Query 002286
Match_columns 942
No_of_seqs 1477 out of 4933
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.7E-40 1.9E-44 382.3 45.3 505 197-795 84-595 (597)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-39 6.2E-44 355.4 45.6 383 346-797 3-386 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-39 3.3E-43 349.6 49.9 383 133-573 4-387 (388)
4 2xpi_A Anaphase-promoting comp 100.0 6.5E-40 2.2E-44 381.8 40.3 486 126-725 82-595 (597)
5 3fp2_A TPR repeat-containing p 100.0 9E-35 3.1E-39 333.8 42.3 316 351-791 169-503 (537)
6 2gw1_A Mitochondrial precursor 100.0 1.2E-34 4.3E-39 330.7 40.4 426 128-601 6-491 (514)
7 3fp2_A TPR repeat-containing p 100.0 3E-34 1E-38 329.4 39.3 452 81-597 23-500 (537)
8 2gw1_A Mitochondrial precursor 100.0 1E-33 3.4E-38 323.2 43.2 440 304-793 5-492 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 1E-31 3.6E-36 300.6 43.8 379 112-625 10-413 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 2E-31 6.8E-36 298.3 41.2 330 88-458 24-373 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 8.2E-30 2.8E-34 275.7 44.0 345 128-607 3-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 2.3E-29 7.7E-34 272.2 41.0 323 83-420 3-350 (359)
13 4g1t_A Interferon-induced prot 100.0 1.9E-30 6.6E-35 292.1 31.8 275 127-437 50-362 (472)
14 4g1t_A Interferon-induced prot 100.0 1.5E-29 5E-34 285.0 37.1 363 306-743 52-459 (472)
15 3hym_B Cell division cycle pro 100.0 6.9E-28 2.3E-32 257.1 35.2 302 118-426 12-322 (330)
16 2xm6_A Protein corresponding t 100.0 5.5E-26 1.9E-30 255.8 47.7 393 303-784 37-472 (490)
17 2xm6_A Protein corresponding t 100.0 1.5E-25 5.3E-30 252.2 49.1 397 113-591 26-470 (490)
18 1fch_A Peroxisomal targeting s 100.0 2.9E-27 9.8E-32 256.6 30.4 289 109-440 40-361 (368)
19 3hym_B Cell division cycle pro 100.0 1.6E-26 5.3E-31 246.6 34.1 293 83-393 22-322 (330)
20 2ooe_A Cleavage stimulation fa 100.0 1.5E-25 5.2E-30 255.0 43.0 430 117-625 2-495 (530)
21 2ooe_A Cleavage stimulation fa 100.0 1.9E-25 6.5E-30 254.2 42.6 395 151-625 2-457 (530)
22 1fch_A Peroxisomal targeting s 100.0 1.8E-26 6E-31 250.4 28.3 311 137-476 34-358 (368)
23 4eqf_A PEX5-related protein; a 99.9 1.8E-25 6.2E-30 241.9 27.8 277 114-434 47-352 (365)
24 4eqf_A PEX5-related protein; a 99.9 1.5E-25 5.1E-30 242.6 26.0 294 149-476 48-355 (365)
25 3cv0_A Peroxisome targeting si 99.9 8.2E-25 2.8E-29 232.9 29.3 271 127-441 20-318 (327)
26 2h6f_A Protein farnesyltransfe 99.9 2E-25 6.7E-30 237.8 24.0 261 120-420 89-363 (382)
27 2h6f_A Protein farnesyltransfe 99.9 4.5E-25 1.5E-29 235.0 25.5 258 518-797 90-366 (382)
28 3cv0_A Peroxisome targeting si 99.9 1.4E-24 4.7E-29 231.1 25.3 273 449-783 22-319 (327)
29 1xi4_A Clathrin heavy chain; a 99.9 2.9E-20 1E-24 215.0 55.9 460 36-619 981-1455(1630)
30 1xi4_A Clathrin heavy chain; a 99.9 7.6E-20 2.6E-24 211.6 58.7 382 127-617 984-1379(1630)
31 3e4b_A ALGK; tetratricopeptide 99.9 1.8E-23 6.3E-28 230.8 26.9 386 309-779 7-421 (452)
32 3u4t_A TPR repeat-containing p 99.9 2E-23 6.9E-28 215.4 24.3 252 127-385 2-264 (272)
33 3uq3_A Heat shock protein STI1 99.9 4.9E-23 1.7E-27 210.6 25.5 240 524-793 4-256 (258)
34 3u4t_A TPR repeat-containing p 99.9 2.4E-23 8.2E-28 214.8 22.5 250 524-793 2-264 (272)
35 2pl2_A Hypothetical conserved 99.9 1.2E-22 4E-27 200.4 24.2 200 125-332 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.9 2E-22 6.7E-27 206.1 25.8 239 128-418 5-255 (258)
37 3e4b_A ALGK; tetratricopeptide 99.9 1.5E-22 5.1E-27 223.6 26.5 378 134-621 9-420 (452)
38 2pl2_A Hypothetical conserved 99.9 2.3E-22 7.8E-27 198.3 22.9 197 83-295 5-212 (217)
39 3mkr_A Coatomer subunit epsilo 99.9 2.9E-21 9.9E-26 199.3 31.6 190 48-268 7-200 (291)
40 3mkr_A Coatomer subunit epsilo 99.9 1.4E-21 4.7E-26 201.7 29.2 260 456-787 7-272 (291)
41 3sf4_A G-protein-signaling mod 99.9 4E-22 1.4E-26 219.3 23.7 318 126-470 7-369 (406)
42 3sf4_A G-protein-signaling mod 99.9 4E-22 1.4E-26 219.3 22.1 248 339-623 6-297 (406)
43 4a1s_A PINS, partner of inscut 99.9 3E-21 1E-25 212.6 20.9 279 448-782 48-375 (411)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.4E-20 4.8E-25 194.4 24.1 248 106-365 17-269 (275)
45 4a1s_A PINS, partner of inscut 99.9 8.5E-21 2.9E-25 209.0 22.6 287 302-625 45-375 (411)
46 3ro2_A PINS homolog, G-protein 99.9 8.4E-21 2.9E-25 202.6 21.7 280 448-783 5-336 (338)
47 3ro2_A PINS homolog, G-protein 99.9 1.4E-20 4.7E-25 201.0 22.6 158 321-478 159-333 (338)
48 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-20 4.9E-25 190.2 20.1 217 39-279 22-238 (243)
49 2ond_A Cleavage stimulation fa 99.9 7E-20 2.4E-24 191.8 25.8 256 111-384 33-305 (308)
50 2q7f_A YRRB protein; TPR, prot 99.9 2.8E-20 9.7E-25 188.0 22.1 215 127-385 22-236 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.9 7E-21 2.4E-25 196.7 16.5 253 135-399 12-269 (275)
52 1ouv_A Conserved hypothetical 99.8 7.3E-19 2.5E-23 181.0 31.6 233 124-412 2-258 (273)
53 1ouv_A Conserved hypothetical 99.8 7.6E-19 2.6E-23 180.8 31.3 227 91-377 7-257 (273)
54 4e6h_A MRNA 3'-END-processing 99.8 4.9E-17 1.7E-21 184.3 48.2 450 112-629 50-577 (679)
55 3vtx_A MAMA; tetratricopeptide 99.8 8.8E-20 3E-24 175.2 21.7 171 83-268 5-175 (184)
56 4abn_A Tetratricopeptide repea 99.8 1.2E-19 4.1E-24 201.6 25.6 238 83-328 54-315 (474)
57 2vq2_A PILW, putative fimbrial 99.8 8.1E-19 2.8E-23 174.8 28.8 212 198-416 9-222 (225)
58 2ho1_A Type 4 fimbrial biogene 99.8 1.7E-19 5.8E-24 183.4 24.1 209 559-788 37-247 (252)
59 2ho1_A Type 4 fimbrial biogene 99.8 4.5E-19 1.5E-23 180.2 26.7 211 198-415 38-248 (252)
60 2vq2_A PILW, putative fimbrial 99.8 7E-19 2.4E-23 175.3 27.0 215 123-381 3-221 (225)
61 3vtx_A MAMA; tetratricopeptide 99.8 6.7E-19 2.3E-23 169.0 24.1 168 126-297 3-170 (184)
62 2ond_A Cleavage stimulation fa 99.8 1.7E-18 6E-23 181.2 29.0 228 542-787 33-278 (308)
63 3ulq_A Response regulator aspa 99.8 1.5E-18 5E-23 188.6 28.1 190 274-463 109-318 (383)
64 4abn_A Tetratricopeptide repea 99.8 3.7E-19 1.3E-23 197.7 23.5 222 141-399 81-315 (474)
65 3ulq_A Response regulator aspa 99.8 8.5E-19 2.9E-23 190.5 23.7 247 306-591 104-371 (383)
66 4e6h_A MRNA 3'-END-processing 99.8 1.3E-15 4.4E-20 172.8 49.4 228 542-787 326-578 (679)
67 4i17_A Hypothetical protein; T 99.8 4.2E-18 1.4E-22 169.9 24.2 218 159-420 4-224 (228)
68 4i17_A Hypothetical protein; T 99.8 3.5E-18 1.2E-22 170.4 22.2 207 84-315 8-224 (228)
69 3qky_A Outer membrane assembly 99.8 3E-18 1E-22 174.9 21.7 218 122-396 9-252 (261)
70 4gyw_A UDP-N-acetylglucosamine 99.8 2.9E-18 1E-22 197.1 22.0 171 123-297 4-174 (723)
71 1b89_A Protein (clathrin heavy 99.8 8.4E-19 2.9E-23 183.0 15.4 392 140-614 15-409 (449)
72 3qky_A Outer membrane assembly 99.8 7.7E-18 2.6E-22 171.9 20.0 213 520-799 10-247 (261)
73 4gyw_A UDP-N-acetylglucosamine 99.8 5.2E-18 1.8E-22 195.0 20.5 171 81-266 7-177 (723)
74 3q15_A PSP28, response regulat 99.8 2.5E-17 8.6E-22 178.3 22.9 240 344-622 103-365 (378)
75 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 180.8 12.5 323 108-476 17-354 (449)
76 3q15_A PSP28, response regulat 99.8 4.3E-17 1.5E-21 176.5 24.2 238 449-743 102-365 (378)
77 3dra_A Protein farnesyltransfe 99.8 5E-16 1.7E-20 158.0 30.1 220 112-332 51-285 (306)
78 3nf1_A KLC 1, kinesin light ch 99.8 5.1E-18 1.8E-22 178.6 15.7 253 338-625 23-310 (311)
79 3nf1_A KLC 1, kinesin light ch 99.8 7.8E-18 2.7E-22 177.2 16.6 253 268-591 27-310 (311)
80 3dra_A Protein farnesyltransfe 99.8 4E-16 1.4E-20 158.7 27.8 241 140-418 44-301 (306)
81 4ga2_A E3 SUMO-protein ligase 99.7 6.6E-18 2.2E-22 154.8 12.9 139 107-246 10-149 (150)
82 1hz4_A MALT regulatory protein 99.7 6.7E-16 2.3E-20 167.0 29.7 278 129-441 15-325 (373)
83 1hz4_A MALT regulatory protein 99.7 7.1E-16 2.4E-20 166.8 28.7 281 87-406 11-323 (373)
84 4ga2_A E3 SUMO-protein ligase 99.7 6.9E-18 2.4E-22 154.7 10.1 146 134-283 3-149 (150)
85 1qqe_A Vesicular transport pro 99.7 7.9E-17 2.7E-21 166.9 18.8 256 112-420 3-284 (292)
86 3as5_A MAMA; tetratricopeptide 99.7 4E-16 1.4E-20 149.7 21.2 172 82-268 7-178 (186)
87 2pzi_A Probable serine/threoni 99.7 9.7E-17 3.3E-21 186.5 19.8 200 122-332 388-596 (681)
88 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.9E-16 1.3E-20 154.7 21.3 210 524-785 3-219 (225)
89 3as5_A MAMA; tetratricopeptide 99.7 4E-16 1.4E-20 149.7 19.8 173 39-232 7-179 (186)
90 1qqe_A Vesicular transport pro 99.7 3.1E-16 1E-20 162.4 19.8 233 391-685 32-284 (292)
91 3urz_A Uncharacterized protein 99.7 2.1E-16 7E-21 154.4 17.2 132 127-260 3-150 (208)
92 3urz_A Uncharacterized protein 99.7 2.9E-16 1E-20 153.3 18.3 169 39-229 3-189 (208)
93 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.3E-16 1.8E-20 153.7 20.3 207 127-409 3-217 (225)
94 4gco_A Protein STI-1; structur 99.7 2.1E-16 7.1E-21 139.5 14.3 121 119-240 4-124 (126)
95 2pzi_A Probable serine/threoni 99.7 2.9E-16 9.9E-21 182.5 19.7 172 107-283 404-583 (681)
96 3dss_A Geranylgeranyl transfer 99.7 2.5E-14 8.6E-19 145.8 29.1 246 111-420 47-319 (331)
97 3dss_A Geranylgeranyl transfer 99.7 4.6E-14 1.6E-18 143.9 28.4 251 139-457 40-318 (331)
98 3edt_B KLC 2, kinesin light ch 99.7 1.3E-15 4.5E-20 157.6 17.4 222 107-332 21-279 (283)
99 4gco_A Protein STI-1; structur 99.7 8.8E-16 3E-20 135.4 13.5 122 666-794 4-125 (126)
100 3q7a_A Farnesyltransferase alp 99.7 4.4E-14 1.5E-18 144.5 27.7 172 112-284 72-258 (349)
101 3edt_B KLC 2, kinesin light ch 99.7 1.8E-15 6.1E-20 156.5 17.8 184 280-463 13-227 (283)
102 2r5s_A Uncharacterized protein 99.6 1.3E-15 4.5E-20 144.3 14.1 167 124-295 2-171 (176)
103 3gyz_A Chaperone protein IPGC; 99.6 7.6E-16 2.6E-20 139.7 11.9 119 112-231 20-138 (151)
104 2r5s_A Uncharacterized protein 99.6 9.4E-16 3.2E-20 145.3 12.8 172 555-743 2-173 (176)
105 3qou_A Protein YBBN; thioredox 99.6 8.5E-15 2.9E-19 150.8 18.7 169 124-296 113-283 (287)
106 3q7a_A Farnesyltransferase alp 99.6 7.4E-14 2.5E-18 142.8 24.1 255 140-418 66-345 (349)
107 3gyz_A Chaperone protein IPGC; 99.6 2.7E-15 9.3E-20 136.0 10.4 123 655-784 16-138 (151)
108 2vsy_A XCC0866; transferase, g 99.6 1.4E-14 4.8E-19 166.0 18.8 164 108-275 3-169 (568)
109 3qou_A Protein YBBN; thioredox 99.6 3.3E-14 1.1E-18 146.4 19.3 174 553-743 111-284 (287)
110 2vgx_A Chaperone SYCD; alterna 99.6 7.1E-15 2.4E-19 133.9 11.6 121 113-234 6-126 (148)
111 2ifu_A Gamma-SNAP; membrane fu 99.6 3.4E-14 1.2E-18 148.2 17.6 102 306-409 117-227 (307)
112 2ifu_A Gamma-SNAP; membrane fu 99.6 5.2E-14 1.8E-18 146.8 17.9 213 317-594 3-229 (307)
113 4f3v_A ESX-1 secretion system 99.6 2.4E-14 8.2E-19 141.3 14.0 210 131-383 10-248 (282)
114 1p5q_A FKBP52, FK506-binding p 99.6 1.4E-15 4.8E-20 160.4 4.6 183 108-295 79-292 (336)
115 2xcb_A PCRH, regulatory protei 99.5 2.4E-14 8.3E-19 129.9 12.0 125 115-240 5-129 (142)
116 2vgx_A Chaperone SYCD; alterna 99.5 4.3E-14 1.5E-18 128.7 12.9 122 661-789 7-128 (148)
117 4f3v_A ESX-1 secretion system 99.5 6.7E-14 2.3E-18 138.2 13.8 206 202-418 12-249 (282)
118 3rjv_A Putative SEL1 repeat pr 99.5 4.4E-13 1.5E-17 130.9 19.3 179 542-743 3-197 (212)
119 2vsy_A XCC0866; transferase, g 99.5 2.1E-13 7.3E-18 156.1 19.2 165 141-312 2-169 (568)
120 2fo7_A Synthetic consensus TPR 99.5 9.9E-13 3.4E-17 118.1 19.3 134 129-266 2-135 (136)
121 2uy1_A Cleavage stimulation fa 99.5 4.8E-11 1.6E-15 131.9 36.6 208 359-621 196-412 (493)
122 2xcb_A PCRH, regulatory protei 99.5 1.8E-13 6E-18 124.1 12.7 125 662-793 5-129 (142)
123 3rjv_A Putative SEL1 repeat pr 99.5 9.9E-13 3.4E-17 128.4 19.0 174 112-297 4-197 (212)
124 2fo7_A Synthetic consensus TPR 99.5 1.3E-12 4.4E-17 117.4 18.2 134 85-230 3-136 (136)
125 3upv_A Heat shock protein STI1 99.5 4.5E-13 1.5E-17 118.7 14.4 116 126-242 2-123 (126)
126 1p5q_A FKBP52, FK506-binding p 99.5 7.2E-14 2.5E-18 147.2 10.7 149 111-263 130-294 (336)
127 2e2e_A Formate-dependent nitri 99.5 4.8E-13 1.6E-17 126.8 15.2 130 106-236 22-154 (177)
128 2c2l_A CHIP, carboxy terminus 99.5 2.4E-13 8.1E-18 139.4 13.1 197 125-333 1-198 (281)
129 3mv2_B Coatomer subunit epsilo 99.5 1.1E-12 3.9E-17 131.2 17.3 227 526-788 46-291 (310)
130 2c2l_A CHIP, carboxy terminus 99.4 6.4E-13 2.2E-17 136.1 14.6 195 83-297 4-199 (281)
131 1dce_A Protein (RAB geranylger 99.4 3.9E-12 1.3E-16 142.7 22.2 175 111-286 46-244 (567)
132 3upv_A Heat shock protein STI1 99.4 1.6E-12 5.3E-17 115.1 14.3 118 672-796 1-124 (126)
133 1a17_A Serine/threonine protei 99.4 6.4E-12 2.2E-16 117.6 18.9 132 128-263 13-146 (166)
134 2e2e_A Formate-dependent nitri 99.4 8.5E-13 2.9E-17 125.1 12.6 130 138-271 20-152 (177)
135 3sz7_A HSC70 cochaperone (SGT) 99.4 1.3E-12 4.4E-17 122.0 13.6 117 124-241 7-123 (164)
136 3mv2_B Coatomer subunit epsilo 99.4 4.2E-11 1.4E-15 119.9 24.9 246 48-333 21-281 (310)
137 2lni_A Stress-induced-phosphop 99.4 1.8E-12 6.3E-17 116.0 13.8 121 124-245 12-132 (133)
138 2vyi_A SGTA protein; chaperone 99.4 3.5E-12 1.2E-16 113.7 14.7 122 124-246 8-129 (131)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6.6E-12 2.2E-16 123.2 18.0 132 130-268 8-155 (213)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.4 8.9E-12 3E-16 122.3 18.8 134 83-230 6-154 (213)
141 2uy1_A Cleavage stimulation fa 99.4 1E-09 3.5E-14 121.2 37.0 209 541-779 195-413 (493)
142 1hxi_A PEX5, peroxisome target 99.4 1.9E-12 6.5E-17 113.0 12.0 104 128-232 17-120 (121)
143 3sz7_A HSC70 cochaperone (SGT) 99.4 6.4E-12 2.2E-16 117.2 16.4 116 671-793 7-122 (164)
144 2fbn_A 70 kDa peptidylprolyl i 99.4 5.7E-13 1.9E-17 128.9 9.4 151 135-288 11-176 (198)
145 1a17_A Serine/threonine protei 99.4 1.1E-11 3.6E-16 116.0 17.6 135 80-226 10-146 (166)
146 2fbn_A 70 kDa peptidylprolyl i 99.4 7.2E-13 2.5E-17 128.2 9.3 139 112-254 22-176 (198)
147 1na0_A Designed protein CTPR3; 99.4 1.5E-11 5E-16 108.5 17.1 120 124-244 4-124 (125)
148 2qfc_A PLCR protein; TPR, HTH, 99.4 1.3E-11 4.3E-16 127.8 19.2 193 20-226 54-266 (293)
149 4gcn_A Protein STI-1; structur 99.4 5.7E-12 1.9E-16 111.1 14.1 106 128-234 8-119 (127)
150 3q49_B STIP1 homology and U bo 99.4 8.3E-12 2.8E-16 112.4 14.9 120 123-243 4-128 (137)
151 2qfc_A PLCR protein; TPR, HTH, 99.4 3.4E-11 1.2E-15 124.6 21.1 182 555-749 71-272 (293)
152 4gcn_A Protein STI-1; structur 99.4 4.7E-12 1.6E-16 111.6 12.2 105 674-783 7-116 (127)
153 2lni_A Stress-induced-phosphop 99.4 1.3E-11 4.3E-16 110.5 14.9 122 158-283 12-133 (133)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7.4E-14 2.5E-18 153.9 0.1 176 109-289 201-406 (457)
155 1elw_A TPR1-domain of HOP; HOP 99.3 2.1E-11 7.3E-16 106.2 15.9 113 128-241 4-116 (118)
156 2vyi_A SGTA protein; chaperone 99.3 1.2E-11 4.1E-16 110.2 14.3 124 157-284 7-130 (131)
157 2hr2_A Hypothetical protein; a 99.3 4.6E-12 1.6E-16 112.4 10.9 103 129-232 12-137 (159)
158 3u3w_A Transcriptional activat 99.3 2.1E-11 7E-16 126.2 17.2 169 563-744 79-267 (293)
159 3u3w_A Transcriptional activat 99.3 3E-11 1E-15 125.0 17.5 171 274-444 81-272 (293)
160 2xev_A YBGF; tetratricopeptide 99.3 4.9E-11 1.7E-15 105.9 16.5 116 128-243 2-122 (129)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.6E-12 5.6E-17 143.1 8.2 148 110-261 250-413 (457)
162 2dba_A Smooth muscle cell asso 99.3 3.1E-11 1.1E-15 110.3 14.9 120 122-242 22-144 (148)
163 1dce_A Protein (RAB geranylger 99.3 1.3E-10 4.3E-15 130.5 22.8 174 143-323 44-244 (567)
164 3rkv_A Putative peptidylprolyl 99.3 1.7E-11 5.9E-16 113.9 13.3 116 128-244 11-145 (162)
165 1hxi_A PEX5, peroxisome target 99.3 2.3E-11 7.8E-16 106.1 13.1 101 164-268 19-119 (121)
166 1na0_A Designed protein CTPR3; 99.3 1.1E-10 3.6E-15 102.9 17.6 121 158-282 4-125 (125)
167 3rkv_A Putative peptidylprolyl 99.3 4.3E-11 1.5E-15 111.2 15.5 122 674-797 10-145 (162)
168 3q49_B STIP1 homology and U bo 99.3 3.8E-11 1.3E-15 107.9 14.6 118 156-277 3-125 (137)
169 2kck_A TPR repeat; tetratricop 99.3 2.3E-11 8E-16 104.8 12.3 106 124-230 2-110 (112)
170 4b4t_Q 26S proteasome regulato 99.3 2.3E-10 8E-15 126.3 23.3 175 378-589 57-246 (434)
171 1elw_A TPR1-domain of HOP; HOP 99.3 6.9E-11 2.4E-15 102.9 15.2 114 674-794 3-116 (118)
172 3gw4_A Uncharacterized protein 99.3 3.6E-11 1.2E-15 116.8 14.7 165 604-782 3-179 (203)
173 2hr2_A Hypothetical protein; a 99.3 2.2E-11 7.4E-16 108.1 11.5 106 162-270 11-138 (159)
174 3gw4_A Uncharacterized protein 99.2 1.3E-10 4.4E-15 112.8 16.7 158 317-477 4-176 (203)
175 1zu2_A Mitochondrial import re 99.2 3E-11 1E-15 106.8 10.7 105 104-232 12-126 (158)
176 2kck_A TPR repeat; tetratricop 99.2 5.1E-11 1.8E-15 102.6 12.0 110 670-784 1-111 (112)
177 2xev_A YBGF; tetratricopeptide 99.2 2.6E-10 8.9E-15 101.2 15.5 113 163-278 3-120 (129)
178 1elr_A TPR2A-domain of HOP; HO 99.2 2.3E-10 7.8E-15 101.7 15.1 119 673-797 2-125 (131)
179 2dba_A Smooth muscle cell asso 99.2 2.1E-10 7.1E-15 104.7 15.0 117 670-793 23-142 (148)
180 4b4t_Q 26S proteasome regulato 99.2 8.8E-10 3E-14 121.6 22.9 204 127-333 3-244 (434)
181 1elr_A TPR2A-domain of HOP; HO 99.2 1.7E-10 5.8E-15 102.6 13.3 117 127-244 3-125 (131)
182 2if4_A ATFKBP42; FKBP-like, al 99.2 2.5E-11 8.5E-16 127.8 8.2 138 127-268 178-333 (338)
183 1wao_1 Serine/threonine protei 99.2 7.8E-12 2.7E-16 138.1 4.1 136 128-267 6-154 (477)
184 1wao_1 Serine/threonine protei 99.2 4.8E-11 1.6E-15 131.8 9.8 141 630-790 8-161 (477)
185 1zu2_A Mitochondrial import re 99.2 9.9E-11 3.4E-15 103.6 9.8 111 142-277 16-134 (158)
186 3k9i_A BH0479 protein; putativ 99.2 4.5E-11 1.5E-15 103.8 7.5 88 108-195 4-94 (117)
187 3k9i_A BH0479 protein; putativ 99.1 6.7E-11 2.3E-15 102.7 7.9 95 140-235 2-99 (117)
188 2if4_A ATFKBP42; FKBP-like, al 99.1 6.4E-11 2.2E-15 124.6 8.5 141 80-232 176-334 (338)
189 1ihg_A Cyclophilin 40; ppiase 99.1 4E-10 1.4E-14 119.7 14.5 116 130-246 225-356 (370)
190 3ro3_A PINS homolog, G-protein 99.1 5E-10 1.7E-14 104.0 12.8 142 628-782 9-161 (164)
191 1ihg_A Cyclophilin 40; ppiase 99.1 9.7E-10 3.3E-14 116.7 14.2 124 162-289 223-362 (370)
192 3ro3_A PINS homolog, G-protein 99.0 1.7E-09 5.9E-14 100.3 12.1 133 345-477 12-158 (164)
193 2kat_A Uncharacterized protein 99.0 2.7E-09 9.3E-14 92.1 12.1 101 659-764 3-103 (115)
194 2kat_A Uncharacterized protein 98.9 9.1E-09 3.1E-13 88.8 11.4 84 112-195 3-86 (115)
195 3ma5_A Tetratricopeptide repea 98.9 9.1E-09 3.1E-13 85.9 9.9 90 670-764 2-91 (100)
196 1na3_A Designed protein CTPR2; 98.8 1.7E-08 5.9E-13 82.6 10.7 80 162-242 9-88 (91)
197 1na3_A Designed protein CTPR2; 98.8 2.2E-08 7.5E-13 82.0 11.3 85 126-211 7-91 (91)
198 1klx_A Cysteine rich protein B 98.8 7.2E-08 2.5E-12 85.9 15.1 120 655-791 9-136 (138)
199 2l6j_A TPR repeat-containing p 98.8 2.5E-09 8.4E-14 91.7 4.5 67 129-195 5-71 (111)
200 4g26_A Pentatricopeptide repea 98.8 2.5E-07 8.6E-12 102.0 21.2 187 595-790 28-215 (501)
201 2l6j_A TPR repeat-containing p 98.8 7.3E-09 2.5E-13 88.7 6.3 96 524-619 3-104 (111)
202 3ma5_A Tetratricopeptide repea 98.8 1.7E-08 6E-13 84.1 8.1 71 124-194 3-73 (100)
203 2kc7_A BFR218_protein; tetratr 98.7 2.4E-08 8.3E-13 83.3 7.6 89 132-229 4-93 (99)
204 4g26_A Pentatricopeptide repea 98.7 1E-06 3.6E-11 97.0 22.3 183 562-762 29-222 (501)
205 1klx_A Cysteine rich protein B 98.7 4.3E-07 1.5E-11 80.8 15.2 121 107-238 8-136 (138)
206 2kc7_A BFR218_protein; tetratr 98.7 3.7E-08 1.3E-12 82.1 7.7 91 166-268 4-95 (99)
207 3ly7_A Transcriptional activat 98.7 5.4E-07 1.9E-11 91.7 17.4 144 120-268 186-344 (372)
208 3ly7_A Transcriptional activat 98.6 2.8E-07 9.7E-12 93.7 13.7 158 27-195 181-343 (372)
209 3u64_A Protein TP_0956; tetrat 98.6 6.7E-06 2.3E-10 79.8 22.4 106 520-625 147-272 (301)
210 2v5f_A Prolyl 4-hydroxylase su 98.6 4.6E-07 1.6E-11 75.8 11.7 85 712-797 3-92 (104)
211 3n71_A Histone lysine methyltr 98.5 4.5E-07 1.5E-11 98.9 13.6 127 277-403 318-462 (490)
212 3bee_A Putative YFRE protein; 98.5 3.1E-07 1.1E-11 74.3 9.0 72 124-195 2-76 (93)
213 3n71_A Histone lysine methyltr 98.5 9.7E-07 3.3E-11 96.3 15.3 128 349-476 316-463 (490)
214 3u64_A Protein TP_0956; tetrat 98.5 1E-05 3.6E-10 78.5 20.5 193 543-746 50-272 (301)
215 1pc2_A Mitochondria fission pr 98.5 1.2E-06 4E-11 76.5 11.3 96 144-239 14-113 (152)
216 3bee_A Putative YFRE protein; 98.4 1.6E-06 5.4E-11 70.1 10.4 72 158-230 2-76 (93)
217 1pc2_A Mitochondria fission pr 98.3 3.9E-06 1.3E-10 73.2 11.1 89 107-195 11-104 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.1 1.6E-05 5.5E-10 66.3 10.9 77 162-238 5-87 (104)
219 1nzn_A CGI-135 protein, fissio 98.0 5.5E-05 1.9E-09 63.3 10.8 97 144-240 17-117 (126)
220 3qww_A SET and MYND domain-con 98.0 2.5E-05 8.5E-10 83.7 10.8 104 460-598 310-426 (433)
221 1nzn_A CGI-135 protein, fissio 97.9 5.6E-05 1.9E-09 63.2 10.2 95 693-793 19-117 (126)
222 3qww_A SET and MYND domain-con 97.9 7.3E-05 2.5E-09 80.1 12.9 88 355-442 311-415 (433)
223 3qwp_A SET and MYND domain-con 97.9 0.0001 3.5E-09 79.2 13.5 106 457-597 296-414 (429)
224 3qwp_A SET and MYND domain-con 97.9 9.7E-05 3.3E-09 79.3 13.1 108 352-459 297-424 (429)
225 3ffl_A Anaphase-promoting comp 97.6 0.00023 7.9E-09 62.3 9.5 114 127-241 19-165 (167)
226 4h7y_A Dual specificity protei 97.5 0.0018 6.1E-08 55.2 13.2 57 209-268 72-128 (161)
227 4h7y_A Dual specificity protei 97.5 0.00097 3.3E-08 56.8 11.5 109 123-233 8-130 (161)
228 1y8m_A FIS1; mitochondria, unk 97.4 0.0041 1.4E-07 52.8 14.2 80 712-793 37-120 (144)
229 3o48_A Mitochondria fission 1 97.4 0.0012 4.2E-08 55.2 10.1 80 712-793 38-121 (134)
230 4ady_A RPN2, 26S proteasome re 97.3 0.39 1.3E-05 55.4 35.7 412 44-476 149-588 (963)
231 1y8m_A FIS1; mitochondria, unk 97.3 0.0053 1.8E-07 52.1 13.2 81 159-239 36-119 (144)
232 3o48_A Mitochondria fission 1 97.3 0.0026 8.9E-08 53.2 10.8 81 161-241 39-122 (134)
233 3ffl_A Anaphase-promoting comp 97.2 0.00088 3E-08 58.7 8.1 103 655-760 34-165 (167)
234 3txn_A 26S proteasome regulato 97.1 0.064 2.2E-06 55.7 21.4 295 524-833 18-344 (394)
235 3txn_A 26S proteasome regulato 96.9 0.34 1.1E-05 50.4 25.2 173 41-227 20-211 (394)
236 3kae_A CDC27, possible protein 96.7 0.27 9.1E-06 42.6 21.2 99 306-412 34-150 (242)
237 4ady_A RPN2, 26S proteasome re 96.7 1.4 4.9E-05 50.9 45.4 44 200-245 233-276 (963)
238 3spa_A Mtrpol, DNA-directed RN 96.5 0.026 9E-07 65.0 14.5 114 674-789 126-240 (1134)
239 1qsa_A Protein (soluble lytic 96.4 0.87 3E-05 50.8 25.4 144 41-214 7-153 (618)
240 4gns_B Protein CSD3, chitin bi 96.3 0.75 2.6E-05 52.2 24.8 111 111-223 266-397 (754)
241 3kae_A CDC27, possible protein 96.3 0.054 1.9E-06 46.7 11.6 121 124-270 29-150 (242)
242 3spa_A Mtrpol, DNA-directed RN 95.7 0.043 1.5E-06 63.3 10.9 13 655-667 179-191 (1134)
243 4b4t_R RPN7, 26S proteasome re 95.5 0.1 3.6E-06 55.8 12.9 112 675-788 131-246 (429)
244 4gns_B Protein CSD3, chitin bi 94.8 0.072 2.4E-06 60.4 9.1 59 130-188 339-397 (754)
245 1qsa_A Protein (soluble lytic 94.3 8.3 0.00028 43.0 35.1 212 346-582 218-436 (618)
246 3mkq_A Coatomer beta'-subunit; 94.3 3.6 0.00012 48.5 23.3 101 135-260 606-707 (814)
247 4b4t_P 26S proteasome regulato 93.6 2.5 8.5E-05 45.2 18.0 102 376-477 137-247 (445)
248 3mkq_A Coatomer beta'-subunit; 93.4 2.4 8E-05 50.1 19.5 75 309-402 633-707 (814)
249 1zbp_A Hypothetical protein VP 93.3 1.5 5.1E-05 42.1 13.6 56 173-229 8-63 (273)
250 1zbp_A Hypothetical protein VP 93.1 0.48 1.6E-05 45.4 9.9 117 107-230 10-133 (273)
251 4b4t_R RPN7, 26S proteasome re 92.9 0.57 2E-05 50.0 11.7 120 108-227 111-238 (429)
252 4b4t_S RPN3, 26S proteasome re 92.6 0.42 1.5E-05 50.9 9.8 128 655-784 150-304 (523)
253 3mkq_B Coatomer subunit alpha; 92.3 2.2 7.6E-05 38.2 12.5 43 354-401 17-59 (177)
254 4b4t_P 26S proteasome regulato 92.1 14 0.00048 39.3 22.1 101 304-404 136-246 (445)
255 3mkq_B Coatomer subunit alpha; 91.9 6 0.0002 35.4 14.8 46 138-188 15-60 (177)
256 3lpz_A GET4 (YOR164C homolog); 91.3 13 0.00045 37.2 23.5 218 42-281 37-295 (336)
257 2ff4_A Probable regulatory pro 91.2 5 0.00017 42.0 16.2 127 310-452 120-249 (388)
258 2ff4_A Probable regulatory pro 91.0 2.2 7.6E-05 44.7 13.3 110 134-260 121-231 (388)
259 4fhn_B Nucleoporin NUP120; pro 89.9 20 0.0007 43.7 22.3 63 269-331 900-964 (1139)
260 4fhn_B Nucleoporin NUP120; pro 88.7 10 0.00035 46.4 18.4 119 133-258 817-962 (1139)
261 2wpv_A GET4, UPF0363 protein Y 87.9 23 0.00078 35.2 18.6 27 41-67 34-60 (312)
262 1ya0_A SMG-7 transcript varian 87.1 2.9 0.0001 45.0 10.8 75 165-240 155-229 (497)
263 4b4t_S RPN3, 26S proteasome re 87.1 2.9 9.8E-05 44.7 10.4 65 269-333 232-298 (523)
264 1ya0_A SMG-7 transcript varian 86.2 2.9 9.8E-05 45.1 10.1 76 345-420 155-230 (497)
265 3lvg_A Clathrin heavy chain 1; 82.4 0.00019 6.5E-09 74.1 -22.6 74 655-735 243-325 (624)
266 3lvg_A Clathrin heavy chain 1; 79.3 0.00028 9.4E-09 72.9 -22.7 227 521-797 50-276 (624)
267 1wy6_A Hypothetical protein ST 76.7 16 0.00054 30.7 8.6 62 717-780 93-155 (172)
268 3rk3_E Complexin-1; snare prot 71.1 16 0.00055 24.7 6.0 13 888-900 19-31 (63)
269 3lpz_A GET4 (YOR164C homolog); 69.2 97 0.0033 31.0 29.0 27 522-548 133-159 (336)
270 1wy6_A Hypothetical protein ST 66.1 60 0.002 27.4 13.1 142 43-191 10-154 (172)
271 2wpv_A GET4, UPF0363 protein Y 64.2 1.2E+02 0.004 30.1 20.7 128 314-472 22-158 (312)
272 3re2_A Predicted protein; meni 51.4 1.1E+02 0.0038 30.4 10.5 84 679-779 239-325 (472)
273 4gq2_M Nucleoporin NUP120; bet 51.3 31 0.001 41.0 8.4 52 348-403 816-867 (950)
274 3bu8_A Telomeric repeat-bindin 50.1 1.5E+02 0.0052 27.1 11.5 127 41-173 17-159 (235)
275 4gq2_M Nucleoporin NUP120; bet 49.2 61 0.0021 38.5 10.5 37 666-702 831-867 (950)
276 3u84_A Menin; MLL, JUND, ledgf 48.1 1.3E+02 0.0043 30.7 10.5 84 679-779 261-347 (550)
277 3r9m_A BRO1 domain-containing 48.1 79 0.0027 32.5 9.9 49 784-832 114-162 (376)
278 2ijq_A Hypothetical protein; s 47.5 81 0.0028 27.5 8.3 61 131-191 35-104 (161)
279 3t5v_B Nuclear mRNA export pro 47.2 23 0.00077 37.5 5.7 92 655-746 140-253 (455)
280 2p58_C Putative type III secre 46.5 1.1E+02 0.0036 24.2 11.3 76 141-223 20-95 (116)
281 1kil_E Complexin I snare-compl 46.2 28 0.00097 22.4 3.6 16 888-903 16-31 (49)
282 3ax2_A Mitochondrial import re 45.9 24 0.00082 26.0 3.9 31 718-748 21-51 (73)
283 2w2u_A Hypothetical P60 katani 45.3 30 0.001 26.3 4.6 18 726-743 31-48 (83)
284 2qx5_A Nucleoporin NIC96; mRNA 44.8 1E+02 0.0035 34.4 10.7 100 148-260 281-382 (661)
285 3t5x_A PCI domain-containing p 44.7 19 0.00065 33.3 4.2 54 714-767 14-70 (203)
286 2v6y_A AAA family ATPase, P60 43.8 32 0.0011 26.1 4.6 18 726-743 23-40 (83)
287 2uwj_G Type III export protein 42.8 1.2E+02 0.0041 23.8 10.8 76 141-223 19-94 (115)
288 2w2u_A Hypothetical P60 katani 42.5 31 0.0011 26.2 4.3 13 140-152 31-43 (83)
289 3esl_A Checkpoint serine/threo 41.5 1E+02 0.0035 28.1 8.2 53 689-744 93-145 (202)
290 2br9_A 14-3-3E, 14-3-3 protein 41.4 2.3E+02 0.0078 26.6 14.1 45 164-208 7-51 (234)
291 1o9d_A 14-3-3-like protein C; 41.3 2.4E+02 0.0083 26.9 14.4 182 165-370 11-206 (260)
292 3ax2_A Mitochondrial import re 40.5 74 0.0025 23.4 5.8 30 132-161 21-50 (73)
293 2v6y_A AAA family ATPase, P60 40.2 35 0.0012 25.9 4.3 16 174-189 23-38 (83)
294 3re2_A Predicted protein; meni 39.7 1.5E+02 0.0052 29.5 9.5 124 41-190 196-324 (472)
295 2npm_A 14-3-3 domain containin 39.3 2.6E+02 0.0089 26.7 16.4 24 755-778 202-226 (260)
296 3u84_A Menin; MLL, JUND, ledgf 37.6 1.6E+02 0.0056 29.9 9.5 123 42-190 219-346 (550)
297 3esl_A Checkpoint serine/threo 37.0 2.4E+02 0.0083 25.6 14.3 85 696-781 58-146 (202)
298 3rau_A Tyrosine-protein phosph 36.7 1.5E+02 0.005 30.3 9.7 47 784-833 117-163 (363)
299 3vkg_A Dynein heavy chain, cyt 35.5 6.2E+02 0.021 34.5 17.1 20 812-831 1922-1941(3245)
300 2wvi_A Mitotic checkpoint seri 34.3 2.4E+02 0.0081 24.7 9.9 51 731-781 77-127 (164)
301 1f5n_A Interferon-induced guan 33.7 5.1E+02 0.017 28.4 21.8 30 712-742 311-340 (592)
302 2ijq_A Hypothetical protein; s 32.2 1.8E+02 0.0061 25.4 8.0 63 717-779 35-104 (161)
303 3mv2_A Coatomer subunit alpha; 31.9 1.6E+02 0.0055 29.1 8.5 27 43-69 117-143 (325)
304 3t5v_B Nuclear mRNA export pro 31.3 1.5E+02 0.0051 31.3 8.9 29 678-706 223-252 (455)
305 3c3r_A Programmed cell death 6 31.1 1.9E+02 0.0063 29.8 9.5 46 784-832 142-187 (380)
306 1wfd_A Hypothetical protein 15 30.5 67 0.0023 25.0 4.6 18 726-743 27-44 (93)
307 2rpa_A Katanin P60 ATPase-cont 29.9 48 0.0016 24.8 3.4 28 716-743 14-41 (78)
308 4aez_C MAD3, mitotic spindle c 29.4 2.5E+02 0.0085 26.1 8.8 84 661-747 97-183 (223)
309 1om2_A Protein (mitochondrial 29.2 54 0.0019 25.5 3.7 30 718-747 24-53 (95)
310 2crb_A Nuclear receptor bindin 28.8 85 0.0029 24.1 4.5 28 715-742 16-43 (97)
311 2cwy_A Hypothetical protein TT 28.5 1.7E+02 0.0058 22.7 6.6 58 132-191 5-68 (94)
312 2rpa_A Katanin P60 ATPase-cont 27.9 49 0.0017 24.7 3.2 25 132-156 16-40 (78)
313 3t5x_A PCI domain-containing p 27.3 1.1E+02 0.0037 28.1 6.3 32 130-161 16-47 (203)
314 2cpt_A SKD1 protein, vacuolar 27.2 75 0.0026 26.0 4.5 18 726-743 30-47 (117)
315 3bu8_A Telomeric repeat-bindin 27.1 1.7E+02 0.0058 26.8 7.0 22 722-743 122-143 (235)
316 2v6x_A Vacuolar protein sortin 27.1 84 0.0029 23.9 4.6 18 726-743 25-42 (85)
317 1wfd_A Hypothetical protein 15 26.6 77 0.0026 24.7 4.3 15 174-188 27-41 (93)
318 2j1d_G DAAM1, disheveled-assoc 26.6 2.5E+02 0.0085 30.0 9.8 16 816-831 348-363 (483)
319 2crb_A Nuclear receptor bindin 26.4 83 0.0028 24.2 4.1 25 131-155 18-42 (97)
320 4gq4_A Menin; tumor suppressor 26.4 3.1E+02 0.011 28.1 9.3 86 81-189 240-330 (489)
321 4b4t_O 26S proteasome regulato 25.5 5.6E+02 0.019 26.2 12.8 93 384-476 84-197 (393)
322 1v9d_A Diaphanous protein homo 25.0 4.9E+02 0.017 26.0 11.3 13 819-831 268-280 (340)
323 3mkr_B Coatomer subunit alpha; 25.0 3.9E+02 0.013 26.4 9.8 27 43-69 105-131 (320)
324 3uzd_A 14-3-3 protein gamma; s 24.8 4.5E+02 0.015 24.8 17.7 63 129-191 5-69 (248)
325 2br9_A 14-3-3E, 14-3-3 protein 23.9 4.5E+02 0.015 24.6 16.5 59 129-187 6-66 (234)
326 2qx5_A Nucleoporin NIC96; mRNA 23.3 8E+02 0.027 27.3 17.3 76 347-435 299-382 (661)
327 4a1g_A Mitotic checkpoint seri 23.1 3.6E+02 0.012 23.2 10.1 84 695-780 48-131 (152)
328 1f5n_A Interferon-induced guan 23.0 1.8E+02 0.0063 31.9 8.0 32 672-704 310-341 (592)
329 1om2_A Protein (mitochondrial 22.8 1.1E+02 0.0038 23.8 4.4 27 348-374 26-52 (95)
330 2cpt_A SKD1 protein, vacuolar 22.4 93 0.0032 25.5 4.2 16 174-189 30-45 (117)
331 2cwy_A Hypothetical protein TT 22.2 1.3E+02 0.0043 23.5 4.8 58 719-778 6-67 (94)
332 2wvi_A Mitotic checkpoint seri 21.1 4.2E+02 0.014 23.2 9.9 50 692-744 77-126 (164)
333 2vkj_A TM1634; membrane protei 21.0 2.8E+02 0.0094 21.1 5.9 25 166-190 57-81 (106)
334 2vkj_A TM1634; membrane protei 20.6 1.8E+02 0.006 22.1 4.8 29 715-743 54-82 (106)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-40 Score=382.31 Aligned_cols=505 Identities=12% Similarity=0.024 Sum_probs=402.7
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
...+..++..+...|++++|+..|++++...|+ ...+..++.++...|+ +++|+..|++++.. |.++.++..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 445566666666667777777777666666663 3455666666666666 66666666665433 445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
+|...|++++|..++++.. |.... +...... .......+....+++.+|.+|...|
T Consensus 159 ~~~~~g~~~~A~~~~~~~~------~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETN------PFRKD-----EKNANKL-------------LMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHhccC------Ccccc-----ccccccc-------------cccccccchhHHHHHHHHHHHHHcC
Confidence 6666666665555555321 11100 0000000 0000112345778999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCcCc-HHHHHHHHHHH-hcCCHhHHHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
++++|+..|+++++.+|++..++..++.++...+....+... +......++.. ...+..++..+ ..|++++|+..
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 999999999999999999999999999887766544433222 33333222222 22344456677 88999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhh
Q 002286 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (942)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (942)
|+++... + .+..+++.++.++...|++++|+..|++++.
T Consensus 295 ~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------- 333 (597)
T 2xpi_A 295 LSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILE----------------------------------- 333 (597)
T ss_dssp HHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------------------
Confidence 9988765 2 3689999999999999999999999999997
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
..|.+..++..++.++...|++++|...+++++...|+++.++..+|.++...|++++|+.+|++++..+|.
T Consensus 334 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 334 --------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp --------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 446678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 002286 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (942)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (942)
++.++..++.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSSYALF 471 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998876 67788889999 9988 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
|.++.+++.+|.++...|++++|+.+|+++++..|..+ .|.. +.+|.++|.++...|++++|+..|++++.. .+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 549 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STND 549 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC
Confidence 99999999999999999999999999999999865321 1232 789999999999999999999999999998 5667
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
+.++..+|.+|...|++++|..+|+++++++|+++.++.+++.+|.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998753
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-39 Score=355.39 Aligned_cols=383 Identities=20% Similarity=0.254 Sum_probs=353.8
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCC
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 424 (942)
+.+|..++..|++++|+..+.+++..+|+++.++..+|.++...|++++|...++.+++.+|.++.++..+|.++ ..|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 457888889999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
+++|+..|++++...|. ....+..+|.++...|++++|+..|++++.
T Consensus 83 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Confidence 99999999998887554 577889999999999999999999999988
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
..|....++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++
T Consensus 130 ---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 130 ---------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ---------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHH
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (942)
++..+|+++.++..+|.++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+..|
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~ 260 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTY 260 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHHH
Confidence 99999999999999999999999999999999999998887 67788889999 8888 9999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 665 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
++++..+|+++.++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|+++++.
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999999987 78999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 745 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
.+.++.++..+|.++...|++++|+..|+++++..|+++.+++++|.++..+
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 4567889999999999999999999999999999999999999999987654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.8e-39 Score=349.59 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=288.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
.+|..++..|++++|+..|.++++.+|+++.++..++.++...|++++|...++.++..+|.+ +.++..+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~ 292 (942)
+++|+..|++++..+|++..++..+|.++...|+ +++|+..|++++..+|++..++..++.++...|++++|...+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888888 8888888888888888887777777777777777777777777
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC
Q 002286 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (942)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (942)
+++... |..+.++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|++++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 766543 55556777777777777777777777777776 456667777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHH
Q 002286 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (942)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (942)
|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++...|. ++.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777887788777777777777777777777777 777777777777777665433 45666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
..+|.++...|++++|+..|++++. ..|....+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666665 445556666666
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 573 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666666665554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-40 Score=381.81 Aligned_cols=486 Identities=14% Similarity=0.053 Sum_probs=320.9
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++..|..++..+...|++++|+..|++++...|+ ...++.+|.++...|++++|+..|++++.. |.+ +.++..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS-SACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccc-hhHHHHHHH
Confidence 45677889999999999999999999999999884 477889999999999999999999998765 445 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPEN-------------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+|...|++++|+..|++ ..|.. ..+|..+|.++...|+ +++|+..|++++..+|.
T Consensus 159 ~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCch
Confidence 99999999999999986 34544 7789999999999998 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQL---TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 343 (942)
++.++..++.++...+....+... +...... ........+..++..|...|++++|+..|.+++.. +....
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 306 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE--DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSD 306 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG--GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccc--hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHH
Confidence 988888887766544333221110 1111100 00111122333345555555666666666555531 34445
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 423 (942)
++..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..+++++...|+++.++..++.++
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--- 383 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY--- 383 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH---
Confidence 55556666666666666666666666555555555555666666666666666666655555555555555555555
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
...|++++|+..|++++.
T Consensus 384 -----------------------------------~~~g~~~~A~~~~~~~~~--------------------------- 401 (597)
T 2xpi_A 384 -----------------------------------LCVNKISEARRYFSKSST--------------------------- 401 (597)
T ss_dssp -----------------------------------HHTTCHHHHHHHHHHHHH---------------------------
T ss_pred -----------------------------------HHhccHHHHHHHHHHHHH---------------------------
Confidence 444444444444444444
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..|.+..++..++.++...|++++|+..|++++...|++..++..++.++...|++++|+.+|+
T Consensus 402 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 402 ----------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233444555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc------CCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHH
Q 002286 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA------TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657 (942)
Q Consensus 584 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~ 657 (942)
+++...|.++.++..+|.++...|++++|+..|++++.. .|.....++..+|.+ |... |++
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~ 532 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA-YRKL------------KMY 532 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH-HHHT------------TCH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH-HHHh------------cCH
Confidence 555555555555555555555555555555555555554 222114566677777 7777 777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 658 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 658 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
++|+..|++++..+|+++.++..+|.+|...|++++|+..|+++++..| +++.++..++.+|.
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHh
Confidence 7777777777777777777788888888888888888888888887776 67777777777653
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9e-35 Score=333.76 Aligned_cols=316 Identities=12% Similarity=0.101 Sum_probs=232.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 422 (942)
.+....+...++..+.+.....+........++.++. ..|++++|+..|+++++.+|+++..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~---- 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL---- 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH----
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH----
Confidence 3444455555554444444444444444444443332 3357888888888888888888766554433
Q ss_pred CCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
++..+|.++...|++++|+..|++++.
T Consensus 245 ---------------------------~~~~~g~~~~~~~~~~~A~~~~~~~~~-------------------------- 271 (537)
T 3fp2_A 245 ---------------------------ALCYTGIFHFLKNNLLDAQVLLQESIN-------------------------- 271 (537)
T ss_dssp ---------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred ---------------------------HHHHHHHHHHhcccHHHHHHHHHHHHh--------------------------
Confidence 345567788888888888888888887
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..|. ..++..+|.++...|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+
T Consensus 272 -----------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 272 -----------------LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp -----------------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3454 6778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (942)
++++..+|.++.++..+|. + |... |++++|+.
T Consensus 334 ~~a~~~~~~~~~~~~~la~-----------------------------------~-~~~~------------g~~~~A~~ 365 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLAC-----------------------------------L-LYKQ------------GKFTESEA 365 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHH-----------------------------------H-HHHT------------TCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHH-----------------------------------H-HHHc------------CCHHHHHH
Confidence 8888777776655554444 4 5555 66666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHHh----------cCHH
Q 002286 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQ----------GNFA 731 (942)
Q Consensus 663 ~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~~~~la~~~~~~----------g~~~ 731 (942)
.|++++..+|+++.++..+|.++...|++++|+..|+++++..|...... ....++.+|.++... |+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 66777777788888888888999999999999999999998887543221 233467788999999 9999
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+|+..|++++.. .+.++.++..+|.++...|++++|+.+|++++.+.|+++.....+.
T Consensus 446 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 446 AAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 999999999998 5667899999999999999999999999999999999877654433
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=330.67 Aligned_cols=426 Identities=15% Similarity=0.132 Sum_probs=352.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45678888888888888888888888888888 68888888888888888888888888888888888 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH---------------------------
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA--------------------------- 260 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~--------------------------- 260 (942)
..+|++++|+..|++++..+|.+......+..............+++..++.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 88888888888888888888765444333322222221111111222111111
Q ss_pred -------HHh--------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CCCC----CchhHHHHHH
Q 002286 261 -------FEI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (942)
Q Consensus 261 -------~~~--------~p~~~~~~~~la~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~----~~~~~~~~~l 311 (942)
+.. .|.++.++..++..++. .|++++|+..+++++. . .+.. |..+.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 14557888888988887 8999999999999998 4 2222 5667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (942)
|.++...|++++|+..|.+++.. .|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
+++|+..+++++...|.++.++..+|.++ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 468899999999999999999999
Q ss_pred HHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh---cCCHHHHHHH
Q 002286 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (942)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (942)
|++++...+... .......++..+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999998543100 011124589999999999 9999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhh
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 601 (942)
+++++..+|+++.++..+|.++...|++++|..++++++..+|+++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3e-34 Score=329.42 Aligned_cols=452 Identities=16% Similarity=0.129 Sum_probs=351.5
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+....+..+|..+...|+.. +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 45678899999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VAL 237 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l 237 (942)
++.+++.+|.++...|++++|+..|+ ++..+|+.... + ...+...+....|+..+++++...|...... ...
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 99999999999999999999999995 88888876322 2 2244455666889999999888765432210 111
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCCc----hh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT----KS 305 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~----~~ 305 (942)
...+....+ ...++..+.+....++........++..+. ..|++++|...+++++...+..+. ..
T Consensus 167 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 167 LASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 111222233 333333333333333333333333333222 234666677777766655433322 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
.++..+|.++...|++++|+..|.+++.. .|. ..++..+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 56888999999999999999999999984 455 78899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002286 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (942)
Q Consensus 386 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (942)
+...|++++|+..+++++..+|+++.++..+|.++ ..|++++|+..+++++...|. ++.++..+|.++...|++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999 999999999999999987554 578899999999999999
Q ss_pred HHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc------
Q 002286 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI------ 538 (942)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 538 (942)
++|+..|++++...+... ........++.+|.++...
T Consensus 395 ~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp HHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999998543110 1112334467778888888
Q ss_pred ----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 539 ----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 539 ----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|+.+....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=323.15 Aligned_cols=440 Identities=15% Similarity=0.127 Sum_probs=360.4
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
.+..+..+|..+...|++++|+..|.+++.. .| ...++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3577889999999999999999999999984 34 4778999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcC---CHhHHHHHHHHHHH----------------------
Q 002286 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTART---------------------- 437 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~---------------------- 437 (942)
.++...|++++|+..|++++...|.+......+.... ... ...+++..++.+..
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999998886543332222211 111 11111111111100
Q ss_pred ------HHHHcC---------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhh
Q 002286 438 ------LLKKAG---------EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (942)
Q Consensus 438 ------~~~~~~---------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (942)
...... .+.+...+...|.+++. .|++++|+..|++++...... ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~------------- 225 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ--LDK------------- 225 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH--TTT-------------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh--hcc-------------
Confidence 000000 01226778888888886 899999999999998721000 000
Q ss_pred HhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH
Q 002286 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 579 (942)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 579 (942)
........|....+++.+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|+
T Consensus 226 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 226 --------------NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp --------------STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGG
T ss_pred --------------CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHH
Confidence 00000012557889999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
..+++++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~ 356 (514)
T 2gw1_A 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDD 356 (514)
T ss_dssp GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHH
T ss_pred HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------CCHHH
Confidence 9999999999999999999999999999999999999999998887 66788889988 8888 99999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHH---hcCHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFA---QGNFALAMK 735 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~---~g~~~~A~~ 735 (942)
|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|..... ....+++++|.++.. .|++++|+.
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999998843110 114499999999999 999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 736 ~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.|++++.. .+.++.++..+|.++...|++++|...|++++.++|+++.++..+.+.
T Consensus 437 ~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 437 LLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999998 566789999999999999999999999999999999999988877664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1e-31 Score=300.57 Aligned_cols=379 Identities=19% Similarity=0.166 Sum_probs=274.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+...+.+++..+|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+|++ ..++..+|.++...|++++|+..|+++++.+|++. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------
Confidence 5555 44455555555555555555555555555555544 333333332111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
..++.+|.++...|++++|+..|.+++. ..|....++..+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 3345667788888999999999999987 457778889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A 428 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999988776654432
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhh
Q 002286 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (942)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (942)
.......+|.++...|++++|+..|++++..
T Consensus 256 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------------- 286 (450)
T 2y4t_A 256 ------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT------------------------------- 286 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------------------
Confidence 1233455688899999999999999999883
Q ss_pred hhhccCCCCCCCCCcc----hhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 509 HRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 509 ~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
.|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++
T Consensus 287 ------------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 287 ------------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp ------------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3333 447888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhHHHHhh------------hhhcccc-----chHHHHHHHHH-hhccCCC
Q 002286 585 ALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~ 625 (942)
+++.+|+++.++..++ .+|...| +..++...|++ ++...|+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999888 4455555 45666777776 6666554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2e-31 Score=298.29 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=261.5
Q ss_pred HHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 88 ~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
.-+..+..+|... .+.|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..
T Consensus 24 ~~~~~~~~~~~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKL----LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455666666655 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCch---hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+|.++...|++++|+..|++++..+|.+ . .++..++.++.. ..+..+|.++...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHc
Confidence 9999999999999999999999999987 5 556666555322 2345667778888
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (942)
|+ +++|+..|++++...|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|
T Consensus 157 ~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 157 GD---YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp TC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88 9999999999999999999999999999999999999998888888754 55567888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchhhhhcH------------HHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHH
Q 002286 325 GLYYMASVKEINKPHEFIFPYYGL------------GQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQ 388 (942)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~ 388 (942)
+..|.+++.. .|.....+..+ |.++...|++++|+..|++++...|+++. ++..+|.++..
T Consensus 231 ~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 8888888863 45555554444 77777777777777777777777777633 56677777777
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (942)
.|++++|+..+++++..+|+++.++..+|.++ ..|++++|+..|++++++.|. ++.++..++.+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 373 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-----DQQIREGLEKAQ 373 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 77777777777777777777777777777777 777777777777776665433 355555555443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.2e-30 Score=275.68 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=261.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666555555 44555555555
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
...|++++|+..|+++++.+| ++..++..++.+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 555555555555555555555 44444443333211
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHH
Q 002286 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (942)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (942)
...+..+|.++...|++++|+..+.+++. ..|....++..+|.++...|++++|+..
T Consensus 120 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 --------------------MQRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 13345677888889999999999999987 4567778899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
+++++...|+++.++..+|.++...|++++|+..++++++..|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999887665443322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
.......+|.++...|++++|+..|++++... |.+
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------~~~ 267 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTE-------------------------------------------PSV 267 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSS
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------------CCc
Confidence 13445566889999999999999999998842 333
Q ss_pred h----hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 525 V----TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 525 ~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
+ .++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3 456778999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhcccc
Q 002286 601 DLELKND 607 (942)
Q Consensus 601 ~~~~~~g 607 (942)
.++...+
T Consensus 348 ~~~~~~~ 354 (359)
T 3ieg_A 348 KAQRLLK 354 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8865543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=2.3e-29 Score=272.24 Aligned_cols=323 Identities=17% Similarity=0.157 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
+..+..+|..+...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 457788999999888877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCchhhHhhH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.++..+|.++...|++++|+..|++++..+| ++ ..++..+ |.++...|++++|+..|+++++.+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5556555 799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 002286 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (942)
Q Consensus 228 p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (942)
|.++.++..+|.++...|+ +++|+..+++++..+|.++.++..+|.++...|++++|...+++++...+..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999876444332111
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q 002286 308 ---------YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (942)
Q Consensus 308 ---------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (942)
...+|.++...|++++|+..|.+++...+.++.. ..++..+|.++...|++++|+..++++++.+|+++.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 2344888999999999999999999854322111 134667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
++..+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999998888887766
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.9e-30 Score=292.15 Aligned_cols=275 Identities=17% Similarity=0.154 Sum_probs=193.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-- 195 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-- 195 (942)
....+..+|.++..+|++++|+..|+++++. +|....++..+|.+|...|++++|+..|++++.+.|..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456778999999999999999999999875 67778899999999999999999999999999874321
Q ss_pred -----chhhHhhHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 196 -----PGAIRLGIGLCRYKL--GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 196 -----~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++...++.+..++|+..++++++++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 256677788777765 4799999999999999999999999999887776554447889999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.++..++..+...+ ...|++++|..++++++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665543322 233455566666666665 345556666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCcCc
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-------------------GQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~p~~ 409 (942)
|.++...|++++|+..++++++.+|+++.++..+|.+|... +.++.|+..+++++..+|.+
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 66666666666666666666666666666666666665433 22344444444444444444
Q ss_pred HHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 410 AQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 410 ~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
..++..+|.++ ..|++++|+..|++++.
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 44444444444 44444444444444443
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=284.96 Aligned_cols=363 Identities=15% Similarity=0.079 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-------
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------- 372 (942)
..+..+|.++...|++++|+.+|+++++.. ...+....++.++|.+|..+|++++|+.++++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 444455555555555555555555554321 1123344445555555555555555555555555431
Q ss_pred -CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH----hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 373 -PDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 373 -p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
+..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++ ..++.++|+..+++++.+.|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~---- 207 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD---- 207 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----
Confidence 223444555554444332 455555555555555555555555555442 234445555555555544322
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCC
Q 002286 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (942)
++.++..+|..+.. .|++++|..+|++++. ..
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-------------------------------------------~~ 243 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-------------------------------------------KA 243 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHH-------------------------------------------HC
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------------------------------------------hC
Confidence 34444444443332 2445555555555555 34
Q ss_pred CcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------------cCChhHHHHHH
Q 002286 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-------------------RNNLQLSIELV 582 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~ 582 (942)
|....++.++|.++...|++++|+..|.++++.+|+++.++..+|.++.. .+.++.|+..+
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45555566666666666666666666666666666666666666555433 23356677777
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCch--hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A 660 (942)
++++..+|.++.++..+|.++...|++++|+..|++++...+.+.. ..+..+|.+.+... |++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A 391 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------------KCEDKA 391 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS------------SCHHHH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC------------CCHHHH
Confidence 7777777777777777777777777777777777777776654222 12334444312222 667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
+..|+++++++|++......+ ..+..++.+++..+| .++.+|.++|.+|...|++++|+++|+++
T Consensus 392 i~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p-----~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNG-----ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC------CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777665433222 233445566666665 55666777777777777777777777777
Q ss_pred Hhh
Q 002286 741 LRK 743 (942)
Q Consensus 741 l~~ 743 (942)
++.
T Consensus 457 Le~ 459 (472)
T 4g1t_A 457 LES 459 (472)
T ss_dssp ---
T ss_pred Hhc
Confidence 665
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.9e-28 Score=257.13 Aligned_cols=302 Identities=17% Similarity=0.224 Sum_probs=276.7
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
...+...|.++..++.+|..++..|++++|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345566788999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hhHhhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 198 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
.+++.+|.++...| ++++|+..|++++..+|.++.++..+|.++...|+ +++|+..+++++...|.+..++..+|.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhhhcHHH
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~la~ 350 (942)
++...|++++|...+++++... |..+.++..+|.++...|++++|+.++.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999865 666799999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHh
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTG 426 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~ 426 (942)
++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.++ ..|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=5.5e-26 Score=255.83 Aligned_cols=393 Identities=15% Similarity=0.138 Sum_probs=292.2
Q ss_pred chhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 002286 303 TKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPD 374 (942)
Q Consensus 303 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~ 374 (942)
.++.+++.+|.+|.. .+++++|+.+|+++.+ ...+.+++.+|.+|.. .+++++|+.+|+++.+. .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 344666677777766 6777777777777765 2455677777777777 77777777777777663 4
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h----cCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 375 NCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 375 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
++.+++.+|.+|.. .+++++|+.+|+++... +++.++..+|.+| . .+++++|+.+|+++.+.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 67777777777777 67777777777777654 4677777777777 4 56777777777777653
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCC
Q 002286 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (942)
.++..+..+|.++.. .+++++|+.+|+++...
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------------- 216 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------------------------------------------- 216 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------------------------------------------
Confidence 146777778888777 77888888888887762
Q ss_pred CcchhHHHHHHHHHhh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhcCCCh
Q 002286 522 WNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYP 593 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~ 593 (942)
.++.+.+.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++.+. .++
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 255677788888775 67888888888887764 456778888888887 78888888888888654 567
Q ss_pred hHHHHhhhhhccc-----cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 594 NALSMLGDLELKN-----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 594 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
.++..+|.+|... +++++|+..|+++.+.. +..+++.+|.+ |..... .+++++|+.+|++++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~~g~---------~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI-YFRLGS---------EEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHSCC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH-HHhCCC---------cccHHHHHHHHHHHH
Confidence 7888888888776 78888888888887764 45677778887 766400 058899999999998
Q ss_pred hcCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHH
Q 002286 669 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 740 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 740 (942)
+. +++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 86 678899999999988 789999999999998853 57899999999998 89999999999999
Q ss_pred HhhhCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 741 LRKFYY-NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 741 l~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+...++ +.++.+...+|.++.. +...|.+...+.++..|++.
T Consensus 430 ~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHH
T ss_pred HHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 998644 2357788888887654 34455555555555556443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=1.5e-25 Score=252.18 Aligned_cols=397 Identities=16% Similarity=0.122 Sum_probs=284.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~ 184 (942)
++..+.++.. +.++.+++.+|.+|.. .+++++|+..|+++... .++.+++.+|.++.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555665544 6788999999999998 89999999999999876 578999999999998 8999999999
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hccHHhHHHHHHH
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~A~~~ 256 (942)
|+++...+ + +..++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.++.. .++ +++|+..
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999998 88999999999998765 578899999999887 556 8899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh----cCCHHHHHHHH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (942)
|+++.+. .++.++..+|.+|.. .+++++|..+++++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9988775 467778888887777 77777777777777653 234677777777775 67777777777
Q ss_pred HHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002286 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (942)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~ 399 (942)
+++.. .....+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77764 2445667777777776 67777777777777653 4566777777777776 6777777777
Q ss_pred HHHHHhCcCcHHHHHHHHHHH-hcC---CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 002286 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (942)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 471 (942)
+++.+. .++.++..+|.++ ..| ++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777665 3456667777776 434 566677777666653 145666677777666 66777777777
Q ss_pred HHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHHHH
Q 002286 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVL 547 (942)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 547 (942)
+++... .++.+++++|.+|.. .+++++|..+
T Consensus 391 ~~A~~~---------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 391 RKAAEQ---------------------------------------------GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHT---------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHhC---------------------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 766652 145566666666666 6666666666
Q ss_pred HHHHHHhCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 548 YRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 548 ~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
|++++...|+ ++.+...++.++.. +...|.....+.++..|+
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence 6666666633 55555555555432 233344444444444443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.9e-27 Score=256.65 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=198.6
Q ss_pred HHHHHHH-HHHHHhhcCCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 109 HFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 109 ~~~~A~~-~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+|++|+. .|++++...|.++ ..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4458998 9999998888764 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------------HHHHHhhccH
Q 002286 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANEA 247 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------------~~~~~~~~~~ 247 (942)
.|++++..+|++ ..++..+|.++...|++++|+..|++++..+|.+...+..+ +.++ ..|+
T Consensus 120 ~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 196 (368)
T 1fch_A 120 ALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL- 196 (368)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH-
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc-
Confidence 999999999998 77899999999999999999999999999999887665432 2222 2332
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
+++|+..+++++..+|.. + .+.++..+|.++...|++++|+..
T Consensus 197 --~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 197 --FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp --HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444333330 0 234445555555555555555555
Q ss_pred HHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 002286 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (942)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 407 (942)
|.+++. ..|....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.+.|
T Consensus 240 ~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 240 FTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555554 23444555666666666666666666666666666666666666666666666666666666666666655
Q ss_pred Cc-----------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002286 408 RD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 408 ~~-----------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (942)
++ ..+|..++.++ ..|++++|..++.+++..++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 55 55666666666 66666666666555555443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-26 Score=246.60 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..++..+...|+.. +|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 346677888888888766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 163 ~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
.++..+|.++...| ++++|+..|++++..+|.. ..++..+|.++...|++++|+..|+++++..|++..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 777999999999999999999999999999999999999999999
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchhHHHHHHHHHH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~la~~~ 315 (942)
...|+ +++|+..+++++..+|.++.++..+|.++...|++++|...+++++...+. .|..+.++..+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999975321 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (942)
...|++++|+.+|+++++ ..|....++..+|.++...|++++|+.+|+++++.+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45677889999999999999999999999999999999999999999998 5666654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.5e-25 Score=255.03 Aligned_cols=430 Identities=12% Similarity=0.041 Sum_probs=329.2
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 196 (942)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.++.+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 677889999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred hhhHhhHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHh---------hccHHhHHHHHHHHHH
Q 002286 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (942)
Q Consensus 197 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~---------~~~~~~~~~A~~~~~~ 259 (942)
..+|+.++. .....|+++.|+. .|++++.. +|.+...|...+.+... .|+ ++.|...|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777774 4456788887765 88888764 56778888888887665 455 9999999999
Q ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH------H
Q 002286 260 AFEIYPYCAM--ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA------S 331 (942)
Q Consensus 260 ~~~~~p~~~~--~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------a 331 (942)
++. .|.... .+...+......|. ..+..+ +....+++..|...|.. .
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-----------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-HLAKKM-----------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-HHHHHH-----------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-hHHHHH-----------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 575532 22222221111110 000000 01123445555555544 2
Q ss_pred HHhc-C-CCCCc-------hhhhhcHHHHHHHc----CCh----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------
Q 002286 332 VKEI-N-KPHEF-------IFPYYGLGQVQLKL----GDF----RSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (942)
Q Consensus 332 ~~~~-~-~~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (942)
++.. . .+|.. ...|.......... ++. ..++..|++++..+|.++.+|..+|..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 2210 0 12221 23333333222221 232 478899999999999999999999999886
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 002286 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVI 457 (942)
Q Consensus 389 -~g~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~l~~~ 457 (942)
.|+++ +|+..|+++++ ..|++..+|..++.++ ..|++++|...|++++...|. ++ .+|..++.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~ 365 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKF 365 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHH
Confidence 68876 89999999997 7899999999999999 899999999999999885332 33 588899999
Q ss_pred HHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH-Hh
Q 002286 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LE 536 (942)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~ 536 (942)
+.+.|++++|...|.+++. .+|.....+...+.+ +.
T Consensus 366 ~~~~~~~~~A~~~~~~Al~-------------------------------------------~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKARE-------------------------------------------DARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------------------------------------------CTTCCTHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh-------------------------------------------ccCCchHHHHHHHHHHHH
Confidence 9999999999999999988 334445555555554 34
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh----HHHHhhhhhccccchHHH
Q 002286 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A 612 (942)
..|++++|..+|+++++.+|+++.++..++.++...|+.++|..+|++++...|.++. +|..++.+....|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6899999999999999999999999999999999999999999999999998877765 788888888889999999
Q ss_pred HHHHHHhhccCCC
Q 002286 613 KETFRAASDATDG 625 (942)
Q Consensus 613 ~~~~~~~~~~~~~ 625 (942)
..++.++++..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999987763
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=1.9e-25 Score=254.22 Aligned_cols=395 Identities=11% Similarity=0.054 Sum_probs=305.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 151 ~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.+ ..+|..+|..+...|++++|+..|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~-~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS-GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 678899999999999999984 78899999999999999999999 78899999999999999999999999999999 6
Q ss_pred HHHHHHHHHHH-HhhccHHhHHHH----HHHHHHHHHh---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 002286 231 VEALVALAVMD-LQANEAAGIRKG----MEKMQRAFEI---YPYCAMALNYLANHFFF---------TGQHFLVEQLTET 293 (942)
Q Consensus 231 ~~~~~~l~~~~-~~~~~~~~~~~A----~~~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~a~~~~~~ 293 (942)
...|..++... ...|+ +..| ...|++++.. +|.+..+|...+..... .|+++.|..+|++
T Consensus 79 ~~lw~~~~~~~~~~~~~---~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGK---LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTT---STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 88888888544 34455 4444 3477777764 56677888888777655 6888889999999
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHH------
Q 002286 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK------ 367 (942)
Q Consensus 294 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 367 (942)
++..+ .. .....|...+......|. ..+ ...+ ....+++..|...+..
T Consensus 156 al~~P-~~-~~~~~~~~~~~~e~~~~~-~~~----~~~l-------------------~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 156 GCVNP-MI-NIEQLWRDYNKYEEGINI-HLA----KKMI-------------------EDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HTTSC-CT-THHHHHHHHHHHHHHHCH-HHH----HHHH-------------------HTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhch-hh-hHHHHHHHHHHHHHhhch-hHH----HHHH-------------------HHhhHHHHHHHHHHHHHHHHHH
Confidence 88732 11 111222222221111111 000 0111 1123556677666655
Q ss_pred HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCcCcHHHHHHHHHHH-h-----
Q 002286 368 VLEI-----YPDN-------CETLKALGHIYVQL----GQI----EKAQELLRKAAKIDPRDAQAFIDLGELL-I----- 421 (942)
Q Consensus 368 ~l~~-----~p~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~-~----- 421 (942)
.++. .|.. ...|.......... ++. ..++..|++++..+|.++.+|..++.++ .
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhh
Confidence 3332 3332 24454444333221 232 4788999999999999999999999998 5
Q ss_pred --cCCHh-------HHHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccch
Q 002286 422 --SSDTG-------AALDAFKTART-LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (942)
Q Consensus 422 --~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (942)
.|+++ +|+..|++++. ..|. +..++..++.++...|++++|...|++++.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--------------- 349 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKK-----NMLLYFAYADYEESRMKYEKVHSIYNRLLA--------------- 349 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---------------
Confidence 69987 89999999986 4333 689999999999999999999999999998
Q ss_pred hhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch-hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H
Q 002286 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI-A 569 (942)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~ 569 (942)
.+|.++ .++..++.++...|++++|..+|.++++..|.....+...+.+ +
T Consensus 350 ----------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 350 ----------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp ----------------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred ----------------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 455554 5899999999999999999999999999999887777777666 3
Q ss_pred HHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 570 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
...|++++|..+|+++++.+|+++.+|..++.++...|+.+.|...|++++...|.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999987653
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.8e-26 Score=250.42 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=245.3
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
++...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6667788888888 8888877777663 457788888888888888888888888888887 667788888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~ 291 (942)
++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..+++++...|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 88888888888888888888888888888888888 888888888888888877655433322100
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
.......+..++.++ ..|++++|+..|.+++.. .|. ...++..+|.++...|++++|+..|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112233556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC----
Q 002286 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (942)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (942)
..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++...|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 445 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+....++..+|.++...|++++|...+.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987776
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.8e-25 Score=241.91 Aligned_cols=277 Identities=14% Similarity=0.095 Sum_probs=189.9
Q ss_pred HHHHHHHhhcCCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
...+.......|.++ ..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555544 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhhccHHhHHHHHHHHHH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
..+|++ ..++..+|.++...|++++|+..|+++++.+|++..++..+ |.++...|+ +++|+..+++
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999998 78899999999999999999999999999999876666554 778888877 8889999988
Q ss_pred HHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 260 ~~~~~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
++..+|. ++.++..+|.++...|++++|+..+++++..
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------------- 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------------------------------------- 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------
Confidence 8888887 6655555555555555555555555554443
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------- 408 (942)
.|....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.+.|+
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 33444445555555555555555555555555555555555555555555555555555555555555444
Q ss_pred ---cHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 409 ---DAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 409 ---~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
+..+|..++.++ ..|+.+.+.....+
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 234455555555 55555555554444
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.5e-25 Score=242.57 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=236.9
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 002286 149 SAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (942)
Q Consensus 149 ~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (942)
..+...+...|.+ ...++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444 3458888999999999999999999999988888 7778889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 002286 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (942)
Q Consensus 225 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 304 (942)
+.+|++..++..+|.++...|+ +++|+..+++++..+|.++.++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999888889999999888888 88899999988888877664443331 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (942)
...+..+|.++...|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245667799999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC-------CCHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998875332 124789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 002286 455 GVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888877554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=8.2e-25 Score=232.88 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=200.7
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+...|++++|+..|++++..+|.+...+..+ +. ++...|+ +++|+..+++++..+|.++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-- 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQ-- 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHH--
Confidence 9999999999999999999999987776665 33 3444555 66777777776666665554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
++..+|.++...|++++|+..+.+++. ..|....++..+|.+
T Consensus 174 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 174 -----------------------------------LHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 444445555555555555555555554 234455556666666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------cHHHHHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~ 419 (942)
+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+ ++.++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666667777777777777777777777666666 56666666666
Q ss_pred H-hcCCHhHHHHHHHHHHHHHHH
Q 002286 420 L-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
+ ..|++++|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 666666666666666665554
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=2e-25 Score=237.83 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=230.4
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchh
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 198 (942)
++..+|.++.++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 88
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
+|+.+|.++..+|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|++++.++|.+..+++.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 99999999999999999997777777666
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC-
Q 002286 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (942)
Q Consensus 279 ~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g- 356 (942)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.+|.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 65 33323221 2233577777776 45777888888888888877
Q ss_pred -ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCcCcHHHHHHHHHHH
Q 002286 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~ 420 (942)
++++|+..+.++ +.+|+++.++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688999999888 888999999999999999874 258999999999 899999999999888877
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=4.5e-25 Score=235.03 Aligned_cols=258 Identities=9% Similarity=-0.018 Sum_probs=240.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhcCCChhHH
Q 002286 518 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
+...|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|+++.+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 346788899999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
..+|.++...|++++|+..|++++...|. +..++..+|.+ +... |++++|+..|++++..+|++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999988 88899999999 9988 9999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCchHH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhCCCC
Q 002286 677 AANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 677 a~~~la~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~ 748 (942)
+++.+|.++.. .|.+++| +..|.+++...| +++.+|+++|.++...| ++++|++.++.+ +. .+.
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~ 307 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHS 307 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCC
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCC
Confidence 99999999999 6666888 599999999998 88999999999999988 699999999887 54 566
Q ss_pred CHHHHHHHHHHHHHcc--------c-HHHHHHHHHHH-HHhCCCChhhHhhHHHHHHHH
Q 002286 749 DAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 749 ~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 797 (942)
++.++..+|.+|...| + +++|+++|+++ ++++|.....|.+++.++..+
T Consensus 308 ~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 308 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7999999999999985 3 58999999999 999999999999998876654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=1.4e-24 Score=231.12 Aligned_cols=273 Identities=13% Similarity=0.084 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..++.+|..+...|++++|+..|++++. ..|....++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~ 58 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEAW 58 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHHH
Confidence 4566778888888888888888888877 445677778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh---------
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML--------- 599 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--------- 599 (942)
..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888877777666
Q ss_pred -----hh-hhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 600 -----GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 600 -----~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+. ++...|++++|+..+++++...|. +..++..+|.+ |... |++++|+..|++++..+|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRPD 204 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCCC
Confidence 55 567777778888888877777666 56667777777 7776 7778888888888877777
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC-----
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----- 748 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 748 (942)
++.++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|++++...|...
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 777777788888878888888888888777776 5677777788888888888888888887777754411
Q ss_pred -----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 749 -----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 749 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
++.++..+|.++...|++++|...+++++...|++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 35677777788888888888777777777666543
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=2.9e-20 Score=215.02 Aligned_cols=460 Identities=12% Similarity=0.081 Sum_probs=321.1
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHH
Q 002286 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (942)
Q Consensus 36 ~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~ 115 (942)
+..+++---..+.+|...|.+.+|+.+|++++.. +. .|+++ .....+..++.+....++.. +.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s-~fs~n--~~LqnlLi~tAIkaD~~Rv~-----------eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NS-VFSEH--RNLQNLLILTAIKADRTRVM-----------EYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CC-ccccc--HHHHHHHHHHHHHhChhhHH-----------HHHH
Confidence 4455555567788899999999999999999833 32 24443 22333333344433232222 3443
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...|++++|+++++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 333222 2238999999999999999999972 11111 222233788999999999876 33
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002286 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 275 (942)
+.+|+.+|.++...|++++|+..|.++ +++..+..++.++...|+ +++|+++|..+.+..++. .+...+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcccc-cccHHHH
Confidence 678999999999999999999999875 788999999999999999 999999999999887443 2334588
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc
Q 002286 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (942)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~ 355 (942)
.+|.+.++++....+. . .+ +...+..+|..+...|+|++|..+|.++- .|..+|.++.+.
T Consensus 1175 faYAKl~rleele~fI----~----~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 8899998888544332 1 12 23566789999999999999999998863 488899999999
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
|++++|++.++++ .+..+|...+.++...|++..|..+... +..+ ++.+..++..| ..|.+++|+.+++.
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988 5568999999999999999999988774 4334 44555788888 99999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhc
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFE--KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (942)
++.+.+. ...++..+|.++.+ .++..++++.|...+...+..
T Consensus 1306 aL~Lera-----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~------------------------------- 1349 (1630)
T 1xi4_A 1306 ALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL------------------------------- 1349 (1630)
T ss_pred HhccChh-----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh-------------------------------
Confidence 9876544 46777777777664 567777888887766532100
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH------------hCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
........|..+..+|.+-|+++.|....-.... ..+.+++.+++.+..|. +....++.
T Consensus 1350 -------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ln 1420 (1630)
T 1xi4_A 1350 -------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN 1420 (1630)
T ss_pred -------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHH
Confidence 0114667788888899999999998854433221 24556777777766666 44455565
Q ss_pred HHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHh
Q 002286 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 581 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.+..++.-.-+... ....+.+.|...-+..++..+
T Consensus 1421 dLl~~l~~rlD~~R----~V~l~~~~~~l~lik~yl~~v 1455 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHTR----AVNYFSKVKQLPLVKPYLRSV 1455 (1630)
T ss_pred HHHHHhhhcCChHH----HHHHHHHcCChHHhHHHHHHH
Confidence 55555532222221 222334445555555554433
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=7.6e-20 Score=211.61 Aligned_cols=382 Identities=14% Similarity=0.112 Sum_probs=279.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----N--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
+|+-.-..+..|...|.+.+|++.|++++ ..|+ + ...++.++.+....++..+.+.-+...+ .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d----------~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD----------A 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc----------H
Confidence 44555667788889999999999999998 4454 3 3333333333333334333333333211 1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
-.+|.++..+|.+++|...|+++- .+..+ +..++...++ +++|++.++++ +.+.+|..+|.++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~n---ldrAiE~Aerv-----n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGN---LDRAYEFAERC-----NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhh---HHHHHHHHHhc-----CCHHHHHHHHHHHHh
Confidence 238888999999999999999862 12222 2222335555 88888888755 668899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|++++|+..|.++ .++..+..+|.++...|++++|+++|..+.+..+ +... ...+|.+|.+.+++++
T Consensus 1118 ~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~I--dt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYV--ETELIFALAKTNRLAE 1185 (1630)
T ss_pred CCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccc--cHHHHHHHHhhcCHHH
Confidence 99999999998774 4568888899999999999999999998886321 1112 2248888888888874
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
++.| + ..|+ ...+..+|..+...|++++|+.+|.++ ..|..++.++ ..|+++.|++.++++.
T Consensus 1186 -le~f---I-~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1186 -LEEF---I-NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred -HHHH---H-hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 4444 2 2343 455667999999999999999999885 4788888888 8899999999888872
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCC
Q 002286 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (942)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (942)
+..+|...+.++...|++..|..+......
T Consensus 1249 -------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------------------------------------------- 1278 (1630)
T 1xi4_A 1249 -------STRTWKEVCFACVDGKEFRLAQMCGLHIVV------------------------------------------- 1278 (1630)
T ss_pred -------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------------------------------------------
Confidence 468888888889899999888887765322
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHHhhcC-----CC
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNG-----KY 592 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~p-----~~ 592 (942)
.+..+..++..|...|.+++|+.+++.++..+|.+...+..++.++.+ -++..+++++|...+.+.| .+
T Consensus 1279 ----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1279 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 445566788888999999999999999999888888888777777665 4567778888887777666 67
Q ss_pred hhHHHHhhhhhccccchHHHHHHHH
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+..|..+..+|.+.|+++.|....-
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7788888889999999998884433
No 31
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=1.8e-23 Score=230.83 Aligned_cols=386 Identities=12% Similarity=0.085 Sum_probs=272.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCCh---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
..+|..+...|++++|+.+|.++.+. ..+.+++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788899999999999999999862 4567889999999999998 9999999999875 77889999997
Q ss_pred HHHcC-----CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002286 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (942)
Q Consensus 386 ~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 459 (942)
+...+ ++++|+.+|++++... ++.+++.+|.+| ..+...++...++......+.. .+..++.+|.++.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 76665 8899999999999854 455889999999 6665554444444444433332 3678889999999
Q ss_pred HcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcC
Q 002286 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (942)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (942)
..+.++++.......... ....++.+++.+|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~------------------------------------------a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA------------------------------------------ALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH------------------------------------------HTTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHHcC
Confidence 998665555543333221 01124458999999999999
Q ss_pred ---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHhhcCCChhHHHHhhhh-h--ccccch
Q 002286 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (942)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (942)
++++|+.+|+++....|.....++.+|.++... +++++|+.+|+++. |.++.+++.+|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999998888889999998765 78999999999987 8899999999998 4 567889
Q ss_pred HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--
Q 002286 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (942)
Q Consensus 610 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-- 687 (942)
++|+..|+++.... +..+.+.+|.+ |....... .++++|+.+|+++. |+++.+.+.+|.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~g~~--------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGKWVP--------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC--------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCCCCC--------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999988764 66778888888 76321000 38899999999988 8889999999988876
Q ss_pred --cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 002286 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (942)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~ 761 (942)
..++++|+.+|+++.+. .++.+.+++|.+|.. ..++.+|+.+|+.+... .++.+...++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34888999999988774 357888899998875 35888999999888875 23556666666543
Q ss_pred H--cccHHHHHHHHHHHHHh
Q 002286 762 E--AEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 762 ~--~g~~~~A~~~~~~al~~ 779 (942)
. .++..+|...+++....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHh
Confidence 3 33555666666655544
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=2e-23 Score=215.39 Aligned_cols=252 Identities=13% Similarity=0.088 Sum_probs=175.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~l 203 (942)
++..++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ...++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567888999999999999999999999999999988999999999999999999999999998 4433 23347889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|+ +++|+..+++++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988899999999998888 8899999988888888888777777744444446
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhhhcHHHHHHHc
Q 002286 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (942)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~-----~~~~~~~la~~~~~~ 355 (942)
+++|+..+++++... |....+++.+|.++...|+ +++|+..|+++++.....+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 666666666665543 3334555555555555555 55555555555543321122 113344444444444
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
|++++|+.+|+++++.+|+++.++..++.+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 455555555554444444444444444433
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.9e-23 Score=210.64 Aligned_cols=240 Identities=12% Similarity=0.026 Sum_probs=225.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC-------hhHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNAL 596 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~ 596 (942)
.+..+..+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+.++.+++...|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 889999999999999999999999999999999877 6899
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
..+|.++...|++++|+..|++++...|. +.+ +... |++++|+..+++++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchHH
Confidence 99999999999999999999999998775 344 6667 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 756 (942)
++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|++++.. .+.++.++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 213 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHH
Confidence 999999999999999999999999999997 78999999999999999999999999999998 56679999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhC------CCChhhHhhHHHH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 793 (942)
|.++...|++++|+..++++++++ |++..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 8888877777654
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=2.4e-23 Score=214.84 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=225.3
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH----HHHh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA----LSML 599 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~----~~~l 599 (942)
++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++. .|.++.. +..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999 5555554 8999
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999887 67788999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC---HHHHHHHHHHHHhhhCCCCC------H
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 750 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~------~ 750 (942)
.+|......+++++|+..|+++++..| .++.+++.+|.++...|+ +++|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999444455699999999999999998 779999999999999999 99999999999998633232 4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 7889999999999999999999999999999999988777665
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=1.2e-22 Score=200.39 Aligned_cols=200 Identities=18% Similarity=0.112 Sum_probs=160.3
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999998 77788999
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
.++... |++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++ +++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 899999999999999999999999999999988888 888999999998888 88888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+..|+++-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888777654 5556777777777777777777777776653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2e-22 Score=206.09 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhHh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~ 201 (942)
+..+..+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|... ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4567778888888888888888888888887 7788888888888888888888888888888776652 46677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|++++|+..|++++..+|. +.++...|+ +++|+..+++++..+|.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~------------- 139 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKA------------- 139 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHH-------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchH-------------
Confidence 7888888888888888888888887776 334445555 6777777777666555444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
.++..+|.++...|++++|+..|.+++. ..|....++..+|.++...|++++|
T Consensus 140 ------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 140 ------------------------EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHH
Confidence 4555566666666666666666666665 3345556677777777777777777
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHH
Q 002286 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (942)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~ 418 (942)
+..+++++..+|+++.++..+|.++...|++++|+..++++++++ |++..++..++.
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776 666666555544
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=1.5e-22 Score=223.55 Aligned_cols=378 Identities=14% Similarity=0.119 Sum_probs=159.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+|..++..|++++|+..|+++... .++.+++.+|.++...|++ ++|+.+|++++.. + +..++.+|.++...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhC
Confidence 455555555555555555555443 2444555555555555555 5555555555543 1 23344555544443
Q ss_pred C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 211 G-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 211 g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
| ++++|+.+|+++++. +++.+++.||.+|...+....-.++...+.++... .++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~----------------- 141 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYP----------------- 141 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCT-----------------
T ss_pred CCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCH-----------------
Confidence 3 445555555555542 22335555555555443311112222223222211 123
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC---ChHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---DFRSAL 362 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~ 362 (942)
.+++.+|.+|...+.++++........+... ...+.+++.+|.+|...| ++++|+
T Consensus 142 --------------------~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 142 --------------------EAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp --------------------THHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 3444444444444422222222111111100 111124455555555555 555555
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-H---hcCCHhHHHHHHHH
Q 002286 363 TNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGEL-L---ISSDTGAALDAFKT 434 (942)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~---~~~~~~~A~~~~~~ 434 (942)
.+|+++....|.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+ + ..+++++|+.+|++
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 555555555555555445555555433 45555555555544 4555555555554 2 33455555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKG-----EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
+.+. .++..++++|.+|. .| ++++|+.+|+++.
T Consensus 277 Aa~~-------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---------------------------------- 314 (452)
T 3e4b_A 277 GRAA-------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---------------------------------- 314 (452)
T ss_dssp HHHT-------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------------------------------
T ss_pred HHHC-------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------------------------------
Confidence 4431 03445555555554 33 5555555555543
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHH
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIEL 581 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~ 581 (942)
+.++.+.+++|.+|.. ..++++|..+|+++.+ +.++.+.+.+|.+|.. ..++.+|..+
T Consensus 315 ------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 315 ------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 1244555555555544 3355555555555543 2334555555555543 3355555555
Q ss_pred HHHHHhhcCCChhHHHHhhhhh--ccccchHHHHHHHHHhhc
Q 002286 582 VNEALKVNGKYPNALSMLGDLE--LKNDDWVKAKETFRAASD 621 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 621 (942)
|+++....+ +.+...++.+. +..++..+|....++..+
T Consensus 381 ~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 381 SQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555555432 23333333332 223344455555544443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=2.3e-22 Score=198.34 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..+|.++...|+.. +|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 347788999999998877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 163 ~~~~~~a~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
.++..+|.++... |++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.++..+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|...++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988754
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=2.9e-21 Score=199.30 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=127.6
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 002286 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (942)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 127 (942)
...|..|+|.+|+..++.....+|+ +.......++.+|+.+|+.. .|+..++. .+|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456678888888888777665542 22445566677787777766 66665544 24545
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
..++..++..+...|++++|+..+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 566667777777777888888888877765 477788888888888888888888887776 555 566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
++..+|++++|+..|+++++.+|++.......+. ++...|+ +++|+..|++++..+|+++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~---~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK---LQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---HHHHHHHHHHHHHhCCCcH
Confidence 7777888888888888777777776544333332 2222233 5566666665555555444
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.4e-21 Score=201.70 Aligned_cols=260 Identities=11% Similarity=0.032 Sum_probs=227.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc-hhHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARL 534 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~ 534 (942)
.-.+..|++..|+..+++... ..|.+ ......++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~-------------------------------------------~~p~~~~e~~~~l~r~ 43 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP-------------------------------------------SSPERDVERDVFLYRA 43 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC-------------------------------------------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------------------------------CCchhhHHHHHHHHHH
Confidence 446778999999999988665 33444 4577888999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--cCCChhHHHHhhhhhccccchHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGKYPNALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A 612 (942)
|...|+++.|+..++. .+|....++..++..+...++.++|+..+++++.. +|+++.++..+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999987765 35667788899999999999999999999999876 599999999999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhcCC
Q 002286 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG--VVLAEKGQ 690 (942)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la--~~~~~~g~ 690 (942)
+..|++ | .+..++..+|.+ |... |++++|+..|++++..+|++.......+ .++...|+
T Consensus 121 l~~l~~-----~-~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 121 LRTLHQ-----G-DSLECMAMTVQI-LLKL------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHTT-----C-CSHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHhC-----C-CCHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 999997 3 367788889999 9998 9999999999999999999876555444 44456689
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHH-H
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD-C 769 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~-A 769 (942)
+++|+.+|+++++..| +++.+++++|.++..+|++++|+..|++++.. +|.++.++.++|.++...|+..+ +
T Consensus 182 ~~eA~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCS-----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999987 78999999999999999999999999999999 67789999999999999999976 5
Q ss_pred HHHHHHHHHhCCCChhhH
Q 002286 770 KKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 770 ~~~~~~al~~~p~~~~~~ 787 (942)
..++++++.++|+++.+.
T Consensus 255 ~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCChHHH
Confidence 789999999999998765
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=219.31 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=228.7
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-----Cc
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~ 196 (942)
.....++..|..++..|++++|+..|++++...|.++ .++..+|.+++..|++++|+..+++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455677788888888888888888888888888774 56778888888888888888888887766311 11
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhccHHh----------HHHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~----------~~~A~~~~~~~ 260 (942)
..++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+... +.++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 4556777888888888888888888877765532 2244455555544443000 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 261 ~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
+++|...+.+++.. ....+....++..+|.++...|++++|+.++.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 45555555544432 1223445677888999999999999999999998875433
Q ss_pred CC---CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 002286 338 PH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (942)
Q Consensus 338 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 408 (942)
.+ ....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 22 233478889999999999999999999998876554 678899999999999999999999999987544
Q ss_pred c------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
. ..++..+|.++ ..|++++|+.++++++.+.+..+... ...++..+|.++...|+...+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 3 67889999999 99999999999999999987764322 247888999999998877543333
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=219.34 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=203.1
Q ss_pred CCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcC
Q 002286 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (942)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 408 (942)
+.....++.+|.++...|++++|+.+|++++...|+++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677888888888888888888888888888774 57788888999999999999998888776 345
Q ss_pred cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 002286 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (942)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~ 466 (942)
...++..+|.++ ..|++++|+..+++++...+..+... ...++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 577888899998 89999999999999998887754322 14688999999999999 999
Q ss_pred HHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHH
Q 002286 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (942)
Q Consensus 467 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (942)
|+.++.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999988742210 0234456789999999999999999999
Q ss_pred HHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhHHHHhhhhhccccchHHHHH
Q 002286 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (942)
.+++++...|.. ..++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876554 3389999999999999999999999999887665 5678889999999999999999
Q ss_pred HHHHhhccC
Q 002286 615 TFRAASDAT 623 (942)
Q Consensus 615 ~~~~~~~~~ 623 (942)
.|.+++...
T Consensus 289 ~~~~a~~~~ 297 (406)
T 3sf4_A 289 YHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=3e-21 Score=212.57 Aligned_cols=279 Identities=16% Similarity=0.070 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc---
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (942)
...+..+|..+...|++++|+..|++++... |.+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------------------------------------------TEDLRT 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------------------------------------------ccChhH
Confidence 4567788999999999999999999999842 333
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------cCC
Q 002286 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGK 591 (942)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~p~ 591 (942)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.. .|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 368899999999999999999999999987 5667889999999999999999999999999998 455
Q ss_pred ChhHHHHhhhhhccccc-----------------hHHHHHHHHHhhccCCC-----CchhHHHhhhhHHHHHHHhhhhcC
Q 002286 592 YPNALSMLGDLELKNDD-----------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRA 649 (942)
Q Consensus 592 ~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~y~~~~~~~~~~ 649 (942)
...++..+|.++...|+ +++|+..+.+++...+. ....++..+|.+ |...
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 236 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-------
Confidence 56689999999999999 99999999998875321 233577788888 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHH
Q 002286 650 PKLEATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAH 722 (942)
Q Consensus 650 ~~~~~~~~~~A~~~~~~~l~~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~ 722 (942)
|++++|+.+|++++...|... .++..+|.++...|++++|+..|++++...+.... .....++.++|.
T Consensus 237 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 237 -----GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999876533 38899999999999999999999999998863211 023678999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 723 VYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 723 ~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++...|++++|+.+|++++...+...+ ..++..+|.+|...|++++|..++++++.+.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998655444 668899999999999999999999999999874
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=1.4e-20 Score=194.36 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH
Q 002286 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A 181 (942)
..+++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4688899999999999873 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 182 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
+..|++++..+|.+ ..++..+|.++...|++++|+..|+++++.+|++......++.. ...|+ +++|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 55577 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 002286 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (942)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 340 (942)
...|.+...+. ++..+...++.++|...+..++...+. .|..+.++..+|.++...|++++|+.+|++++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 99888765543 555666666666666666666543211 112245555555555555555555555555554 2222
Q ss_pred chhhhhcHHHHHHHcCChHHHHHHH
Q 002286 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
. +...+.++...|++++|+..+
T Consensus 248 ~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T---CHHHHHHHHHHHHHHHC----
T ss_pred h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 122244555555555555544
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=8.5e-21 Score=208.99 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=239.1
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCC
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPD 374 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 374 (942)
+.....++.+|..+...|++++|+.+|++++...+.++. ...++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344566778899999999999999999999985322111 1257888999999999999999999999887 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHH-hcCC-----------------HhHHHH
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL-ISSD-----------------TGAALD 430 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~-~~~~-----------------~~~A~~ 430 (942)
...++..+|.+|...|++++|+.++.+++.. .|....++..+|.++ ..|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6788999999999999999999999999988 566778899999999 9999 999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 431 AFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
++++++.+.+..+.. ....++..+|.++...|++++|+.+|++++...+...
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------- 257 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--------------------------- 257 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC---------------------------
Confidence 999999887665432 1246889999999999999999999999998543110
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..+....++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+.+++
T Consensus 258 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 258 ----------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111234588999999999999999999999999877643 6789999999999999999999999
Q ss_pred HHHhhcCCC------hhHHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 584 EALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 584 ~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+++...+.. ..++..+|.++...|++++|...|++++...+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999886543 348889999999999999999999999988754
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=8.4e-21 Score=202.65 Aligned_cols=280 Identities=14% Similarity=0.068 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc---
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (942)
...+...|..+...|++++|+..|++++... |.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 41 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-------------------------------------------TEDLKT 41 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------------------------------------------cccHHH
Confidence 3456778999999999999999999999842 333
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh---
Q 002286 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--- 594 (942)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 594 (942)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++.+++...|....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 568889999999999999999999999876 4455788999999999999999999999999998765543
Q ss_pred ---HHHHhhhhhccccc--------------------hHHHHHHHHHhhccCCC-----CchhHHHhhhhHHHHHHHhhh
Q 002286 595 ---ALSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNE 646 (942)
Q Consensus 595 ---~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~y~~~~~~~ 646 (942)
++..+|.++...|+ +++|+..+.+++...+. ....++..+|.+ |...
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~---- 196 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL---- 196 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH----
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh----
Confidence 88899999999999 99999999998775311 123467788888 8888
Q ss_pred hcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHH
Q 002286 647 KRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWIN 719 (942)
Q Consensus 647 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~ 719 (942)
|++++|+..|++++...|.. ..++..+|.++...|++++|+..++++++..+.... +..+.++.+
T Consensus 197 --------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 197 --------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999876542 338899999999999999999999999998763211 112678899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
+|.++...|++++|+..|++++...+...+ ..++..+|.++...|++++|..++++++.+.+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765544 6688899999999999999999999999988753
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.4e-20 Score=200.99 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC
Q 002286 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQ 391 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~ 391 (942)
+++|+.++.+++... +..+....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 666666666655421 1223344567778888888888888888888887764432 3378888888888899
Q ss_pred HHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC
Q 002286 392 IEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 463 (942)
+++|+.++++++...|.. ..++..+|.++ ..|++++|+.++++++...+..+... ...++..+|.++...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999998888776554 67788888888 89999999999999988877654322 23678889999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002286 464 FESAHQSFKDALGDG 478 (942)
Q Consensus 464 ~~~A~~~~~~al~~~ 478 (942)
+++|..+|++++...
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998853
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.4e-20 Score=190.22 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=169.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHH
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~ 118 (942)
....|+.+|..++..|++++|+..|++++...|. ...++..+|.+|...|+.. +|+..|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~-----------~A~~~~~ 81 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---------DAIPYINFANLLSSVNELE-----------RALAFYD 81 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---------CHHHHHHHHHHHHHTTCHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHcCCHH-----------HHHHHHH
Confidence 4557889999999999999999999988876652 2457778888888888766 8999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
+++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 82 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 160 (243)
T 2q7f_A 82 KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE 160 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999998888 67
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
++..+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+++++..+|+++.++..++.+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999888 88999999999999999888877766554
Q ss_pred H
Q 002286 279 F 279 (942)
Q Consensus 279 ~ 279 (942)
.
T Consensus 238 ~ 238 (243)
T 2q7f_A 238 H 238 (243)
T ss_dssp -
T ss_pred h
Confidence 3
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7e-20 Score=191.82 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~ 175 (942)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~A~ 254 (942)
|++++|...|++++...|.++..+|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999998433899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..|+++++.+|+++.++..++.++...|++++|..+|++++.....+| .....|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998643344 3567888889999999999999999999998
Q ss_pred hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (942)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (942)
..|.++.... ++.+ ..-.+++..+|+++..+..+|.
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 6554333321 1111 1111456678888888877763
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=2.8e-20 Score=188.01 Aligned_cols=215 Identities=19% Similarity=0.218 Sum_probs=131.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888888888888888877 6677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
+...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..+++++...|.++.++.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~-------------- 163 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARF-------------- 163 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHH--------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHH--------------
Confidence 8888888888888888888888877777777777777777 77777777777777666553333
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
.+|.++...|++++|+..|.+++. ..|....++..+|.++...|++++|+..++
T Consensus 164 -----------------------~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 -----------------------QFGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp -----------------------HHHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred -----------------------HHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333334444444444444444443 223334445555555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 002286 367 KVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (942)
++++.+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555555544443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=7e-21 Score=196.67 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=168.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..+++++..+|+++.....++. ....|++++|...
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999999988755544433 2444666666666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
+.+++...+.. .. ...++..+...++.++|+..+.+++...+. .+....+++.+|.++...|++++|+..|++++
T Consensus 167 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---ST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555543222 11 223445555555555555555555431100 00113344444445555555555555555544
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 370 EIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
..+|++... .+.++...|++++|+..+
T Consensus 243 ~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred hCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 444433221 133444444444444443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=7.3e-19 Score=180.98 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=155.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+|.++.+++.+|.++...|++++|+..|++++. |.++.+++.+|.++.. .+++++|+.+|+++++.+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 466777777777777777777777777777776 6667777777777777 777777777777777764 3 556
Q ss_pred HhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 200 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
++.+|.++.. .+++++|+..|+++++.+ ++.++..+|.++.. .++ +++|+..|+++++.. ++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~--- 146 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DG--- 146 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CH---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cH---
Confidence 6777777777 777777777777777653 66677777777766 666 666777776666543 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
.+++.+|.++.. .+++++|+.+|+++++. ....+++.
T Consensus 147 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 147 ----------------------------------DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 445555555555 66666666666666642 23455666
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|.++.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.+|+++++..|+++..
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 6667777777766666544 5666667777766 667777777777777766654443
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=7.6e-19 Score=180.85 Aligned_cols=227 Identities=18% Similarity=0.242 Sum_probs=185.2
Q ss_pred HHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 91 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
.++..+|... ...+++++|+.+|++++. |.++.+++.+|.++.. .|++++|+..|++++..+ ++.+++
T Consensus 7 ~a~~~lg~~~----~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKS----YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHH----HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 4556666655 345789999999999998 7889999999999999 999999999999999875 899999
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 167 GQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 167 ~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
.+|.++.. .+++++|+.+|++++..+ + +.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999874 4 6789999999999 999999999999999976 688999999
Q ss_pred HHHHh----hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 002286 239 VMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (942)
Q Consensus 239 ~~~~~----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~ 314 (942)
.++.. .++ +++|+..|+++++.. ++ .+++.+|.+
T Consensus 154 ~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~-------------------------------------~a~~~lg~~ 191 (273)
T 1ouv_A 154 SLYDAGRGTPKD---LKKALASYDKACDLK--DS-------------------------------------PGCFNAGNM 191 (273)
T ss_dssp HHHHHTSSSCCC---HHHHHHHHHHHHHTT--CH-------------------------------------HHHHHHHHH
T ss_pred HHHHcCCCCCCC---HHHHHHHHHHHHHCC--CH-------------------------------------HHHHHHHHH
Confidence 99988 777 899999998887653 33 445556666
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHH
Q 002286 315 YHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCE 377 (942)
Q Consensus 315 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~ 377 (942)
+.. .+++++|+.+|+++++. ....+++.+|.++.. .+++++|+.+|+++++..|+++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 666 66677777777766652 225566777777777 77777777777777777665443
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=4.9e-17 Score=184.33 Aligned_cols=450 Identities=9% Similarity=-0.046 Sum_probs=327.2
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~ 188 (942)
+-+..|++.+..+|.+...|..++......|.++.+..+|++++...|.....|...+......|+ ++.+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CCchhhHhhHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhc------cHH
Q 002286 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (942)
Q Consensus 189 l~~~p--~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~------~~~ 248 (942)
+...| .+ ..+|..........++. +.....|++++.. +|.....|..........+ ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 45666655555555543 3344788888863 6777778877766554311 112
Q ss_pred hHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHH
Q 002286 249 GIRKGMEKMQRAFEIYPYCA--MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (942)
Q Consensus 249 ~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (942)
.++.+..+|.+++.. |... ..+......-...+.. .+.+.+. ....+|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~-----------------------e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHIG-----------------------ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHHH-----------------------HhhHHHHHHHH
Confidence 377888999999864 4332 2222111111000000 0111100 01123334444
Q ss_pred HHHHHHH---hc----CCC---------C-----CchhhhhcHHHHHHHcCC---------hHHHHHHHHHHHHhCCCcH
Q 002286 327 YYMASVK---EI----NKP---------H-----EFIFPYYGLGQVQLKLGD---------FRSALTNFEKVLEIYPDNC 376 (942)
Q Consensus 327 ~~~~a~~---~~----~~~---------~-----~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~~~ 376 (942)
.+..... .+ +.. | ...........+.+...+ .......|++++...|.++
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 4433211 10 000 0 001111112222222222 2345678999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC------CC---
Q 002286 377 ETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE--- 445 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~------~~--- 445 (942)
++|...+..+...|+.++|. .+|++++...|.+...|+.++.+. ..|+++.|...|++++...+... .+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999999999999997 999999999999999999999999 99999999999999998753110 01
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCC
Q 002286 446 --------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (942)
Q Consensus 446 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (942)
....+|...+.+..+.|+.+.|...|.+|+...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--------------------------------------- 464 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--------------------------------------- 464 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---------------------------------------
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 123577888888888999999999999998731
Q ss_pred CCCCCcchhHHHHHHHHHhhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC---Ch
Q 002286 518 VELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK---YP 593 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~ 593 (942)
++....++...|.+....+ +++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ ..
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1223456666677766665 4899999999999999999999989999999999999999999999999883 55
Q ss_pred hHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh
Q 002286 594 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (942)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 629 (942)
.+|..+..+....|+.+.+..+.+++....|+.+..
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 688888999999999999999999999999885543
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=8.8e-20 Score=175.16 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..||.+|...|+.+ +|+..|+++++.+|+++.+++.+|.++...|++++|+..+.+++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 446667777777666655 777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
.++..+|.++...++++.|+..+.+++..+|.+ ..++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 777777777777777777777777777777777 6667777777777777777777777777777777777777777777
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|+ +++|+..|+++++.+|+++
T Consensus 153 ~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HCCC---HHHHHHHHHHHHhCCccCH
Confidence 7777 7777777777777777553
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.2e-19 Score=201.64 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcchhhhh---hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 002286 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~---~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~ 158 (942)
+..+..+...|+..+..... ...-.+.+++|+..+..+....|.++.+++.+|.++...|++ ++|+..|+++++.+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444555555554433321 113356688899999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (942)
|+++.++..+|.++...|++++|+..|++++..+|+ ..++..+|.++... |++++|+..|+++++++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47789999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--------ccHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002286 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (942)
Q Consensus 230 ~~~~~~~l~~~~~~~--------~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 298 (942)
+..+|..+|.++... |+ +++|+..|++++.++| .++.++..+|.++...|++++|...+++++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999888 77 9999999999999998 788777777777777777777777777766644
Q ss_pred CCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (942)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (942)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666544
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=8.1e-19 Score=174.84 Aligned_cols=212 Identities=19% Similarity=0.122 Sum_probs=143.6
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|+..+++++..+|.++.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV---NDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444 4444444444444444444444445555
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 278 FFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 278 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
+... |++++|...+++++. .+..|....++..+|.++...|++++|+.+|.++++ ..|....++..+|.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcC
Confidence 5555 555555555555554 223455667788888888888888888888888887 44666788888999999999
Q ss_pred ChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 357 DFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
++++|+..+++++...| .+..++..++.++...|+.+.|..+++.+...+|+++.+...+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999988 8888888888888999999999999999888899888776544
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=1.7e-19 Score=183.39 Aligned_cols=209 Identities=16% Similarity=0.161 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 638 (942)
+.+++.+|.++...|++++|+.++++++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~- 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF- 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH-
Confidence 4445555555555555555555555555555555555555555555555555555555555555443 34445555555
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIV--QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
|... |++++|+.+|++++. .+|.+..++..+|.++...|++++|+..|.++++..| .++.+
T Consensus 115 ~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 177 (252)
T 2ho1_A 115 LYEQ------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSV 177 (252)
T ss_dssp HHHT------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHH
T ss_pred HHHH------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----ccHHH
Confidence 5555 666666666666666 6677777788888888888888888888888888876 67888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
+..+|.++...|++++|+..|++++.. .+.++.++..++.++...|++++|..++++++..+|+++.++.
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888888887 4456778888888888888888888888888888888876553
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=4.5e-19 Score=180.24 Aligned_cols=211 Identities=16% Similarity=0.106 Sum_probs=142.9
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..+++++..+|.++.++..++.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555 5555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
+...|++++|..++++++. .+..|....++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCC
Confidence 5555555555555555554 223455567777888888888888888888888887 345667778888888888888
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 415 (942)
+++|+..+++++...|.+..++..++.++...|++++|..++++++...|+++.+...
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888776543
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=7e-19 Score=175.27 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=161.6
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHH
Confidence 3567778888888888888888888888888888888888888888888888888888888888888888887 667888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 203 IGLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 203 la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
+|.++... |++++|+..|+++++ .+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~------ 152 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFPPAFKE------ 152 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHH------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCchHHHH------
Confidence 88888888 888888888888888 566667888888888888888 888888888888887777655544
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-CchhhhhcHHHHHHHcCCh
Q 002286 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDF 358 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~la~~~~~~g~~ 358 (942)
+|.++...|++++|+..+.+++.. .| .....+..++.++...|++
T Consensus 153 -------------------------------la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 153 -------------------------------LARTKMLAGQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp -------------------------------HHHHHHHHTCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------HHHHHHHcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcH
Confidence 455555555555555555555542 23 4444555566666666777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKA 381 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~ 381 (942)
+.|..+++.+...+|+++.+...
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 77766666666666766665443
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=6.7e-19 Score=168.99 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=153.5
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 777899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
++...++++.|...+.+++..+|.+..++..+|.++...|+ +++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHhc
Q 002286 286 LVEQLTETALAV 297 (942)
Q Consensus 286 ~a~~~~~~~~~~ 297 (942)
+|+..++++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777777764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.7e-18 Score=181.18 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHh-hcCCChhHHHHhhhhhccc
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~ 606 (942)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|+++.+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 899999999999 7999999999999999999
Q ss_pred cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002286 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (942)
Q Consensus 607 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (942)
|++++|...|+++++..|.....++..+|.+ +... |++++|+..|+++++.+|.+..++.+.+.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998887333478888988 8777 99999999999999999999888877776654
Q ss_pred h-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHc
Q 002286 687 E-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (942)
Q Consensus 687 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~l~~~~~~~ 763 (942)
. .|++++|+.+|+++++..| .++.+|.++|.++...|++++|+..|++++...+.+ ....++..++..+...
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 3 7999999999999999998 789999999999999999999999999999964222 3578999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCChhhH
Q 002286 764 EQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 764 g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
|+.++|..+++++++.+|+++...
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CCHHHHHHHHHHHHHHcccccccc
Confidence 999999999999999999876544
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=1.5e-18 Score=188.65 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhhhh
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFPYY 346 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~ 346 (942)
+|..+...|++++|+..+++++..... .+..+.+++.+|.++...|++++|+.++.+++...+..++ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555555555555555555555543221 2223455555566666666666666666555553322221 223445
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-cCcHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAFI 414 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~ 414 (942)
.+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.++++++. .+ |..+.++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 55555555555555555555555442211 12444555555555555555555555554 23 44444455
Q ss_pred HHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002286 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (942)
.+|.++ ..|++++|+.++++++.+.+..+.+.....+..+|.++...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 555555 4555555555555555444433222222223334444444444
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=3.7e-19 Score=197.73 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
.+.+++|+..++.+....|.++.+++.+|.++...|+| ++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34578888999999999999999999999999999999 99999999999999999 78899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhh---------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|+++++.+|+ ..++..+|.++... |+ +++|+..|++++..+|+++.++..+|.++...
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------- 226 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL--------- 226 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------
Confidence 9999999999 79999999999998 77 99999999999999998886666665554332
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhhhcHHHHHHHcCChHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (942)
++..+. ..|++++|+..|++++.. .| ....+++.+|.++...|++++|+..|++
T Consensus 227 -----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 227 -----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp -----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000000 003444444444444442 23 4444455555555555555555555555
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+++.+|++..++..++.++...|++++|+..+
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555544444433
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=8.5e-19 Score=190.47 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-------c
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (942)
..++.+|..+...|++++|+.+|.+++..... ++....+++.+|.++...|++++|+.++.++++..+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975332 3335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC-CCC
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (942)
..++..+|.+|...|++++|+.+|.+++.+.|.. ..++..+|.++ ..|++++|+.++++++.+.+..+. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 5689999999999999999999999999875433 36899999999 999999999999999999887766 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
+.++.++|.++...|++++|+.++++++...+.. .+|.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853211 12233344
Q ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.....
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6779999999999 77777777765 334445678889999999999999999999999887643
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.81 E-value=1.3e-15 Score=172.75 Aligned_cols=228 Identities=7% Similarity=-0.040 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhh
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (942)
......|++++...|.+++.|+..+......|+.++|. ..|++++...|.+..+|..++.+....|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567889999999999999999999998899988897 99999999999988888899999999999999999999988
Q ss_pred ccC-----------CCC----------chhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-CCCCHHHH
Q 002286 621 DAT-----------DGK----------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAA 678 (942)
Q Consensus 621 ~~~-----------~~~----------~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~a~ 678 (942)
... |.+ ...+++..+++ .... |..+.|..+|.++++. .+.....+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~------------~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI------------QGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhcCCCChHHH
Confidence 742 211 11223333332 2222 7789999999999988 44445555
Q ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 679 NGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 679 ~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
...|.+..+.+ +++.|..+|+.+++..| .++..|...+......|+.+.|..+|++++...+.... ..++...
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666666655 59999999999999998 78899999999999999999999999999998654333 5677777
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
...-...|+.+.+.++.+++.+..|+++.+.
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 8888889999999999999999999986544
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=4.2e-18 Score=169.86 Aligned_cols=218 Identities=15% Similarity=0.177 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
|.++.+++.+|.+++..|+|++|+..|++++..+| .+ ..+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34456666666666666666666666666666665 44 44555566666666666666666666666666666666666
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 317 (942)
|.++...|+ +++|+..+++++..+|+++.....++ .++..+|.++..
T Consensus 83 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~------------------------------~~~~~~g~~~~~ 129 (228)
T 4i17_A 83 SAAYRDMKN---NQEYIATLTEGIKAVPGNATIEKLYA------------------------------IYYLKEGQKFQQ 129 (228)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHH------------------------------HHHHHHhHHHHH
Confidence 666666666 66666667666666666663322221 233444445555
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002286 318 KGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (942)
Q Consensus 318 ~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (942)
.|++++|+..|.++++ ..|. ...+++.+|.++...| ...++++....+.....+ .+......+.+++|
T Consensus 130 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A 199 (228)
T 4i17_A 130 AGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKA 199 (228)
T ss_dssp TTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHH
Confidence 5555555555555554 3344 4455555555554332 223334444433332222 22223334455666
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 396 QELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 396 ~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
+.+|+++++++|+++.+...++.+.
T Consensus 200 ~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 200 VDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666666666666666555555443
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=3.5e-18 Score=170.42 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 84 ~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..+..+|.+|...|+.. +|+..|++++..+| .++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 46788899999888877 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~ 233 (942)
.++..+|.++...|++++|+..|++++..+|++ + .++..+|.++...|++++|+..|+++++.+|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 5 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 002286 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (942)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 313 (942)
+..+|.++...|. ..+.++..+.+..+..+ .+......+.+++|+..+++++... |.+..+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999987765 23444445544443332 2333444556677777777777654 444455555555
Q ss_pred HH
Q 002286 314 SY 315 (942)
Q Consensus 314 ~~ 315 (942)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=3e-18 Score=174.86 Aligned_cols=218 Identities=20% Similarity=0.239 Sum_probs=155.1
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-- 196 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-- 196 (942)
..+|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.+++..|++++|+..|++++...|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567888888999999999999999999999998888888 78888889999999999999999999988888653
Q ss_pred hhhHhhHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 197 GAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 197 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~---------------------- 146 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK---------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----------------------
Confidence 4567888888888 7778888888888887777765544333322211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
....++.+|.+|...|++++|+..|++++...+.++....+++.+
T Consensus 147 -----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 191 (261)
T 3qky_A 147 -----------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGA 191 (261)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 113355666666666777777777777666555444455666677
Q ss_pred HHHHHHc----------CChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q 002286 349 GQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQ 396 (942)
Q Consensus 349 a~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~ 396 (942)
|.++... |++++|+..|+++++.+|+++ .+...++.++...++++++.
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777655 777777777777777777763 45566677776666665443
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2.9e-18 Score=197.14 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
..|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..+|.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 002286 283 QHFLVEQLTETALAV 297 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~ 297 (942)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999888888887753
No 71
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.4e-19 Score=182.96 Aligned_cols=392 Identities=13% Similarity=0.084 Sum_probs=189.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
..|++++|..++++. +++.+|..+|.++...|++++|+..|.++ .+ +..+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 445566666666555 22345666666666666666666666442 12 22355555566666666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
++.+.+..++ +.+...++.+|.+.|+ +.++...+. .| +..++..+|..++..|.|++|..+|..+
T Consensus 84 l~~ark~~~~-~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKARE-SYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCcc-chhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 6655553222 4445555566666665 555554442 12 3346777777777777777777777754
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q 002286 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (942)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (942)
..|..+|.++...|++++|++.+.++. .+.+|...+.++...|+++.|..+...+. .+|++ .
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---L 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH---H
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh---H
Confidence 467888899999999999999998872 45678888888999999999977776533 44444 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002286 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (942)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (942)
..++.+|.+.|++++|+.++++++.+++.....+..++.++. .++..+.++.|...+.+.+-........+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999999999883 34455555555544444331000013567889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
+|...++++.|+..........-.. . .|..+. ..+.+..+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~-----------------------~-~f~~~~-------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKE-----------------------G-QFKDII-------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCH-----------------------H-HHHHHH-------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhh-----------------------H-HHHHHH-------hchhHHHHHHHHHHHHH
Confidence 9999999999988665543311000 0 000000 23557788888777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHH
Q 002286 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (942)
+....++..+..++.-.-+. .+...++.+.|+..-...++..+.. .++..+--.+-.+|....+++.=..
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44455566666666221111 3445566778888888888866654 3455666677788888888865333
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=7.7e-18 Score=171.87 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=145.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
..|..+..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|+++.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 87 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-- 87 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch--
Confidence 344455555555555555555555555555555555555 555555555555555555555555555555554321
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHH--------HHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA--------ALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
...+++.+|.+ |+. . |++++|+..|++++
T Consensus 88 ------------------------------~~~a~~~lg~~-~~~~~~~~~~~~------------~~~~~A~~~~~~~l 124 (261)
T 3qky_A 88 ------------------------------VPQAEYERAMC-YYKLSPPYELDQ------------TDTRKAIEAFQLFI 124 (261)
T ss_dssp ------------------------------HHHHHHHHHHH-HHHHCCCTTSCC------------HHHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHH-HHHhcccccccc------------hhHHHHHHHHHHHH
Confidence 12334445555 444 5 99999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
..+|+++.+...+..+ ..+.. .....++.+|.+|...|++++|+..|+++++.+|.++
T Consensus 125 ~~~p~~~~~~~a~~~~--------------~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 125 DRYPNHELVDDATQKI--------------RELRA--------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHCTTCTTHHHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHCcCchhHHHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 9999987665444322 12211 2345688999999999999999999999999998877
Q ss_pred C-HHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHhCCCChhh---HhhHHHHHHHHHH
Q 002286 749 D-AQILLYLARTHYEA----------EQWQDCKKSLLRAIHLAPSNYTL---RFDAGVAMQKFSA 799 (942)
Q Consensus 749 ~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~ 799 (942)
. +.+++.+|.+|... |++++|+..|++++..+|+++.+ ...++.++..+..
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 5 88999999999977 88999999999999999998644 4445555544443
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=5.2e-18 Score=195.04 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+...+++.||.+|..+|+.+ +|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56789999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
++.++..+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 99999999999999999999999999999999999 88899999999999999999999999999999999999999999
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+...|+ +++|++.+++++++.|+
T Consensus 155 l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 155 LQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred HHhccc---HHHHHHHHHHHHHhChh
Confidence 999999 99999999999887654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=2.5e-17 Score=178.33 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=193.7
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------cH
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~ 410 (942)
.++.+|..+...|++++|+..|++++... + ....++..+|.+|...|+++.|+.++.+++...+. .+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46678999999999999999999998763 2 24668899999999999999999999999986432 35
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (942)
.++..+|.++ ..|++++|+.++++++.+.+..+... ...++.++|.++...|++++|+.+|++++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887654332 24688999999999999999999999998732100
Q ss_pred cchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-----CCcHHHHH
Q 002286 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-----QDYVDAYL 563 (942)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~ 563 (942)
.+|....+++++|.++...|++++|..++++++... |.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234457889999999999999999999999999874 44455667
Q ss_pred HHHHHHHHcCC---hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 564 ~l~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77788888888 77888877762 223444567788999999999999999999988764
No 75
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.6e-18 Score=180.81 Aligned_cols=323 Identities=13% Similarity=0.130 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|++++|..++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|+|++|+.+++.
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455999999988 34569999999999999999999999764 4667889999999999999999999999
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 267 (942)
+.+..|+ +.+...++.+|.++|++.++...+. .| +..+|..+|..+...|. +++|...|.++
T Consensus 87 ark~~~~--~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~---yeeA~~~Y~~a------- 148 (449)
T 1b89_A 87 ARKKARE--SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKM---YDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC-----------------C---TTTHHHHHHHT-------
T ss_pred HHHhCcc--chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCC---HHHHHHHHHHh-------
Confidence 9885444 4667889999999999999988875 24 44699999999999999 99999999976
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
..+..++.++...|++++|...+.++. .+.+|...+.++...|+++.|..+....+ ..|+. ...
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~---l~~ 212 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADE---LEE 212 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHH---HHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhh---HHH
Confidence 478899999999999999999999982 45889999999999999999977665422 23333 345
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--GQIEKAQELLRKAAKIDP-----RDAQAFIDLGELL 420 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~ 420 (942)
++..|.+.|.+++|+.++++++..++.+..++..+|.+|.+- ++..+.++.|...+.+.| .++..|..+..+|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999876 577778888877777777 7788899999999
Q ss_pred -hcCCHhHHHHHHHHHHHH------HHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 421 -ISSDTGAALDAFKTARTL------LKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~------~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..++++.|+...-..... +.+ .....+.++++.....|. +....++..+..++.
T Consensus 293 ~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~ 354 (449)
T 1b89_A 293 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 354 (449)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG
T ss_pred HhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 999999987654332100 000 001234567776666665 444555666666553
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=4.3e-17 Score=176.46 Aligned_cols=238 Identities=15% Similarity=0.091 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..++..|..+...|++++|+.+|++++...... ...+....++
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~a~~~ 144 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-------------------------------------SDDIEKAEFH 144 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------------------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------------------------------------CChHHHHHHH
Confidence 356678889999999999999999998743210 0223466788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhH
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNA 595 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~ 595 (942)
+.+|.++...|+++.|+..+.+++...+. .+.++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 224 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999999998876442 25577888888888999999998888888764321 235
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhc-----cCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASD-----ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 670 (942)
+..+|.++...|++++|+..|++++. ..|.. ..++..+|.+ |... |++++|+.+|++++..
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWT-LCKA------------GQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHH
Confidence 66677777777777777777777666 33332 4555666666 6665 6666666666666665
Q ss_pred C-----CCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 671 H-----TSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 671 ~-----p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
. |.....+..++.++...|+ +.+|+..+++... .| ....++..+|.+|...|++++|+.+|++++.
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~-----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HA-----YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2233344555556666665 5555555555211 11 3445566666666666666666666666665
Q ss_pred h
Q 002286 743 K 743 (942)
Q Consensus 743 ~ 743 (942)
.
T Consensus 365 ~ 365 (378)
T 3q15_A 365 A 365 (378)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.76 E-value=5e-16 Score=157.96 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=179.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----Hhc---CChHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~----~~~---g~~~~A~ 182 (942)
+|+..+++++.++|.+..+|..++.++...| ++++++.+++.++..+|++..+|..++.++ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 666 7999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc---HHhHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~~A~~~~ 257 (942)
.++.+++..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+++++..+
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999999 99999999999999999999999999887764 23488999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.++...|+.++|+++|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999888888877776433 3345554443221123333444444444444444444444444433
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=178.63 Aligned_cols=253 Identities=19% Similarity=0.119 Sum_probs=175.3
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 405 (942)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666653 4445667777777777777777777777777765
Q ss_pred ----CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 406 ----DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA--GE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 406 ----~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
.|....++..+|.++ ..|++++|+.++++++...... +. +....++..+|.++...|++++|+.+|++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355667777888888 8888888888888888776433 11 113578889999999999999999999999884
Q ss_pred chhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC
Q 002286 478 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (942)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (942)
.... .....|....++..+|.++...|++++|+..+++++...|.
T Consensus 183 ~~~~-----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 183 YQTK-----------------------------------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHT-----------------------------------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------------------------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2100 00024567788999999999999999999999999975432
Q ss_pred ---------c------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 558 ---------Y------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 558 ---------~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
. ...+...+..+...+.+.+|...+..+....|..+.++..+|.++...|++++|...|+++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2334444555666778888889999999999999999999999999999999999999999887
Q ss_pred CCC
Q 002286 623 TDG 625 (942)
Q Consensus 623 ~~~ 625 (942)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 553
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=177.24 Aligned_cols=253 Identities=15% Similarity=0.132 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CC
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NK 337 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~ 337 (942)
..++..+|.++...|++++|..++++++... +..+....++..+|.++...|++++|+.+|.+++... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444321 1234445566666666666666666666666666532 23
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 405 (942)
.+....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666552 334556666666666666666666666666665
Q ss_pred ----CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 406 ----DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 406 ----~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.|....++..+|.++ ..|++++|+..+++++...+.... ......+.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 455555666666666 666666666666666655443100 00000011
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
....+...+..+...+.+.+|...+..+...+|
T Consensus 243 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 243 -----------------------------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp -----------------------------------------------HHHHHHHC-------CCSCCCC---------CH
T ss_pred -----------------------------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 112222233334444555556666666666666
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
..+.++..+|.++...|++++|+.++++++++.|.
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66677777777777777777777777777766553
No 80
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=4e-16 Score=158.67 Aligned_cols=241 Identities=10% Similarity=-0.030 Sum_probs=192.9
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCchhhHhhHHHHH----HHc--
Q 002286 140 AKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL-- 210 (942)
Q Consensus 140 ~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~----~~~-- 210 (942)
..|.+ ++|+.++++++..+|++..+|..++.++...| ++++++.++..++..+|++ ..+|+..+.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhccc
Confidence 33444 68999999999999999999999999999999 9999999999999999999 77788899998 777
Q ss_pred -CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 002286 211 -GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (942)
Q Consensus 211 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a 287 (942)
+++++++..+.++++.+|.+..+|...+.+....|. ++ +++..+.+++..+|.+..+|...+.++...+...
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-- 197 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-- 197 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC--
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--
Confidence 789999999999999999999999999999999887 77 9999999999999999988877776665544300
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH-HHHHHH
Q 002286 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNFE 366 (942)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~ 366 (942)
....+++++.++.+++. .+|.+..+|+.++.++...|+... ...++.
T Consensus 198 -----------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 198 -----------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred -----------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 00015666777777766 456677777777777777776444 334555
Q ss_pred HHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHH
Q 002286 367 KVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGE 418 (942)
Q Consensus 367 ~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 418 (942)
+++... |.++.++..++.++.+.|+.++|+++|+.+.+ .+|.....|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 555554 67778888888888888888888888888876 68887777766654
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=6.6e-18 Score=154.80 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.+++++|+..+.+++..+|.++..++.+|.+|+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
++++++|++ +.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999 78899999999999999877765 589999999999999999998887775
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=6.7e-16 Score=167.04 Aligned_cols=278 Identities=14% Similarity=0.055 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-----hh
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~ 198 (942)
.++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3455667777777777777777777776665442 2455666667777777777777777766654331 12
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
++..+|.++...|++++|+..+++++... |....++..+|.++...|+ +++|...+.+++...|...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 24556666666666666666666666543 1122334445555555555 5555555555555444321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh--hh--h
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF--PY--Y 346 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~--~ 346 (942)
++....++..+|.++...|++++|..++.+++........... .. .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 1112345666667777777777777777766653222111111 11 1
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l 416 (942)
.++.++...|++++|...+.+++...|.. ...+..++.++...|++++|...+++++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23344566677777777776666554432 224556667777777777777777766654322 12355666
Q ss_pred HHHH-hcCCHhHHHHHHHHHHHHHHH
Q 002286 417 GELL-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
+.++ ..|++++|...+++++...+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666 667777777777766666554
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=7.1e-16 Score=166.82 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=194.7
Q ss_pred HHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS-----TWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 87 ~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
...+.++...|... ...|++++|+..+.+++...|.+.. ++..+|.++...|++++|...+++++...|..
T Consensus 11 ~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 11 TMHAEFNALRAQVA----INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 44577777777766 3578899999999999998876543 57788999999999999999999999875533
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-------CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 162 ------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 162 ------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
..++..+|.++...|++++|+..+++++...+. ....++..+|.++...|++++|...+++++...|
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 234678999999999999999999999987531 1144567799999999999999999999999987
Q ss_pred CC-----HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002286 229 EN-----VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (942)
Q Consensus 229 ~~-----~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~ 301 (942)
.. ..++..+|.++...|+ +++|...+++++...+. .+..+..
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------- 215 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGD---LDNARSQLNRLENLLGNGKYHSDWIS---------------------------- 215 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCCCHHHHH----------------------------
T ss_pred ccCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhccCcchhHHH----------------------------
Confidence 52 4567778888888888 88888888887765322 1111110
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC------
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------ 374 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------ 374 (942)
......+.++...|++++|..++.+++...+..+. ....+..+|.++...|++++|...+++++...+.
T Consensus 216 ----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 216 ----NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 01112333455556666666666555532111100 1123445666666666666666666666554321
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
...++..+|.++...|++++|...+.+++...
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 12466667777777777777777777776654
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=6.9e-18 Score=154.65 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
+|.++...|++++|+..+.+++..+|+++.+++.+|.+|+..|+|++|+..|+++++.+|++ +.+++.+|.++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
++|+..|+++++++|+++.++..+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999998888888877764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=7.9e-17 Score=166.87 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
+|..++.++-+.-+.....+ .++.. + ++++|+..|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666666666655432222 12232 2 488999998887 55678889999999999999
Q ss_pred HHhCCCC-----chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhh-ccHHhHHHHHHH
Q 002286 189 LQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (942)
Q Consensus 189 l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~~~~A~~~ 256 (942)
+.+.+.. ...++..+|.+|..+|++++|+.+|++++++.|.. ..++..+|.++... |+ +++|+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 8875321 24578889999999999999999999998876542 34566677777664 66 7777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 336 (942)
|++++.+.|... .......++..+|.++...|++++|+.+|++++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 777766654321 0011235677888999999999999999999987543
Q ss_pred CCCCc----hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 002286 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~~l~~ 405 (942)
..+.. ..+++.+|.++...|++++|+..|++++.++|+... .+..++..+. ..+++++|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 33221 125678899999999999999999999998887654 3444555554 457899999999999888
Q ss_pred CcCcHHHHHHHHHHH
Q 002286 406 DPRDAQAFIDLGELL 420 (942)
Q Consensus 406 ~p~~~~~~~~la~~~ 420 (942)
+|....++..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887766665555444
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=4e-16 Score=149.71 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 82 ~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
...++..+|.+|...|+.. +|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4556777788887777666 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
+.++..+|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 677888888888888888888888888888888888888888888
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
...|+ +++|+..+++++..+|+++
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888877665
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.7e-17 Score=186.46 Aligned_cols=200 Identities=11% Similarity=-0.014 Sum_probs=175.8
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
..+|+++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888998888877 88999999999999999 89999999999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++ +..|+++++.+|+++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYYMASV 332 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~ 332 (942)
+|.++...|++++|+..+++++... |....+++.+|.++...|+.+++ ...+.++.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTS---RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTS---TTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccC---cccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 9999999999999999999988654 77788999999998876664333 33444333
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=3.9e-16 Score=154.74 Aligned_cols=210 Identities=11% Similarity=0.111 Sum_probs=166.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh---HHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 597 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 597 (942)
.+..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999998876 478999999999999999999999999999999876 788
Q ss_pred HhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 002286 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (942)
.+|.++...|.. .+. .+..++.. +... |++++|+..|+++++.+|+++.+
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 889888766532 111 12234444 4444 99999999999999999998876
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
...+..+ ..+.. ......+.+|.+|...|++.+|+..|+++++.+|+++. +.+++.+
T Consensus 133 ~~a~~~l--------------~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRL--------------VFLKD--------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 6433221 11111 22345678999999999999999999999999876554 6899999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
|.++.+.|++++|++.++++....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999997754
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=4e-16 Score=149.74 Aligned_cols=173 Identities=18% Similarity=0.191 Sum_probs=160.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHH
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~ 118 (942)
....|+.+|..|+..|++++|+..+++++...|. ...++..+|.+|...|+.. +|+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------~A~~~~~ 66 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---------DVDVALHLGIAYVKTGAVD-----------RGTELLE 66 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---------CHHHHHHHHHHHHHTTCHH-----------HHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---------ChHHHHHHHHHHHHcCCHH-----------HHHHHHH
Confidence 3568999999999999999999999999987653 2457888999999888776 9999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
+++..+|.++.++..+|.++...|++++|...|++++...|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 145 (186)
T 3as5_A 67 RSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GK 145 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
++..+|.++...|++++|...++++++.+|++..
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 8999999999999999999999999999887643
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=3.1e-16 Score=162.44 Aligned_cols=233 Identities=17% Similarity=0.103 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 002286 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 391 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (942)
++++|+..|.++ +.++ ..|++++|+..|.+++.+.+..+.... ..++.++|.++...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666666655 3455 677777777777777777665443222 467888999999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-CCHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (942)
.+|++++...+... .......++.++|.+|... |++++|+..
T Consensus 98 ~~~~~Al~l~~~~g-------------------------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 98 DSLENAIQIFTHRG-------------------------------------QFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999988532110 1112356888999999996 999999999
Q ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-------HHHHhhhhhccccchHHHHH
Q 002286 548 YRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 548 ~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~ 614 (942)
|++++...|.. ..++..+|.++...|++++|+.+|++++...|+++. ++..+|.++...|++++|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988754 567899999999999999999999999999988765 56889999999999999999
Q ss_pred HHHHhhccCCCCch----hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002286 615 TFRAASDATDGKDS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 685 (942)
Q Consensus 615 ~~~~~~~~~~~~~~----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 685 (942)
.|++++...|.... ..+..++.. |... ..+++.+|+..|++++.++|.+...+..+-..+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~----------~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDA-VNEG----------DSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHH-HHTT----------CTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC----------CHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999998876321 122223333 2211 017799999999999999998776666555444
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=2.1e-16 Score=154.36 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=96.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
++..++..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999988888 77777777777777777777777
Q ss_pred hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
.+|++ ..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ .....+...+.++
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~ 150 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKL 150 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC--
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 77776 56667777777777777777777777777777777777777776655543 1133444444444
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=2.9e-16 Score=153.28 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHH----------------HHHHHHHcchhhhh
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA----------------LGVYYTYLGKIETK 102 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~y~~~g~~~~~ 102 (942)
..+.++..|..++..|++++|+..|++++..+|+ ...++.. +|.+|...|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-- 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-- 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH--
Confidence 4568999999999999999999999999887662 3344444 666666666555
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--hHH
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSD 180 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~~~ 180 (942)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.+++..|+ ...
T Consensus 72 ---------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 72 ---------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777776665543 334
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+...+.+++. |......++.+|.++...|++++|+..|+++++++|+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4555555542 2222234556666666677777777777777777765
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=5.3e-16 Score=153.74 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=135.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~ 201 (942)
.+..++.+|..++..|++++|+..|++++...|.++ .+++.+|.+++..|++++|+..|+++++.+|+++. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356788889999999999999999999998888763 68888999999999999999999999999888742 3677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|.. ....+..++..+...|+ +++|+..|+++++.+|+++.+...+..
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~----- 138 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKR----- 138 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHH-----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHH-----
Confidence 888888776532 11223345555555666 888888888888888887754322111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
++.+... .....+.+|.++...|++.+|
T Consensus 139 -----------------------------l~~~~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 139 -----------------------------LVFLKDR-----------------------LAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp -----------------------------HHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------------------HHHHHHH-----------------------HHHHHHHHHHHHHHcCcHHHH
Confidence 1111000 001123456666666666677
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
+..|+++++.+|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 777776666666654 456667777777777777777776666666554
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=2.1e-16 Score=139.45 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=109.2
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
++..++|....++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34567898889999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999998888765
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.69 E-value=2.9e-16 Score=182.46 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHh--------hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
.+++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 466789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
++|+..|+++++.+|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 259 RAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 259 ~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
++++++|++..++..++.++...+.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999988666
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=2.5e-14 Score=145.84 Aligned_cols=246 Identities=13% Similarity=0.045 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--h
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~ 178 (942)
++|+..+++++..+|.+..+|..++.++...|. +++++.+++.++..+|++..+|..++.++...|. +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 379999999999999999999999999988776 7899999999999999999999999999999984 8
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-----------
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------- 246 (942)
++++.++.+++..+|.+ ..+|...+.+....|. +++++.++.++++.+|.|..+|..++.+....+.
T Consensus 127 ~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 127 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999 7889999999999998 6999999999999999999999999998877621
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (942)
.+.+++++..+.+++..+|++..+|+.+..++... .|
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~------------------------------------~~------- 242 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG------------------------------------SG------- 242 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS------------------------------------SC-------
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc------------------------------------cC-------
Confidence 14489999999999999999998887654443221 01
Q ss_pred HHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHH
Q 002286 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAA 403 (942)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l 403 (942)
.+.. + -...+.+++++..+.++++..|++...+..++.+.. ..|..++....+.+++
T Consensus 243 -----------~~~~-------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 243 -----------RCEL-------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp -----------GGGC-------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred -----------cccc-------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0000 0 112334567777777777777777554444443322 2466777888888888
Q ss_pred HhCcCcHHHHHHHHHHH
Q 002286 404 KIDPRDAQAFIDLGELL 420 (942)
Q Consensus 404 ~~~p~~~~~~~~la~~~ 420 (942)
+++|....-|..+..-+
T Consensus 303 ~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 303 AVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHCGGGHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHH
Confidence 88888777776665544
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.66 E-value=4.6e-14 Score=143.89 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=196.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 139 ~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...|.++ +|+..+..++..+|++..+|..++.++...|. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3456664 89999999999999999999999999988776 789999999999999999 78899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
..+|. +++++.++.++++.+|.|..+|...+.+....|.. +++++..+.+++..+|.+..+|..++.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~--~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 89999999999999999999999999998888761 488999999999999999988887776654432210
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
+. . .... ...+.+++++.++
T Consensus 197 ----------------~~-----------------------------~---~~~~------------~~~~~~~eEle~~ 216 (331)
T 3dss_A 197 ----------------DS-----------------------------G---PQGR------------LPENVLLKELELV 216 (331)
T ss_dssp ------------------------------------------------------C------------CCHHHHHHHHHHH
T ss_pred ----------------cc-----------------------------c---cccc------------cchHHHHHHHHHH
Confidence 00 0 0000 0113467788888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH----hcCCHhHHHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALD 430 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~~~~~A~~ 430 (942)
.+++..+|++..+|+.+..++... +.+++++..+.++++..|++...+..++.+. ..+..++...
T Consensus 217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHH
Confidence 888888888888887555555544 4589999999999999999976666555543 3577889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVI 457 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (942)
.+.+.+++.|. ...-|..++..
T Consensus 297 ~l~~l~~~Dp~-----r~~~y~d~~~~ 318 (331)
T 3dss_A 297 YFSTLKAVDPM-----RAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCGG-----GHHHHHHHHHH
T ss_pred HHHHHHHhCcc-----hhhHHHHHHHH
Confidence 99999988765 34455555443
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=1.3e-15 Score=157.56 Aligned_cols=222 Identities=16% Similarity=0.116 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCC
Q 002286 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~ 177 (942)
...|.+|+..+.++...+ |..+.++..+|.++...|++++|+..|++++.. +|..+.++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567789999999999999
Q ss_pred hHHHHHHHHHHHHh--------CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH
Q 002286 178 YSDSLEFYKRALQV--------HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (942)
Q Consensus 178 ~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 241 (942)
+++|+..|++++.. +|.. ..++..+|.++...|++++|+..|++++.. .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999987 2433 667889999999999999999999999998 666778899999999
Q ss_pred HhhccHHhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCchhHHHH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEI---------YPYCAMALNYLANHFFFTGQHFLVEQLTETAL---AVTNHGPTKSHSYY 309 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~ 309 (942)
...|+ +++|+..+++++.. .+.....+..++......+....+..+..... ......|....++.
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR 256 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999 99999999999876 33334445555544444333322222111110 11112234444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002286 310 NLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
.+|.++...|++++|..+|++++
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.66 E-value=8.8e-16 Score=135.39 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
++..++|+...++..+|..+.+.|++++|+..|+++++..| .++.+|+++|.++..+|++++|+..|+++++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 44568899999999999999999999999999999999998 88999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHH
Q 002286 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (942)
Q Consensus 746 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 794 (942)
++.++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 6778999999999999999999999999999999999999999998864
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.65 E-value=4.4e-14 Score=144.51 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g-~~~~A~~~~~~~ 188 (942)
+|+..+++++..+|.+..+|..++.++...| .+++++.+++.++..+|++..+|..++.++... + ++++++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc----HHhHHHHHHH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~~~~A~~~ 256 (942)
+..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+++++..
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 788999999999999888 99999999999999999999999999988764 2347899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
+.+++..+|++..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888877764
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=1.8e-15 Score=156.53 Aligned_cols=184 Identities=18% Similarity=0.140 Sum_probs=134.5
Q ss_pred hcCCHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhhhcHH
Q 002286 280 FTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLG 349 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~la 349 (942)
..|++++|+.++++++... ...|..+.++..+|.++...|++++|+.+|.+++... +.++....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555555421 2345667788888888888888888888888888643 34566677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHH
Q 002286 350 QVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAF 413 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~ 413 (942)
.++...|++++|+.+|.+++.. +|....++..+|.++...|++++|+.++++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888888877 4566778888999999999999999999988887 67777888
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC
Q 002286 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAG----EEVPIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (942)
..+|.++ ..|++++|+..+++++...+... ......++..++......+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 8888888 88899999999888888766531 11222444445554444333
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=1.3e-15 Score=144.28 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| + +..+...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4666778999999999999999999999999999999999999999999999999999999999999999 6 4545545
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 002286 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (942)
Q Consensus 204 a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~ 280 (942)
+.+. ...+....|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5443 233444568889999999999999999999999999998 999999999999988865 4466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 002286 281 TGQHFLVEQLTETAL 295 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~ 295 (942)
.|+.++|...|++++
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777666666666655
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=7.6e-16 Score=139.66 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+-..+.+++.++|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
+|++ +.+++.+|.|+..+|++++|+..|++++++.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999864
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=9.4e-16 Score=145.31 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=127.3
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhh
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 634 (942)
+|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| +......+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence 3444566777788888888888888888888888888888888888888888888888888888877766 33333333
Q ss_pred hhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 002286 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (942)
Q Consensus 635 ~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (942)
+.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|+. .++
T Consensus 80 ~~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~ 144 (176)
T 2r5s_A 80 AKLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDG 144 (176)
T ss_dssp HHHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTT
T ss_pred HHHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChH
Confidence 33311111 223347888888888889888888888998888899999999998888888632 346
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.++.++|.++..+|++++|+..|++++..
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 68888888888888888888888888764
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=8.5e-15 Score=150.78 Aligned_cols=169 Identities=11% Similarity=-0.031 Sum_probs=154.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
-|.++..++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+. .......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHH
Confidence 388889999999999999999999999999999999999999999999999999999999999999999965 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFT 281 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~ 281 (942)
+..+...++.+.|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.++++.+|++ ..++..++.++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 8888899999999999999999999999999999999999999 999999999999999988 77788888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 002286 282 GQHFLVEQLTETALA 296 (942)
Q Consensus 282 g~~~~a~~~~~~~~~ 296 (942)
|+.++|...+++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 877777777777653
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.61 E-value=7.4e-14 Score=142.81 Aligned_cols=255 Identities=8% Similarity=-0.039 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc-C-CHHHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL-G-QLGKA 216 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-g-~~~~A 216 (942)
..+..++|+..+++++..+|++..+|..++.++...| .+++++.++..++..+|++ ..+|...+.++..+ + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-y~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-YQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhcCCChHHH
Confidence 3445678999999999999999999999999999999 5999999999999999999 78899999999998 8 99999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----
Q 002286 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--------KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ----- 283 (942)
Q Consensus 217 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----- 283 (942)
+..+.++++.+|.|..+|...+.+....+. ++ +++..+.++++.+|.+..+|...+.++...+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~---~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFST---LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 999999999999999999999999888776 55 99999999999999999999988888877765
Q ss_pred --HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 284 --HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 284 --~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
+++++.++.+++... |.+..+|+.+..++...|....- .+ .++ .|... +. +.. ....-
T Consensus 222 ~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~~~~--~~-~~~-----~~~~~-~~-----~~~---~~~~~ 281 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLPLVP--IL-PAI-----LPYTA-SK-----LNP---DIETV 281 (349)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCSGG--GH-HHH-----GGGTC-------------------
T ss_pred HHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCCccc--cc-ccc-----ccccc-cc-----ccc---cchhH
Confidence 455555555555433 44445555555444444432000 00 000 00000 00 000 00111
Q ss_pred HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHH
Q 002286 362 LTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGE 418 (942)
Q Consensus 362 ~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~la~ 418 (942)
...+..++.. .+.++.++..++.+|...|+.++|...++.+. +.+|-....|...+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 1111111111 14566777777888877788788888887776 557776666655544
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=2.7e-15 Score=136.03 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 734 (942)
+++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++..+|++++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 5556666778889999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 735 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 735 ~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
..|++++.. +|.++.+++.+|.+|...|++++|+..|++++.+.|+++
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999 556788999999999999999999999999999999876
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=1.4e-14 Score=165.96 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---ccHHhHHHHHHHHHHHHHhC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~~A~~~~~~~~~~~ 264 (942)
+++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++..++..++.++... |+ +++|+..++++++.+
T Consensus 83 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 83 ASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999999999999999999999999 76 999999999999999
Q ss_pred CCCHHHHHHHH
Q 002286 265 PYCAMALNYLA 275 (942)
Q Consensus 265 p~~~~~~~~la 275 (942)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99887766555
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.59 E-value=3.3e-14 Score=146.36 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=154.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
...|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ......
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999999998884 444444
Q ss_pred hhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 002286 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (942)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (942)
..+.. +... +..+.|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. .
T Consensus 190 ~~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~ 253 (287)
T 3qou_A 190 VAQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---A 253 (287)
T ss_dssp HHHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---G
T ss_pred HHHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---c
Confidence 44544 5555 778889999999999999999999999999999999999999999999998832 2
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
++.++.++|.++...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3889999999999999999999999998864
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=7.1e-15 Score=133.93 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
+-..|.+++..+|.++.+++.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
|++ +.+++.+|.++..+|++++|+..|+++++++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77799999999999999999999999999999876553
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=3.4e-14 Score=148.17 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------H
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------C 376 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~ 376 (942)
.++..+|.+|.. |++++|+.+|++++...+... ....++..+|.++...|++++|+.+|++++...|.+ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 455666777766 777777777777765432211 124556777777777788888888777777764432 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
.++..+|.++...|++++|+.+|++++ .+|..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 366777788888888888888888888 77754
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=5.2e-14 Score=146.80 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=156.6
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002286 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (942)
Q Consensus 317 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (942)
..|++.+|..+++++.+..+. . ++. ..+++++|+..|.++ |.+|...|++++|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~----~~~------~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--S----FMK------WKPDYDSAASEYAKA--------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--C----SSS------CSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--c----ccC------CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 346777888888877764331 1 111 147788888887765 45677788888888
Q ss_pred HHHHHHHHhCcC------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 002286 397 ELLRKAAKIDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 397 ~~~~~~l~~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (942)
..|.+++.+.+. ...++..+|.++ ..|++++|+.+|++++.+.+..+.... ..++.++|.++.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888888877542 255778888888 888888888888888888766543322 4678888888888 9999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (942)
.+|++++...+... ..+....++.++|.++...|++++|+..|
T Consensus 136 ~~~~~Al~~~~~~~-------------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 136 HLYQQAAAVFENEE-------------------------------------RLRQAAELIGKASRLLVRQQKFDEAAASL 178 (307)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------------------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999887432100 11123567888899999999999999999
Q ss_pred HHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 549 RLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 549 ~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
++++...|.+ ..+++.+|.++...|++++|+.+|++++ .+|....
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9998876543 3477788888888899999999999999 8887654
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.56 E-value=2.4e-14 Score=141.32 Aligned_cols=210 Identities=13% Similarity=0.065 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHhCCCCc-------
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCP------- 196 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~------- 196 (942)
++..|.-+ ..+++..|...|.+++..+|+.+.+|+++ +.++...+++.+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34444444 57899999999999999999999999999 8999999999999999999999877651
Q ss_pred -------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 197 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
..+++.++.++...|++++|...|..++...|++. +.+.+|.++...++ +.+|+..|+.+...
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r---~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER---WTDVIDQVKSAGKW 164 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC---HHHHHHHHTTGGGC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC---HHHHHHHHHHhhcc
Confidence 12233466777777777777777777766666665 66666666666666 66666666533221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-c
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-F 341 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~ 341 (942)
. +|. ...+++.+|.++...|++++|+.+|.+++.. +..|. .
T Consensus 165 ~------------------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~ 207 (282)
T 4f3v_A 165 P------------------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACA 207 (282)
T ss_dssp S------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTH
T ss_pred C------------------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCcccc
Confidence 1 111 1357888888888888888888888888741 11133 5
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
..+++.+|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 567888888888888888888888888888888 66665554
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=1.4e-15 Score=160.37 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHH----HhhcCCCCcchHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (942)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 171 (942)
+.+++|+..+.. ++.++|.. ++...|.... ..+++++|+..|+.++..+|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 456789999999 88888876 4444454432 45678889999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCc--------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 172 ~~~~g~~~~A~~~~~~~l~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
++..|+|++|+..|++++..+|.+. ..+++.+|.|+..+|++++|+..|+++++++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 47899999999999999999999999999999999999999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a-~~~~~~~~ 295 (942)
|.++...|+ +++|+..|++++.++|++..++..++.++...|+++++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999988887 44555554
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.55 E-value=2.4e-14 Score=129.85 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|.+++..+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+ +.+++.+|.++..+|++++|+..|+++++++|+++........+
T Consensus 85 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 E-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp C-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred C-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9 77799999999999999999999999999999887665444433
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=4.3e-14 Score=128.70 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
-..|++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhh
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 789 (942)
+.. .+.++.+++.+|.++...|++++|+..|++++.+.|+++.....
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999 56678899999999999999999999999999999998876433
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.52 E-value=6.7e-14 Score=138.16 Aligned_cols=206 Identities=13% Similarity=-0.010 Sum_probs=159.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhccHHhHHHHHHHHHHHHHhCCCCH------
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA------ 268 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------ 268 (942)
..|..+ ..+++..|...|.+++..+|+..++|..+ +.++...+. ..+++..+.+.+.+.|...
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhcc
Confidence 334443 46777777777777777777777777777 666666666 6677777777777655432
Q ss_pred ---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 ---------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ---------------~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.+...++.++...|+|++|...+..++.. .|... ..+.+|.+++..+++++|+..|..+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 34555788899999999999999887753 36666 889999999999999999999987764
Q ss_pred hcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 334 EINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 334 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
. .++. ...+++.+|.++...|++++|+..|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+
T Consensus 164 ~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 164 W--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred c--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 1 1111 13478999999999999999999999998543 55 6779999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 002286 410 AQAFIDLGE 418 (942)
Q Consensus 410 ~~~~~~la~ 418 (942)
..++..|..
T Consensus 241 ~~~~~aL~~ 249 (282)
T 4f3v_A 241 PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 776655543
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.52 E-value=4.4e-13 Score=130.90 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc----chHHHHHHHH
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFR 617 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 617 (942)
.+|..+|+++.+. .++.+++.+|.++...+++++|+.+|+++... .++.+++.+|.+|.. + ++++|+..|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567778887764 67888999999999999999999999998764 578888999999887 6 7888888888
Q ss_pred HhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh----cCCc
Q 002286 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQF 691 (942)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~----~g~~ 691 (942)
++.... +..+.+.+|.+ |....... +++++|+.+|++++..+| +++.+++.||.+|.. .+++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~-y~~g~g~~--------~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARV-LVNRQAGA--------TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHTT---CHHHHHHHHHH-HTCGGGSS--------CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHCC---CHHHHHHHHHH-HHcCCCCc--------cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 886643 56677778877 66521101 678888888888888877 357788888888887 7778
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh-c-----CHHHHHHHHHHHHhh
Q 002286 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRK 743 (942)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 743 (942)
++|+.+|+++.+. | .++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 146 ~~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 146 VKASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 8888888888776 3 4566788888887754 2 788888888888775
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.51 E-value=2.1e-13 Score=156.11 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=135.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (942)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 002286 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (942)
Q Consensus 221 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~a~~~~~~~~~~ 297 (942)
+++++.+|++..++..+|.++...|+ +++|+..|+++++.+|+++.++..++.++... |++++|...+++++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 9999999999999886
Q ss_pred CCCCCchhHHHHHHH
Q 002286 298 TNHGPTKSHSYYNLA 312 (942)
Q Consensus 298 ~~~~~~~~~~~~~la 312 (942)
.+. ....+..++
T Consensus 158 ~p~---~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG---AVEPFAFLS 169 (568)
T ss_dssp TCC---CSCHHHHTT
T ss_pred CCc---ccChHHHhC
Confidence 633 334444444
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=9.9e-13 Score=118.10 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.. ..++..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4677888999999999999999999998889888888899999999999999999999999988887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
..|++++|+..+++++...|.+..++..+|.++...|+ +++|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999999999888888889999888888 88899999888888775
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.51 E-value=4.8e-11 Score=131.88 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~ 438 (942)
......|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...++..+.....+ +. ++.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HH---HHHHHHH
Confidence 45678999999999999999999999999999999999999999999 99887777655543222 11 2222211
Q ss_pred H---HH-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhh
Q 002286 439 L---KK-----AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (942)
Q Consensus 439 ~---~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (942)
. .. .....+..+|...+....+.+..+.|...|.++ .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---------------------------------- 313 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---------------------------------- 313 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----------------------------------
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----------------------------------
Confidence 0 00 000012356777777777888899999999999 4
Q ss_pred hccCCCCCCCCCcchhHHHHHHHHHhhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 511 FENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.++....++...|.+....+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|..+|+++
T Consensus 314 ---------~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~---- 380 (493)
T 2uy1_A 314 ---------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL---- 380 (493)
T ss_dssp ---------TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----
T ss_pred ---------CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 11223456666676665555 6999999999999999999888888888888999999999999997
Q ss_pred CCChhHHHHhhhhhccccchHHHHHHHHHhhc
Q 002286 590 GKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (942)
Q Consensus 590 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (942)
+.+..+|.....+-...|+.+.+...+++.+.
T Consensus 381 ~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888888888999999998988875
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=1.8e-13 Score=124.12 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
..|++++..+|++..+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 742 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.. .+.++.+++.+|.++...|++++|+.+|++++.+.|+++........+
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 566788999999999999999999999999999999988776554443
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=9.9e-13 Score=128.38 Aligned_cols=174 Identities=10% Similarity=0.053 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~~~~ 187 (942)
+|+.+|.++... .++.+++.+|.++...|++++|+..|+++... .++.+++.+|.++.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577888888764 67888999999999999999999999988764 578888888888887 6 88899999988
Q ss_pred HHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----hccHHhHHHHHHHH
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~~A~~~~ 257 (942)
+.. +.+ +..++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.||.++.. .++ +.+|+..|
T Consensus 79 A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 865 344 6667888888887 7888888888888888877 347888888888887 555 88888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhc
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALAV 297 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~-g-----~~~~a~~~~~~~~~~ 297 (942)
+++... |.++.+++.++.+|... | ++++|..+++++...
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 888877 56666777777766543 2 666666666666543
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=1.3e-12 Score=117.36 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002286 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (942)
Q Consensus 85 ~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 164 (942)
++..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 5667888888887766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|...|.+++..+|++
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999988 7778999999999999999999999999999863
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.5e-13 Score=118.68 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=99.2
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999999999999999999999888 777888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 242 (942)
++..+|++++|+..|+++++++ |.+..++..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998888 887777777766543
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.48 E-value=7.2e-14 Score=147.23 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhc
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~ 175 (942)
.+|+..|.+++..+|.++.++..+|.+++..|++++|+..|++++...|.+ ..++..+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 378888888888889999999999999999999999999999999999998 69999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH-H
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG-M 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A-~ 254 (942)
|+|++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|+ +.+| .
T Consensus 210 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 285 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999998 7777 4
Q ss_pred HHHHHHHHh
Q 002286 255 EKMQRAFEI 263 (942)
Q Consensus 255 ~~~~~~~~~ 263 (942)
..|.+++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666644
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=4.8e-13 Score=126.84 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhcCCh--HHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSL 182 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~-~~~~g~~--~~A~ 182 (942)
..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 356777999999999999999999999999999999999999999999999999999999999999 7889998 9999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
..|++++..+|++ ..+++.+|.++...|++++|+..|+++++.+|++......
T Consensus 102 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 102 AMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999999999998 7778999999999999999999999999999987654433
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=2.4e-13 Score=139.35 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=140.8
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999988 77788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
.++..+|++++|+..|+++++++|++...+.......... .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999998886532222122222221 1122222222345566666666665543 5677
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 002286 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVK 333 (942)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 333 (942)
++|+..++.++... |.+......++..+... +.+++|...|.++..
T Consensus 152 ~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777666543 44445555555555444 556677777766654
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=1.1e-12 Score=131.16 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=169.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 605 (942)
...+.+.+++..+|++.... . .+....+...++..+ . ++ |+..+++.+...+.++.++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 56667778888888876421 1 111222333333332 2 22 7888888887766667777889999999
Q ss_pred ccchHHHHHHHHHhhccCC-CCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 002286 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (942)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~ 678 (942)
.|++++|+..+.+.+...| .....+...++.+ |... |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888776 2355666677777 8888 9999999999999888883 33334
Q ss_pred HHHHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC--------
Q 002286 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (942)
Q Consensus 679 ~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------- 746 (942)
..-+++....| ++.+|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 89999999999887765 3 3445555 899999999999999988887654
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
+.++.++.+++.+.+..|+ +|.+++.++....|++|.+.-
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 5679999899888888997 889999999999999987553
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=6.4e-13 Score=136.12 Aligned_cols=195 Identities=15% Similarity=-0.009 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+..+|..+...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 4 a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP-----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 346778888888888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
.+++.+|.++...|++++|+..|++++..+|+++ ..+...+.... ...++...........|.+......++.+.
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR-LNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 9999999999999999999999999999998762 22222222222 233344444445556777888777777765
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV 297 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~a~~~~~~~~~~ 297 (942)
.|+ +++|+..++++++.+|.+......++..+... +.++++..+|.++...
T Consensus 148 -~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 -AAE---RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHH---HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHH---HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455 99999999999999999998888888777776 7788999999988753
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=3.9e-12 Score=142.70 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--Ch
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~ 178 (942)
++|+..+++++..+|.+..+|..++.++...|+ +++|+.++++++..+|++..+|..++.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 489999999999999999999999999999998 999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-----------
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------- 246 (942)
++++.++.++++.+|.+ ..+|...+.++..+| .+++++.++.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887521
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
.+.++++++.+.+++..+|++..+|+.++.++...+.+.+
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2458999999999999999999999999999888877544
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.6e-12 Score=115.13 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHH
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 751 (942)
|.+...+..+|..+...|++++|+..|+++++..| .++.+|+++|.++..+|++++|+..|++++.. .+.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 73 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 73 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH
Confidence 44567889999999999999999999999999998 78999999999999999999999999999999 566799
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCChhhHhhHHHHHHH
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQK 796 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 796 (942)
+++.+|.++...|++++|+..|++++.++ |+++.++..++.+..+
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999988888887543
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=6.4e-12 Score=117.55 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=116.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+ ..+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999988 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhccHHhHHHHHHHHHHHHHh
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
...|++++|+..|+++++.+|.+..++..++.+ +...|+ +++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999998888555444 666676 88888888776543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=8.5e-13 Score=125.12 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=117.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH-HHHcCCH--H
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL--G 214 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~-~~~~g~~--~ 214 (942)
+...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ +.++..+|.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999999999999999999999999999999999999999999999998 7789999999 8899998 9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 215 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+|+..|++++..+|++..++..+|.++...|+ +++|+..|++++..+|.++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999 9999999999999999886444
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=1.3e-12 Score=121.95 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
++.++..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455677899999999999999999999999999999999999999999999999999999999999999998 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
|.++..+|++++|+..|+++++++|++..+++..+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999988776666443
No 136
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=4.2e-11 Score=119.87 Aligned_cols=246 Identities=13% Similarity=0.037 Sum_probs=151.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 002286 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (942)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 127 (942)
.-+|-.|.|..++.-..+.....+ ......+..+|+.+|+.... .. ++..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~-----------~~~~~~~~Rs~iAlg~~~~~------------------~~-~~~~ 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTD-----------NTLLFYKAKTLLALGQYQSQ------------------DP-TSKL 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCC-----------HHHHHHHHHHHHHTTCCCCC------------------CS-SSTT
T ss_pred HHHHHhhHHHHHHHHHHhcCccch-----------HHHHHHHHHHHHHcCCCccC------------------CC-CCHH
Confidence 345667999999996665433322 23556677888888886521 11 1111
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhhHhhHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP--SCPGAIRLGIGL 205 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~la~ 205 (942)
..+.-.++..+ .++ |+..|++.+...+.+..+++.+|.++...|++++|+.++.+.+..+| .. ..++..++.
T Consensus 71 ~~a~~~la~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~-lea~~l~vq 144 (310)
T 3mv2_B 71 GKVLDLYVQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-TELLLLAIE 144 (310)
T ss_dssp HHHHHHHHHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-HHHHHHHHH
T ss_pred HHHHHHHHHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc-HHHHHHHHH
Confidence 11222222222 233 78888888877666777778999999999999999999999988887 44 677888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPE----NVEALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
++..+|+.+.|...++++.+.+|+ +...+..+ +.+.+..|. +.+.+|...|+++....|+.......+. ++.
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~ 222 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN-LHL 222 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHH
Confidence 999999999999999999888883 22333333 444555551 1288888888888777775222111122 555
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 280 FTGQHFLVEQLTETALAVTNH-------GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..|++++|...++.++...+. .|.++.++.+++.+....|+ +|.+++.++.+
T Consensus 223 ~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 555655555555544432111 13444444444444444444 44444444444
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-12 Score=115.99 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=104.3
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
.|.++.+++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456677888889999999999999999999888888888888888888888899999999999888888887 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 245 (942)
|.++...|++++|+..|++++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888877655
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.40 E-value=3.5e-12 Score=113.68 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=104.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.+++..+|.+ ..+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455667888888888888899999999988888888888888888888888888888888888888888888 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888877765
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=6.6e-12 Score=123.19 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 35666777777777777777777764 33 56677777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.|++++|+..|+++++..|.+. .++..+|.++...|+ +++|+..|++++..+|.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcccc
Confidence 7777777777777777666655 777777777777777 7777777777777777653
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=8.9e-12 Score=122.26 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...++.+|..+...|+.. +|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 334667888888888766 9999999996 34 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.+++.+|.++...|++++|+..|++++...|.+. ..+++.+|.++...|++++|+..|+++++.+
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988862 2778999999999999999999999999999
Q ss_pred CCC
Q 002286 228 PEN 230 (942)
Q Consensus 228 p~~ 230 (942)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.40 E-value=1e-09 Score=121.18 Aligned_cols=209 Identities=6% Similarity=0.017 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhh
Q 002286 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (942)
.......|++++...|.++..|+..+......|+.+.|...+++++.. |.+...+..++... ..++ ....+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~ 269 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 99988877666552 1111 111111111
Q ss_pred ccCC--------CCc-hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q 002286 621 DATD--------GKD-SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-Q 690 (942)
Q Consensus 621 ~~~~--------~~~-~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~ 690 (942)
.... ... ...+...+.. .... +..+.|..+|.++ ...+.....+...|.+....+ +
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp C----------CHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HhhccchhhhhcccccHHHHHHHHHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC
Confidence 1111 000 1122222222 2222 6789999999999 433334455555565555555 6
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHH
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 770 (942)
.+.|..+|+.+++..| +.+..|...+......|+.+.|...|+++. ....++......-...|+.+.+.
T Consensus 336 ~~~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp SHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999887 678888888888889999999999999972 23667777777777789999999
Q ss_pred HHHHHHHHh
Q 002286 771 KSLLRAIHL 779 (942)
Q Consensus 771 ~~~~~al~~ 779 (942)
+.+++++..
T Consensus 405 ~v~~~~~~~ 413 (493)
T 2uy1_A 405 ELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888863
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=1.9e-12 Score=113.02 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~ 95 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSH 95 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999998 67889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
...|++++|+..|+++++.+|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999987643
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.39 E-value=6.4e-12 Score=117.15 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH
Q 002286 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (942)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (942)
++.++.++..+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 456788899999999999999999999999999998 78999999999999999999999999999999 56679
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.+++.+|.++...|++++|+.+|++++.++|+++..+++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988877765
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.39 E-value=5.7e-13 Score=128.93 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=83.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---------------hhh
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAI 199 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~ 199 (942)
+......|.+++|.+.++......+.....+..+|.+++..|+|++|+..|++++...|.++ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33344445555555555544444444455555666666666666666666666666555552 145
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
+..+|.++..+|++++|+..+++++..+|++..+++.+|.++...|+ +++|+..|++++.++|.++.++..++.++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666 666666666666666666666666666655
Q ss_pred hcCCHHHHH
Q 002286 280 FTGQHFLVE 288 (942)
Q Consensus 280 ~~g~~~~a~ 288 (942)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555544433
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.39 E-value=1.1e-11 Score=116.03 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002286 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (942)
Q Consensus 80 ~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 159 (942)
.+....+..+|..+...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356778889999999888776 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh--hHHHHHHHcCCHHHHHHHHHHHHhh
Q 002286 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQL 226 (942)
Q Consensus 160 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 226 (942)
.++.+++.+|.++...|++++|+..|++++..+|.+ ..++. .++..+...|++++|+..+.++...
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 55564 4455588899999999999987654
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.38 E-value=7.2e-13 Score=128.19 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhc
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~a~~~~~~ 175 (942)
+|...+.......+.....+..+|..++..|++++|+..|.+++...|.++ .++..+|.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555444444455567889999999999999999999999999999887 8999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
|++++|+..+++++..+|.+ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++ ..++.
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~ 176 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE---ARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---HHC--
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---HHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999988877 55554
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.5e-11 Score=108.50 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=101.3
Q ss_pred CCCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 124 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
+|.. +.+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4544 67788888899999999999999999988888888888888999989999999999999998888887 667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+|.++...|++++|...|++++..+|+++.++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 888888899999999999998888888888888888877654
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.38 E-value=1.3e-11 Score=127.83 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=144.7
Q ss_pred CCCCCChhHHHHHHHh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcch
Q 002286 20 DQLPRDASDILDILKA-EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (942)
Q Consensus 20 ~~lp~~~~~~~~~l~~-~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 98 (942)
+-+.-++.++...... .+.....+...+..|+.+|++++|+..+.+++...+.. .........+..+|.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 4444456666655443 34556678899999999999999999998876543321 1112344555667777777776
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 002286 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (942)
Q Consensus 99 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~ 165 (942)
.+ +|+..|++++...+.. ..++..+|.+|...|++++|+.+|++++ ...|++. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 65 8999999998765543 3477889999999999999999999998 5566543 588
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----chhhHhhHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (942)
+.+|.++...|+|++|+.++++++...+.. ...+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999998775321 256678899999999999999 7778888764
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.38 E-value=5.7e-12 Score=111.13 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=92.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhHh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~ 201 (942)
..++..+|..++..|+|++|+..|++++..+|+++.++..+|.++...|+|++|+..|+++++++|+.. ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999999999999988763 23677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+|.++..+|++++|+..|++++..+|+ ++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 8899999999999999999999998875 4443
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.37 E-value=8.3e-12 Score=112.40 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=104.1
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+|.++..++.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4577888999999999999999999999999999999999999999999999999999999999999999998 778899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 243 (942)
+|.++...|++++|+..|+++++.+|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 55665555555443
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.36 E-value=3.4e-11 Score=124.56 Aligned_cols=182 Identities=11% Similarity=0.035 Sum_probs=146.1
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh------HHHHhhhhhccccchHHHHHHHHHhhccCCCC-c
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 627 (942)
+|.....+...+..+...|++++|+..+.+++...|.... .+..+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455667778888899999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHhcCCchHHHH
Q 002286 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (942)
Q Consensus 628 ----~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~a~~~la~~~~~~g~~~~A~~ 696 (942)
..++..+|.+ |... |++++|+.+|++++ ...|++. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9988 99999999999999 5556533 588999999999999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHH-HHHHHHHHhhhCCCCC
Q 002286 697 LFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (942)
Q Consensus 697 ~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 749 (942)
.++++++..+.... ...+.+++++|.+|..+|++++| ..+|++++..+....+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999987642211 12377899999999999999999 7779999877544444
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=4.7e-12 Score=111.65 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 749 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 749 (942)
...++..+|.++...|++++|+..|+++++..| .++.+|.++|.+|..+|++++|+..|+++++..|....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778899999999999999999999999998 78999999999999999999999999999998765443
Q ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 750 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
..++..+|.++...|++++|+++|++++...|+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 4688999999999999999999999999999863
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-11 Score=110.46 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.|.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45668899999999999999999999999999999988 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|.++...|+ +++|+..+++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999998888888888776653
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.35 E-value=7.4e-14 Score=153.89 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=140.5
Q ss_pred HHHHHHHHHHH----HhhcCCCCcchHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (942)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~------------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 172 (942)
.++.|+..+++ ++.++|.. +|...|... ...+++++|+..|+.++...|....++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45677777776 67777753 232222211 1345677888888888888888889999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc--------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
+..|+|.+|+..|++++..+|.+. ..+++.+|.|+..+|++++|+..|+++++++|++..+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999999998874 477888999999999999999999999999999999999999
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~ 289 (942)
.++...|+ +++|+..|+++++++|++..++..++.++...+++.++.+
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999999999999998888888888888888776654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=2.1e-11 Score=106.18 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+ ..++..+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999988 77788999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
...|++++|...|+++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999998888887664
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.34 E-value=1.2e-11 Score=110.16 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 157 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
.+|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..+.+++..+|+++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 345567889999999999999999999999999999998 7789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
+|.++...|+ +++|+..+++++..+|.++.++..++.++...|++
T Consensus 86 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999999999999999998888887765
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.34 E-value=4.6e-12 Score=112.42 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHh-----
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV----- 191 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~~a~~~~~~g~~~~A~~~~~~~l~~----- 191 (942)
..++..|..++..|+|++|+..|++++..+|+ +.. +|..+|.++...|+|++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 35677788888888888888888888888887 333 6666677777777777777777766666
Q ss_pred --CCCCchhhH----hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 192 --HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 192 --~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
+|++ ..+| +.+|.++..+|++++|+..|+++++++|++..
T Consensus 92 e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6665 5556 66666666666666666666666666665443
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.33 E-value=2.1e-11 Score=126.24 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhcCCChh------HHHHhhhhhccccchHHHHHHHHHhhccCCC-Cc----hhHH
Q 002286 563 LRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KD----SYAT 631 (942)
Q Consensus 563 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 631 (942)
...+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+..|++++...+. .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33455667777888888888877776666554 2234777777788888888888888875433 22 2257
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (942)
..+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+..++++++.
T Consensus 159 ~~lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 159 NAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888 8888 8999999999998842 1223446677777777777777777777777776
Q ss_pred hcCCCC-CCchhHHHHHHHHHHHhc-CHHHHHHHHHHHHhhh
Q 002286 705 ASGSVF-VQMPDVWINLAHVYFAQG-NFALAMKMYQNCLRKF 744 (942)
Q Consensus 705 ~p~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 744 (942)
.+.... ...+.+++++|.++..+| .+++|+..|++++..+
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 643211 123667777777777777 4577777777777654
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=3e-11 Score=124.98 Aligned_cols=171 Identities=15% Similarity=0.088 Sum_probs=118.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhhhc
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYG 347 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~ 347 (942)
.+..++..|++++|...+++++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3555666677777777777666544333322 1234457888888888888888888888743322222 335778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 414 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 414 (942)
+|.+|...|++++|+.+|+++++. . +....++.++|.+|...|++++|+.++++++.+.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888888752 1 1224577888888888888888888888888765333 67788
Q ss_pred HHHHHH-hcC-CHhHHHHHHHHHHHHHHHcCC
Q 002286 415 DLGELL-ISS-DTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 415 ~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~~ 444 (942)
.+|.++ ..| ++++|+.+|++++.+....+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 888888 777 458888888888887766544
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=4.9e-11 Score=105.90 Aligned_cols=116 Identities=21% Similarity=0.178 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~ 202 (942)
+.+++.+|..++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++..+|+++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35678899999999999999999999999999887 7899999999999999999999999999998873 456888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+|.++..+|++++|+..|++++..+|++..+......+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666555443
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.31 E-value=1.6e-12 Score=143.12 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHh
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~ 174 (942)
|++|+..|..++..+|.....+..+|..++..|+|++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777888888888889999999999999999999999999999999998 6899999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
.|+|++|+..|++++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 66665
Q ss_pred H-HHHHHH
Q 002286 255 E-KMQRAF 261 (942)
Q Consensus 255 ~-~~~~~~ 261 (942)
. .+.+++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 344333
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.1e-11 Score=110.28 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=107.7
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
..+|.+...++.+|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8889999999999999999999999999999988 77
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
+++.+|.++...|++++|+..|++++..+|++..++..++.+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78899999999999999999999999999999988887777654
No 163
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=1.3e-10 Score=130.51 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC-
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG- 211 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g- 211 (942)
..++|+..+++++..+|++..+|..++.++...|+ +++++.++.+++..+|++ ..+|...+.++..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccc
Confidence 34788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------
Q 002286 212 -QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------- 281 (942)
Q Consensus 212 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-------- 281 (942)
++++|+..+.++++.+|.+..+|...+.+....| . ++++++.+.++++.+|.+..+|...+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999999999999999999999998 6 89999999999999999999999999998875
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 282 ------GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 282 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
+.+++++.++.+++... |.+..+|+.++.++...+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCccc
Confidence 45677888888888754 6666888888888888777544
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.30 E-value=1.7e-11 Score=113.95 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
...+...|..++..|+|++|+..|.+++.. +|.++.++..+|.++...|+|++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456788999999999999999999999988 66667888888888888899999999999998
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhh
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQA 244 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~ 244 (942)
.++|++ ..+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888 67788888899889999999999999888888887 5555666555443
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=2.3e-11 Score=106.09 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
.++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999999998 77888999999999999999999999999999999999999999999
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.|+ +++|+..++++++.+|.+.
T Consensus 98 ~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHH---HHHHHHHHHHHHC------
T ss_pred cCC---HHHHHHHHHHHHHhCcCCC
Confidence 988 9999999999999888764
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1.1e-10 Score=102.88 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=108.0
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 158 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
+|.. ..+++.+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 5555 7789999999999999999999999999999988 7778999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
+|.++...|+ +++|+..+++++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999988888887776543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.30 E-value=4.3e-11 Score=111.23 Aligned_cols=122 Identities=13% Similarity=0.193 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--------CCC-----CCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--------GSV-----FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
.+..+..+|..+...|++++|+..|.+++...+ .+. .+..+.+|+++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345678899999999999999999999999821 000 1266789999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh-hhHhhHHHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKF 797 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 797 (942)
+.. ++.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998 677899999999999999999999999999999999998 7788888865544
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.29 E-value=3.8e-11 Score=107.95 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.0
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 156 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
..+|.++..++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|+++++.+|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~ 277 (942)
.+|.++...|+ +++|+..|.+++..+|+ +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 45454444433
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.29 E-value=2.3e-11 Score=104.77 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=96.1
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhhHh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIRL 201 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 201 (942)
+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|. . ..++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~ 80 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWA 80 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHH
Confidence 68888899999999999999999999999999999999999999999999999999999999999999988 7 67788
Q ss_pred hHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 002286 202 GIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 202 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (942)
.+|.++... |++++|+..+++++...|.+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 899999999 99999999999999988865
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.3e-10 Score=126.25 Aligned_cols=175 Identities=9% Similarity=0.108 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IE 449 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~ 449 (942)
++..+|.+|...|++++|..++.+++...+.. ..+...++.++ ..|+++.|+.++++++...+..+.... ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46788999999999999999998888765432 23455677777 889999999999999998887654433 57
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
++..+|.++...|++.+|...+.+++..... ....+....++.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 179 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKK-------------------------------------LDDKPSLVDVHL 179 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------------------------------------SSCSTHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHh-------------------------------------cccchhHHHHHH
Confidence 8899999999999999999999998763210 113455778899
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhCC---Cc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFKYQ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.+++++...|++++|..+|++++...+ +. ...+..+|.++...|++.+|..+|.+++...
T Consensus 180 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 180 LESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999987542 22 4567778888889999999999999988754
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.28 E-value=6.9e-11 Score=102.86 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
.+.++..+|.++...|++++|+..|++++...| .++.++.++|.++...|++++|+..|++++.. .+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 75 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHH
Confidence 456788999999999999999999999999987 78999999999999999999999999999998 45678999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHH
Q 002286 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (942)
Q Consensus 754 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 794 (942)
..+|.++...|++++|...+++++...|+++.++++++.+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988763
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.28 E-value=3.6e-11 Score=116.81 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=123.4
Q ss_pred ccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHh------cCCCCHHH
Q 002286 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (942)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~a 677 (942)
+..|++++|...++.+.. .|.....++..+|.+ |... |++++|+..|++++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666664333322 333355666677777 7766 777777777777777 44556778
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (942)
+..+|.++...|++++|+..+.++++.....+ .+ ....++.++|.++...|++++|+..+++++...+...+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 89999999999999999999999998853221 11 23567899999999999999999999999987655555 44
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++..+|.++...|++++|..++++++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988653
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=2.2e-11 Score=108.08 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------h-----hhHhhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------G-----AIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 226 (942)
...+..+|..++..|+|++|+..|+++++.+|+++ . .+|..+|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45678899999999999999999999999999931 2 28999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 227 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
+|++..+| +.+|.++...|+ +++|+..|+++++++|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999887643
No 174
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.25 E-value=1.3e-10 Score=112.83 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=93.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Q 002286 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (942)
Q Consensus 317 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (942)
..|++++|...++.... .++....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333321 22244455555666666666666666666665552 2233456666677777777
Q ss_pred CHHHHHHHHHHHHHh---Cc----CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 002286 391 QIEKAQELLRKAAKI---DP----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (942)
Q Consensus 391 ~~~~A~~~~~~~l~~---~p----~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~ 461 (942)
++++|+.++.+++.. .+ ....++..+|.++ ..|++++|+..+++++...+..+.... ..++..+|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777766665 22 2244566667777 777777777777777766555432211 24567778888888
Q ss_pred CCHHHHHHHHHHHhhc
Q 002286 462 GEFESAHQSFKDALGD 477 (942)
Q Consensus 462 g~~~~A~~~~~~al~~ 477 (942)
|++++|..++++++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888887764
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.24 E-value=3e-11 Score=106.84 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (942)
Q Consensus 104 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 173 (942)
..+.+.|++|+..++++++.+|+++.+|+.+|.++...|++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998876 47888888888888888888888887777
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
..|.+ .|+. +. ..|++++|+.+|+++++++|++..
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 76532 2222 10 024666666666666666666654
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=5.1e-11 Score=102.58 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=101.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
++|+++.++..+|.++...|++++|+..|+++++..| .++.+++++|.++...|++++|+..|+++++..|...+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence 3688999999999999999999999999999999987 78899999999999999999999999999998543227
Q ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCCh
Q 002286 750 AQILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 750 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 784 (942)
+.++..+|.++... |++++|++++++++...|+++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999999999999 999999999999999999875
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.21 E-value=2.6e-10 Score=101.16 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 237 (942)
.+++.+|.+++..|++++|+..|++++..+|+++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35678899999999999999999999999998832 678999999999999999999999999999999 8899999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
|.++...|+ +++|+..|++++..+|+++.+......+.
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999 99999999999999999987766555443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.21 E-value=2.3e-10 Score=101.73 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-CC--
Q 002286 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (942)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~-- 749 (942)
..+.++..+|.++...|++++|+..|.+++...| .++.+++++|.++...|++++|+..|++++...|.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4466788999999999999999999999999987 789999999999999999999999999999987643 23
Q ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 750 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
+.+++.+|.++...|++++|+.+|++++...| ++.+...++.+....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 688888888875544
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-10 Score=104.66 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=108.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
.+|.+...+..+|..+...|++++|+..|+++++..| ++ +.+++++|.++...|++++|+..|++++.. .
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--D 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--C
Confidence 4578899999999999999999999999999999887 54 889999999999999999999999999998 4
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+.++.+++.+|.++...|++++|+.+|++++..+|+++.++..++.+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 56689999999999999999999999999999999999988887775
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=8.8e-10 Score=121.59 Aligned_cols=204 Identities=11% Similarity=0.096 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
.|.+.+..|..+...|+|++|++.|..+++..|... .++..+|.+|...|++++|+..+.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888888899999999999999988877542 357788888888888888888888888
Q ss_pred HhCCCCc-----hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 190 ~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
...+... ..++..+|.++...|+++.|+..++.++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765442 23455677777778888888888888876532 234567777888888877 788888777
Q ss_pred HHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 259 RAFEIY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYY 328 (942)
Q Consensus 259 ~~~~~~------p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (942)
+++... |....++..++.+|...|++.+|..++++++......+ .....+..+|..+...|++.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 776542 22345666667777777777777777776664322111 12445666677777777777777777
Q ss_pred HHHHH
Q 002286 329 MASVK 333 (942)
Q Consensus 329 ~~a~~ 333 (942)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.19 E-value=1.7e-10 Score=102.59 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~ 200 (942)
.+..++.+|..+...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999877541 4568
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+.+|.++...|++++|+..|+++++..| ++..+..++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 577777777665544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.18 E-value=2.5e-11 Score=127.80 Aligned_cols=138 Identities=18% Similarity=0.237 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
....+..+|..++..|++++|+..|++++...|.+. .+++.+|.++...|+|++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678889999999999999999999999988766 266666666666666666666666666
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.+... .+. .+++...|.+++...|.++
T Consensus 258 ~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCC
Confidence 666666 55566666666666666666666666666666666666666655332 222 5555666666666666544
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=7.8e-12 Score=138.13 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+.++..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 34566677888888999999999999999999999999999999999999999999999999999888 77788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhccHHhHHHHHHHHH-----------HHHHhCCCC
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~ 267 (942)
..+|++++|+..|+++++.+|++..++..++.+ +...|+ +++|+..++ +++...|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999888888888877 677777 888888888 666665543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.16 E-value=4.8e-11 Score=131.84 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC
Q 002286 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (942)
Q Consensus 630 ~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (942)
++..+|.. |+.. |++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|
T Consensus 8 ~~~~lg~~-~~~~------------g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--- 71 (477)
T 1wao_1 8 ELKTQAND-YFKA------------KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--- 71 (477)
T ss_dssp TSSSSSSS-TTTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---
T ss_pred HHHHHHHH-HHHh------------CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---
Confidence 34456666 6666 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH--HHHcccHHHHHHHHH-----------HH
Q 002286 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART--HYEAEQWQDCKKSLL-----------RA 776 (942)
Q Consensus 710 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~a 776 (942)
.++.+++++|.+|..+|++++|+..|+++++..| .++.++..++.+ +...|++++|++.++ ++
T Consensus 72 --~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 147 (477)
T 1wao_1 72 --KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 147 (477)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSS
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhh
Confidence 7899999999999999999999999999999954 445567777777 889999999999999 88
Q ss_pred HHhCCCChhhHhhH
Q 002286 777 IHLAPSNYTLRFDA 790 (942)
Q Consensus 777 l~~~p~~~~~~~~l 790 (942)
+...|+....+++.
T Consensus 148 l~~~~~~~~~~~~~ 161 (477)
T 1wao_1 148 MTIEDEYSGPKLED 161 (477)
T ss_dssp CCCCTTCCSCCCGG
T ss_pred cccccccccccccc
Confidence 88888765544443
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.16 E-value=9.9e-11 Score=103.56 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 002286 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (942)
Q Consensus 142 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (942)
+.+++|+..+++++..+|+++.+|..+|.++...++++.+.... +.+++|+..|+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~~le 70 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHHHHH
Confidence 44556666666666666666666666666655555543222211 01457777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcc--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 222 RALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 222 ~al~~~p~~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
++++++|++..+++.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777777776642 1349999999999999999998777665443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=4.5e-11 Score=103.83 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
|++++|+..|++++.. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555777777777777 4777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCC
Q 002286 185 YKRALQVHPSC 195 (942)
Q Consensus 185 ~~~~l~~~p~~ 195 (942)
|++++...|++
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 77777777777
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.14 E-value=6.7e-11 Score=102.71 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHH
Q 002286 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (942)
..|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 467888899999999888 57788888999999999999999999999999998888 77788889999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHH
Q 002286 217 RQAFQRALQLDPENVEALV 235 (942)
Q Consensus 217 ~~~~~~al~~~p~~~~~~~ 235 (942)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999888888876543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=6.4e-11 Score=124.61 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCc-----------------chHHHHHHHHHHcC
Q 002286 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (942)
Q Consensus 80 ~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~a~~~~~~g 142 (942)
.+....+..+|..++..|+.. +|+..|.+++...|.+. .+++.+|.++...|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666778888888777776 99999999999999876 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH-HHHcCCHHHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 221 (942)
++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445678889999999
Q ss_pred HHHhhCCCCHH
Q 002286 222 RALQLDPENVE 232 (942)
Q Consensus 222 ~al~~~p~~~~ 232 (942)
+++...|+++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.13 E-value=4e-10 Score=119.72 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
.+..+|..++..|++++|+..|++++. .+|.+..++..+|.+++..|+|++|+..+++++..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 477788888888888888888888887 5555666777777777777777777777777777777
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 305 ~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 66 56667777777777777777777777777777777777777766666655
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.11 E-value=5e-10 Score=103.97 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=119.2
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQV 701 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (942)
..++..+|.+ |... |++++|+..|++++...|.. ..++..+|.++...|++++|+..++++
T Consensus 9 ~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466778888 8888 99999999999999876542 247889999999999999999999999
Q ss_pred HHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 002286 702 QEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRA 776 (942)
Q Consensus 702 ~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 776 (942)
++..+....+ ....++.++|.++...|++++|+..+++++...+...+ +.++..+|.++...|++++|..+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9987532111 13668999999999999999999999999987654444 678899999999999999999999999
Q ss_pred HHhCCC
Q 002286 777 IHLAPS 782 (942)
Q Consensus 777 l~~~p~ 782 (942)
+.+...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987654
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.07 E-value=9.7e-10 Score=116.74 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
...+..+|..++..|+|++|+..|++++. .+|.. ..++..+|.++..+|++++|+..++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55665 67789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002286 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (942)
Q Consensus 226 ~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~ 289 (942)
++|+++.+++.+|.++...|+ +++|+..|+++++++|++..++..++.++...++++++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999998888888777766544
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.01 E-value=1.7e-09 Score=100.29 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=79.6
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQA 412 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~ 412 (942)
+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4444444444444444444444444432211 1355566666666666666666666666543321 455
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+..+|.++ ..|++++|+..+++++...+..+... ...++..+|.++...|++++|+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66667777 77777777777777776665543211 1356777888888888888888888888764
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.01 E-value=2.7e-09 Score=92.12 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 002286 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (942)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 738 (942)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467778888888888888888888888888888888888888888876 677888888888888888888888888
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcc
Q 002286 739 NCLRKFYYNTDAQILLYLARTHYEAE 764 (942)
Q Consensus 739 ~al~~~~~~~~~~~~~~l~~~~~~~g 764 (942)
+++...|...+......+...+...|
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 88887665555555555554444433
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.90 E-value=9.1e-09 Score=88.76 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777888888888888888888888888888888888888888888878888888888888888888888887777
Q ss_pred CCCC
Q 002286 192 HPSC 195 (942)
Q Consensus 192 ~p~~ 195 (942)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6643
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.87 E-value=9.1e-09 Score=85.88 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.+|+++.+++.+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++...+...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3577777888888888888888888888888888776 66777888888888888888888888888777655555
Q ss_pred HHHHHHHHHHHHHcc
Q 002286 750 AQILLYLARTHYEAE 764 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g 764 (942)
......+...+...+
T Consensus 77 ~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 77 QKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcc
Confidence 555555555444433
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.84 E-value=1.7e-08 Score=82.59 Aligned_cols=80 Identities=29% Similarity=0.526 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
+.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3344444444444444444444444444444444 334444444454555555555555555554554444444444444
Q ss_pred H
Q 002286 242 L 242 (942)
Q Consensus 242 ~ 242 (942)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.84 E-value=2.2e-08 Score=81.96 Aligned_cols=85 Identities=22% Similarity=0.522 Sum_probs=66.0
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++ ..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Confidence 3466777788888888888888888888888888888888888888888888888888888888888877 666777777
Q ss_pred HHHHcC
Q 002286 206 CRYKLG 211 (942)
Q Consensus 206 ~~~~~g 211 (942)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776554
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=7.2e-08 Score=85.85 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (942)
+++++|+.+|+++.+..+.... +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 8999999999999998744443 999999999999999999999986 468999999999999 8999
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
++|+.+|+++.+. .++.+.+.||.+|.. .+++++|+.+|+++.+.. ++...++++
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999985 568999999999999 899999999999999884 555666554
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.5e-09 Score=91.72 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.+++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3444444445455555555555555544444444444444444444444444444444444444443
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.80 E-value=2.5e-07 Score=101.96 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=146.6
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 673 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~ 673 (942)
.+..+...+.+.|+.++|...|+++...+-.++..++..+... |........ ....+..++|.++|+++.... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~~---~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAATE---SSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCSS---SSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchhh---hhhcchHHHHHHHHHHHHHhCCCC
Confidence 3455567778888888888888888887766677777766655 433211000 001278999999999998876 34
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
|..+++.+...+.+.|++++|..+|.++.+..- ..+..+|..+...|.+.|+.++|.++|+.+.+. +-.++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 888999999999999999999999999988652 146788999999999999999999999999875 467789999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 754 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
..|..++.+.|+.++|.++++++....-......|++
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999999999887643333333443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=7.3e-09 Score=88.69 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhHHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 597 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 597 (942)
....++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred HhhhhhccccchHHHHHHHHHh
Q 002286 598 MLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.+|.++...|+++.|+..++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766644
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=1.7e-08 Score=84.14 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
+|+++.+++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56666777777777777777777777777777777777777777777777777777777777777666543
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.71 E-value=2.4e-08 Score=83.26 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHH--------
Confidence 45666666666666666666666666666666 66666666666666666666666666666666 332211
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 002286 211 GQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~ 229 (942)
+.+.+++..|++++..+|+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 3445555555555555444
No 204
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.70 E-value=1e-06 Score=97.03 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=146.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccc---------cchHHHHHHHHHhhccCCCCchhHH
Q 002286 562 YLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYAT 631 (942)
Q Consensus 562 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~ 631 (942)
+..+...+.+.|+.++|+.+|+++.... +.+..+|..+..++... +..+.|...|..+...+-.++..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4555566777888888888888877654 33455566555555433 4578899999999998877789999
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 710 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 710 (942)
..+... |... |++++|..+|+++.... +.+...++.+...|.+.|+.++|..+|..+.+..-
T Consensus 109 n~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~---- 171 (501)
T 4g26_A 109 TNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV---- 171 (501)
T ss_dssp HHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----
Confidence 999999 9998 99999999999998875 44788999999999999999999999999998763
Q ss_pred CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 711 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 711 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
..+...|..+..++.+.|+.++|.++++++-... ..++..++..+-..+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2477889999999999999999999999987753 45566666666555443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=4.3e-07 Score=80.77 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~ 182 (942)
++++++|+.+|.++.+.. ++.+. +|.+|...+.+++|+..|+++... .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44455 999999989999999999999876 578999999999988 88999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
.+|+++.+. .+ +...+.+|.+|.. .+++++|+.+|+++.+.. ++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999886 33 5678889999998 889999999999998863 455555444
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.68 E-value=3.7e-08 Score=82.10 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh-hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+.+|.+++..|++++|+..|++++..+|++ .. +++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 567888999999999999999999999998 66 88999999999999999999999999999998887643
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+. +.+++..|.++...+|+++
T Consensus 75 ~~---~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KM---VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HH---HHHHHHHHCCTTHHHHCCS
T ss_pred HH---HHHHHHHHHHHhccCcccc
Confidence 22 7778888887777766553
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.68 E-value=5.4e-07 Score=91.71 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=109.5
Q ss_pred HhhcCCCCcchH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHH---
Q 002286 120 ASRIDMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY----SDSLEFYKR--- 187 (942)
Q Consensus 120 a~~~~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----~~A~~~~~~--- 187 (942)
+....|.++.+| +.+|..++..++ +.+|+.+|+++++.+|+++.++..++.++.....+ ......+..
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334457766655 567888887765 48999999999999999999999888887532111 111111111
Q ss_pred ---HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 188 ---ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 188 ---~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
++..+|.+ +.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 12345666 677778888888889999999999999999974 7788899999999999 999999999999999
Q ss_pred CCCH
Q 002286 265 PYCA 268 (942)
Q Consensus 265 p~~~ 268 (942)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9776
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=2.8e-07 Score=93.75 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=110.3
Q ss_pred hHHHHHHHhccCChHHH--HHHHHHHHHcCCH---HHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhh
Q 002286 27 SDILDILKAEQAPLDLW--LIIAREYFKQGKV---EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101 (942)
Q Consensus 27 ~~~~~~l~~~~~~~~~~--~~~a~~y~~~g~~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 101 (942)
.+...+....|.++++| +..|..|+.++.. .+|+.+|++++..+|+. ..++..++.+|........
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~---------a~A~A~la~a~~~~~~~~~ 251 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---------TYARAEKALVDIVRHSQHP 251 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHhccCC
Confidence 33444445566666655 6778888887654 88999999999888743 3456666777663322211
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH
Q 002286 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A 181 (942)
...........|... ..++..+|.++.++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|
T Consensus 252 ~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 252 LDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp CCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 111111222333332 134566788888888888888888999999999999998886 467788888888889999999
Q ss_pred HHHHHHHHHhCCCC
Q 002286 182 LEFYKRALQVHPSC 195 (942)
Q Consensus 182 ~~~~~~~l~~~p~~ 195 (942)
+..|.+++.++|..
T Consensus 330 ~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 330 ADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHSCSH
T ss_pred HHHHHHHHhcCCCc
Confidence 99999999998877
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=6.7e-06 Score=79.83 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=91.3
Q ss_pred CCCcchhHHHHHHHHHhh-----cC------CHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHc-----CChhHHHHH
Q 002286 520 LPWNKVTVLFNLARLLEQ-----IH------DTVAASVLYRLILFKYQDY--VDAYLRLAAIAKAR-----NNLQLSIEL 581 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~-----~~~~~A~~~ 581 (942)
..|.++..++..|.+... .| ....|...++++++++|+. ..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456788888877766532 13 3578899999999999994 66999999999995 999999999
Q ss_pred HHHHHhhcCCC-hhHHHHhhhhhcc-ccchHHHHHHHHHhhccCCC
Q 002286 582 VNEALKVNGKY-PNALSMLGDLELK-NDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 582 ~~~~l~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 625 (942)
|++++.++|+. ..+++.+|..++. .|+++.|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 9999999999988 49999999999999998776
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.58 E-value=4.6e-07 Score=75.75 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhh
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 786 (942)
-++.-.+.+|..++..|+|..|+.+|+.+++..+.. ..+.++..||.++++.|+++.|+..+++++.+.|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356778999999999999999999999999987432 238899999999999999999999999999999999999
Q ss_pred HhhHHHHHHHH
Q 002286 787 RFDAGVAMQKF 797 (942)
Q Consensus 787 ~~~la~~~~~~ 797 (942)
..|++. +...
T Consensus 83 ~~n~~~-~~~~ 92 (104)
T 2v5f_A 83 NGNLKY-FEYI 92 (104)
T ss_dssp HHHHHH-HHHH
T ss_pred HhhHHH-HHHH
Confidence 999986 4443
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=4.5e-07 Score=98.93 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=68.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhhh
Q 002286 277 HFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYY 346 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~ 346 (942)
.+..+|+|++|+.++++++.. .+.+|....++.++|.+|..+|+|++|..++++++... +.+|.....+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566666666666666532 33445555566666666666666666666666665421 23444445555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l 403 (942)
+||.+|..+|++++|+.+|++++.+ .|++ .+...+++.++..++.+++|...|.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666655555543 2333 2233445555555555555555555443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=3.1e-07 Score=74.31 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCCCcchHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
+|.++..+..+|.+++..++ .++|...|+++++.+|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888776655 6888888888888888888888888888888888888888888888887774
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.52 E-value=9.7e-07 Score=96.26 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=99.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQA 412 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~ 412 (942)
+..+...|+|++|+..++++++. .|++ ..++.++|.+|..+|++++|..++++++.+ +|+....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34455678888888888888764 2333 457788888888888888888888888865 3455667
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+.++|.+| .+|++++|...|++++.+....-.+..+ ++...++.++..++.+.+|...|.++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8999999999999999888776333333 6678889999999999999999999866
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.52 E-value=1e-05 Score=78.50 Aligned_cols=193 Identities=13% Similarity=0.032 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------------------CChhHHHHHHHHHHhhcCCChhHHHHhhh
Q 002286 543 AASVLYRLILFKYQDYVDAYLRLAAIAKAR---------------------NNLQLSIELVNEALKVNGKYPNALSMLGD 601 (942)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 601 (942)
-.+.+++.++..+|++.......+..|..- .++..|..+|.++....-.-.... .-+.
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~-~~~~ 128 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA-YPGF 128 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh-CccH
Confidence 445778888889999966555555443321 123345555555543210000000 0000
Q ss_pred h-hccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 002286 602 L-ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAA 678 (942)
Q Consensus 602 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~ 678 (942)
+ -+..++ ...+..++......+..+++..|.+ +.......+..+. .-+....|...++++++++|+ +..++
T Consensus 129 ~~~~~~~~----~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg~~-Al~~l~~A~a~lerAleLDP~~~~GsA~ 202 (301)
T 3u64_A 129 TREVFSGD----EQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLGSA-LPDTVHAAVMMLERACDLWPSYQEGAVW 202 (301)
T ss_dssp HHHHTSSC----HHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTTSC-CHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHhcc----hhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCChH-HHHhHHHHHHHHHHHHHhCCCcccCHHH
Confidence 0 112222 1234444554444477777766666 5443222111110 126677888888888888888 66688
Q ss_pred HHHHHHHHhc-----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhCC
Q 002286 679 NGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 679 ~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 746 (942)
..+|.+|... |+.++|...|+++++.+|+ .++++++..|..++.. |+++.|...+++++...|.
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888774 7888888888888888762 2477777788777764 7788888888888776544
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.2e-06 Score=76.51 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhC-CCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
...+.+.|...+..+|.+..+.+.+|.++.+.+ ++++++.+++.+++.+ |....+.++.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345556666666666666667777777776666 5556777777777666 533356667777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAV 239 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~ 239 (942)
++++++.+|++..+....-.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHH
Confidence 77777777777666544433
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=1.6e-06 Score=70.11 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+|+++..+..+|.+++..++ .++|...+++++..+|++ +.+++.+|..++..|++++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888889999988876655 689999999999999998 7778888999999999999999999999888874
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=3.9e-06 Score=73.19 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcCChHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~g~~~~A 181 (942)
.+....+...|.+.+..+|.+..+.+..|.++...+ +.++++.+|+.+++.+ | .+.++++.+|..+++.|+|++|
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345567888888888889999999999999999998 6779999999999998 7 5689999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 002286 182 LEFYKRALQVHPSC 195 (942)
Q Consensus 182 ~~~~~~~l~~~p~~ 195 (942)
+.+++++++..|++
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999999998
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.15 E-value=1.6e-05 Score=66.26 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC------CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44566778888888888888888888877531 123567788888888888888888888888888888888766
Q ss_pred HHH
Q 002286 236 ALA 238 (942)
Q Consensus 236 ~l~ 238 (942)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.98 E-value=5.5e-05 Score=63.30 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhC-CCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
...+...|...+..++.+..+.+.+|+++.+..+... ++.+++.++..+ |.......+.+|..++++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666666666677777777777777665555 777777777665 433456677788888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~ 240 (942)
++.+++..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888877765544443
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.97 E-value=2.5e-05 Score=83.67 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=85.0
Q ss_pred HcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcC
Q 002286 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (942)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (942)
..|++++|+..+++++.... ......+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~-----------------------------------~~lg~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS-----------------------------------SVFEDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-----------------------------------TTBCTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh-----------------------------------CccChhchHHHHHHHHHHHHHHhhc
Confidence 56899999999999998421 1111256777889999999999999
Q ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHHH
Q 002286 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (942)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~ 598 (942)
++++|+.++++++.. +|+....+.++|.+|..+|++++|..++++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 4555778999999999999999999999999886 4777765443
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.95 E-value=5.6e-05 Score=63.22 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---HHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcccHHH
Q 002286 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQD 768 (942)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 768 (942)
.+...|.+....++ ..+++.+++||++...++... +|.+++..++.. .+ ..-..+|+||..+++.|+|.+
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 44455555555443 567888888888888777666 888888887752 01 236789999999999999999
Q ss_pred HHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 769 CKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 769 A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
|+++++.+++..|+|..+.--...+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998766544443
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.90 E-value=7.3e-05 Score=80.06 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=54.7
Q ss_pred cCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHH
Q 002286 355 LGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGE 418 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~ 418 (942)
.|+|++|+..+++++.+ .|++ ..++.++|.+|..+|++++|+.++++++.+ +|+....+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666666653 2333 345566666666677777777766666654 2344455666677
Q ss_pred HH-hcCCHhHHHHHHHHHHHHHHHc
Q 002286 419 LL-ISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
+| .+|++++|+..|++++.+....
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHH
Confidence 77 7777777777777777766554
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.87 E-value=0.0001 Score=79.17 Aligned_cols=106 Identities=5% Similarity=-0.089 Sum_probs=85.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
-+...|++++|+..+++++.... ......+|....++.++|.+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~-----------------------------------~~lg~~h~~~~~~~~~L~~~y~ 340 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNS-----------------------------------ERLPDINIYQLKVLDCAMDACI 340 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSS-----------------------------------CCCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhcc-----------------------------------CcCCccchHHHHHHHHHHHHHH
Confidence 35578999999999999997421 1111256667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHH
Q 002286 537 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALS 597 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~ 597 (942)
.+|++++|+.++++++.. +|+....++++|.+|..+|++++|..++++++.+ .|++|.+..
T Consensus 341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999963 4455778999999999999999999999999876 477776543
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.86 E-value=9.7e-05 Score=79.34 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=69.9
Q ss_pred HHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFID 415 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~ 415 (942)
+...|++++|+..++++++. .|++ ..++.++|.+|..+|++++|+.++++++.+ +|+....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566777777777777653 2333 346677777777777777777777777754 2444556777
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHF 459 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~ 459 (942)
+|.+| .+|++++|+.+|++++.+....-.+..+ .++.+++.+..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777 7788888888888887777665333333 34455555443
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.64 E-value=0.00023 Score=62.32 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=76.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC---CC
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PS 194 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~ 194 (942)
...+++.....++..|.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++... |.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777888888877777765543222 2366777888888888888888888776542 11
Q ss_pred C---------------------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 195 C---------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 195 ~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
. ...+++.++.|+..+|++.+|+..++.+- ..-..+.....||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 1 12578889999999999999998877532 1224677777777665
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.55 E-value=0.0018 Score=55.21 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=32.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..++.++|+..|+.++......+..|...|....++|+ ...|...+.+++...|...
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcH
Confidence 33555566666666555555555555555555555555 5566666666665555444
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.54 E-value=0.00097 Score=56.83 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=93.3
Q ss_pred cCCCCcchHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEV------EQASSAFKIVLEADRDN--------VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
..|++++.|.......-..|+. ++-++.|++++..-|.. +..|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4799999999999999999999 99999999999887743 3456666654 5669999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
+...... +.+|+..|..-.+.|+...|+..+.+++...|...+.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 9987776 8899999999999999999999999999999986554
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.45 E-value=0.0041 Score=52.82 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=67.8
Q ss_pred CchhHHHHHHHHHHHhcCH---HHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 712 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+.+.+++||++....+. .++|.+++..++. .+. .-..+|+||..+++.|+|.+|+++.+.+++..|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5789999999999988654 4799999999886 333 378999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 002286 788 FDAGVA 793 (942)
Q Consensus 788 ~~la~~ 793 (942)
--...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.39 E-value=0.0012 Score=55.20 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHHhcCH---HHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 712 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+.+.+++||++.+..+. .++|.+++..++. .+. .-..+++||.++++.|+|++|+++.+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4689999999999988654 5799999999886 332 378999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 002286 788 FDAGVA 793 (942)
Q Consensus 788 ~~la~~ 793 (942)
--...|
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.34 E-value=0.39 Score=55.41 Aligned_cols=412 Identities=11% Similarity=0.019 Sum_probs=190.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHH--HHHHHHHHHHHHHHHcchhhhhhh-hhHHHHHHHHHHHHHH
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY--ERIAILNALGVYYTYLGKIETKQR-EKEEHFILATQYYNKA 120 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~~~~~-~~~~~~~~A~~~~~~a 120 (942)
-.+-...++.|.+.+|+.++-++...+.-..+.+... +....+..+..+.+.....-.... -+..-+.-+..+|.+.
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~ 228 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNM 228 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhC
Confidence 3444556788999999999988876554333332100 000112222222222222111111 1344555666666653
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh--HH-HHHH------HHHHHHh
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SD-SLEF------YKRALQV 191 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~--~~-A~~~------~~~~l~~ 191 (942)
+ ..-|+....+++..++.+.+.+.|.+.+. .++...-+.+|..+.+.+.- -. -+.. +.+...+
T Consensus 229 ----~--~~dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 229 ----P--NCDYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp ----S--SCCHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ----C--chhHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 1 22577888999999999999999999874 45666667777777664431 11 1111 1122222
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHH-HHHHHHHHHhhCCCCHHHH--HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGK-ARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
-.+. ....+.+-..+ ..+..+- -.+.++..+ ++.+.... ...+..+.+.|-. -+.-+......+-...+..
T Consensus 301 Lsg~-~~~~Lyl~FL~-~~n~~d~~~l~~~K~~l--d~r~s~~~~A~~f~Naf~naG~~--~D~~l~~~~~Wl~k~~~~~ 374 (963)
T 4ady_A 301 LSGL-PTCDYYNTFLL-NNKNIDIGLLNKSKSSL--DGKFSLFHTAVSVANGFMHAGTT--DNSFIKANLPWLGKAQNWA 374 (963)
T ss_dssp TTSH-HHHHHHHHHHH-HHCCCCHHHHHHHHHHS--CTTSHHHHHHHHHHHHHHTTTTC--CCHHHHHCHHHHHHCCTHH
T ss_pred hCCC-ChHHHHHHHHH-hccccchhhHHHHHhhh--cchhhHHHHHHHHHHHHHhCCCC--cchhhhcchhhhhccchHH
Confidence 1111 00111111111 1111111 112223222 23332211 1222333333321 0111111222333333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-------CC
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-------PH 339 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~ 339 (942)
..-...+.-....|+.++++..+...+... ........+.+.+|.++...+ .+++.++...+..... ..
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHH
Confidence 333333333445677777777777665421 111223455666666665555 3577777766642110 00
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
....+-+++|.++.-.++ +++...+..++..+.... .+-..+|.++.-.|+.+-....+..+.+...+...-...+|
T Consensus 453 ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 111344566666655554 456666666665332211 24456677777777766555555555543333322223333
Q ss_pred HHH-hcCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 418 ELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..+ ..|+.+.+-...+..... .++ ........+|..|...|+...-...+..+..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhhhCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 333 455555554444433221 000 0012334456666677775444445555544
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.30 E-value=0.0053 Score=52.11 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+.++.+.+.+|+++....+ ..+++.+++..+...|....+..+.+|..++++|+|++|+.+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3456677777777776654 3467777777777777666677777888888888888888888888888888777655
Q ss_pred HHHH
Q 002286 236 ALAV 239 (942)
Q Consensus 236 ~l~~ 239 (942)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.27 E-value=0.0026 Score=53.23 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.+.+.+.+|+++.+..+ ...++.+++..+..+|....+.++.+|..++++|+|++|+.+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56777777777777654 456788888888877766677788888888888888888888888888888888776655
Q ss_pred HHHH
Q 002286 238 AVMD 241 (942)
Q Consensus 238 ~~~~ 241 (942)
..+.
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.24 E-value=0.00088 Score=58.68 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHhcCCchHHHHHHHHHHHHhcC---CC-------------
Q 002286 655 THLEKAKELYTRVIVQHTSNLY---------AANGAGVVLAEKGQFDVSKDLFTQVQEAASG---SV------------- 709 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~---------a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~------------- 709 (942)
+.|+.|+-....++....+++. ++..+|.++...|+|..|...|++++..... ..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 7888898888887765433332 6778899999999999999999998654321 00
Q ss_pred ----CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002286 710 ----FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (942)
Q Consensus 710 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~ 760 (942)
.+.+.++.+.++.||..+|++.+|+..++.+-.+ ...+.+...||+.|
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANLY 165 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHHC
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHHh
Confidence 1112356677777777777777777775443222 23466777777655
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.06 E-value=0.064 Score=55.74 Aligned_cols=295 Identities=11% Similarity=0.073 Sum_probs=171.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHH-cCChhHHHHHHHHHHhhcCCChhHH-
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-----AYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL- 596 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~- 596 (942)
...+.+.+|.+|...|+.++-..++.......+..+. ....+...+.. .+..+.-++.+..+++-..+.-..|
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999988888776544333322 22233333333 3445555566666655433232222
Q ss_pred -----HHhhhhhccccchHHHHHHHHHhhccCCCC-ch----hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHH
Q 002286 597 -----SMLGDLELKNDDWVKAKETFRAASDATDGK-DS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (942)
Q Consensus 597 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (942)
..+|.+|+..|++.+|...+.++...-... +. ..+.....+ |... +++.++...|.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~ 164 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHH
Confidence 378999999999999999998887733221 11 122233444 5555 888888888888
Q ss_pred HHhcC---CCCHH----HHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 002286 667 VIVQH---TSNLY----AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (942)
Q Consensus 667 ~l~~~---p~~~~----a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 738 (942)
+.... +.++. ....-|.++. ..++|..|...|-.+.+.+.....+....+...++-|-...++..+--....
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~ 244 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 244 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 76542 12222 2334488888 8999999999999998777533222222344445555555555322212111
Q ss_pred -HHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhh-----cCCCHHHH
Q 002286 739 -NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK-----TRRTADEV 812 (942)
Q Consensus 739 -~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~-----~~~~~~~~ 812 (942)
.....+ ..++...+..+..+ +..|++.+....+...-.....|+.+.-|+..+++......+.+ ..-+++.+
T Consensus 245 ~~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 245 GKLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp SHHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred ccccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 111222 23334445555555 44667777666665544444557777666666666655544332 33445555
Q ss_pred HHHHH-HHHHHHHHHHHHhhCC
Q 002286 813 RSTVA-ELENAVRVFSHLSAAS 833 (942)
Q Consensus 813 ~~a~~-~l~~a~~~~~~l~~~~ 833 (942)
-..++ ..+++...+.++..++
T Consensus 323 A~~l~ls~~evE~~L~~lI~dg 344 (394)
T 3txn_A 323 AESIQLPMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHCcCHHHHHHHHHHHHHCC
Confidence 54421 3456677777776654
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.91 E-value=0.34 Score=50.38 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.+|..|.++|+.++...++......-. .++ +..-..+...|...+....... +..++--...++.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~a 89 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS--SIS--KAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG--GSC--HHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--Hhc--hHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHHH
Confidence 3789999999999999999999998754321 111 1122334445555554443222 23333333333333
Q ss_pred hhcCCCCcchHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 121 SRIDMHEPSTWV------GKGQLLLAKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 121 ~~~~p~~~~~~~------~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
- +.-..|+ .+|..|+..|+|.+|...+.++.+.-.. + .+.+.....++...|++.++...|.++
T Consensus 90 ~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 90 K----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp H----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3 2223342 6899999999999999999998864221 1 456778888999999999999999988
Q ss_pred HHhC---CCC---chhhHhhHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 002286 189 LQVH---PSC---PGAIRLGIGLCRY-KLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 189 l~~~---p~~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 227 (942)
.... +.+ .+.+...-|..+. ..++|..|...|-.+++..
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 7653 111 2445666788888 8999999999999987543
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.69 E-value=0.27 Score=42.57 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--h------------
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I------------ 371 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~------------ 371 (942)
+.-..++.+++-.|.|..++-++. ..+...+.+..+.+|...++|..|+.++++++. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 445556666666777766665552 234445555666777777777777777777762 1
Q ss_pred ---CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 244444 55678888899999999999999888888765444
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.68 E-value=1.4 Score=50.91 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.2
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 245 (942)
|..+..|..++++.+.+.+.|.+++. .++...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56788999999999999999999874 456666666776665543
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.52 E-value=0.026 Score=65.03 Aligned_cols=114 Identities=9% Similarity=-0.082 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
....++.+...|++.|+.++|..+|..+.+..... ...+...|..+...|++.|+.++|.++|+++... +-.+|..++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 44568889999999999999999998876431000 0146788999999999999999999999998775 367888999
Q ss_pred HHHHHHHHHcccH-HHHHHHHHHHHHhCCCChhhHhh
Q 002286 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPSNYTLRFD 789 (942)
Q Consensus 754 ~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 789 (942)
..+..++++.|+. ++|.+.|+++....-....+.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 9999999999985 78889999988875444444444
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.36 E-value=0.87 Score=50.76 Aligned_cols=144 Identities=8% Similarity=-0.066 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.-|...++.|++..+..+...+.. .|.. ..+.+..+..+... .....+...
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l~~-~pL~-------------~yl~y~~l~~~l~~-----------~~~~ev~~F 61 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKD-YPLY-------------PYLEYRQITDDLMN-----------QPAVTVTNF 61 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTT-STTH-------------HHHHHHHHHHTGGG-----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCcH-------------HHHHHHHHHhCccc-----------CCHHHHHHH
Confidence 3467788889999999999998776532 3311 11222222222111 011234445
Q ss_pred hhcCCCCcchHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 121 SRIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~---~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
+...|+.|..-..+... +...+++..-+.++.. .|.+...-...+......|+-.+|......+....... +
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p 136 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-P 136 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-C
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-c
Confidence 56678877665554433 3446677766664443 37777777777777888899888888777776655444 2
Q ss_pred hhHhhHHHHHHHcCCHH
Q 002286 198 AIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~ 214 (942)
...-.+-..+...|...
T Consensus 137 ~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQD 153 (618)
T ss_dssp THHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 32333444444444433
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.75 Score=52.21 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQA 169 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~~a 169 (942)
+.|+..+++....+|... .++..+.+... ..+--+|+..+.+.++. .+.+ ...+...+
T Consensus 266 ~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 468888888888777543 23333322221 12345566666666532 2222 23455667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (942)
..+..+|+|+-|+.+.++++...|.. -..|+.++.||..+|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 77788899999999999999999988 777888999999999999998777654
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.30 E-value=0.054 Score=46.74 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
-|..+...+.++.+++-.|.|.+|+-.+. .-+.+.+.+..+.|+...++|..|+..++.++.-.-+..+++-..+
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 35666788889999999999999887664 3345788888999999999999999999999943221111110000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
- ..-.+|.+.+. +..+|.+....|+ .++|+..+...+..+|-.+.+
T Consensus 104 ~------------------~ffvd~~DkEfFy~l~a~lltq~g~---r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 104 Q------------------EMFVDPGDEEFFESLLGDLCTLSGY---REEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp H------------------TTSCCTTCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHHH
T ss_pred c------------------eeeeccchHHHHHHHHHHHHHHhcC---HHHhhhHhhhhcCCccccchH
Confidence 0 01134555544 3345566666666 666666666666666655533
No 242
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.67 E-value=0.043 Score=63.31 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002286 655 THLEKAKELYTRV 667 (942)
Q Consensus 655 ~~~~~A~~~~~~~ 667 (942)
|+.++|.++|+++
T Consensus 179 G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 179 GAFKELVYVLFMV 191 (1134)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.1 Score=55.81 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH----
Q 002286 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (942)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 750 (942)
..+...+|..|...|+++.|.+.|.++.+...++. ...++++....++...+++..+...+.++-......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999875432 457889999999999999999999999998876655553
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
....+.|.++...++|.+|...|..++.-........+
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 34556678888899999999999888877665433333
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.072 Score=60.41 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
.+...+..+...|+++-|+.+.++++...|.....|+.++.+|...|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 56667888999999999999999999999999999999999999999999999776654
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.31 E-value=8.3 Score=42.95 Aligned_cols=212 Identities=9% Similarity=-0.048 Sum_probs=119.7
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHh
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 421 (942)
...+.......+.+.|...+.......+-+.. ....++.-....+...++...+.+.....+++.......+..+.
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHH
Confidence 33445555666889999999887654433322 22233333334453557777777766554444333333334447
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.|++..|...+..+.... .......+-+|..+...|+.++|..+|..+......-+ ....
T Consensus 298 ~~d~~~a~~~~~~l~~~~-----~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg-------------~lAa-- 357 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYP-------------MVAA-- 357 (618)
T ss_dssp HTCHHHHHHHHHHSCTTG-----GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHH-------------HHHH--
T ss_pred CCCHHHHHHHHHHccccc-----cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHH-------------HHHH--
Confidence 799999999887653311 12467788899999999999999999999876311000 0000
Q ss_pred hhhhhhhhhhccCCCCCCCCCc---chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
..... .............. ........+..+...|....|...+..++...+ ......++.+....|.+..+
T Consensus 358 -~~Lg~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 358 -QRIGE--EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp -HHTTC--CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHH
T ss_pred -HHcCC--CCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHH
Confidence 00000 00000000000000 111234556677788888888888777665422 34455667777778887777
Q ss_pred HHHH
Q 002286 579 IELV 582 (942)
Q Consensus 579 ~~~~ 582 (942)
+...
T Consensus 433 v~~~ 436 (618)
T 1qsa_A 433 VQAT 436 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.28 E-value=3.6 Score=48.47 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 135 a~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
.......|++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ ......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344566788888866 4411 11 01222455566677777777776552 2 22222 234567888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.|.+..+ ..++...|..+|..++..++ ++.|..+|.++
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHc
Confidence 88887643 33567788888888888888 88888777754
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.60 E-value=2.5 Score=45.22 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC----cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID--PR----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP- 447 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~- 447 (942)
......|+.+|...|++.+|...+..+..-. .. -...+.....++ ..+|+..|...+.++.........+..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3455677888888888888888887765321 11 145666677777 888999998888887554333222211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 448 -IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
...+...|.++...++|.+|-.+|..+...
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256677788999999999999999998874
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.41 E-value=2.4 Score=50.07 Aligned_cols=75 Identities=21% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
..++..+...|.++.|+...+... .. .......|+++.|.+..+. .++...|..+|..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHH
Confidence 455556666677666665442111 11 2344567777777776432 3456777778888888
Q ss_pred cCCHHHHHHHHHHH
Q 002286 389 LGQIEKAQELLRKA 402 (942)
Q Consensus 389 ~g~~~~A~~~~~~~ 402 (942)
.|+++.|..+|.++
T Consensus 694 ~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 694 RFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc
Confidence 88888887777765
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.31 E-value=1.5 Score=42.11 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=26.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
++.|+.++|+......++.+|.+ ...+..+...+.-.|+++.|...++.+.+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34444444444444444444444 444444444444444444444444444444444
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.14 E-value=0.48 Score=45.44 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.+.+++|+......++.+|.|......+...++-.|++++|...++.+.+++|.....-..+-.+ -.|...=.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R~ 82 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQARK 82 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999764332111110 01111111
Q ss_pred HHHHh--CC---CCchh--hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 187 RALQV--HP---SCPGA--IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 187 ~~l~~--~p---~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.++.- .| ..++. ..+.-+......|+.++|...-..+++.-|..
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22221 12 22222 12334555666799999999999999887653
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.57 Score=50.04 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---DNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
..+++.+..+.+-......-..++..+|..++..|++++|.++|.++..... .-...++....++...+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444555444432222333456889999999999999999999999876532 2367888899999999999999999
Q ss_pred HHHHHHhCCCC-----chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 185 YKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 185 ~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
+.++....... ........|..++..++|..|...|-.++...
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99987653221 12234456777778889999998888877654
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.42 Score=50.93 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHhcCCchHHHH----------HHHHHHHHh-cCCCCCC
Q 002286 655 THLEKAKELYTRVIV-----------QHTSNLYAANGAGVVLAEKGQFDVSKD----------LFTQVQEAA-SGSVFVQ 712 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~-----------~~p~~~~a~~~la~~~~~~g~~~~A~~----------~~~~~~~~~-p~~~~~~ 712 (942)
+++++|.++-...+. +|+-+.-.|+.++.++...|+...... .+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 778887777655441 123334455555666666676655322 222222222 1111113
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
...++..+-+.|...+.|+.|..+..++. ||.+ ++ ...++++|+++.-.++|.+|.+.+..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35567777899999999999999988874 5543 22 56678899999999999999999999999998764
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.29 E-value=2.2 Score=38.16 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (942)
..|+++.|.+..+.+ ++...|..+|......|+++-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444443332 2344444444444444444444444443
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=14 Score=39.34 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---CCchhhhhcHHHHHHHcCChHHHHHHHHHHHH---hCCCc--
Q 002286 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE---IYPDN-- 375 (942)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~-- 375 (942)
.......++.++...|++.+|...+.......... ......+.....++...+++..|...+.++.. ..+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 34556778888888888888888888776432211 12234556667777777888888777777632 12222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 376 --CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 376 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
...+...|.++...++|.+|..+|..++.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23455667777777777777777776654
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.87 E-value=6 Score=35.39 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
.+..|+++.|.+..+.. ++...|..+|......|+++-|..+|+++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34556666666655543 34556666666666666666666666553
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.26 E-value=13 Score=37.22 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh----------------hhh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK----------------QRE 105 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~----------------~~~ 105 (942)
.+-+++.=|.++++|++|+.++-.+...-...--.+ .-..+-..+..+|...+....+ ...
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~---sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~ 113 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGG---SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV 113 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH
Confidence 567778889999999999998876532211000001 1122223344555554322110 112
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+..-.++|+.+-.+.-...-.+|..+..+|..+...|++.+|...|- +..+ +.+..+..+-.-+...+
T Consensus 114 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~~--------- 181 (336)
T 3lpz_A 114 RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQD--------- 181 (336)
T ss_dssp HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHTS---------
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHhc---------
Confidence 33344444444444222222455666666666666666666665552 1111 11122211111111111
Q ss_pred HHHHHhCCCCchhhHh-hHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHHH
Q 002286 186 KRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVMD 241 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~~-~~~l~~~~ 241 (942)
.|.. .+.+. .....|..+++...|...+...++ .+| ..+.. +..+..+-
T Consensus 182 ------~~~e-~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt 254 (336)
T 3lpz_A 182 ------ESHT-APLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254 (336)
T ss_dssp ------CGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred ------CCcc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence 1222 23232 334456678888888776655443 222 22221 22333334
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~ 281 (942)
+..+....+..-...|...++.+| .....+..+|..|+..
T Consensus 255 ~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 255 VQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 445554556666677777777777 6677777777777654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.16 E-value=5 Score=41.99 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA-LTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
..|......|+.+.|...+.+++.....++ ..... ...+-.+ ...++.. ...+...++..+..
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 344455567899999999999997653221 11110 0111111 1222221 12355667888889
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHH-cCCCCCHHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPIEVLN 452 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 452 (942)
.|++.+++..+..++..+|-+..++..+..++ ..|+..+|+..|+++...+.. .+..+.+.+..
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999 999999999999999887654 35555554443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.99 E-value=2.2 Score=44.72 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
.|......|+.+.|...+..++......+.. ... ...+-.+ ...++... ..+...++..+...|+
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC
Confidence 3444556688888888898888764322100 000 0111111 01111110 1122334455555666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.+|+..+..++..+|-+..++..+..++...|+ ..+|+..|+++
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~ 231 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 6666666666666666666666666666666665 55555555444
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.91 E-value=20 Score=43.69 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEKAGLYYMAS 331 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (942)
..+..+..++...+.++.+..+...++......+.. ...|..+-..+...|+|++|...+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 445555666666677777777776666554333221 224555566666666666666655443
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.68 E-value=10 Score=46.38 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------HhC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL--------------------QVH 192 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------------------~~~ 192 (942)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|+++- ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444555555554433 223445555555666666666666666666665431 011
Q ss_pred C--CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH----HHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 193 p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
+ ...+..|+.+...+.+.|.++.++..-..|++..+. +.. .|..+-..++..|+ |++|...+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~ 962 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALM 962 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHH
Confidence 1 111334455555666666666666666666655432 221 24444455555555 555544443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.89 E-value=23 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGS 67 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~ 67 (942)
..+-+++.=|.+++++++|+.++..+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888999999999987654
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.15 E-value=2.9 Score=45.01 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+..+|.+......+..|..+|.++..+.|+. ...++.+|.+....|+.-+|+-+|.+++......+.+..++..+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3444555555555555555555555555555 44555555555555555555555555554444444444444433
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.09 E-value=2.9 Score=44.69 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.+++.+.+.|...+.|+.|..+..+..-... .+......++.+|+++...++|.+|..++..++.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555566666555555531100 0111133344455555555555555555555554
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=86.15 E-value=2.9 Score=45.10 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=57.9
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
+..+|.+......+..|..+|.++....|++...++.+|.+....|+.-.|+-+|-+++......+.+..++..++
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 4556777777777778888888888888888888888888888888888888887777776666677777776665
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.38 E-value=0.00019 Score=74.12 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHH---------HHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~---------~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
|.+++-+.+++..+.+...+......||.+|.+- +.++-.+.++. ++... .....|-.+..+|.
T Consensus 243 G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac------E~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 243 GYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA------EQAHLWAELVFLYD 315 (624)
T ss_dssp CCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH------TTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH------HHHhhHHHHHHHHh
Confidence 4555555555555554444555555555555532 22222222221 11111 23445666666666
Q ss_pred HhcCHHHHHH
Q 002286 726 AQGNFALAMK 735 (942)
Q Consensus 726 ~~g~~~~A~~ 735 (942)
.-.+|+.|+.
T Consensus 316 ~ydE~DnA~l 325 (624)
T 3lvg_A 316 KYEEYDNAII 325 (624)
T ss_dssp HHTCHHHHHH
T ss_pred cchhHHHHHH
Confidence 6677766653
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.31 E-value=0.00028 Score=72.94 Aligned_cols=227 Identities=16% Similarity=0.135 Sum_probs=138.0
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
.-+.+.+|..+|.++...++..+|++.|-+ .+++..+.....+....|.+++-+.++.-+.+. -..+.+-..+.
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi 123 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELI 123 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHH
Confidence 345778999999999999999999887754 344455667777888899999999988877654 45566666777
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.+|.+.++..+-.+ .+... +..-.-..|+- ++.. |.|+.|.-+|..+ .-+..
T Consensus 124 ~ayAk~~rL~elEe----fl~~~---N~A~iq~VGDr-cf~e------------~lYeAAKilys~i--------sN~ak 175 (624)
T 3lvg_A 124 FALAKTNRLAELEE----FINGP---NNAHIQQVGDR-CYDE------------KMYDAAKLLYNNV--------SNFGR 175 (624)
T ss_dssp HHHHTSCSSSTTTS----TTSCC---SSSCTHHHHHH-HHHS------------CCSTTSSTTGGGS--------CCCTT
T ss_pred HHHHhhCcHHHHHH----HHcCC---CcccHHHHHHH-HHHc------------cCHHHHHHHHHhC--------ccHHH
Confidence 78888877654222 22221 11122345666 6655 6666666655422 22445
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002286 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~ 760 (942)
|+.++.+.|+|..|.+.-+++ +++.+|-....++...+++.-|..+--..+-. +. -+-.+...|
T Consensus 176 LAstLV~L~~yq~AVdaArKA----------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad---eL~elv~~Y 239 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD---ELEELINYY 239 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTC----------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS---CCSGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH---HHHHHHHHH
Confidence 677777788877777665554 45566666666666666666665554433331 11 111233344
Q ss_pred HHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 761 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 761 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
...|.+++-+..++.++.+.--+-.+---||.+|.|.
T Consensus 240 E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 240 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 5556666655566665555444444444455555544
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.73 E-value=16 Score=30.74 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHH-HHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 717 WINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 717 ~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
++.+| .++..+|+-++=-+.+...+.. .+..|.++..+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 44444 5666778887777776665553 55668999999999999999999999888887754
No 268
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=71.12 E-value=16 Score=24.73 Aligned_cols=13 Identities=54% Similarity=0.588 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 002286 888 EARRKAEEQKKYL 900 (942)
Q Consensus 888 ~~~~~~~~~~~~~ 900 (942)
++.++++++++..
T Consensus 19 eAlrq~Ee~Rk~K 31 (63)
T 3rk3_E 19 EALRQAEEERKAK 31 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.24 E-value=97 Score=31.00 Aligned_cols=27 Identities=11% Similarity=-0.061 Sum_probs=23.6
Q ss_pred CcchhHHHHHHHHHhhcCCHHHHHHHH
Q 002286 522 WNKVTVLFNLARLLEQIHDTVAASVLY 548 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (942)
-.++..+..+|..|.+.+++.+|...|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 457889999999999999999988877
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.08 E-value=60 Score=27.38 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHH--HHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL--NALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
-++-|....-.|..++..+++.+...+.+-..|..--.+-+.+- ..+...+-..|+.-. -.+-++...-+..|-+.
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--is~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--LDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--GGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcC--cHhhhcHHHHHHHHHHh
Confidence 46667888889999999999998776554222221100000000 001111112222210 11223333444444443
Q ss_pred hhcCCCCcchHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 121 SRIDMHEPSTWVGKG-QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
-.. .-++.+| ..+..+|+-++-.+.+...+...|-++..++.+|.+|.+.|+..+|-+++.++-+.
T Consensus 88 n~~-----se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 88 NTL-----NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TCC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cch-----HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 211 1233333 44555666666666666655556666777777777777777777777777666554
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.23 E-value=1.2e+02 Score=30.13 Aligned_cols=128 Identities=15% Similarity=0.063 Sum_probs=74.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002286 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393 (942)
Q Consensus 314 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 393 (942)
.....|+|=+|.+.|+... .=|.+.+++++|++.+.... ..+.+.|+..
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~-----------------~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~ 70 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIA-----------------NRYVRSKSYEHAIELISQGA--------------LSFLKAKQGG 70 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHH-----------------HHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHH
T ss_pred HHhhccChHHHHHHHHHHH-----------------HHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcc
Confidence 3455566666666665444 33556677777777655442 2333444444
Q ss_pred HHHHHHHHHHHh-----CcCcHHHHHHHHHHH-hcC-CHhHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCH
Q 002286 394 KAQELLRKAAKI-----DPRDAQAFIDLGELL-ISS-DTGAALDAFKTARTLLKKAGE--EVPIEVLNNIGVIHFEKGEF 464 (942)
Q Consensus 394 ~A~~~~~~~l~~-----~p~~~~~~~~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 464 (942)
.|.+...-+++. .|-+......+..++ ... .-..-..+.++++....+.+. ..+++++..+|..++..|++
T Consensus 71 sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 71 SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 444332222211 233344444555555 222 112235667777877766533 35689999999999999999
Q ss_pred HHHHHHHH
Q 002286 465 ESAHQSFK 472 (942)
Q Consensus 465 ~~A~~~~~ 472 (942)
.+|..+|-
T Consensus 151 ~~A~~H~i 158 (312)
T 2wpv_A 151 YEAERYFM 158 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
No 272
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=51.41 E-value=1.1e+02 Score=30.40 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=56.1
Q ss_pred HHHHHHHHhcC---CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 002286 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 755 (942)
Q Consensus 679 ~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 755 (942)
..|-+++...| +|.-|+..+-..-+..|....+. +..+ |.+||..- +.+..+....-+.+
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~-~l~L------------~~~AI~sa----~~yY~n~HvYPYty 301 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP-AEEL------------FKEAITVA----KREYSDHHIYPYTY 301 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC-HHHH------------HHHHHHHH----HHHSTTCCSHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC-HHHH------------HHHHHHHH----HHHhccCCccchhh
Confidence 56677777766 67788888888888887543322 1111 23444432 23334556667788
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHh
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
+|-.+++.+++.+|++.+-.+-..
T Consensus 302 lgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 302 LGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHHHHHH
Confidence 899999999999999988776654
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.25 E-value=31 Score=41.02 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 403 (942)
+...+...|.++-+. .++...|.++..-+.+|.+|...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 556667777776543 3556678888888999999999999999999998865
No 274
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.12 E-value=1.5e+02 Score=27.06 Aligned_cols=127 Identities=12% Similarity=0.005 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh---cCCCcchhhhhhhHH--HHHHHHHHHHHHHHHcchhhh---hhhhhHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEE---GSSPEIDEYYADVRY--ERIAILNALGVYYTYLGKIET---KQREKEEHFIL 112 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~---~~~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~~---~~~~~~~~~~~ 112 (942)
++++.-+..+|+.|++.++.++.+- ++.. +. ..... ..+.+-..|.. ...|+.-. +...+--=++.
T Consensus 17 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall~~-~l---~~~~~~~k~iri~QfLsR--I~eG~~LD~~Fd~~~~lTPLES 90 (235)
T 3bu8_A 17 KFYFHEALRAFRGSRYGDFRQIRDIMQALLVR-PL---GKEHTVSRLLRVMQCLSR--IEEGENLDCSFDMEAELTPLES 90 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CC---CCCHHHHHHHHHHHHHHH--HHTTTCTTEECSSSTTCCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhC-cc---cccccchhHHHHHHHHHH--HHcCCCCCcccCCCCCCChHHH
Confidence 4678889999999999999876553 3311 11 11111 12222222221 22333210 00011112457
Q ss_pred HHHHHHHHhhcCCCCcch--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 113 ATQYYNKASRIDMHEPST--------WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~--------~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 173 (942)
|+..++.+-+..|-.... ......+++..|.|++|.+.+++....+|.+-.....+..+-.
T Consensus 91 Al~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 91 AINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 888888876665432111 1234466788899999999999988876666555555555433
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.18 E-value=61 Score=38.46 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=29.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~ 702 (942)
..+..-|.++..-+.+|.++...|++++|..+|+++-
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3556667788888888888888888888888888764
No 276
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.12 E-value=1.3e+02 Score=30.70 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHhcC---CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 002286 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 755 (942)
Q Consensus 679 ~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 755 (942)
..|-+++...| +|.-|+..+-..-+..|....+. +.. -|.+||..- +.+..+....-+.+
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~-~~~------------L~~~AI~sa----~~~Y~n~HvYPYtY 323 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD-PLT------------LYHKGIASA----KTYYRDEHIYPYMY 323 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC-HHH------------HHHHHHHHH----HHHSTTCCSHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC-HHH------------HHHHHHHHH----HHHhccCCccceee
Confidence 45667777665 67778888888888776543321 111 122333332 23334555666778
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHh
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
+|-.+++.+++.+|+..+-.+-..
T Consensus 324 lgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 324 LAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhhcchHHHHHHHHHHHHHH
Confidence 888888888888888887666554
No 277
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=48.06 E-value=79 Score=32.52 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=38.8
Q ss_pred hhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 002286 784 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (942)
Q Consensus 784 ~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~ 832 (942)
..+.||+|.++...+.......+.+.+.++.+..-+..|--+|..|.+.
T Consensus 114 a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~ 162 (376)
T 3r9m_A 114 ISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKES 162 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888777776554444566778999999999999999999764
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.53 E-value=81 Score=27.54 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH---HHH---HHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VP---ALL---GQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~---~~~---~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
-+..|..++..|+|=+|-++++.+-...+.. -. .++ ..|..+.+.|+...|..++.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667888888999999999999998776544 12 222 2333556678888888888888764
No 279
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=47.21 E-value=23 Score=37.51 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcCCC--------C--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCCCC--Cc
Q 002286 655 THLEKAKELYTRVIVQHTS--------N--------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFV--QM 713 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~--------~--------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~--~~ 713 (942)
...+.+.....++....-+ + .+..+.+-.+|.+.|+..-+..++..+....+ -+.+| ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 4566666666666554110 0 12345556677778888888887766655432 01111 12
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhh-hCC
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYY 746 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 746 (942)
....|.+|.+++..++|.+|.+.+..|+.. .|.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 234556677777777777777777777776 554
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=46.48 E-value=1.1e+02 Score=24.17 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (942)
....++|..+-+= +...+....+-+.....+.++|+|++|..+.+ |.+.+++--.++.|-++.|-.+++...+
T Consensus 20 ~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~------~~c~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGN------KLAYPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHT------TSCCGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcC------CCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 3467777766554 44455544455666778899999999987764 3334565666899999999999888777
Q ss_pred HHH
Q 002286 221 QRA 223 (942)
Q Consensus 221 ~~a 223 (942)
.+.
T Consensus 93 ~~l 95 (116)
T 2p58_C 93 NRL 95 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 281
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.16 E-value=28 Score=22.43 Aligned_cols=16 Identities=50% Similarity=0.544 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002286 888 EARRKAEEQKKYLLEK 903 (942)
Q Consensus 888 ~~~~~~~~~~~~~~~~ 903 (942)
++.++++|+++....+
T Consensus 16 eAlreaEe~Rk~Kh~k 31 (49)
T 1kil_E 16 EALRQAEEERKAKYAK 31 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.90 E-value=24 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
..+|..+...|++++|+..|-+|+.-+|.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3456666777777777777777777665553
No 283
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=45.32 E-value=30 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=10.7
Q ss_pred HhcCHHHHHHHHHHHHhh
Q 002286 726 AQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (942)
..|++.+|+.+|..++..
T Consensus 31 ~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 446666666666665553
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.85 E-value=1e+02 Score=34.35 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=45.4
Q ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh
Q 002286 148 SSAFKIVL-EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (942)
Q Consensus 148 ~~~~~~~l-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (942)
+.-+++.+ +..|....+ ..-.++.-.|.|+.|+.++-+. + ....+++.++..++ |-... -...+..
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~---~--~vdAVH~AIaL~~~--gLL~~----~~~lls~ 347 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF---S--EMDAVHLAIGLASL--KLFKI----DSSTRLT 347 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT---C--HHHHHHHHHHHHHT--TC--------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc---C--chhHHHHHHHHHHc--CCccC----CCccccc
Confidence 44454444 334443333 3556677889999999988754 2 22456666666553 33332 2233334
Q ss_pred CCCCHHH-HHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 227 DPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 227 ~p~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+|+.+.. +..+...|.+.=...+..+|+.+|--+
T Consensus 348 ~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 348 KKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp -------CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred CCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 4432211 222223333322222377888777554
No 285
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.70 E-value=19 Score=33.26 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHcccHH
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---AQILLYLARTHYEAEQWQ 767 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~l~~~~~~~g~~~ 767 (942)
....+.+|.+++..++|.+|.+.+..|+..+|.... ..++.+|.-+-.-.|+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344566777777777777777777777777654322 334444444445556543
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.80 E-value=32 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=11.5
Q ss_pred HhcCHHHHHHHHHHHHhh
Q 002286 726 AQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (942)
..|+|.+|+.+|..++..
T Consensus 23 ~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 446777777776666653
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.79 E-value=1.2e+02 Score=23.81 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (942)
....++|..+-+= +...+....+-+.....+.++|+|++|..+.+ |.+.+++--.++.|-++.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~------~~c~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAH------GNPWPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGT------TCCCGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcC------CCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 3466777766554 44455544455666778899999999987653 4444666666899999999999988877
Q ss_pred HHH
Q 002286 221 QRA 223 (942)
Q Consensus 221 ~~a 223 (942)
.+.
T Consensus 92 ~~l 94 (115)
T 2uwj_G 92 AGL 94 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.47 E-value=31 Score=26.21 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=5.5
Q ss_pred HcCCHHHHHHHHH
Q 002286 140 AKGEVEQASSAFK 152 (942)
Q Consensus 140 ~~g~~~~A~~~~~ 152 (942)
..|++++|+.+|.
T Consensus 31 ~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 31 KEGNAEEAITNYK 43 (83)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 4444444444443
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.51 E-value=1e+02 Score=28.10 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 689 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
++..++.++|.-+....-+. ..+..|...|..+...|++.+|.++|+..++..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGT---KLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34668888888887776543 566777778888888888888888888888863
No 290
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=41.44 E-value=2.3e+02 Score=26.59 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
-+..+|.+.-+.++|++.+.+.+++...+|.-...-+..+..+|-
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 345566666677777777777777777666554555555555554
No 291
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=41.29 E-value=2.4e+02 Score=26.87 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhHHHHHHHc-CCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKL-GQLGKARQAFQRALQLDP--ENVEALVALAV 239 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 239 (942)
+..+|.+.-+.++|++.+.+.+++...+ +.....-+..+..+|-.. |....+.+.+...-+... .+..-...+-.
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~~i~~ 90 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIRE 90 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q ss_pred HHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC
Q 002286 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (942)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 319 (942)
.-..... ++..-...++..+-..+.-...-.++.-+|.++.. +.+..++.+.....
T Consensus 91 yr~kie~---------------EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKG---------DYyRYlaE~~~g~~ 146 (260)
T 1o9d_A 91 YRSKIEN---------------ELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKG---------DYHRYLAEFKTGAE 146 (260)
T ss_dssp HHHHHHH---------------HHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHH---------HHHHHHHHHCCSHH
T ss_pred HHHHHHH---------------HHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhc---------cHHHHHHHhcCchH
Q ss_pred CHH---HHHHHHHHHHH-----hcCCCCCchhhhhcHHHHHHH-cCChHHHHHHHHHHHH
Q 002286 320 DYE---KAGLYYMASVK-----EINKPHEFIFPYYGLGQVQLK-LGDFRSALTNFEKVLE 370 (942)
Q Consensus 320 ~~~---~A~~~~~~a~~-----~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~ 370 (942)
+.. .|...|+.+.. ..|.+|-.....++.+..|+. .++.++|.....+++.
T Consensus 147 r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 147 RKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 292
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=40.47 E-value=74 Score=23.36 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
+.+|..+...|++++|...|-+++...|+-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 456777777777777777777777776643
No 293
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.17 E-value=35 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=7.3
Q ss_pred hcCChHHHHHHHHHHH
Q 002286 174 NRGRYSDSLEFYKRAL 189 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l 189 (942)
..|+|.+|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4444444444444433
No 294
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=39.66 E-value=1.5e+02 Score=29.49 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
..|+-++-.+....+ .-+...+-.++....+. ..+.-+-......|-|+....|... .|.-|+-.+-..
T Consensus 196 ~SWLYl~G~pv~C~R-~MeVAa~VsaiNPsi~~--~tDs~El~~LQq~LLWLLyD~GhL~--------rYPmALgnLgDL 264 (472)
T 3re2_A 196 CSWLYLNGNAVHCTR-HMEVASIISSINPNINH--TTDSIQLSQLQQELLWLLYDMGHIK--------TYPMAIANLGDL 264 (472)
T ss_dssp CCGGGGGGCCEECCH-HHHHHHHHHTCCCEEET--TEECHHHHHHHHHHHHHHHHTTTTT--------TCHHHHHHHHHH
T ss_pred cceEEECCceEeecc-hhHHHHHHHhcCCcccc--ccchHHHHHHHHHHHHHHHhccchh--------hCchhhcchhhH
Confidence 457766655555443 33344444455444321 1112244556678888888888876 355666666666
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
-+++|..... .++.+|.+++.. ...+...+..+|..+++.+++.+|+..+..+-.
T Consensus 265 Ee~~pt~gr~---------------~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 265 EEISPTPGRP---------------PAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHSCCTTSC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 6666542110 144455554432 234456666777777777777777777766543
No 295
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=39.32 E-value=2.6e+02 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=12.6
Q ss_pred HHHHHHHH-cccHHHHHHHHHHHHH
Q 002286 755 YLARTHYE-AEQWQDCKKSLLRAIH 778 (942)
Q Consensus 755 ~l~~~~~~-~g~~~~A~~~~~~al~ 778 (942)
+.+..|+. .|+.++|....++++.
T Consensus 202 NfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 202 NFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334443 5666666665555554
No 296
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.56 E-value=1.6e+02 Score=29.92 Aligned_cols=123 Identities=11% Similarity=0.175 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
.|+-+.-.+....+ .-+...+-.++....+. ..+.-+-..+...|-|++...|... .|.-|+-.+-..-
T Consensus 219 SWLYl~G~~v~C~R-~MeVAa~VsaiNPsi~~--~tds~el~~LQq~LLWlLyd~GhL~--------rYPmALgnLgDLE 287 (550)
T 3u84_A 219 SWLYLKGSYMRCDR-KMEVAFMVCAINPSIDL--HTDSLELLQLQQKLLWLLYDLGHLE--------RYPMALGNLADLE 287 (550)
T ss_dssp CGGGGGGCCEECCH-HHHHHHHHHTCCCBSSS--SCBCHHHHHHHHHHHHHHHHTTTTT--------TCHHHHHHHHHHH
T ss_pred ceEEecCceEeech-HhHHHHHHHhcCCcccc--cccHHHHHHHHHHHHHHHHhccchh--------hCchhhcchhhHh
Confidence 46655555544443 23333333444443322 1112245566678888888888876 3556776666666
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+..|..... .++.+|.+++.. ...++..+..+|-.+++.+++.+|+..+..+-.
T Consensus 288 e~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 288 ELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 666542111 044445444432 234566677777778888888888877766544
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.01 E-value=2.4e+02 Score=25.63 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCC-Cc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHH
Q 002286 696 DLFTQVQEAASGSVFV-QM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (942)
Q Consensus 696 ~~~~~~~~~~p~~~~~-~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 771 (942)
.++++++....++..- ++ ..+|...+..+ ..++..++..+|.-+....-....+..+...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788888766433211 22 23444444443 2344789999999998875444457788888888999999999999
Q ss_pred HHHHHHHhCC
Q 002286 772 SLLRAIHLAP 781 (942)
Q Consensus 772 ~~~~al~~~p 781 (942)
+|+..+...-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 298
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=36.74 E-value=1.5e+02 Score=30.31 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=36.6
Q ss_pred hhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 002286 784 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (942)
Q Consensus 784 ~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 833 (942)
..+.||+|.++...+.. ..+.+.+.++.+..-+..|--+|..|.+.-
T Consensus 117 a~VLfNiaal~s~~a~~---~~r~~~~glK~A~~~fq~AAG~f~~l~~~~ 163 (363)
T 3rau_A 117 ACILYNLGALHSMLGAM---DKRVSEEGMKVSCTHFQCAAGAFAYLREHF 163 (363)
T ss_dssp HHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888877666653 344567789999999999999999998864
No 299
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.49 E-value=6.2e+02 Score=34.48 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002286 812 VRSTVAELENAVRVFSHLSA 831 (942)
Q Consensus 812 ~~~a~~~l~~a~~~~~~l~~ 831 (942)
+...+..|.+|......|..
T Consensus 1922 l~~GL~KL~et~~~V~~l~~ 1941 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQV 1941 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555543
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.27 E-value=2.4e+02 Score=24.71 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
+.+.++|..+....-....+..+...|..+...|++.+|.++|+..+....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 347778888777643344477777778888889999999999999888764
No 301
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.75 E-value=5.1e+02 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
....+|..++..... .-.++|+..|...+.
T Consensus 311 ~~~s~~~a~a~~e~~-~av~~A~~~Y~~~M~ 340 (592)
T 1f5n_A 311 CMENAVLALAQIENS-AAVQKAIAHYEQQMG 340 (592)
T ss_dssp BHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 445555555554443 235667777776665
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.21 E-value=1.8e+02 Score=25.39 Aligned_cols=63 Identities=8% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHH-H--HHHHHHcccHHHHHHHHHHHHHh
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLY-L--ARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~-l--~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
-+.-|..++..|+|-+|-+.++.+....+.+++ ...+.. + |......|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 355677778889999999999999988654422 222333 3 34455689999999999999874
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.89 E-value=1.6e+02 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
-+..|..++..|++.+|+..|..++..
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 366789999999999999999887643
No 304
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.32 E-value=1.5e+02 Score=31.29 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHH-hc
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEA-AS 706 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~p 706 (942)
.+.+|.++...++|.+|...+..+... .|
T Consensus 223 ~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 223 RYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 356788888888888888888888887 76
No 305
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=31.09 E-value=1.9e+02 Score=29.77 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=33.7
Q ss_pred hhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 002286 784 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (942)
Q Consensus 784 ~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~ 832 (942)
..+.||+|.++...+. ...+.+.+.++.+..-+..|--+|..|.+.
T Consensus 142 a~VLfNlgal~s~~A~---~~~r~~~eglK~A~~~fq~AAG~f~~l~~~ 187 (380)
T 3c3r_A 142 SCVLFNCAALASQIAA---EQNLDNDEGLKIAAKHYQFASGAFLHIKET 187 (380)
T ss_dssp HHHHHHHHHHHHHHHH---TSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777666655 233445567899999999999999999775
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.54 E-value=67 Score=25.02 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=11.6
Q ss_pred HhcCHHHHHHHHHHHHhh
Q 002286 726 AQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (942)
..|+|++|+.+|..++..
T Consensus 27 ~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 27 AESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 446777777776666653
No 307
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=29.91 E-value=48 Score=24.76 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
-...+|+=|...|+|+.|+.+|+.++..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3566788888889999999999888875
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.39 E-value=2.5e+02 Score=26.06 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCHHHHH---HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAAN---GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 737 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~---~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 737 (942)
..+++++++...++....+ .+-..+.-....+.+.++|.-+....-+. ..+..|...|..+...|++.+|..+|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQ---ESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCST---TBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcch---hHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHhhhCCC
Q 002286 738 QNCLRKFYYN 747 (942)
Q Consensus 738 ~~al~~~~~~ 747 (942)
+..++..-.|
T Consensus 174 ~~Gi~~~A~P 183 (223)
T 4aez_C 174 QKGKRMKAKP 183 (223)
T ss_dssp HHHHHHTCBS
T ss_pred HHHHHcCCcc
No 309
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.19 E-value=54 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
..+|..+...|+++.|+.+|-+|+.-++.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 456777888888888888888888877654
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.79 E-value=85 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
..+...+..+...|.|++||++.+++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444556667777888888888766654
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.52 E-value=1.7e+02 Score=22.75 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HH--HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PA--LLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~--~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
+..|..++..|+|=+|-++++.+-...|... .. .+..|..+...|+. |...+.+++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 4567778888888888888888887775421 12 22333344556777 77777777663
No 312
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.86 E-value=49 Score=24.68 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLE 156 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~ 156 (942)
+.+|+-+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567777777777777777777764
No 313
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=27.28 E-value=1.1e+02 Score=28.11 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
..+.+|..++..++|.+|...|..++...|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 45566777777777777777777777666644
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.25 E-value=75 Score=26.01 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=12.3
Q ss_pred HhcCHHHHHHHHHHHHhh
Q 002286 726 AQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (942)
..|+|++|+.+|..++..
T Consensus 30 ~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 447777777777766663
No 315
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.11 E-value=1.7e+02 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhh
Q 002286 722 HVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~ 743 (942)
-++.+.|.|++|.+.+++.+..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3445556666666665555543
No 316
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.10 E-value=84 Score=23.88 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=12.4
Q ss_pred HhcCHHHHHHHHHHHHhh
Q 002286 726 AQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (942)
..|++++|+.+|..++..
T Consensus 25 ~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 457777777777776664
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.58 E-value=77 Score=24.67 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=7.1
Q ss_pred hcCChHHHHHHHHHH
Q 002286 174 NRGRYSDSLEFYKRA 188 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~ 188 (942)
..|+|++|+.+|..+
T Consensus 27 ~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 27 AESRYQQALVCYQEG 41 (93)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 345555555444443
No 318
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=26.56 E-value=2.5e+02 Score=29.98 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 002286 816 VAELENAVRVFSHLSA 831 (942)
Q Consensus 816 ~~~l~~a~~~~~~l~~ 831 (942)
...+..+...|..+..
T Consensus 348 ~~~~~~~~~~~~~l~~ 363 (483)
T 2j1d_G 348 EDLLAEAKDLFTKAVK 363 (483)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555544
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.42 E-value=83 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVL 155 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l 155 (942)
+-.++..++..|+|++|+.+..++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456778888888888888777664
No 320
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.39 E-value=3.1e+02 Score=28.11 Aligned_cols=86 Identities=9% Similarity=0.124 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--- 157 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 157 (942)
+-..+...|-|+..-.|... .|.-|+-.+-..-++.|.... ..++.+|.+++..
T Consensus 240 el~~lQq~LLWlLyd~Ghl~--------~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~ 296 (489)
T 4gq4_A 240 ELLQLQQKLLWLLYDLGHLE--------RYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKT 296 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTT--------TCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchh--------hcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHH
Confidence 45666777888888888765 355677666666666664422 1223444444432
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 158 --DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 158 --~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
...+...+..+|-.+++.++|.+|+..+..+-
T Consensus 297 ~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 297 YYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 22345555666666666666666666666553
No 321
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.51 E-value=5.6e+02 Score=26.25 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=57.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----------------cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 384 HIYVQLGQIEKAQELLRKAAKID-----------------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
.+.....+.++|+..+.++...- .....+...++..+ ..|+.+.|...++++.......+..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34445566777777766553211 01234455667777 7888888888888887777665433
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 446 VP---IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 446 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.+ ...+...+..+...+++..+...+-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 24455556667778888877666666554
No 322
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=24.98 E-value=4.9e+02 Score=26.02 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhh
Q 002286 819 LENAVRVFSHLSA 831 (942)
Q Consensus 819 l~~a~~~~~~l~~ 831 (942)
+..+...|..+..
T Consensus 268 ~~~~~~~~~~l~~ 280 (340)
T 1v9d_A 268 HSNMETLYKELGD 280 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555543
No 323
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.96 E-value=3.9e+02 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
-+..|..++..|++.+|+..|..++..
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 467799999999999999999987644
No 324
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.82 E-value=4.5e+02 Score=24.84 Aligned_cols=63 Identities=17% Similarity=0.024 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh-cCChHHHHHHHHHHHHh
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFN-RGRYSDSLEFYKRALQV 191 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~ 191 (942)
.-++.+|.+.-+.++|++...+...+...++.- ..-...+..+|-+ .|....+...+..+.+.
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqk 69 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQK 69 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 356778899999999999999999998877643 3444444444433 25556666666544433
No 325
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.90 E-value=4.5e+02 Score=24.58 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNR-GRYSDSLEFYKR 187 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~-g~~~~A~~~~~~ 187 (942)
.-++.+|.+.-+.++|++...+..++...+|. +..-...+..+|-+. |....+...+..
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiiss 66 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 66 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45667888888999999999999999887664 234444444444332 444555555544
No 326
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.31 E-value=8e+02 Score=27.27 Aligned_cols=76 Identities=14% Similarity=0.017 Sum_probs=36.8
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-------
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE------- 418 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~------- 418 (942)
....++.-.|+|+.|+.++-+. ...+ ++..++..+ .|-... -...+..+|+.+ ..+++.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~--~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~ 365 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLAS--LKLFKI----DSSTRLTKKPKR--DIRFANILANYTK 365 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHH--TTC-----------------------CHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHH--cCCccC----CCcccccCCCcc--cccHHHHHHHHHH
Confidence 4678888999999999988754 2222 344444443 443332 122333333322 222222
Q ss_pred HHhcCCHhHHHHHHHHH
Q 002286 419 LLISSDTGAALDAFKTA 435 (942)
Q Consensus 419 ~~~~~~~~~A~~~~~~a 435 (942)
.+...|...|+.+|--.
T Consensus 366 ~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 366 SFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTTCHHHHHHHHHGG
T ss_pred HhhcCCHHHHHHHHHHH
Confidence 22567888888877644
No 327
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.14 E-value=3.6e+02 Score=23.19 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 002286 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774 (942)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 774 (942)
..++++++....++..-.+-.-++.+---|...-.- +..+|.-+....-....+..+...|..+...|++.+|..+|+
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~d--p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD--LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC--HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCC--HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHhC
Q 002286 775 RAIHLA 780 (942)
Q Consensus 775 ~al~~~ 780 (942)
..++..
T Consensus 126 ~Gi~~~ 131 (152)
T 4a1g_A 126 RGIQNQ 131 (152)
T ss_dssp HHHHTT
T ss_pred HHHHcC
No 328
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.02 E-value=1.8e+02 Score=31.90 Aligned_cols=32 Identities=6% Similarity=-0.076 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (942)
|.-..++..++..-.. .-..+|+..|.+..+.
T Consensus 310 P~~~s~~~a~a~~e~~-~av~~A~~~Y~~~M~~ 341 (592)
T 1f5n_A 310 PCMENAVLALAQIENS-AAVQKAIAHYEQQMGQ 341 (592)
T ss_dssp CBHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4433344444433322 2245666666665543
No 329
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.84 E-value=1.1e+02 Score=23.79 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=14.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPD 374 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (942)
+|..+...|+++.|+.+|-+++...|.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 455555555555555555555554443
No 330
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.35 E-value=93 Score=25.48 Aligned_cols=16 Identities=31% Similarity=0.848 Sum_probs=7.9
Q ss_pred hcCChHHHHHHHHHHH
Q 002286 174 NRGRYSDSLEFYKRAL 189 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l 189 (942)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3455555555554443
No 331
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.19 E-value=1.3e+02 Score=23.47 Aligned_cols=58 Identities=10% Similarity=-0.040 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHH--HHHHHHHHcccHHHHHHHHHHHHH
Q 002286 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL--YLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~--~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
..|..++..|+|-+|-+.++.+....+.+.. ...+. ..|......|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3456667778888888888888887422111 22222 333344456777 8888888776
No 332
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.07 E-value=4.2e+02 Score=23.15 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
+.+.++|..+....-+. ..+..|...|..+...|++.+|.++|+..++..
T Consensus 77 ~~p~~if~~L~~~~IG~---~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGV---SLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56888999998876543 677888899999999999999999999999974
No 333
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.05 E-value=2.8e+02 Score=21.05 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+..|.-+++.++|.+|+.+|+++..
T Consensus 57 i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 57 IAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHc
Confidence 3334444455555555555555443
No 334
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.65 E-value=1.8e+02 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.....-|.-+++.++|.+|...|+++...
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34444555666777777777777777765
Done!