23345678999999999999987422224443 3346999999999999999999999888765 45677788889
Q ss_pred HHcCCHHHHHHHHHHHHHhCcC---------------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEV 450 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 450 (942)
...|++++|+..++++....|. ...++..++.++ ..|++++|+..+++++...|. ++.+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l 395 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGL 395 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHH
Confidence 9999999999999999988763 245678889999 999999999999999987665 5899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHH
Q 002286 451 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530 (942)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (942)
+..+|.++...|++++|+..+++++. ..|++..+++.
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~~ 432 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHHH
Confidence 99999999999999999999999998 67889999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002286 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (942)
Q Consensus 531 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (942)
+|.++...|++++|...++.+++..|+++.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999996543
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-27 Score=231.74 Aligned_cols=427 Identities=16% Similarity=0.147 Sum_probs=309.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.+-.+|.-++..|+|++|+.+|..++...|+.+..+..++-||...|+|++.++...++++++|+. .-+++..+.++-.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 344567777777777777777777777777777777777777777777777777777777777777 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh-cCCHH
Q 002286 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFF-TGQHF 285 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~-~g~~~ 285 (942)
+|++++|+....-..=. +-.+......+-.++-.+ |+.....-++ ..|.-|.+. .++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~-fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSAT-FIASYFGSFHADP- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHH-HHHHHHhhccccc-
Confidence 77777777655432111 112222222222333222 2233333333 112222211 11111100 0000
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCC-CC---------chhhhhcHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQ 352 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~---------~~~~~~~la~~~ 352 (942)
..........++.-..-+.-+...+ .|..|...+.+........ .. .+.++...|..+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000111222222222222333 5777777777665422111 11 155677788899
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
+-.|++-.|...|+.++.++|.+...+..+|.+|...++.++....|.++..++|.++++|+..|.++ ..+++++|+..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhh
Q 002286 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (942)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (942)
|++++.+.|. +.-.+..++.+.+++++++++...|+.+..
T Consensus 417 F~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk----------------------------------- 456 (606)
T KOG0547|consen 417 FQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK----------------------------------- 456 (606)
T ss_pred HHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 9999999877 578889999999999999999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 002286 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNE 584 (942)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 584 (942)
..|..+.++...|.++..+++++.|.+.|..++.+.|. ++..+...|.+.. -.+++..|+.++++
T Consensus 457 --------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 457 --------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred --------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 56788999999999999999999999999999999998 5555666555533 35899999999999
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCC
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 624 (942)
+++++|.+..++..+|.+.+++|+.++|++.|++++.+..
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
No 24
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.96 E-value=4.5e-25 Score=235.77 Aligned_cols=644 Identities=15% Similarity=0.088 Sum_probs=436.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
++-..|+..|-++++++|+...++..+|..|....+...|..+|+++..+||.+..++-..+..+....+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 188 ~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+-+..|.. ....|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|. +..|++.|.++..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence 66666543 123456699999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CC
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP 338 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~ 338 (942)
+..+.+..+.+....|.|.++...+...+..... ....++++..++..+...|-...|..+++++++.+. ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888753221 134467788888888888888888888777764221 00
Q ss_pred -CCchhhhhcHHHHHHH-----------------------cCCh------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 339 -HEFIFPYYGLGQVQLK-----------------------LGDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 339 -~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
-+....|..+|+...- .+.. --+.+++-..++.. .++..|+++|..|++
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHH
Confidence 1111112222211110 0000 11222222222221 124466667666665
Q ss_pred c--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002286 389 L--------GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460 (942)
Q Consensus 389 ~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (942)
. .+...|+.++.+++++..++...|..+|.+-..|++.-|..+|-+.+...|. ....|.++|.++..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-----~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-----CHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-----chhheeccceeEEe
Confidence 1 2334677777777777777777777777665556677777777666655444 45667777777777
Q ss_pred cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 461 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
..+++-|...|..+....|... ...+....-+.+ ......+.......... ........+..-.....
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl-------~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNL-------VQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhh-------HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-cccchhhHHHHHHHHHH
Confidence 7777777777777766544211 000000000000 00111111100000000 01112233333344455
Q ss_pred hcCCHHHHH----------HHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc------CCChhHHHHhh
Q 002286 537 QIHDTVAAS----------VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLG 600 (942)
Q Consensus 537 ~~g~~~~A~----------~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~ 600 (942)
..|++++-+ -..++.+..+|++..++...|.....++.+..|.....+++.+- ..++.+--.+|
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 555555444 34445566889999999999999999999999988888876532 23344777889
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH---HH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL---YA 677 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a 677 (942)
.+++..|+++.|...+...-..... +. .-+.++ .|-. ++++++.+.|++++.+..++. ..
T Consensus 1015 RL~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk------------ndf~~sl~~fe~aLsis~se~d~vvL 1077 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK------------NDFFSSLEFFEQALSISNSESDKVVL 1077 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH------------hHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999777666532211111 11 111222 2233 899999999999998765533 34
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC--CHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--DAQILLY 755 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~ 755 (942)
....+++....+.-+.|...+-++....| ....++..++-++....+-.......++..+. +... .-..-+.
T Consensus 1078 l~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1078 LCKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLL 1151 (1238)
T ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHH
Confidence 55667777788889999999999988876 67788888887777655544433333433322 1111 1112234
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
.-.+|-..|+...-.+.++++++.+|.+|.+|-.+.
T Consensus 1152 ~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1152 KELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 455677789999999999999999999999998887
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-26 Score=226.75 Aligned_cols=440 Identities=18% Similarity=0.127 Sum_probs=324.2
Q ss_pred HHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 87 ~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
...+..+-..|+.- -+.+.|++|+.+|+.++...|+.|.-+-+++-+|...|+|++.++...++++++|+.+.+++
T Consensus 112 ~k~A~~lK~~GN~~----f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~ 187 (606)
T KOG0547|consen 112 LKYAAALKTKGNKF----FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALL 187 (606)
T ss_pred HHHHHHHHhhhhhh----hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHH
Confidence 44566666667655 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHh-
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQ- 243 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~- 243 (942)
.+|..+-..|++.+|+.-..-..-...-....+-..+-..+-. .|..-...-+. ..|.-+.+-+ +......
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF 261 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATF-IASYFGSF 261 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHH-HHHHHhhc
Confidence 9999999999999998776543322211112222222222222 23333333333 2222222211 1111100
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC----------CchhHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYC-AMALNYLANHFFFT---GQHFLVEQLTETALAVTNHG----------PTKSHSYY 309 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~---g~~~~a~~~~~~~~~~~~~~----------~~~~~~~~ 309 (942)
..++ .. .-.++.+ ..+...-+.-.... ..|..+...+.+........ ...+.++.
T Consensus 262 ~~~~----------~~-~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 262 HADP----------KP-LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred cccc----------cc-cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 0000 00 0000000 01111111111111 24555555554443221111 11257788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (942)
..|..++-.|++-.|...|..++. .+|.....|..+|.+|...++.++....|.++..++|.++++|+..|.++.-+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 889999999999999999999998 56666667999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002286 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 390 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
+++++|+..|++++.++|.+..++..++.+. .++.+.++...|+.+...+|. .+++++..|.++..+++++.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-----~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-----CPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHhhHHhHHHHH
Confidence 9999999999999999999999999999988 999999999999999999887 5899999999999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH-HhhcCCHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~ 547 (942)
+.|..++.+.+....+ --++..+...|.+ +.-.+++..|+.+
T Consensus 483 k~YD~ai~LE~~~~~~-------------------------------------~v~~~plV~Ka~l~~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLI-------------------------------------IVNAAPLVHKALLVLQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHhhccccccc-------------------------------------cccchhhhhhhHhhhchhhhHHHHHHH
Confidence 9999999954321110 0023333333333 2234899999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 592 (942)
++++++.+|....++..+|.+..++|+.++|+++|+++..+...-
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999998765443
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=8.1e-23 Score=238.78 Aligned_cols=545 Identities=13% Similarity=0.057 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
...+..+.+..+...+ +...+...-..+.+.|++.+|+.+|+.+...+.-.+ ...+..+...+...|..++|...|..
T Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 353 EENSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555544333 333344444445567788888888877766553221 22233345556677778888777766
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002286 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (942)
Q Consensus 223 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~ 301 (942)
... | +...+..+...+...|+ ++.|...+..+.+.. +.+..++..+...|...|+.+.|..+++.+.... .
T Consensus 432 M~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v 503 (1060)
T PLN03218 432 IRN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--V 503 (1060)
T ss_pred cCC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--C
Confidence 543 3 45666677777777777 778888887777654 3456777888888888888888888888877543 1
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh----CCCcHH
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCE 377 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~ 377 (942)
..+..+|..+...|.+.|++++|+..|..+... ....+...|..+...+.+.|++++|...|..+... .| +..
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 224577888888888888888888888888753 12233566888888888899999999999888753 34 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~ 455 (942)
++..+...|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+.. .+..++..+++.+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~PD~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKPDEVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Confidence 78888888999999999999999988876 45678888888888 89999999999888765 24445678888899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 535 (942)
..+.+.|++++|...|..+...+ . +.+..++..+...|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G-----------------------------------------~-~pd~~tynsLI~ay 694 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQG-----------------------------------------I-KLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C-CCCHHHHHHHHHHH
Confidence 99999999999999999988743 2 23667888999999
Q ss_pred hhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccccchHHH
Q 002286 536 EQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A 612 (942)
.+.|++++|..+|+.+... .| +..+|..+...|.+.|++++|..+|+++.... ..+...+..+...+.+.|+++.|
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999988763 34 45789999999999999999999999987653 33555777777889999999999
Q ss_pred HHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCch
Q 002286 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 692 (942)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 692 (942)
...|..+.+....++..++..+... +. +.+++|....+.++..++.++. ...+..+
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~ 829 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTS 829 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhccccc---------cccchHH
Confidence 9999999988777777666555433 21 4467777776666655443322 2223446
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHccc-HHHHHH
Q 002286 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKK 771 (942)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 771 (942)
.|+.+|+++++..- ..+...+..+-.|+...+....+..+++.... .+..++..++..+...+ |+ .++|..
T Consensus 830 ~Al~lf~eM~~~Gi----~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 830 WALMVYRETISAGT----LPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred HHHHHHHHHHHCCC----CCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 79999999998762 13556666666777788888888777766432 34555566777777665 43 358999
Q ss_pred HHHHHHHh
Q 002286 772 SLLRAIHL 779 (942)
Q Consensus 772 ~~~~al~~ 779 (942)
.++.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 99998886
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=5.8e-24 Score=241.37 Aligned_cols=466 Identities=10% Similarity=-0.024 Sum_probs=307.8
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-GAIRL 201 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~ 201 (942)
..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|++++|+.++++++ +|.+. .....
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~ll 106 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLA 106 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHH
Confidence 3455566666666666666666666666666666666654333355555555566666666666666 33220 22222
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ .++|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 335566666666666666666666666666666655565555555 666666666666666654433 3334444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc------
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------ 355 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~------ 355 (942)
++..+|+..+++++... |.+.+.+..+..++...|-...|.+...+--..+ ...+........+.-.++.
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 55544666666666543 4455555666666666666655555444322111 0011001111111111111
Q ss_pred ---C---ChHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-
Q 002286 356 ---G---DFRSALTNFEKVLEIY---PDN----CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 420 (942)
Q Consensus 356 ---g---~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~- 420 (942)
. -.+.|+..++.++... |.. ..+....-.++...|++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1 2356777777777743 332 2244456667778899999999999887554 33445677788888
Q ss_pred hcCCHhHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchh-hhhccccccchhhhhhhh
Q 002286 421 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 498 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 498 (942)
..+.+++|+.+|..++...+.. ..+.+......+...+...+++++|..++++.....|+ ........
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~---------- 408 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG---------- 408 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC----------
Confidence 9999999999999987654321 11223344567888999999999999999999885552 11111111
Q ss_pred hHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
...+|+.......++.++...|++.+|.+.+++++...|.+...+..+|.++...|.+..|
T Consensus 409 -------------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 409 -------------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 1156777888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCc
Q 002286 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (942)
Q Consensus 579 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 627 (942)
...++.+..++|++..+...++.++...|+|.+|......++...|++.
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999999999999999999999999999999843
No 28
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.5e-22 Score=236.49 Aligned_cols=543 Identities=11% Similarity=0.008 Sum_probs=319.0
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+...++....-. .+...+...-..+.+.|++++|+.+|+.+...+. .+...+..+...+...|...+|..++..+..
T Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 444444444332 2334444444555667777777777777665442 2333333444555666777777776665543
Q ss_pred hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC-CCH
Q 002286 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCA 268 (942)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~ 268 (942)
|+ ...+..+..++...|+++.|...|..+.+.... +...+..+...+.+.|+ +++|...|.++..... .+.
T Consensus 435 --pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 --PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred --CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCH
Confidence 33 345566666667777777777777776665432 45566666677777776 7777777777665542 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCCchhhhhc
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYG 347 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 347 (942)
.++..+...|...|++++|..+|..+.... . ..+..+|..+...|...|++++|..+|..+... .+..| ....+..
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN-V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 677777777777777777777777765432 1 123456777777777777777777777777542 11122 2345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH-hcC
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGELL-ISS 423 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~-~~~ 423 (942)
+...|.+.|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|..+|..+... .| +...+..+...+ ..|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC
Confidence 6777777777777777777776654 345667777777777777777777777777654 34 355666666666 777
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
++++|..++..+.+ .+...+..+++.+...|.+.|++++|...|+++...+
T Consensus 664 ~~eeA~~l~~eM~k----~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------- 714 (1060)
T PLN03218 664 DLDKAFEILQDARK----QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------- 714 (1060)
T ss_pred CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 77777777776654 2444456677777777777777777777777765532
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..| +..++..+...|.+.|++++|.+++.++.... ..+..+|..+...+...|++++|..++
T Consensus 715 ----------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 715 ----------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred ----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223 45567777777777777777777777766532 223456666666777777777777777
Q ss_pred HHHHhhcC-CChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 583 NEALKVNG-KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 583 ~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
..+.+... .+..++..+..++. +.+++|....+..+... .++. .... +..+.|+
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~Al 832 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWAL 832 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHHH
Confidence 77766542 12223333322211 23444444433333221 1111 1112 4445677
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 662 ELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 662 ~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
.+|++++... ..+...+..+-.++...+....+...+..+.... .+.+...|..+-+.+.. ...+|..+|+.+
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~----~~~~~~~y~~Li~g~~~--~~~~A~~l~~em 906 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA----DSQKQSNLSTLVDGFGE--YDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC----CCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence 7777777654 1133344444445555555555555554433221 12445555556555522 134677777777
Q ss_pred Hhhh
Q 002286 741 LRKF 744 (942)
Q Consensus 741 l~~~ 744 (942)
....
T Consensus 907 ~~~G 910 (1060)
T PLN03218 907 ASLG 910 (1060)
T ss_pred HHcC
Confidence 6644
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.4e-25 Score=214.04 Aligned_cols=455 Identities=19% Similarity=0.176 Sum_probs=358.8
Q ss_pred HHHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHH
Q 002286 108 EHFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSD 180 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~ 180 (942)
+.+.+|+..|+-+++. .|+.....+.+|.+++++.+|.+|+++|+.++..-|.- ...+...|..+.+.|.|+.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3455899999887764 47777888899999999999999999999999988852 4567788889999999999
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCCHHHHHHHHHHHHhh--
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------------DPENVEALVALAVMDLQA-- 244 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~l~~~~~~~-- 244 (942)
|+..|..+.+..|+. . .-+.+..|++..|+-++-.+.|.+.+.+ +|++......+-.-.++.
T Consensus 295 ainsfdh~m~~~pn~-~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNF-I-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhCccH-H-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 999999999999998 3 3467889999999999999999999875 222211111111111111
Q ss_pred -ccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCH
Q 002286 245 -NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 245 -~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (942)
.+....++++-.--+.+. +.|+....+- ++-..++.....+...+.-...+..+...|++
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~d-----------------wcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCD-----------------WCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccH-----------------HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 111112333333222221 1233222111 11122222222233345566778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc--CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+.|++.+.-..+. ++.....+-.+|..+++.+ .++..|..+...++.++.-++.++.+.|.+-+..|++++|.+.|
T Consensus 436 ~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999998766542 2233334455666666664 47889999999999999999999999999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
+.++..+.....+++++|..+ .+|+.++|+.+|-+...++.. +.+++..++.+|..+.+..+|++++.++..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s-- 586 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS-- 586 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--
Confidence 999999988999999999999 999999999999999888776 589999999999999999999999999887
Q ss_pred hhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
.-|.++.++..+|.+|-+.|+-..|.+++-....-.|.+
T Consensus 587 -----------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 587 -----------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
.+..-.|+..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|...|+..-...|. +...+-
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclk 698 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLK 698 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHH
Confidence 9999999999999999999999999999999998888888999999999999999999999888887 544433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=7.8e-24 Score=240.31 Aligned_cols=441 Identities=12% Similarity=-0.009 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
+|++..|+..|.++++.+|.++.+...++.++...|+.++|+..+++++...|.....+..+|.++...|+|++|+.+|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455999999999999999975555888999999999999999999994444555666666889999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
++++.+|++ +.++..++..+...++.++|+..++++...+|.+... ..++.++...++ ..+|+..++++++.+|+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCC
Confidence 999999999 7778899999999999999999999999999986554 555555554555 66699999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh---------cC---CHHHHHHHHHHHHHh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS---------KG---DYEKAGLYYMASVKE 334 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g---~~~~A~~~~~~a~~~ 334 (942)
+..++..+...+...|-...|.++...--..... ......-...+.-..+ .+ -.+.|+.-++..+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887763322111 0101111111111111 11 235566667776664
Q ss_pred cCCCCCc----hhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--
Q 002286 335 INKPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-- 407 (942)
Q Consensus 335 ~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-- 407 (942)
.+..|.. ..+....-.++...|++.+++..|+.+.... |--.-+....|..|...+++++|..+|..++...|
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 4443432 3344556677889999999999999987654 22345788899999999999999999999987653
Q ss_pred ----CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 408 ----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK----------AGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 472 (942)
Q Consensus 408 ----~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (942)
.+......|...+ ..+++++|..++++.....|. ...+.-.+....++.++...|++.+|...++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2344456677777 999999999999999875441 0111223677778999999999999999999
Q ss_pred HHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002286 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (942)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (942)
+.+. ..|.+..+...+|.++...|.+..|...++.+.
T Consensus 441 ~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 441 DLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 9988 678899999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
..+|++..+...++.++...+++.+|......++...|+++.+.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999999999999999999999999998654
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.2e-25 Score=215.10 Aligned_cols=480 Identities=18% Similarity=0.174 Sum_probs=261.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhhHhh
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~ 202 (942)
.+++.++..|.....+.+|+..|+-+++. .|+....-+.+|.++++..+|.+|+++|+-++..-|... ..+...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988854 677777778899999999999999999999999888753 334567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC--CC---------CH-HH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--PY---------CA-MA 270 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~---------~~-~~ 270 (942)
+|..+.+.|.|+.|+..|+.+++..|+.. +-+.|..+++..|+ .++-.+.|.+.+.+. |+ +| ..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88999999999999999999999999744 45567778888888 666666777777542 11 11 01
Q ss_pred HHHHH---HHH--HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 002286 271 LNYLA---NHF--FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (942)
Q Consensus 271 ~~~la---~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 345 (942)
+..-+ ..+ ....+-..|++..-.+.+... |. -.-+|.....++-..++.....+-....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pv-------------i~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PV-------------IAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cc-------------cccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11000 000 001111112222221111100 00 00011111111111121111111112223
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 421 (942)
...+..+.+.|+++.|++.+.-.-+.+.... .+-.+|..+++.+ .++..|..+...++.++.-++.+..+.|.+. .
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3444555566666666655544433332211 1223333333332 2455555555555555555555555555555 5
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.|++++|.+.|+.++..... ..++++++|..+..+|+.++|+.+|-+.-..
T Consensus 503 ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i------------------------ 553 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI------------------------ 553 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------
Confidence 55555555555555542211 2355555555555555555555555554331
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
--++..+++.++.+|..+.+...|+++|.++...-|+++..+..|+.+|-+.|+-.+|..+
T Consensus 554 -------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 554 -------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred -------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 1124455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+-......|.+.++.-.+|..|....-+++|+.+|+++.-..|....+ .+..+.+ +... |+|.+|.
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw-qlmiasc-~rrs------------gnyqka~ 680 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-QLMIASC-FRRS------------GNYQKAF 680 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-HHHHHHH-HHhc------------ccHHHHH
Confidence 555555555555555555555555555555555555554444432211 1122222 3333 5555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g 689 (942)
..|+..-+..|.+...+-.|..+....|
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 5555555555555555554444444333
No 32
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.95 E-value=6.3e-23 Score=219.56 Aligned_cols=599 Identities=15% Similarity=0.082 Sum_probs=393.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.|..+|..|+..++...|+..|+.+++.+|.+..+|.++|.+|...|.|..|++.|.++..++|.+ ....+..+.....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHH
Confidence 445566666667777777777777777778778888888888888888888888888887777777 5666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-------cc----HHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 002286 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-------NE----AAGIRKGMEKMQRAFEIY-PYCAMALNYLANH 277 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------~~----~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 277 (942)
+|.+.+|+..+...+........+...++.++++. |- .+-++++++.|.-++... .++...|..++..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 78888888777777766555444455555444432 21 011334444444333333 3333344444332
Q ss_pred HHhcCCHH--H---------------------------HHHHHHHHHhcCCCCCchhHHHHHHHHHHHh--------cCC
Q 002286 278 FFFTGQHF--L---------------------------VEQLTETALAVTNHGPTKSHSYYNLARSYHS--------KGD 320 (942)
Q Consensus 278 ~~~~g~~~--~---------------------------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~ 320 (942)
....-..+ . +.+.+-..++. ...+..|+++|..|+. +.+
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl----~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL----AIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH----hhccchHHHHhHHHHHHHHHcCCcchh
Confidence 22111110 1 11111111111 1124668888887776 223
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
-..|+.++.++++ ...++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++.|...|.
T Consensus 799 ~~~Ai~c~KkaV~---L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVS---LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHHHHHHHHH---HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 3578888888887 445666678888877 666889999999999999999999999999999999999999999999
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
++..++|.+...|...+.+. ..|+.-++...+..........+.......+..-...+..+|++++-+..-+++.....
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 99999999999999998888 88988888888887666655555555566777777778888888877776666544211
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-----
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----- 554 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 554 (942)
-.+ ......|+...++...|.....++.+..|.+.+.+++..
T Consensus 955 al~---------------------------------~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~ 1001 (1238)
T KOG1127|consen 955 ALS---------------------------------YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL 1001 (1238)
T ss_pred HHH---------------------------------HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001156888899999999999999999999998887642
Q ss_pred -CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-HHHHhhhhhccccchHHHHHHHHHhhccCCCC-chhHH
Q 002286 555 -YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYAT 631 (942)
Q Consensus 555 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 631 (942)
...+..+--..|.+++..|+++.|...+... |.... -........+-.|++.++.+.|++++.+..+. +...+
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvL 1077 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVL 1077 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhh
Confidence 1233346777889999999999776554332 11111 00111112256789999999999999976553 33333
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (942)
+.-+.+..... +.-+.|....-+++...|.+......++.++.-..+-.....+.++....-. +..
T Consensus 1078 l~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k-~e~- 1143 (1238)
T KOG1127|consen 1078 LCKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLK-LEW- 1143 (1238)
T ss_pred hHHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhh-hHH-
Confidence 33332211222 6678888999999999999999988888887766555444444444433221 000
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH-cc-------------cHHHHHHHHHHHH
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AE-------------QWQDCKKSLLRAI 777 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~-~g-------------~~~~A~~~~~~al 777 (942)
..-..-+..-.+|..+|+-..-.+.+++++-.+| .++.++..|..-|.. .+ .+..-++..+++.
T Consensus 1144 ~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P--~~~~~WslL~vrya~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~ 1221 (1238)
T KOG1127|consen 1144 FCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNP--GDPALWSLLSVRYAQRNAKNGVVANHGKKAYLYTAVLKTIQKAA 1221 (1238)
T ss_pred hccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHhccCCeehhHHHHHHHHHHHHHHHHHHH
Confidence 1112223445677888999888999999988754 555565555532221 11 1223456678889
Q ss_pred HhCCCChhhHhhH
Q 002286 778 HLAPSNYTLRFDA 790 (942)
Q Consensus 778 ~~~p~~~~~~~~l 790 (942)
.+.|-||.+|-.+
T Consensus 1222 ~L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1222 LLSPWDPAIWKAL 1234 (1238)
T ss_pred hcCCCCHHHHHHH
Confidence 9999999887554
No 33
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.95 E-value=6.5e-23 Score=210.76 Aligned_cols=561 Identities=15% Similarity=0.120 Sum_probs=392.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHH
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 349 (942)
.++..+.-.+..++|.+.+++.+.+++. .|..+++....|..+...|+-++|..+...++. .++.+..+|..+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHH
Confidence 3444445556778888888888888874 477779999999999999999999999999998 7788889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHH
Q 002286 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 428 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 428 (942)
.++....+|++|+++|..++.+.|+|..++..++.+..++++++.....-.+.++..|..-..|+.++... ..|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 429 LDAFKTARTLLKKAGEE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 429 ~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
...++...+........ ...+........+...|.+++|++.+..--..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------- 214 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------- 214 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----------------------------
Confidence 99999888765421111 11245556677788889988888888765331
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH-HHHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNE 584 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~ 584 (942)
--+........+.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|..
T Consensus 215 ---------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 215 ---------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred ---------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11244455567899999999999999999999999999888888877776333444444 55555
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHH-HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHH
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVK-AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (942)
.-+..|...... .++.....-.+... --.++...++.+-.+-. ..+-.+ |-.. +. ..-.++-+..
T Consensus 280 ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SL-yk~p--------~k-~~~le~Lvt~ 345 (700)
T KOG1156|consen 280 LSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSL-YKDP--------EK-VAFLEKLVTS 345 (700)
T ss_pred HhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHH-Hhch--------hH-hHHHHHHHHH
Confidence 555444443322 22222222223322 22334444444321111 111111 1110 00 0111122222
Q ss_pred HHHHHhcC------------CC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC
Q 002286 664 YTRVIVQH------------TS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729 (942)
Q Consensus 664 ~~~~l~~~------------p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~ 729 (942)
|...+.-. |. -.|.++.++.-+-..|+++.|..+++.+++..| ..++.+..-|+++...|+
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-----TliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-----TLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHHhcCC
Confidence 22222211 22 245667888889999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHh--hhhhcCC
Q 002286 730 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS--TLQKTRR 807 (942)
Q Consensus 730 ~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~l~~~~~ 807 (942)
+++|..++..+.+. +.+|..+....|.-..+.++.++|.+++.+- ..+..+..-..+-..|++++.+. ++.+.
T Consensus 421 l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skF-Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~-- 495 (700)
T KOG1156|consen 421 LDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKF-TREGFGAVNNLAEMQCMWFQLEDGEAYLRQ-- 495 (700)
T ss_pred hHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHh-hhcccchhhhHHHhhhHHHhHhhhHHHHHH--
Confidence 99999999999998 7777777778999999999999999988774 33433555555556667777652 22222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHH--H--HHHHHHHHHHHHHHH----------------
Q 002286 808 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEY--C--KHLLDAAKIHREAAE---------------- 867 (942)
Q Consensus 808 ~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~---------------- 867 (942)
..+..|...+....++|...+.+... +|.++.++.+.+... . .+.+......+++++
T Consensus 496 --~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~ 572 (700)
T KOG1156|consen 496 --NKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMY 572 (700)
T ss_pred --HHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccc
Confidence 34677888888888889888887644 455555544443321 1 233333333333333
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002286 868 -----------REEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKL 906 (942)
Q Consensus 868 -----------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (942)
++++++++++..++++++.|+++.+++.+.+..-+..++
T Consensus 573 ~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~ 622 (700)
T KOG1156|consen 573 TNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKP 622 (700)
T ss_pred cccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 345566666666666666655555555554444443333
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-23 Score=212.34 Aligned_cols=506 Identities=14% Similarity=0.119 Sum_probs=346.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+-+-...+.+|..|+-+-+++..+. .+|.+ -+.+|.|++-.|++..|......- .++..+..+.+..+.++....+
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d-~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~- 97 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT-NDPAD-IYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE- 97 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc-CChHH-HHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH-
Confidence 3334455666777777777766665 33233 345677777777777766655543 3444555566666666666655
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
+++|+..+.+. ... .++..+. +.. + +......+..
T Consensus 98 --~~~al~vl~~~-~~~-~~~f~yy-----------------------------~~~--~----~~~l~~n~~~------ 132 (611)
T KOG1173|consen 98 --WDQALLVLGRG-HVE-TNPFSYY-----------------------------EKD--A----ANTLELNSAG------ 132 (611)
T ss_pred --HHHHHHHhccc-chh-hcchhhc-----------------------------chh--h----hceeccCccc------
Confidence 66665555433 000 0000000 000 0 0000000000
Q ss_pred HHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-----H
Q 002286 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK-----A 402 (942)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~ 402 (942)
. ...........+..|.+|....+.++|...|.+++..++.+.+++..+.....-..+ +-...+.. .
T Consensus 133 -----~-~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 133 -----E-DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDLAML 204 (611)
T ss_pred -----c-cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccHHhh
Confidence 0 001112233466678888888888888888888888888877776665544433321 11111111 0
Q ss_pred HHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhh
Q 002286 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (942)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 482 (942)
...+......++.+-..- ..-+.+...-.. ..-.+...++.++...+..++..+++.+..+.++..+..
T Consensus 205 ~~ed~e~l~~lyel~~~k--~~n~~~~~r~~~----~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----- 273 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCK--NRNEESLTRNED----ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----- 273 (611)
T ss_pred hhhHHHHHHHHHHhhhhh--hccccccccCch----hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----
Confidence 011111111111111000 000000000000 000111235678888899999999999999999999984
Q ss_pred hccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchh-HHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH
Q 002286 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (942)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (942)
+|-... .-..+| ++...|+..+-..+-.+++..+|+.+-.
T Consensus 274 --------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 274 --------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred --------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence 343444 444555 8888899888888888999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHH
Q 002286 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (942)
Q Consensus 562 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~ 641 (942)
|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...|+.++|+..|..+.+..++... ..+.+|.- |..
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme-y~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME-YMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877332 23346666 888
Q ss_pred HHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--CCchhHHHH
Q 002286 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF--VQMPDVWIN 719 (942)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~ 719 (942)
+ +++.-|..+|.+++.+.|.++...+.+|.+....+.+.+|..+|+.++..-+.... +.....+.|
T Consensus 393 t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 393 T------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred h------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 8 99999999999999999999999999999999999999999999999854432111 123456899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
|||++.+++.+.+||..|++++.. .+.++.++..+|.+|...|+.+.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999 677889999999999999999999999999999999997777666665444
No 35
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=1e-23 Score=245.88 Aligned_cols=428 Identities=11% Similarity=0.008 Sum_probs=293.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHH
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 349 (942)
++..+...+...++++.+..++..+.... ..| +..++..+...|...|+++.|...|..+.. .+..+|..+.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li 196 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE------RNLASWGTII 196 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHH
Confidence 33334444444444444444444443322 112 234455555555566666666665555431 1233455566
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHh
Q 002286 350 QVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~ 426 (942)
..|.+.|++++|+..|+++....+ .+..++..+...+...|....+..++..+.+.. ..+..++..+...| ..|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 666666666666666666655432 133455555555666666666666666555543 23455566666666 667777
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
+|...|+.+.. .+..+|+.+...|.+.|++++|+..|.++...+
T Consensus 277 ~A~~vf~~m~~--------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------------------- 320 (697)
T PLN03081 277 DARCVFDGMPE--------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------------------- 320 (697)
T ss_pred HHHHHHHhCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------
Confidence 77666655421 245677777788888888888888888776532
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..| +..++..+..++...|++++|.+++..+++.. +.+..++..+...|.+.|++++|...|+++
T Consensus 321 -------------~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 321 -------------VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred -------------CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 223 45567777888888888888888888887765 455677888888888888888888888876
Q ss_pred HhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
.. .+..+|..+...|.+.|+.++|+..|+++...+..++..++..+... +... |..++|.++|+
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~~~~a~~~f~ 450 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYS------------GLSEQGWEIFQ 450 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcC------------CcHHHHHHHHH
Confidence 53 35678888888888899999999999988887777778887777777 7777 88999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 666 RVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 666 ~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.+.+..+ .+...+..+..+|.+.|++++|.++++++ |. ..+..+|..+...+...|+++.|...+++++..
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~---~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 8876432 35567888889999999999999888764 21 145677888999999999999999999998877
Q ss_pred hCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+.+...+..++.+|.+.|++++|.+.++.+....
T Consensus 524 --~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 524 --GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred --CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 34456678888999999999999999998877653
No 36
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=2.4e-23 Score=242.78 Aligned_cols=463 Identities=12% Similarity=0.011 Sum_probs=314.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
..|......+...|++++|+..|+.+....| .+...+..+...+...++++.|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677777778888888888888888776442 35566777777777888888888888877775533335667777788
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
|.+.|+++.|...|+++.+ | +...|..+...+...|+ +++|+..|.++....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~-------------------- 221 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGSD-------------------- 221 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCC--------------------
Confidence 8888888888888877642 2 34556666666666666 66666666666544321
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
.+..++..+...+...|....+..++..+.+.. -.....++..+...|.+.|++++|...|+
T Consensus 222 ----------------p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 222 ----------------AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred ----------------CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 112334444455555666666666655555421 12233455666677777777777777776
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
.+. +.+..+|..+...|.+.|+.++|+.+|.++.... ..+...+..+...+ ..|+++.|...+..+.+. +.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~ 356 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GF 356 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CC
Confidence 552 3456677777777777777777777777766532 22445566666666 777777777766666543 33
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
..+..+++.+...|.+.|++++|...|+++.. | +
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------------------------------------------~-d 390 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------------------------------------------K-N 390 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------------------------C-C
Confidence 34556677777777777888888777776543 1 4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC--ChhHHHHhh
Q 002286 525 VTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLG 600 (942)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~ 600 (942)
..+|..+...|.+.|+.++|.++|+++... .|+ ..++..+...+...|..++|..+|+.+.+..+- +...|..+.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 456777777777888888888888877663 233 456777777777788888888888887764432 334677777
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++.+.|+.++|.+.++++ ...++..++..+... +... |+++.|...+++++...|+++..+..
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 8888888888888877754 223355666667666 6666 88888888888888888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 681 AGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
++.+|...|++++|.++++.+.+..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 8888888888888888888887765
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-23 Score=212.58 Aligned_cols=447 Identities=17% Similarity=0.158 Sum_probs=366.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
+..|.-|+-+-+++..+. ++|.-.+.+|.+++..|.+.+|......- ..+..+..+.+..+.++...+++++|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888999999999999999998887765 5666788899999999999999999999988
Q ss_pred HH------HHhCCCC------------------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 187 ~~------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
+. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.++...+-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32 1111211 12345668889999999999999999999999999888776654443
Q ss_pred hhccHH-----------hHHHHHHHHHHHHHh-------------C--------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 243 QANEAA-----------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 243 ~~~~~~-----------~~~~A~~~~~~~~~~-------------~--------p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
...... ...+-.+.++..+++ + .+++.+....+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 332100 011111111111111 1 24667888889999999999999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
++..+...+ -....+.....++...|+..+-..+-.+.++ ..|..+..|+..|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 999998653 3334443333388888988777776677776 7788889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHH
Q 002286 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (942)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (942)
++|....+|...|.++...|..++|+..|..+.++-|......+.+|.-| ..+++.-|..+|.++..+.|. +|-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999988889999999 899999999999999999887 689
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
+++.+|.+.+..+.+.+|..+|+.++..-+ +. ....+....++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~~----------------------------------~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--SV----------------------------------LNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--hc----------------------------------cccccchhHHHH
Confidence 999999999999999999999999984211 00 001123556789
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
++|.++.+++.+++|+..|++++...|.++.++..+|.++...|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777777654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.8e-22 Score=194.48 Aligned_cols=449 Identities=16% Similarity=0.169 Sum_probs=354.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh------hhhhHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK------QREKEEHFILAT 114 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~------~~~~~~~~~~A~ 114 (942)
...+++|..|+....++.|.-.|+..-+.. .. .+...+.....--+.... ...+.......+
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l 146 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSEL 146 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHH
Confidence 357889999999999999999998765431 11 111111111110000000 001111222344
Q ss_pred HHHHHHhhc----CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 115 QYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 115 ~~~~~a~~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
..+++-++. ...|+..++..|.++-..|..+.|+..|..++...|-+-.+|..++.+... +........
T Consensus 147 ~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~ 219 (559)
T KOG1155|consen 147 IELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV 219 (559)
T ss_pred HHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh
Confidence 444443332 234678889999999999999999999999999999999999999876432 333344443
Q ss_pred hCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 191 VHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 191 ~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|.+ ....-+.++.++..+...++++.-++..... .|.+.-.-...|.+.....| +++|+..|+...+.+|...
T Consensus 220 ~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 220 GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcc
Confidence 34432 1333456888888899999999999998888 78888888888888888888 9999999999999999998
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.-.-...++++-..+-.+..-+...+.... .-.++++..+|..|...++.++|+.+|+++++ .+|....+|..+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~id---KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLm 370 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNID---KYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLM 370 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHhc---cCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHh
Confidence 888888888888888777666666666543 45568899999999999999999999999998 789999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (942)
|.-|..+++...|+..|+.+++++|.+..+|+.+|..|.-++...=|+-+|+++....|+++..|..+|.+| ..++.++
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhh
Q 002286 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (942)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (942)
|+++|.+++..... ...++..+|.+|-+.++..+|..+|++.+..... .
T Consensus 451 AiKCykrai~~~dt-----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~----e---------------------- 499 (559)
T KOG1155|consen 451 AIKCYKRAILLGDT-----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL----E---------------------- 499 (559)
T ss_pred HHHHHHHHHhcccc-----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----h----------------------
Confidence 99999999986433 4689999999999999999999999999873210 0
Q ss_pred hhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
....|....+...++..+.+.+++++|..+...++.-++.-
T Consensus 500 ----------g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 500 ----------GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred ----------cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 01344566677779999999999999998888877664443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-22 Score=196.43 Aligned_cols=424 Identities=16% Similarity=0.088 Sum_probs=326.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----------------Ch---HHHHHHHHHHHHh
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----------------RY---SDSLEFYKRALQV 191 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----------------~~---~~A~~~~~~~l~~ 191 (942)
.+.+|..++....++.|.-.++.... ....+..-.+.+-.| .+ ...+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 45677888888888888777766543 111111111111111 11 1122222222222
Q ss_pred ---CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC--C
Q 002286 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--Y 266 (942)
Q Consensus 192 ---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~ 266 (942)
.-+..+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+..... ........-| .
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~~ 225 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSDM 225 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCcccc
Confidence 122236677889999999999999999999999999999999999987654332 2222222233 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 346 (942)
+...-..+..++....+.+++..-.+.....+ .|.....-...|.+.+...++++|+..|+...+ .+|-...-.-
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmd 300 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMD 300 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHH
Confidence 45556667777777777777777777766542 355566777888899999999999999999998 4565555555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (942)
....+++-.++-.+-.-.-..+..++.-.+++...+|..|.-.++.++|+.+|+++++++|....+|..+|.-| +..+.
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 55666666666555555666777788888889999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
..|+..|++|+++.|. +-.+|+.+|..|.-++.+.=|+-+|++|..
T Consensus 381 ~AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~----------------------------- 426 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE----------------------------- 426 (559)
T ss_pred HHHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh-----------------------------
Confidence 9999999999998877 578999999999999999999999999988
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..|.+..+|..+|.+|.+.++.++|+++|..++........++.++|.++.+.++..+|..+|.+.
T Consensus 427 --------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 427 --------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred --------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 778899999999999999999999999999999988888899999999999999999999999998
Q ss_pred Hhh-------cCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 586 LKV-------NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 586 l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
++. .|....+...|+..+.+.+++++|-.+...++.-
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 884 3555567778999999999999998887776654
No 40
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-20 Score=194.25 Aligned_cols=452 Identities=15% Similarity=0.152 Sum_probs=294.7
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++..+.-.+..++|...+...+.+++..|.+++.+..+|..+...|+-++|......++..++.+ ...|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHHh
Confidence 3556666666777777777888888877777777777777777777888888888887777777777 666777787777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~ 288 (942)
...+|++|+.+|+.|+..+|+|...|.-++.+..+.++ ++.....-.+.++..|.....|..++..+...|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888777777777777 777777777777777777777777777788888888777
Q ss_pred HHHHHHHhcCCCCCc-----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHH
Q 002286 289 QLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (942)
...+...+.....|. ..++......+....|.+++|.+.+..-.. ..-+........+.++.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777777655432222 245666677788889999999888876543 222333445668899999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHc
Q 002286 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
.+..++..+|++...+..+-.++....+--+++ ..|...-+..|.. .....++.....| ++-...+.+.+...-..
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~--eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNG--EELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCc--chhHHHHHHHHHHHhhc
Confidence 999999999999998888888876443444444 4555444444432 2233333333111 22222233333222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCC
Q 002286 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522 (942)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (942)
|. +.+...+-.+|-.... . ..+++.+.... ..+++.. .+.- .+. ...+.+.
T Consensus 318 g~---p~vf~dl~SLyk~p~k---~-~~le~Lvt~y~--~~L~~~~------------------~f~~-~D~-~~~E~Pt 368 (700)
T KOG1156|consen 318 GV---PSVFKDLRSLYKDPEK---V-AFLEKLVTSYQ--HSLSGTG------------------MFNF-LDD-GKQEPPT 368 (700)
T ss_pred CC---CchhhhhHHHHhchhH---h-HHHHHHHHHHH--hhccccc------------------CCCc-ccc-cccCCch
Confidence 11 2223333333222111 1 12332222100 0000000 0000 000 0011222
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
...+.++.++.-+...|+++.|..+.+.++...|..++.+...|.++...|++++|..++..+.+++-.+..+-..-|..
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKY 448 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 34556677788888889999999999999988888888888888999889999999888888888876666555566666
Q ss_pred hccccchHHHHHHHHHh
Q 002286 603 ELKNDDWVKAKETFRAA 619 (942)
Q Consensus 603 ~~~~g~~~~A~~~~~~~ 619 (942)
.++.++.++|.+.....
T Consensus 449 mLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHccccHHHHHHHHHh
Confidence 66666666666655543
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.6e-24 Score=218.99 Aligned_cols=312 Identities=21% Similarity=0.248 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
..+.++..+|..|..+.. -+..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~---------y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQ---------YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666666665543 34569999999976667777788888999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
.....-....++....+--+---+.+..+..+|+. +..|..+|.||.-+++++.|+.+|+++++++|+..-++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 76666556666666666555555667778888988 77799999999999999999999999999999999999999988
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 320 (942)
+....+ +++|+..|+.++..+|.+-.+|+.+|.+|.++++++.|+-.|++++... |.+......+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhh
Confidence 888877 9999999999999999999888888888888888888888888888654 7777788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++++.+.-|++..++..+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888886 5677777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCcCcHH
Q 002286 401 KAAKIDPRDAQ 411 (942)
Q Consensus 401 ~~l~~~p~~~~ 411 (942)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88888876544
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-22 Score=205.06 Aligned_cols=438 Identities=17% Similarity=0.165 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.|+|+.|+.+|..++.++|.+...+.++..+|...|+|++|+..-.+.+++.|+.+..|..+|..++-.|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+.|+.+|++ ..+..+++.++. -++ +. ...+ ..+..|..+...-....- -.+.+.......+..+|.
T Consensus 95 ~GL~~d~~n-~~L~~gl~~a~~--~~~--~~---~~~~----~~p~~~~~l~~~p~t~~~--~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 95 EGLEKDPSN-KQLKTGLAQAYL--EDY--AA---DQLF----TKPYFHEKLANLPLTNYS--LSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHhhcCCch-HHHHHhHHHhhh--HHH--Hh---hhhc----cCcHHHHHhhcChhhhhh--hccHHHHHHHHHhhcCcH
Confidence 777777777 555666665551 111 00 0000 112222222211111100 022222333333333443
Q ss_pred CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCC------------c---------hhHHHHHHHHHHHhcCCH
Q 002286 267 CAMALNYLANHFFFT----GQHFLVEQLTETALAVTNHGP------------T---------KSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 267 ~~~~~~~la~~~~~~----g~~~~a~~~~~~~~~~~~~~~------------~---------~~~~~~~la~~~~~~g~~ 321 (942)
+...+..--.+.-.. |........-..........| + ...-.-.+|...+...++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 322211100000000 000000000000000000001 0 123356688888888999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEK 394 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~ 394 (942)
..|++.|..++.. . ....-+...+-+|+..|.+.+.+..+..+++..... ..++..+|..|.+.++++.
T Consensus 241 ~~a~q~y~~a~el---~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 241 ETAIQHYAKALEL---A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHhH---h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 9999999998863 3 445557778888999999988888888877754432 2344456667777888899
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
|+.+|.+++..... ..++ .....++++...+...-+.|.. ..-...-|..++..|+|..|+.+|.+
T Consensus 317 ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999887765433 2333 4444555555544443333331 33444559999999999999999999
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
++. .+|+++..+.|.|.+|..+|.+..|+...+.+++
T Consensus 384 AIk-------------------------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 384 AIK-------------------------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHh-------------------------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 998 5688999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 554 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
.+|+...+|++.|.++....+|+.|++.|.++++.+|++.++...+..+...........+..++
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999888888887654333333444444
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-19 Score=189.65 Aligned_cols=414 Identities=20% Similarity=0.177 Sum_probs=295.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (942)
..++.-..+.++++-..-..+.... .-......+-.+.......|+++.+.+.|++++...-...+.|+.++.+|...
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA 370 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh
Confidence 3444455556666555444433211 11234455667888889999999999999999988878889999999999999
Q ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---
Q 002286 390 GQIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG--- 462 (942)
Q Consensus 390 g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 462 (942)
|....|+..++..+... |+++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 99999999999999988 88888888888877 889999999999999997655555556788888888876442
Q ss_pred --------CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 463 --------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 463 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
...++++.+++++. .+|.++.+.+.++.-
T Consensus 451 ~~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQ 487 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHH
Confidence 24567777777776 678899999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 613 (942)
|...++.+.|....++++..++ +++.+|..++.++...+++.+|+.+.+.++...|+|.........+-...++.++|+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 9999999999999999999955 568999999999999999999999999999999987665555555555556666655
Q ss_pred HHHHHhhccCC-------------------------C--Cchh-------------------------------------
Q 002286 614 ETFRAASDATD-------------------------G--KDSY------------------------------------- 629 (942)
Q Consensus 614 ~~~~~~~~~~~-------------------------~--~~~~------------------------------------- 629 (942)
......+..-. + .+..
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 55444332111 0 0000
Q ss_pred ----HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 630 ----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 630 ----~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
.+...+.. +... ++.++|..++.++-..+|-.++.++..|.++...|+..+|...|..++..+
T Consensus 648 ~~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 648 LLQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 00011111 1111 555666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCHHHHHH--HHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 706 SGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 706 p~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
| +.+.+...+|.++...|+..-|.. +...+++. ++.++++|+++|.++.+.|+.+.|..+|..++.+.+++
T Consensus 715 P-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 715 P-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred C-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 556666666666666666666666 66666666 55556666666666666666666666666666666666
Q ss_pred hhhHh
Q 002286 784 YTLRF 788 (942)
Q Consensus 784 ~~~~~ 788 (942)
|...|
T Consensus 788 PV~pF 792 (799)
T KOG4162|consen 788 PVLPF 792 (799)
T ss_pred Ccccc
Confidence 65544
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.6e-23 Score=214.41 Aligned_cols=304 Identities=18% Similarity=0.173 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002286 378 TLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (942)
Q Consensus 378 ~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (942)
.+..+|..|... -+..+|+..|.+.-...++...+...+|..| +.++|++|..+|+.+.+..|-.-+ ..+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~--~meiy--- 393 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK--GMEIY--- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--chhHH---
Confidence 444455544433 3456777777775566666666666677777 777777777777666665443211 11222
Q ss_pred HHHHHHcCCHHHHHHHH-HHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSF-KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (942)
..+++...+.- ++.++ +..++ .+|..+.+|..+|.
T Consensus 394 ST~LWHLq~~v-~Ls~Laq~Li~-------------------------------------------~~~~sPesWca~GN 429 (638)
T KOG1126|consen 394 STTLWHLQDEV-ALSYLAQDLID-------------------------------------------TDPNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHh-------------------------------------------hCCCCcHHHHHhcc
Confidence 22222222211 11222 12222 56777888888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHH
Q 002286 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 613 (942)
+|.-+++++.|++.|+++++++|....+|..+|.=+.....++.|..+|+.++..+|.+-.+|+.+|.+|.++++++.|.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchH
Q 002286 614 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693 (942)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~ 693 (942)
-.|++++.+.|. .......+|.+ +... |+.++|+.+|++|+.++|.|+...+..|.++...+++++
T Consensus 510 ~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 510 FHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred HHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 888888888877 55556667777 7777 888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 694 A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
|+..++++.+..| +...+++.+|.+|...|+.+.|+..|.-|+...|.+.+
T Consensus 576 al~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8888888888877 67788888888888888888888888888887655544
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=213.71 Aligned_cols=302 Identities=20% Similarity=0.117 Sum_probs=235.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhhHhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGI 203 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~l 203 (942)
.....+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3446777899999999999999999999999999999999999999999999999999999988543321 2457889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHF 278 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~ 278 (942)
|.+|...|++++|...|.++++.+|.+..++..++.++...|+ +++|+..+.++++..|.+.. .+..++..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999988876532 345667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcHHHHHHHcCC
Q 002286 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGD 357 (942)
Q Consensus 279 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~ 357 (942)
...|++++|...+++++... |....+++.+|.++...|++++|+..|.+++.. .|.. ..++..++.++...|+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence 77778888887777777643 445567777777777777777777777777753 2322 3445667777777777
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h--cCCHhHHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKT 434 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~ 434 (942)
+++|+..+++++...|+...+ ..++.++...|++++|+..++++++..|++......++..+ . .|+..+++..+++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 777777777777777765433 67777777777777777777777777777765554444433 2 3467777777776
Q ss_pred HHHH
Q 002286 435 ARTL 438 (942)
Q Consensus 435 a~~~ 438 (942)
.++.
T Consensus 344 ~~~~ 347 (389)
T PRK11788 344 LVGE 347 (389)
T ss_pred HHHH
Confidence 6653
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=3e-21 Score=182.60 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=277.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.+..-.+.+|..++..|.+..|+..|..++..+|++..+++..|.+|...|+-..|+.-+.+++++.|+. ..++...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHHh
Confidence 456777888999999999999999999999999999999999999999999999999999999999999999 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
|.++.++|.++.|...|..++..+|++.... ..++.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------- 155 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------- 155 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------------------------------
Confidence 9999999999999999999999999754321 111111000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
..+......+...|+...|+.+....++ ..|..+..+...+.+|...|++..
T Consensus 156 -------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 156 -------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred -------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHH
Confidence 1122233445667888888888888887 567777888889999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~ 440 (942)
|+.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+-.. .+..++.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y----------------KklkKv~K 271 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY----------------KKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH----------------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876554322 22211111
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCC
Q 002286 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (942)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (942)
. ..-+.-....++|.+++...++.++..|. .
T Consensus 272 ~----------les~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~ 302 (504)
T KOG0624|consen 272 S----------LESAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------E 302 (504)
T ss_pred H----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------c
Confidence 1 01133345567888889999988884321 1
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHH
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 598 (942)
.+........+..++...|++.+|+....+++..+|+++.++...+..|.....|+.|+..|+++.+.++++..+...
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 222334455567788899999999999999999999999999999999999999999999999999999998776543
No 47
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-21 Score=195.98 Aligned_cols=471 Identities=16% Similarity=0.144 Sum_probs=305.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
....|...+..|+|+.|+.+|..++.++|.|...+.....++...|+|++|+.--.+..+++|+. +..|...|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45678899999999999999999999999999899999999999999999999999999999999 77799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|+|++|+..|.+.|+.+|+|......++.++... + .+...| ..|..+..++..-.. ++......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~-----~-~~~~~~--------~~p~~~~~l~~~p~t--~~~~~~~~ 147 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED-----Y-AADQLF--------TKPYFHEKLANLPLT--NYSLSDPA 147 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH-----H-Hhhhhc--------cCcHHHHHhhcChhh--hhhhccHH
Confidence 9999999999999999999999998888887222 1 111111 112222222111000 00011112
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH-----HHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-----ALTNF 365 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 365 (942)
|...+......|.....+.. -.....|...+...-. . .....+......+.... .....
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~-------d~r~m~a~~~l~~~~~-------~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLN-------DPRLMKADGQLKGVDE-------L--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred HHHHHHHhhcCcHhhhcccc-------cHHHHHHHHHHhcCcc-------c--cccccccccCCCCCCcccccCCCCCcc
Confidence 22222222222222111111 0011111111110000 0 00000000000000000 00000
Q ss_pred HHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc
Q 002286 366 EKVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 366 ~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
....+ ....-..-...+|....+..++..|+..|..++.++ .+...+...+-++ ..|.+...+.....+++.....
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00000 000012345677888888888888888888888888 7777777788888 8888877777776665543321
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCC
Q 002286 443 GEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (942)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (942)
... .-...+..+|..+...++++.|+.+|.+++....
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R----------------------------------------- 329 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR----------------------------------------- 329 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----------------------------------------
Confidence 000 0123344466777888889999999998876210
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
. ..+.......+++........-.+|.-...-..-|..++..|+|..|+..|.+++..+|+++..|.+.+
T Consensus 330 ---t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 330 ---T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred ---C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 1 344445566677777777777777777666667788888888999999988888888888888888888
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.+|.+.|.+..|+...+.++++.|+ ..-+++.-|.+ +..+ ++|++|++.|+++++.+|++..+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 8888888888888888888888776 66677777777 7777 88888888888888888888888887
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 002286 681 AGVVLAEKGQFDVSKDLFTQ 700 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~ 700 (942)
+..+...+.......++.++
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHh
Confidence 77777654333334444444
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=1e-21 Score=185.64 Aligned_cols=330 Identities=17% Similarity=0.219 Sum_probs=275.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHH
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~ 117 (942)
++.+-.+.+|..++..|++.+|+..|-.+++.+|+ ...+++..|..|+.+|+.. -|+.-+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~---------~Y~aifrRaT~yLAmGksk-----------~al~Dl 95 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN---------NYQAIFRRATVYLAMGKSK-----------AALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------hHHHHHHHHHHHhhhcCCc-----------cchhhH
Confidence 44556789999999999999999999999998874 3457788999999999987 799999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H------------HHHHHHHHHhcCChHHHH
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---A------------LLGQACVEFNRGRYSDSL 182 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~------------~~~~a~~~~~~g~~~~A~ 182 (942)
.+++++.|+...+...+|.+++++|.+++|...|+.+++.+|++.. + +......++..|++..|+
T Consensus 96 ~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 96 SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 9999999999999999999999999999999999999999996521 1 233445567789999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
.....+++..|-+ +..+...+.||...|++..|+..+..+-++..++.+.++.++.++...|+ .+.++...+.+++
T Consensus 176 ~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLK 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHc
Confidence 9999999999998 78889999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCc
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEF 341 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~ 341 (942)
++|++...+-.. +...+..+.++. +......++|.+++...++.++.-+. .+-.
T Consensus 252 ldpdHK~Cf~~Y-------KklkKv~K~les------------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 252 LDPDHKLCFPFY-------KKLKKVVKSLES------------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cCcchhhHHHHH-------HHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 999887544221 111222222222 23345678899999999999973222 1222
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
....-.+..++...|++.+|+..+..++..+|+++.++...+..|.-...|+.|+..|+++.+.++++..+...+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 334556788999999999999999999999999999999999999999999999999999999999987765544
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-19 Score=177.07 Aligned_cols=472 Identities=18% Similarity=0.198 Sum_probs=326.0
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|+..++.+.-+...|+..|.--..++++..|..+|++++..+..+...|+..+.+-++.+....|..++.+++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 274 (942)
- ...|+.....--.+|+..-|.++|++.++..|+ ..+|......-++.+. .+.|...|++.+-.+|+ ...+...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHHH
Confidence 8 777888888888999999999999999999996 6788888888888877 89999999998877754 4456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH
Q 002286 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 275 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~ 354 (942)
+..-...|+...+..+|+.++....++......+...|..-..+..++.|..+|.-++.
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld--------------------- 272 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD--------------------- 272 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 66666666666666666666655444433334444444444455555555555555554
Q ss_pred cCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH---HHH-----HHHHHHHHHhCcCcHHHHHHHHHHH-hcC
Q 002286 355 LGDFRSALTNFEKVLEIYPDN--CETLKALGHIYVQLGQI---EKA-----QELLRKAAKIDPRDAQAFIDLGELL-ISS 423 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~---~~A-----~~~~~~~l~~~p~~~~~~~~la~~~-~~~ 423 (942)
.-|.+ .+.+..+...--+-|+. +.+ .-.|++.++.+|.+.++|+.+-.+. ..|
T Consensus 273 ----------------~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 273 ----------------HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred ----------------hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 33333 12222222222222321 111 1234445555555555555555555 555
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC----HHHHHHHHH-HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP----IEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (942)
+.+.-.+.|++++...|....... .-+|.+.+. .-....+.+.+.+.|+.+++.-|.
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH------------------ 398 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH------------------ 398 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc------------------
Confidence 555555556555554333211111 111222221 123457788888888888875331
Q ss_pred hHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
..-....++...|....++.+...|.+++-.++..+|.+ ...-....+-.+.++++..
T Consensus 399 ---------------------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 399 ---------------------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred ---------------------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 111245677777888888899999999999999999976 4555556667788999999
Q ss_pred HHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHH
Q 002286 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 658 (942)
Q Consensus 579 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~ 658 (942)
..+|++.+...|.+..+|..+|.+-...|+++.|...|+-+++...- +..-++.-+ |... +...|.++
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~e 524 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFE 524 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHH
Confidence 99999999999999999999999999999999999999988876432 333332222 3222 11227788
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 659 KAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+|..+|++.|...+... +|...|
T Consensus 525 kaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HHHHHHHHHHHhcccch-HHHhHH
Confidence 88888888887766544 444433
No 50
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=7.4e-22 Score=215.89 Aligned_cols=203 Identities=21% Similarity=0.225 Sum_probs=116.4
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCC
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 424 (942)
.+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+....
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------- 104 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------- 104 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-------------
Confidence 4445666666666666666666666666666666666666666666666666666665543211110
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
....++..+|.++...|++++|+..|.+++.
T Consensus 105 ---------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~---------------------------- 135 (389)
T PRK11788 105 ---------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD---------------------------- 135 (389)
T ss_pred ---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----------------------------
Confidence 0123445556666666666666666666655
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCChhHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSI 579 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~A~ 579 (942)
..|....++..++.++...|++++|+..+..++...|.+. ..+..+|.++...|++++|+
T Consensus 136 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 136 ---------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred ---------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2334455566666666666666666666666666555431 23445555566666666666
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCC
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 624 (942)
.+++++++.+|++..++..+|.++...|++++|+..|++++...|
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 666666666665555555555555555555555555555544433
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.4e-19 Score=188.61 Aligned_cols=441 Identities=17% Similarity=0.142 Sum_probs=330.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~l 203 (942)
+++..|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+.+..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888889999999999999999999998887888999999999999999999999999999988 77766666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhhcc--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
..|+...|..++++.+-.+++.... -.+.++..+|.+|...-. ..-..++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7788889999999999999998432 135567777777755422 122678899999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHH
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 350 (942)
.++++.-|...++.+.|......++...+ ...+.+|..++.++...+++.+|+.....++..+ +++.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 99999888888888888888888887632 3445788888888888888888888888888744 344444455556
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH-hcC---CH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELL-ISS---DT 425 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~-~~~---~~ 425 (942)
+-...++.++|+..+...+........+-..++ .|....-..-+.-+.. +|.+. .....+.... ..+ .+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~-----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLD-----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 666678888888888887776544444333333 1111100000000111 11111 1111111111 000 00
Q ss_pred hHHHHHHHHHHHHHHHc-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 426 GAALDAFKTARTLLKKA-GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
+.. +...... ++.. ...+|...+..+...++.++|..++.++..
T Consensus 630 e~~-------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------------ 678 (799)
T KOG4162|consen 630 ELK-------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK------------------------ 678 (799)
T ss_pred ccc-------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh------------------------
Confidence 000 0000000 0000 135677788899999999999999999987
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
..|..+.+++..|.++...|+..+|.+.|..++..+|+++.+...+|.++...|+..-|..
T Consensus 679 -------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 679 -------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred -------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 5678999999999999999999999999999999999999999999999999999888888
Q ss_pred --HHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCc
Q 002286 581 --LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (942)
Q Consensus 581 --~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 627 (942)
.+..+++.+|.++++|+.+|.++.+.|+.+.|.++|..++++.++..
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999999999876633
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.5e-19 Score=171.69 Aligned_cols=419 Identities=15% Similarity=0.094 Sum_probs=301.9
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
......+.||...++-+.|+.........- ..+.....++..+..-++ -.++.-.+...+...|--..+...++..
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r---~~~~vl~ykevvrecp~aL~~i~~ll~l 173 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSR---HKEAVLAYKEVIRECPMALQVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhcccc---ccHHHHhhhHHHHhcchHHHHHHHHHHH
Confidence 345556667777777777666554432211 133444455555544444 2344444444444444222221111111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
-. .|. + .-..--..+...+..|. ......+.+.+..++...|...+--+-. ...-++++.....+|.+++..|+
T Consensus 174 ~v-~g~-e-~~S~~m~~~~~~~~~dw--ls~wika~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 174 GV-NGN-E-INSLVMHAATVPDHFDW--LSKWIKALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred hh-cch-h-hhhhhhhheecCCCccH--HHHHHHHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcC
Confidence 00 000 0 00011111111212221 1222234444455555555444433322 11457778888899999999999
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (942)
+.+|+..|+++...+|.+...+-..|.++...|+++.-.......+..+.....-|+.-+.++ ..+++..|+.+-++++
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988888888888766677777777766 9999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCC
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (942)
+..+. +...+...|.++...|+.++|+-.|+.+..
T Consensus 328 ~~~~r-----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---------------------------------------- 362 (564)
T KOG1174|consen 328 DSEPR-----NHEALILKGRLLIALERHTQAVIAFRTAQM---------------------------------------- 362 (564)
T ss_pred ccCcc-----cchHHHhccHHHHhccchHHHHHHHHHHHh----------------------------------------
Confidence 87655 567888889999999999999999999988
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhhcCCChh
Q 002286 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
..|....++..+..+|...|.+.+|.-..+.++...|.++.++..+| .++. .-.--++|.+++++++.+.|....
T Consensus 363 ---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 363 ---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred ---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 56778899999999999999999999999999999999999988886 4433 334457899999999999999999
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 674 (942)
+...++.++...|.+..++..+++.+...+ |...+..||++ +... +.+.+|++.|..+++++|++
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999998876 55667789999 8887 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 002286 675 LYAANGAGVVLAEKG 689 (942)
Q Consensus 675 ~~a~~~la~~~~~~g 689 (942)
..+.-++-.+-.+..
T Consensus 505 ~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSDD 519 (564)
T ss_pred hHHHHHHHHHHhccC
Confidence 888877755544433
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-18 Score=167.73 Aligned_cols=432 Identities=16% Similarity=0.101 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHHHhhc--------------------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 107 EEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
+..|..|...|..++.+ .|.+.......+.+|...|+-+.|+.....+...- ..+...+
T Consensus 56 ~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inl 134 (564)
T KOG1174|consen 56 ERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINL 134 (564)
T ss_pred HHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHH
Confidence 45566666666666543 23455667778899999999999998887654322 2456667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHH
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR-YKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDL 242 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~ 242 (942)
.++..+..-++-.++.-.|..++...|-. +-.++..+ ....-++.+-- --.++...|..+..| ..++.+..
T Consensus 135 Mla~l~~~g~r~~~~vl~ykevvrecp~a----L~~i~~ll~l~v~g~e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~ 209 (564)
T KOG1174|consen 135 MLARLQHHGSRHKEAVLAYKEVIRECPMA----LQVIEALLELGVNGNEINSL-VMHAATVPDHFDWLSKWIKALAQMFN 209 (564)
T ss_pred HHHHHHhccccccHHHHhhhHHHHhcchH----HHHHHHHHHHhhcchhhhhh-hhhheecCCCccHHHHHHHHHHHHHh
Confidence 77777777677667777777777665533 11111111 11111221111 112334445444332 23333433
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHH
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (942)
..+. +.-+..++-.-....|++...+..+|.+++..|++.+|+..|+++.... |....+.-..|..+...|+++
T Consensus 210 ~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 210 FKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred cccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHh
Confidence 3333 5555566666677789999999999999999999999999999888644 666677777888888899988
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 402 (942)
+--.+....+. ........|+--+...+..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 284 ~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 87777777665 334555668888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHcCCHHHHHHHHHHHhhcch
Q 002286 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~-~~-~~~~g~~~~A~~~~~~al~~~~ 479 (942)
..+.|.+...|..+..+| ..|.+.+|....+.+++.++. +...+..+| .+ +...---++|.+++++++.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 999999999999999999 999999999999999998887 466676665 33 3344456788899998888
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (942)
..|....+...+|.++...|.+..++.++++.+...|+.
T Consensus 433 ----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 433 ----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred ----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence 678888888899999999999999999999999988876
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
..+..||.++...+.+.+|+.+|..++.++|++..+...+-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6788899999999999999999999999999887766554443
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-16 Score=156.88 Aligned_cols=465 Identities=15% Similarity=0.162 Sum_probs=261.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHH
Q 002286 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (942)
Q Consensus 32 ~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~ 111 (942)
-++-..-+...|+..|.--..|+++..|..++++++..+. ..+.++...+.+-++. ....
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---------r~itLWlkYae~Emkn-----------k~vN 124 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---------RNITLWLKYAEFEMKN-----------KQVN 124 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---------ccchHHHHHHHHHHhh-----------hhHh
Confidence 3444455566777777777777777777777777776542 1233333333333332 2333
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.|..++++++.+-|.-...|+....+--..|+..-|.++|++-+...| +..+|......-.+-++.+.|..+|++.+-.
T Consensus 125 hARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 125 HARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 677777777777777777777777777777777777777777777776 3566766666666777777777777777777
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+|+. ..|+..+..-.+.|+..-|..+|++|++.-.++..+ +...+..-..+.. ++.|.-.|.-++..-|.+.
T Consensus 204 HP~v--~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE---~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 204 HPKV--SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE---YERARFIYKYALDHIPKGR 278 (677)
T ss_pred cccH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccc
Confidence 7664 446666777777777777777777777665443322 3334444444444 6777777777777666652
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 002286 269 --MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (942)
Q Consensus 269 --~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 346 (942)
..+..+...--+-|+........-. +-.--|+..+. .+|.+..+|+
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~-----------------------------KRk~qYE~~v~---~np~nYDsWf 326 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVG-----------------------------KRKFQYEKEVS---KNPYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhh-----------------------------hhhhHHHHHHH---hCCCCchHHH
Confidence 2333332222233333221111100 00011222232 3444445555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHHHH-HHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCE---------TLKALGH-IYVQLGQIEKAQELLRKAAKIDPRD----AQA 412 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~----~~~ 412 (942)
..-.+-...|+.+.-.+.|++++...|...+ .|.+.+. .-....+.+.+.++|+.++++-|.. +..
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKi 406 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKI 406 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHH
Confidence 5444444555555555555555554443221 1111111 0112355666666666666665542 445
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccch
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (942)
|+..+... .+.+...|...+-.++...|+ ..++.....+-.+.++++....+|++.+.
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~efDRcRkLYEkfle--------------- 465 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLREFDRCRKLYEKFLE--------------- 465 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 55555555 556666666666666555443 34444445555566666666666666666
Q ss_pred hhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--H
Q 002286 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI--A 569 (942)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~ 569 (942)
..|.+..++...|.+-..+|+.+.|..+|+-++....-+..-++..+.+ -
T Consensus 466 ----------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE 517 (677)
T KOG1915|consen 466 ----------------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE 517 (677)
T ss_pred ----------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh
Confidence 4566666677777777777777777777776666543333323333322 3
Q ss_pred HHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 570 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
...|.++.|..+|++.+...+... +|...+.+-.
T Consensus 518 i~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 518 IEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred hhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 456677777777777776665544 5555555543
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=7.9e-21 Score=195.68 Aligned_cols=265 Identities=20% Similarity=0.253 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
..++.+++..|++++|+..+.+.+... .+|.++..+..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997765521 246788889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHH
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (942)
|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+.. .++..+..+..++...|++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999998889899888 79999999999999988766 457777788888999999999
Q ss_pred HHHHHHHhhccCC-CCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 002286 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (942)
Q Consensus 612 A~~~~~~~~~~~~-~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 690 (942)
+...++.+....+ ..+...+..+|.+ +... |+.++|+..|+++++.+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776442 3467778889998 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHH
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 770 (942)
.+++...+.......| .++..|..+|.++..+|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 78889999999999999999999999999998 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 002286 771 KSLLRAIHL 779 (942)
Q Consensus 771 ~~~~~al~~ 779 (942)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888753
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=5.9e-17 Score=154.40 Aligned_cols=450 Identities=15% Similarity=0.163 Sum_probs=262.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
...+|..|+.+++-.+..+.+....+...+|.|++.+|+|++|...|+-+.+.+.-+.+.+..|+.+++-.|. |.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHH
Confidence 4455556665555555444333234445566666666666666666665555444445555555555555554 5544
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.....+ .|++|.... .+-.+.++.|+-++-. .|...++
T Consensus 111 ~~~~~k----a~k~pL~~R-------------------------------------LlfhlahklndEk~~~-~fh~~Lq 148 (557)
T KOG3785|consen 111 KSIAEK----APKTPLCIR-------------------------------------LLFHLAHKLNDEKRIL-TFHSSLQ 148 (557)
T ss_pred HHHHhh----CCCChHHHH-------------------------------------HHHHHHHHhCcHHHHH-HHHHHHh
Confidence 443332 233321111 1111122233322222 2222221
Q ss_pred hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Q 002286 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (942)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 413 (942)
+...-...++.+.+..-.|++|+..|.+++..+|+.......++.||.++.-++-+.+++.-.++..|+++.+.
T Consensus 149 ------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 149 ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred ------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 22234566778888888889999999999888888888888899999999999999999888888889888777
Q ss_pred HHHHHHH-h--cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccc
Q 002286 414 IDLGELL-I--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 490 (942)
Q Consensus 414 ~~la~~~-~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 490 (942)
...+... . .|+..++ -..... ..... .+..+....+.-+
T Consensus 223 NLkacn~fRl~ngr~ae~--E~k~la---dN~~~------------------~~~f~~~l~rHNL--------------- 264 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAED--EKKELA---DNIDQ------------------EYPFIEYLCRHNL--------------- 264 (557)
T ss_pred HHHHHHHhhhhccchhHH--HHHHHH---hcccc------------------cchhHHHHHHcCe---------------
Confidence 6666544 2 2332221 111111 00000 0111111111000
Q ss_pred hhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002286 491 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 570 (942)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 570 (942)
.--.+-+.|++.+-.++..-| ++..+++..|.
T Consensus 265 ---------------------------------------------VvFrngEgALqVLP~L~~~IP---EARlNL~iYyL 296 (557)
T KOG3785|consen 265 ---------------------------------------------VVFRNGEGALQVLPSLMKHIP---EARLNLIIYYL 296 (557)
T ss_pred ---------------------------------------------EEEeCCccHHHhchHHHhhCh---Hhhhhheeeec
Confidence 001122334444443333333 45555555566
Q ss_pred HcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccch-------HHHHHHHHHhhccCCCC-chhHHHhhhhHHHHHH
Q 002286 571 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-------VKAKETFRAASDATDGK-DSYATLSLGNWNYFAA 642 (942)
Q Consensus 571 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~y~~~ 642 (942)
++++..+|+.+.+. ++|..|.-+...|.++...|+- .-|...|.-+-.....- .....-+++.. ++..
T Consensus 297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~ 372 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS 372 (557)
T ss_pred ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH
Confidence 66666666555443 4555665555555555555542 23333333222211111 12223345666 7777
Q ss_pred HhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 002286 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 722 (942)
Q Consensus 643 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 722 (942)
.++++.+.++...-...-++.....++|.+....|++.+|.+.|-++....- .+.......+|.
T Consensus 373 ------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 373 ------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLAR 436 (557)
T ss_pred ------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHH
Confidence 8899999988888777788888888999999999999999999988854331 123444557899
Q ss_pred HHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 723 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
||...|++..|..+| ++.......-..+..++..+++.|.+--|-+.|...-.++|+.
T Consensus 437 Cyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 999999999998886 4432122225666778999999999999999999988888864
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=8.2e-18 Score=182.20 Aligned_cols=306 Identities=14% Similarity=0.075 Sum_probs=238.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
....|...+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..++.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678889999999999999999999999888888999999999999999999999999988888445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (942)
|+++.|...++++++..|+++.++..++.++...|+ +++|...+.+..+..+.++.... .........+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999887555443332 11222233334444
Q ss_pred HHHHHHHHHhcCC-CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 287 a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
+...+..+....+ ..+.++..+..++..+...|++++|...+.++++..++++..... ..........++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence 4445555554332 223567888889999999999999999999999844332221101 22233334457888899999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002286 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (942)
++.++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|+... +..+|.++ ..|+.++|..++++++...-
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999999 888899999999999999999999 57777887665 45888888 89999999999988876644
Q ss_pred H
Q 002286 441 K 441 (942)
Q Consensus 441 ~ 441 (942)
.
T Consensus 402 ~ 402 (409)
T TIGR00540 402 A 402 (409)
T ss_pred c
Confidence 3
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3e-19 Score=168.12 Aligned_cols=419 Identities=16% Similarity=0.136 Sum_probs=304.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHH-HHHhC--CCC----
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--------GRYSDSLEFYKR-ALQVH--PSC---- 195 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~-~l~~~--p~~---- 195 (942)
-+.++..++....|+...+++..+++..|++-.+|..++.++... .+-..|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 356788899999999999999999999999988998888887654 222344444432 22221 111
Q ss_pred ---c-----hh-----------hHhhHHHH-HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhccHHhHHHH
Q 002286 196 ---P-----GA-----------IRLGIGLC-RYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 196 ---~-----~~-----------~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
+ .. .....+.. -.+-|..+.|+..-..+..-.|- ...-...+|..-...+..+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG----- 161 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDG----- 161 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCc-----
Confidence 0 00 00001111 12233444444332222111110 0111223333333322211
Q ss_pred HHHHHHHHHhCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCch---hHHHHHHHHHHHhcCCH
Q 002286 254 MEKMQRAFEIYPY----CAMA-LNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTK---SHSYYNLARSYHSKGDY 321 (942)
Q Consensus 254 ~~~~~~~~~~~p~----~~~~-~~~la~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~---~~~~~~la~~~~~~g~~ 321 (942)
-|-.+-+++|+ .+.. ....-.+|+..++...|-.+....+..... .... ...-..+|.+|...|-+
T Consensus 162 --~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~ 239 (478)
T KOG1129|consen 162 --KFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMP 239 (478)
T ss_pred --ceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcCh
Confidence 11122223322 2222 222234566677777776655554432111 1111 12234589999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (942)
.+|.+.++.++.. ...+..+..|+.+|....++..|+..+...++..|.+...+...+.++..+++.++|.++|+.
T Consensus 240 r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred hhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 9999999999964 445667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchh
Q 002286 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (942)
Q Consensus 402 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 480 (942)
+++.+|.+.++.-.++.-| -.++++-|+.+|++.+++--. +++++.++|.+++-.++++-++..|++++....
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat- 389 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT- 389 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-
Confidence 9999999999999999888 899999999999999987443 689999999999999999999999999998532
Q ss_pred hhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHH
Q 002286 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560 (942)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 560 (942)
.+.....+|+++|.+....|++..|...|+-++..+|++.+
T Consensus 390 ---------------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 390 ---------------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred ---------------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 34456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc
Q 002286 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (942)
Q Consensus 561 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 605 (942)
++.+|+.+..+.|+.++|..+++.+....|+-.+..++++.+-..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 999999999999999999999999999999988888777655443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.84 E-value=1.5e-14 Score=149.03 Aligned_cols=665 Identities=14% Similarity=0.105 Sum_probs=437.3
Q ss_pred ccCChHHHHHHHHHHHHcCCH-HHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhh-hhhhhhHHHHHHH
Q 002286 36 EQAPLDLWLIIAREYFKQGKV-EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFILA 113 (942)
Q Consensus 36 ~~~~~~~~~~~a~~y~~~g~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~-~~~~~~~~~~~~A 113 (942)
.|-+...|+.... +++|.. .+-..+|++++..-|.+ +.+..-|++.-... ...-..+..|..-
T Consensus 23 np~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp~s-------------ykiW~~YL~~R~~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 23 NPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELPGS-------------YKIWYDYLKARRAQVKHLCPTDPAYESV 87 (835)
T ss_pred CchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCCCc-------------hHHHHHHHHHHHHHhhccCCCChHHHHH
Confidence 4667788987543 334443 44455778888765532 12233333211100 0000124455666
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
-.+|++++-.-..-|..|+.....+..+|+...-...|++++..-|- +...|-..-......|-.+-++..|++-++.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 67777777665667889999999999999999999999999988773 3445555555566778888999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.|.. .......+...++.++|.+.+...+.. .|.+...|..+..+.....+...--.--..++..+...
T Consensus 168 ~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 APEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred CHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 9987 333456677899999999999998764 34566778877777766544222222334556666667
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCCc
Q 002286 265 PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHEF 341 (942)
Q Consensus 265 p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--a~~~~~~~~~~ 341 (942)
++.. ..|..||..|.+.|.+++|..+|+.++...-.-.+...++...+ .|++..-...- +.....+..+.
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhh
Confidence 7654 68889999999999999999999999875433222222222211 12221111110 11111111111
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCc-----HHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRD-----AQAFID 415 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~-----~~~~~~ 415 (942)
...-..++..-.-......- .=.-++..+|++...|.....+ ..|+..+-+..|..++. .+|.- ...|..
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 11112222211111111110 1112356688888888776555 46788888899988875 45543 568999
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhh--hccccccchh
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT--LLDSKTKTYV 492 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~ 492 (942)
+|.+| ..|+.+.|...|+++....-. ....-..+|...|..-....+++.|+.+.+.+...+.... ..++...
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p--- 468 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP--- 468 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc---
Confidence 99999 999999999999998864211 1111247888889889999999999999999987543211 1111100
Q ss_pred hhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (942)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 572 (942)
.+. .--.+..+|..++......|-++.....|++++.+---.+....+.|..+...
T Consensus 469 -------vQ~-----------------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 469 -------VQA-----------------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred -------HHH-----------------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000 00125567888899999999999999999999998888888999999999999
Q ss_pred CChhHHHHHHHHHHhhc--CCChhHHHHhhhhhc---cccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhh
Q 002286 573 NNLQLSIELVNEALKVN--GKYPNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (942)
Q Consensus 573 ~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~ 647 (942)
.-++++.+.|++.+.+. |.-.++|..+-.-.. ..-..+.|...|+++++..|+......+.+ |...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl----YA~l----- 595 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL----YAKL----- 595 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHH-----
Confidence 99999999999999987 444556654433322 234689999999999998775444332221 2222
Q ss_pred cChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 648 RAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
+.+-|-...|+++|+++-..- +.+...++++-+.-. ..--...-..+|+++++..|++ .........+..-.
T Consensus 596 ---EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 596 ---EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLET 669 (835)
T ss_pred ---HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhh
Confidence 111188899999999987644 334444443322111 1223456688999999998854 34556677899999
Q ss_pred HhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 002286 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 773 (942)
..|..+.|...|.-+-+..+...++..+...-..-.+.|+-+.-++.+
T Consensus 670 klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999888766666888887777778889855444443
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=2.4e-20 Score=192.06 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=93.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
.+|.+++..|++++|+.++.+.+... |++ +..|..+|.+...+++++.|+..|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666664443332 333 45555566666666666666666666666666555555555555 444
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (942)
++ +++|+..+.++++..+ ++..+...+.++...++++++..+++.+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44 6666666665555442 34444455555566666666666666655322 2234556677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
+..|+++++ ..|++..+...++.+++..|+++++...+....+..|+++..+..+|.++..+|++++|+.+|+++++
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777776 45666666777777777777777777777777776677777777777777777777777777777777
Q ss_pred hCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHH
Q 002286 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (942)
.+|+++.++..+|.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777 777777777777766543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=4.7e-18 Score=191.14 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=172.7
Q ss_pred cCCCCcc--hHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHH
Q 002286 123 IDMHEPS--TWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRA 188 (942)
Q Consensus 123 ~~p~~~~--~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~ 188 (942)
..|.+.+ .++.+|..++.. +.+++|+..|+++++.+|+++.++..+|.++... +++.+|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3444443 344455544433 3467888888888888888888887777766533 3367888888888
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
++.+|++ +.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++
T Consensus 331 l~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 331 TELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRA 406 (553)
T ss_pred HhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCh
Confidence 8888887 66677788888888888888888888888888888888888888888887 8888888888888888777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.....++..++..|++++|+..+.+++... +|..+..+..+|.++...|++++|...+.++.. ..|....+...+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l 481 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLL 481 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHH
Confidence 555555555555666666666666555432 133445566666666666666666666665544 344445555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
+..|...|+ .|...++++++.....+.-......+|.-.|+.+.+... +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 555555553 555555555443222222222255555556665555555 44443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=163.48 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=239.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.+++..++...|-..+...+..+ |. +..--..+|.||++.|-+.+|.+.++..++..|-. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 45566677777776666655432 21 11223568999999999999999999999988764 66788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
+|.+..++..|+..|...++..|.++..+...+.++...++ +++|+++|+.+++.+|.+.++....+.-|+..++++
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
-|+.+|.++++.. ...++.+.++|.+++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999877 4445899999999999999999999999999866566777888999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 418 (942)
+-++..+|++.+++.++|.+-.+.|+.++|..++..+....|+-.+..++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999987776666543
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=1.6e-16 Score=171.02 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=227.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
.+..|...+..|++++|.+.+.+.....+.....+...+......|+++.|..+|.++.+.+|+.........+..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45677788889999999988887655443333344444666699999999999999999988887444445568899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHHHhcC
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--------la~~~~~~g 282 (942)
|+++.|...++++.+.+|+++.++..++.++...|+ +++|+..+.+..+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999999888877665543221 111111222
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (942)
+.+....+++.. +...|.++.....++..+...|+.++|...+.++++ .++ ....... ......+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 223333333332 223366778999999999999999999999999986 222 2222222 2223458999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
..+++.++.+|+++..+..+|.++...|++++|..+|+++++..|++.. +..++.++ ..|+.++|..+|++++...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999997654 56789999 9999999999999887754
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=2.1e-17 Score=185.86 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=161.0
Q ss_pred hCCCCHHH--HHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---------CCHHHHHHHHHH
Q 002286 157 ADRDNVPA--LLGQACVEFN---RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQR 222 (942)
Q Consensus 157 ~~p~~~~~--~~~~a~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 222 (942)
..|.+..+ ++..|..+.. .+++++|+.+|+++++.+|++ +.++..+|.|+... +++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 3444544433 356789999999999999999 77788999888744 348999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 002286 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (942)
Q Consensus 223 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~ 302 (942)
+++++|+++.++..+|.++...|+ +++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999999 9999999999999999999777777777777777766666666666554 2
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (942)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (942)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....+...+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 22233334444455555566666665555542 1244444455555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l 403 (942)
+..|...|+ .|...+++++
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHhccHH--HHHHHHHHHH
Confidence 555555552 4444444433
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=3.6e-16 Score=169.44 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+|++..|.+.+.++.+..|.....++..|.++..+|+++.|...+.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666999999999999998888889999999999999999999999999999875 56777899999999999999999
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
+.+++..|++ +.++..++.++...|+++.|...+.+..+..+.++.... ....-....+. .+++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 678899999999999999999999999987555444332 11111123333 455666777888
Q ss_pred HhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
...| +++..+..++..+...|+++.|...++++++..++++.... ...........++.+.+...++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 58999999999999999999999999999987644432111 12333344556889999999999998 5
Q ss_pred CCCch--hhhhcHHHHHHHcCChHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
.|+++ .....+|.+++..|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|..++++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778888766 559999999999999999999998754
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.80 E-value=4e-13 Score=138.77 Aligned_cols=595 Identities=12% Similarity=0.118 Sum_probs=339.1
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHH--cC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLA--KG------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~--~g------~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
.-+|+++++.-|.+...|+..-..-.. .+ -|..--.+|++++-.-.+-+..|+.....+..+|+...-...|
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555555555555555433211111 11 2333344444544444444555555555555555555555555
Q ss_pred HHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 186 KRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 186 ~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.++|..-|-. ...+|-..-......|-++-++..|++.++.+|...+-+ ...+...++ .++|.+.+...+..+
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eey---ie~L~~~d~---~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEY---IEYLAKSDR---LDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHH---HHHHHhccc---hHHHHHHHHHhcCch
Confidence 5555554432 112222222333344445555555555555555432221 222233333 555555555444321
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 002286 265 -------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (942)
Q Consensus 265 -------p~~~~~~~~la~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 334 (942)
+.+...|..+..+....-+.-. ...++...+... .......|..+|..|.+.|.++.|...|++++..
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3333444444444433333222 222222222221 1112344555555555555555555555555543
Q ss_pred cCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--h--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
.-...++...+-. |. .+++....+.--+. . ++ +..+.-..++..-.-+.....- .-.-++..+|++
T Consensus 278 v~tvrDFt~ifd~----Ya---~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~n 348 (835)
T KOG2047|consen 278 VMTVRDFTQIFDA----YA---QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL--LNSVLLRQNPHN 348 (835)
T ss_pred heehhhHHHHHHH----HH---HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCCcc
Confidence 2222222222111 11 01110000000000 0 00 0111111222211111111110 011234567888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccc
Q 002286 410 AQAFIDLGELLISSDTGAALDAFKTARTLLK-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (942)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (942)
...|.....++ .|+..+-+..|..++.... ......+..+|...|.+|...|+.+.|...|+++...+..
T Consensus 349 V~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-------- 419 (835)
T KOG2047|consen 349 VEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-------- 419 (835)
T ss_pred HHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--------
Confidence 88887776665 5678888888888877543 3233334588999999999999999999999999884210
Q ss_pred cchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-----------
Q 002286 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD----------- 557 (942)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------- 557 (942)
.-.+-..+|...|..-....+++.|..+.+.+......
T Consensus 420 -------------------------------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 420 -------------------------------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred -------------------------------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 11234678888999999999999999999988753211
Q ss_pred -------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH
Q 002286 558 -------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 558 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
+...|..++.+....|-++.....|++++.+---.|.+..++|.++....-++++.+.|++.+.+.+-+..+-
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1456677777788889999999999999999988999999999999999999999999999999886655432
Q ss_pred HHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 002286 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 708 (942)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 708 (942)
+.+. |+...-..- ...+.+.|..+|++++...|.. -..+...+..-.+-|-...|+.+|+++-...+
T Consensus 549 ---iW~t-YLtkfi~ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~-- 617 (835)
T KOG2047|consen 549 ---IWNT-YLTKFIKRY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK-- 617 (835)
T ss_pred ---HHHH-HHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC--
Confidence 3333 433311111 1156899999999999988742 22344445566677999999999999877553
Q ss_pred CCCCchhHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 709 VFVQMPDVWINLAHVYFA-----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 709 ~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
+.-.+.+-.+|.. -| ...-...|++|++..|+..-...-...+..-.+.|..+.|..+|.-.-++.|.
T Consensus 618 -----~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 618 -----EAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred -----HHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 2223333333322 12 23456789999998665555666677788888999999999999887777553
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.3e-15 Score=145.42 Aligned_cols=379 Identities=15% Similarity=0.141 Sum_probs=258.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHH
Q 002286 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (942)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (942)
-++...+|..|+.+++..+..+... ...-..+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3456678999999998887655433 3567788999999999999999999888743 3347889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 216 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
|...-.+ .|+++-....+-.+..+.++ ++-+..|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd----Ek~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND----EKRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHh---------------------------------
Confidence 9887665 57777777777777777776 222222222111
Q ss_pred hcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
+..+-...++.+.+..-.|.+|++.|.+.+. ++|+.......++.+|.++.-|+-+.+.+.-.+...|+.
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113345667777777788999999999987 777877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (942)
+.+....+....+.=.-..|..-....... +...+.+-..+-.-+ --.+-+.|+..+-..++. -|++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhh
Confidence 999888888877763333343333333321 111122211111111 122345555555544443 3566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH
Q 002286 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (942)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (942)
+...|.++++..+|....+. .+|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 88888888888888877765 45666666777777
Q ss_pred HHhhcCCHHHHHHHHHHHH---HhC------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 534 LLEQIHDTVAASVLYRLIL---FKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l---~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
++...|+--...+.++-+- ..- -+.......++..++-..++++.+.+++..-....++....++++.+++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 7777776544443333222 211 1223445566666666777888888887777777777777778888888
Q ss_pred cccchHHHHHHHHHhhc
Q 002286 605 KNDDWVKAKETFRAASD 621 (942)
Q Consensus 605 ~~g~~~~A~~~~~~~~~ 621 (942)
..|++.+|.+.|-++..
T Consensus 405 atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISG 421 (557)
T ss_pred HhcChHHHHHHHhhhcC
Confidence 88888888887776543
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=5.5e-16 Score=166.84 Aligned_cols=297 Identities=14% Similarity=0.115 Sum_probs=235.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHh
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQ 243 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~ 243 (942)
.+..|...+..|+|+.|.+...+.-...+. +...+...+......|+++.|..+|.++.+.+|++..+. ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345566777789999999888776554333 244444456666999999999999999999999986443 455899999
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH-----HHHHHHHHHHhc
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~la~~~~~~ 318 (942)
.|+ +++|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876654433222 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (942)
.+.+.....+..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 333344444443333 34667888999999999999999999999999994 5566555555554 44999999999
Q ss_pred HHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 399 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+++.++.+|+++..+..+|.++ ..+++++|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987554 566778999999999999999999999874
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-14 Score=148.55 Aligned_cols=399 Identities=15% Similarity=0.122 Sum_probs=240.8
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCH
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~ 425 (942)
+..+.|.++.+..++|+..++ ..++.+..++...|.+++++|+|++|..+|+.+++.+.++.+.......+-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--- 156 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--- 156 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---
Confidence 456667777777777777766 23455555667777777777777777777777766655544433222221100
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
.+... +.++..|.. ...+.+.+++.+.++...|+|.+|++.+++++..+... +..+..
T Consensus 157 -a~l~~--~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-l~~~d~----------------- 214 (652)
T KOG2376|consen 157 -AALQV--QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-LEDEDT----------------- 214 (652)
T ss_pred -HhhhH--HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-hccccc-----------------
Confidence 00000 011111111 12245788888999999999999999999997654211 000000
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHcCChh-HHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----YLRLAAIAKARNNLQ-LSIE 580 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~~~~~-~A~~ 580 (942)
..-+.......+...++.++..+|+..+|..+|..++..+|.+... -+++..+-....-++ .++.
T Consensus 215 ----------~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 215 ----------NEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 0000222345678889999999999999999999999998876432 223322221111122 1222
Q ss_pred HHHHHHhhcCC----------ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcCh
Q 002286 581 LVNEALKVNGK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 650 (942)
Q Consensus 581 ~~~~~l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~ 650 (942)
.++......++ -..++.+.+.+.+..+..+.+.+.....-...|.....++ +-.. +...
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-------- 353 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-------- 353 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH--------
Confidence 23222222211 1224555666666666666666666554444443222221 1111 1111
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHHh
Q 002286 651 KLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQ 727 (942)
Q Consensus 651 ~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~la~~~~~~ 727 (942)
...+.+|.+++......+|.+ ..+...++.+.+.+|++..|+.++....+....+ .....|.+--.+-..+...
T Consensus 354 ---~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 354 ---EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred ---HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 146889999999999999997 7788889999999999999999999443221100 0003555555666677777
Q ss_pred cCHHHHHHHHHHHHhhhCCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 728 GNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 728 g~~~~A~~~~~~al~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
++.+.|...+..++.-+..... ...+-.++..-.+.|+-++|...+++.++.+|++..+.-.+..+|..
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 8777777777777765533222 33444556666778999999999999999999998877766555443
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.7e-16 Score=143.55 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=179.3
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
..+++.+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688899999999999999999999999999999999999999999999 899999999999999999999988888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
.++..|.+++|...|++++..+ ..+..+.++.++|.|..+.|+++.|..+|++++. .+|.+..+...++...+..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888754 4456678888888888888888888888888887 66777788888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|..|..+++......+-..+.+.....+-...|+.+.+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888888777778888888888888888888888877777888876654
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1e-14 Score=149.40 Aligned_cols=460 Identities=14% Similarity=0.074 Sum_probs=301.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++++|++|....++++.+.|+++.+......++.+.++|++|+...+.-....-.+. ..+..|.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 467888999999999999999999999999999999999999965554332222222 2379999999999999999999
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
+ ..++.+ ..+....|.+++++|+|++|..+|+..++.+.++.+.......+..... ..+ . ..+.....|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-----l~~-~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-----LQV-Q-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-----hhH-H-HHHhccCCC
Confidence 8 345555 5567889999999999999999999999888777766554444322211 011 1 333444445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCC-----chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----T--NHGP-----TKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
. +...+++.+.++...|+|.+|+++++.++.. . +... ....+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5578999999999999999999999999421 1 1111 113456778999999999999999999999
Q ss_pred HhcCCCC-CchhhhhcHHHHHHHcCChH-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
+..+.+. ....+-.++..+-....-++ .++..++......++ -..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8533222 22222333322222111111 122222222222111 12355566666666676666666655
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
..-...|............. ....+..+...+....+..|. ....+...++.+....|++..|+..+...+..
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~-- 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLES-- 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--
Confidence 54444454433333333333 333566777666665543332 13568888899999999999999999855521
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC----
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY---- 555 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 555 (942)
|.+.+. .....+.+...+-.+++..++.+.|...+.+++.-.
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 111233444455556677777777777777776522
Q ss_pred ---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 556 ---QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 556 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
+.....+...+..-.+.|+-++|...+++.++.+|++.++...+...|... +.+.|..+-+.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 222334555566667789999999999999999999999998888876554 45566555443
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=169.35 Aligned_cols=261 Identities=16% Similarity=0.202 Sum_probs=181.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++ -..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4456666666666666666666666666666666666666666555 5556666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHH
Q 002286 281 TGQHFLVEQLTETALAVTNHG--------PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 352 (942)
.|.-..|...+..-+...+.. +.... ..........+..-.++|..+....+ ....+.++..||.+|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHH
Confidence 666666666666655322100 00000 00000111112233445555554322 125677899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
...|+|++|+.+|+.+|...|++...|..||-.+....+.++|+..|.+++++.|..+.+++++|..+ ..|.|.+|..+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 432 FKTARTLLKKAGEE-----VPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 432 ~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
|-.++.+.+..... .+..+|..|-.++...++.+.+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999998773221 123567666667777777664443
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=2.3e-16 Score=162.11 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhhcCC---C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+..+.++..+++++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455688888888886444 2 356799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
.|+++++++|++ ..++..+|.++...|++++|+..|+++++.+|+++.....+ .+....++ +.+|+..+.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422221 22334455 88888888776654
Q ss_pred C
Q 002286 264 Y 264 (942)
Q Consensus 264 ~ 264 (942)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=2.1e-16 Score=142.83 Aligned_cols=210 Identities=23% Similarity=0.255 Sum_probs=181.3
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 420 (942)
..+...||.-|+..|++..|...++++++.+|++..++..++.+|...|..+.|.+.|++++.++|++.+++++.|..+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3457788999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
.+|.+++|...|++++.. .....+...+.++|.|..+.|+++.|..+|++++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~---P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------ 167 (250)
T COG3063 115 AQGRPEEAMQQFERALAD---PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------ 167 (250)
T ss_pred hCCChHHHHHHHHHHHhC---CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH------------------------
Confidence 888999999998888763 22233567888899999999999999999999988
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
.+|..+.....++..+...|++..|..+++......+-..+.+.....+....|+-+.+-.
T Consensus 168 -------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 168 -------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred -------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 6677888888889999999999999998888888888778888888888888899888888
Q ss_pred HHHHHHhhcCCChhHHH
Q 002286 581 LVNEALKVNGKYPNALS 597 (942)
Q Consensus 581 ~~~~~l~~~p~~~~~~~ 597 (942)
+=.+.....|.+++.-.
T Consensus 229 Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 229 YQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhCCCcHHHHh
Confidence 88888888888776543
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=162.76 Aligned_cols=256 Identities=15% Similarity=0.214 Sum_probs=155.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
+..|..+++.|++.+|.-+|+.+++.+|.+..+|..+|.+....++-..|+..++++++++|++ ..+...+|.+|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-leaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-LEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-HHHHHHHHHHHhhhh
Confidence 4567777777777777777777777777777777777777777777777777777777777777 566677777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc------cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQAN------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
.-..|..++.+.+...|...... .+..-...+ +...+..-.+.|-.+....|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~--~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-------------------- 425 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLV--SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-------------------- 425 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhcc--ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 77777777777766665422110 000000000 00012222222333333333
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
. ..++++...||.+|+..|+|++|+.+|+.++. ..|.....|..||-.+....+..+|+..|
T Consensus 426 --------------~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 426 --------------T-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred --------------C-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 1 24456666666666666777777777776666 55666666777777776666777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHH-hcCCHhHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR----------DAQAFIDLGELL-ISSDTGAA 428 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~-~~~~~~~A 428 (942)
.+++++.|....+++++|.+++.+|.|++|..+|-.++.+.+. +..+|..|-.++ ..++.+-+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 7777777777777777777777777777777777766665432 123555555555 55555433
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=5.6e-16 Score=159.29 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=161.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 138 LLAKGEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
....+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCH
Confidence 3344677888888888886433 2 36678888888888888888888888888888888 67788888888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~ 293 (942)
++|+..|+++++++|++..++..+|.++...|+ +++|+..++++++.+|+++.....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-------------------- 171 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-------------------- 171 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH--------------------
Confidence 888888888888888888888888888888888 888888888888888877621111
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHH-----
Q 002286 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV----- 368 (942)
Q Consensus 294 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----- 368 (942)
.......+++++|+..|.+..... ++.. + ..+.+....|+...+ ..+..+
T Consensus 172 ------------------~~l~~~~~~~~~A~~~l~~~~~~~--~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 172 ------------------LYLAESKLDPKQAKENLKQRYEKL--DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred ------------------HHHHHccCCHHHHHHHHHHHHhhC--Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCC
Confidence 111233456666666665544321 1111 1 134444445554332 122222
Q ss_pred --HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Q 002286 369 --LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL 420 (942)
Q Consensus 369 --l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~ 420 (942)
.+..|...++++.+|.++...|++++|+.+|++++..+| +.+...+.+..+.
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 244556677888888888888888888888888888875 5555555554444
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.5e-16 Score=152.90 Aligned_cols=274 Identities=19% Similarity=0.203 Sum_probs=229.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++..|..|+..++.++...|.+...|..++..++..|+|++|....++.++.+|..+......+.++...++..+|...+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH------------HhC------CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 186 ~~~l------------~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+..- .+- |.+ ..+.+.-+.|+..+|++++|...--..+++++.+.++++..|.++...++
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 222 34456778899999999999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
.+.|+..|++++.++|+...+-... ..+.....+..-|.-.+..|++..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876443211 1133446777888999999999999999
Q ss_pred HHHHHHhcCCC-CCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 328 YMASVKEINKP-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 328 ~~~a~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
|..++...|.+ ..++..|.+++.+....|+..+|+..++.+++++|....++...|.|+..++++++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999843322 23345688899999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 002286 407 PR 408 (942)
Q Consensus 407 p~ 408 (942)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 55
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.3e-14 Score=134.76 Aligned_cols=301 Identities=20% Similarity=0.250 Sum_probs=242.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhhHhhHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGL 205 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~la~ 205 (942)
.-+..|.-++-..+.++|+..|-.+++.+|...++.+.+|.++.+.|..+.|+.+.+..+. .|+.+ ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3466788888999999999999999999999999999999999999999999999887765 55542 345678999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
-|...|-++.|...|....+...--..++..|..+|....+ +++|+...++..++.+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~--------------- 177 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV--------------- 177 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh---------------
Confidence 99999999999999999887655567788889999988888 999999999888887765422
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
.-+..|..++..+....+.+.|...+.++++ .+|..+.+-..+|.+....|+|+.|++.+
T Consensus 178 -----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 178 -----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred -----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHH
Confidence 1236677788888888999999999999998 77888999999999999999999999999
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC
Q 002286 366 EKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (942)
Q Consensus 366 ~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (942)
+.+++.+|+. +++...|..+|..+|+.++....+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-- 314 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT-- 314 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc--
Confidence 9999999986 5688899999999999999999999999887754 4445566655 556667777766665554332
Q ss_pred CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhh
Q 002286 444 EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALG 476 (942)
Q Consensus 444 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~ 476 (942)
....+.+...... .|...+.+..+..++.
T Consensus 315 ----~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ----MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ----HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444444444332 3446666777777665
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=8.6e-15 Score=155.25 Aligned_cols=256 Identities=23% Similarity=0.278 Sum_probs=199.1
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh-
Q 002286 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (942)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (942)
....|....+...++..|...|+|+.|+..++.+++... ..+........+|.+|...+++.+|+..|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344566667777788888888888888888888876421 12333344455889999999999999999999875
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHH-hcCCHhHHHHHHHHH
Q 002286 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (942)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (942)
+|....++.+||.+|...|++++|..++++++++. |.-...+..++.++ ..+++++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34446688899999999999999999999988763 44456677888888 999999999999999
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhc
Q 002286 436 RTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (942)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (942)
+++..+.....+ +.++.++|.++..+|++++|..+|++++.......
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------------ 401 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------------ 401 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------------------
Confidence 999875543333 47899999999999999999999999998531100
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
....+.....+.++|..+.+.+++.+|..+|.++..+ +|+....+.+|+.+|..+|+++.|+++...+
T Consensus 402 -----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 402 -----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred -----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0034456678889999999999999999999887763 3555778889999999999999999988887
Q ss_pred Hhh
Q 002286 586 LKV 588 (942)
Q Consensus 586 l~~ 588 (942)
+..
T Consensus 477 ~~~ 479 (508)
T KOG1840|consen 477 LNA 479 (508)
T ss_pred HHH
Confidence 743
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=1.7e-14 Score=153.03 Aligned_cols=254 Identities=25% Similarity=0.223 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 335 (942)
.|.-..+...++..|...|++++|+.+++.++.. ....+........+|.+|...+++.+|+.+|++++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666677777888888888888888888888864 12234555566679999999999999999999998743
Q ss_pred --CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
+.+|..+.++.+||.+|...|++.+|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3567777889999999999999999999999998763 334557888999999999999999999999876
Q ss_pred C--------cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 406 D--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 406 ~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
. |.-+..+.++|.+| ..|++.+|.+.+++++.+......... ...++++|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3 34467889999999 999999999999999999877654433 36788999999999999999999999
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
+...... .....|+....+.+|+.+|..+|+++.|+++...++.
T Consensus 435 ~~~i~~~------------------------------------~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKL------------------------------------CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHH------------------------------------hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9874310 0115677788999999999999999999999999885
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.7e-14 Score=136.75 Aligned_cols=296 Identities=20% Similarity=0.187 Sum_probs=216.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+..-+..+. .|+-+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~-spdlT~------------- 103 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLE-SPDLTF------------- 103 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhc-CCCCch-------------
Confidence 45556666677777777777777777777777777777777777 7777766655443 232221
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (942)
.....+...+|.-|...|-++.|...|....+ .+.....+.-.|..+|-...++++|+
T Consensus 104 -------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d---e~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 104 -------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD---EGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---chhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 12235677788888888888888888888774 23444556777888888888888888
Q ss_pred HHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHH
Q 002286 363 TNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (942)
Q Consensus 363 ~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (942)
+.-+++.+..+.. +..+..++..+....+.+.|...+.++++.+|+.+.+-+.+|.+. ..|+++.|++.++.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 8888888877654 446777888888888888999999999999999988888899988 8899999999888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCC
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (942)
+..+.. -+++...+..+|...|+.++.+..+.++....
T Consensus 242 eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-------------------------------------- 279 (389)
T COG2956 242 EQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-------------------------------------- 279 (389)
T ss_pred HhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------------------------------------
Confidence 775553 45788888999999999999999999988732
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 002286 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 586 (942)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~l 586 (942)
+ .+.+...++..-....-.+.|..++.+-+..+|+- ....++...... .|...+.+..+..++
T Consensus 280 -----~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -----T-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -----C-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 1 44555666777777777888888888889999986 344444444332 233455555555544
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.72 E-value=6.8e-14 Score=150.80 Aligned_cols=352 Identities=15% Similarity=0.142 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
.+++.....++...|++++|+.++.+... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 46677778899999999999999988665 34557788
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
.-..|.++..+|++++|...|..++..+|++...+..+..+..... +.+.-..+|++.....|....+...--.+
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 8899999999999999999999999999999998888888874332 56777888998888888765544332222
Q ss_pred hccccch-HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-----------
Q 002286 603 ELKNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----------- 670 (942)
Q Consensus 603 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------- 670 (942)
..-..+ ..+..++...+..+-+ .....+-.+ |....+ ..-...-+.-|...++.
T Consensus 121 -~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~L-y~d~~K---------~~~i~~l~~~~~~~l~~~~~~~~~~~~~ 186 (517)
T PF12569_consen 121 -LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPL-YKDPEK---------AAIIESLVEEYVNSLESNGSFSNGDDEE 186 (517)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHH-HcChhH---------HHHHHHHHHHHHHhhcccCCCCCccccc
Confidence 222223 3444455555555422 122222222 332200 01122222222222211
Q ss_pred --CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 671 --HTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 671 --~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
.|.. .|+++.+|..|...|++++|+.+++++++..| ..++.|+..|.++-..|++.+|.+.++.+-.. +.
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~ 259 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKARILKHAGDLKEAAEAMDEAREL--DL 259 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Ch
Confidence 1222 46789999999999999999999999999998 88999999999999999999999999999998 77
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~ 827 (942)
.|-.+....+..+.+.|+.++|.+.+....... .++....+-..|+++..+.. .+-....+...|...+....++|.
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a--~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECA--EAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999987754433 35444444444555544411 111113468888999999999999
Q ss_pred HHhhCCCCCCCCCcHHHHHHHHHH--H--HHHHHHHHHHHHHHH
Q 002286 828 HLSAASNLHLHGFDEKKINTHVEY--C--KHLLDAAKIHREAAE 867 (942)
Q Consensus 828 ~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 867 (942)
.+..+... +|.|+.++.+.|+-+ . .+-+...+..++.+.
T Consensus 337 ~~~~DQfD-FH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 337 DFEEDQFD-FHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHhccccc-HHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99887655 778888776655422 1 344444444444443
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.5e-16 Score=152.90 Aligned_cols=311 Identities=16% Similarity=0.132 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
-....|..++...+|.+|+..|..++...|++ ...|...+.++...|++++|.-..+..++++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 35667778888888888888888888888888 66678888888888888888888888888888887777777777777
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
.++ ..+|...++. ..++ ....
T Consensus 130 ~~~---~i~A~~~~~~--------~~~~------------------------------------------------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLKS--------KQAY------------------------------------------------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhhh--------hhhh------------------------------------------------HHhh
Confidence 766 5555555440 0000 1122
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 324 A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 403 (942)
|+..+++.+......|....+....+.++...|++++|...--.++++++.+.++++..|.++...++.+.|+..|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33333333322222344555667778999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhh
Q 002286 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (942)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 483 (942)
.++|+...+-..... ++ ..+.+..-|.-.++.|++..|.+.|..++...|.
T Consensus 231 ~ldpdh~~sk~~~~~---------------------~k-----~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM---------------------PK-----KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--- 281 (486)
T ss_pred ccChhhhhHHhHhhh---------------------HH-----HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---
Confidence 999987554321111 00 1345566688999999999999999999995441
Q ss_pred ccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002286 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (942)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (942)
....+...+.+.+.+...+|+..+|+...+.++.++|.+..++.
T Consensus 282 ------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 282 ------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred ------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 12236678899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 564 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
+.|.++...++|++|.+.|+++.+...+ .+....+.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999999999998765 55544443
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2.6e-15 Score=151.78 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+..+|..|...|+.. +|+..+++++..+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666555 777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
.++..+|.++...|++++|+..|++++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777777643 222 44566677777777777777777777777777777777777777
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~ 294 (942)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777 777777777777666666666656666666666666655555444
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=3.1e-15 Score=151.19 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=117.1
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
...++.+|.++...|++++|+..+++++..+|++..++..+|.++...|+ +++|+..+++++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666 666666666666666655555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
++...|++++|...+.+++... ..+.....+..+|.++...|++++|...+.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555544321 1123334555566666666666666666666665 23444455556666666666
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666655555566666666666666666666655554443
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.70 E-value=5e-14 Score=151.85 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=235.5
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 489 (942)
++......++ ..|++++|+..+........+ ...++...|.++..+|++++|...|...+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D-----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~------------- 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILD-----KLAVLEKRAELLLKLGRKEEAEKIYRELID------------- 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 3445555566 667777777766654443222 246666777788888888888888888877
Q ss_pred chhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-----CCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-----HDTVAASVLYRLILFKYQDYVDAYLR 564 (942)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (942)
.+|++...+..+..+.... .+.+.-..+|++.....|..... .+
T Consensus 67 ------------------------------rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~r 115 (517)
T PF12569_consen 67 ------------------------------RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RR 115 (517)
T ss_pred ------------------------------HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch-hH
Confidence 4566666666666665222 24566678888888888765222 22
Q ss_pred HHHHHHHcCChhH-HHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc----------------CCCCc
Q 002286 565 LAAIAKARNNLQL-SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA----------------TDGKD 627 (942)
Q Consensus 565 l~~~~~~~~~~~~-A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~ 627 (942)
+...+..-..+.. +..++...+.. .-|.++..+-.+|....+..-....+...... .|..-
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 2222222122322 33444444433 34556666666666444433333333333221 11111
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 707 (942)
.++++.++.. |-.. |++++|+++.++++...|..+..+...|.+|.+.|++.+|...++.++..++
T Consensus 194 lw~~~~lAqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~- 259 (517)
T PF12569_consen 194 LWTLYFLAQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL- 259 (517)
T ss_pred HHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-
Confidence 2455566666 6666 9999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-CC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 708 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+--+-...+..+++.|+.++|.+....--+...++ .+ .+.....|.+|.+.|++..|++.|..+.+.+
T Consensus 260 ----~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 260 ----ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ----hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455566667889999999999999965543332111 11 2334567999999999999999999999987
Q ss_pred CCC--hhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCCC
Q 002286 781 PSN--YTLRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAASN 834 (942)
Q Consensus 781 p~~--~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a---~~~l~~a~~~~~~l~~~~~ 834 (942)
-+. ..+-|| ..|+.++..++.-...+..+.+... +.-...|++++-.|.+.+.
T Consensus 336 ~~~~~DQfDFH-~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~ 393 (517)
T PF12569_consen 336 DDFEEDQFDFH-SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE 393 (517)
T ss_pred HHHhcccccHH-HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence 643 334444 4568888877766665555555544 6667889999999988763
No 87
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=7.4e-15 Score=149.62 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
++-.+-.++...+++++|+.+++.++...|. ...++...+.++..+|. ++.+|+..+++++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~---------~ytaW~~R~~iL~~L~~----------~l~eeL~~~~~~i 99 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG---------NYTVWHFRRLCLEALDA----------DLEEELDFAEDVA 99 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch---------hHHHHHHHHHHHHHcch----------hHHHHHHHHHHHH
Confidence 4444444466677778888888877776663 23455566666655542 2347778888888
Q ss_pred hcCCCCcchHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+.+|++..+|..++.++...|+. ++++.++++++..+|+|..+|..++.++...|+|++|+..+.++++.+|.+ ..+
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sA 178 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSA 178 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhH
Confidence 88888877888777777777763 667777778888888888888888888877788888888888888888777 666
Q ss_pred HhhHHHHHHHc---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH-HhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 200 RLGIGLCRYKL---GQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEA-AGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 200 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
|..++.++..+ |.+ +.++.+..+++..+|+|..+|..++.++...+.. ....+++..+.+++...|.++.++
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 77777777665 222 3566667777778888888877777777663221 124557777777777777777777
Q ss_pred HHHHHHHHh
Q 002286 272 NYLANHFFF 280 (942)
Q Consensus 272 ~~la~~~~~ 280 (942)
..|+.+|..
T Consensus 259 ~~l~d~~~~ 267 (320)
T PLN02789 259 SDLLDLLCE 267 (320)
T ss_pred HHHHHHHHh
Confidence 777777764
No 88
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=2.6e-14 Score=145.69 Aligned_cols=227 Identities=14% Similarity=-0.002 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYK 186 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~ 186 (942)
++|.+|..+|..++.. .+.+++|+..+.+++..+|.+..+|..++.++...| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~~-----------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYAS-----------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 4566777777666543 467889999999999999999999999999999998 6899999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
+++..+|++ ..+|...+.++..+|.. ++++..+.++++.+|+|..+|...+.++...|+ +++++..+.++++.+
T Consensus 97 ~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d 172 (320)
T PLN02789 97 DVAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHC
Confidence 999999999 67789999999888874 778999999999999999999999999999988 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 002286 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (942)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 344 (942)
|.+..+|+..+.++...+... . .....+.++.+..+++. ..|.+..+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~Sa 219 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESP 219 (320)
T ss_pred CCchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCH
Confidence 999988888876654432100 0 00112455666666665 45666677
Q ss_pred hhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 345 YYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 345 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
|..++.++.. .++..+|+..+..++...|.++.++..++.+|..
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7777777766 3455667777777777777777777777777765
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=2.2e-13 Score=146.78 Aligned_cols=312 Identities=17% Similarity=0.113 Sum_probs=203.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
||+.+.++..+|..+...|+++.|...+.++.+..|.+ .......+.++...|++++|+..+++++..+|++ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 78899999999999999999999988888888777654 4567778889999999999999999999999988 4433
Q ss_pred hhHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 201 ~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
.. +..+...|++. .+...+......+|....++..+|.++...|+ +++|+..+++++..+|+++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 33 55555555444 44444433335567777778888889999998 999999999999999999888888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh---cHHHHH
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~la~~~ 352 (942)
+++..|++++|+.++.+++...+..+. ....+..+|.++...|++++|+..|++++...+. ........ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999998888876543222 2345667888888888888888888887642111 11111111 112222
Q ss_pred HHcCChHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------cHHHHHHHHH
Q 002286 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGE 418 (942)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~ 418 (942)
...|....+... + .......|. ........+.++...|+.+.|...+..+...... ........+.
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 233322222222 1 111111111 1122234566666667777777776665442211 1233344444
Q ss_pred HH-hcCCHhHHHHHHHHHHHHHHH
Q 002286 419 LL-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
++ ..|+++.|+..+..++.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55 566666666666666555443
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=5.2e-13 Score=143.92 Aligned_cols=308 Identities=15% Similarity=0.069 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (942)
Q Consensus 82 ~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 158 (942)
-...+..++.+|...|... .|...+.++....|.+ ....+..|..+...|++++|...+++++..+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3557788888888888766 5677777776666644 4567788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
|++..++.. +..++..|++..+.....+++. .+|.. ......+|.++...|++++|...++++++.+|++..++
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 999987775 6666665555544444444443 34444 45566788999999999999999999999999999999
Q ss_pred HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH-HH
Q 002286 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YY 309 (942)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 309 (942)
..+|.++...|+ +++|+..+.+++...|.++ ..+..++.++...|++++|...++.++...+..+..... -.
T Consensus 152 ~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 152 HAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 999999999999 9999999999999887543 345679999999999999999999987543221211111 11
Q ss_pred -HHHHHHHhcCCHHHHHHH--HH-HHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC---------cH
Q 002286 310 -NLARSYHSKGDYEKAGLY--YM-ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (942)
Q Consensus 310 -~la~~~~~~g~~~~A~~~--~~-~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (942)
.+...+...|....+..+ .. ...... ..+.........+.++...|+.+.|...++.+...... ..
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 223333444433333332 11 111110 11222223345788888999999999999887654322 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
......+.++...|++++|+..+..++...
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 567788999999999999999999998653
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.5e-13 Score=125.24 Aligned_cols=423 Identities=15% Similarity=0.109 Sum_probs=258.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
+....+|..|++++..-....|.+...+..+|.||+...+|..|..+|++.-...|.. ...++..+..+++.+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHH
Confidence 4777889999999988888888888889999999999999999999999998888888 677888888999999999988
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 218 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.....+...+.-.......-+.+....++ +..+....+ .-| +........|.+.++.|+++.|.+-|+.++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 87776543211112223333444444455 444433333 334 455667777777777777777777777777
Q ss_pred hcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 002286 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (942)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (942)
+...-.| ..-++++.++++.|++..|+++....+... .+.|........-|.--...|+. +..-.. .
T Consensus 172 qvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S------a 239 (459)
T KOG4340|consen 172 QVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS------A 239 (459)
T ss_pred hhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH------H
Confidence 6654433 566777777777777777777777766532 12232211100000000001110 011111 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 452 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 452 (942)
-.++++..+.++.+.|+++.|.+.+..+--.. .-+|..+.+++..-..+++.....-+.-.+.+.| .+++++.
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-----fP~ETFA 314 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-----FPPETFA 314 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-----CChHHHH
Confidence 24567788889999999999988765442111 1246667777766577778777777776666533 4789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHH
Q 002286 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (942)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 532 (942)
++-.++++..-++.|...+.+--... ..- -....+++-
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------yk~-L~~Yly~LL 352 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------YKF-LTPYLYDLL 352 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------HHH-hhHHHHHHH
Confidence 99999999988888887775532210 000 111222222
Q ss_pred HH-HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccc
Q 002286 533 RL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (942)
Q Consensus 533 ~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 608 (942)
.. -...-..++|.+-+..+-....+-....-.-.......++ ...|++.|+..+++. ..+....+++|....+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED 429 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc
Confidence 22 2233455555555444332111110000000111111111 223455555555543 4467788999999999
Q ss_pred hHHHHHHHHHhhccCCCCchhH
Q 002286 609 WVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
+..+.+.|....+...+++.+-
T Consensus 430 y~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cHHHHHHHHHHHhhhcccceee
Confidence 9999999999888777666553
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=8.6e-13 Score=123.41 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++..|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.+.+|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
..+... |.-...+.-.-+.+.+..+++..+....++.- ..++.......|.+..+.|+ ++.|++-|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 876543 33333444556777788899988887766531 12567788899999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCc-------------------------hhHHHHHHHHHHHhcC
Q 002286 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSKG 319 (942)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-------------------------~~~~~~~la~~~~~~g 319 (942)
.++.+-+.++.+.++.|++..|+++...++...- .+|. ..+++...+.++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 9999999999999999999999999988874321 1111 1345667788888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 320 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+++.|.+.+..+--.. ...-.+..+.+++..- ..+++.+...-+.-++.++|--.+.+.++-.+|++..-++-|..++
T Consensus 256 n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 9888877765443211 1122233455555433 3466777777788888888877888888888888888888777665
Q ss_pred HHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 400 RKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 400 ~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
-. +|+. +..+..+-.+. .....++|.+-+.....
T Consensus 334 AE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 334 AE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 43 3332 12222222222 55566666665555443
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1.7e-13 Score=137.52 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=89.0
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-- 197 (942)
.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456678899999999999999999999999999998875 57789999999999999999999999999998743
Q ss_pred hhHhhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+++.+|.++... |++++|+..|++++..+|++..++
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 2577888888765 556666666666666666654443
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=2.6e-13 Score=136.16 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=153.9
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh--
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-- 594 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 594 (942)
..+..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999988764 57788999999999999999999999999988876
Q ss_pred -HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 595 -ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 595 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+++.+|.++... ++.. +... |++++|++.|++++..+|+
T Consensus 108 ~a~~~~g~~~~~~---------------------------~~~~-~~~~------------~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 108 YAYYLRGLSNYNQ---------------------------IDRV-DRDQ------------TAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHh---------------------------cccc-cCCH------------HHHHHHHHHHHHHHHHCCC
Confidence 577777776443 0111 2223 7888899999999998888
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (942)
+..+...+..+.. +.. ........+|.+++..|++.+|+..|+.++..+|+.+. +.+
T Consensus 148 ~~~~~~a~~~~~~--------------~~~--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 148 SEYAPDAKKRMDY--------------LRN--------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred ChhHHHHHHHHHH--------------HHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 8766543322211 000 11233457888889999999999999999998876544 788
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 753 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++.+|.++...|++++|..+++.+...+|+
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999988888777763
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.58 E-value=8e-10 Score=124.84 Aligned_cols=249 Identities=13% Similarity=0.105 Sum_probs=168.0
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---- 196 (942)
...+|.+..+|..++..+...|++++|+..++..+...|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3456889999999999999999999999999999999999999999999999999998888766 6666555441
Q ss_pred --------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 145566666776677777777777777777777777766666666666 5 6666666666655
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
. ++..++|..+..+..+.+... |.+.+.+..+ .++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhH
Confidence 4 444445555555555555432 2222222221 11111110 011122
Q ss_pred hhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Q 002286 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKA 402 (942)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~~ 402 (942)
..+.-+-..|...+++++++.++..+++.+|.|..+...++.+|... ..+..|+..|++.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 23344446777888888899999999888888888888888888743 2345566666666
Q ss_pred HHhCcCc
Q 002286 403 AKIDPRD 409 (942)
Q Consensus 403 l~~~p~~ 409 (942)
+..+|.+
T Consensus 304 i~f~~G~ 310 (906)
T PRK14720 304 IVFDTGN 310 (906)
T ss_pred eeecCCC
Confidence 6555544
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=7.3e-14 Score=125.83 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.5
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
..+|+++++.+|++ ++.+|..+...|++++|+..|+.++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47889999999874 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
++ +.+++.+|.|+..+|++++|+..|++++...|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888765543
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=5.6e-11 Score=117.18 Aligned_cols=296 Identities=18% Similarity=0.110 Sum_probs=182.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
-|..-+..|+|.+|.....+.-+..+....+++.-|...-++|+++.|-.++.++-+..+++.-.+.+..+......|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 34445556666666666666666665556666666666666677777666666666665554445566666666666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH---HHHHH--HHHhcCCHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL---NYLAN--HFFFTGQHFLVE 288 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~la~--~~~~~g~~~~a~ 288 (942)
+.|......+++..|.++.++.....+|...|+ +......+.+.-+..--+..-. -..+. ++-..++-..+.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 777766666666666666666666666666666 5555555555444322211111 00000 111111222222
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHH
Q 002286 289 QLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (942)
.+..--...+..-..++.....++.-+...|+.++|.+....+++..-+ +. ...-.-...-+++..=++..++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-----L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-----LCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-----HHHHHhhcCCCCchHHHHHHHHH
Confidence 2111111111111233466667777778888888888888888863211 11 11112234567778888888888
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
++..|+++..+..+|.++.+.+.+.+|..+|+.+++..| +...+..+|.++ ..|+...|...++.++...
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888776 455677788888 8888888888888877544
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=6.3e-13 Score=119.73 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=116.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
..+|+++++.+|++ +..+|.++...|++++|+..|++++...| .++.+|.++|.++...|++++|+..|+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999986 45689999999999999999999999998 88999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
+.. ++.++.+++.+|.++...|++++|+..|.+++...|+++..+.+.+.+..
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 998 67789999999999999999999999999999999999999999998743
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=7.4e-11 Score=116.36 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
.+++..-..-..+|.+...++.-+...|+.++|.+....+++..-++....++. .... ++...
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~-----~l~~------------~d~~~ 312 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP-----RLRP------------GDPEP 312 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh-----hcCC------------CCchH
Confidence 344444444455677777788888888888888888888887665433222211 1111 66777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (942)
=++..++.++.+|+++..+..||.++.+.+.+.+|...|+.++...| +...+..+|+++.++|+..+|.+.+++
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 77788888899999999999999999999999999999998888774 577888899999999999999999999
Q ss_pred HHhhhCCC
Q 002286 740 CLRKFYYN 747 (942)
Q Consensus 740 al~~~~~~ 747 (942)
++..+-.+
T Consensus 387 ~L~~~~~~ 394 (400)
T COG3071 387 ALLLTRQP 394 (400)
T ss_pred HHHHhcCC
Confidence 98765433
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=5.2e-12 Score=120.30 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--hHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~g~--~~~A~~~ 184 (942)
++.++++..+.++++.+|+++..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|...
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455555556666666666666666666666666666666666666666666666666665543 44444 3556666
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
++++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666655 4455556666666666666666666665555543
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.44 E-value=2.9e-12 Score=125.31 Aligned_cols=298 Identities=20% Similarity=0.199 Sum_probs=209.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhhhcHHH
Q 002286 275 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 275 a~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~la~ 350 (942)
|.-+++.|++.....+|+.+++....+ ...+.+|..+|.+|+..++|.+|+++-..-+. .+++......+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 455666667777777777766554222 23345677888888888888888887654332 22334444556677899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~ 404 (942)
++--.|.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887766432 135688999999987754 2344444444444
Q ss_pred hCcC------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 405 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+... ...++-++|..| ..|+|+.|+..-+.-+.+....++... ..++.++|.++.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 3221 234666777888 899999999999888888777665433 37889999999999999999999999887
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
...... .....+...|.+|..|.-..++++|+.++.+-+.+..
T Consensus 264 LAielg-------------------------------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIELG-------------------------------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHhc-------------------------------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532111 2233667889999999999999999999988776432
Q ss_pred ------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----CCC--hhHHHHhhhhhccccch
Q 002286 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKY--PNALSMLGDLELKNDDW 609 (942)
Q Consensus 557 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~----p~~--~~~~~~l~~~~~~~g~~ 609 (942)
....+++.||..+...|..++|+.+....++.. ... ..+..++.......|..
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 236788999999999999999999888776653 222 23455555555555543
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=6e-11 Score=109.23 Aligned_cols=209 Identities=17% Similarity=0.060 Sum_probs=173.1
Q ss_pred CCHhHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.+.++-++.....+...+.. -.+....++-.+..+....|..+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 45556666666665554443 1122235566667778889999999999999877
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
..|.+..+....|..+...|++++|+++|+.+++.+|.+...+-+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 34778888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+...++.++.++++|..++.+|...|++++|.-++++++-..|- .+.-+..++.+ ++..... .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGGA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhhH---------HHHHHHH
Confidence 99999999999999999999999999999999999999988887 45556678888 5544332 6889999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~ 685 (942)
++|.++++++|.+..+++++-.+-
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999999988874443
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=8e-12 Score=122.29 Aligned_cols=310 Identities=17% Similarity=0.198 Sum_probs=214.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----CCCchhhHhhH
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGI 203 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~l 203 (942)
.-|.-+++.|++...+.+|+.+++....+. ..|..+|..|+..++|.+|+++...-+.+. .-..+..--.+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 457788999999999999999999887763 456788999999999999998866544331 11112334568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhccHH----------hHHHHHHHHHHHHHhCCCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAA----------GIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~----------~~~~A~~~~~~~~~~~p~~ 267 (942)
|..+--+|.|++|+.+..+-+.+.. ....+++++|.+|...|+.- ...++...++.+.+....+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887665422 24567899999998877510 0112222222222211111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhh
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFP 344 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~ 344 (942)
......+ .+......++-++|..|+..|+|++|+.+-+.-+. .+++....-.+
T Consensus 182 L~l~~~l------------------------gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 182 LELSEKL------------------------GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred HHHHHHh------------------------hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 1111000 11122346778889999999999999988765543 33333344567
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PD--NCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQA 412 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~ 412 (942)
+.++|.+++-.|+++.|+++|...+.+. .. .+...+.+|..|.-..++++|+.++.+-+.+. -....+
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999999999876542 22 34577889999999999999999999877653 234678
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFES 466 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 466 (942)
+..+|..+ ..|..++|+.+.+..++.....++.. ......++...-...|..+.
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 88999999 99999999999999988877765544 23455556666555565443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.1e-09 Score=133.93 Aligned_cols=268 Identities=16% Similarity=0.114 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
..-..|..+...|.+.+|...+..+.... .-..++...++.....|... .+..++..+-
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~----------~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~lp 401 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ----------LLRDILLQHGWSLFNQGELS-----------LLEECLNALP 401 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH----------HHHHHHHHhHHHHHhcCChH-----------HHHHHHHhCC
Confidence 44555666777888888877776653321 12334455566665555544 3334433321
Q ss_pred h-cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 122 R-IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 122 ~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
. ....++......+.++...|++++|...+..+....+. .......++.++...|++++|...+++++..
T Consensus 402 ~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 402 WEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 0 11234455667777778888888888888777654221 1233445667777788888888888888775
Q ss_pred CCCCch----hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 192 HPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 192 ~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.|.... .....+|.++...|++++|...+++++...... ..++..++.++...|+ +..|...+.+++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKAF 558 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 444311 234557777777888888888888877653221 2234566677777777 777777777766
Q ss_pred HhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 262 EIYPY--------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (942)
Q Consensus 262 ~~~p~--------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (942)
..... ....+..++.+++..|++++|...+..++..... .......+..+|.++...|+++.|...+..+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54211 1122334555556666666666666555443211 1112334444555556666666666655555
Q ss_pred HH
Q 002286 332 VK 333 (942)
Q Consensus 332 ~~ 333 (942)
..
T Consensus 639 ~~ 640 (903)
T PRK04841 639 EN 640 (903)
T ss_pred HH
Confidence 43
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.42 E-value=9.5e-12 Score=140.08 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=180.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
..|.+..++..++..+...|++++|+...+..+..+|+....++.+|.++...+++.++..+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67888999999999999999999999999999999999999999999999999887776655 44444333
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
..++ .+..++-..+...+. ..++++.+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333333333333333 56689999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH------HHH
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA------QIL 753 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~ 753 (942)
++|..|... ++++|+.++.+++.. +...++|..+.+++++.+...|..-+. .+.
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~-------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR-------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH-------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 999999999999885 344557777777777777764333332 222
Q ss_pred HHHH------------HHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 754 LYLA------------RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 754 ~~l~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
..++ ..|...+++++++.+++.+++.+|.|.-+++.++.||..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3333 677778899999999999999999999999999999773
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=8.3e-11 Score=108.34 Aligned_cols=209 Identities=16% Similarity=0.086 Sum_probs=168.6
Q ss_pred HcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchH
Q 002286 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (942)
Q Consensus 52 ~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (942)
...+.++-.++.+.++...+...+.+ +.-.++-.+..+-+-.|+.. -|..++++.....|++..+.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~---e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV~ 89 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGD---EIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRVG 89 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCc---hHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhHH
Confidence 34455666666655543222110111 22223333344444445444 89999999888889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
...|..+-..|++++|+++|+..+..+|.|...+-..-.+...+|+-.+|++.+...++..+.+ ..+|..++.+|...|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999888888889999999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 275 (942)
+|++|.-++++++-..|.++..+..+|.++...|-..++.-|..+|.++++++|.+..+++.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 9999999999999999999999999999999888888899999999999999997777666543
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.2e-11 Score=113.69 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+...+-.....+|.+..+ ...+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4556666667778888888 888999999999999999998888888888888888889999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9998 78899999999999999999999999999999999999999999999998 8999999999888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
..++.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888888877765533
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=1.6e-09 Score=132.65 Aligned_cols=366 Identities=15% Similarity=0.086 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
++.+|+..+..+-.. +.-.......|..+...|++..+...+..+-. ....++......+.++...|++++|...+..
T Consensus 356 ~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 356 FPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344566555443111 11123344466777888988887777665411 1123344567778888999999999999998
Q ss_pred HHHhCCCC--------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhccHHhHHHHH
Q 002286 188 ALQVHPSC--------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 188 ~l~~~p~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
+....+.. ...+...+|.++...|+++.|...+++++...|... .+...+|.++...|+ +++|.
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~ 511 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARAL 511 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHH
Confidence 87653321 133445578888999999999999999998655432 345677888888999 99999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHHhcCCHHH
Q 002286 255 EKMQRAFEIYPYC------AMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 255 ~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~ 323 (942)
..+.+++...... ..++..++.++...|+++.|...+.+++...... +.....+..+|.++...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999998753321 2456778999999999999999999988643221 2233456678999999999999
Q ss_pred HHHHHHHHHHhcCC--CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHHcCCHHH
Q 002286 324 AGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEK 394 (942)
Q Consensus 324 A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~ 394 (942)
|...+.+++..... ......++..+|.++...|+++.|...+..+....+.. .... ......+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 99999998864321 12234556678999999999999999999997753321 1111 112344556789999
Q ss_pred HHHHHHHHHHhCcCcH----HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002286 395 AQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
|...+.......+... ..+..++.++ ..|++++|...+++++......+... ...++..+|.++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998877654322222 1245778888 99999999999999999876654432 2367888999999999999999
Q ss_pred HHHHHHhhcc
Q 002286 469 QSFKDALGDG 478 (942)
Q Consensus 469 ~~~~~al~~~ 478 (942)
..+.+++...
T Consensus 752 ~~L~~Al~la 761 (903)
T PRK04841 752 RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHh
Confidence 9999999854
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=1.4e-11 Score=117.38 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHhcC--HH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 731 (942)
++.++++..+++++..+|++..+|..+|.++...|++++|+..|++++...| +++.++.++|.++ ...|+ ++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999975 67787 59
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+|+..++++++. ++.++.+++.+|.+++..|++++|+.+|++++...|.+.
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999 667789999999999999999999999999999999764
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=2e-11 Score=129.01 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
.-..+|..+...|-...|+.++++. ..+.....+|...|+.. +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4478899999999999999999864 35667788999999766 7877777777
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 201 (942)
+ .|+++..|..+|.+....--|++|.++++.. +..+...+|...+..++|.++...++..++++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 7 7788999999999988888888888888765 34477778888888999999999999999999998 77899
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...++ -.+|...+.++++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 999999999999999999999999999999999999999999998 89999999999999988888887777777888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 002286 282 GQHFLVEQLTETALAVTN 299 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~ 299 (942)
|.+++|.+.+.+.+....
T Consensus 601 ge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred ccHHHHHHHHHHHHHhhh
Confidence 888888888887775543
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=1.4e-11 Score=111.40 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|.+++..+|.+....+.+|..++..|++++|...|+.++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
+ +..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77788999999999999999999999999999876643
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=1.1e-10 Score=109.17 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 002286 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (942)
Q Consensus 145 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (942)
..+...+-.....+|.+..+ ...+..+...|+-+.++.+..++...+|.+ ..+...+|...+..|++..|+..+.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666667777789999999 999999999999999999999999889988 6667779999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 002286 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (942)
Q Consensus 225 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 304 (942)
...|++..+|..+|.+|.+.|+ ++.|...|.+++++.|.++.+..+++..++-.|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999888654 445
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..+..+++.+....|+++.|.....+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6788889999999999998887765443
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.33 E-value=4.1e-07 Score=99.33 Aligned_cols=237 Identities=14% Similarity=0.064 Sum_probs=133.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHH
Q 002286 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (942)
Q Consensus 139 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (942)
+..+++.+|.....++++..|+...+....|.++++.|++++|..+++..-...+++ ....-.+-.||..+|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHHH
Confidence 445677778888888888888777777778888888888888886666655555554 5556667778888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 002286 219 AFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHFLVEQLTETALAV 297 (942)
Q Consensus 219 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~a~~~~~~~~~~ 297 (942)
+|++++..+|+ .+.+..+-..|.+.+. |.+-.+.--+..+..|.++..+.....+.+. ....+.
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~----------- 163 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE----------- 163 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc-----------
Confidence 88888888887 6666667777777666 4443333344445666665333222222211 111100
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH-HHHHhC-CCc
Q 002286 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE-KVLEIY-PDN 375 (942)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~-p~~ 375 (942)
.....+. .-|...+++.++..+.-....+ ....-.++...|++++|...+. ...+.. +.+
T Consensus 164 -----~~~~i~l------------~LA~~m~~~~l~~~gk~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~ 225 (932)
T KOG2053|consen 164 -----LLDPILL------------ALAEKMVQKLLEKKGKIESEAE-IILYLLILELQGKYQEALEFLAITLAEKLTSAN 225 (932)
T ss_pred -----cccchhH------------HHHHHHHHHHhccCCccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHhccccc
Confidence 0000111 1122333333331100000111 1112234455666777777662 233332 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
..........+...+++.+-.+...+++..++++
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 3444455556666677777777777777776665
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.33 E-value=1.4e-10 Score=130.57 Aligned_cols=156 Identities=14% Similarity=0.001 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
+++.-+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 44444555566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+|++ ...++.+|.++.++|++++|...|++++..+|++..++..+|.++...|+ .++|...|++++....+-...+
T Consensus 150 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 150 GSSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHH
Confidence 9999 78899999999999999999999999999999999999999999999999 9999999999999876655443
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=3e-11 Score=109.20 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=111.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
+.|++++..+|++..+...+|..+...|++++|+..|++++...| .++.++.++|.++..+|++++|+..|+.++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 742 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
.. .+.++..++.+|.++...|++++|+..|+++++..|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 98 566788999999999999999999999999999999886643
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=1.8e-10 Score=121.92 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
...-..++.++...|-..+|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 356667899999999999999999865 34
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 607 (942)
+-....+|...|+..+|..+..+-++ .|+++..|..+|.+.....-+++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 56678899999999999999999998 6666788888877776666666666666543 3447778888888899
Q ss_pred chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 002286 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (942)
Q Consensus 608 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (942)
++.++.+.|+..++++|- ...+++.+|-+ +.+. +++..|...|..++..+|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 999999999999999887 77889999988 8888 999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
.|+-.+|...++++++.+- .+..+|-|.-.+....|.+++|++.|.+.+..-....|+.++..+......
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999999999999999874 678999999999999999999999999998865555567777666655443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=7e-07 Score=95.90 Aligned_cols=549 Identities=13% Similarity=0.094 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH--------HH---hCCCCHHHHHHHHHHHHhc
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV--------LE---ADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~--------l~---~~p~~~~~~~~~a~~~~~~ 175 (942)
.|+.+.|.+...-+ .+..+|-++|....+..+.+-|.-++-.+ ++ .+|+ ..-...|.+....
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHH
Confidence 35555555544432 12346777777777777777666555322 11 1222 2223334455566
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~ 255 (942)
|-.++|+.+|.+.-+. -.+-..|...|.+++|.+.-+.-=.+. -...++..+..+...+| .+.|++
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D---i~~Ale 879 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD---IEAALE 879 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc---HHHHHH
Confidence 6666666666665331 223445555666666665544311111 12345555655556666 666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 002286 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (942)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 335 (942)
+|+++-.. . . .+.....++..+++.|-+- ..+...|.+.|..+...|+.+.|+.+|..+..
T Consensus 880 yyEK~~~h--a-f-------ev~rmL~e~p~~~e~Yv~~-------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 880 YYEKAGVH--A-F-------EVFRMLKEYPKQIEQYVRR-------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHhcCCh--H-H-------HHHHHHHhChHHHHHHHHh-------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 66653110 0 0 0111111222222222111 22346788889999999999999999988864
Q ss_pred CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c--
Q 002286 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------P-- 407 (942)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p-- 407 (942)
|+.+..+..-+|+.++|....++ ..+..+.+.+|..|...|++.+|+..|.++-... .
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66667777778888888776554 4567788899999999999999999888765432 1
Q ss_pred CcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 408 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
+..+-+.+++..-...+.-.|..+|+..--. ...-..+|.+.|.+.+|++.--+...-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~------------~~~AVmLYHkAGm~~kALelAF~tqQf---------- 1064 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGY------------AHKAVMLYHKAGMIGKALELAFRTQQF---------- 1064 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchh------------hhHHHHHHHhhcchHHHHHHHHhhccc----------
Confidence 1111122222221233444444444432111 111233455666666665543222110
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH------HHhC------
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI------LFKY------ 555 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------l~~~------ 555 (942)
..+.-....+ ....++.++..-+..+....+|++|..++-.+ +.+.
T Consensus 1065 ---------------------~aL~lIa~DL-d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~ 1122 (1416)
T KOG3617|consen 1065 ---------------------SALDLIAKDL-DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR 1122 (1416)
T ss_pred ---------------------HHHHHHHHhc-CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 0000000000 23346778888888899989999988766543 3211
Q ss_pred ----------CC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----------c-----------CCChhH
Q 002286 556 ----------QD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKV----------N-----------GKYPNA 595 (942)
Q Consensus 556 ----------p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----------~-----------p~~~~~ 595 (942)
|. ....+..+|.++.++|.|..|-+-|.++=.. . ....++
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi 1202 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI 1202 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee
Confidence 10 0345566677777777777766665543110 0 001111
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (942)
|. ++.-|++.-+|..--+.++.+...+.+. .++-.|++. |-..+..+-- .-.+|++|.-.++.+
T Consensus 1203 YI-mAANyLQtlDWq~~pq~mK~I~tFYTKg--qafd~LanF-Y~~cAqiEie----e~q~ydKa~gAl~eA-------- 1266 (1416)
T KOG3617|consen 1203 YI-MAANYLQTLDWQDNPQTMKDIETFYTKG--QAFDHLANF-YKSCAQIEIE----ELQTYDKAMGALEEA-------- 1266 (1416)
T ss_pred ee-ehhhhhhhcccccChHHHhhhHhhhhcc--hhHHHHHHH-HHHHHHhhHH----HHhhhhHHhHHHHHH--------
Confidence 11 2222233333333333333333322221 122234444 3333111000 002222222222111
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (942)
+.++.+...-..+...+....+.. ....+.+..-.++. .+..+.|...+.++..- .-++ ..
T Consensus 1267 ------~kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~lleep-~ld~~Ir~~~ 1331 (1416)
T KOG3617|consen 1267 ------AKCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTLLEEP-ILDDIIRCTR 1331 (1416)
T ss_pred ------HHHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhCc-CCCCcchhHH
Confidence 112221111112222222222211 01112222222232 36677777777777652 2222 56
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
++-.|...+....+|..|-..++.+....|+-.
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 778888999999999999999999999999643
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=9.7e-11 Score=102.19 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=99.5
Q ss_pred hhcC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 121 SRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 121 ~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
..++ ++.-+..+..|..++..|++++|...|+.+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|++ +.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chH
Confidence 3455 66778899999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
++..|.|++..|+.+.|+..|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998763
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=4.5e-10 Score=126.48 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
+..-+.-...-+.|....+...|-+++.-. ..|+ ....++..||.+...+|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYV--RRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHH--Hhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 344555556666777777776666654321 1122 34678889999998888887 999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
+...|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988888 8889
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
..+|.++...|+.++|...|++++....+-...
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999987655444
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.9e-10 Score=116.13 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=169.1
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--CCChhHHHHhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 600 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~ 600 (942)
......+.+.+++..+|++...+.-... ..+....+...++..+...++.+.++..++..+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566778889999999988765543322 223333555556655555456666666665544332 23445666677
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++...|++++|+..+.+. ...........+ |+.. ++++.|.+.++.+-+.+.+.+.....
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888899999998887653 134444445556 7777 88999999999998888888877777
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 002286 681 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 758 (942)
Q Consensus 681 la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~ 758 (942)
.+++....| .+.+|.-+|+.+.+..+ .++.++..+|.++..+|+|++|.+.+++++.. ++.++.++.+++-
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 788877766 68999999999877665 67888888999999999999999999999887 5667889999999
Q ss_pred HHHHcccH-HHHHHHHHHHHHhCCCChhhH
Q 002286 759 THYEAEQW-QDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 759 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 787 (942)
+....|+. +.+.+++.++...+|++|-+.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999988 667778888888899876544
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.22 E-value=3.6e-06 Score=92.29 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.++|.+|+....+.++..|+.+.+....|.++++.|+.++|..+++..-...+++...+-.+-.+|...|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46788999999999999999999999999999999999999988888777788888889999999999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++..+|+ ....+.+=.+|.+.+.|.+-.+.--+..+..|+++-.+.....+.+.
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 99999999 45677788899999998887777777777889887765555444443
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=110.56 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+-..|.-+++.++|.+|+..|.++|.++|+|+..|-.+|.+|.+.|.|+.|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 33455666666666666666666666666666666666666666666666666666666666666 55566666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666666666555555544444433
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=5.6e-09 Score=102.89 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=125.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~ 200 (942)
.++..++..|..++..|++++|+..|+.++...|..+.+ .+.+|.++++.++|++|+..+++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678888999999999999999999999998887654 48888999999999999999999999988873 4556
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+.+|.++..++.- .+......++. ..|.....+|+..|++.++..|++.-+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777775544311 11111111111 11122255677777777777776652211
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
|...+..+. .....--+..|..|...|.|..|+.-++.+++..+..+....+++.++..|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111110000 00112233556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 002286 361 ALTNFEK 367 (942)
Q Consensus 361 A~~~~~~ 367 (942)
|......
T Consensus 231 a~~~~~~ 237 (243)
T PRK10866 231 ADKVAKI 237 (243)
T ss_pred HHHHHHH
Confidence 6555443
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=2.9e-10 Score=114.78 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
+.......++...++++.|.+.++.+.+ .+++........+.+.+..| .+.+|...|+.+....+.++..+..++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4444445555555555555555555443 22333333333333333333 355555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCH
Q 002286 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (942)
.++..+|++++|...+.+++..+|+++.++.+++.+. ..|+.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666655555555555555555555 55544
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=5e-09 Score=103.22 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTW---VGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYS 179 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~---~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~ 179 (942)
..|+|++|+..|++++...|..+.+. +.+|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...+.
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~-- 121 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD-- 121 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch--
Confidence 46899999999999999999886554 8899999999999999999999999999874 567777776544421
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhhccHHhHHHHHHH
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEK 256 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~A~~~ 256 (942)
..+......++.. .......+|+..|++.++..|++.-+- ..+..+....
T Consensus 122 ---~~~~~~~~~~~~~------------rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------------ 174 (243)
T PRK10866 122 ---SALQGFFGVDRSD------------RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------------ 174 (243)
T ss_pred ---hhhhhccCCCccc------------cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------------
Confidence 1222222222111 112234578899999999999875432 1122111111
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..--...|..|+..|.|..|+.-++.++...+..+...++++.++.+|...|..++|........
T Consensus 175 -----------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -----------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11223568889999999999999999999998999999999999999999999999988776543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=5e-09 Score=106.73 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
|....++++.|..++..|.+++|+..++..+...|++ +..+...+.++...|+.++|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 6677778888888888888888888888888888877 666777788888888888888888888888888777788888
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 318 (942)
..++..|+ +.+|+..+.+.+..+|+++..|..|+..|...|+..+ .....+..+...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~--------------------a~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE--------------------ALLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH--------------------HHHHHHHHHHhC
Confidence 88888887 7788888888888888888888888888777776543 333445566677
Q ss_pred CCHHHHHHHHHHHHHh
Q 002286 319 GDYEKAGLYYMASVKE 334 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~ 334 (942)
|++++|+..+..+.+.
T Consensus 439 G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 439 GRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777764
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=2.3e-09 Score=109.14 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=142.3
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|....+++..+..++..|.+++|+..++..+...|+|+..+...+.+++..++..+|++.+++++..+|.. ..+++.+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~ 380 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNL 380 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHH
Confidence 367788999999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|..+.+.|++.+|+..+.+.+..+|+++..|..|+..|..+|+ ..+ +....+..++..|+
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~-----------------a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAE-----------------ALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHH-----------------HHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998 333 34455677888999
Q ss_pred HHHHHHHHHHHHhcC
Q 002286 284 HFLVEQLTETALAVT 298 (942)
Q Consensus 284 ~~~a~~~~~~~~~~~ 298 (942)
++.|+..+..+.+..
T Consensus 441 ~~~A~~~l~~A~~~~ 455 (484)
T COG4783 441 LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888654
No 128
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.6e-10 Score=107.74 Aligned_cols=121 Identities=20% Similarity=0.263 Sum_probs=105.4
Q ss_pred HHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (942)
Q Consensus 89 l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 168 (942)
++.-.-..|... .+.++|.+|+..|++|+.++|.++..|..+|.+|.+.|.++.|++.++.++.++|....+|..+
T Consensus 80 ~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 80 LAESLKNEGNKL----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 344444444433 5688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHH
Q 002286 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 169 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 214 (942)
|.+++.+|++.+|+..|+++|.++|++ ..++-.+..+-..++...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999 666666666666555544
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=3.6e-09 Score=102.03 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
.+..++..|..+...|++.+|+..|+.++...|.. ..+.+.+|.++...|++..|+..+++.+...|+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 44556666666666666666666666666666554 4556666666666666666666666666666655431
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++++.+|.. ++....... ....+.+...+|+..|+..+...|++.++-
T Consensus 79 ---------------------------~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 79 ---------------------------DYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp ---------------------------HHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred ---------------------------hhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 1233333333 222211110 000111778899999999999999876654
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHHHHH
Q 002286 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 759 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~ 759 (942)
+|...+..+.+. ...--+.+|..|++.|.+..|+.-|+.+++.||+++. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~--------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNR--------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHH--------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344444444432 2445567899999999999999999999999988777 7899999999
Q ss_pred HHHcccHHHHHH
Q 002286 760 HYEAEQWQDCKK 771 (942)
Q Consensus 760 ~~~~g~~~~A~~ 771 (942)
|.+.|..+.|..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 999999885543
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.6e-06 Score=93.28 Aligned_cols=439 Identities=14% Similarity=0.093 Sum_probs=256.0
Q ss_pred hHHHHHHHhccCChHHHHHHH--HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhh
Q 002286 27 SDILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (942)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~a--~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~ 104 (942)
.-|.+++..+.++....-.+- ..|...|+.|.|.+-+.-+-+. .+|..++....+..+.+-.+
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk- 777 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK- 777 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-
Confidence 557777778888776553332 2355679999998887765332 25555555555444333110
Q ss_pred hhHHHHHH--HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 002286 105 EKEEHFIL--ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (942)
Q Consensus 105 ~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~ 182 (942)
.--|+... ....+.++.+ +|. ..-...|.+....|..++|..+|++.-+.+ .+-..|...|.+++|.
T Consensus 778 VClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~ 846 (1416)
T KOG3617|consen 778 VCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAF 846 (1416)
T ss_pred HhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHH
Confidence 01122222 2344455543 333 344556788899999999999999876543 4456678889999998
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
++.+.-=++. ....++..+.-+...++.+.|+++|+++-. | -.++...| .+ +..+++.|-+
T Consensus 847 eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~--h-afev~rmL-------~e---~p~~~e~Yv~--- 907 (1416)
T KOG3617|consen 847 EIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGV--H-AFEVFRML-------KE---YPKQIEQYVR--- 907 (1416)
T ss_pred HHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCC--h-HHHHHHHH-------Hh---ChHHHHHHHH---
Confidence 8765432222 244678889989999999999999998521 1 11111111 11 3334444322
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
...++..|.+.|..+...|+.+.|+.+|..+ .-|+.+.++.+-+|+.++|-.+-++. ...
T Consensus 908 -~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----------~D~fs~VrI~C~qGk~~kAa~iA~es--------gd~ 967 (1416)
T KOG3617|consen 908 -RKRDESLYSWWGQYLESVGEMDAALSFYSSA-----------KDYFSMVRIKCIQGKTDKAARIAEES--------GDK 967 (1416)
T ss_pred -hccchHHHHHHHHHHhcccchHHHHHHHHHh-----------hhhhhheeeEeeccCchHHHHHHHhc--------ccH
Confidence 2245577888888888999999999988876 44677788888888888887766543 334
Q ss_pred hhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHH
Q 002286 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFI 414 (942)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~ 414 (942)
-+.+.+|..|...|++.+|+..|.++-.. ...| +.--.|+.+....| +.-.|..+|+..- .+ ..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~d~v~aArYyEe~g----~~---~~ 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGSDLVSAARYYEELG----GY---AH 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCchhHHHHHHHHHHcc----hh---hh
Confidence 55777888888888888888888776432 1111 01111222222222 3333444444321 00 01
Q ss_pred HHHHHH-hcCCHhHHHHHHHH-----HHHH-HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 415 DLGELL-ISSDTGAALDAFKT-----ARTL-LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~-----a~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
.-..+| ..|-+.+|++..-. ++++ ..+.....++.++..-+..+....+|++|..++-.+........+-.+.
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112234 55555555544321 2222 2333455678999999999999999999998876654421100000000
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCC-CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (942)
...-...+.++.-..+... .......++..+|.+..++|.|..|.+-|.++
T Consensus 1120 -------------nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 -------------NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -------------CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 0000111111111111100 11124557888999999999999999888765
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.12 E-value=1.2e-09 Score=95.55 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred HhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 156 ~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
..+ ++.....+.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445 6677888889999999999999999999999999988 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
+.+|.+++..|+ ...|...|+.++....
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence 999999999988 8888888888887753
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.12 E-value=1.3e-08 Score=98.16 Aligned_cols=187 Identities=19% Similarity=0.268 Sum_probs=106.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..++..|..++..|+|.+|+..|+.++...|.+ +.+.+.+|.+++..|+|..|+..+++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35667777888888888888888888887777654 46777777888888888888888888887777763 34556
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.+++... ...+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~---------~~~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQI---------PGIL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHH---------HHHH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhC---------ccch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 6666655441 0000 1112223378899999999999998873321
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (942)
|...+..+. .....--+.+|..|...|.+..|+..++.+++.++..+....++..++.++...|..+
T Consensus 129 -----A~~~l~~l~------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 129 -----AKKRLAELR------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 111111111 0111333445666666666666666666666655555555555555666666665555
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.09 E-value=1.3e-05 Score=82.88 Aligned_cols=416 Identities=11% Similarity=0.032 Sum_probs=220.1
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
++-++.+|.|..+|+.+..-+..+ .+++....|++.+...|..+.+|.......+..++|+....+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998888777 99999999999999999999999999999999999999999999998754332 2
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHH----HHh---hCCCCHHHHHHHHHHHHhh---cc---HHhHHHHHHHHHHHHHhC
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQR----ALQ---LDPENVEALVALAVMDLQA---NE---AAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~----al~---~~p~~~~~~~~l~~~~~~~---~~---~~~~~~A~~~~~~~~~~~ 264 (942)
-+...+-.+....|+...+....-+ ++. .++.....|...+..+..- |. ...++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2223334444444554444333333 322 3455555565555444322 11 011333444455544332
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCC
Q 002286 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPH 339 (942)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~ 339 (942)
-.+.. .|. +|..-+.-.+.+. ..-.+-.....|..|...+++...... ..|
T Consensus 168 m~nlEkLW~----------DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWK----------DYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHH----------HHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 22211 111 1111111111100 000111122234444444444432111 011
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
..+.... .+--.+.+.....++....|+-- ...|. ...-.-.+++++..-+-.+.+|+..+
T Consensus 224 ~vp~~~T---------~~e~~qv~~W~n~I~wEksNpL~--------t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 224 AVPPKGT---------KDEIQQVELWKNWIKWEKSNPLR--------TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred CCCCCCC---------hHHHHHHHHHHHHHHHHhcCCcc--------cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1000000 00001112222222221111000 00000 00111223333333344444444443
Q ss_pred HHH-hc-------CC-------HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhcch
Q 002286 418 ELL-IS-------SD-------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---GEFESAHQSFKDALGDGI 479 (942)
Q Consensus 418 ~~~-~~-------~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~ 479 (942)
..+ .. |+ .+++..+|++++...... +..+++.++..--.. ...+....++.+++...
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~- 361 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE- 361 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-
Confidence 333 22 22 456666666666544331 122222222221111 12444555555555521
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (942)
..+-..++..+...-.+..-...|..+|.++-+..-...
T Consensus 362 -----------------------------------------~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 362 -----------------------------------------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred -----------------------------------------ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 112233455555555566667888888888876443333
Q ss_pred HHHHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 560 DAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 560 ~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
.++..-|.+ |...++..-|...|+-.++..+++|..-..+...+...++-..|...|++++..
T Consensus 401 hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 401 HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 455544444 556789999999999999999999998888899999999999999999999886
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=2.3e-09 Score=112.86 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.++..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999988 77788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
|++++|+..|+++++++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777664443
No 135
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=6.8e-07 Score=90.51 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=116.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-----PIEVLNNIG 455 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~l~ 455 (942)
....+.++.+...+..-.+.+.....+.+.+....+..+ ..|++.+|.+.+...-- ....+... .-..++++|
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcc
Confidence 334456666777777777777777778888888888888 89999998887654321 11112111 224679999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc-chhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGD-GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
.++++.|.|.-+..+|.+++.. +... ..+ +.....-.-.....-.++|+.|..
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL--~~g------------------------~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQL--RNG------------------------LKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHH--hcc------------------------CCCCcceehhcccchhhHHhhhHH
Confidence 9999999999999999999962 1100 000 000000000233467799999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 571 (942)
|...|++-.|.++|.++....-.++..|++++.+...
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988654
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=7.8e-09 Score=91.09 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~ 202 (942)
+..++..|..+...|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+..|+.++...|+.+ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999988876 56889999999999999999999999999988863 456888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+|.++...|++++|...+.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998776543
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.01 E-value=6.8e-08 Score=93.81 Aligned_cols=305 Identities=15% Similarity=0.108 Sum_probs=197.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhhhcHHHHHHH
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~ 354 (942)
++...++++++....+.+...++.......+-.+..+...+|.|++++.+--..+... .+......++.+++..+..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444443332223333444455566666777776665544333211 1222334567777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hc
Q 002286 355 LGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-IS 422 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~ 422 (942)
..++.+++.+....+...... ..+...++..+..++.++++++.|+++++...++ ..++..++.++ ..
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 778888877777666542221 2466678888888888999999999888764332 35678888888 88
Q ss_pred CCHhHHHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhh
Q 002286 423 SDTGAALDAFKTARTLLKKAG-EEVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (942)
.|+++|+-+..++.++....+ .+.+ ..+++.++..+...|....|.++.+++.+.....+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--------------- 240 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--------------- 240 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC---------------
Confidence 999999999999888877654 2222 35778899999999999999999999987532111
Q ss_pred hhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH
Q 002286 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKA 571 (942)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~ 571 (942)
..+........+|.+|...|+.+.|..-|+.+......- ..++...+.++..
T Consensus 241 ----------------------dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 241 ----------------------DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred ----------------------ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 334466777889999999999999999999988643321 3444444544433
Q ss_pred cC-----ChhHHHHHHHHHHhhcCCC------hhHHHHhhhhhccccchHHHHHHHHHh
Q 002286 572 RN-----NLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 572 ~~-----~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.. ..-.|++.-.+++++...- ...+..++.+|...|.-++-...+.++
T Consensus 299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 22 2234777777776654322 225566777777777666555555543
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.01 E-value=2.6e-07 Score=89.81 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=171.2
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhccHHhHHHHHHHHHHHH----HhCCC--CHHHH
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA---VMDLQANEAAGIRKGMEKMQRAF----EIYPY--CAMAL 271 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~---~~~~~~~~~~~~~~A~~~~~~~~----~~~p~--~~~~~ 271 (942)
+..|.-++...++++|+..|.+.+..-.+...-+..+| .+....|. |++++..--..+ ..+.. .-.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~---y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGR---YKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666665554333222233333 22333333 444443322222 21111 12566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---CCchhhhh
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP---HEFIFPYY 346 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~ 346 (942)
..++..+....++.+++.+....+..+...+ .-......+|.++..++.++++++.|+.+.+..... .-...++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 7777777777888888888887776655544 234667779999999999999999999998743222 22235678
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDA 410 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~ 410 (942)
.+|..+....++++|+.+..++.++... ..-+++.++..+...|..-.|.++.+++.++. |...
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999876322 13467889999999999999999999988763 4456
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHF 459 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~ 459 (942)
.....+|.+| ..|+.+.|..-|+.+.......++... .+++...+.++.
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 6778899999 999999999999999988766543321 244444444443
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=1e-05 Score=86.11 Aligned_cols=328 Identities=13% Similarity=0.130 Sum_probs=164.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHH
Q 002286 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVP 163 (942)
Q Consensus 104 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------------~~p~~~~ 163 (942)
...+|+|+.|...++. +...|+....|..++.+.+..|+.--|..+|..+-. ...+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 3457899999987765 466788888899999999999988888777754321 1223344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
.+-..|.+....++|.+|..+|-. .+... -.+| .|..+.++++|+..-+- .-.|.........-..+..
T Consensus 533 fykvra~lail~kkfk~ae~ifle---qn~te-----~aig-my~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l~d 601 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLE---QNATE-----EAIG-MYQELHKWDEAIALAEA--KGHPALEKLKRSYLQALMD 601 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh---cccHH-----HHHH-HHHHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHHh
Confidence 555566666666667776665522 11111 1122 34455566666554331 1122211111111122222
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hcCCCCCchhHHHHHHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL---------AVTNHGPTKSHSYYNLARS 314 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~~~~~~~la~~ 314 (942)
.|. -++|-+ +...+...+ .-..+|...|.+.+|......-. ......-...+.|-..|.+
T Consensus 602 t~q---d~ka~e-------lk~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdl 670 (1636)
T KOG3616|consen 602 TGQ---DEKAAE-------LKESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDL 670 (1636)
T ss_pred cCc---hhhhhh-------hccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhH
Confidence 222 111111 111111111 11223444444443332221100 0000001123445555666
Q ss_pred HHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002286 315 YHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (942)
Q Consensus 315 ~~~~g~~~~A~~~~~~a~------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (942)
+....++++|+++|++.- + .+.-+...+..--..|.-+...|+++.|+..|-.+-. +..-....
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaa 742 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAA 742 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHH
Confidence 666667777777765432 1 1111112222233456667777888888777755421 11222233
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (942)
.....+.+|+..++.+-.... ....|-.++.-| ..|+++.|.+.|.++- ....-...|-+.|++.
T Consensus 743 i~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHH
Confidence 445667777777765543321 223345566777 7888888877776542 2233345677778888
Q ss_pred HHHHHHHHHhh
Q 002286 466 SAHQSFKDALG 476 (942)
Q Consensus 466 ~A~~~~~~al~ 476 (942)
.|.+.-.+...
T Consensus 809 da~kla~e~~~ 819 (1636)
T KOG3616|consen 809 DAFKLAEECHG 819 (1636)
T ss_pred HHHHHHHHhcC
Confidence 88777766643
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=3e-08 Score=89.13 Aligned_cols=129 Identities=25% Similarity=0.224 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+|...++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56666677777777777655 7778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
+-.+....|..++--|+|.-|...+.+.-+.+|++|-.+ ..-.+-...-++.+|...+.+
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~--LWLYl~E~k~dP~~A~tnL~q 191 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS--LWLYLNEQKLDPKQAKTNLKQ 191 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH--HHHHHHHhhCCHHHHHHHHHH
Confidence 888888888888888888888888888888888874221 111111223456666654443
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1e-08 Score=99.05 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~ 186 (942)
.+..+.-++.-+..+|+|+..|..+|.+|+..|+++.|...|.+++++.|+|+..+.++|.+++... .-.++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455566666666677777777777777777777777777777777777777777777776665542 3456666667
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+++..+|.+ ..+++.+|..++..|++.+|...|+..+...|.+
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 777777666 5556666677777777777777777766666544
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=9.3e-09 Score=90.62 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 754 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 754 (942)
.+++.+|..+...|++++|+..|.+++...|++. ..+.+++.+|.++...|+++.|+..|+.++..+|.++. +.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4678899999999999999999999999887432 23678999999999999999999999999999877654 78999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCChhh
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 786 (942)
.+|.++...|++++|...+.+++..+|+++.+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 99999999999999999999999999988653
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=2.4e-08 Score=89.70 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=135.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34677888999999999999999999999999999999999999999999999999999999999999 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a 287 (942)
+--|++.-|.+.+.+-.+.||+++---..+-...... + ..+|...+.+-..........++..... .|... .
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-d---P~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS-~ 215 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-D---PKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKIS-E 215 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-C---HHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhhcc-H
Confidence 9999999999999999999999875433222222222 2 5666554443333322222222222111 12111 1
Q ss_pred HHHHHHHHhcCCCCC----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 288 EQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 288 ~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..+++++.....++. ...++++.+|..+...|+.++|...|+-++.
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 223333332221111 1235666677777777777777777666664
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.97 E-value=1.3e-08 Score=107.28 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+...|..++..|+|.+|+..|.+++..+|++ ..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
|+ +++|+..|++++.++|+++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666443
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=6.1e-05 Score=78.03 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhhcCCChh-HHHHhhhhhccccchHHHHHH
Q 002286 541 TVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 615 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 615 (942)
.+++..+|+.++..-- .+...++.++..-...- ..+.....+++++.....++. ++..+.+.-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 6777788887776332 23344444444332222 366777888888887765554 566677776777778899999
Q ss_pred HHHhhccCCC-CchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHH
Q 002286 616 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (942)
Q Consensus 616 ~~~~~~~~~~-~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (942)
|.++-+..-. ++.++..++-. |..+ ++..-|..+|+--++..++.+..-+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999876543 35555544443 5555 8899999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
..+|++++...- + ......+|..+-..-..-|+...++++=++-...||
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999720 0 014567888888888888999999998888877776
No 146
>PRK15331 chaperone protein SicA; Provisional
Probab=98.95 E-value=1.4e-08 Score=89.12 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.6
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+..+.++.-+..+..|.-++..|++++|..+|+-..-.+|.++..|+++|.++..+|+|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455566677889999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.+..|.|+..+|+.+.|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 88899999999999999999999998 4553
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=1.1e-08 Score=97.72 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
.+..|.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|+.|...|..+.+.+|.++. |+.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566777788899999999999999999998854 6899999999999999999999999999999998887 8999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987654
No 148
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=7.2e-05 Score=76.32 Aligned_cols=424 Identities=13% Similarity=0.103 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCc--hhhHhhHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----
Q 002286 163 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 230 (942)
Q Consensus 163 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 230 (942)
.+++++|..+...| +...++++++..+...|.+. +..++.+|.+++ ...+++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666666666666 67777777777766666552 233455555443 3567777777777776542 222
Q ss_pred HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH
Q 002286 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306 (942)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 306 (942)
.++...|+.++....+ .+..+...+++++++....| ...+.|+..+....++..|..++.--.... ++ ...
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA--d~-~~~ 162 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA--DH-ICF 162 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc--ch-hhh
Confidence 2345566666666552 26666677777777665554 233444555555555555555432211100 00 000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc---CChHHHHHHHHHHHHhCCCcH-------
Q 002286 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIYPDNC------- 376 (942)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~------- 376 (942)
.|+.+... ...+.++... .+...+...+..+.+....++
T Consensus 163 ~ylr~~ft-------------------------------ls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 163 PYLRMLFT-------------------------------LSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHHHHHHH-------------------------------HHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 11111000 0011111111 122233333333333221111
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHh----Cc----------------------C-cHHHHHHHHHHH---hcCCH
Q 002286 377 ETLKALGHI-YVQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISSDT 425 (942)
Q Consensus 377 ~~~~~la~~-~~~~g~~~~A~~~~~~~l~~----~p----------------------~-~~~~~~~la~~~---~~~~~ 425 (942)
..+..+-.+ |...|+...+...+++.-.. .+ + ...++..+..+. ..|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 122233333 33446665555555443221 11 1 111222222222 45667
Q ss_pred hHHHHHHHHHHHHHHHcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (942)
++|.++-++++....+..... . ...+..+..+-.-.|++.+|+.....+.+-..+...
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~------------- 358 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT------------- 358 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc-------------
Confidence 888888888887765543322 1 244556677778889999999999888764321000
Q ss_pred hhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcC
Q 002286 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKARN 573 (942)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~l~~~~~~~~ 573 (942)
+.+ .....+.+.+.+|......|.++.|...|..+.+.-.. + +.+-.+++.+|...|
T Consensus 359 --------~~L------------lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~ 418 (629)
T KOG2300|consen 359 --------PLL------------LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIG 418 (629)
T ss_pred --------hHH------------HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhc
Confidence 000 11235667788888888899999999999998875433 2 456677888999988
Q ss_pred ChhHHHHHHHHHHhhcCCC----------hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh-----HHHhhhhHH
Q 002286 574 NLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWN 638 (942)
Q Consensus 574 ~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~ 638 (942)
+-+.-.+.++. +.|.+ ..+++..|...+..+++.+|...+.+.++.....|.. .+..+|++
T Consensus 419 ~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v- 494 (629)
T KOG2300|consen 419 DAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV- 494 (629)
T ss_pred cHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH-
Confidence 76655444443 44543 2367778888889999999999999999877544432 44456666
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 002286 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (942)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (942)
+... |+..++.+...-++++.
T Consensus 495 ~lsl------------gn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 495 FLSL------------GNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHh------------cchHHHHhccchHHHHH
Confidence 6666 77777777776666543
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=2.1e-08 Score=99.29 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HH
Q 002286 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (942)
Q Consensus 674 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 751 (942)
+....+..|..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++++|+..|+.+++.||+++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345556666655 5679999999999999999996532 3789999999999999999999999999999988766 99
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
+++.+|.++...|++++|+.+|+++++.+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998864
No 150
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.92 E-value=3.6e-07 Score=86.44 Aligned_cols=200 Identities=16% Similarity=0.194 Sum_probs=144.4
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH---H
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 596 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~ 596 (942)
..+..+++-|....+.|++++|...|+.+...+|.. ..+.+.++..+.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356678888888888888888888888888888765 5577778888888888888888888888888877663 3
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
+..|.+ ++.......++ ......|+..|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333 11111111110 14566788889999999999877
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHH
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 755 (942)
+-.... -+..+... ...--..+|+.|.+.|.+..|+.-++.+++.+++.+. ..++..
T Consensus 152 a~dA~~--------------~i~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKA--------------RIVKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHH--------------HHHHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 654322 22222221 2334456789999999999999999999999887766 789999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+..+|+..|-.++|.+.-.-+-...|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999887766666666665
No 151
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=5.6e-07 Score=102.48 Aligned_cols=230 Identities=15% Similarity=0.190 Sum_probs=189.3
Q ss_pred EEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 002286 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (942)
Q Consensus 16 ~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 95 (942)
++|++.-|++++|+..++.+.|...-.|+..-......+..++|+++.++++..-. |. +..++..+|..+-.+-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN---~R-EeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN---FR-EEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC---cc-hhHHHHHHHHHHHhHHHh
Confidence 45667789999999999999999999999999999999999999999999987521 22 222566666665555555
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 96 ~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 175 (942)
.|--+ .-.+.|++|.+.. +....+..+..+|...+++++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 55333 5567888887654 23456778889999999999999999999998888889999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
.+-+.|..++.+++..-|.. ...+.-..|..-++.|+.+.++..|+..+..+|.-.+.|..+...-...|+ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999998883 134455678888899999999999999999999999999999999999888 88888
Q ss_pred HHHHHHHHhC
Q 002286 255 EKMQRAFEIY 264 (942)
Q Consensus 255 ~~~~~~~~~~ 264 (942)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 8999988764
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7e-08 Score=93.35 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHH
Q 002286 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 257 (942)
.+.-+.-++.-+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|++++.+..+|.++..+.+.....++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344444555556666666 4446666666666666666666666666666666666666666666555544455666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 298 (942)
++++..+|.+..+.+.||..++..|+|.+|...++.++...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666543
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.86 E-value=1.6e-07 Score=96.82 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=120.1
Q ss_pred CCCCc---chH----HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc---------CChHHH
Q 002286 124 DMHEP---STW----VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDS 181 (942)
Q Consensus 124 ~p~~~---~~~----~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~~a~~~~~~---------g~~~~A 181 (942)
-|.+. .+| +.+|...+..+. .+.|..+|.+++ ..+|....++-.+|.|++.. .+..+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 35555 555 778888877774 567888999999 88999999999999988765 245678
Q ss_pred HHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 182 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.....++++++|.+ +.++..+|.+++..|+++.|...|++++.++|+.+.+++..|.+....|+ .++|+..+++++
T Consensus 324 ~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~al 399 (458)
T PRK11906 324 LELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHh
Confidence 88888999999998 77788899999999999999999999999999999999999999999998 999999999999
Q ss_pred HhCCCCHHHH
Q 002286 262 EIYPYCAMAL 271 (942)
Q Consensus 262 ~~~p~~~~~~ 271 (942)
+++|....+-
T Consensus 400 rLsP~~~~~~ 409 (458)
T PRK11906 400 QLEPRRRKAV 409 (458)
T ss_pred ccCchhhHHH
Confidence 9998765443
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=1e-08 Score=79.41 Aligned_cols=66 Identities=26% Similarity=0.533 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p 193 (942)
+..|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++...| ++.+|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455566666666666666666666666666666666666666666665 46666666666666555
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=8.8e-08 Score=90.06 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=98.4
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 201 (942)
|.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 3456678899999999999999999999999876653 4688999999999999999999999999999988 66788
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 267 (942)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8899999999877777666655421 677888888888888776
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=3.9e-08 Score=82.93 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
+++.+|..+...|++++|+..|..+++..|.+..++..+|.++...|++++|+..+++++...|.+ ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888888877 4667788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 002286 210 LGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (942)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.83 E-value=7.9e-09 Score=83.54 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (942)
+|+++.|+..|++++..+|. +...++.+|.++++.|+|++|+.++++ ...+|.+ ...++.+|.|+..+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777777664 345566667777777777777777776 5555655 4455566777777777777777
Q ss_pred HHHHH
Q 002286 219 AFQRA 223 (942)
Q Consensus 219 ~~~~a 223 (942)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=1.3e-07 Score=93.78 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=90.3
Q ss_pred cchHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHh
Q 002286 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~ 201 (942)
...++..|..+ +..|+|++|+..|+.+++..|++ +.+++.+|.+++..|++++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777776 56789999999999999999987 5789999999999999999999999999888876 366778
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+|.++..+|++++|...|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999876543
No 159
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=0.00028 Score=72.19 Aligned_cols=474 Identities=14% Similarity=0.073 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
.++..++..+...+ +.++..++++++..+...|.+. ..+.....+
T Consensus 8 ~aLlGlAe~~rt~~-PPkIkk~IkClqA~~~~~is~~----------------------------------veart~LqL 52 (629)
T KOG2300|consen 8 EALLGLAEHFRTSG-PPKIKKCIKCLQAIFQFQISFL----------------------------------VEARTHLQL 52 (629)
T ss_pred HHHHHHHHHHhhcC-ChhHHHHHHHHHHHhccCChHH----------------------------------HHHHHHHHH
Confidence 34555555555554 2236677777766666555432 122334445
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHhcCCCCCc----hhhhhcHHHHHHHcC-ChHHHHHHHHHHHHhCCCcH----HHHHH
Q 002286 312 ARS-YHSKGDYEKAGLYYMASVKEINKPHEF----IFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYPDNC----ETLKA 381 (942)
Q Consensus 312 a~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~~~~~ 381 (942)
|.+ +....+++.|...++++......-|.+ ..+...++.+|.... .+..+...+.++++.....+ ..++.
T Consensus 53 g~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQ 132 (629)
T KOG2300|consen 53 GALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQ 132 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 443 344566777777777776544333433 233455667776666 67777777777777655443 35566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cC---cHHHHHHH--HHHH-hcCCHhHHHHHHHHHHHHHHHcC-CCCCH----H
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKID-PR---DAQAFIDL--GELL-ISSDTGAALDAFKTARTLLKKAG-EEVPI----E 449 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~l--a~~~-~~~~~~~A~~~~~~a~~~~~~~~-~~~~~----~ 449 (942)
++.++.-..++..|++.+.-..... |. ...+.+.+ +.++ ...+..+.......+-.+..... ++... .
T Consensus 133 Laql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lkv 212 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKV 212 (629)
T ss_pred HHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 7777777778877777743222111 11 11222222 2233 33344444444444444433321 11111 2
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCc-chhH
Q 002286 450 VLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-KVTV 527 (942)
Q Consensus 450 ~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 527 (942)
.+..+-. .|...|+...+...+++........+ ...... +...+....+..+. .-|. ..-+
T Consensus 213 Fyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis---t~~~~h----~e~ilgsps~~l~~----------wlpkeqica 275 (629)
T KOG2300|consen 213 FYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS---TSSRGH----DEKILGSPSPILFE----------WLPKEQICA 275 (629)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC---CCCCCc----cccccCCCChHHHh----------hccHhhhHh
Confidence 2223333 34566887777777665433210000 000000 00000000000000 0011 1111
Q ss_pred HHHH--HHHHhhcCCHHHHHHHHHHHHHhC------CCcHH--------HHHHHHHHHHHcCChhHHHHHHHHHHhhc--
Q 002286 528 LFNL--ARLLEQIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (942)
Q Consensus 528 ~~~l--a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-- 589 (942)
+..+ ..--.-.|-+++|.++-++++... |.... .+-.++.+-.-.|++.+|++.+..+....
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r 355 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTR 355 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 1111 111123466777887777776532 11112 22334445556899999998888777654
Q ss_pred -CC-------ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHH--HhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 590 -GK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT--LSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 590 -p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
|. .+.+...+|......+-++.|...|..+.+.....+..+. ..++.. |... ++-+.
T Consensus 356 ~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~ed 422 (629)
T KOG2300|consen 356 FPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAED 422 (629)
T ss_pred CCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHHH
Confidence 43 2346677888888889999999999999998766565443 345556 7766 43333
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhc
Q 002286 660 AKELYTRVIVQHTSNL----------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQG 728 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~----------~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g 728 (942)
-.+..+ .+.|.|. .+++..|.....++++.+|...+.+.++......+ .-....+.-+|++..-.|
T Consensus 423 ~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 423 LYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred HHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhc
Confidence 222222 3344421 23455677777899999999999999887621111 113445677899999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCCHHHH----HHHHHHHHHccc--HHHHHHHH
Q 002286 729 NFALAMKMYQNCLRKFYYNTDAQIL----LYLARTHYEAEQ--WQDCKKSL 773 (942)
Q Consensus 729 ~~~~A~~~~~~al~~~~~~~~~~~~----~~l~~~~~~~g~--~~~A~~~~ 773 (942)
+..++.+...-++......+|..+. ..+-.++...|+ .+...+.+
T Consensus 500 n~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred chHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999999999888876666772222 233445555665 44444444
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.81 E-value=2.3e-08 Score=77.46 Aligned_cols=67 Identities=19% Similarity=0.496 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCC
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE-QWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 781 (942)
++.+|..+|.+++..|++++|+..|+++++. ++.++.+++.+|.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999998 6677999999999999999 79999999999999998
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=98.81 E-value=3.9e-07 Score=93.98 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHh---hcCCCCcchHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (942)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 176 (942)
....|+.+|.+++ .++|....++..++.+++.. ....+|....++++..+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5568999999999 99999999999999888766 24568899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHH-HHHhhccHHhHHHHH
Q 002286 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LAV-MDLQANEAAGIRKGM 254 (942)
Q Consensus 177 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~-~~~~~~~~~~~~~A~ 254 (942)
+++.|+..|++++.++|+. +.+++..|......|+.++|...++++++++|.-..+-.. +.. .|...+ .++|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999986555332 222 455444 67787
Q ss_pred HHHHHHH
Q 002286 255 EKMQRAF 261 (942)
Q Consensus 255 ~~~~~~~ 261 (942)
..|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7775543
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.80 E-value=1.8e-07 Score=85.00 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=81.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHhhHHHHHHHcCCHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~~~~~~g~~~ 214 (942)
..|+...+...++.+++.+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. .+.+++.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677777777777777777776 4566777777777777777777777777766544 2345667777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 215 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+|+..++. +...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 77777755 22333445566677777777777 77777777665
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=1.4e-07 Score=85.66 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.++...+...++.+....+..+....+.+.+|.+++..|++++|...|+.++...+++.....+.+.++.+++..|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555566666655555555556666777777777777777777777776332222234456667777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 402 (942)
|+..++.+ ...+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777553 223344556667777777777777777777665
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.78 E-value=1.8e-06 Score=81.74 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=124.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..|+..|...+..|++++|+..|+.+....|.+ ..+.+.++.++++.++|+.|+...++.+.+.|+++ +.+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35788999999999999999999999999998865 57889999999999999999999999999999874 34455
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
..|.+++.. ++ ....|......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~---------------i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQ---------------ID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhcc---------------CC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 555552211 10 001122236677777788888888765332111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
..+...+ +.--..+|+.|...|.+-.|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 0111111 122344566666666666666666666665555555555566666666666666665
Q ss_pred HHHHHH
Q 002286 362 LTNFEK 367 (942)
Q Consensus 362 ~~~~~~ 367 (942)
...-.-
T Consensus 224 ~~~~~v 229 (254)
T COG4105 224 KKTAKV 229 (254)
T ss_pred HHHHHH
Confidence 554333
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.78 E-value=2e-08 Score=76.58 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.7e-06 Score=77.75 Aligned_cols=251 Identities=14% Similarity=0.056 Sum_probs=156.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 002286 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 392 (942)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 392 (942)
+-++..|+|..++..-.+... .+........+...|+..|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 344556666666665555432 22444445556667777776655444333221 12234445555555555555
Q ss_pred HHHHHHHHHHHHh-CcC-cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 393 EKAQELLRKAAKI-DPR-DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 393 ~~A~~~~~~~l~~-~p~-~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
+.-+..+...+.. ... +......-+.++ ..|++++|+........ .++...-..++.+..+.+-|..
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443322 222 223333444555 78888888877766322 3344444567777888888888
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAAS 545 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 545 (942)
.++++.+. ++..++..+|..+.. .+...+|.
T Consensus 159 ~lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 159 ELKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88887662 133444555555443 34677888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHH-HHhhccCC
Q 002286 546 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATD 624 (942)
Q Consensus 546 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~ 624 (942)
-+|++.-...|..+......+.+...+|++++|...++.++..++++|+++.++..+-...|...++..-+ .+....+|
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 88888888788888888888888889999999999999999999999998888888888888776655544 34444455
Q ss_pred C
Q 002286 625 G 625 (942)
Q Consensus 625 ~ 625 (942)
.
T Consensus 274 ~ 274 (299)
T KOG3081|consen 274 E 274 (299)
T ss_pred c
Confidence 5
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.77 E-value=4.5e-07 Score=99.51 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=115.5
Q ss_pred CCCCcch--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHH
Q 002286 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (942)
Q Consensus 124 ~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~~l~ 190 (942)
-|.++.+ ++.+|..++..++ ...|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555544 4667888877765 789999999999999999999998888776542 23455555666555
Q ss_pred h--CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
. +|.. +.++..+|......|++++|...+++++.++| +..++..+|.++...|+ +++|+..|++++.++|.++
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788888888899999999999999999999 58899999999999999 9999999999999999988
Q ss_pred H
Q 002286 269 M 269 (942)
Q Consensus 269 ~ 269 (942)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=2.6e-07 Score=94.59 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=108.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c-CcHHHHHHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYP--D----NCETLKALGHIYVQLGQIEKAQELLRKAAKID-----P-RDAQAFIDLGE 418 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p-~~~~~~~~la~ 418 (942)
.|...|++++|..+|.++....- + -...+...+.+|.+. ++++|+.+|++++.+. | .-...+..+|.
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444555555555554433210 0 122344445555444 7777777777777652 1 12556778899
Q ss_pred HH-hc-CCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhh
Q 002286 419 LL-IS-SDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (942)
Q Consensus 419 ~~-~~-~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 495 (942)
+| .. |+++.|+.+|+++...+...+.... ..++..+|.++...|+|++|+..|++..........
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l------------ 190 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL------------ 190 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc------------
Confidence 99 76 8999999999999999988664322 377889999999999999999999998874210000
Q ss_pred hhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
........++..+.++...|++..|...++.....+|..
T Consensus 191 ------------------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 191 ------------------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp ------------------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ------------------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 011122345566778888889988988888888888755
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=1.7e-07 Score=88.12 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=81.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (942)
+.....++.+|..+...|++++|+.+|++++...+..+....+++.+|.++...|++++|+..+.+++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44556788888888888888888888888886443334445678888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCcCc
Q 002286 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (942)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~~~~~l~~~p~~ 409 (942)
+|.++...|+. .+|..++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888888773 44555555555555554
No 170
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=0.00057 Score=73.26 Aligned_cols=425 Identities=16% Similarity=0.127 Sum_probs=213.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 353 (942)
.|..+...|+++.|+..|-.+. .......+......+.+|+..+..... .......|-.+++-|.
T Consensus 712 wg~hl~~~~q~daainhfiea~-----------~~~kaieaai~akew~kai~ildniqd----qk~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN-----------CLIKAIEAAIGAKEWKKAISILDNIQD----QKTASGYYGEIADHYA 776 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh-----------hHHHHHHHHhhhhhhhhhHhHHHHhhh----hccccccchHHHHHhc
Confidence 3556666677776666554432 122223344455667777776665542 1222233445778888
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH-hcCCHhHHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
..|+|+.|.++|.++- ....-...|.+.|+++.|...-.+.. .|.. ...|+..+.-+ ..|++.+|...
T Consensus 777 n~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 8889988888887652 22334556778888888877766653 3333 33444455544 55555555444
Q ss_pred -------------HHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchh
Q 002286 432 -------------FKT------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492 (942)
Q Consensus 432 -------------~~~------a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 492 (942)
|.+ ++++..+.....-.+....+|.-+...|+...|...|-++-+-......
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnm--------- 917 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNM--------- 917 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHH---------
Confidence 332 2222222222223466677788888889998888888776441100000
Q ss_pred hhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (942)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 572 (942)
+++..+.+..-...+ ...-..+.-..+.++.+.=--+.|..++.+. ..+..-.......
T Consensus 918 ---------yk~s~lw~dayriak----tegg~n~~k~v~flwaksiggdaavkllnk~--------gll~~~id~a~d~ 976 (1636)
T KOG3616|consen 918 ---------YKASELWEDAYRIAK----TEGGANAEKHVAFLWAKSIGGDAAVKLLNKH--------GLLEAAIDFAADN 976 (1636)
T ss_pred ---------hhhhhhHHHHHHHHh----ccccccHHHHHHHHHHHhhCcHHHHHHHHhh--------hhHHHHhhhhhcc
Confidence 000000000000000 0000000000011111100011222222110 0000111123345
Q ss_pred CChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhH
Q 002286 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 652 (942)
Q Consensus 573 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~ 652 (942)
+-++-|..+.+-+.+ ..-++++..++..+...|+++.|-+.|-.+++++.-+-. +++..-..-.....
T Consensus 977 ~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit----------wcqavpsrfd~e~i 1044 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT----------WCQAVPSRFDAEFI 1044 (1636)
T ss_pred cchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch----------hhhcccchhhHHHH
Confidence 555556555544433 345778888999999999999999999999987643211 22221000000001
Q ss_pred HHH-HHHHHHHHHH---------HHHhc-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 002286 653 EAT-HLEKAKELYT---------RVIVQ-HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (942)
Q Consensus 653 ~~~-~~~~A~~~~~---------~~l~~-~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (942)
+.| ..+.|...|- ++.+. +|+ -+..+.+-+.--.+.|++-+|..++-++.. |++-.+
T Consensus 1045 r~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrank----------p~i~l~- 1113 (1636)
T KOG3616|consen 1045 RAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANK----------PDIALN- 1113 (1636)
T ss_pred HcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCC----------CchHHH-
Confidence 113 5667776662 22222 222 234455666666677888888777655522 222211
Q ss_pred HHHHHHhcCHHHHHHHH---------------HH-HHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 721 AHVYFAQGNFALAMKMY---------------QN-CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 721 a~~~~~~g~~~~A~~~~---------------~~-al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+...+-+..|+... ++ ++++ ....+..+..-++-|...|+|..|...+-++-...
T Consensus 1114 --yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~--gargvd~fvaqak~weq~gd~rkav~~~lkinrds 1185 (1636)
T KOG3616|consen 1114 --YFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKK--GARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDS 1185 (1636)
T ss_pred --HHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHhcccHHHHHHHHhhhccCC
Confidence 123334444444332 22 2222 22336677788899999999999999887754443
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.3e-06 Score=78.56 Aligned_cols=161 Identities=13% Similarity=0.172 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHH
Q 002286 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640 (942)
Q Consensus 561 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~ 640 (942)
....-+.++...|++++|+..... -.+.++...-..++.++.+.+-|...++++.+... ..++..|+.. |.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide---d~tLtQLA~a-wv 180 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE---DATLTQLAQA-WV 180 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---HHHHHHHHHH-HH
Confidence 344445556677777777766655 23445555556666677777777777777666542 2344445555 55
Q ss_pred HHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 002286 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (942)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (942)
..+... +.+..|.-+|+..-...|..+...++.+.+...+|++++|..+++.+++..+ .+|+++.|+
T Consensus 181 ~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nl 247 (299)
T KOG3081|consen 181 KLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANL 247 (299)
T ss_pred HHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHH
Confidence 543322 4566666677766666666666677777777777777777777777776665 566677777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhh
Q 002286 721 AHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 721 a~~~~~~g~~~~A~~~~~~al~~ 743 (942)
..+-...|...++..-+-.-++.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666666666555554444
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.75 E-value=3.3e-07 Score=100.51 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=120.0
Q ss_pred hccCChHHH--HHHHHHHHHcCC---HHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHH
Q 002286 35 AEQAPLDLW--LIIAREYFKQGK---VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEH 109 (942)
Q Consensus 35 ~~~~~~~~~--~~~a~~y~~~g~---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~ 109 (942)
..+.++++| +..|..|+.++. ...|+.+|++++..+|+. ..++..++.+|........ ..+.+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---------a~a~A~la~~~~~~~~~~~---~~~~~ 399 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---------TYAQAEKALADIVRHSQQP---LDEKQ 399 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHHhcCC---ccHHH
Confidence 344555655 777888887766 889999999999998843 4466667777755543331 22345
Q ss_pred HHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 110 FILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 110 ~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
...+.....+++.. +|.++.++..+|..+...|++++|...|++++.++| +..++..+|.++...|++++|+..|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777776664 777888899999999999999999999999999999 588999999999999999999999999
Q ss_pred HHHhCCCCchh
Q 002286 188 ALQVHPSCPGA 198 (942)
Q Consensus 188 ~l~~~p~~~~~ 198 (942)
++.++|..+..
T Consensus 479 A~~L~P~~pt~ 489 (517)
T PRK10153 479 AFNLRPGENTL 489 (517)
T ss_pred HHhcCCCCchH
Confidence 99999998543
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=1.4e-07 Score=88.40 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 002286 110 FILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
|..+...+...++.++.+ ...++..|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334555555554444443 4566778888888888888888888887776542 34777888888888888888888
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
|++++..+|.. ...+..+|.++...|
T Consensus 95 ~~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 88888887777 555667777777333
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.75 E-value=1.2e-08 Score=82.42 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
.++|+.|+..|++++..+|. +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.+++..|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35788999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 002286 185 YKRA 188 (942)
Q Consensus 185 ~~~~ 188 (942)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9874
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-07 Score=94.01 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhh-hhhh-----HHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YADV-----RYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~ 114 (942)
...-..|..||+.|+|..|...|++++..-.... ++.+ ..-+..++..|+.+|++++... +|+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai 277 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAI 277 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHH
Confidence 3456788999999999999999999765321110 1110 1123344455555555444333 566
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHh
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A-~~~~~~~l~~ 191 (942)
...++++..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .+.|.+++..
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666666666666666666666666666655555555555444444333 4555555544
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=4e-07 Score=93.17 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHhcCCHhHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAAL 429 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~A~ 429 (942)
.++++|...|.++ |.+|...|++++|...|.++.... ......+...+.++...++++|+
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai 94 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3677777777766 556677788888888888776543 11245666777788555999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhh
Q 002286 430 DAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (942)
.+|++++.++...|.... ..++..+|.+|... |++++|+.+|++++.......
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~------------------------- 149 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG------------------------- 149 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------------------
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------
Confidence 999999999887765433 47899999999999 999999999999998432100
Q ss_pred hhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCChhHHHH
Q 002286 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
........+..+|.++...|++++|++.|+++....-++ ...++..+.+++..||+..|..
T Consensus 150 ------------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 150 ------------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ------------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111235677889999999999999999999998754322 2345677788999999999999
Q ss_pred HHHHHHhhcCCChh-----HHHHhhhhhcc--ccchHHHHHHHHHhhcc
Q 002286 581 LVNEALKVNGKYPN-----ALSMLGDLELK--NDDWVKAKETFRAASDA 622 (942)
Q Consensus 581 ~~~~~l~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 622 (942)
.+++....+|.... +...+..++-. ...+..++..|..+..+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 99999999886543 33333444322 23466777777765544
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=4.1e-07 Score=78.28 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (942)
.+..++.-|.-....|+|.+|++.|+.+....|.+.+ .+.+.+.+|.+|+..|++++|+..+++-++++|.+++ +.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4566788888999999999999999999999997754 4688999999999999999999999999999998888 889
Q ss_pred HHHHHHHHHHccc---------------HHHHHHHHHHHHHhCCCChh
Q 002286 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 753 ~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 785 (942)
++..|.+++.... ...|...|++++..+|++.-
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9999999999876 78899999999999998854
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=3.8e-07 Score=85.52 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=86.1
Q ss_pred HHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC--
Q 002286 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (942)
Q Consensus 50 y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 127 (942)
+|-.+.+..+...+...+..... .....++..+|.++...|..+ +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSG-------EKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCCch-------hHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 34445566666667665543221 145677888888888888766 9999999999887653
Q ss_pred -cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (942)
Q Consensus 128 -~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 176 (942)
+.++..+|.++...|++++|+..|++++..+|.....+..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999888443
No 179
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=0.00011 Score=74.95 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~--~---~p----------~~~~~~~~~a~~~ 172 (942)
.|+.-++.+...-.++..+...++..+.+ +++.|.... ...++.... . .| .+....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35577777777777766665555666544 555554422 222222111 1 11 2345678888899
Q ss_pred HhcCChHHHHHHHHHHHHhC----CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh------CCC--CH---------
Q 002286 173 FNRGRYSDSLEFYKRALQVH----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPE--NV--------- 231 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~--~~--------- 231 (942)
+....+..|++........- ......+-+..-..+....+-++|+.++.-.-++ .|. +.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 99999999988776655432 1112223344444555556666666554332221 010 00
Q ss_pred ----------------HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 232 ----------------~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.+.......++.... ..-+..-...+.....+.+.++...+..++..|++.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122222222 4455555555666667888999999999999999999999887643
Q ss_pred hc-CCC---CCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------C---------CCCCchhhhhcHHHHHHH
Q 002286 296 AV-TNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI------N---------KPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 296 ~~-~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~---------~~~~~~~~~~~la~~~~~ 354 (942)
-. ... .|. ...+|.++|.++++.|.|.-+..+|.++++.. + .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 11 111 121 23457899999999999999999999998511 0 112344568899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
.|++-.|.++|.++...+-.+|..|..++.|...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874
No 180
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=5e-06 Score=95.03 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 253 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
..+.|++.+..+|+....|..........++.++|.+.+++++...+... ..-..|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777775442222 1223444444555555666666777777
Q ss_pred HHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--
Q 002286 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-- 408 (942)
Q Consensus 331 a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-- 408 (942)
+.+. -+....+..|..+|...+.+++|.++|+.+++.......+|..+|..+++.++-+.|...+.++++.-|.
T Consensus 1523 Acqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7752 2334456677777888888888888888888777777778888888888887778888888888877776
Q ss_pred cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+.......+.+. ..||.+.+..+|+..+...|+ ..++|+-....-.+.|+.+.+...|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 566666667766 778888887777777776655 3577777777777778888888888888774
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=2.2e-07 Score=78.18 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++.+|.+++..|++++|+..+++++...|.. ..++..+|.++...|++++|...|++++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677778888888888888888888887777 56677788888888888888888888888888877778888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCC
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p 265 (942)
.|+ ++.|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7788888877777665
No 182
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.7e-07 Score=90.90 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD----N-----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.-..|..+++.|+|..|...|++++..-+. + ..+++.+|.|+.+.++|..|+..+.++|..+|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345788999999999999999998765321 1 2456777777777777777777777777777777
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.-.++..|.++..+|+++.|+..|+++++++|+|..+...+..+.....+ ...+....|.+++..-
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55567777777777777777777777777777777776666666555443 1233355666665543
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=7.6e-08 Score=73.36 Aligned_cols=64 Identities=31% Similarity=0.536 Sum_probs=53.9
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 410 (942)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678888888888888888888888888888888888888888888888888888888888764
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.66 E-value=2.3e-07 Score=81.65 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=97.5
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
.+.++.....+..|.-+...|++++|..+|+-+.-.+| .+++.|+.||-|+..+|+|++|+..|-.+... ...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~ 103 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKN 103 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccC
Confidence 34455667788999999999999999999999999887 78999999999999999999999999999987 556
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 749 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
||...++.|.|+...|+...|+..|..++. .|.+..++
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 777899999999999999999999999998 46554433
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.66 E-value=7.4e-07 Score=76.72 Aligned_cols=86 Identities=23% Similarity=0.345 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..++..|...+..|+|++|++.|+.+....|.. ..+.+.++.+++..|+|.+|+..+++.++++|.++ +.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678899999999999999999999999988865 57889999999999999999999999999999873 56678
Q ss_pred hHHHHHHHcCC
Q 002286 202 GIGLCRYKLGQ 212 (942)
Q Consensus 202 ~la~~~~~~g~ 212 (942)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.66 E-value=1.3e-08 Score=97.80 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=155.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+-..|.-|+++|+|++|+.||.+.+..+|.|+..+...|..|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 44578888888888888888888888888888888888888888888888888888888887766 56677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|...+|...++.++++.|++.+..-.++.+..-. ++ +-+.+.-|....+....+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-------E~----~I~~KsT~G~~~A~Q~~~--------------- 232 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLR-------ER----KIATKSTPGFTPARQGMI--------------- 232 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-------hh----hHHhhcCCCCCccccchh---------------
Confidence 8888888888888888888666544443332111 00 001111122111111110
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+++ ..-.-|..+...|.++.++..+...+... ..+...... +..+.+..+++.++.-.-+.+.
T Consensus 233 --Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 233 --QIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred --hhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 000 01122445566667777777666555421 222222222 5667777888888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
.+|.........+..-.-.|...++...++.++.+.|.+......+
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~ 341 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETE 341 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhh
Confidence 6666555555555555566777788888888888888765444433
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=5.9e-07 Score=85.99 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHH
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 350 (942)
.+..|.-++..|+|..|...|...++..+..+..+.++|+||.+++.+|+++.|...|..+.+.++.+|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 34444555555666666666666666655666666777777777777777777777777777766666666666777777
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (942)
+...+|+.++|...|+++++.+|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777777665543
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.64 E-value=0.00016 Score=71.89 Aligned_cols=296 Identities=16% Similarity=0.113 Sum_probs=193.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh-CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
.|.+....|+-..|.+.-.+.-++ ..+..+-+++.-+..-.-.|+++.|.+-|+-++. +|..- +..|-.+|+....
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr 166 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQR 166 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHh
Confidence 344555566666666666665533 2333345555566666667777777777776654 33211 2222233333222
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHH-hcCCHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYH-SKGDYE 322 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~la~~~~-~~g~~~ 322 (942)
.+..+.|..+.+++...-|.-+.+....-...+..|+++.|+++.+......-..+. ...+...-+.... ...+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 233777777777777777777777777777777777777777777766543222222 1122222222211 223577
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 002286 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRK 401 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 401 (942)
.|...-.++.+ ..|+.+.+-..-+..++..|+..++-.+++.+.+..|. +++. +..++.+.|+.... ++-..+
T Consensus 247 ~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 247 SARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCCcHHHHHHHHHH
Confidence 78888878877 67888888888999999999999999999999998875 3322 22334455654332 233344
Q ss_pred HHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcc
Q 002286 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (942)
Q Consensus 402 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~ 478 (942)
+..+.|++.......+..- ..|++..|...-+.+....|. ..++..++.+-... |+-.++..++.+++...
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4556899999999999988 999999999888888777654 46777778876655 99999999999998753
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.60 E-value=0.00018 Score=73.08 Aligned_cols=203 Identities=30% Similarity=0.379 Sum_probs=108.3
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN- 276 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~- 276 (942)
....+..+...+.+..+...+...+. ..+.....+...+......++ +..++..+..+....+...........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK---YEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 33444444444444444444444443 334444444444444444444 444444444444444433222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHc
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKL 355 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~ 355 (942)
++...|+++.+...+.+++...+............+..+...++++.|+..+..++.. .+. ....+..++..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHc
Confidence 4444444444444444443211000123344444444566667777777777777652 233 455566677777777
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 408 (942)
+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777777765566666666666556677777777777777665
No 190
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.59 E-value=7.2e-05 Score=76.15 Aligned_cols=219 Identities=25% Similarity=0.289 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+.+..+...+.......+. ........+..+...+.+..+...+...+. ..+.....+...+......+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455777888888877776 367888899999999999999999999987 678888899999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhccHHhHHHHHHHHHH
Q 002286 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
.+..++...+.. .......+. ++...|+++.|...|.+++..+| .........+..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 999999987776 344455555 89999999999999999988776 344555566666666666 8888888888
Q ss_pred HHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 260 AFEIYPY-CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 260 ~~~~~p~-~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
++...+. ....+..++..+...+++..+...+..++...+. ....+...+..+...|.++.+...+.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887 4656666666666655555555555555543321 223333444444444444444444444443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.57 E-value=2.1e-06 Score=73.09 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~ 202 (942)
|.+++.+|.++-..|+.++|+..|++++...+.. ..+++.+|..+...|++++|+..+++.+...|++ ...+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578899999999999999999999999876544 5688999999999999999999999999988872 1566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~ 225 (942)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999888765
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.56 E-value=0.0015 Score=66.78 Aligned_cols=440 Identities=14% Similarity=0.034 Sum_probs=226.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCc-----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 002286 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (942)
Q Consensus 105 ~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~ 179 (942)
.+++++.+|...|.++.....+.+ +++.++..-.+-.++.+.-...+...-+..|..+...+..|...++.|+|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456677799999999876654443 344455566667788888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------------chh--hHhhHHHHHHHcCCHHHHHHHHHHHHhh-CC----CCHHHHHH----
Q 002286 180 DSLEFYKRALQVHPSC------------PGA--IRLGIGLCRYKLGQLGKARQAFQRALQL-DP----ENVEALVA---- 236 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~------------~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~-~p----~~~~~~~~---- 236 (942)
+|+..+..-...-... .++ .-...+.|+...|.+.+++..+.+.+.. -| -+.+.+..
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999887665542111 011 1134689999999999999999998764 22 24444443
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcC-CHHH---HHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-MALNYLANHFFFTG-QHFL---VEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g-~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
+|..|+-.- .++. ...+.|+.- .+.+.+-.+..... -|.+ ...++..+....-..|..
T Consensus 177 lsrSYfLEl-----~e~~-----s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e------- 239 (549)
T PF07079_consen 177 LSRSYFLEL-----KESM-----SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE------- 239 (549)
T ss_pred HhHHHHHHH-----HHhc-----ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh-------
Confidence 333332210 0000 001112111 11111111111110 0111 111222111110000100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-----CCcHHHHHHHHHHH
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCETLKALGHIY 386 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~ 386 (942)
..--+-+++..+++.. .+|....+.-.+-.-... +.+++...++.+.... ..-...+..+-...
T Consensus 240 -----~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 240 -----RLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred -----hccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0001111222221111 223332222222222222 4444444444433221 11123333444445
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH------HHH--hcCCHhHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGV 456 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la------~~~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~l~~ 456 (942)
.+.++...|..++.-...++|......-.+. .+. ...++.+-..++.-...+. ..+.+ .-...+...+.
T Consensus 309 Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHH
Confidence 6678888888888888788887652211111 111 1111222122221111111 11110 01234555677
Q ss_pred HHHHcCC-HHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHH
Q 002286 457 IHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (942)
Q Consensus 457 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 535 (942)
-+++.|. -++|+..++.++.-. +.+....... ..+
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n~v-~~f 423 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECENIV-FLF 423 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHHHH-HHH
Confidence 7888887 788899998888732 2222111110 000
Q ss_pred hhcCCHHHHH--HHHHH------HHH---hCC---CcHHHHHHHH--HHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 536 EQIHDTVAAS--VLYRL------ILF---KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 536 ~~~g~~~~A~--~~~~~------~l~---~~p---~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
.+ ..+..|. ..+.+ .+. +.| .+.+.-..++ ..++..|++.++.-+-.-..++.| ++.++..+
T Consensus 424 vK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 424 VK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred HH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 00 0111111 01111 111 122 2234444444 447789999999999999999999 99999999
Q ss_pred hhhhccccchHHHHHHHHHh
Q 002286 600 GDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~ 619 (942)
|.++....+|.+|..++...
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999999853
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.55 E-value=0.00037 Score=69.38 Aligned_cols=263 Identities=19% Similarity=0.140 Sum_probs=131.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
+-.++.-+...+..|+++.|.+-|+.++. +|.- ...+-++-.-..+.|..+.|..+-.++-...|.- +..+...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHH
Confidence 44455556667777777777777776653 2221 1122222222345577777777777777777776 3334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHH-HhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 207 RYKLGQLGKARQAFQRALQL---DPENVE---ALVALAVMD-LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~---~p~~~~---~~~~l~~~~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
....|+++.|++..+..... .++..+ +-..-+... .-..+ ...|......+.++.|+...+-..-+..++
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 55677777777776654432 222111 111111111 11112 555666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChH
Q 002286 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (942)
..|+..++-++++.+-+..+++ .++..|....--+.++.-++++.......|++....+..+..-+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666666666666665543221 12223333222233333444333322233445555555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 002286 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (942)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~ 404 (942)
.|...-+.+....|.. .++..++.+-... |+-.++...+-++++
T Consensus 347 ~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555555555544432 2333344443332 555555555555443
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.55 E-value=2.5e-06 Score=89.16 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHH
Q 002286 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (942)
..+...++++.|+..|++..+.+|+ +...+|.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 3444456777777777777666653 44556666666777777777777777777766 5666667777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 216 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
|+...++++...|++...|..|+.+|...|+ ++.|+..+..+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence 7777777777777777777777777777777 77777666644
No 195
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.53 E-value=0.0022 Score=68.40 Aligned_cols=186 Identities=9% Similarity=-0.058 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..|..........|+++...-.|++++-- .......|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------------------------------------cA~Y~efW 334 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-------------------------------------------CALYDEFW 334 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------------------------------------HhhhHHHH
Confidence 55666666677888888888888888762 23467788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 607 (942)
...++.....|+.+-|...+..+.+.+ |..+...+.-+.+....|++..|...++......|+...+-........+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 888888888888888888777777754 6667777777777888889999999999988888888887777777777888
Q ss_pred chHHHHH---HHHHhhccCCCCch--hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 608 DWVKAKE---TFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 608 ~~~~A~~---~~~~~~~~~~~~~~--~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+.+.+.. .+.....-...... ..++......|.-. ++.+.|...+.+++...|.+...+..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 8777773 33322221111111 11111111111222 7778888888888888888877776666
Q ss_pred HHHHhcC
Q 002286 683 VVLAEKG 689 (942)
Q Consensus 683 ~~~~~~g 689 (942)
.+....+
T Consensus 483 ~~~~~~~ 489 (577)
T KOG1258|consen 483 RFELIQP 489 (577)
T ss_pred HHHHhCC
Confidence 5555443
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.53 E-value=0.0026 Score=67.98 Aligned_cols=392 Identities=14% Similarity=0.074 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHH
Q 002286 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 145 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a 223 (942)
+.+...|...+...|-....|...|..-++.|..+.+..+|++++.--|-+ ...|.. ++.+-...|+.+.-...|++|
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555666666666677666677777777777777777777777777766655 333332 333333456666666677776
Q ss_pred HhhCCCC---HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHH
Q 002286 224 LQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG------QHFLVEQLTETA 294 (942)
Q Consensus 224 l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g------~~~~a~~~~~~~ 294 (942)
......+ ...|-........+++ ...-...|++.++.--.....++..=.-+.... ..+++..+-...
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 6654432 2233333333333333 555555555555432211111111100000000 011111110000
Q ss_pred HhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhc-------HHHHHHHcCChHHHHHHHH
Q 002286 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYG-------LGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 295 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~ 366 (942)
... ......+...+ .....+..... .+........ .-.++.......+.+..++
T Consensus 218 ~~~---------------~~~~~~~~~~e---~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 218 AER---------------SKITHSQEPLE---ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred Hhh---------------hhcccccChhH---HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 000 00000001111 11111110000 0000000000 0112222233334444444
Q ss_pred HHHHh-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 367 KVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 367 ~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
..++. .| .....|......-...|+++...-.|++++--.......|...+..+ ..|+.+-|-..+..+.+
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 44432 12 23345566666666777777777777777766666667777777777 66777776666666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCC
Q 002286 438 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (942)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (942)
+..+. .+.+...-+.+--..|++..|..+++.....
T Consensus 360 i~~k~----~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---------------------------------------- 395 (577)
T KOG1258|consen 360 IHVKK----TPIIHLLEARFEESNGNFDDAKVILQRIESE---------------------------------------- 395 (577)
T ss_pred hcCCC----CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh----------------------------------------
Confidence 54332 3445555556666667777777777776652
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCChhHHHHHHHHHHhhcC
Q 002286 518 VELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILFKYQDY---VDAYLRLAAI-AKARNNLQLSIELVNEALKVNG 590 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~~p~~---~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p 590 (942)
. |....+-...+......|+.+.+.. ++.....-..++ ...+...+.. +.-.++.+.|...+.++....|
T Consensus 396 --~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 396 --Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred --C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 2 4455555555556666666666663 222222211111 2233333333 3345677777777777777777
Q ss_pred CChhHHHHhhhhhcc
Q 002286 591 KYPNALSMLGDLELK 605 (942)
Q Consensus 591 ~~~~~~~~l~~~~~~ 605 (942)
.+...+..+..+...
T Consensus 473 ~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 473 DCKVLYLELIRFELI 487 (577)
T ss_pred ccHHHHHHHHHHHHh
Confidence 777666666555443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.49 E-value=3.4e-07 Score=70.59 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
..|+|++|+..|++++..+|++ ..+++.+|.|+...|++++|...+++++..+|+++.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444 4444444444444444444444444444444444443333
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=3e-06 Score=72.17 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (942)
.+.+.+|.++...|+.++|+.+|++++......+....+++.+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456666777777777777777777776633333444556667777777777777777777777776666 55666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l 403 (942)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777776665554
No 199
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.46 E-value=0.0048 Score=70.91 Aligned_cols=409 Identities=18% Similarity=0.144 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCchhhhhcHHHHHH-HcCChHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcCCHH
Q 002286 322 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 393 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 393 (942)
..|+.+++.+++..+.+ ...+.+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44566666666422221 223345667777776 67778888888888766542 222 23456677777777666
Q ss_pred HHHHHHHHHHHhCcC---c-HHHHHHH--HHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHH
Q 002286 394 KAQELLRKAAKIDPR---D-AQAFIDL--GELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 465 (942)
Q Consensus 394 ~A~~~~~~~l~~~p~---~-~~~~~~l--a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 465 (942)
|...+++.++.... . ....+.+ ..+. ..+|+..|+..++.........+++.- ..+....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887765433 1 1112222 2222 336888888888888876653322111 123333466677778888
Q ss_pred HHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH--HHhhcCCHHH
Q 002286 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 543 (942)
Q Consensus 466 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 543 (942)
++++.++.+....... .+++ . ..+....++..+-. +....|++..
T Consensus 197 d~~~~l~~~~~~~~~~-q~~~------------------------------~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSL-QLDP------------------------------S--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhc-ccCC------------------------------C--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888886532100 0000 0 11223334444433 3456677666
Q ss_pred HHHHHHHHHH------hCC---C---------------------c------------HHHHHHHHHHHHHcCChhHHHHH
Q 002286 544 ASVLYRLILF------KYQ---D---------------------Y------------VDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 544 A~~~~~~~l~------~~p---~---------------------~------------~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
+...++++-. ..| . . .-+|..-|......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 6655554322 111 0 0 11233334455566767688888
Q ss_pred HHHHHhhc-------CCCh-------------------hHHHHhhhhhccccchHHHHHHHHHhhccC---CC-----Cc
Q 002286 582 VNEALKVN-------GKYP-------------------NALSMLGDLELKNDDWVKAKETFRAASDAT---DG-----KD 627 (942)
Q Consensus 582 ~~~~l~~~-------p~~~-------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----~~ 627 (942)
+.++++.- |..+ .+....+++.+-.|++..|...+..+.+.. |. ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 77776542 1110 134456777778899999999988777642 11 23
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH--------HHHhcCCCC---HHHHHHHHHHHHhcCCchH---
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTSN---LYAANGAGVVLAEKGQFDV--- 693 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p~~---~~a~~~la~~~~~~g~~~~--- 693 (942)
+..++..|.. +... |+.+.|...|. .+....+.+ +.+..++..++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 5566666766 6666 99999999998 444555553 3455677777776665444
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH-------HhcCHHHHHHHHHHHHhhh-CCCCC----HHHHHHHHHHH
Q 002286 694 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF-------AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 760 (942)
Q Consensus 694 -A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~l~~~~ 760 (942)
...++.++..... +.+..++..++++. ..-...++...+..+++.. ....+ .-++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4555554433322 12222333332221 1123347888888888876 22222 44566777777
Q ss_pred HHcccHHHHHHHHHHHHHhCCCC
Q 002286 761 YEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 761 ~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
+ .|+..+..+....+.+.....
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 888888777776677765543
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=6.6e-07 Score=68.99 Aligned_cols=67 Identities=36% Similarity=0.503 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 418 (942)
++..|++++|+..|++++..+|++..++..+|.+|...|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578899999999999999999999999999999999999999999999999999998887777665
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.45 E-value=0.0027 Score=64.60 Aligned_cols=420 Identities=13% Similarity=0.105 Sum_probs=205.3
Q ss_pred EEEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 002286 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYT 94 (942)
Q Consensus 15 ~~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~ 94 (942)
|.---|.+|.|--.|.+-++..|.+...|+++...|-.+|.+++-.+++++...+.| +++ -+|...
T Consensus 17 vae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~------------~aw~ly 82 (660)
T COG5107 17 VAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IME------------HAWRLY 82 (660)
T ss_pred ccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--ccc------------HHHHHH
Confidence 333568999999999999999999999999999999999999999999999987654 221 244444
Q ss_pred HcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-----C-HHHHHHHHHHHHH---hCCCCHHHH
Q 002286 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-----E-VEQASSAFKIVLE---ADRDNVPAL 165 (942)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-----~-~~~A~~~~~~~l~---~~p~~~~~~ 165 (942)
..|... .++|..-..+|.+++...- +.+.|...-..-.+.+ . -..-.+.|+-++. .+|.....|
T Consensus 83 ~s~ELA------~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W 155 (660)
T COG5107 83 MSGELA------RKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYW 155 (660)
T ss_pred hcchhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchH
Confidence 455544 4456667777777765432 3444443222111111 0 1111223333333 466666666
Q ss_pred HHHHHHHH---------hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH---------HHHcC----CHHHHHHHHHHH
Q 002286 166 LGQACVEF---------NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC---------RYKLG----QLGKARQAFQRA 223 (942)
Q Consensus 166 ~~~a~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~---------~~~~g----~~~~A~~~~~~a 223 (942)
...+..+. .+.+.+.-...|.+++..--.+....|...-.. ---.| -|..|...|+..
T Consensus 156 ~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~ 235 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEI 235 (660)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 55554432 233455566677777764333322222211110 00011 244566666655
Q ss_pred Hhh-------CCCCHHH-----------HHHHHHHHHhhccH---HhHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 224 LQL-------DPENVEA-----------LVALAVMDLQANEA---AGIRK-GMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 224 l~~-------~p~~~~~-----------~~~l~~~~~~~~~~---~~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
..+ +|.+... |.+........+-. +-..+ ---.+++++...|-.+.+|+.....+...
T Consensus 236 ~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~i 315 (660)
T COG5107 236 QNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGI 315 (660)
T ss_pred HHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 443 2221111 22222221111100 00111 22244555555666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH---cCCh
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---LGDF 358 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~---~g~~ 358 (942)
++-+.|.......+... +...+.++..|...++-+....+|++..+.+.. .+..+..-.. .|++
T Consensus 316 sd~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q~L~r-------~ys~~~s~~~s~~D~N~ 382 (660)
T COG5107 316 SDKQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR-------KYSMGESESASKVDNNF 382 (660)
T ss_pred cHHHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHHHHHH-------HHhhhhhhhhccccCCc
Confidence 66666666665554322 224455555555555555555555554431100 0000000000 1122
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH--HHHHHHhcCCHhHHHHHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI--DLGELLISSDTGAALDAFKTAR 436 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~la~~~~~~~~~~A~~~~~~a~ 436 (942)
+..-+.+-+-. ....-++..+...-.+..-.+.|..+|.++-+..-....++. .+...+..|++..|..+|+-.+
T Consensus 383 e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl 459 (660)
T COG5107 383 EYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGL 459 (660)
T ss_pred cccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHH
Confidence 11111111110 111223333333333444455666666665543312222222 2222336666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..+++ .+...+..-..+...++-+.|...|++++.
T Consensus 460 ~~f~d-----~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 460 LKFPD-----STLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HhCCC-----chHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 55544 222333333444556666666666666654
No 202
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.45 E-value=2.8e-07 Score=88.86 Aligned_cols=226 Identities=9% Similarity=-0.060 Sum_probs=155.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
...|.-|+++|+|++|+.+|.+++. ..|.++..+.+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~NR 137 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHINR 137 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhhH
Confidence 4458899999999999999999998 678899999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccc---
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD--- 608 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~--- 608 (942)
|.+|.+...+..|..-...++.++..+..+|.+.+..-..+|+..+|.+.++.++.+.|++.+..-.++.+-.-...
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876665554221000
Q ss_pred ------hHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 609 ------WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 609 ------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+..|..--.+++.. -.-|+. ++.. |.++.++..|..-+..+.++...-.+ +
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~---------K~~G~~-Fsk~------------~~~~~~i~~~~~~~A~~~~~~~L~~~-~ 274 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPI---------KKPGYK-FSKK------------AMRSVPVVDVVSPRATIDDSNQLRIS-D 274 (536)
T ss_pred hhcCCCCCccccchhhhccc---------cCcchh-hhhh------------hccccceeEeeccccccCccccCccc-H
Confidence 11111111111111 112444 5555 77788887776655544333222222 4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
..+.+.-+++.|+.-..+.....| .........|.+-.-.|...+|...++.++...|...
T Consensus 275 ~~~~KI~~~~~~~~~~~~~~~~~~-----s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 275 EDIDKIFNSNCGIIEEVKKTNPKP-----TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred HHHHHHhhcchhHHHHHHhcCCCC-----CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 455555666676655555544333 1112223334444455677778888888887755443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=1.4e-06 Score=68.33 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=30.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
.++...++|++|+.++++++..+|++ +..+...|.++..+|++.+|...|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444445555555555555555444 3444445555555555555555555555555544443
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=6.4e-06 Score=86.10 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=88.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHh
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 249 (942)
..+...++++.|+.++++..+.+|+. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 34444567777887777777776553 44577777777777778888888877777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~ 294 (942)
++.|+...+++....|.+...|..|+.+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777888888888888887778888888888888888777776654
No 205
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.42 E-value=0.0086 Score=68.87 Aligned_cols=467 Identities=15% Similarity=0.098 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHHHhcCCH
Q 002286 250 IRKGMEKMQRAFEIYPYCA----MALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~-~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (942)
...|+.+++-+++..+-.| .+...+|.+++ ...+++.|+..+++++.....+. ....+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4455666665554222222 35555666665 56667777777777665443311 1234455667777777776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-hhcH--HHHHHHcCChHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (942)
. |...+++.++.....+..... .+.+ .......+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 888888887754432222222 1111 233333378888888888877654 23333 223345556666777
Q ss_pred HHHHHHHHHHHHhC----------cCcHHHHHHHHHHH---hcCCHhHHHHHHHHHHHHHHHcCCCC-------------
Q 002286 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (942)
Q Consensus 393 ~~A~~~~~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (942)
+++++.++.+.... +....++..+-.+. ..|++..+...+++.-..........
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777664321 12234444444433 66776666666555544433321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 447 ------------~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
+ .-++..-|......|..+.|.+++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 01222234455556666677777777776321000
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
.......+..... ...-..++..+. ....+..+.+.+-.+++..|...+
T Consensus 336 ------------~~~~~~~~~sl~~-------------~~~~~~~~~~l~------~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 ------------IKSPSAPSESLSE-------------ASERIQWLRYLQ------CYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ------------ccCCCCCCcCHHH-------------HHHhHHHHHHHH------HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0000000000000 000011111110 234555666777788888888887
Q ss_pred HHHHhhc---CC------ChhHHHHhhhhhccccchHHHHHHHH--------HhhccCCCCchhHHHhhhhHHHHHHHhh
Q 002286 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (942)
Q Consensus 583 ~~~l~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~y~~~~~~ 645 (942)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+ +..|. +.-.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il-a~LNl-~~I~~-~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL-AALNL-AIILQ-Y 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH-HHHHH-HHHhH-h
Confidence 7766543 22 35678888888888899999999997 44444444444432 22232 22221 1
Q ss_pred hhcChhHHHHHHH--HHHHHHHHH---HhcCCC-CHHH-HHHHHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-ch
Q 002286 646 EKRAPKLEATHLE--KAKELYTRV---IVQHTS-NLYA-ANGAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MP 714 (942)
Q Consensus 646 ~~~~~~~~~~~~~--~A~~~~~~~---l~~~p~-~~~a-~~~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~ 714 (942)
+.. .... ++...++.. ....|+ +... +..+..++. ..-...++...+.+.++.. ....... ..
T Consensus 462 ~~~------~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~ 535 (608)
T PF10345_consen 462 ESS------RDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA 535 (608)
T ss_pred hcc------cchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence 110 0111 133333322 222222 1222 222222222 2223457777777776655 2111111 23
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHH-----HHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQIL-----LYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
-++.-+++.++ .|+..+.......+.......+| ...+ ..+...+...|+.++|.....+.-.
T Consensus 536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556677777 78888888887777765544433 2223 2445567778999999887766543
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=3.4e-05 Score=68.20 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+..+.+|.+.+.. .|. ....+.+|..+...|++.+|...|.+++.- ..+++..++++|...+..+++..|...+
T Consensus 73 ~R~~Rea~~~~~~----ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 73 ERHLREATEELAI----APT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hHHHHHHHHHHhh----chh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3344455555444 343 446788999999999999999999999863 5578899999999999999999999999
Q ss_pred HHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 186 KRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 186 ~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
+.+.+.+|.. .++..+.+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 9999998865 4667888999999999999999999999999886 6777788888888886
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=5.7e-06 Score=73.81 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
.-|.-++..|+|.+|..-|..++...|..+ ..+...|.+.++++.++.|+..+.++++++|.. ..+....+.+|
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAY 178 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHH
Confidence 345555555555555555555555555432 234444555555555555555555555555555 33344445555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
.++..+++|+..|.++++.+|....
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 5555555555555555555554433
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.35 E-value=2.9e-06 Score=66.48 Aligned_cols=70 Identities=33% Similarity=0.416 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
|..++...+++++|+.+++.++..+|+++..+..+|.++...|++.+|...++++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999998887765544
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00038 Score=65.41 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHH
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD----P--ENVEALVAL 237 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~l 237 (942)
+.+.++.++.-.|.|.-.+..+.++++.+|...+.....+|.+-.+.|+.+.|..+|+++-+.. . .+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556666777777777777777777777755546666677777777777777777777443321 1 233344555
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
+.++...++ +..|...+.+++..+|.++.+.+..|.+....|+..+|++..+.++...+.........+++
T Consensus 259 a~i~lg~nn---~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNN---FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccc---hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 566666666 77777777777777777777777777777777777777777777666554443333333333
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=9.8e-05 Score=69.21 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC-----CchhHHHh
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLS 633 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~ 633 (942)
...+.++.++.-.|.|.-....+.+.++.+ |..|.....+|.+.++.|+.+.|..+|+.+-+.... ....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344455555556666666666666666665 455556666666666666666666666644321111 12223334
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
.+.+ |... +++..|...|.+++..||.++.+.++.|.++.-.|+...|+..++.+....|+... +
T Consensus 258 ~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l--~ 322 (366)
T KOG2796|consen 258 SAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL--H 322 (366)
T ss_pred hhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch--h
Confidence 4445 5555 88999999999999999999999999999999999999999999999998885422 3
Q ss_pred hhHHHHHHH
Q 002286 714 PDVWINLAH 722 (942)
Q Consensus 714 ~~~~~~la~ 722 (942)
..+.+|+-.
T Consensus 323 es~~~nL~t 331 (366)
T KOG2796|consen 323 ESVLFNLTT 331 (366)
T ss_pred hhHHHHHHH
Confidence 345555543
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6.4e-06 Score=73.51 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
+-.-|..+|+.|+|.+|..-|..++...|.. +...|.-++...|.+.+++++.+ .|+..+.+++.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e-----------~aI~dcsKaie 162 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWE-----------SAIEDCSKAIE 162 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHH-----------HHHHHHHhhHh
Confidence 3444666777777777777777777665532 12244445555566666666555 66666777777
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 168 (942)
++|.+..++..+|.+|-+..+|++|+..|.+++..+|..-.+.-..
T Consensus 163 l~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 163 LNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7776666666667777666667777777777766666655444333
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.27 E-value=2.9e-06 Score=67.48 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC----C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
+...++.++|.+|..+|++++|+.+|++++......+ + ..++..+|.++...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4577899999999999999999999999997642111 1 6778899999999999999999999998763
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.26 E-value=0.0081 Score=61.60 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
.+...|.++-.++++.+|..+|.++.+...+++ +.+.++....+-..+.+.-...+...-+..|.+ +.+.+-.|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 455678889999999999999999987655443 334444445555666666666666666677866 66777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
...++.+.+.+|+..+....+.-.++...|...- +.+-+ .+...-...|.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~l~-----------~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQLF-----------SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHHHh-----------hHHHHHHHHHHHHHhcCCc
Confidence 8889999999999888776554222222111111 00000 1112233456677777888
Q ss_pred HHHHHHHHHHHh
Q 002286 285 FLVEQLTETALA 296 (942)
Q Consensus 285 ~~a~~~~~~~~~ 296 (942)
.++...+++.+.
T Consensus 145 ~EgR~iLn~i~~ 156 (549)
T PF07079_consen 145 SEGRAILNRIIE 156 (549)
T ss_pred chHHHHHHHHHH
Confidence 877777777664
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=0.00024 Score=62.97 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 002286 655 THLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (942)
|++.+|...|++++. ...+++..+.+++......+++..|...++++.+..|.. ..|+....+|.++..+|.+.+|
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhH
Confidence 555555555555554 234455555666666666666666666666666655432 3455666666666666666666
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHH
Q 002286 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (942)
Q Consensus 734 ~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 771 (942)
...|+.++..+| ++......+..+.++|+..+|..
T Consensus 180 esafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 180 ESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHH
Confidence 666666666543 34455555566666665555544
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.21 E-value=0.01 Score=60.65 Aligned_cols=419 Identities=12% Similarity=0.036 Sum_probs=228.3
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
-+..-++.+|++...|+.+..-+-.+|.+++-.+.+++...-.|--+.+|......-...++|.....+|.+++...-+-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45556788999999999999999999999999999999988888778888776666677789999999999988765442
Q ss_pred chhhHhhHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc------HHhHHHHHHHHHH
Q 002286 196 PGAIRLGIGLCRYKLGQ----------LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQR 259 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~~~~A~~~~~~ 259 (942)
+.|... .-|.+.-+ .-+|.+..-.+.-.+|.....|...+..+..-.. ....+.-...|.+
T Consensus 110 --dLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 110 --DLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred --hHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 333322 22222211 1122222222223467777777766665443221 1124455556666
Q ss_pred HHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 002286 260 AFEIYPYCAM-ALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (942)
Q Consensus 260 ~~~~~p~~~~-~~~~la~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 335 (942)
++...-++.. .| .+|+.-+.-..++... .+..| -|-.|...|++.....
T Consensus 187 al~tP~~nleklW----------~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt 239 (660)
T COG5107 187 ALQTPMGNLEKLW----------KDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLT 239 (660)
T ss_pred HHcCccccHHHHH----------HHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHh
Confidence 6554333221 11 1122111111111100 00001 1222223333222110
Q ss_pred C----CCCCch-----------hhhhcHHHHHHHc-----CCh-H-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002286 336 N----KPHEFI-----------FPYYGLGQVQLKL-----GDF-R-SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393 (942)
Q Consensus 336 ~----~~~~~~-----------~~~~~la~~~~~~-----g~~-~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 393 (942)
. .+|.+. .-|++....-... |+. . .---.+++++...|-.+++|+.........++-+
T Consensus 240 ~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 240 RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred ccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHH
Confidence 0 000000 0022221111111 111 1 1222456667777777888888777777778888
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHH
Q 002286 394 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQ 469 (942)
Q Consensus 394 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 469 (942)
.|+....+.+...|. ....++..+ ...+.+....+|++..+..... +..+..-.. -|+++...+
T Consensus 320 ~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~E 387 (660)
T COG5107 320 KALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKE 387 (660)
T ss_pred HHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHH
Confidence 887777776655554 556677777 5566666666666665543221 000000000 111211111
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
++-+-.. ....++........+..-.+.|..+|.
T Consensus 388 ll~kr~~----------------------------------------------k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 388 LLLKRIN----------------------------------------------KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHHHHHh----------------------------------------------hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1110000 112222223333334445677777887
Q ss_pred HHHHhCCCcHHHHHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 550 LILFKYQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 550 ~~l~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
++-+..-...++|..-|.+ +...|++..|...|+-.+...|+++.....+-..+...++-..|...|+.++..
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 7765442334445444444 556789999999999999999998887777777888888988999999877653
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.16 E-value=3e-05 Score=63.98 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHH
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYL 756 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l 756 (942)
..-|..+.+.|+.+.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... -.++...
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3457888899999999999999999998 88999999999999999999999999999998654433 5677888
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
|.+|...|+-+.|..-|..+-.+..
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999999988887764
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=4.3e-06 Score=66.51 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
|+-..+++.+|.+|...|++++|+.+|+++++... ++..+....++.++|.++..+|++++|+++|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567889999999999999999999999997631 11112346789999999999999999999999999864
No 218
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.019 Score=59.89 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=81.6
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHHhhcCCChhHHHH
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSM 598 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~ 598 (942)
.+...+....+-..+.+.|-+.+|...|.......|-+...+..+..+-.. .-+...+..+|+.++.....++++|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345666666777788888999999999999999988887777766665332 234778899999999999999999999
Q ss_pred hhhhhccccchHHHHHHHHHhhcc
Q 002286 599 LGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
+-..-...|..+.+-..+-++.+.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHh
Confidence 888888899888887777777663
No 219
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.10 E-value=0.001 Score=69.75 Aligned_cols=116 Identities=20% Similarity=0.086 Sum_probs=83.4
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
...+++.+|.+...+..-+.....+|+..+|..++..++-..|.. -.+++.+|.++.+.|...+|--++..++...|.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 334455555555444445555566788888888888888776654 346788888888888888888777777776666
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
. ...++.+|.++..+|++......|..+.+.+|.....
T Consensus 282 ~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 282 F-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred c-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 5 4447788888888888888888888888888875444
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00043 Score=67.39 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc-CCCCchhHHH--hhhhHHHHH
Q 002286 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNYFA 641 (942)
Q Consensus 565 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~y~~ 641 (942)
-+.+....|++.+|....++.+...|.+..++..--.++..+|+...-...+++++.. .++...++++ .++-. ...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 3456677899999999999999999999999999999999999999999999999876 4443334332 22222 334
Q ss_pred HHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 002286 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (942)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 721 (942)
. |.|++|.+.-+++++++|.+.++...++.++...|++.++.+...+--+.-..+.. ....-|..-|
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 4 99999999999999999999999999999999999999999998887654432211 2344567778
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 722 HVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
-++...+.|+.|.+.|..-+-+-....|
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 8889999999999999876544334444
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.08 E-value=0.00014 Score=60.22 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHH
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~ 207 (942)
+-..|..+...|+.+.|++.|.+++..-|.++.+|...|..+.-+|+.++|+.-+++++++.... .-..+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999986433 134577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 002286 208 YKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (942)
..+|+.+.|+..|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999998887643
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.07 E-value=1.5e-05 Score=82.50 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
+|+++.+++++|.+|+..|+|++|+..|++++.++|++..+ |+.+|.+|..+|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555556665555566666666665555555555532 555555555555555555555555554
No 223
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.04 Score=62.27 Aligned_cols=227 Identities=17% Similarity=0.122 Sum_probs=157.8
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
+.+.+|..+|.+..+.|...+|++.|-+ .+++..|.....+....|.|++-+.++.-+.+.. ..+.+-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHH
Confidence 3677888999999999999999988765 3566778888888899999999988887776543 233444455566
Q ss_pred hccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
|.+.++..+-.+.+. +|. ..-.-..|+- ++.. |.|+.|.-+|.. +.-+..|+
T Consensus 1176 yAkt~rl~elE~fi~-----gpN--~A~i~~vGdr-cf~~------------~~y~aAkl~y~~--------vSN~a~La 1227 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-----GPN--VANIQQVGDR-CFEE------------KMYEAAKLLYSN--------VSNFAKLA 1227 (1666)
T ss_pred HHHhchHHHHHHHhc-----CCC--chhHHHHhHH-Hhhh------------hhhHHHHHHHHH--------hhhHHHHH
Confidence 667777655444332 222 2223346776 6666 889988888864 34577889
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
..+...|+|..|.+..+++ ++..+|-....++...+.|.-|.-+=-.. --.+.-+-.+...|..
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCGL~i------ivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICGLNI------IVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcCceE------EEehHhHHHHHHHHHh
Confidence 9999999999998887776 45667877777777777776664331110 1124556677777888
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHH
Q 002286 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (942)
Q Consensus 763 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 799 (942)
.|-+++-+..++.++.+.-.+-...-.+|..|.+.-.
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 8888888888888887776555555556766665543
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0013 Score=60.88 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCCC-H
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-I 448 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~ 448 (942)
.+...+.+|.+ +++.+|+.++++++++..+. +..+..+|.+| ...++++|+.+|+++-+.+........ .
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 33344444433 37777777777777765443 23455889999 568999999999999998765432222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..+...+..-...++|.+|+..|++........++ .....-.-+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~Kdyf 198 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYF 198 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHH
Confidence 56667777888899999999999998763211000 011112234
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (942)
+.-|.++.-..+.-.+...+++....+|...++
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 445666666677777777788888888876443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=2.5e-05 Score=80.92 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 157 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.+|+++.+++.+|.+++..|+|++|+..|+++++++|++.. .+|+++|.||..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 459999999999999999999999999973
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0035 Score=58.21 Aligned_cols=186 Identities=18% Similarity=0.135 Sum_probs=122.4
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (942)
.+++++|.++|.++ +..| ...++..|-..|.++.....+.+...+...-+.-+.-.++.+++.+|
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 34677777766655 3344 44556666666666666655555444433323333334455588888
Q ss_pred HHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-CCHHHHHH
Q 002286 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASV 546 (942)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 546 (942)
+..++++++.....+.+ ..-..-+..+|.+|+.. .++++|+.
T Consensus 93 v~cL~~aieIyt~~Grf-------------------------------------~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRF-------------------------------------TMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred HHHHHHHHHHHHhhhHH-------------------------------------HHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 88888887743221110 11233455778888765 88999999
Q ss_pred HHHHHHHhCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-------HHHHhhhhhccccchHHHH
Q 002286 547 LYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 547 ~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~ 613 (942)
.|+++-.-... -..+++..+......++|.+|+..|+++....-+++. -++.-|.+++-..+.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 99998764432 2457788888888999999999999999887766654 3344566777778888888
Q ss_pred HHHHHhhccCCC
Q 002286 614 ETFRAASDATDG 625 (942)
Q Consensus 614 ~~~~~~~~~~~~ 625 (942)
..+++..+..|.
T Consensus 216 ~ALeky~~~dP~ 227 (288)
T KOG1586|consen 216 RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHhcCCc
Confidence 888888888776
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=0.00043 Score=70.49 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (942)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.+++..| .++..|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666678888888888666 5566669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 734 ~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+|++++...+... ...++......-.+.|+.+...++.+++.+..|++..+.
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999855444 356888888888899999999999999999999865443
No 228
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.92 E-value=0.0038 Score=65.70 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=82.8
Q ss_pred HHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHH
Q 002286 676 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754 (942)
Q Consensus 676 ~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 754 (942)
+...++|-+|. -.|+...|+.++..+....|. .......+||.++..-|....|-..+.+++.. ....|-..+
T Consensus 607 w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~ 680 (886)
T KOG4507|consen 607 WLILNEAGLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFL 680 (886)
T ss_pred EEEeecccceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHH
Confidence 33334444444 478888888888888777763 23345678888888888888888888888887 456677888
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.+|+++....+.+.|++.|+.|+++.|+++.+.-.+-.+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888888888888888888888888777665544
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.90 E-value=0.00013 Score=65.07 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
-|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~- 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF- 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-
Confidence 46666666666666777777777776666655533 2344445555555555555555555555444331
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
+.|+. .. ....|++|..+|+++...+|++......
T Consensus 85 ------------l~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 85 ------------LTPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp ------------H---H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ------------hcCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 11111 00 0112566777777777777776654333
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0022 Score=59.86 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=84.5
Q ss_pred hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
....+.++..+++++..+.-..|.+.+...-...+.-.....++++|+.+|++++...... .
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--------------d---- 144 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--------------D---- 144 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--------------c----
Confidence 4444455555555555554444444333333333333445566777777777776631100 0
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcCC
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~l~~~~~~~~~ 574 (942)
....-...+-..++++.+...+.+|...+.+-.. ..|+....+.....++.-..+
T Consensus 145 -------------------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 145 -------------------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred -------------------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 0011233445566777777777777666554332 223333445555566666778
Q ss_pred hhHHHHHHHHHHhhc----CCChhHHHHhhhhhccccchHHHHHHHH
Q 002286 575 LQLSIELVNEALKVN----GKYPNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+..|..+++...++. |++..+..+|-.. +..|+.+.....+.
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 888888887765543 3444455555554 34566666555543
No 231
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.87 E-value=0.00011 Score=65.60 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~ 143 (942)
...+++|+.-|+.++.++|+..++++.+|.+|...+.
T Consensus 48 ~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 48 KKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999988763
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00037 Score=71.00 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
+|+.......+.+..+.|..+|.++.+..+.....|...|.+.+. .++.+.|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 455555555555566666666666664444456666666666555 344444666666666666666 555666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|+.+.|+.+|++++..-|... ..|..........|+ .+....+..++....|.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 66666666666666666555433 355555666666666 6666666666666666644
No 233
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0002 Score=66.40 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
...|..|+..|.+++.++|..+..|-.++.++++..+++.+.....++++++|+.+.+.+.+|.+......|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 002286 187 RALQVH 192 (942)
Q Consensus 187 ~~l~~~ 192 (942)
++..+.
T Consensus 103 ra~sl~ 108 (284)
T KOG4642|consen 103 RAYSLL 108 (284)
T ss_pred HHHHHH
Confidence 996653
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.85 E-value=0.0025 Score=65.66 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhh----cCCChhHHHHhhhhhcc---ccchHHHHHHHHHhhccCCCCchhHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 631 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 631 (942)
++....+-..|....+|+.-+.+++.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666777778888777777776665 45566777788888877 78888888888887666666677777
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHH
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (942)
..+|.+ |.......... .....++|+..|.++...+| +.+.-.+++.++.-.|.-.+..
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence 778888 77664332111 12569999999999999995 4555556677777667544433
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00016 Score=66.93 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+.+..++.+|..+ ....++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455666778899999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
.|+..+.++..+......+....+...+-.+-...=...++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999998887776554444555555444443333334433
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.84 E-value=4.4e-05 Score=52.13 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 170 (942)
|.+++.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577888888888888888888888888888888888887765
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.80 E-value=0.0044 Score=64.67 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=129.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
..+..-.++..+...-++.-.+|++++|+++.+++.|+.-.... ..++..+|+++++.......- ......
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~T-----i~Eae~l~rqAvkAgE~~lg~----s~~~~~ 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAST-----IVEAEELLRQAVKAGEASLGK----SQFLQH 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccC-----HHHHHHHHHHHHHHHHHhhch----hhhhhc
Confidence 34556667788888999999999999999999999888654443 677888888877653321100 000000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|..- + ..... .......+...+|.+..+.|+.++|++.+..+++..+ ..+...++.+|..++...+.|.+
T Consensus 243 ~g~~~------e-~~~~R-dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 243 HGHFW------E-AWHRR-DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred ccchh------h-hhhcc-ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHH
Confidence 01000 0 00000 0111234567789999999999999999999997543 23455678899999999999999
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 361 ALTNFEKVLEI-YPDNCETLKALGHIYVQL-GQ---------------IEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
+...+.+.-+. -|+.+...+..+.+-.+. ++ -..|.+.+.++++.+|..+..+..+
T Consensus 314 ~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 314 VQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 99998886443 256666665555544331 21 2346788899999998877665443
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0024 Score=62.38 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCch--hhHhhHHHHHH
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPG--AIRLGIGLCRY 208 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~--~~~~~la~~~~ 208 (942)
-..+.+....|++.+|....+++++..|.+..++..--.+++..|+...-...+++++.. +|+.|- .+.-.++.++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 345566778899999999999999999999999988888999999999999999999887 666543 33445788889
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
..|-+++|...-.++++++|.+..+...++.++...++ +.++.+...+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~t 235 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKT 235 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhc
Confidence 99999999999999999999999999999999999988 88888877654
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.77 E-value=6.4e-05 Score=51.31 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=32.3
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
.+++.+|..|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356777888888888888888888888888888887777764
No 240
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.76 E-value=0.0088 Score=67.48 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
+.....+|.+|..-+.-. ..+++.|+.+|..+..
T Consensus 244 ~~a~~~~g~~y~~G~~g~------~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGV------TQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhccccc------cccHHHHHHHHHHHHH
Confidence 344555566655443322 3345566666665544
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.045 Score=60.27 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhcHHHHHHHcCChHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
+...+..++....... |..+-..+..|+++...|+.++|+..|++++..-.. ..-....++.++.++.-+++|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666655544 445566666777777777777777777766531111 122234577788888888888888
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 002286 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (942)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~ 405 (942)
..++..+.+.+.-. ....+..|.|+...|+. ++|...+.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888765543 33456677777888877 7888888877654
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0048 Score=57.72 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=100.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHH-HHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKID-----PRDAQ-AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNI 454 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l 454 (942)
.+.+...+..+.++..+++++..+. |+... ++-.-+.+++..+++.|+.+|++++.+....+... -.+.+...
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3334444445555555555554432 32222 22223344477789999999999999887653322 23677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
+.++.+...+++|...+.+-....... +..+.....+.....+
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~-------------------------------------~~y~~~~k~~va~ilv 199 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKC-------------------------------------DAYNSQCKAYVAAILV 199 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHH-------------------------------------hhcccHHHHHHHHHHH
Confidence 889999999999988887755421100 0122233445555666
Q ss_pred HhhcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKY----QDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
+.-..++..|..+++..-++. |++..+.-+|.. .+..|+.+++...+..
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLSS 252 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHcC
Confidence 777789999999999866532 444555555544 3456888877766643
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.73 E-value=0.00064 Score=74.54 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcC
Q 002286 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (942)
Q Consensus 45 ~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~ 124 (942)
.+....--.|+-+.++..|..+..... .. .-+..+..|+....-.+-...+ . ...+...|..++.......
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~---i~----~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSEN---IR----SPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKRY 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCC---cc----hHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHhC
Confidence 333344445899999999988765321 11 1122333333222222222211 1 3455668999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
|+.+-.++..|+++...|+.++|+..|++++..... ...+++.+|.++..+++|++|...+.++.+.+.-+.....
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999999999988743222 2356788899999999999999999999988877767777
Q ss_pred hhHHHHHHHcCCH-------HHHHHHHHHHH
Q 002286 201 LGIGLCRYKLGQL-------GKARQAFQRAL 224 (942)
Q Consensus 201 ~~la~~~~~~g~~-------~~A~~~~~~al 224 (942)
+..|.|+...|+. ++|...|.++-
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8889999999988 55555555543
No 244
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.71 E-value=0.0082 Score=67.74 Aligned_cols=270 Identities=18% Similarity=0.175 Sum_probs=186.2
Q ss_pred chhHHHHHHHHHhhc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhh
Q 002286 524 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 588 (942)
Q Consensus 524 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~ 588 (942)
+......+|.++..- .+++.|+.+++.+... .-.++.+.+.+|.+|.... +...|+.++.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 667777778777653 5899999999998761 1224567888999998743 677899999998776
Q ss_pred cCCChhHHHHhhhhhcccc---chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 589 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
. ++.+.+.+|.++.... +...|..+|..+...+ ...+.+.++.+ |....... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHHH
Confidence 4 6778888999887755 6789999999998876 55667777777 65542222 67899999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNC 740 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a 740 (942)
++...+ ++.+...++..+... +.++.+...+....+..-.... .+...+.......... .+...+...|.++
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ-SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh-hHHHHHHHhccccccccccccchhHHHHHHHHH
Confidence 999988 556666666555533 7888888777777665421100 1111111111111111 2566777777776
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHc---c-cHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEA---E-QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 816 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~ 816 (942)
... .++.+...||.+|+.- + +++.|...|.++-... +...||++.+ ...+. .+
T Consensus 466 ~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~---------------g~ 522 (552)
T KOG1550|consen 466 AAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE---------------GI 522 (552)
T ss_pred Hhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc---------------Cc
Confidence 554 4577889999999875 3 5888999999988877 8999999994 43332 12
Q ss_pred HHHHHHHHHHHHHhhCC
Q 002286 817 AELENAVRVFSHLSAAS 833 (942)
Q Consensus 817 ~~l~~a~~~~~~l~~~~ 833 (942)
..+..|.+.+...+..+
T Consensus 523 ~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KVLHLAKRYYDQASEED 539 (552)
T ss_pred chhHHHHHHHHHHHhcC
Confidence 22677777777776644
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0034 Score=65.42 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=119.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHH
Q 002286 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643 (942)
Q Consensus 564 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~ 643 (942)
.+..-..+..+...-++...++++++|+.+.++..++.- ...-..+|...|+++++.... .++.. ....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~- 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ- 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-
Confidence 444455667777888888888888888888888777643 223456777777777664322 01111 0000
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 002286 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (942)
Q Consensus 644 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 721 (942)
...-+-..+...+. -+++...+|.+..+.|+.++|++.|..+++..|.. +...++.+|.
T Consensus 242 ----------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 242 ----------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ----------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 00000011111112 34566788999999999999999999999877742 4667999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH-ccc---------------HHHHHHHHHHHHHhCCCChh
Q 002286 722 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~ 785 (942)
.+++.++.|.++...+.+. .....+..+.+.|.-+..-.+ .|+ -..|.+.+.+|++.+|+-|.
T Consensus 303 e~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999998885542 111112234444444333222 122 13477889999999997654
No 246
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.67 E-value=0.13 Score=58.16 Aligned_cols=278 Identities=17% Similarity=0.053 Sum_probs=170.6
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-----c
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-----N 375 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~ 375 (942)
+...+.+..-+.-+...|..++|+.+.-.+- +|... ......+.-++..++.. .+...++.-|. +
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhC
Confidence 4446778888888888999999988776553 23222 22222344444444433 33333333343 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
+......+.......++.+|...+.++...-|. . ....-..+.+. ..|+++.|.+..+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 556667777888889999999888887764332 1 22333345555 8899999999999999998876655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch
Q 002286 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (942)
....++..+|.+..-.|++++|..+...+.+...... ......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-------------------------------------~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD-------------------------------------VYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-------------------------------------cHHHHH
Confidence 5667888999999999999999999999877421100 122344
Q ss_pred hHHHHHHHHHhhcCCHHHHH--HHHHHH----HHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----cCCChh-
Q 002286 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~- 594 (942)
.+....+.++...|+...|. ..+... +...|.........+.++...-+++.+.......++. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55666688888888433332 333322 2233443223333333333222245444444444433 233222
Q ss_pred --HHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+.+.++.++...|+.++|...+..+......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2346788888889999888888877665433
No 247
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.57 E-value=0.00011 Score=75.87 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+++.|+.|+..|.++++++|+.+..+-.++..+++.+++..|+.-+.++++.+|....+++..|......+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCchhhHhhHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~ 206 (942)
+......|+. +.+...+..|
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHH
Confidence 7777777777 4444444444
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.57 E-value=0.12 Score=52.87 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=64.2
Q ss_pred HhhHHHHHHHcC-CHHHHHHHHHHHHhh----C------CC----CHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 200 RLGIGLCRYKLG-QLGKARQAFQRALQL----D------PE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 200 ~~~la~~~~~~g-~~~~A~~~~~~al~~----~------p~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.+.+|......+ +++.|..+++++++. . |+ ...++..++.++...+......+|...++.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 344444444555 555555555555444 1 11 12346677788888777777888888888877777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
|+.+..+.....+....++.+.+...+.+++...+
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 88777776666666667777777777777776554
No 249
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.56 E-value=0.11 Score=58.75 Aligned_cols=239 Identities=15% Similarity=0.089 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC--c-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--Y-------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
.+......+.......++.+|..+..++...-|. . ....-..+.+....|+++.|.++.+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3444455566666667777777777766554332 1 233344556677778888888888888777665533
Q ss_pred -----HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH-----HHhhhhHHHHHHHhhhhcChhHHHHH--HHHHHH
Q 002286 595 -----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA-----TLSLGNWNYFAALRNEKRAPKLEATH--LEKAKE 662 (942)
Q Consensus 595 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 662 (942)
+...+|.+..-.|++.+|......+.+.....+.+- .+.-+.+ .... |+ +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 566677777778888888877777666543333321 1112222 2222 42 223333
Q ss_pred HHH----HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCch-hHHHHHHHHHHHhcCHHHHHHH
Q 002286 663 LYT----RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMP-DVWINLAHVYFAQGNFALAMKM 736 (942)
Q Consensus 663 ~~~----~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 736 (942)
.|. +-+...|...+.....+.++...-+++.+..-.....+.... .+.+..+ -+++.++.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 332 233444665566555555555444466666655555544321 1111222 2335899999999999999999
Q ss_pred HHHHHhhhCCCC-C----HHHHHHHHHHHHHcccHHHHHHHHHH
Q 002286 737 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (942)
Q Consensus 737 ~~~al~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 775 (942)
...+......+. . ..+..-....|...|+...|..++.+
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999888765442 2 22222333456668999999988877
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.55 E-value=6.4e-05 Score=47.52 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCchHHH
Q 002286 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (942)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (942)
|+++++.+|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 251
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.27 Score=55.99 Aligned_cols=330 Identities=15% Similarity=0.167 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHH
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~ 117 (942)
.+++.--....+++..+-..+-+++|++++-.. +.|+++ ....+.|...-.+..+ ..-..+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--S~Fse~----~nLQnLLiLtAikad~------------trVm~YI 1043 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSEN----RNLQNLLILTAIKADR------------TRVMEYI 1043 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--cccccc----hhhhhhHHHHHhhcCh------------HHHHHHH
Confidence 344444445566777788888888888865432 124432 2222222211111100 1233444
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
++.-..|.. ..|.+....+-|++|...|++.- -+..+...+ .-..++.+.|.++.+++- .+
T Consensus 1044 ~rLdnyDa~------~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1044 NRLDNYDAP------DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred HHhccCCch------hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhhC------Ch
Confidence 443322221 23555556666677766665531 112222111 122344444544444331 14
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+|..+|.+-.+.|...+|++.|-++ +++..+.....+....|. +++-+.++.-+-+... .+.+-..|...
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 55666666666666666666666543 344445555555555555 5555555544433221 11222233334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
|...++..+.+.+.. .|+. .-.-..|.-++..|.|+.|.-+|...-. |..++..+...|+
T Consensus 1176 yAkt~rl~elE~fi~--------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhchHHHHHHHhc--------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHH
Confidence 444444444333321 1211 1223445555555666655555543321 4445556666666
Q ss_pred hHHHHHHHHHHHHhC---------------------C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 358 FRSALTNFEKVLEIY---------------------P----DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~---------------------p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
|..|...-+++-... . -+++-+-.+...|...|-+++-+..++.++.+...+...
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 666665555542110 0 013334455556666677777777777776666666666
Q ss_pred HHHHHHHHhcCCHhHHHHHHH
Q 002286 413 FIDLGELLISSDTGAALDAFK 433 (942)
Q Consensus 413 ~~~la~~~~~~~~~~A~~~~~ 433 (942)
+..+|.+|..-.+++-.+.++
T Consensus 1316 fTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1316 FTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHhcCHHHHHHHHH
Confidence 666666664445555544443
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.49 E-value=0.065 Score=54.72 Aligned_cols=234 Identities=14% Similarity=0.095 Sum_probs=138.4
Q ss_pred HHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCC----cchhHHHHHHH
Q 002286 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW----NKVTVLFNLAR 533 (942)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~la~ 533 (942)
....|+++.|..++.++-.... ...| .-...+++.|.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---------------------------------------~~~~~~~~~La~~~yn~G~ 43 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---------------------------------------SLDPDMAEELARVCYNIGK 43 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---------------------------------------cCCcHHHHHHHHHHHHHHH
Confidence 3567899999999998866320 0122 23567888999
Q ss_pred HHhhcC-CHHHHHHHHHHHHHh----CC------Cc----HHHHHHHHHHHHHcCChh---HHHHHHHHHHhhcCCChhH
Q 002286 534 LLEQIH-DTVAASVLYRLILFK----YQ------DY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 534 ~~~~~g-~~~~A~~~~~~~l~~----~p------~~----~~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~ 595 (942)
.....+ +++.|..+++++... .+ +. ..++..++.++...+.++ +|..+++.+....|+.+.+
T Consensus 44 ~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 44 SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 999999 999999999998876 21 11 446677788888877654 4666666777777888888
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC--CC
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH--TS 673 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~ 673 (942)
+...-.+..+.++.+.+.+.+.+++...+-++...-..+..+.-+.. .....|...+...+... |.
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~------------~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE------------KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh------------hCcHHHHHHHHHHHHHHhCCC
Confidence 87777777778999999999999998765323322222232201111 33455666666655432 33
Q ss_pred CH-HH-HHHHHHHHHhc--CCchHH--HHHHHHHHH---HhcCCCCCC-----chhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002286 674 NL-YA-ANGAGVVLAEK--GQFDVS--KDLFTQVQE---AASGSVFVQ-----MPDVWINLAHVYFAQGNFALAMKMYQN 739 (942)
Q Consensus 674 ~~-~a-~~~la~~~~~~--g~~~~A--~~~~~~~~~---~~p~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (942)
.. +. ..-+..++... ++.... ++....+++ ...+.+... ....+.+.|...++.++|+.|+.+|+-
T Consensus 192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 21 11 11122222222 222222 222222222 111111111 112355667777888888888888887
Q ss_pred HHh
Q 002286 740 CLR 742 (942)
Q Consensus 740 al~ 742 (942)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 764
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.48 E-value=0.046 Score=58.78 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCC-
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHE- 340 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~- 340 (942)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+......|+..+|+..+...+. .......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3344567778888888888888888888887764322 222567778888888888888888888887776 2111100
Q ss_pred chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcCcHHHHH
Q 002286 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAFI 414 (942)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~~ 414 (942)
........+..+.............. ......++..+|...... +..+++...|..+++.+|....+|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 00000000000000000000000000 011234556666666665 6777777777777777777777777
Q ss_pred HHHHHH
Q 002286 415 DLGELL 420 (942)
Q Consensus 415 ~la~~~ 420 (942)
.+|..+
T Consensus 297 ~~a~~~ 302 (352)
T PF02259_consen 297 SWALFN 302 (352)
T ss_pred HHHHHH
Confidence 776654
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0093 Score=58.16 Aligned_cols=152 Identities=18% Similarity=0.073 Sum_probs=96.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
....-+..+.-....|++.+|...|..++...|.+..+...+|.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 44456667778888888888888888888888888888888888888888888887777654332222211110011122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYLANHFFFTG 282 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g 282 (942)
+.+.....+. ..+++.+..+|++.++.+.++..+...|+ .+.|++.+-..++.+-. +..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333322 23445556688888888888888888887 78888777777766532 3344444444444444
No 255
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.66 Score=58.51 Aligned_cols=366 Identities=12% Similarity=0.051 Sum_probs=203.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHH-HHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA-ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
.++|.+-++.|.|..|...++.-..... .++.-. .+..+-.+|...+..+.. .-.... ..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~~-r~ 1447 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSAR-RF 1447 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHHH-hh
Confidence 3788889999999999999998411111 112222 334444477766665521 111111 12
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+| .+......+...|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....++........
T Consensus 1448 a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1448 ADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred cCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 233 5667777888899999999999999999999888888888888999999999887776666555553333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHh--HHHHHHHHHHHHHhCC--------CCHHHHH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALN 272 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~~~~~~p--------~~~~~~~ 272 (942)
--.+-|++++++.-..... ..+-.+..+.. +|.+.......+. ..+.++..+..+ ..| .....+.
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~ 1598 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYE 1598 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHH
Confidence 3344588888877665544 22222222221 4544444332111 112222222211 011 0001111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhhhcH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYGL 348 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~l 348 (942)
.+..... .-+.+.........- ..++...+.+.|-+....-....+..+-+-.++++.-.. .........|+..
T Consensus 1599 ~~~kLH~-l~el~~~~~~l~~~s-~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1599 ILMKLHL-LLELENSIEELKKVS-YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHH-HHHHHHHHHHhhccC-ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 1111110 001111111111100 011111222233333222222223444444555554322 1234556778889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC----------c------HH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PR----------D------AQ 411 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~----------~------~~ 411 (942)
|.+....|+++.|...+-++.+.. -+.+....|......|+...|+..+++.+..+ |+ . ..
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~ 1754 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKK 1754 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhh
Confidence 999999999999998888887765 56788888999999999999999999988653 22 1 12
Q ss_pred HHHHHHHHH-hcCCH--hHHHHHHHHHHHHHHH
Q 002286 412 AFIDLGELL-ISSDT--GAALDAFKTARTLLKK 441 (942)
Q Consensus 412 ~~~~la~~~-~~~~~--~~A~~~~~~a~~~~~~ 441 (942)
+.+.++... ..+++ ..-+.+|..+....+.
T Consensus 1755 ~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1755 AKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 344444444 55553 3456677777777664
No 256
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.001 Score=61.96 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLE--------ADRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
..++-..|+-++..|+|.+|...|..++. ..|.. ...++..+.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45667788999999999999998888763 24443 3456677777788888888888888888
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
...|.+ ..+++..|.+....-+..+|...|.++++++|.-.
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 888877 66677778777777788888888888888877643
No 257
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.019 Score=56.58 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
.+.-+-.-|.-|++.++|..|+..|.+.++.-...++ ...|.+.+-+.+..|+|..|+.-+.+++...|.+...++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4455566688899999999999999999987444444 66677888899999999999999999999999998888888
Q ss_pred HHHH
Q 002286 791 GVAM 794 (942)
Q Consensus 791 a~~~ 794 (942)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 8773
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.0001 Score=46.55 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHH
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (942)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.42 E-value=0.00029 Score=72.85 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
-..+...+..+.|+.|+..|.+++.++|+++..+-..+..+.+.++|..|+.-+.++++.+|.. ...|+..|.+...++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456667777888888888888888888888888888888888888888888888888888888 666888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
.+.+|...|+....+.|+++.+...+..+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888888888888888776666554
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.01 Score=53.97 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (942)
..+...++..+...|++++|...++.++....+..-...+-..++.+++..|.+++|+..++..... .-.+......|.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhh
Confidence 3445667777778888888888888777532222223445667788888888888888777665321 112344566788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 385 IYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 385 ~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
++...|+.++|+..|.+++...++.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCCh
Confidence 8888888888888888888776443
No 261
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0014 Score=60.97 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
..++..-|+-++..|+|.+|...|..|+..-......+......+ ++.+......
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-------------------------~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-------------------------LELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-------------------------HHHHHhhhHH
Confidence 356667788999999999999999998763211111000000000 0022234567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 595 (942)
+.|++.++...|++-++++....++..+|.+..+|++.|......-+..+|..-|.+++.++|.-..+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 78888889889999999999999999999999999999998888888888999999988888865443
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.39 E-value=0.00042 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
.+++.+|.+++..|++++|++.|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666654
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.33 E-value=0.041 Score=57.04 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCchhhHhhHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHH
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~ 235 (942)
....+-.+|....+|+.-+.+.+.+-.. -++. ..+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444445556666666666666554443 1222 4455566666666 6666777766666 3334445666666
Q ss_pred HHHHHHHhh------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 236 ~l~~~~~~~------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
.+|.+|... .+....++|+..|.+++..+|+.- .-.+++.++...|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g 273 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence 666665432 123347788888888888886443 2233333444444
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.064 Score=51.10 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=144.7
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~~~~~l 189 (942)
.|+.+-..++..+|.+-.+|-.+-.++-..+ +..+-++.++.++..+|+|...|...-.+.-..|++. .-+.+.+.++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776655 6788899999999999999999999988888899988 8899999999
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hc--cHHhHHHHHHHHHHHHHhCCC
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-AN--EAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~--~~~~~~~A~~~~~~~~~~~p~ 266 (942)
..+..+ -.+|...--|....+.++.-+.+-.+.++.+-.|-.+|...-.+... .| +....+.-+.+..+.+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 56677788888888899999999999999988877777644322222 11 112356667788888999999
Q ss_pred CHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 002286 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (942)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~a~~~~~~~~ 295 (942)
+..+|+.|..++.. .| .+.+...+.....
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2334444444443
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.011 Score=53.72 Aligned_cols=116 Identities=19% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 256 KMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 256 ~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..++....+|.+. .+...++..+...|++++|+..++.++..+.+....+.+-..++++....|.+++|+..+....
T Consensus 74 ~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 74 AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 3334444444433 4456678888999999999999999988777767777888999999999999999999987654
Q ss_pred HhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
. +.-........|.++...|+-.+|+..|++++...++.
T Consensus 154 ~----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 154 E----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred c----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2 22233345668999999999999999999999987554
No 266
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.32 E-value=0.63 Score=55.08 Aligned_cols=393 Identities=12% Similarity=0.045 Sum_probs=205.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~ 123 (942)
+.+-.++.....|+.|+..+.++..+-| +- .+-.++.+.+|...+...+...+ ...|.+|+..|++.. .
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~ 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFP-----GR-KEGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH-G 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCC-----Cc-ccchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc-C
Confidence 4555677888999999999999877644 22 24456788888888877765533 368999999999875 4
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhCCCCch-
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-----GRYSDSLEFYKRALQVHPSCPG- 197 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~- 197 (942)
.|..|--|++.|.+|-..|++++-++++.-+++..|++|..-...-.+-++. .+-..|+...--++..-|....
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 6788999999999999999999999999999999998876544433333332 2233444444445544444311
Q ss_pred ------------------------------hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 198 ------------------------------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 198 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
...+.+-..|| .|..---...|+++....|- .++...-.+....|..
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 704 (932)
T PRK13184 628 REEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW-SGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNW 704 (932)
T ss_pred hHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH-hcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccH
Confidence 01122222222 33333334555665554432 4444444445555653
Q ss_pred HhHHHHHHHHHHHHHh--CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEI--YPYCA--------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YYNLARSYH 316 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~--~p~~~--------~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~la~~~~ 316 (942)
+-..+....+...+.. .|.+. ..+..-..++.....++++.+.+... ++..... ....+.-..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 778 (932)
T PRK13184 705 EFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT------DPTLILYAFDLFAIQAL 778 (932)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC------CHHHHHHHHHHHHHHHH
Confidence 3333333333332221 11111 11122233344444555555543332 1111111 111111111
Q ss_pred hcCC---HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCC
Q 002286 317 SKGD---YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 317 ~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~ 391 (942)
..++ .-.+++.+.+... ..............+|....++++|-+.+...-. ...+...+....|..+.-.++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (932)
T PRK13184 779 LDEEGESIIQLLQLIYDYVS---EEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTED 855 (932)
T ss_pred HhccchHHHHHHHHHHhccC---ChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCc
Confidence 1122 2222222222211 1111122233345666777777777777643211 123345677777777777777
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
.+-|..+|..+.+-.| .+.++ .+..+ ..|...+...+.++ ..++..+...+.-.|+.++- ..
T Consensus 856 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~ 918 (932)
T PRK13184 856 REAAKAHFSGCREDAL-FPRSL--DGDIFDYLGKISDNLSWWEK-------------KQLLRQKFLYFHCLGDSEER-DK 918 (932)
T ss_pred hhHHHHHHhhcccccc-Ccchh--hccccchhccccccccHHHH-------------HHHHHHHHHHHHHhCChhHh-HH
Confidence 7777777776653211 11222 12222 33333333333222 23344445555566776666 66
Q ss_pred HHHHhh
Q 002286 471 FKDALG 476 (942)
Q Consensus 471 ~~~al~ 476 (942)
|+.+..
T Consensus 919 ~~~~~~ 924 (932)
T PRK13184 919 YRQAYL 924 (932)
T ss_pred HHHHHH
Confidence 666654
No 267
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.32 E-value=0.0066 Score=63.79 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=120.3
Q ss_pred ChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHH--HHHcchhhhh
Q 002286 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (942)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--y~~~g~~~~~ 102 (942)
||+.+..+|...|--.+.+++++.++..+|+...|.+++++++-.- ++. .+...... -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----------e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----------ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHH-HHHHhhhhhcccccCccc--
Confidence 8999999999999999999999999999999999999999986321 000 00000000 01111111
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHhcCC
Q 002286 103 QREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~-~~~~a~~~~~~g~ 177 (942)
.--..+.| -.+++.....+.+.|-+..|.+.++-.++++|. ++.. ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 00001222 235556778889999999999999999999998 6654 4444455577788
Q ss_pred hHHHHHHHHHHHHhCC-C---CchhhHhhHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 002286 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p-~---~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (942)
|+--+.+++....... + ..+..-+..+.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888887655211 1 1234567788888888887 7777777777777664
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.028 Score=54.94 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHH
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 639 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y 639 (942)
+.-+.-+.-....|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-.......... ..+.+.+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~--l~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG--LQAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH--HHHHHHH
Confidence 44455566678889999999999999999999999999999999999999999999986433322211111 1111101
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 002286 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719 (942)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 719 (942)
...+ ....+ ...+.+.+..+|+|..+...+|..+...|+.+.|.+.+-.++..+.+. .+..+.-.
T Consensus 213 l~qa-----------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~ 277 (304)
T COG3118 213 LEQA-----------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKT 277 (304)
T ss_pred HHHH-----------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHH
Confidence 1110 11111 234556677889999999999999999999999999888888876432 44555555
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 002286 720 LAHVYFAQGNFALAMKMY 737 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~ 737 (942)
+-.++...|.-+.+...|
T Consensus 278 lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 278 LLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 555555555333333333
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.29 E-value=0.00053 Score=43.72 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 270
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.26 E-value=0.11 Score=53.75 Aligned_cols=128 Identities=17% Similarity=0.093 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
.+|+...|-.-+..+++..|.+|......+.+....|.|+.|...+..+-..-.....+...+-...+..|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35777788888888999999999999999999999999999999887776554444556666677888999999999998
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.-++...-++ +.+....+...-.+|-+++|...|++.+.++|.....|
T Consensus 381 ~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 381 EMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 8888765555 34344445556678899999999999999988644433
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.24 E-value=0.26 Score=52.86 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHh-hhCCC--
Q 002286 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 747 (942)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~-- 747 (942)
.......+...+.+..+.|+++.|...+.++....+.... ..|.+.+..+..+...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3445667888999999999999999999999886532211 2688999999999999999999999998888 22111
Q ss_pred ----------------------CC-------HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 748 ----------------------TD-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 748 ----------------------~~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
.. ..++..+|...... +..+++.+.|..+.+..|+....++++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 01 44555666666666 77888999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 002286 793 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (942)
Q Consensus 793 ~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 833 (942)
.+.......-..... .++ .....-+..|++.|-+=...+
T Consensus 301 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 301 FNDKLLESDPREKEE-SSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHHhhhhcccc-cch-hHHHHHHHHHHHHHHHHHhhC
Confidence 766665422211111 111 233444555666664444333
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.53 Score=51.39 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=153.2
Q ss_pred eEEEeCCCCCCChhHHHHHHH--------hccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHH
Q 002286 14 EVRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85 (942)
Q Consensus 14 ~~~~~~~~lp~~~~~~~~~l~--------~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (942)
+|++-+..+. |...|++... ++.+.++.|-.+|..-.+.-.++.|...|-+.-. |.+ +..
T Consensus 659 ii~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~G-----ik~ 726 (1189)
T KOG2041|consen 659 IIEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAG-----IKL 726 (1189)
T ss_pred EEEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccc-----hhH
Confidence 4555555544 4445554433 2346678999999999998899999988877543 222 223
Q ss_pred HHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH
Q 002286 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVP 163 (942)
Q Consensus 86 ~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~ 163 (942)
.-.|+.++...-+... ..---|.|++|.+.|-.+.+.| ....++...|+|-...++++..-.-+. .-..
T Consensus 727 vkrl~~i~s~~~q~ae-i~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~ 797 (1189)
T KOG2041|consen 727 VKRLRTIHSKEQQRAE-ISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKED 797 (1189)
T ss_pred HHHhhhhhhHHHHhHh-HhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHH
Confidence 3344444432211110 0112356668888887765543 223456677888776666654321111 1246
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
++..+|..+.....+++|.++|...- -.-+...|++.+.+|++- +.....-|++...+-.+|..+..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHh
Confidence 88889999999999999999987642 133467788888777653 33344567777788888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
.|- -++|.+.|-+. ..|.-. .......+++.+|..+.++.. -|.........+.-+...++.-+
T Consensus 865 vGM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 865 VGM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHH
Confidence 877 77777766442 122111 112233445555555544321 12111222223334445555666
Q ss_pred HHHHHHHH
Q 002286 324 AGLYYMAS 331 (942)
Q Consensus 324 A~~~~~~a 331 (942)
|++.++++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 66655554
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.17 E-value=0.00064 Score=43.33 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=17.4
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3555555555566666666666665555554
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.00093 Score=42.57 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=17.4
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.+++.+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455555555566666666666655555554
No 275
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.68 Score=51.16 Aligned_cols=253 Identities=14% Similarity=0.133 Sum_probs=138.0
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH-HHhhhhhccccch
Q 002286 537 QIHDTVAASVLYRLILFKY--QDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL-SMLGDLELKNDDW 609 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~l~~~~~~~g~~ 609 (942)
..|+..+|.+++.-.+-.. |.. ..+++.+|.++...|+- ..+++...++...+.+..+ ..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577778888777666442 111 45778888888777765 7788877777655333211 1234334444432
Q ss_pred HHHHHHHHHhhc---cCCC-CchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHH
Q 002286 610 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 684 (942)
Q Consensus 610 ~~A~~~~~~~~~---~~~~-~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 684 (942)
. .+.|+++-. .+.. ....+-++||.+ -... . -.+|++ ++.-+-+..-..+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 1 223333322 2211 122344556654 3222 1 223333 2222222222233334556777
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHH--HHHHHHHHHHH
Q 002286 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ--ILLYLARTHYE 762 (942)
Q Consensus 685 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~l~~~~~~ 762 (942)
+...|+-++|-.+.+++..... + .-...-.+.+|..|...|+..--..++.-+++. .+.|+. +-..+|.+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkd-p--ilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~- 584 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKD-P--ILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLF- 584 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCc-h--hhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEe-
Confidence 7888888899999988876331 0 012344678889999999885555555554553 233333 3334444444
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 002286 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (942)
Q Consensus 763 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~ 832 (942)
.+.+....+..-.-+. .|+.++|..|+++. +-+|-.++.+|+.+++-|-.+
T Consensus 585 -~dp~~~~s~V~lLses--~N~HVRyGaA~ALG----------------IaCAGtG~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSES--YNPHVRYGAAMALG----------------IACAGTGLKEAINLLEPLTSD 635 (929)
T ss_pred -cChhhchHHHHHHhhh--cChhhhhhHHHHHh----------------hhhcCCCcHHHHHHHhhhhcC
Confidence 4666666665544433 47889999888755 344455566666666665544
No 276
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.62 Score=49.14 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHH
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
.-..+|+.++...+.+ ...|........+.+.+.+-..+|..++..+|++++.|+.-+...+..+. +++.|...+.+
T Consensus 89 rIv~lyr~at~rf~~D-~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD-VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHHHH
Confidence 4567899999998888 67777777777777779999999999999999999999999987777665 38889999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 002286 260 AFEIYPYCAMALNYLA 275 (942)
Q Consensus 260 ~~~~~p~~~~~~~~la 275 (942)
+++.+|+++..|...-
T Consensus 166 gLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYF 181 (568)
T ss_pred HhhcCCCChHHHHHHH
Confidence 9999999998876543
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.93 E-value=0.0058 Score=50.04 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 002286 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (942)
Q Consensus 46 ~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p 125 (942)
.|..++++|+.-+|+++++..+....+.. ...-++..-|.++..++....+...|.-.+-.++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~------~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE------SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC------chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 57889999999999999999887654321 112355666888888887777777778888888888888888888
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 157 (942)
..+..++.+|.-+-..--|+++....++++..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88778888877777777777777777777654
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.88 E-value=0.074 Score=55.49 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
+.-+.+|++|++.+|++ ..++..+-.+..+..+.+....-|++++..+|++...|...-......-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45567788888888877 66677777777777788888888888888888888777665544433211111555555665
Q ss_pred HHHH
Q 002286 259 RAFE 262 (942)
Q Consensus 259 ~~~~ 262 (942)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5554
No 279
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.053 Score=49.28 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
..+...|......|+...++..+.+++.....+.-..... ..-.......+... ...+...++..
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~ 71 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL------YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3344456667778899999999999987553221111000 00111122222222 24567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc-CCCCCHH
Q 002286 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPIE 449 (942)
Q Consensus 386 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~ 449 (942)
+...|++++|+..+.+++..+|.+..++..+..++ ..|+...|+..|++....+... |..+++.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999 9999999999999998887753 5444443
No 280
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=1.2 Score=50.17 Aligned_cols=260 Identities=12% Similarity=0.018 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH---HcCCHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQA 219 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~ 219 (942)
.-++=+..++.-+..++.+......+..++...|++++-...-..+.+..|.+ +.+|.....-.. ..++...+...
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHHHH
Confidence 33444444555555555556666666666666666666555555555556655 444443332222 12445555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
|++++. +-.++..|...+......+. .+...++++....+|.+++....
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~------------------------------~~~~~~d~k~~R~vf~ral~s~g 221 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGN------------------------------VAKKSEDYKKERSVFERALRSLG 221 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccc------------------------------cccccccchhhhHHHHHHHhhhh
Confidence 555553 23334444444433333222 11223344445555555544322
Q ss_pred CCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh----hhhcHH---HHHHHcCChHHHHHH----
Q 002286 300 HGPT----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLG---QVQLKLGDFRSALTN---- 364 (942)
Q Consensus 300 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~la---~~~~~~g~~~~A~~~---- 364 (942)
..-. ..+.+...-..|...-..++-+.++...+.. |.... .+.... .......+++.|...
T Consensus 222 ~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~ 297 (881)
T KOG0128|consen 222 SHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKI 297 (881)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHH
Confidence 2111 1122333333333333445555555555531 11111 011111 111223344444444
Q ss_pred ---HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHH
Q 002286 365 ---FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 365 ---~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~ 438 (942)
++..+...|.....|..+.......|+...-...+++++.-.+.+...|+..+... ..+-...+...+.+++..
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~ 376 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS 376 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC
Confidence 33334444555556677777777888888888888888888888888888888766 455555555555555443
No 281
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0062 Score=59.80 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
..+-.-|.-|++..+|..|+.+|...++..-.+ ...|...|-+.+..|+|..|+.-+.+++..+|.. .-.++.-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhh
Confidence 344556888888888888888888888764333 4567788888888888888888888888888888 66677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
.|++.+.++.+|..+.+..+..+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888888887665543
No 282
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.81 E-value=0.0027 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
+++.+|.++.+.|++++|+..|++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 283
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.81 E-value=0.016 Score=48.95 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred CchhHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 712 QMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
-.....++++|++.... +..+.|.+++..++..+....-+.+|+|+..+++.|+|+.++++....++..|+|+.+.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35678899999998765 566789999999984323333788999999999999999999999999999999988665
Q ss_pred hHHHHHHHHHH
Q 002286 789 DAGVAMQKFSA 799 (942)
Q Consensus 789 ~la~~~~~~~~ 799 (942)
---.+..++..
T Consensus 110 Lk~~ied~itk 120 (149)
T KOG3364|consen 110 LKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHhh
Confidence 54444444433
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.80 E-value=0.0022 Score=40.47 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
++++++|.++...|++++|+..|+++++.||++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467888888888889999999999988887753
No 285
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.79 E-value=1.3 Score=52.59 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhh
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPY 345 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 345 (942)
..-.++...+.|+.|+..|+++....+.....-++.+..|.....+ | .+++|+.-|++.- ..+..+.-|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHH
Confidence 3456777788899999999998887766666677888888776643 2 4777777777665 557777779
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
.+.|.+|...|++++-++++.-+++.+|.+|..-...-.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9999999999999999999999999999887654443333
No 286
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.35 Score=46.35 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh-HHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG-AALD 430 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~-~A~~ 430 (942)
+...-..|+.+.+.++..+|.+..+|...-.++..++ +..+-++++..++.-+|.+..+|...-.+. ..|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3344455555555555555555555555444444433 445555555555555555555555544444 444444 3333
Q ss_pred HHHHHH
Q 002286 431 AFKTAR 436 (942)
Q Consensus 431 ~~~~a~ 436 (942)
....++
T Consensus 135 f~~~~l 140 (318)
T KOG0530|consen 135 FTKLML 140 (318)
T ss_pred HHHHHH
Confidence 333333
No 287
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.39 Score=46.45 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=80.9
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
...++.-+..+...++........ ....+-..+..++++.|+|.+|+......+..-.
T Consensus 98 ~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK--------------------- 156 (421)
T COG5159 98 SDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK--------------------- 156 (421)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---------------------
Confidence 344555555555555544332110 0124445678889999999999999888776211
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH-----hCCCcHHHH--HHHHHHHHHcC
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAY--LRLAAIAKARN 573 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~--~~l~~~~~~~~ 573 (942)
..+..+.-.+++..-..+|....+..++...+..+-. -+|....+- +.-|...+...
T Consensus 157 ----------------k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 157 ----------------KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred ----------------hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Confidence 1114455666777778888888888887776665543 234332222 22344566778
Q ss_pred ChhHHHHHHHHHHhhc
Q 002286 574 NLQLSIELVNEALKVN 589 (942)
Q Consensus 574 ~~~~A~~~~~~~l~~~ 589 (942)
+|..|..+|-++++-.
T Consensus 221 dyktA~SYF~Ea~Egf 236 (421)
T COG5159 221 DYKTASSYFIEALEGF 236 (421)
T ss_pred cchhHHHHHHHHHhcc
Confidence 8999999998887754
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=1.4 Score=48.86 Aligned_cols=275 Identities=15% Similarity=0.075 Sum_probs=136.0
Q ss_pred HHcCChHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH-HHHHHHH-hcCC
Q 002286 353 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSD 424 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~-~~~~ 424 (942)
+..|+..+|.+.+...+-.. |. ..-+++.+|.++...|+- ..+++...++...+.+..+ ..||.-+ ..|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35788888888888776442 11 234888899998888875 7788877776654332221 1122222 2222
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
.-.+.|++...............+-..+|.+....++.+--.+.+.-+.+
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~E---------------------------- 495 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQE---------------------------- 495 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhh----------------------------
Confidence 22344555544433321111112334445554444443332223333322
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCc-HHHHHHHHHHHHHcCChhHHHHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDY-VDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~-~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..-....--...|..+...|+-++|..+.++++.-. |-- ....+.++..|.-.|+...-..++
T Consensus 496 ---------------TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 496 ---------------TQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ---------------hhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 111122233344556666677778888777776532 211 234456666677777766555554
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh-HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
.-++.--.++..-....+.-+.-..+++....+..-..+.+..+-.| +.+.+|-. +.. .-..+|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa-CAG-------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA-CAG-------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh-hcC-------------CCcHHHH
Confidence 44443333333333333333334445555555555444444332222 33344433 222 2245666
Q ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHHhcC
Q 002286 662 ELYTRVIVQHTSNL---YAANGAGVVLAEKG 689 (942)
Q Consensus 662 ~~~~~~l~~~p~~~---~a~~~la~~~~~~g 689 (942)
.+++.+.. ||.+. .|+..+|.++.++.
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcc
Confidence 66666555 55533 24555555555443
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.69 E-value=0.22 Score=51.68 Aligned_cols=173 Identities=19% Similarity=0.125 Sum_probs=116.2
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc----cc
Q 002286 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----ND 607 (942)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g 607 (942)
...+++..|...+..+-.. ....+...++.++.. ..+..+|..+|..+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777788887776652 223677777777765 34678899999844 446678888999999877 44
Q ss_pred chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 002286 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (942)
Q Consensus 608 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (942)
+..+|...|.++..........+...++.+ |.... .... -..+...|...|.++-... ++.+...+|.+|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~~----~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QALA----VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhhc----ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 899999999999988754223446667776 65541 0000 0033457777777776665 66677777776654
Q ss_pred ----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc
Q 002286 688 ----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (942)
Q Consensus 688 ----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (942)
..++.+|..+|.++.+.. + +...++++ +++..|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 237778888888887765 3 67777777 665555
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.63 E-value=0.29 Score=50.82 Aligned_cols=189 Identities=18% Similarity=0.176 Sum_probs=133.6
Q ss_pred HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc----ccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHh
Q 002286 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644 (942)
Q Consensus 569 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~ 644 (942)
....+++..+...+..+-.. .++.....++.+|.. ..+...|...|..+.... ...+.+.||.+ |.....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~-~~~G~g 124 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLM-YANGRG 124 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHH-HhcCCC
Confidence 34566777888888777652 233566667776654 346888999999665543 55667778888 766421
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG-------QFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 645 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
.. .+..+|..+|.++....-.. ..+...++..+..-+ +...|...|.++-... ++.+
T Consensus 125 -v~-------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a 189 (292)
T COG0790 125 -VP-------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDA 189 (292)
T ss_pred -cc-------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHH
Confidence 11 58899999999999886444 455788888887642 3347899999988864 6889
Q ss_pred HHHHHHHHHHh----cCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHH
Q 002286 717 WINLAHVYFAQ----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE---------------QWQDCKKSLLRAI 777 (942)
Q Consensus 717 ~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~al 777 (942)
.+++|.+|..- .++.+|+.+|.++... .+ ....+.++ +++..| +...|..++..+.
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 99999888653 4899999999999986 22 78888888 777766 5555566665555
Q ss_pred HhCCCC
Q 002286 778 HLAPSN 783 (942)
Q Consensus 778 ~~~p~~ 783 (942)
...+..
T Consensus 265 ~~~~~~ 270 (292)
T COG0790 265 ELGFDN 270 (292)
T ss_pred HcCChh
Confidence 554433
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=3.6 Score=52.44 Aligned_cols=327 Identities=12% Similarity=0.049 Sum_probs=178.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
.++.+-++.+.|..|..++++-. ..+... .....++.+-.+|...++++.-......-. ..+. .......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~s----l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPS----LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCcc----HHHHHHH
Confidence 57888889999999999998862 222222 223445555558888888887766665321 1122 3445566
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHhHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAAL 429 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~ 429 (942)
....|++..|..+|+.+++.+|+....+...-......|.+...+...+-.....++...-+..++.-- ..++++.-.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 777899999999999999999998777777777778888888888877777666666666666665533 556665544
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-----HHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh--
Q 002286 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES-----AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF-- 502 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 502 (942)
.+.. . ++.....+.. +|.+.....+-+. .++..+..+-.+....-.++ .........+..
T Consensus 1539 ~~l~------~--~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~----Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1539 SYLS------D--RNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG----SYVRSYEILMKLHL 1605 (2382)
T ss_pred hhhh------c--ccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc----hHHHHHHHHHHHHH
Confidence 4322 0 0000011110 3333333222111 11111111100000000000 000000000000
Q ss_pred -hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH---HhCC----CcHHHHHHHHHHHHHcCC
Q 002286 503 -KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---FKYQ----DYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 503 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p----~~~~~~~~l~~~~~~~~~ 574 (942)
.+..............+....+..-|.+....-....+..+-+-.+++.+ ..+| ...++|+..|.+....|.
T Consensus 1606 l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1606 LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 00000000000000000111111122222221111122333333333322 2233 337899999999999999
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccC
Q 002286 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 623 (942)
++.|...+-++.+.. -+.+....|..+...|+...|+..++..++..
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999998887766 57788889999999999999999999999654
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.60 E-value=0.072 Score=56.12 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=104.8
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p------------~~---~~~~~~~a 169 (942)
..++.+|.+.++++.++.++..+|+...|.+++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999988888621 11 12 23456667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCC-CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 243 (942)
..+.++|-+..|+++.+-++.++|. +|-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77777777777778888888777777765442111 12334444555555
Q ss_pred hccH------------HhHHHHHHHHHHHHHhCCCC
Q 002286 244 ANEA------------AGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~~~~~~p~~ 267 (942)
.++. ...+.|-..+.+++...|.-
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 5441 11266777777777766643
No 293
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.56 E-value=0.041 Score=49.99 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEADRDN----------------------VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
|......|+...++..+.+++...... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444445556666666666665543221 1223333444444444444444444444444
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (942)
|-+ ..++..+..++...|+...|+..|+++
T Consensus 93 P~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 93 PYD-EEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 444 444444444444444444444444443
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.56 E-value=0.2 Score=47.90 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred CChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cC-cHHHHHHHHHHH-hcCC
Q 002286 356 GDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKID-----PR-DAQAFIDLGELL-ISSD 424 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~-~~~~~~~la~~~-~~~~ 424 (942)
.++++|+..|++++++.+... .++..+..++.++|++++-...|.+++..- .+ .......+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 467778888888887776543 366667777888888887777777766421 11 111222222222 4444
Q ss_pred HhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
.+--...|+..+....+.... .-...-..+|.+++..|+|..-...+++.-..+....-
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG-------------------- 180 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG-------------------- 180 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC--------------------
Confidence 555556666666655543221 11234467899999999998888888777654321000
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH--H----HHHHHHHHHHHcCChhH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--D----AYLRLAAIAKARNNLQL 577 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~----~~~~l~~~~~~~~~~~~ 577 (942)
............++..-..+|..+.+...-..+|++++.+...-+ . ..-.-|.++.+.|.+++
T Consensus 181 -----------edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 181 -----------EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred -----------chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 000001122334555556677777888888888888887543221 1 11222445677788888
Q ss_pred HHHHHHHHHhhcCCCh-----h--HHHHhhhhhcccc
Q 002286 578 SIELVNEALKVNGKYP-----N--ALSMLGDLELKND 607 (942)
Q Consensus 578 A~~~~~~~l~~~p~~~-----~--~~~~l~~~~~~~g 607 (942)
|..-|-++++....+. . -+..+++.+++.|
T Consensus 250 AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 250 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8887777776543221 1 2344555555544
No 295
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.52 E-value=0.0039 Score=61.54 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
.+.-.+..|.++.|++.|..++.++|.....+..++.++...++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 44556667788888888888888888888888888888888888888888888888888888 55566778888888888
Q ss_pred HHHHHHHHHHHhhCCC
Q 002286 214 GKARQAFQRALQLDPE 229 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~ 229 (942)
.+|...+..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 8888888888887643
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.52 E-value=0.0035 Score=40.35 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
+|.+||.+|..+|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777775543
No 297
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=1.1 Score=44.93 Aligned_cols=247 Identities=13% Similarity=0.097 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hC--cCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCC-CHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAK---ID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEV-PIE 449 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~---~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~ 449 (942)
....+|.+|.+.|+.++-.......-. .- +........+...+ ..+..+.-+..+...+++........ ...
T Consensus 50 ~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~ 129 (411)
T KOG1463|consen 50 SILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQS 129 (411)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666666666666554443333221 11 11122222233322 33445555566666666544321110 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
+-..+..+|+..++|.+|+......+..-. ..+..+.-..+..
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElK-------------------------------------KlDDK~lLvev~l 172 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELK-------------------------------------KLDDKILLVEVHL 172 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------------------------------------hcccccceeeehh
Confidence 445678899999999999999888776211 0113344555666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh-----CCCcH--HHHHHHHHHHHHcCChhHHHHHHHHHHhhcC---CChhHHHH-
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFK-----YQDYV--DAYLRLAAIAKARNNLQLSIELVNEALKVNG---KYPNALSM- 598 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~- 598 (942)
.-..+|....+..+|...+..+-.. .|... ..-+.-|.++....+|..|..+|-++++-+. +++.+...
T Consensus 173 lESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sL 252 (411)
T KOG1463|consen 173 LESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSL 252 (411)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHH
Confidence 6677888888888888877766542 12221 2223335556667899999999999887542 22333322
Q ss_pred --hhhhhccccchHH--HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 599 --LGDLELKNDDWVK--AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 599 --l~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+-.+-...+..++ ++-.-+.+++ +.+++..+...++.. +.+. .-.+|..|+..|..-+..||-
T Consensus 253 KYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~AmkavAeA-~~nR----------SLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 253 KYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAMKAVAEA-FGNR----------SLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHHHHHHHH-hcCC----------cHHHHHHHHHHhHHHHhcChH
Confidence 2222223344433 3333344445 455567776666655 3322 117889999999888877764
No 298
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.44 E-value=0.007 Score=59.84 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
+++|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+..+.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 44777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCC
Q 002286 190 QVHPS 194 (942)
Q Consensus 190 ~~~p~ 194 (942)
+++-+
T Consensus 210 kld~d 214 (377)
T KOG1308|consen 210 KLDYD 214 (377)
T ss_pred hcccc
Confidence 66543
No 299
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.43 E-value=0.0057 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555554
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.39 E-value=1.6 Score=45.67 Aligned_cols=128 Identities=14% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
....|+.-.|-.-+..++...|..|......+.+....|+|+.|...+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4456788888888888888888888888888899999999999988877655443332 222333556667788888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHH
Q 002286 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (942)
Q Consensus 218 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 269 (942)
..-.-.+...-.+++....-+......|- ++++...+++.+.++|....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhcc
Confidence 88888777666666665544444444454 88888888888888876543
No 301
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.37 E-value=2.5 Score=47.79 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
..+..+.......|++..-...+++++...+.+...|+..+...- ..+-...+...+.+++...|-...+|...-..+.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 344444455555666666666666666666666666666554432 2333334444555555555544444433222222
Q ss_pred cccch-HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHh-hhhc----ChhHHHHHHHHHHHHHHHHHhcC-CCCHHH
Q 002286 605 KNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALR-NEKR----APKLEATHLEKAKELYTRVIVQH-TSNLYA 677 (942)
Q Consensus 605 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~-~~~~----~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a 677 (942)
+.+.. ..-...+.+.+... +.+.+- |+.-.+ .... .-..-+..+..|...+....... -.....
T Consensus 393 R~re~~~vI~~~l~~~ls~~--------~~l~~~-~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~ 463 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMT--------VELHND-YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEV 463 (881)
T ss_pred hcCcchhhHHHHHHHHHHHH--------HHHHHH-HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 22211 11111222221110 001111 111100 0000 00012356777777776665542 112234
Q ss_pred HHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHH
Q 002286 678 ANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (942)
Q Consensus 678 ~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 755 (942)
+...|.+.+ -.++.+.|+.+.+.+.....+ .....|+.....-...|+...|..++..|+..-..+.+ -.++..
T Consensus 464 ~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~ 539 (881)
T KOG0128|consen 464 LQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEF 539 (881)
T ss_pred HHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHH
Confidence 455566655 457888999888888765431 22337888888888889999999999988886444443 455555
Q ss_pred HHHHHHHcccHHHHHHHH
Q 002286 756 LARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~ 773 (942)
+-+.....|.++.+....
T Consensus 540 ~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 540 FRRFEREYGTLESFDLCP 557 (881)
T ss_pred HHHHHhccccHHHHhhhH
Confidence 556666667766655443
No 302
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.34 E-value=0.023 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+.++.++.++++.|++++|+++.+.+++..|+|..+.--...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678999999999999999999999999999998766544443
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.34 E-value=0.0062 Score=38.67 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666653
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.052 Score=48.30 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++....+-...++.+++..++..+--+.|..+..-..-|.++...|+|.+|+.+++.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3455666677777888888888888888889888888888999999999999999998887777777 666777888888
Q ss_pred HcCCHH
Q 002286 209 KLGQLG 214 (942)
Q Consensus 209 ~~g~~~ 214 (942)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888765
No 305
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.18 E-value=0.43 Score=49.80 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h---cCCHhHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 433 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 433 (942)
.+.-+.+|+++++.+|++...+..+-.+..+..+.++....+++++..+|+++..|..+-... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998877755 2 235778889999
Q ss_pred HHHHHHHHcCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 434 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 434 ~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
+++.......... -..++..+.....+.|-.+.|+..++..++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888776543221 12556677778889999999999999999864
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.24 Score=44.10 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 002286 655 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (942)
+..++|+..|..+-+.+-. -+.+....+.+..+.|+...|+..|..+-...|-+ .+....+...-+..+...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHHHhccccHHH
Confidence 6677888888777665544 34466777889999999999999999997765311 11122345566788889999988
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
-..-.+..-. ..++-...+.-.||.+-++.|++..|+++|..+.. +.+.|.-.-+-+.++.
T Consensus 151 V~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 151 VSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 7766554332 22333377888999999999999999999999776 4444554445555433
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=3.1 Score=45.85 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (942)
+++|...|-.+-+. + .-...+...|+|-.+.++++.--. ..++.....++..+|..+..+..+++|.++|.
T Consensus 750 feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777543221 1 123455667788777777664322 12334456789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
..-. .-+++.+++....|++-. .+...-|++...+-.+|..+...|.-++|.+.|-+.- .|..
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka 883 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA 883 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH
Confidence 7642 224567777777776543 3444459999999999999999999999998886531 2321
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
+ +..+-..+++.+|.+..++.. -+.-..+....+.-+...++.-+|++..+++
T Consensus 884 A-----v~tCv~LnQW~~avelaq~~~-------l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 884 A-----VHTCVELNQWGEAVELAQRFQ-------LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 122225566777666544321 1111123333344556677788888877776
No 308
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.06 E-value=0.81 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (942)
+++..++..-|.+. -|+++...+|
T Consensus 750 FGlTKVFFr~GKFa----EFDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFA----EFDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchH----HHHHHHhcCH
Confidence 34455555666654 3666666555
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.96 E-value=0.076 Score=51.12 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=64.7
Q ss_pred cCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHH-------HHHHHHHHHHhhhCCCCC----HHHHH
Q 002286 688 KGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFA-------LAMKMYQNCLRKFYYNTD----AQILL 754 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~~~~----~~~~~ 754 (942)
...+++|+..|.-++-... +......+.++..+||+|...|+.+ .|.+.|++++.....+.. ..+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3455666666655544321 0001134667888999999999844 566666666655433221 67889
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
.+|.+.++.|++++|+++|.+++...-.+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998875443
No 310
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.9 Score=48.67 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 146 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
...+.+.......|+++...+..|..+...|+.+.|+..++..+. +.. ..-.++.+|.++..+.++..|...+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444556788877778888888888887777777776665 221 123456677777777888888888887
Q ss_pred HHhhCCCCHHHHHHHH
Q 002286 223 ALQLDPENVEALVALA 238 (942)
Q Consensus 223 al~~~p~~~~~~~~l~ 238 (942)
....+.-..-.+..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 7766544333333333
No 311
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.13 Score=56.35 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002286 870 EQQNRQRQEAARQAAL 885 (942)
Q Consensus 870 e~~~~~~~~~~~~~~~ 885 (942)
++++|+++|.+||...
T Consensus 356 ekkererqEqErk~ql 371 (1118)
T KOG1029|consen 356 EKKERERQEQERKAQL 371 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 312
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=2.4 Score=42.48 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=84.7
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cc--hh
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEI----YPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG--PT--KS 305 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~--~~--~~ 305 (942)
.+..+|...++ |.+|+......++- +.. -..+...-...|+...+..+|...+..+....+.- |. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 44555555555 66666655544432 211 12344444566666666666666665554332211 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh---hhcHHHHHHHcCChHHHHHH--HHHHHHhCCCcHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN--FEKVLEIYPDNCETLK 380 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~--~~~~l~~~p~~~~~~~ 380 (942)
..-..-|..+....+|..|..+|-++.+.+..-.+.+.+ +-.+..+-+..+..++--.. -..+++......+++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 222333555555567777777777777644332222222 22223333444444443333 2334444455566666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCc
Q 002286 381 ALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (942)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~~~~~l~~~p 407 (942)
..+..+.+. .+|+.|+..|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666666543 466666666666555544
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.77 E-value=0.044 Score=38.60 Aligned_cols=42 Identities=21% Similarity=0.069 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 171 (942)
.++.+|..+++.|+|++|..+.+.+++.+|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467778888888888888888888888888887776555443
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.62 E-value=0.17 Score=45.09 Aligned_cols=83 Identities=14% Similarity=0.025 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+.+..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+..== .+-..+++
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~~A~evle 105 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-RYADEVLE 105 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-HHHHHHHh
Confidence 38888888888889999999999999999999999999999999999999999999999999988875421 12334444
Q ss_pred hCCC
Q 002286 191 VHPS 194 (942)
Q Consensus 191 ~~p~ 194 (942)
..++
T Consensus 106 ~~~d 109 (160)
T PF09613_consen 106 SGAD 109 (160)
T ss_pred cCCC
Confidence 4443
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.61 E-value=0.14 Score=41.36 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chhhHhhHHHHHHHcCC
Q 002286 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 148 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~~~~~~g~ 212 (942)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|+. ....+-.+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555556666666666666666666666666666666666655544 23334444444444444
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.54 E-value=0.17 Score=41.65 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002286 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (942)
Q Consensus 253 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~ 296 (942)
+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34444444444555555555555554444455555555554443
No 317
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=1.2 Score=47.89 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhh------------cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 002286 109 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 157 (942)
Q Consensus 109 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------- 157 (942)
-|.+|...|.-+.. ..|.+.+.++.++.+...+|+.+-|.....+++-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 45566666655543 35777889999999999999998887777776531
Q ss_pred --CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhhHhhHHHHHHHcCCHHHHHHHHHHH-----Hhh
Q 002286 158 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 226 (942)
Q Consensus 158 --~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~ 226 (942)
.|.|- .+++.....+.+.|-+..|.++++-++.++|. +|-.+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 12232 23444455667789999999999999999998 65565665655666677777666666655 223
Q ss_pred CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 227 ~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
-|+ ...-..++..++.......-..|...+.+|+...|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 343 334456667777766655577888889999888874
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=2.7 Score=40.99 Aligned_cols=164 Identities=17% Similarity=0.123 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhh-
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~- 345 (942)
..++..++..|.|.+|+.+....+. ..++.+.....+..-..+|+...+..++...+..+-...+ -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999998887763 3445566677788888889988888888877776653211 112222221
Q ss_pred -hcHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHH---HHHHHHHHcCCHHHHHHHHH--HHHH-hCcCcHHHHHH
Q 002286 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLK---ALGHIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (942)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~---~la~~~~~~g~~~~A~~~~~--~~l~-~~p~~~~~~~~ 415 (942)
..-|.......+|..|..+|-.+++-.. .+..+.. .+-..-...+..++....+. ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2224455667789999999988887543 2333332 22222233344444433332 2222 23445667777
Q ss_pred HHHHH---hcCCHhHHHHHHHHH
Q 002286 416 LGELL---ISSDTGAALDAFKTA 435 (942)
Q Consensus 416 la~~~---~~~~~~~A~~~~~~a 435 (942)
.+..+ ...+|..|+..|..-
T Consensus 289 vaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHH
Confidence 77777 344666776666543
No 319
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.38 E-value=0.028 Score=36.12 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
++..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 320
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.34 E-value=0.29 Score=41.65 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHH-hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
.....+.+|.++.... +..+.+.+++..++ ..|.......+.++..++++++|++++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566777888887664 46678889998886 5676667777889999999999999999999999999998887554
Q ss_pred HHH
Q 002286 237 LAV 239 (942)
Q Consensus 237 l~~ 239 (942)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.25 E-value=3.1 Score=40.17 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=130.6
Q ss_pred cCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcC
Q 002286 389 LGQIEKAQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKG 462 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g 462 (942)
..+.++|+..|++++++.|.-. .++-.+..+. ..+++++-...|.+.+......-.. .+....+.+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3578999999999999987653 3455566677 8999999999999988776553211 12233344433333444
Q ss_pred CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHH
Q 002286 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (942)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (942)
+.+--..+|+..++.-. + .........+...+|.+|...|.+.
T Consensus 120 ~m~LLQ~FYeTTL~ALk---------------------------------d----AKNeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALK---------------------------------D----AKNERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHHHH---------------------------------h----hhcceeeeeccchHhhhheeHHHHH
Confidence 44444455554443100 0 0011122334456899999999999
Q ss_pred HHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC--hhH----HHHhhhhhc
Q 002286 543 AASVLYRLILFKYQDY------------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PNA----LSMLGDLEL 604 (942)
Q Consensus 543 ~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~----~~~l~~~~~ 604 (942)
.-.++++++-..+... .+.|..-..+|..+++...-..+|++++.+...- |.+ .-.=|..++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 8888888776543221 4556666677888888888888999998876433 332 223456688
Q ss_pred cccchHHHHHHHHHhhccCCC
Q 002286 605 KNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+.|+|++|-..|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 889999999988888887654
No 322
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.20 E-value=5.2 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRL 550 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (942)
.+.+++..|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 445666666666666666666665544
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=2.2 Score=38.33 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=56.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHHHHc
Q 002286 136 QLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKL 210 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~ 210 (942)
.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-...|.. ....++.-+.++...
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 33444455555555555554433222 2344555555555566666666665555443322 122344445555555
Q ss_pred CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 211 GQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 211 g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
|-|+.-..-.+-.- .-+|-...+.-.||....+.|+ +.+|...|..+.
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia 194 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIA 194 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHH
Confidence 55554443333211 1122233344444444444554 555555554443
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=0.67 Score=40.60 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
++......+..++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+.+++.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444455557888888888888888888888888888888888888888888888888776666 55566788888888
Q ss_pred CCHH
Q 002286 211 GQLG 214 (942)
Q Consensus 211 g~~~ 214 (942)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7754
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.96 E-value=0.22 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYS 179 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~ 179 (942)
.+..+.+.+..+|++..+.+.+|..++..|++++|++.+-.+++.+|+. ..+.-.+-.++-..|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566788889999999999999999999999999999999999998765 444444444444444433
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.91 E-value=0.54 Score=45.36 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=60.0
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.+++|+..|.-++-...-.+.... ..++..+|++|...|+.+....++++|+....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~---------------------- 149 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE---------------------- 149 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH----------------------
Confidence 445555555554444332222211 45677778888888886666666666554211
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
............-+...+.+.+|.+..+.|++++|..+|.+++....
T Consensus 150 --------~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 150 --------EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred --------HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 00000000001223567888899999999999999999999887443
No 327
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=7.1 Score=42.19 Aligned_cols=252 Identities=17% Similarity=0.107 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 251 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
....+.+.......|+++.-....+..+...|+.+.|+..++..+. ..-.......++.+|.++....+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566666677888888888888888888886667777776654 111122344567777778888888888888887
Q ss_pred HHHhcCCCCCchhh-hhcHH-HHHHH--------cCChHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 331 SVKEINKPHEFIFP-YYGLG-QVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 331 a~~~~~~~~~~~~~-~~~la-~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
..+. .+...+ |..++ .++.. .|+-+.|-.+++.. +...|.+..+-. .-..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHH
Confidence 7752 222222 22222 33321 22333333333322 222222211100 00111111
Q ss_pred HHHHHHHhCcCcHH--HHHHHHHHH---hcCCHhHHHHHHHHHHHH--HHHcCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 002286 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTL--LKKAGEEVPI--EVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 398 ~~~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~ 468 (942)
.-.+.- .++..+. .+..++.++ .....++.. ++... .+... +.+. -.+..+|.++...|+...|.
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~ 469 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAP 469 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 111110 1111111 234455444 222222222 22211 12222 2222 34556799999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCC-HHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 547 (942)
.+|...++.... ........|.++|.+|.++...|. ..++..+
T Consensus 470 ~~f~i~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~ 513 (546)
T KOG3783|consen 470 KCFKIQVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARAL 513 (546)
T ss_pred HHHHHHHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHH
Confidence 999998863110 001334567899999999999988 9999999
Q ss_pred HHHHHHhCCCc
Q 002286 548 YRLILFKYQDY 558 (942)
Q Consensus 548 ~~~~l~~~p~~ 558 (942)
+.++-....++
T Consensus 514 L~kAr~~~~dY 524 (546)
T KOG3783|consen 514 LLKAREYASDY 524 (546)
T ss_pred HHHHHhhcccc
Confidence 99988766555
No 328
>PRK10941 hypothetical protein; Provisional
Probab=94.79 E-value=0.23 Score=49.57 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
.|+.+.+.++..+|+++.-+--+|.+|.+.|.+..|...++..+...|+++.+-..
T Consensus 199 ~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 199 LALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 45555555555555555444445555555555555555555555555544444333
No 329
>PRK10941 hypothetical protein; Provisional
Probab=94.70 E-value=0.24 Score=49.42 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.3
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
..++-.++...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999999988766555543
No 330
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.63 E-value=0.14 Score=49.77 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=32.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
....|+.++|..+|+.++...|+++.++...|...-..++.-+|-.+|-+++..+|.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3445555555555555555555555555555555555555555555555555555554
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.60 E-value=0.96 Score=37.54 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC----CCC--
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD-- 749 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~-- 749 (942)
.-....|-|++|...+.++.+.....+.. .+.-++-.|+..+..+|+|++++..-+.+|..|.. ..|
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 33445677788888888777765321110 13445667788899999999999999998876632 233
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 750 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 750 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
..+.+..+.++...|+.++|++.|+.+-++
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445577788889999999999999887664
No 332
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.47 E-value=0.11 Score=50.64 Aligned_cols=63 Identities=32% Similarity=0.344 Sum_probs=34.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
...|+.++|...|+.++.+.|++++++..+|.+....++ .-+|-.+|-+++.++|.+..++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCchHHHhh
Confidence 345555555555555555555555555555555554444 555555555555555555544443
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.38 E-value=0.55 Score=41.10 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
.++..++.-+--..|+.+..-+.-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+.
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 37888888887888999999999999999999999999999999988888888889999999888874
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.10 E-value=0.31 Score=45.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.++..+|..|...|+.+.|.+.|.++...........+.++.+.++....|++.....+..++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666665554444444455666666666666666666666666554
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.94 E-value=3.2 Score=34.59 Aligned_cols=89 Identities=25% Similarity=0.178 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHHHHhC---c---------CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC------HH
Q 002286 389 LGQIEKAQELLRKAAKID---P---------RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP------IE 449 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~---p---------~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~ 449 (942)
-|-+++|...+.+++... | -+...+..|+..+ ..|+|++++.....++..+...+.-.. ..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 356666666666665542 1 1244566666677 777777777777777777766544322 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+.++.+..+...|..++|+..|+.+-..
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566688888999999999999988763
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.73 E-value=0.11 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.+++++|.++...|+++.|+..|+.+++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35566666666666666666666666654
No 337
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.71 E-value=8.3 Score=38.54 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+.+...-++..+...-+..-..+++++|.+..++..|+.-.... ..+|...++++++...... ........
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44556667777777778888889999999999988888655444 7778888888776532111 11111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|...+|.. + .+......+-..++.+..++|+..+|++.++...+.++. ......+-++...+....-|..
T Consensus 259 ~~~~~da~~------r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------R--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------h--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0 011112233456788888889999999999888764321 1112223344455555444444
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHH-------------HcCC---HHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 361 ALTNFEKVLEIY-PDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 361 A~~~~~~~l~~~-p~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
....+-+.-++. |......+.-+.+-. +.|- --.|++.+.++++.+|.-+..+..+-
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 333333322221 333322222221111 1121 12466777777777777766555443
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.68 E-value=0.12 Score=31.83 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 159 (942)
+++.+|.++...|+++.|+..|..+++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.63 E-value=17 Score=41.97 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=113.4
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 421 (942)
.++..-....+.+.|...+.+.....+-+. .+...+|.-....+...+|...+..+..... +.........+- .
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHH
Confidence 344445567778888888887655443322 2334444444443335677777776553322 222233333333 7
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.++++.....+..+-.... ......+-+|..+...|+.++|..+|+++......-+.+. ... +.
T Consensus 325 ~~dw~~~~~~i~~L~~~~~-----~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LA---------a~~--Lg 388 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVA---------AQR--LG 388 (644)
T ss_pred ccCHHHHHHHHHhcCHhhc-----cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHH---------HHH--cC
Confidence 7888877666666422221 2467888889998889999999999999855211000000 000 00
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
....+ ....................+..+...|....|...+..++.. .+......++.+....|.++.++..
T Consensus 389 -~~~~~----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 389 -EEYPL----KIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred -CCCCC----CCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000 0000000000001112344566666777777777777766654 2245566666777777777777665
Q ss_pred HH
Q 002286 582 VN 583 (942)
Q Consensus 582 ~~ 583 (942)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 54
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.59 E-value=0.8 Score=42.78 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH----H
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 751 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~ 751 (942)
.++..+|..|.+.|+++.|+..|.++++..... ....++++++..+.+..|++.....+..++-.......+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 467899999999999999999999999876321 1356788899999999999999999999987765454442 3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
....-|..+...|+|.+|-+.|-.+..-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 4455677788899999999998777655543
No 341
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=13 Score=40.44 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----------------
Q 002286 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (942)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---------------- 589 (942)
...|++|...|.-+... +|-..+.++.++.+...+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44566777777766653 35558899999999999999999888887775321
Q ss_pred -----CCChh---HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
|.+-. +++.....+.+.|=|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556789999999999999999999899988888888 54442 6677777
Q ss_pred HHHHHH-----HhcCCCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 002286 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (942)
Q Consensus 662 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 706 (942)
++++.. +..-|+-.+. ..+|..|.+... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 776655 3344554432 345566665544 5678888888888775
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.18 E-value=20 Score=41.43 Aligned_cols=382 Identities=9% Similarity=-0.030 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.-|...++.|++..+..+.....+ .|.. ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d-~pL~-------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKD-YPLY-------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccC-CCcH-------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 4678899999999999999988887632 2211 11122221111111 011234445
Q ss_pred hhcCCCCcchHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 121 SRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
+..+|+.|..-..+..... ..+++..-+.++ ...|.+.......+......|+-++|.....++-...... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 5667777766665554433 344555444422 2347777776777777888898888877777665544332 1
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHH-----------Hhh-ccHHhHHHHHHHHHHHHHhC
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRA-LQLDPENVEALVALAVMD-----------LQA-NEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~-----------~~~-~~~~~~~~A~~~~~~~~~~~ 264 (942)
...-.+-..+...|...... +++++ +.+..++......+.... ... .+ ...... .+...
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~----~~~~~ 235 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVET----FARTT 235 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHH----Hhhcc
Confidence 11222222222223222221 11111 111111111111111111 000 00 111111 11111
Q ss_pred -CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc
Q 002286 265 -PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (942)
Q Consensus 265 -p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 341 (942)
|... .....++..-....+.+.|...+.......... .....++..+|......+...+|..++..+... ...
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~ 311 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQS 311 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCC
Confidence 1111 111222333334556666777776553322211 112233344444444433245566666554421 111
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----------
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----------- 410 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------- 410 (942)
....-....+.+..++++.+...+..+-..........+.+|..+...|+.++|...|.++... .+.
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa~~Lg~ 389 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAAQRLGE 389 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHHHHcCC
Confidence 1122222334446677776666666654333345567777777777777777777777776431 110
Q ss_pred ------------------HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 411 ------------------QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (942)
Q Consensus 411 ------------------~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (942)
......+..+ ..|....|...+..+... .++.-...++.+....|.++.++...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-------~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 390 EYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-------RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred CCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0112222333 556666665555544432 12344555666666777777766655
Q ss_pred HH
Q 002286 472 KD 473 (942)
Q Consensus 472 ~~ 473 (942)
..
T Consensus 463 ~~ 464 (644)
T PRK11619 463 IA 464 (644)
T ss_pred hh
Confidence 43
No 343
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=16 Score=39.69 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHhccCChH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----cchhhhhhhHHHHHHHHHHHHHHHHHc
Q 002286 23 PRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYL 96 (942)
Q Consensus 23 p~~~~~~~~~l~~~~~~~~--~~~~~a~~y~~~g~~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~y~~~ 96 (942)
.+|...+.-+-....-++. +-+-+...||..|.|++|+..--.+-.. +...++..-.+..+.++.-...-....
T Consensus 40 sddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~ 119 (926)
T COG5116 40 SDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIG 119 (926)
T ss_pred hchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhC
Confidence 3333333333333344444 6678889999999999999986655442 111222222334445544333333333
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 002286 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFN 174 (942)
Q Consensus 97 g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~ 174 (942)
|....-.. .-.-.++.+....-.+...-+.+|.... |-. +...+.+++...+. ...++.++.....
T Consensus 120 ~~~d~iD~-------~l~~v~e~i~~kc~~~se~~~~lgIa~e--g~r---ldiie~~l~~~~d~di~~ylL~Lait~v~ 187 (926)
T COG5116 120 GDKDIIDR-------ILDFVLEVIGAKCVDDSEIGYLLGIAAE--GLR---LDIIEKYLSDGNDCDIINYLLDLAITLVE 187 (926)
T ss_pred CCcccchH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHH---HHHHHHHHhCCCcccHHHHHHHHHHHHhh
Confidence 33111100 1112222222222222233333333322 111 23344444433221 2345555555544
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
...+.. +++....+..|..+..-++..+.|+..+++.+.|...+++..+.+.
T Consensus 188 ~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 188 EEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 433333 3566667777776444477889999999999999999999877543
No 344
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.92 E-value=8.7 Score=42.18 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
-|-.+|...+..=+++-|.+.|.++-.. .....+--..+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4666666666666777777777665211 011112234456666666777777766654
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.88 E-value=0.68 Score=37.93 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=46.4
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.+.|++..|++.+.+..+....+.... ...+..++|.++...|++++|+..++++++......|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 357888888888888777664332211 2456778888888888888888888888887766666
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.86 E-value=0.16 Score=47.50 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=32.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 172 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
....++.+.|.+.|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555 4445555555555555555555555555555543
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.73 E-value=0.7 Score=35.29 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
..-|--++...+..+|+..++.++++.+++++ -.++-++..+|...|++.+.+++...=+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454466788899999999999999777666 67888899999999999998877644443
No 348
>PRK12798 chemotaxis protein; Reviewed
Probab=92.72 E-value=15 Score=38.71 Aligned_cols=190 Identities=14% Similarity=0.019 Sum_probs=114.9
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCC
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 672 (942)
.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|+.+|+.+--.-|
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLlaP 179 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLAP 179 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhCC
Confidence 33444445555567777777777776554443333333433333322222 678888888888888888
Q ss_pred CCHH--HHH-HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 673 SNLY--AAN-GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 673 ~~~~--a~~-~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.... +.. .-..+....|+.+++..+-.+....+..|++..+..-. +...+...++-. -...+..++..++....
T Consensus 180 GTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~--F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q 256 (421)
T PRK12798 180 GTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQR--FVDLVVRLDDEI-RDARLVEILSFMDPERQ 256 (421)
T ss_pred chHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHH--HHHHHHhccccc-cHHHHHHHHHhcCchhH
Confidence 7543 333 33444467889999888888888888766554333333 333333333221 22336666776544444
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHH
Q 002286 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 798 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 798 (942)
..+|..+++.-.-.|+.+-|.-.-.+++.+.+. ...-.-.+..|+-.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa 304 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAA 304 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHH
Confidence 778888888888899999999888998888743 233333444454444
No 349
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.62 E-value=12 Score=37.42 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC---HHH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---AQI 752 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 752 (942)
+.-..++.+-.+.|+..+|.+.|+...+..|-. ..-.++.|+...++...-|.+- +.++.+|.+-.. +.+
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNLiEalLE~QAYADv----qavLakYDdislPkSA~i 348 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENLLEALLELQAYADV----QAVLAKYDDISLPKSAAI 348 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccccCcchHHH
Confidence 334456666667777777777777766655411 2334555665555554444332 233333322111 111
Q ss_pred HHHHHH-------------HHHHccc---HHHHHHHHHHHHHhCCCChhhH
Q 002286 753 LLYLAR-------------THYEAEQ---WQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 753 ~~~l~~-------------~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 787 (942)
-|.-+. +-.+.|- -..|++...++++.+|.-|...
T Consensus 349 cYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 349 CYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 111111 1122232 1258888999999999876543
No 350
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=92.56 E-value=1.1 Score=47.58 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 845 INTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA 886 (942)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 886 (942)
+....+.|..+..+.+..-++..+.|++.++.+|+.|+++.+
T Consensus 202 i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~ 243 (591)
T KOG2412|consen 202 IQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDE 243 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333444554444443333333444455555555555555444
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=24 Score=40.54 Aligned_cols=248 Identities=13% Similarity=0.085 Sum_probs=137.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 353 (942)
....++.+..|.-|+.+.+.--. +.....+.....|..++..|++++|...|-+.+... .|..+. .-+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi------~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVI------KKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHH------HHhc
Confidence 34556677777777777665321 123345678888999999999999999999988532 122221 2233
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHhcCCHhHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFIDLGELLISSDTGAALD 430 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~A~~ 430 (942)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.+..++ .+.-. +.-..+-.++..+-.+.|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 444455556677777766555556666778899999998875554443 33110 01111111113333333332
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhh
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (942)
...+. +. +. ..+-.++...|+|++|+.++...--
T Consensus 485 LA~k~-------~~--he---~vl~ille~~~ny~eAl~yi~slp~---------------------------------- 518 (933)
T KOG2114|consen 485 LATKF-------KK--HE---WVLDILLEDLHNYEEALRYISSLPI---------------------------------- 518 (933)
T ss_pred HHHHh-------cc--CH---HHHHHHHHHhcCHHHHHHHHhcCCH----------------------------------
Confidence 22221 11 11 2234567788999999999876421
Q ss_pred hccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-CCCc-HHH----HHHHHHHHHHcCChhHHHHHHHH
Q 002286 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VDA----YLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~~----~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
+.........|+.+.. ..+++-..++-+.... ++.. ... ....-.+..-.+++..-..+++.
T Consensus 519 -----------~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 519 -----------SELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred -----------HHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 2233455556666665 3455555554444432 2111 000 01122334445677777777777
Q ss_pred HHhhcCCChh
Q 002286 585 ALKVNGKYPN 594 (942)
Q Consensus 585 ~l~~~p~~~~ 594 (942)
..+..|+.++
T Consensus 587 ~~E~s~~s~e 596 (933)
T KOG2114|consen 587 MSEISPDSEE 596 (933)
T ss_pred HHhcCCCchh
Confidence 7777777665
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.45 E-value=0.42 Score=46.88 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 152 ~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.++....|+++..|...+.-....|-|.+--.+|.+++..+|.+ .++|.. -+.-+...++++.++..|.+++..+|++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 33444567788888888877778888888888899999999988 666655 5666777889999999999999999998
Q ss_pred HHHHHHHHHH
Q 002286 231 VEALVALAVM 240 (942)
Q Consensus 231 ~~~~~~l~~~ 240 (942)
+..|...-.+
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 8887665543
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.05 E-value=0.32 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=42.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556677777777777777777777777777777777777777777777777777766
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=2.5 Score=45.90 Aligned_cols=128 Identities=23% Similarity=0.170 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-H
Q 002286 112 LATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-~ 188 (942)
-++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++......|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35556666666788888775544 67777778888999999999999999999999999988888777777666655 7
Q ss_pred HHhCCCCchhh------HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 189 LQVHPSCPGAI------RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 189 l~~~p~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
....|.+ ... ++.++.....+|+..++....+++....|.++.....+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7777777 222 23358888888999999999999999999987766555544
No 355
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.89 E-value=0.99 Score=53.86 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=5.3
Q ss_pred HHhhhhhhhhc
Q 002286 922 RVKARIFYICS 932 (942)
Q Consensus 922 ~~~~~~~~~~~ 932 (942)
+.+..|.-+..
T Consensus 525 r~~~~~~~~~~ 535 (1021)
T PTZ00266 525 RNSYFLKGMEN 535 (1021)
T ss_pred hhhhhhhhccc
Confidence 44555555443
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=25 Score=38.90 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
.++.+-|.-..+..+|..++++|...+.-.|.+ +.....++.+|....+.+.|.+++.++-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
-.+....|.-++|+...........+....+......- +.+.--+.++....-.+..++.+-.
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~-----------------~~PTt~lsv~~~l~~~n~Q~I~sE~ 497 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAE-----------------CKPTTDLSVQGLLMIFNSQTISSES 497 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhc-----------------CCCchHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHH---------HHHHhhhCCCCC-
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY---------QNCLRKFYYNTD- 749 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---------~~al~~~~~~~~- 749 (942)
.+-.+-.....-......-+..++ ..-...-.+-...-+...+.+-.+++ +.++..-...+.
T Consensus 498 ~~~~l~~~~~~q~~v~~~~~e~L~--------F~L~~~~~~~~~~~ka~e~~~~~~Cln~~~~~~FGe~~~~~E~~~nE~ 569 (872)
T KOG4814|consen 498 SSQTLSILYTLQMIVKVSEEEPLE--------FFLNYLPTVQKLLQKAVEFLKTVKCLNQLPPDVFGEAIYQQEVAVNEI 569 (872)
T ss_pred hHHHHHHHhHHHHHHHHHHHhHHH--------HHHhhccchhHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHHhhhhHH
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCCh------hhHhhHHHHHHHHHH-hhhhhcCCCHHHHHHHH
Q 002286 750 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL---APSNY------TLRFDAGVAMQKFSA-STLQKTRRTADEVRSTV 816 (942)
Q Consensus 750 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~------~~~~~la~~~~~~~~-~~l~~~~~~~~~~~~a~ 816 (942)
..+--+||.-+.+...++-..+.+.-+.+. -|.|. .++-..+++++-+.. +.-++..-+-++..-+.
T Consensus 570 ~WFa~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~L~~~~~IaLEk~~K~~~~~~Q~~~~s 649 (872)
T KOG4814|consen 570 EWFASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKALILQLIIALEKAKKDQHQKDQDIYES 649 (872)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHH
Q 002286 817 AELENAVRV 825 (942)
Q Consensus 817 ~~l~~a~~~ 825 (942)
..|...+.+
T Consensus 650 e~L~~s~~~ 658 (872)
T KOG4814|consen 650 EELVNSINV 658 (872)
T ss_pred HHHHhhhhh
No 357
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=9.6 Score=39.79 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-- 177 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-- 177 (942)
+++..=.+.+..+|....+|..+-.++. .+.-+++-+.+...+++.+|+...+|..+..++.+.+.
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 5666667777778876666655433222 22245666778888899999999999999999987764
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh------cc--
Q 002286 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---GQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE-- 246 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------~~-- 246 (942)
+..=+.+++++++.+|.+.-...+..-.+-... ....+=+.+..+++..++.|..+|.....+.... |.
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~ 206 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFM 206 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccC
Confidence 688899999999999988333323222222222 2355667788888888999999998877766532 21
Q ss_pred -HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 247 -AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 247 -~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
..-...-+.....++-.+|++..+|..
T Consensus 207 ~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 207 PKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223556666777777788888877765
No 358
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.43 E-value=0.4 Score=31.91 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.++.++|.+|..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777664
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.30 E-value=1.8 Score=40.40 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=61.7
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHccc
Q 002286 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQ 765 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~l~~~~~~~g~ 765 (942)
.-.-..|...|-++-... ..++++..+.+|..|. ..+.++|+.++.++++..+.. .++.++..|+.++++.|+
T Consensus 119 r~~d~~A~~~fL~~E~~~----~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTP----ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred ccCcHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 334467777776664432 2378999999998887 588999999999999987544 349999999999999999
Q ss_pred HHHHH
Q 002286 766 WQDCK 770 (942)
Q Consensus 766 ~~~A~ 770 (942)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
No 360
>PF13041 PPR_2: PPR repeat family
Probab=91.24 E-value=0.99 Score=31.57 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~ 760 (942)
..+|..+-+.+.+.|++++|.++|+++.+. +-.++..++..+..++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGL 48 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 456677777777777777777777777764 3455666666655554
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.06 E-value=2.3 Score=32.60 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.+.-|.-++...+..+|+..|+++++..++...-+..+|.+.....+.|.+.+.+...-+-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888888877777777765555544444777766554433
No 362
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.04 E-value=0.51 Score=31.37 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
.++.+||.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57899999999999999999999999876
No 363
>PF12854 PPR_1: PPR repeat
Probab=90.94 E-value=0.53 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~ 66 (942)
++...|..+...|++.|++++|.++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44558999999999999999999999875
No 364
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=90.93 E-value=2.6 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 848 HVEYCKHLLDAAKIHREAAEREEQQ 872 (942)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~e~~ 872 (942)
+...++.+|.+.+..-+++++.++|
T Consensus 215 gv~~~qe~La~~qe~eE~qkreeEE 239 (1064)
T KOG1144|consen 215 GVRAMQEALAKRQEEEERQKREEEE 239 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544443333333333
No 365
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=2.9 Score=39.29 Aligned_cols=7 Identities=43% Similarity=0.734 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 002286 903 KRKLEDE 909 (942)
Q Consensus 903 ~~~~~~~ 909 (942)
.|+..+|
T Consensus 161 ~RkakEE 167 (299)
T KOG3054|consen 161 ERKAKEE 167 (299)
T ss_pred HHHHHHH
Confidence 3333333
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=11 Score=41.30 Aligned_cols=129 Identities=17% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH-H
Q 002286 147 ASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-A 223 (942)
Q Consensus 147 A~~~~~~~l~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 223 (942)
++..+...+..+|.++..++. +...+...+....+.-.....+..+|+. ......+|......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556666666678888776544 3666777888889999999999999998 55677788888778877777766666 8
Q ss_pred HhhCCCCHHHHHHH------HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 224 LQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 224 l~~~p~~~~~~~~l------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
....|++......+ +......+. ..++...+.++....|.++.+...+.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 88899988876666 666666666 777777788888888888766665555433
No 367
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.26 E-value=0.63 Score=49.20 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
....|+..|.+++...|.....+...|.++++. |+.-.|+.-...+++++|.. ...++.++.++..++++.+|+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhhhh
Confidence 344455555555555555554444444444433 33334444444444445444 33445555555555555555554
Q ss_pred HHHHHhhCC
Q 002286 220 FQRALQLDP 228 (942)
Q Consensus 220 ~~~al~~~p 228 (942)
...+....|
T Consensus 468 ~~alq~~~P 476 (758)
T KOG1310|consen 468 HWALQMSFP 476 (758)
T ss_pred HHHHhhcCc
Confidence 444444444
No 368
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.16 E-value=9.5 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002286 838 HGFDEKKINTHVEYCKHLLDAAKIHR 863 (942)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (942)
++|.++.+.+..+.|.+-.+.+-.++
T Consensus 313 mGfeesdaRlaLRsc~g~Vd~AvqfI 338 (568)
T KOG2561|consen 313 MGFEESDARLALRSCNGDVDSAVQFI 338 (568)
T ss_pred cCCCchHHHHHHHhccccHHHHHHHH
Confidence 57777888888888877666655443
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.10 E-value=10 Score=41.43 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred HHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 135 GQLLLAKGEVEQASSAFK--IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
=......|+++++..... +++..-| ..-....+..+.++|.++.|+.+.+. +..++.++ .++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeLA---l~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------PDHRFELA---LQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHHH---HhcCC
Confidence 344556677777666654 1221122 23344555566666777666654321 33445443 45777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~ 292 (942)
.+.|.+... ..+++..|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+.-.++.+
T Consensus 334 L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHH
Confidence 777766533 23466778888888888877 7777777765421 2334445556666655555555
Q ss_pred HHH
Q 002286 293 TAL 295 (942)
Q Consensus 293 ~~~ 295 (942)
.+.
T Consensus 398 ~a~ 400 (443)
T PF04053_consen 398 IAE 400 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 370
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.87 E-value=2.5 Score=50.57 Aligned_cols=173 Identities=21% Similarity=0.196 Sum_probs=123.3
Q ss_pred hcHHHHHHHcCChHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcH
Q 002286 346 YGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDA 410 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~ 410 (942)
...|+.....|.+.+|.+ .+... ....|+....+..++.++...|+.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 345666666777777766 55533 3457888999999999999999999999988776533 25667
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG-E--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 486 (942)
..+..++... ..+....|+..+.++..+..-.. . +....+..+++.++...++++.|+.+++.|+...... ..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~g- 1092 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--LG- 1092 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--cC-
Confidence 7778888776 77889999999988887754332 2 2223556788888999999999999999998832100 00
Q ss_pred cccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
...-.....+..+++++...+++..|....+....
T Consensus 1093 --------------------------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1093 --------------------------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 01123455667778888888888887776665544
No 371
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.78 E-value=0.54 Score=46.18 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
.|.++....|+++..|...+....+.|.|.+--..|..+++.+|.|++.|.. -+.-+...++++.+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444445568899999999999999999999999999999999999999977 555677889999999999999999999
Q ss_pred CchhhHh
Q 002286 195 CPGAIRL 201 (942)
Q Consensus 195 ~~~~~~~ 201 (942)
. +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 55554
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.49 E-value=2.8 Score=34.27 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=46.7
Q ss_pred HHhcCCHhHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 419 LLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 419 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
.+..||+..|++.+.+............ -...+.+++.++...|++++|+..+++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3377888888888888887766554333 13567788999999999999999999999853
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.28 E-value=0.57 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 002286 716 VWINLAHVYFAQGNFALAMKMY 737 (942)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~ 737 (942)
+.+++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555444
No 374
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.20 E-value=5.8 Score=47.71 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 335 (942)
.|.....+..++.++...|++++|+....++.- ...+.|.....+..++...+..++...|...+.++....
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 455555566666666666666666655555442 122334444555555555555555555555555544311
Q ss_pred --CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+..|........++.++...++++.|+.+++.+++
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 12333333344444444444555555555555544
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.03 E-value=8.1 Score=38.69 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
++..++..+...|+++.+...+++.+..+|.+-..|..+...|...|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666666666777777777777777777766777776777777777777777766655
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.78 E-value=0.83 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~ 65 (942)
.+.+.+|..++.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998863
No 377
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=88.71 E-value=2.1 Score=47.67 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 002286 857 DAAKIHREAAE 867 (942)
Q Consensus 857 ~~~~~~~~~~~ 867 (942)
+..+..|++.+
T Consensus 217 ~~~qe~La~~q 227 (1064)
T KOG1144|consen 217 RAMQEALAKRQ 227 (1064)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.66 E-value=28 Score=34.80 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccH
Q 002286 692 DVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQW 766 (942)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~ 766 (942)
...++++.++.+........ ....+...+|..|+..|++++|+.+|+.+...|....- ..++..+..|....|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34566666666655322111 23456678899999999999999999999887754332 66778888999999999
Q ss_pred HHHHHHHHHHH
Q 002286 767 QDCKKSLLRAI 777 (942)
Q Consensus 767 ~~A~~~~~~al 777 (942)
+..+.+.-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 99887765544
No 379
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.58 E-value=48 Score=37.42 Aligned_cols=21 Identities=0% Similarity=0.052 Sum_probs=14.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHH
Q 002286 663 LYTRVIVQHTSNLYAANGAGV 683 (942)
Q Consensus 663 ~~~~~l~~~p~~~~a~~~la~ 683 (942)
-|+++++.||.+...+.....
T Consensus 764 EFDqiMksDPe~m~~lv~kVn 784 (1259)
T KOG0163|consen 764 EFDQIMKSDPETMLELVAKVN 784 (1259)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 478888889987766554433
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.44 E-value=1.6 Score=27.87 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 002286 166 LGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~ 184 (942)
+++|..+..+|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3333333333444444333
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.41 E-value=1.3 Score=28.28 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~ 161 (942)
+.++.+|..+..+|++++|+..|. -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 468889999999999999999944 777777654
No 382
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=35 Score=35.64 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhcC-CCC--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHH
Q 002286 655 THLEKAKELYTRVIVQH-TSN--------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW-INLAHVY 724 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~~--------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~la~~~ 724 (942)
+.+.+|..+-+..+... -.| ...++.+..++...|+...-...+...+....-........++ ..+-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 77888887776655432 112 2234555666677788766666666655543110000223333 4456889
Q ss_pred HHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 725 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+..+.|+.|-....+..--...+++ +..++++|++..-.++|..|.+++-.++...|++..+=|...
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~ 288 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQ 288 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHH
Confidence 9999999998886554311111222 677899999999999999999999999999999766655433
No 383
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.40 E-value=1.1 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
+++..||.+-+..++|++|+.-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888888888888888888888888875
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.34 E-value=4 Score=38.21 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002286 409 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 409 ~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
++...+.+|..|...|.++++..+.+++++.+. +..++++++..++.++...|+++.|-
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555555666666666666655433 22456677777777777777776653
No 385
>PF12854 PPR_1: PPR repeat
Probab=88.10 E-value=1 Score=28.37 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLR 775 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 775 (942)
+|..++..+...|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555555555555555555555543
No 386
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.78 E-value=34 Score=37.46 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=14.3
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKV 368 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (942)
...|..||......|+++-|..+|.++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 334555555555555555555555543
No 387
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.67 E-value=1.9 Score=45.90 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
......|+..|.+++...|.....+..++.++++.+ +.-.|+..+..+++.+|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 445568999999999999999999999999998874 66678888888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 002286 184 FYKRALQVHPSC 195 (942)
Q Consensus 184 ~~~~~l~~~p~~ 195 (942)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
No 388
>PF13041 PPR_2: PPR repeat family
Probab=87.49 E-value=1.1 Score=31.28 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=30.3
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhH
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 637 (942)
...|..+...+.+.|++++|.+.|+++.+.+-.++.+++..+-+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445666777777777777777777777776666666666555443
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.42 E-value=34 Score=34.41 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 428 ALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 428 A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
-....+++++..... ....+++++..+|..+++.|++.+|..+|-.
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 445556666666211 2234578888888888888888888877753
No 390
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.38 E-value=10 Score=38.06 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHH
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (942)
..++..++..+...|+++.++..+++.+..+|.+...|..+...| ..|+...|+..|++..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456677777777788888888888888888888888888888877 888888888888877764
No 391
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=3.3 Score=40.75 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 170 (942)
+.++.|....++.+..+|.++..+--+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344477777777777778777777777888888888888888887777777777766555444
No 392
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.22 E-value=4.5 Score=42.46 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 845 INTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEA 889 (942)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 889 (942)
+..|+.+.....++++....+-...|.|...|.|++|++.+++.+
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~ 434 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERA 434 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 444555555555555444333334444555556666655555433
No 393
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.16 E-value=13 Score=38.83 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCC--------CC---------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHP--------SC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
+.-|..++++|+|..|..-|..++++.. .. ...+--.+..||..+++.+.|+..--+.+-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3345566777777777777776666521 11 012334578899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccHHhHHHHHHHH
Q 002286 229 ENVEALVALAVMDLQANEAAGIRKGMEKM 257 (942)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 257 (942)
.+...+..-+.+.....+ |.+|-..+
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarSa 285 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARSA 285 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHHH
Confidence 888888888888777766 66665443
No 394
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.96 E-value=3.6 Score=42.53 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=75.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
|..++++++|..|..-|..+++.+.....++.......- +.......+-..+..|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~-------------------------di~~vaSfIetklv~C 237 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAE-------------------------DISSVASFIETKLVTC 237 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChh-------------------------hHHHHHHHHHHHHHHh
Confidence 566788888888888888888865433322221110000 0001122345567889
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
|..+++++.|+....+.+..+|.+..-+++.+.++..+.+|.+|...+--+
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887665443
No 395
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=25 Score=36.83 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=99.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----C
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g 176 (942)
...+...+++-+.+...+++.+|++..+|..+..++.+.+ ++..=+.+++++++.+|.|..+|...=.+.-.. .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 3455667788899999999999999999999999999887 468889999999999999988886554444332 2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH------cCC------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 177 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
...+=+.+..+++..++.+ -.+|.....++.. .|+ ...-+.....++-.+|++..+|+..-.
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 3567788899999988888 4445555544442 231 123344455566679999999877333
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.48 E-value=52 Score=35.57 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.|-+-.++..+-.++...-.+.-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 44455566666666666666666667777887766543 4577788888877 55666778888888887777777777
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
+..|.. ++ ..++...|.+++..
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 777766 44 67777777777644
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.02 E-value=1.5 Score=29.46 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
-+.+|.+|...|+.+.|..+|++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999999854
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=85.46 E-value=54 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=15.4
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHh
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (942)
...|+.++..-.-.|+.+-|.-.-++++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 334555555555555555555555555444
No 399
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.00 E-value=17 Score=34.90 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=4.2
Q ss_pred CCHHHHHHH
Q 002286 807 RTADEVRST 815 (942)
Q Consensus 807 ~~~~~~~~a 815 (942)
|.+.+++-|
T Consensus 268 rhlsevqia 276 (445)
T KOG2891|consen 268 RHLSEVQIA 276 (445)
T ss_pred hhhhHHHHH
Confidence 444555443
No 400
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=55 Score=34.28 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCchhhh
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPY 345 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~ 345 (942)
.|+.+..++...|+...-..++...+... .+....+...+.+-+.|...+.|+.|-....+..- ....+.....-.
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 34444455555555444444444443221 12233344555666667777777777666655541 000111223335
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 566777777777777777777777777753
No 401
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=84.05 E-value=14 Score=40.79 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhhh
Q 002286 916 QEEHFQRVKARIFYI 930 (942)
Q Consensus 916 ~~~~~~~~~~~~~~~ 930 (942)
+|++-++-.+...++
T Consensus 364 ~E~rkkr~~aei~Kf 378 (811)
T KOG4364|consen 364 QELRKKRHEAEIGKF 378 (811)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555555555444
No 402
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.91 E-value=35 Score=31.31 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHHH
Q 002286 691 FDVSKDLFTQVQEA 704 (942)
Q Consensus 691 ~~~A~~~~~~~~~~ 704 (942)
..+|++++.++-+.
T Consensus 128 ~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 128 SEKAERYMTRACDL 141 (248)
T ss_pred cHHHHHHHHHhccC
Confidence 44555555555543
No 403
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.77 E-value=8.9 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
.+...++++.|+...++.+.++|.+ +.-..-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~d-p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPED-PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCC-hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4455566677777777777777766 333455667777777777777777766666666655543
No 404
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=83.30 E-value=35 Score=30.84 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 839 GFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
+|-...+..|...+.+-++.+....++++....+...++..+|+.+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333567777777777777777766666665555555555555544
No 405
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=83.11 E-value=28 Score=33.35 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
..+..|...+.+-++.+.....++++...+.+.++.++|+..
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666766666666666666555555555555555443
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.83 E-value=49 Score=33.05 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=61.2
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
.....+..+.++...+...+.... ..+...+|..|+..|++++|+.+|+.+.......+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------------------- 212 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------------------- 212 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 345567777777777776544222 35667889999999999999999999965321000
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (942)
-......++..+..++...|+.+..+...-++
T Consensus 213 -----------------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 213 -----------------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11224556777788888888888777655444
No 407
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=82.68 E-value=25 Score=28.74 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002286 853 KHLLDAAKIHREAAERE 869 (942)
Q Consensus 853 ~~~~~~~~~~~~~~~~~ 869 (942)
-++|+....-+..++-+
T Consensus 58 h~ILDd~~~~l~~sk~~ 74 (105)
T PF11214_consen 58 HSILDDTESKLNDSKWY 74 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 408
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=82.51 E-value=2.4 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=32.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhhh--hceeeeec
Q 002286 901 LEKRKLEDEQKRLRQQEEHFQRVKARIFYI--CSIKIFKF 938 (942)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 938 (942)
+-+.+..++.++.++.-++.++-.-.|-++ +|++|||.
T Consensus 8 ETRsr~KddiKrv~~~iekVr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 8 ETRSRAKDDIKRVMASIEKVRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhhceEEeccceEEEEEE
Confidence 344556789999999999999999999988 68999985
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.30 E-value=59 Score=32.76 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHhcCChHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLE 183 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~~a~~~~~~g~~~~A~~ 183 (942)
+..-.+.|+.+- +.-...-.+|..+...|..+...|++.+|...|-.. +++.... .+-..
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~------------ 130 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEE------------ 130 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHH------------
Confidence 344445556555 322222246778888888888888887777666322 1111111 11111
Q ss_pred HHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHHH--HHHHHHHhhcc
Q 002286 184 FYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALV--ALAVMDLQANE 246 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~~~~--~l~~~~~~~~~ 246 (942)
-.....|.. .+.+.. ....|..+++...|...+...++. +|+ +...+. .+-..-+..++
T Consensus 131 ---~~~~~~~~e-~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 131 ---WSTKGYPSE-ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp ---HHHHTSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred ---HHHhcCCcc-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Confidence 111223443 333333 334566678888888877766655 332 222111 11122233333
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
...+..-.+.|...++.+|.....+..+|..|+..
T Consensus 207 ~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 207 LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 33344445555555555565666666666666553
No 410
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=82.30 E-value=39 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 882 (942)
.....|...+.+-+..++...+.++....+..++++++|.
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~ 72 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEARE 72 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655555555555555555553
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.14 E-value=22 Score=35.17 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
+..+|.+..+.|+|++.+.++++++..+|.....-+..+..+|-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayK 47 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYK 47 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45566777777777777777777777766654444555555553
No 412
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.94 E-value=21 Score=34.31 Aligned_cols=7 Identities=0% Similarity=0.311 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 002286 919 HFQRVKA 925 (942)
Q Consensus 919 ~~~~~~~ 925 (942)
+.+++.|
T Consensus 408 kikelee 414 (445)
T KOG2891|consen 408 KIKELEE 414 (445)
T ss_pred HHHHHHH
Confidence 3334433
No 413
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.90 E-value=1.8 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
+++|.+|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555555555555555553
No 414
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=81.75 E-value=39 Score=31.71 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
..+..|...+.+.+..+....+++++...+...++..+|+.
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555444444444444443
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.45 E-value=3 Score=44.23 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH-------HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~-------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.+|..+++|.+|++.|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888899999999887643 2223444466788899999999999999999998764
No 416
>PTZ00121 MAEBL; Provisional
Probab=80.27 E-value=29 Score=42.36 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.2
Q ss_pred HHHHHHhhcCCCC
Q 002286 115 QYYNKASRIDMHE 127 (942)
Q Consensus 115 ~~~~~a~~~~p~~ 127 (942)
..|+-.+..-|.+
T Consensus 137 AMyqGlf~~CP~~ 149 (2084)
T PTZ00121 137 AMYQGLFKRCPLD 149 (2084)
T ss_pred HHHhchhhcCCCc
Confidence 3334444444433
No 417
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.76 E-value=3.7 Score=26.59 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKV 588 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 588 (942)
+++..||.+....++|++|+.-|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46677777777777777777777777665
No 418
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=23 Score=33.62 Aligned_cols=16 Identities=25% Similarity=0.163 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 002286 891 RKAEEQKKYLLEKRKL 906 (942)
Q Consensus 891 ~~~~~~~~~~~~~~~~ 906 (942)
++..|.+-..+..+|.
T Consensus 142 rKkdEeR~~eEae~k~ 157 (299)
T KOG3054|consen 142 RKKDEERLAEEAELKE 157 (299)
T ss_pred HhhhHHHHHHHHHHhH
Confidence 3333333333333333
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.25 E-value=5.9 Score=24.11 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
+.+.|...|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555566666666666655555555443
No 420
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=77.52 E-value=31 Score=36.45 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 002286 823 VRVFSHLS 830 (942)
Q Consensus 823 ~~~~~~l~ 830 (942)
..-+.++.
T Consensus 61 ~~q~~~~q 68 (387)
T PRK09510 61 VEQYNRQQ 68 (387)
T ss_pred HHHHHHHH
Confidence 33344443
No 421
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.42 E-value=47 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 002286 896 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKA 925 (942)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (942)
+..+++..++++++.+.+.|.+.......+
T Consensus 140 ~~i~ee~~~~~e~~~a~k~qae~eVl~~ie 169 (227)
T KOG4691|consen 140 QRIAEEQARKAEEVQAWKQQAEREVLQLIE 169 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555544444333
No 422
>PLN03086 PRLI-interacting factor K; Provisional
Probab=77.05 E-value=17 Score=40.54 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002286 869 EEQQNRQRQEAARQAA 884 (942)
Q Consensus 869 ~e~~~~~~~~~~~~~~ 884 (942)
.++|++++.+.||.+.
T Consensus 12 ~~~~~~~~~~~~~~~~ 27 (567)
T PLN03086 12 LEREQRERKQRAKLKL 27 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 423
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=77.02 E-value=13 Score=38.80 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002286 812 VRSTVAELENAVRVFSHLS 830 (942)
Q Consensus 812 ~~~a~~~l~~a~~~~~~l~ 830 (942)
+.....-+..+..+...+.
T Consensus 230 ~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333444445555555554
No 424
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.53 E-value=1.7e+02 Score=34.87 Aligned_cols=114 Identities=18% Similarity=0.032 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhhhcHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHH------
Q 002286 307 SYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDF--RSALTNFEKVLEIYPDNCE------ 377 (942)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~------ 377 (942)
-+..++..|...|+.++|++.+........ .++.....+-.....+...+.. +-..++-.-++..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 355666667777777777777776664221 1112222222233333333333 3344444444444443210
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Q 002286 378 -------TLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL 420 (942)
Q Consensus 378 -------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~ 420 (942)
.-.....-|......+-++.+++.++..+.. +...+..++.+|
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 0011122234455666677777777765543 344444444444
No 425
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=76.53 E-value=61 Score=31.15 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.++.+....+++++...+-+.+++.++..
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555555544555544443
No 426
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=75.85 E-value=76 Score=32.22 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 002286 853 KHLLDAAKIHREAA 866 (942)
Q Consensus 853 ~~~~~~~~~~~~~~ 866 (942)
.+.++++..++.+.
T Consensus 139 gKtlEQAl~EV~EE 152 (291)
T PF06098_consen 139 GKTLEQALMEVMEE 152 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456655544333
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=75.71 E-value=25 Score=30.35 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 717 WINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 717 ~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
|+.+| .++..+|+-+.=-+.+....+. ...+|.++..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.92 E-value=91 Score=30.82 Aligned_cols=63 Identities=10% Similarity=-0.055 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH-hcCChHHHHHHHHHHHHhC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~ 192 (942)
-++.+|.+..+.|+|++.+.++.+++..+|.- ..-...+..+|- ..|....+...+.......
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 35678899999999999999999999887643 333444444442 2356666666666655543
No 429
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=74.57 E-value=1.1e+02 Score=31.44 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhH--------------HHHHHHHHHHHHHHHHhcC-CCC
Q 002286 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL--------------EATHLEKAKELYTRVIVQH-TSN 674 (942)
Q Consensus 610 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~--------------~~~~~~~A~~~~~~~l~~~-p~~ 674 (942)
.+|+..-.-...+.|. ++.++-.++-. .++..+...+.... ..+-++++.....+++... |.-
T Consensus 213 ~EairLgRll~~L~p~-EPE~~GL~ALm-ll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 213 DEAIRLGRLLARLLPG-EPEALGLLALM-LLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHcCC-ChHHHHHHHHH-HHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Q ss_pred HHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 675 LYAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 675 ~~a~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
-...-.++.++.... ++..-..+|+-.....| +|.+-.|.+-+.....-...++.+.+.....-.-...
T Consensus 291 YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 291 YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGY 364 (415)
T ss_pred HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccc
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
.-....-|..+.+.|+.++|...|++++.+.++...-.|
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.54 E-value=8.7 Score=23.33 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQA 169 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a 169 (942)
+++.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.17 E-value=64 Score=28.67 Aligned_cols=37 Identities=8% Similarity=-0.092 Sum_probs=20.9
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 571 (942)
+...+.+.....+++.++..++.++..+..+..++..
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 3444556666666666666555555555555555544
No 432
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.62 E-value=1.8e+02 Score=33.73 Aligned_cols=373 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChH-------HHHHHHHHHHHh----CCCcH
Q 002286 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR-------SALTNFEKVLEI----YPDNC 376 (942)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~~l~~----~p~~~ 376 (942)
...+...+.+.|++++|.++....-. ...............+....+-. .-...|++.+.. +|--.
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~---~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN---QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG---GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh---hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhH-----HHHHHHHHHHHHHHcCCCCCHHH
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA-----ALDAFKTARTLLKKAGEEVPIEV 450 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~-----A~~~~~~a~~~~~~~~~~~~~~~ 450 (942)
.++..+|.|-........-....+..+ |+.|..+- .....+. .+.-+++.+......--.. ..-
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~L---------W~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~ 260 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWL---------WLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSN 260 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHH---------HHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT----
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHH---------HHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chh
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHH
Q 002286 451 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530 (942)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (942)
-.....++.-.|+++.|+.++-+.-. ...--..
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~~~~-----------------------------------------------~~~dAVH 293 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYRNEF-----------------------------------------------NRVDAVH 293 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT--T------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcc-----------------------------------------------CcccHHH
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC--------------
Q 002286 531 LARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNG-------------- 590 (942)
Q Consensus 531 la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p-------------- 590 (942)
+|.++...|-.......-...+...|.. +........ .+...+..+|..++--+-....
T Consensus 294 ~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eL 372 (613)
T PF04097_consen 294 FAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFEITDPREALQYLYLICLFKDPEQRNLFHECLREL 372 (613)
T ss_dssp HHHHHHHTT------------------------HHHHHHHHHH-TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q ss_pred --CChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 591 --KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 591 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
...+.-..+|.+-..-......++...+.+..... +.+....+..+ -...... |++.+|+.+|.
T Consensus 373 vletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~-~~~~~~i~~~~-A~~~e~~---------g~~~dAi~Ly~--- 438 (613)
T PF04097_consen 373 VLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDD-EDFLREIIEQA-AREAEER---------GRFEDAILLYH--- 438 (613)
T ss_dssp HHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSS-SHHHHHHHHHH-HHHHHHC---------T-HHHHHHHHH---
T ss_pred HHccCCHHHHCCCCCCCCccccceeeccccccCCCCc-HHHHHHHHHHH-HHHHHHC---------CCHHHHHHHHH---
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCCC--------CCchhHHHHHHHHHHHhcCH-----HHHH
Q 002286 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA-SGSVF--------VQMPDVWINLAHVYFAQGNF-----ALAM 734 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~--------~~~~~~~~~la~~~~~~g~~-----~~A~ 734 (942)
-.|+++.++.++.+.+... ..... .+-...-..+...|...+.. ....
T Consensus 439 ------------------La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 439 ------------------LAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp ------------------HTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred ------------------HHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 735 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 735 ~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
..+...+.. .-..-++..|+++.|++.+++ +.+-|.++.
T Consensus 501 ~t~~~Ll~L-----------~~ff~~~~~g~~~~AL~~i~~-L~liP~~~~ 539 (613)
T PF04097_consen 501 ETFQLLLDL-----------AEFFDLYHAGQYEQALDIIEK-LDLIPLDPS 539 (613)
T ss_dssp HHHHHHHHH-----------HHHHHHHHTT-HHHHHHHHHH-TT-S-S-HH
T ss_pred HHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHh-CCCCCCCHH
No 433
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.47 E-value=5.6 Score=38.84 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 002286 891 RKAEEQKKYLLEKRKLEDEQK 911 (942)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~ 911 (942)
++++|-+|++.|..|+|+++.
T Consensus 71 ~rqeEL~Rke~ELdRREr~~a 91 (313)
T KOG3088|consen 71 KKQEELRRKEQELDRRERALA 91 (313)
T ss_pred HHHHHHHHHHHHHhHHHHHHh
Confidence 333333333333333444433
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.33 E-value=21 Score=38.34 Aligned_cols=65 Identities=20% Similarity=0.089 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
-...+...|++++|..|..+|+.+...-+ +. .....+..++.+|..--..+ |.+|...++....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~-----~~--~~~~~~~~l~~~y~~WD~fd---------~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLP-----GR--EEYQRYKDLCEGYDAWDRFD---------HKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----ch--hhHHHHHHHHHHHHHHHccC---------HHHHHHHHHHHHH
Confidence 36778889999999999999999876411 11 12456777777777665544 6689999998876
Q ss_pred c
Q 002286 123 I 123 (942)
Q Consensus 123 ~ 123 (942)
.
T Consensus 198 ~ 198 (379)
T PF09670_consen 198 R 198 (379)
T ss_pred H
Confidence 4
No 435
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=73.22 E-value=74 Score=29.01 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 882 (942)
+....|.+.+.+.++.+....+++++...+-++++..+|.
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555555544444444444444
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.72 E-value=36 Score=36.39 Aligned_cols=64 Identities=27% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 307 SYYNLARSYHSKGDYEKAGLYYMASVKE-----INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+...+.+++.-.|+|..|++.++..--. ....+-.+..++.+|-+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888877654210 001234455577788888888888888888877754
No 437
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=72.59 E-value=22 Score=37.07 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 002286 818 ELENAVRVFSHLSA 831 (942)
Q Consensus 818 ~l~~a~~~~~~l~~ 831 (942)
.+..-+.++-.|.+
T Consensus 232 ~~~~l~~~v~~l~D 245 (321)
T PF07946_consen 232 ALEPLLKLVFYLID 245 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 438
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.39 E-value=16 Score=36.27 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (942)
+...+..+...|.+.+|+.+.++++..+|-+ ...+..+..++..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445666777788888888888888888877 5667777778888888777776666643
No 439
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=72.30 E-value=27 Score=36.98 Aligned_cols=21 Identities=48% Similarity=0.509 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002286 880 ARQAALAEEARRKAEEQKKYL 900 (942)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~ 900 (942)
+.+....+|++|+++|+|...
T Consensus 416 ae~e~kreearrkaeeer~~k 436 (708)
T KOG3654|consen 416 AEKEQKREEARRKAEEERAPK 436 (708)
T ss_pred HHHHHHHHHHHHhhHhhhcch
Confidence 333333445555555544433
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.17 E-value=30 Score=38.09 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHH
Q 002286 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736 (942)
Q Consensus 657 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 736 (942)
+-+...+.+++|...|+... .-.+..+.|+++.|.++..++ +++.-|-.||.+....|++..|.++
T Consensus 623 Fle~~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~----------~s~~Kw~~Lg~~al~~~~l~lA~EC 688 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEA----------NSEVKWRQLGDAALSAGELPLASEC 688 (794)
T ss_pred HhhhccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhh----------cchHHHHHHHHHHhhcccchhHHHH
Confidence 33444555666666555322 223455788888888776665 5677899999999999999999999
Q ss_pred HHHHHhh------hCCCCCHHHHHHHH-------------HHHHHcccHHHHHHHHHH
Q 002286 737 YQNCLRK------FYYNTDAQILLYLA-------------RTHYEAEQWQDCKKSLLR 775 (942)
Q Consensus 737 ~~~al~~------~~~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~ 775 (942)
|.++... +....+...+..+| .+|+..|++++|++.+.+
T Consensus 689 ~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 689 FLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 9887542 11233333333333 356667777777776654
No 441
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.89 E-value=1.6e+02 Score=32.20 Aligned_cols=98 Identities=18% Similarity=-0.002 Sum_probs=72.9
Q ss_pred CcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhh
Q 002286 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 601 (942)
|.+...+..+-.++.......-...+..+++.... +--+++.++.+|... ..++-...+++.++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 44445555566666666666666677777776543 457888899999888 5677788889888888888888888888
Q ss_pred hhccccchHHHHHHHHHhhcc
Q 002286 602 LELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~ 622 (942)
.|.+ ++...+...|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 8776 8888888888887753
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=78 Score=32.20 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAI 199 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~ 199 (942)
..++...|..|.+.|+-+.|.+.+.+.....- +-..+...+|..+....-..+.++..+.+++...+.. ...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 56888889999999999999888887665321 1133445566666555444555555555555443321 122
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
....|.......++.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2334556666677777777777766543
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.20 E-value=4.8 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
+|..+-..|.+.|++++|..+++++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4778889999999999999999988654
No 444
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=70.85 E-value=91 Score=29.06 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+.+..|...+.+-+..+....+++++...+-+.+++.+++.
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~e 86 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQE 86 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555665555665555555555444444555444443
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.61 E-value=1.5e+02 Score=31.38 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH---HHcCCCCCHH
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELL-ISSDTGAALDAFKTARTLL---KKAGEEVPIE 449 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~ 449 (942)
.++..+|.-|...|+++.|++.|.++-..... ....+.++..+- ..|+|..-..+..++.... .......++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46778888999999999999999886544322 345566666666 7888888887777776652 1222233455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+...-|.+.+..++|..|..+|-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666667788888899999999977654
No 446
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.59 E-value=5.3 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQE 703 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~ 703 (942)
++.+...|.+.|++++|..+|.++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666666554
No 447
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.97 E-value=26 Score=34.80 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (942)
.+...+..|...|.+.+|+++.++++.++|-+...+..+..++ ..||--.+...|++......
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 4445566777788888888888888888888888888888877 78887777777777655443
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.81 E-value=54 Score=30.27 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcC--CCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhh---hhhhhHHHHHHHH
Q 002286 40 LDLWLIIAREYFKQGKVEQFRQILEEGS--SPEIDEYYADVRYERIAILNALGVYYTYLGKIET---KQREKEEHFILAT 114 (942)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~---~~~~~~~~~~~A~ 114 (942)
.+.++.-+..+|+.|++.++.++.+-+. -..|... .......+.+...|..+ .-|+.-. +...+--=++.|+
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~-~a~~~k~l~i~QfLsRI--~eG~~LD~~Fd~~~~~TPLESAl 89 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKL-TATQLKTLRIMQFLSRI--AEGKNLDCQFENDEELTPLESAL 89 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccc-cccchhHhHHHHHHHHH--HcCCCCCCccCCCCCcChHHHHH
Confidence 3577888999999999999987665432 1112110 00000122222222221 2232210 0001111244677
Q ss_pred HHHHHHhhcCCCCc--------chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 115 QYYNKASRIDMHEP--------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (942)
Q Consensus 115 ~~~~~a~~~~p~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 176 (942)
..++.+-+..|... -.......++...|.+++|.+.+++... +|++......++.+-....
T Consensus 90 ~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 90 MVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 77777665544210 1112234667778888888888888776 6666555555544433333
No 449
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=69.79 E-value=97 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.+..+....+++++...+...+++.+++.
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~e 85 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444444444444443
No 450
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=69.15 E-value=1.6e+02 Score=32.31 Aligned_cols=168 Identities=15% Similarity=0.054 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhh-HH-HHHHHHHHHHHHHHHcchhhh---hhhhhHHHHHHHHHH
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RY-ERIAILNALGVYYTYLGKIET---KQREKEEHFILATQY 116 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~y~~~g~~~~---~~~~~~~~~~~A~~~ 116 (942)
..-.+|..+|-.|+|+-|..+|+.+... |.++ .. --..++-..+.+.+..|.... ....-+..++.|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~D-----f~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKD-----FKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHH-----HhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 3456889999999999999999987542 2211 11 112334444555555554322 122335678888888
Q ss_pred HHHHh----hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 117 YNKAS----RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRD-----NVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 117 ~~~a~----~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~-----~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
|.+.- ...+......+..+.++...|.+.+|...+-+.... ..+ ....+-..|.++
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~------------- 351 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY------------- 351 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-------------
Confidence 88842 222234456666778888888888877766666544 211 122222333333
Q ss_pred HHHHHh-CC--C---C--chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 186 KRALQV-HP--S---C--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 186 ~~~l~~-~p--~---~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
..+.. .| . . .+.....-|.-|...|+...|..+|.+++....
T Consensus 352 -~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 -ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11111 11 1 0 022334567778888899999999888887643
No 451
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=68.58 E-value=26 Score=32.86 Aligned_cols=49 Identities=29% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002286 868 REEQQNRQRQEAARQAALAE---EARRKAEEQKKYLLEKRKLEDEQKRLRQQ 916 (942)
Q Consensus 868 ~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (942)
.........+++||+..+++ ++++..|+++++++++|++.-++-..+++
T Consensus 76 d~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~EEEKRrqkie~we~~q~ 127 (190)
T PF06936_consen 76 DVVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEEEEKRRQKIEMWESMQE 127 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=68.45 E-value=99 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.+..+....+++++...+-.+++..+++.
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~e 75 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAE 75 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666676666666666666655555555555555544
No 453
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.14 E-value=41 Score=31.95 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=36.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.++..+...+|+...+.-++..|.+......+-.++.-.|+|++|+.-++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44555566666666666666666666555555555666666666666666666666555
No 454
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=67.99 E-value=64 Score=28.09 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHh-----------cCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAA-----------SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~-----------p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
....+..++.+.|+.+.-..+++.+-... |+++...+...+..+.++|...|++..|+++.....+.|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 34455667777888887777777765443 2233334566677777777777888888888777777776
Q ss_pred CCCCHHHHHHH
Q 002286 746 YNTDAQILLYL 756 (942)
Q Consensus 746 ~~~~~~~~~~l 756 (942)
-+-...++..|
T Consensus 84 I~i~~~~W~~L 94 (126)
T PF12921_consen 84 IPIPKEFWRRL 94 (126)
T ss_pred CCCCHHHHHHH
Confidence 54444444443
No 455
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=67.76 E-value=1.1e+02 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAA 880 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 880 (942)
+....|...+.+-++.+....+++++...+-+.+++.+
T Consensus 43 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 43 KALDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444444333333333333
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.36 E-value=2e+02 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 002286 309 YNLARSYHSKGDYEKAGLYYMASVKEI 335 (942)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 335 (942)
..-|.-|...|+...|..+|..+...+
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 334567777788888888888777644
No 457
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.34 E-value=94 Score=35.40 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC------ChhHHHHhhhhhc---cccchHHHHHHHHHhhccCCCCchh
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSY 629 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~ 629 (942)
++....+...|....+|+.-+++.+..-.+ |+ ...+.+.++-++. +-|+.++|+...-.+++......+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455556666666677777666666554333 31 1223333333333 3477888888888877765543444
Q ss_pred HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 002286 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (942)
Q Consensus 630 ~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 689 (942)
.++..|.+ |-.+--. +.-...+..+.|++.|+++++..|.- ++-.+++.++...|
T Consensus 280 m~Cl~GRI-YKDmF~~---S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRI-YKDMFIA---SNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAG 334 (1226)
T ss_pred eeeeechh-hhhhhhc---cCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhh
Confidence 44556666 6544211 00112388899999999999999863 23334555555544
No 458
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=66.68 E-value=1.1e+02 Score=28.32 Aligned_cols=40 Identities=8% Similarity=0.181 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 882 (942)
+....|...+..-++.+....+++++...+..+++..+++
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~ 88 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKE 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444444444444433
No 459
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.05 E-value=18 Score=32.10 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~ 177 (942)
...+..+..+...+..|++.-|..+.+.++..+|+|..+...++.++.+.|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4456778888888889999999999999999999988888888887766653
No 460
>PLN03086 PRLI-interacting factor K; Provisional
Probab=65.48 E-value=50 Score=36.96 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002286 866 AEREEQQNRQRQEAARQAALA 886 (942)
Q Consensus 866 ~~~~e~~~~~~~~~~~~~~~~ 886 (942)
+++.-++.+.|++.+|+.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~ 36 (567)
T PLN03086 16 QRERKQRAKLKLERERKAKEE 36 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666666666544
No 461
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=65.37 E-value=1.2e+02 Score=28.51 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
.....|...+.+.++.+....+++++...+-+.+++.+|...
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea 95 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQA 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777766666665555555555555443
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.10 E-value=73 Score=36.22 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=72.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH---hcCChHHHHHHHHHHHHhCCCCch
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV------PALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
.+++...+-..|....+|+.-+++.+..- .-|+.. ...+..|.++- +-|+-.+|+...-.+++......+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45666777777888888888777776643 334211 11222233332 237888888888888877655446
Q ss_pred hhHhhHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 198 AIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 198 ~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
+.+...|.+|-.+ +..+.|+.+|+++++..|.. .+-++++.++...|.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGE 335 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhh
Confidence 7777777776533 45677888888888887753 233445555555543
No 463
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=65.02 E-value=1.3e+02 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
.....|...+.+-+..+....+++++...+-+.+++.+++.+
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea 92 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEA 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555555555554443
No 464
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=64.61 E-value=1.2e+02 Score=28.05 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCc
Q 002286 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-----TGQHFLVEQLTETALAVTNHGPT 303 (942)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~ 303 (942)
..+++-..|+..+.... .++++|...|..--.-+ ..+...+.++..++. .++...|...+..+.. ..
T Consensus 32 K~Pe~C~lLgdYlEgi~--knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-----~n 103 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQ--KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-----AN 103 (248)
T ss_pred CCchHHHHHHHHHHHHH--HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc-----cC
Confidence 34556666665443321 12555555554432222 233445555544432 2344555555555443 34
Q ss_pred hhHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q 002286 304 KSHSYYNLARSYHSKG-------DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (942)
Q Consensus 304 ~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (942)
.+.+...+|.+++.-. +..+|..++.++.. -....+.+.|...++... ++ +....|...
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd-----l~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g 169 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD-----LEDGEACFLLSTMYMGGK--EK-------FKTNAPGEG 169 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc-----CCCchHHHHHHHHHhccc--hh-------hcccCCCCC
Confidence 4555666665555321 24556666666553 233344444444443221 11 111122100
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC-----CHhHHHHHHHHHHHHHHH
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAALDAFKTARTLLKK 441 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----~~~~A~~~~~~a~~~~~~ 441 (942)
. -...+..+.-..+.++|.++-.++-+++ ++.+..++++.|..| +.++|..+-.++.++...
T Consensus 170 ~-p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e 236 (248)
T KOG4014|consen 170 K-PLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEE 236 (248)
T ss_pred C-CcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHH
Confidence 0 0112233344456677777766666553 566666777777444 456666666666665443
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.46 E-value=17 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
|..+-.+|.+.|++++|.++|..+.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555555555555555443
No 466
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.23 E-value=25 Score=36.01 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
|..+|.+|+.+.|.. +..++.+|.+....|+.-.|+-+|-|++-.....+.+..+|..++.
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 456666666666666 6666666666666666666666666666443333444444444433
No 467
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=64.19 E-value=1.2e+02 Score=27.82 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.++.+....+++.+...+.+.+++.+++.
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~e 72 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEE 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766666666555555555555544
No 468
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.01 E-value=97 Score=31.42 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
+.+.+|..|-+.++|..|-+.|..+-..... +..+..-+......++.+|+..+... +|..+.+++.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~--~~~d~~~kl~l~iriarlyLe~~d~v-----------eae~~inRaS 171 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQ--KAYDVEQKLLLCIRIARLYLEDDDKV-----------EAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccch--hhhhhHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHH
Confidence 6789999999999999999999876443311 11112234555666777777776544 5555555542
Q ss_pred --hcCCCCcchHH----HHHHHHHHcCCHHHHHHHHHHH
Q 002286 122 --RIDMHEPSTWV----GKGQLLLAKGEVEQASSAFKIV 154 (942)
Q Consensus 122 --~~~p~~~~~~~----~~a~~~~~~g~~~~A~~~~~~~ 154 (942)
..+..|+...+ ..|+++-..|+|-+|...|-++
T Consensus 172 il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 172 ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333332 2344444455555555544443
No 469
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.54 E-value=98 Score=30.77 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CChHH
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--GRYSD 180 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--g~~~~ 180 (942)
..|++.-...+..+|..-..|..+-.+... ..-++.-+..+..+++.+|++...|...-.++-.- .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356666666666666655555554443333 12345667778888899999988887777666544 66778
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHH------HHcCCHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHhhccHHh--
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCR------YKLGQLGKARQAFQRALQLDPENVEALVAL---AVMDLQANEAAG-- 249 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~-- 249 (942)
-+.+.++++..+|.+ -.+|...-.+. ..-.++..-.++-..++..++.|..+|... ....+..|+..+
T Consensus 129 El~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk 207 (328)
T COG5536 129 ELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK 207 (328)
T ss_pred hHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH
Confidence 888888888888877 33332222222 222333344455556677788888887665 333344554322
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 250 -IRKGMEKMQRAFEIYPYCAMALNYL 274 (942)
Q Consensus 250 -~~~A~~~~~~~~~~~p~~~~~~~~l 274 (942)
+++-+++.-..+-.+|++..++..+
T Consensus 208 ~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 208 YLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHHHHHHhhhhcCccccchhhHH
Confidence 4455555555566677777666554
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.47 E-value=1e+02 Score=33.08 Aligned_cols=62 Identities=21% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHH--HHHHH--HHHHHHcCChhHHHHHHHHHHhh
Q 002286 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--AYLRL--AAIAKARNNLQLSIELVNEALKV 588 (942)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--~~~~~~~~~~~~A~~~~~~~l~~ 588 (942)
.....+.-++..++|..|..++..+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3345577788999999999999999986344333 34444 34456788999999999998765
No 471
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=63.22 E-value=1.5e+02 Score=29.83 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Q 002286 889 ARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKARIF 928 (942)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (942)
.+....+++.+.+++|+++-|++...+..... +..+.|.
T Consensus 184 ~e~l~~qe~~l~~~rr~r~~ElR~l~~kka~~-q~~e~w~ 222 (340)
T KOG3756|consen 184 REQLEKQERELLEERRARQTELRLLEQKKALA-QLFEEWN 222 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444444445566666666666655543222 2445553
No 472
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.01 E-value=1.8e+02 Score=29.56 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~ 726 (942)
|..+|.+|..+.|++...++.+|.+....|+.-.|+-.|-+++-... ..+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-----Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-----PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988888875442 357888999888877
No 473
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=62.81 E-value=1.2e+02 Score=27.34 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.+..+....+++.+...+...+++.++..
T Consensus 22 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~e 62 (147)
T TIGR01144 22 KAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDE 62 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777766666665555555555555543
No 474
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.72 E-value=3.1e+02 Score=32.19 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=35.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHH
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
+..++.+..+++.++.+.+.. .+.++..|..+-..+ ..+..+.-.+...+.++....
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~ 768 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEM 768 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Confidence 445566666777777766653 455666776666666 666666666666666665544
No 475
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.51 E-value=8 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
..|..+..++.+.|+++.|..+|+.+...
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 36888999999999999999999987543
No 476
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.15 E-value=12 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
.++.+...|.+.|++++|..+|.++.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46778889999999999999999998754
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.10 E-value=3.5e+02 Score=32.55 Aligned_cols=118 Identities=13% Similarity=-0.042 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhhcCCChh-HHH-
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY----QDYVDAYLRLAAIAKARNNL--QLSIELVNEALKVNGKYPN-ALS- 597 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~l~~~p~~~~-~~~- 597 (942)
.-+..++.+|...|+.++|++++....... +...+.+-.....+...+.. +-..++-.-.+..+|.... ++.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 356788999999999999999999988733 33345555566666666665 6677777777777765432 111
Q ss_pred -----------HhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHh
Q 002286 598 -----------MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644 (942)
Q Consensus 598 -----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~ 644 (942)
....-|+......-++.+++.++......+..-+..+... |.....
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~l-y~e~v~ 641 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKL-YLEKVL 641 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHH-HHHHHh
Confidence 1112245566778889999998887766566666666666 665543
No 478
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.96 E-value=12 Score=36.60 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002286 890 RRKAEEQKKYLLEKRKLEDEQKRLRQQEEH 919 (942)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (942)
+++++|-.++|+|.+++++|+.|.+++-++
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 344445555555555555555555554444
No 479
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=61.84 E-value=1.3e+02 Score=33.10 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002286 844 KINTHVEYCKHLLDAAKIH 862 (942)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~ 862 (942)
.+..|...+.+.++.+...
T Consensus 29 ~l~~R~~~I~~~L~eAe~a 47 (445)
T PRK13428 29 LMAARQDTVRQQLAESATA 47 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 480
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.65 E-value=16 Score=28.14 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.6
Q ss_pred HhcCHHHHHHHHHHHHhhhC
Q 002286 726 AQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~ 745 (942)
..|+|++|+.+|..++..|-
T Consensus 18 ~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 35788888888888888764
No 481
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=61.51 E-value=1.4e+02 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 844 KINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAA 880 (942)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 880 (942)
....|...+.+.++.+....+++++...+.++++..+
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 82 (173)
T PRK13453 46 VMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKET 82 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554445555544444443333333333333
No 482
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=61.49 E-value=1.4e+02 Score=27.68 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 882 (942)
..+..|...+.+.+..+....+++++...+-+.+++.++.
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ 76 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAER 76 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666555566665555555444444444444443
No 483
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.90 E-value=1.2e+02 Score=26.86 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (942)
.+...+.+...+.+++.++..++.++.....+..+|.+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 334445566666666666555555555555555555543
No 484
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=60.60 E-value=12 Score=38.34 Aligned_cols=134 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCC-CCCCCCcchhHHHHH
Q 002286 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN-HVELPWNKVTVLFNL 531 (942)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 531 (942)
..+...++.+++..|..-+.+++......+-... ..... ..........+..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~-------------------------~e~~~~~~~~~~~r~~~~~n~ 281 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDRE-------------------------KEQENRIPPLRELRFSIRRNL 281 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccc-------------------------cccccccccccccccccccch
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHH
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (942)
+.+-...+.+..|+..-..++..+++...++++.+..+....++++|+..+..+....|++..+...+...-....++..
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred HHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
No 485
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.48 E-value=1.9e+02 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCCCCC
Q 002286 820 ENAVRVFSHLSAASNLH 836 (942)
Q Consensus 820 ~~a~~~~~~l~~~~~~~ 836 (942)
++|..-|-.|.+.-.++
T Consensus 104 e~AM~~FV~Lldr~C~~ 120 (469)
T KOG3878|consen 104 EQAMEGFVDLLDRMCSA 120 (469)
T ss_pred HHHHHHHHHHHHhcchh
Confidence 45666676666654443
No 486
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=60.42 E-value=1.3e+02 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
+....|...+.+.++.+....+++++...+....+..+|..
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555444444444444443
No 487
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=60.41 E-value=1.9e+02 Score=28.93 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-
Q 002286 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQ- 916 (942)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 916 (942)
+++-.+.+..|...+.+.+..+....+++++...+-+++++.+++.+.+--...+.+-++..+.-..+.++|..+...+
T Consensus 27 ~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 27 YKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhh
Q 002286 917 EEHFQRVKARIFY 929 (942)
Q Consensus 917 ~~~~~~~~~~~~~ 929 (942)
.+.+++-++....
T Consensus 107 ~~~ie~Ek~~a~~ 119 (250)
T PRK14474 107 LEQLEREKQEFFK 119 (250)
T ss_pred HHHHHHHHHHHHH
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.21 E-value=2.3e+02 Score=30.09 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 272 (942)
|+....++.....++++.+--.+.....+.......++...+..|-.++.-... ..-.+..-.-.-..+|.....-+
T Consensus 148 we~~DFvyqfq~f~~yr~n~~krn~deie~l~si~sn~wniy~iLnil~slv~k---sqi~~ql~~~~s~~dp~~va~~~ 224 (525)
T KOG3677|consen 148 WENQDFVYQFQEFKQYRANAEKRNKDEIENLQSIFSNNWNIYWILNILHSLVDK---SQISIQLTASVSNKDPALVALIF 224 (525)
T ss_pred hhHHHHHHHHHHHHHHhcChhhcCHHHHHHHHhcccccchHHHHHHHHHHHHHH---HHHHHHHHHHhcCCChhhhhhhh
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 352 (942)
.....|...|-+ ++..+-+.+.-.|++....+..+..-+..-.......+-+..|.+|
T Consensus 225 g~s~~y~~Lgyf----------------------sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFay 282 (525)
T KOG3677|consen 225 GASQPYANLGYF----------------------SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAY 282 (525)
T ss_pred ccccHHHhhhHH----------------------HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHH
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC--cHHHHHHHHHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPR--DAQAFIDLGELL 420 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~ 420 (942)
..+++|.+|+..|-.++-.-...-......+.+|...+ ..+.--..+.-++...|. +......++..+
T Consensus 283 Lmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 283 LMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHh
No 489
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=59.91 E-value=2.1e+02 Score=29.44 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
+.++.+..-..+.+|.++..+++....++........+...-..-| -|-..+....+-..+ ..++ +.+.++.++
T Consensus 50 ~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L--~~p~ad~~~~~~~~~-~~~~---~~~Ll~~~E 123 (301)
T TIGR03362 50 DTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRL--APPPADRVADYQELL-AQAD---WAALLQRVE 123 (301)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccC--CCCCHHHHHHHHHHH-hCCC---HHHHHHHHH
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------cCCCCCchhHHHHHH-------------
Q 002286 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA--------------VTNHGPTKSHSYYNL------------- 311 (942)
Q Consensus 259 ~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~~l------------- 311 (942)
+.+..+|.-.+.....+.++...| ++.+.......+. ....+--+..+..++
T Consensus 124 ~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~ 202 (301)
T TIGR03362 124 QSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVA 202 (301)
T ss_pred HHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHhccccccccccc
Q ss_pred -----------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 312 -----------------ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 312 -----------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+......|..+.|+..++..........+.....+.++.++...|.++-|...|..+.+
T Consensus 203 ~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 203 PVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred ccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 490
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.75 E-value=16 Score=37.32 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcC----------------CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEIN----------------KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
+...+..++++.|..-|.++..... ...........++.+-+..+.+..|+.....++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhH
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (942)
..+++..+..+....++++|++.+..+....|++......+...- ...++..
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
No 491
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=59.73 E-value=47 Score=35.76 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002286 864 EAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922 (942)
Q Consensus 864 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (942)
.++...+.+.+.+.+.++|++...+.|+.+.|-+++..+.|.+..+.++++.++-+-++
T Consensus 329 ~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (429)
T PRK00247 329 NAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKK 387 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
No 492
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=59.51 E-value=16 Score=22.45 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
...++.+..++.+.|+++.|..+|+.+.+.+
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
No 493
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.44 E-value=1.7e+02 Score=28.11 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHH
Q 002286 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (942)
Q Consensus 169 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 248 (942)
..-+.+.+...+|+...+.-++.+|.+ ...+..+-..+.-.|++++|...++-+-.+.|+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd-a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~------------------- 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD-AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ------------------- 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc-ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-------------------
Q ss_pred hHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCch
Q 002286 249 GIRKGMEKMQRAFEI------------------YPYCAMALNYLANHFFFTG-QHFLVEQLTETALAVTNHGPTK 304 (942)
Q Consensus 249 ~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~ 304 (942)
+......|+..+.. +|....+...++......+ .-+.+..+-+.+++..+..+..
T Consensus 68 -~t~~a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 68 -DTVGASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
No 494
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.50 E-value=79 Score=26.97 Aligned_cols=68 Identities=18% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-------------HHHHHHHHHHHHHcccHHHHHHHH----HHHHHh
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-------------AQILLYLARTHYEAEQWQDCKKSL----LRAIHL 779 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~ 779 (942)
+..+|...+..+++-.++-.|++|+.....-.. +....+|+..|...|+.+-.++++ ++++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q ss_pred CCCCh
Q 002286 780 APSNY 784 (942)
Q Consensus 780 ~p~~~ 784 (942)
-|.-|
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
No 495
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=58.19 E-value=83 Score=24.20 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002286 871 QQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQ 916 (942)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (942)
.+.+.++.+++++..++...+.-+++.+.+.++..++-|.+|.+..
T Consensus 37 kEekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrKALe 82 (86)
T PF15437_consen 37 KEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALE 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 496
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.01 E-value=2.6e+02 Score=29.84 Aligned_cols=386 Identities=11% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
.+.+-..+.-|..+..+..+..-+.+--..+.|..+|+..-... ...+..--......-.|....++...++...-.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK---GKVYREAFNGLIGASSYSVGKKLVAEMISQKMT 270 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---heeeHHhhhhhhhHHHhhccHHHHHHHHHhhcC
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh-----
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI----- 263 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~----- 263 (942)
..-.....+-.|..+.|+++.|+..+.+++.. +|.-...++.+-......+. ..-+...+......
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp---~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP---QKVASSWINDIQNSLTGKT 347 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc---hhhhHHHHHHHHHhhccCc
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 002286 264 ----YPYCAMALNYLANHFFFTGQHFLVEQLTETAL-----AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (942)
Q Consensus 264 ----~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 334 (942)
.|++......-..++....+..-|.++..-.. ...+......-.+..+-...+.....+.-...|..++
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV-- 425 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV-- 425 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q ss_pred cCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH-------------------------hCCCcHHHHHHHHHHHHHc
Q 002286 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-------------------------IYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------------------------~~p~~~~~~~~la~~~~~~ 389 (942)
|........+....++.-+.+.+..++.++.. .+|..+.--..-....--.
T Consensus 426 ----P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 426 ----PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred ----cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002286 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 390 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
-++.++.+.-..-.....-.+.....++.++ ..|.+++|-+.+.-..+...+........++..+.......+....|+
T Consensus 502 ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (942)
..++-++..+ .+..--.--+++....-.++-.+.+
T Consensus 582 ~~lQ~a~~~n---------------------------------------------~~~~E~La~RI~e~f~iNqeq~~~l 616 (625)
T KOG4422|consen 582 EVLQLASAFN---------------------------------------------LPICEGLAQRIMEDFAINQEQKEAL 616 (625)
T ss_pred HHHHHHHHcC---------------------------------------------chhhhHHHHHHHHhcCcCHHHHHHH
Q ss_pred HHHHHhCCC
Q 002286 549 RLILFKYQD 557 (942)
Q Consensus 549 ~~~l~~~p~ 557 (942)
.....+-|+
T Consensus 617 s~l~~L~~~ 625 (625)
T KOG4422|consen 617 SNLTALTSD 625 (625)
T ss_pred hhhhhhcCC
No 497
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=57.95 E-value=1.6e+02 Score=32.06 Aligned_cols=130 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (942)
+..+=++..+..|-+....-..+.......+.+.+..++-+.+. .|.... ..+.....+.+.++..|..+.|+.+...
T Consensus 51 ~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 51 YSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRH-SPNCSY-LLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHc-Cccccc-ccCccHHHHHHHHHhcCCHHHHHHHHhC
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 740 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 740 al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
=+. |+--+|......|...+.+.|++..|.++...++...--+....+.|++
T Consensus 129 ~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 129 RLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred hhh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
No 498
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.87 E-value=2.1e+02 Score=28.60 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-
Q 002286 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQ- 916 (942)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 916 (942)
+++-......|...+.+.+..+....+++++...+.+.+++.+++....--...+.+-++..+.-..+.+++.++...+
T Consensus 27 ~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a 106 (246)
T TIGR03321 27 YRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKW 106 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHhhhhhh
Q 002286 917 ----EEHFQRVKARIFY 929 (942)
Q Consensus 917 ----~~~~~~~~~~~~~ 929 (942)
+...++..++++.
T Consensus 107 ~~~ie~E~~~a~~~l~~ 123 (246)
T TIGR03321 107 QEALRREQAALSDELRR 123 (246)
T ss_pred HHHHHHHHHHHHHHHHH
No 499
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=56.86 E-value=50 Score=24.93 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002286 871 QQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 908 (942)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (942)
....+++...++.-.+++++++++++.+...+++.++.
T Consensus 16 ~d~~~kLka~k~eLk~~ee~r~e~e~~~~~~erk~rEK 53 (70)
T PF13025_consen 16 EDVLAKLKAKKQELKAEEEKRKEEERARRREERKEREK 53 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 500
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.81 E-value=1.3e+02 Score=31.80 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
.++...... ...-.+.++.=++...++. .++..++..|...|+.+.|.+.|.++..-..........+.++
T Consensus 117 ~WvE~~~~~---a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~ 193 (466)
T KOG0686|consen 117 KWVETNNKK---AVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNL 193 (466)
T ss_pred HHHHHhhHH---HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----cCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKE-----INKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
..+-...|+|..-..+-.++... .....-.......-|.+.+..++|..|..+|
T Consensus 194 i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 194 ILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred HHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Done!