Query 002287
Match_columns 942
No_of_seqs 373 out of 1369
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 20:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3E-140 7E-145 1293.6 76.1 720 195-941 27-809 (900)
2 KOG1041 Translation initiation 100.0 2E-127 5E-132 1168.4 66.7 718 199-941 43-784 (876)
3 KOG1042 Germ-line stem cell di 100.0 1E-111 2E-116 933.2 48.9 658 206-940 87-778 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 5.9E-78 1.3E-82 693.7 33.9 356 567-941 1-375 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 4.9E-74 1.1E-78 667.6 38.2 378 535-941 2-399 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1E-65 2.2E-70 587.2 34.3 323 579-941 1-344 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2E-51 4.3E-56 455.9 17.1 234 698-941 1-250 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 1.5E-32 3.3E-37 316.0 16.9 213 694-938 109-350 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 3.3E-23 7.2E-28 201.8 10.2 133 409-546 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 6.9E-21 1.5E-25 180.0 13.2 113 409-522 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 1E-20 2.2E-25 178.5 11.7 112 408-522 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 4.1E-19 8.8E-24 167.1 9.3 106 409-523 2-115 (117)
13 PF12764 Gly-rich_Ago1: Glycin 99.6 1.3E-15 2.9E-20 132.4 8.4 100 86-193 2-103 (104)
14 cd02844 PAZ_CAF_like PAZ domai 99.5 1.3E-14 2.7E-19 139.6 6.3 84 436-523 27-133 (135)
15 PF08699 DUF1785: Domain of un 99.4 8.5E-14 1.8E-18 110.7 3.3 52 356-408 1-52 (52)
16 KOG0921 Dosage compensation co 99.1 1.2E-10 2.6E-15 136.0 10.9 8 3-10 1167-1174(1282)
17 cd02843 PAZ_dicer_like PAZ dom 98.8 1.1E-08 2.4E-13 94.9 5.7 67 438-507 39-106 (122)
18 COG1431 Argonaute homolog, imp 97.7 0.00031 6.8E-09 80.2 12.6 221 639-894 356-585 (685)
19 PF12764 Gly-rich_Ago1: Glycin 96.6 0.0023 4.9E-08 56.9 4.2 49 125-173 40-92 (104)
20 KOG1596 Fibrillarin and relate 96.0 0.025 5.3E-07 58.8 8.1 7 232-238 184-190 (317)
21 COG4371 Predicted membrane pro 86.3 1.4 2.9E-05 46.1 5.7 17 165-181 155-171 (334)
22 KOG4307 RNA binding protein RB 83.9 8.5 0.00018 46.0 11.2 12 215-226 869-880 (944)
23 KOG3915 Transcription regulato 80.8 5.3 0.00012 45.3 7.8 13 224-236 181-193 (641)
24 smart00157 PRP Major prion pro 72.2 28 0.00061 35.1 9.3 11 227-237 158-168 (217)
25 PF05642 Sporozoite_P67: Sporo 66.7 1.3E+02 0.0027 35.8 14.3 20 530-549 587-606 (727)
26 KOG4307 RNA binding protein RB 63.0 60 0.0013 39.2 11.1 6 229-234 898-903 (944)
27 KOG3915 Transcription regulato 59.4 42 0.0009 38.5 8.7 12 511-522 371-382 (641)
28 KOG1924 RhoA GTPase effector D 58.7 37 0.00079 41.6 8.5 15 212-226 635-649 (1102)
29 PF05642 Sporozoite_P67: Sporo 56.6 4.1E+02 0.0089 31.8 16.1 20 743-762 694-713 (727)
30 PLN03138 Protein TOC75; Provis 50.8 11 0.00023 47.0 2.7 12 804-815 642-653 (796)
31 PLN03138 Protein TOC75; Provis 45.2 16 0.00034 45.6 2.9 19 510-528 364-383 (796)
32 KOG3875 Peroxisomal biogenesis 38.1 83 0.0018 34.6 6.6 29 500-528 308-336 (362)
33 cd06559 Endonuclease_V Endonuc 36.2 1.7E+02 0.0037 30.7 8.6 88 773-890 23-110 (208)
34 PF04094 DUF390: Protein of un 33.6 1.9E+02 0.0041 35.5 9.2 12 871-882 795-806 (828)
35 PF08459 UvrC_HhH_N: UvrC Heli 33.1 1.5E+02 0.0033 29.6 7.2 99 774-888 10-120 (155)
36 PF05387 Chorion_3: Chorion fa 30.5 2E+02 0.0043 30.5 7.6 50 174-231 133-183 (277)
37 PF07555 NAGidase: beta-N-acet 29.0 5.2E+02 0.011 28.9 11.3 105 646-755 18-147 (306)
38 PF04094 DUF390: Protein of un 28.5 2.7E+02 0.0058 34.3 9.2 7 409-415 370-376 (828)
39 KOG1924 RhoA GTPase effector D 26.7 2.2E+02 0.0048 35.3 8.2 11 342-352 734-744 (1102)
40 PTZ00449 104 kDa microneme/rho 26.7 1.1E+03 0.023 28.2 13.2 13 134-146 578-590 (943)
41 PF00763 THF_DHG_CYH: Tetrahyd 26.3 2.3E+02 0.005 26.7 7.0 58 693-752 27-85 (117)
42 KOG0037 Ca2+-binding protein, 23.3 1.7E+02 0.0036 30.8 5.6 15 166-180 55-69 (221)
43 KOG2792 Putative cytochrome C 22.9 2.7E+02 0.0058 30.2 7.1 52 609-660 120-178 (280)
44 PRK11617 endonuclease V; Provi 22.3 3.9E+02 0.0083 28.5 8.3 87 774-890 28-114 (224)
45 PF11705 RNA_pol_3_Rpc31: DNA- 22.0 1.3E+02 0.0028 32.1 4.9 6 360-365 211-216 (233)
46 KOG0037 Ca2+-binding protein, 21.9 1.3E+02 0.0029 31.5 4.6 10 213-222 95-104 (221)
47 PF12683 DUF3798: Protein of u 21.4 1.7E+02 0.0037 31.8 5.5 102 625-733 132-235 (275)
48 PRK14180 bifunctional 5,10-met 20.6 3.5E+02 0.0077 29.8 7.9 56 694-751 30-86 (282)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.2e-140 Score=1293.65 Aligned_cols=720 Identities=37% Similarity=0.623 Sum_probs=614.8
Q ss_pred CCCCcCCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeEEEecC----CCCchhhHHHHHHHHHHHHHhhccCCccc
Q 002287 195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITP----EVTSRGVNRAVMEQLVKLYRESHLGKRLP 268 (942)
Q Consensus 195 ~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~--~~~iy~YdV~i~p----e~~~k~~~r~i~~~l~~~~~~~~~g~~~~ 268 (942)
..+...+|+||++||.|++|+|.||||+|+++ +..||||||+|.| ++++++++++|+.++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 33444778999999999999999999999975 6789999999996 4556778899999998776543 444467
Q ss_pred eEeccceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeechhhHHHH
Q 002287 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGLF 327 (942)
Q Consensus 269 ~yDG~~~Lys~~~L~~~~~~f~v~l~~~~~~------------~~---------~~~~~~~~~V~Ik~~~~~~l~~l~~~ 327 (942)
+|||+++|||..+|+++..+|.|++.++++. .. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998766788877542111 00 01246889999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHhcCCCCc-ccccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeee
Q 002287 328 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI 406 (942)
Q Consensus 328 l~g~~~~~~~~~lq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~ 406 (942)
|.+...+.+.++||+||||||+.++.. ++.+||+||+++.....+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999888888999999999999987654 8999999998754445678999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCC--------C
Q 002287 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G 478 (942)
Q Consensus 407 ~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~--------G 478 (942)
+++||+|+|.++.+... ....++.++.++|+|++|.++|+ +++|+|++|++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765322 11234567999999999999998 589999999999999999986421 3
Q ss_pred cEeeHHHHHHHHcCCcccCC-CCceEEecCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHH
Q 002287 479 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT 557 (942)
Q Consensus 479 ~~iSV~~Yf~~~Y~i~L~~p-~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~ 557 (942)
++|||+|||+++|||+|+|| +||||.+++.++++|||||||.|+++|+++++|++.|+++||++|+.+|++|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 58999999999999999996 99999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhhhccCeEecCcceEeeeEEeCCCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCCcch
Q 002287 558 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ 637 (942)
Q Consensus 558 ~~~~~~~~~~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~ 637 (942)
++.++++.+++|++|||+|+++|++|+|||||||+|.|+++. .+.|++|+||+++++|++++.+++|+||+|+++
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 998888889999999999999999999999999999998742 245789999999999999999999999988654
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCc--hhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCC-CCcchhhh
Q 002287 638 DSIARGFCFELAQMCYISGMAFNPEPVIPPISARP--EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL 714 (942)
Q Consensus 638 ~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~--~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~-~~~~Y~~I 714 (942)
..+++|++.|.+.|+.+||.+..++.+.....+. ...+..++.+++++.++++ ..++|||||||++ +.++|+.|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I 570 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW 570 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence 2578999999999999999998643321111100 1112334555544444332 4699999999974 67899999
Q ss_pred hhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCC
Q 002287 715 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794 (942)
Q Consensus 715 K~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~p 794 (942)
|++||+++||+||||... +.++||+.|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|
T Consensus 571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p 647 (900)
T PLN03202 571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP 647 (900)
T ss_pred HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence 999999999999999654 34789999999999999999999886554455788888899999999999998865579
Q ss_pred cEEEEEEecCCCCccceeEEEEeccCchhHHHHHH----------------HHh-cCCC--Cc---EEEcCCCCchhHHH
Q 002287 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF----------------KTW-QDPG--TP---YIFPDGVSEGQFYQ 852 (942)
Q Consensus 795 SiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~----------------~~~-~~~~--~P---IiYRDGVsEgQf~~ 852 (942)
||||||||+||+++++|++.+++|.+++|+|++|. ..| ++.+ .| ||||||||||||.+
T Consensus 648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~ 727 (900)
T PLN03202 648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ 727 (900)
T ss_pred ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHH
Confidence 99999999998889999999999999999988642 123 2222 25 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCc
Q 002287 853 VLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 932 (942)
Q Consensus 853 Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~ 932 (942)
|+++|+++|++||+++.++|+|+||||||+||||||||+.+ +.+||+||||||++||||.+||||||||+++
T Consensus 728 Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~ 799 (900)
T PLN03202 728 VLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAHAGM 799 (900)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEeccccc
Confidence 99999999999999998899999999999999999999863 3689999999999999999999999999999
Q ss_pred cccccc-ccc
Q 002287 933 QVSYFL-RFC 941 (942)
Q Consensus 933 qGTsrp-~y~ 941 (942)
|||||| .|+
T Consensus 800 qGTarPthY~ 809 (900)
T PLN03202 800 IGTTRPTHYH 809 (900)
T ss_pred ccCCcCceEE
Confidence 999995 886
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-127 Score=1168.42 Aligned_cols=718 Identities=39% Similarity=0.627 Sum_probs=615.7
Q ss_pred cCCCCCCCCCCCCCcceEEeeeEEeecC--CCc-eeeeEEEecCCCCchhhHH-HHHHHHHHHHHhhccCCccceEeccc
Q 002287 199 VRFPLRPGRGSTGTRCIVKANHFFAELP--DKD-LHQYDVTITPEVTSRGVNR-AVMEQLVKLYRESHLGKRLPAYDGRK 274 (942)
Q Consensus 199 ~~~p~RP~~Gt~G~~v~l~tN~f~v~~~--~~~-iy~YdV~i~pe~~~k~~~r-~i~~~l~~~~~~~~~g~~~~~yDG~~ 274 (942)
...+.||+.++.|+++.|.||||.+++. +.. ++||+|++.++..++.+++ .+++.+++......+....++|||++
T Consensus 43 ~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~ 122 (876)
T KOG1041|consen 43 RFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQK 122 (876)
T ss_pred cccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCc
Confidence 4556799999999999999999997764 555 9999999999998887775 66666665444333455566799999
Q ss_pred eEEecCCCCCCcce--EEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhcCCC
Q 002287 275 SLYTAGPLPFLSKE--FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPT 352 (942)
Q Consensus 275 ~Lys~~~L~~~~~~--f~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~~~~ 352 (942)
+|||..+|+..... |.+.+..+ ...|+++|++++.+.+..+..++.+.....+.+++|+|++++++.++
T Consensus 123 ~lyt~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s 193 (876)
T KOG1041|consen 123 TLYTKLELPEGVVTLDFDVISPKE---------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIAT 193 (876)
T ss_pred eeEeccccccccceEEEEecCCCC---------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhc
Confidence 99997777632233 33333222 11199999999988888888888888778899999999999999998
Q ss_pred Cc-ccccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeeccccHHHHHHHHhcCCCCCCCCChH
Q 002287 353 TR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDA 431 (942)
Q Consensus 353 ~~-~~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~~~~l~~~ 431 (942)
.. +...+++||.........++.|.|+|.||++|+|+++++++||+|+++++||++.+|+++++.+++... +.+.+.
T Consensus 194 ~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~~ 271 (876)
T KOG1041|consen 194 SQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHKD 271 (876)
T ss_pred hhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--cccccc
Confidence 77 999999999863333455899999999999999999999999999999999999999999999987653 233333
Q ss_pred HHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCC-CcEeeHHHHHHHHcCCcccCCCCceEEecCCCC
Q 002287 432 DRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQR 510 (942)
Q Consensus 432 ~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~-G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~~k 510 (942)
....++++||||+|.++| ++.+|.|+|.+++..++.+++|++.+. +.++||+|||+++||++|+||+||||+++..++
T Consensus 272 ~~~~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~ 350 (876)
T KOG1041|consen 272 RPLDIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKR 350 (876)
T ss_pred cchhHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCC
Confidence 334499999999999999 466899999999999999999997665 588999999999999999999999999999999
Q ss_pred CccccccceeecCCccccc-CCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCChhhhccCeEecCcceEeeeEEeC
Q 002287 511 PNYLPMEVCKIVEGQRYSK-RLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILP 589 (942)
Q Consensus 511 ~~ylP~Elc~i~~gQ~~~~-kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~arvLp 589 (942)
.+|||||||.|++|||+.+ +|++.|+++|++.++..|++|++.|.++++...+..|++|++|||+|.++|+.|+||+||
T Consensus 351 ~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~ 430 (876)
T KOG1041|consen 351 ENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLP 430 (876)
T ss_pred CcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccC
Confidence 9999999999999999998 999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCC
Q 002287 590 APWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPIS 669 (942)
Q Consensus 590 ~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~ 669 (942)
||.|+|+++ .....|..|.|++++++|++|+.+..|+|++|....+... +.|+++|++.|+..||.|.. |. ...
T Consensus 431 ~P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~ 504 (876)
T KOG1041|consen 431 PPKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWA 504 (876)
T ss_pred CceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccC
Confidence 999999985 3345678999999999999999999999999987655555 89999999999999999976 55 221
Q ss_pred CCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHH
Q 002287 670 ARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKI 749 (942)
Q Consensus 670 ~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKi 749 (942)
...+.++..++ .....++....++||+||+++++.++|+.||+++|..+||+||||+.+++.|..+||++||+|||
T Consensus 505 ~~~~~~~~~~~----~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKi 580 (876)
T KOG1041|consen 505 PTEESLEDMIT----EKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKI 580 (876)
T ss_pred cccchhHHHHH----HHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHH
Confidence 11223333332 22222211257999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCC--CCcEEEEEEecCCCCccceeEEEEeccCchhHHHH
Q 002287 750 NVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQD 827 (942)
Q Consensus 750 N~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~--~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~ 827 (942)
|+||||+|+.|.++....+| ....||||||+|||||++++.. .|||||||+|+|| +.++|.+.+++|.+++|+|++
T Consensus 581 N~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~ 658 (876)
T KOG1041|consen 581 NVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQD 658 (876)
T ss_pred hhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcc
Confidence 99999999998776444444 4578999999999999998755 5999999999997 999999999999999999987
Q ss_pred HHHH-------hcC-----CCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCC
Q 002287 828 LFKT-------WQD-----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHH 895 (942)
Q Consensus 828 l~~~-------~~~-----~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~ 895 (942)
+.++ |.+ |.++||||||||||||.+|+++|+.+||+||..+.++|+|+||||||+||||||||+.+..
T Consensus 659 ~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~ 738 (876)
T KOG1041|consen 659 LGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELS 738 (876)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCC
Confidence 4433 322 3334999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCccCCCCCCcCceeecccccCCCcccEEEeecCCcccccc-cccc
Q 002287 896 DRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYF-LRFC 941 (942)
Q Consensus 896 ~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsr-p~y~ 941 (942)
+ +..++.+||+||||||+.||||.+||||||||+++||||| +.|+
T Consensus 739 ~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~ 784 (876)
T KOG1041|consen 739 K-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYT 784 (876)
T ss_pred C-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEE
Confidence 2 2246789999999999999999999999999999999999 5886
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-111 Score=933.24 Aligned_cols=658 Identities=25% Similarity=0.402 Sum_probs=566.8
Q ss_pred CCCCCCCcceEEeeeEEeecC-CCceeeeEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEeccceEEecCCCCC
Q 002287 206 GRGSTGTRCIVKANHFFAELP-DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF 284 (942)
Q Consensus 206 ~~Gt~G~~v~l~tN~f~v~~~-~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~~~Lys~~~L~~ 284 (942)
+.|+.|.+|+|.||||++... ++.||||+|+|.|.+++++++.+++.. |.+ .+|. ..+|||. .||..++|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~~----h~~-lig~-~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLYN----HTD-LIGK-GYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHHH----hHh-hhcc-ceeecce-eehhhHHHhh
Confidence 569999999999999998765 899999999999999999998887763 333 2443 4689997 7999988753
Q ss_pred CcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhc-CCCCcccccCcccc
Q 002287 285 LSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRE-LPTTRYCPVGRSFY 363 (942)
Q Consensus 285 ~~~~f~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~-~~~~~~~~~Gr~ff 363 (942)
+.. .+. +..+....++|+||++.++.. .+.++||+||+|+|. +..+++.++||+||
T Consensus 160 ~~t----el~------~ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQT----ELV------SKSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhh----eee------cccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 221 111 134678899999999987643 457899999999998 56789999999999
Q ss_pred CCCCCCcccC-CCCeEEeeeeeeeeeeccceeEEEEecceeeeeccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccc
Q 002287 364 SPDLGRRQPL-GEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (942)
Q Consensus 364 ~~~~~~~~~l-~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkG 442 (942)
+|.. ..++ .+.+++|+||.+|||..|..++|+.|++|+ ..+..||+|+|..+... ++...+++++.+.|
T Consensus 217 np~~--~i~ip~~km~lwPGy~tSIrq~E~~illctei~hK-vmR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPRA--KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHK-VMRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCCc--ccccccccceecCcchhHHHHhhhceeeehhhhhh-HhhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 9873 3444 578999999999999999999999999998 68999999999998753 24577899999999
Q ss_pred eEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHHHHcCCcccCCCCceEEecCCC--------CCccc
Q 002287 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQ--------RPNYL 514 (942)
Q Consensus 443 l~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~~--------k~~yl 514 (942)
+.|.|+|| ||+|||++|+|+.++.+||..++ .+||+.|||+++|||+|++.+||+|+...++ +.+++
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d--geIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD--GEISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC--ceeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99999999 89999999999999999998643 4999999999999999999999999986432 34799
Q ss_pred cccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCC--ChhhhccCeEecCcceEeeeEEeCCCc
Q 002287 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHE--DPYAREFGIKISEKLASVEARILPAPW 592 (942)
Q Consensus 515 P~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~--~~~l~~fGi~I~~~~~~v~arvLp~P~ 592 (942)
.||||+++ |-...++.+.+.|++|.++|...|++|...+..++..+.-+. -+.|+.|||+++++.++|+|||||+.+
T Consensus 362 IPELc~~T-GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEk 440 (845)
T KOG1042|consen 362 IPELCFLT-GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEK 440 (845)
T ss_pred ehhhhhcc-CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccc
Confidence 99999999 666667778889999999999999999999999887764433 356899999999999999999999999
Q ss_pred eeeccCCCccccCCCCcccc--ccCceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCC
Q 002287 593 LKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (942)
Q Consensus 593 i~y~~~~~~~~~~p~~g~Wn--~~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~ 670 (942)
|.+++.. ....+..++|. ++..+++....+++|+|++..++ ..++++|+++|.+.+..+||++..|-++.+.++
T Consensus 441 I~~~~~~--~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~--~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~dd 516 (845)
T KOG1042|consen 441 ILFGNQK--VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRN--NSEAQEFINMLRRVASSMGMQIREPICVEIKDD 516 (845)
T ss_pred eecCCcc--cCCCcchhhhhhhcccccccccCCCcceEEEecCcc--HHHHHHHHHHHHHhccccceecCCceEEEeCCC
Confidence 9999741 22334568997 57788999999999999976554 568999999999999999999988666777788
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccc--hHHHHHHHHH
Q 002287 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMS--KQYMANVALK 748 (942)
Q Consensus 671 ~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~--~q~~~NI~lK 748 (942)
+++.|.+++++.. +.++|||+||+|+.+.+.|+.||++++++.+||||||+.+|+.+.. .++..+|+||
T Consensus 517 r~~tYvraiqq~v---------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQ 587 (845)
T KOG1042|consen 517 RPGTYVRAIQQVV---------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQ 587 (845)
T ss_pred ChHHHHHHHHHhc---------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHH
Confidence 8999988887765 3689999999999999999999999999999999999999997654 5788899999
Q ss_pred HhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhHHHHH
Q 002287 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL 828 (942)
Q Consensus 749 iN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l 828 (942)
|||||||..|.|+ ||+ +.+||||+||+|.+. ....|++|+||||| ..+++|++.+..|...+|+.+.|
T Consensus 588 mnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L 655 (845)
T KOG1042|consen 588 MNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL 655 (845)
T ss_pred HhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH
Confidence 9999999999885 676 679999999999875 34679999999999 99999999999999999999876
Q ss_pred H-------HHhcCCC-----CcEEEcCCCCchhHHHHHHHHHH----HHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 002287 829 F-------KTWQDPG-----TPYIFPDGVSEGQFYQVLLYELD----AIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 892 (942)
Q Consensus 829 ~-------~~~~~~~-----~PIiYRDGVsEgQf~~Vl~~Ev~----~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~ 892 (942)
. +.|.+.+ ++|||||||||||+.+|.++||+ ++.+.++++..+|+|+++||||+||.++|||..
T Consensus 656 ~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~ 735 (845)
T KOG1042|consen 656 KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQ 735 (845)
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhh
Confidence 3 3455433 34999999999999999999999 777777888878999999999999999999987
Q ss_pred CCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCccccccc-cc
Q 002287 893 NHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-RF 940 (942)
Q Consensus 893 ~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~y 940 (942)
... ...||+||||||++||.|+++||||+||++.|||..| .|
T Consensus 736 ~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsY 778 (845)
T KOG1042|consen 736 GSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSY 778 (845)
T ss_pred CCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceE
Confidence 653 5789999999999999999999999999999999996 55
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.9e-78 Score=693.69 Aligned_cols=356 Identities=46% Similarity=0.790 Sum_probs=302.0
Q ss_pred hhhhccCeEecCcceEeeeEEeCCCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCCcchh----HHHH
Q 002287 567 PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQD----SIAR 642 (942)
Q Consensus 567 ~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~----~~~~ 642 (942)
++|++|||+|+++|++|+||+||||+|.|+++.+ ...+.+|+||+++++|++++.+++|+||++.++.+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~--~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK--TVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc--ccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 3689999999999999999999999999996422 345778999999999999999999999988653222 4799
Q ss_pred HHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhcc
Q 002287 643 GFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDL 722 (942)
Q Consensus 643 ~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~ 722 (942)
.|++.|.+.|+.+||++. ..+.. ..+ .++.+++.+.++. ...++|||||||+++.++|+.||++||+++
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~~---~~~----~~~~~~~~~~~~~--~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIAS---VEG----RVEELFAKLKQAK--GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHhcCCccc--ccccc---cch----hHHHHHHHHHhhc--cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 999999999999999986 21111 112 2333333332221 246999999999988889999999999999
Q ss_pred Cceeeeeeeccccc-cchHHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCC-CCCCcEEEEE
Q 002287 723 GLVSQCCLTKHVFK-MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE-DSSPSIAAVV 800 (942)
Q Consensus 723 gI~TQci~~~t~~K-~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~-~~~pSiaavV 800 (942)
||+||||..+++.| .++||+.||+||||+||||+||.|++.. .++....+|||||+||+||++++ ...|||||||
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999986 7799999999999999999999997652 22344689999999999999875 4689999999
Q ss_pred EecCCCCccceeEEEEeccCchhHHHHHHHH-------hcCCC--Cc---EEEcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 002287 801 ASQDWPEVTKYAGLVCAQAHRQELIQDLFKT-------WQDPG--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASL 868 (942)
Q Consensus 801 aS~d~~~~~ky~~~~~~Q~~~~EiI~~l~~~-------~~~~~--~P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l 868 (942)
||+| .++++|.+.+++|++++|+|++|.++ |++.+ .| ||||||||||||.+|+++|+++|++||.++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~ 303 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKL 303 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999998876544 44322 25 999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCcccccc-cccc
Q 002287 869 EPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYF-LRFC 941 (942)
Q Consensus 869 ~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsr-p~y~ 941 (942)
.++|+|+||||||+||||||||+.+..+.+ .+.+||+||||||++||+|.++|||||||.++||||| ++|+
T Consensus 304 ~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~ 375 (426)
T cd04657 304 YPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYH 375 (426)
T ss_pred ccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEE
Confidence 888999999999999999999998765421 1379999999999999999999999999999999999 5886
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.9e-74 Score=667.63 Aligned_cols=378 Identities=28% Similarity=0.416 Sum_probs=326.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccCCCC--hhhhccCeEecCcceEeeeEEeCCCceeeccCCCccccCCCCcccc
Q 002287 535 QITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN 612 (942)
Q Consensus 535 q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~--~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn 612 (942)
.|++|+++|+.+|.+|++.|.++++.+.++.+ ++|++|||+|+++|++|+||+|+||.|.|+++. ...+.+++|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 47899999999999999999999998877665 589999999999999999999999999999742 1235678887
Q ss_pred c--cCceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhc
Q 002287 613 M--MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKL 690 (942)
Q Consensus 613 ~--~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~ 690 (942)
+ .+.+|+.+..+++|+||++. .+.+.++.|++.|.+.|+.+||.+..+.++.+...+.+++.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 46678999999999999875 3567899999999999999999998755555544455666666655432
Q ss_pred CCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeecccccc--chHHHHHHHHHHhhhcCccccccccccccCC
Q 002287 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRI 768 (942)
Q Consensus 691 ~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~i 768 (942)
.+++|+|||+|+++.++|..||++|+.++||+||||..+++.|. ..+++.||+||||+||||+||.|...
T Consensus 151 ---~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~----- 222 (448)
T cd04658 151 ---SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP----- 222 (448)
T ss_pred ---CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----
Confidence 47999999999988789999999999999999999999999764 56899999999999999999998653
Q ss_pred CccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhH-HHHHHHH-------hcCCC--Cc
Q 002287 769 PLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLFKT-------WQDPG--TP 838 (942)
Q Consensus 769 P~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~Ei-I~~l~~~-------~~~~~--~P 838 (942)
.....+|||||+||+|+++. ..|||||+|||+| .++++|++.++.|..++|+ +++|.++ |++.+ .|
T Consensus 223 -~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~~~~~~P 298 (448)
T cd04658 223 -PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKENKKLP 298 (448)
T ss_pred -CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 13358999999999999863 4699999999999 9999999999999998887 6665443 54322 24
Q ss_pred ---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeeccc
Q 002287 839 ---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSK 915 (942)
Q Consensus 839 ---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~ 915 (942)
||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. ..+||+||||||++
T Consensus 299 ~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~~N~~~GTvVd~~ 372 (448)
T cd04658 299 SRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NFSNPPPGTVVDSE 372 (448)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CCCCCCCCcEeccc
Confidence 999999999999999999999999999998888999999999999999999997653 46899999999999
Q ss_pred ccCCCcccEEEeecCCccccccc-ccc
Q 002287 916 ICHPTEFDFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 916 It~p~~~DFyL~Sh~~~qGTsrp-~y~ 941 (942)
||+|..+||||+||.++|||||| +|+
T Consensus 373 it~p~~~dFyL~s~~~~qGtarP~~Y~ 399 (448)
T cd04658 373 ITKPEWYDFFLVSQSVRQGTVTPTHYN 399 (448)
T ss_pred ccCCCcccEEEeccccCccCCCCceEE
Confidence 99999999999999999999995 886
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1e-65 Score=587.22 Aligned_cols=323 Identities=29% Similarity=0.412 Sum_probs=269.8
Q ss_pred cceEeeeEEeCCCceeeccCCCccccCCCCccccccCceeeeCcee-ceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCc
Q 002287 579 KLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTV-NHWICINFSRHVQDSIARGFCFELAQMCYISGM 657 (942)
Q Consensus 579 ~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l-~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm 657 (942)
.+++|+||+||||.|.|+++ |++.+++|+.++.+ ++|+|+++.+ +..++|++.|.+.|+.+||
T Consensus 1 ~~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~ 64 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGM 64 (393)
T ss_pred CceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999751 99999999999999 9999998853 3356899999999999999
Q ss_pred ccCC-CCccCCCCC--CchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccc
Q 002287 658 AFNP-EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHV 734 (942)
Q Consensus 658 ~i~~-~p~i~~~~~--~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~ 734 (942)
.+.+ ++...+... +.+++++.|++.. ..+++|||||+|+++.++|..||++|+.+ ||+||||+.+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~ 134 (393)
T cd02826 65 KIKEIPIVSWIEDLNNSFKDLKSVFKNAI---------KAGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTA 134 (393)
T ss_pred ccCCCCCcceeecccccHHHHHHHHHHHh---------hcCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhh
Confidence 9987 333222211 2334444444332 14799999999999889999999999988 999999999999
Q ss_pred cc--cchHHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCC-CCCCCcEEEEEEecCCCCccce
Q 002287 735 FK--MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG-EDSSPSIAAVVASQDWPEVTKY 811 (942)
Q Consensus 735 ~K--~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g-~~~~pSiaavVaS~d~~~~~ky 811 (942)
.+ ..++++.||+||||+||||+||.|+.+ .....+|||||+||+|++++ ....||++|||||+| .+ +.|
T Consensus 135 ~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~ 206 (393)
T cd02826 135 KKMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFL 206 (393)
T ss_pred ccccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-ccc
Confidence 76 668999999999999999999999653 12357899999999999875 345799999999999 65 455
Q ss_pred eEEEEeccCchhHHHHHHHH-------hcC--CC-Cc---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Q 002287 812 AGLVCAQAHRQELIQDLFKT-------WQD--PG-TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF 878 (942)
Q Consensus 812 ~~~~~~Q~~~~EiI~~l~~~-------~~~--~~-~P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~ 878 (942)
.+.++.|..++|++++|.++ |++ .. .| ||||||||||||++|+++|+++|++||. +..+|+|+|||
T Consensus 207 g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~it~ 285 (393)
T cd02826 207 GGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKLVI 285 (393)
T ss_pred ceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCEEE
Confidence 56778888888877665443 432 12 34 9999999999999999999999999998 77789999999
Q ss_pred EEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCccccccc-ccc
Q 002287 879 VVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 879 Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~y~ 941 (942)
|+|+||||+|||+.+..+ ..+||+||||||++||||..+||||+||.++|||+|| +|+
T Consensus 286 Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~ 344 (393)
T cd02826 286 IVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYT 344 (393)
T ss_pred EEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEE
Confidence 999999999999976543 3589999999999999999999999999999999995 886
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2e-51 Score=455.87 Aligned_cols=234 Identities=45% Similarity=0.704 Sum_probs=200.5
Q ss_pred EEEEEecCCCCcchhhhhhhhhhccCceeeeeeecccccc--chHHHHHHHHHHhhhcCccccccccccccCCCccCCCC
Q 002287 698 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRP 775 (942)
Q Consensus 698 lvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~ 775 (942)
|||||+|+++.+.|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||.|+.+.+. ....++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5899999988889999999999999999999999999877 46999999999999999997444321 011111 78
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhHHHHHH-------HHhcCC--C-Cc---EEEc
Q 002287 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF-------KTWQDP--G-TP---YIFP 842 (942)
Q Consensus 776 tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~-------~~~~~~--~-~P---IiYR 842 (942)
|||||+||+|+++.....||++|+|+|+| .+.++|.+.+..|..++|++++|. +.|++. . .| ||||
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyR 155 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYR 155 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEE
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 99999999999876656799999999999 999999999999999888776643 335332 2 35 9999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcc
Q 002287 843 DGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEF 922 (942)
Q Consensus 843 DGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~ 922 (942)
||||||||.+|+++|+++|++||.++.++|+|+||||+|+||||+|||+.+..+ ...||+||||||+.||+|..+
T Consensus 156 dGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~Gtvvd~~i~~~~~~ 230 (302)
T PF02171_consen 156 DGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPGTVVDTGITSPNYF 230 (302)
T ss_dssp ES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTTEEESSEEEECSBE
T ss_pred cccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCCeeeccceeeecce
Confidence 999999999999999999999999999899999999999999999999987742 578999999999999999999
Q ss_pred cEEEeecCCccccccc-ccc
Q 002287 923 DFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 923 DFyL~Sh~~~qGTsrp-~y~ 941 (942)
||||+||.++|||+|| +|+
T Consensus 231 ~f~l~s~~~~~Gt~~P~~y~ 250 (302)
T PF02171_consen 231 EFYLVSHTARQGTARPTHYT 250 (302)
T ss_dssp EEEEETSCCCSSSEEEEEEE
T ss_pred eeeeeecccccccccccEEE
Confidence 9999999999999994 886
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.5e-32 Score=315.99 Aligned_cols=213 Identities=22% Similarity=0.220 Sum_probs=160.0
Q ss_pred CCceEEEEEecCCC------CcchhhhhhhhhhccCceeeeeeecccccc--chHHHHHHHHHHhhhcCccccccccccc
Q 002287 694 KELDLLIVILPDNN------GSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAIS 765 (942)
Q Consensus 694 ~~~qlvl~ilp~~~------~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~--~~q~~~NI~lKiN~KLGG~n~~l~~~~~ 765 (942)
..++++||++|++. .++|..||++| .++||+||||..+|+.+. ..+++.||++|||+||||+||.|...
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 47899999999875 68999999987 689999999999999754 57899999999999999999998642
Q ss_pred cCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccce---eEEEEeccC----chhHHHHHHHHhcC----
Q 002287 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKY---AGLVCAQAH----RQELIQDLFKTWQD---- 834 (942)
Q Consensus 766 ~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky---~~~~~~Q~~----~~EiI~~l~~~~~~---- 834 (942)
...+|||||+||+|+..+....+++|+| .+.| .....+ ......+.. -.+++.+.++.|++
T Consensus 186 ------~~~~~~iIGidv~~~~~~~~~~~~~a~v-f~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~~~~ 257 (404)
T cd04659 186 ------SDPADLYIGIGFARSRDGEVRVTGCAQV-FDSD-GLGLILRGAPIEEPTEDRSPADLKDLLKRVLEGYRESHRG 257 (404)
T ss_pred ------CCCCeEEEEEEEEEcCCCCEEEEEEEEE-EcCC-CCEEEEecCccCCcccccCHHHHHHHHHHHHHHHHHHcCC
Confidence 2468999999999997542223454433 2333 111111 111112211 12333344444543
Q ss_pred --CCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceee
Q 002287 835 --PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVV 912 (942)
Q Consensus 835 --~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVV 912 (942)
|.++||||||+ +.++|+++|++||.++. |+|+||+|+|+||+|||+.+..+ ...||++||||
T Consensus 258 ~~P~rIiihrdg~-------~~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~-----~~~np~~GT~v 321 (404)
T cd04659 258 RDPKRLVLHKDGR-------FTDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP-----NGFPPRRGTYV 321 (404)
T ss_pred CCCeEEEEECCCC-------CCHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC-----CCCCCCCceEE
Confidence 22339999999 47999999999999873 99999999999999999976532 23799999999
Q ss_pred cccccCCCcccEEEeecCCc--------cccccc
Q 002287 913 DSKICHPTEFDFYLCSHAGI--------QVSYFL 938 (942)
Q Consensus 913 D~~It~p~~~DFyL~Sh~~~--------qGTsrp 938 (942)
|.. .+||||++|... |||++|
T Consensus 322 ~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~P 350 (404)
T cd04659 322 KLS-----DDEGLLWTHGSVPKYNTYPGMGTPRP 350 (404)
T ss_pred EeC-----CCeEEEEecCCccccccCCCCCCCCc
Confidence 954 599999999996 999997
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.89 E-value=3.3e-23 Score=201.84 Aligned_cols=133 Identities=34% Similarity=0.609 Sum_probs=109.8
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHH
Q 002287 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (942)
Q Consensus 409 ~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~ 488 (942)
++|+|++.++.+.... .....+.+++++|+|++|.++|++. .+.|+|.+|+++.+++.+|+.+ +|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999999765421 1123444599999999999999943 3999999999999999999864 589999999999
Q ss_pred HHcCCcccCCCCceEEecCCCC--CccccccceeecCCcccccCCCHHHHHHHHHHhcCC
Q 002287 489 ETYGFVIQHTQWPCLQVGNQQR--PNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (942)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~k--~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~ 546 (942)
++||++|+||+||||+++...+ .+|||||||.|+++|++..++...+.+.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999998864
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.85 E-value=6.9e-21 Score=179.98 Aligned_cols=113 Identities=49% Similarity=0.879 Sum_probs=99.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHH
Q 002287 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (942)
Q Consensus 409 ~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~ 488 (942)
++|+|+++++++..... .+++.++.+++++|+|++|.++|+++.+|.|+|.+|++.++.+.+|+.++.++.+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTPL-GLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCccccc-ccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 68999999998764322 45677888999999999999999865579999999999999899998654335899999999
Q ss_pred HHcCCcccCCCCceEEecCCCCCccccccceeec
Q 002287 489 ETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIV 522 (942)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~k~~ylP~Elc~i~ 522 (942)
++||++|+||+||||++++..+++|||||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999998888999999999985
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.84 E-value=1e-20 Score=178.52 Aligned_cols=112 Identities=29% Similarity=0.437 Sum_probs=98.7
Q ss_pred cccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHH
Q 002287 408 PLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYF 487 (942)
Q Consensus 408 ~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf 487 (942)
+++|+|+++++++.+...+.+.+.++.++.++|+|++|.++|++ .++.|+|.+|++.++++. |+ +.+|+++||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~-~~r~y~i~~i~~~~a~~~-f~-~~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNP-LNRVYRPDGETRLKAPSQ-LK-HSDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCC-CceEEEEeeEECCCChhh-ee-cCCCCEEEHHHHH
Confidence 36899999999986655566778889999999999999999984 468999999999999888 75 3457899999999
Q ss_pred HHHcCCcccCCCCceEEecCC---CCCccccccceeec
Q 002287 488 YETYGFVIQHTQWPCLQVGNQ---QRPNYLPMEVCKIV 522 (942)
Q Consensus 488 ~~~Y~i~L~~p~lP~l~~g~~---~k~~ylP~Elc~i~ 522 (942)
+++||++|+||+||||++++. .+.+|||||||.|+
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999974
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.78 E-value=4.1e-19 Score=167.07 Aligned_cols=106 Identities=26% Similarity=0.387 Sum_probs=91.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHH
Q 002287 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (942)
Q Consensus 409 ~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~ 488 (942)
.+++|++.++++... ...++++++++|+|++|.++|+ ++.|+|++|+++.++.++|+. .++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~-~~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKK-SDGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcC-CCCCeeeHHHHHH
Confidence 478999999876532 1246788999999999999997 799999999999999999974 3356899999999
Q ss_pred HHcCCcccCCCCceEEecCC--------CCCccccccceeecC
Q 002287 489 ETYGFVIQHTQWPCLQVGNQ--------QRPNYLPMEVCKIVE 523 (942)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~--------~k~~ylP~Elc~i~~ 523 (942)
++||+.|+||+||||+++.+ .+.+|||||||.|+.
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 99999999999999999763 347999999999983
No 13
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=99.62 E-value=1.3e-15 Score=132.41 Aligned_cols=100 Identities=63% Similarity=1.019 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCCCccCCCCCCCC
Q 002287 86 GTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSP 165 (942)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (942)
|+..|+++|+||+..-||+++|+||+|| + +...++++++++||||||++++||++++++|++++++|+++++
T Consensus 2 gp~eYqgrGRGgp~~qgG~~~yGggrgg-------~-~ps~G~p~r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~ 73 (104)
T PF12764_consen 2 GPPEYQGRGRGGPPQQGGRPGYGGGRGG-------G-GPSGGGPPRPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPP 73 (104)
T ss_pred CCccccccCCCCCcccCCCCCCCCCCCC-------C-CCCCCCCcCCCcchhhcccCCcccCcccCCCCcCcCCCccCCC
Confidence 4556777766665443444444332221 1 1234556777889999999999999999889999999999886
Q ss_pred Cchh--hhhhhcccccCcccCcCCcCCCCC
Q 002287 166 ELSE--VSQQFQQLSLPEEVSSSQVIQPAP 193 (942)
Q Consensus 166 ~~~~--v~~~~~~l~~~~~~~~~~~~~~~p 193 (942)
|... |+++|++|++..++++++.+.+.|
T Consensus 74 e~s~~qv~QQfqqLsi~~e~s~sQaiQp~P 103 (104)
T PF12764_consen 74 EPSTVQVTQQFQQLSIQQESSPSQAIQPAP 103 (104)
T ss_pred CcchHHHHHHHHHHhhccCCCcccccCCCC
Confidence 6655 699999999988887777775544
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.52 E-value=1.3e-14 Score=139.56 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=71.4
Q ss_pred HHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHHHHcCCcccCCCCceEEecC--------
Q 002287 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN-------- 507 (942)
Q Consensus 436 i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~-------- 507 (942)
.+++|+|++|.++|+ +|.|+|++|+ +.+++++|+.+++++.+||+|||+++|||.|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999997 7999999999 9999999986553367999999999999999999999999751
Q ss_pred ------------CCC---CccccccceeecC
Q 002287 508 ------------QQR---PNYLPMEVCKIVE 523 (942)
Q Consensus 508 ------------~~k---~~ylP~Elc~i~~ 523 (942)
+.+ .++||||||.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccccceEEEeChHHhcccc
Confidence 011 4689999998763
No 15
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.42 E-value=8.5e-14 Score=110.71 Aligned_cols=52 Identities=62% Similarity=1.081 Sum_probs=42.0
Q ss_pred cccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeecc
Q 002287 356 CPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP 408 (942)
Q Consensus 356 ~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~ 408 (942)
+.+||+||+++... .+|++|+|+|+||++||||++++|+||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 36899999877433 78999999999999999999999999999999999975
No 16
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.15 E-value=1.2e-10 Score=135.99 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=6.3
Q ss_pred ccccCCCC
Q 002287 3 RKKRTEQP 10 (942)
Q Consensus 3 ~~~~~~~~ 10 (942)
|+.|+|+|
T Consensus 1167 KmaryDnG 1174 (1282)
T KOG0921|consen 1167 KMARYDNG 1174 (1282)
T ss_pred ccccccCC
Confidence 67788887
No 17
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.75 E-value=1.1e-08 Score=94.91 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=59.3
Q ss_pred HHccceEEEEeecCCc-cceEEEecccCCCCcceeeeecCCCcEeeHHHHHHHHcCCcccCCCCceEEecC
Q 002287 438 KALRGVRVEVTHRGNM-RRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (942)
Q Consensus 438 ~~LkGl~V~~~y~~~~-~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~ 507 (942)
+.+.|..|.+.|++.+ .++|+|++|.++.++.++|+.+ + .+|++|||+++|||.|++++||||.++.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 5799999999998422 3899999999999999999743 2 6999999999999999999999999974
No 18
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00031 Score=80.22 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHhcC-cccCCC-CccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhh
Q 002287 639 SIARGFCFELAQMCYISG-MAFNPE-PVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKR 716 (942)
Q Consensus 639 ~~~~~F~~~L~~~~~~~G-m~i~~~-p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~ 716 (942)
..+..|.+.|....+..+ +...-. +.+.....++.. ...|..+++++ ....++...+-++...|+.+|+
T Consensus 356 ~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~-kddl~~iIkei--------d~ee~~k~e~ykdd~~YailKr 426 (685)
T COG1431 356 TRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKM-KDDLTKIIKEI--------DVEELKKQEMYKDDVKYAILKR 426 (685)
T ss_pred hHHHHHHHHHHHHHHhccchhhhcccceeeecccchhh-hccchhhhhhh--------hhhhhccccccccchHHHHHHh
Confidence 457888899998888776 432111 333333333321 13344444432 1222334444566678999998
Q ss_pred hhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcE
Q 002287 717 ICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSI 796 (942)
Q Consensus 717 ~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSi 796 (942)
.+.-|+||.++-.+..|.-.-++.|+|+|+-||-+|+++.+.+. ...-+-|+|+||+.-.-+ ...+
T Consensus 427 ---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~g---n~tV 492 (685)
T COG1431 427 ---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEG---NWTV 492 (685)
T ss_pred ---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeC---CeEE
Confidence 44569999999999887778899999999999999999977542 112347999999987632 2344
Q ss_pred EEEEEecC-CCCccceeEEEEec-cCchhHHHHHHH-----HhcCCCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhC
Q 002287 797 AAVVASQD-WPEVTKYAGLVCAQ-AHRQELIQDLFK-----TWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLE 869 (942)
Q Consensus 797 aavVaS~d-~~~~~ky~~~~~~Q-~~~~EiI~~l~~-----~~~~~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~ 869 (942)
-|+....| -...-+|+-.+..- ..+-|-+-+.++ .|...++|++.|||- +...|++++++-=..+.
T Consensus 493 ~gct~~f~seg~l~eyy~t~tpa~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg 565 (685)
T COG1431 493 EGCTSCFVSEGGLEEYYHTVTPALGERLETSGRYLEKMNWRGFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG 565 (685)
T ss_pred eeeeEEEeccCceEEeeecccCCccchhhhHHHHHHHHHhhhhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC
Confidence 44333333 02233443322211 112222222222 155567799999994 67889888887765552
Q ss_pred CCCCCCEEEEEEeecccccccccCC
Q 002287 870 PNYQPPVTFVVVQKRHHTRLFANNH 894 (942)
Q Consensus 870 ~~y~Pkit~Ivv~Krh~tRff~~~~ 894 (942)
--++++.+.|. |-+||..+.
T Consensus 566 ----sn~ev~~i~kn-Np~vf~~e~ 585 (685)
T COG1431 566 ----SNPEVNRILKN-NPWVFAIEG 585 (685)
T ss_pred ----CChhhheeccc-CCeEEEecc
Confidence 34455555544 444887654
No 19
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=96.63 E-value=0.0023 Score=56.89 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCcCCcC--CCCCCCCCCCCCCCCccCCCC--CCCCCchhhhhh
Q 002287 125 SGGPTRSSQIPELHQA--TPTPFSSGVMTQPTQSQAGSS--SHSPELSEVSQQ 173 (942)
Q Consensus 125 ~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 173 (942)
...+++|+|+...||| ++.|..++++++..++++.+. +++++++++.++
T Consensus 40 ~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e 92 (104)
T PF12764_consen 40 PSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQE 92 (104)
T ss_pred CCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccC
Confidence 4778999999999999 344555555533333333333 566888887654
No 20
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.99 E-value=0.025 Score=58.78 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=3.4
Q ss_pred eeEEEec
Q 002287 232 QYDVTIT 238 (942)
Q Consensus 232 ~YdV~i~ 238 (942)
.|.|+|.
T Consensus 184 VYAVEfs 190 (317)
T KOG1596|consen 184 VYAVEFS 190 (317)
T ss_pred EEEEEec
Confidence 4555554
No 21
>COG4371 Predicted membrane protein [Function unknown]
Probab=86.33 E-value=1.4 Score=46.12 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.3
Q ss_pred CCchhhhhhhcccccCc
Q 002287 165 PELSEVSQQFQQLSLPE 181 (942)
Q Consensus 165 ~~~~~v~~~~~~l~~~~ 181 (942)
+++.++...+++++.+.
T Consensus 155 A~a~elk~eL~~iA~~a 171 (334)
T COG4371 155 AEADELKSELQRIAQQA 171 (334)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 45555666667766653
No 22
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=83.90 E-value=8.5 Score=45.99 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.6
Q ss_pred eEEeeeEEeecC
Q 002287 215 IVKANHFFAELP 226 (942)
Q Consensus 215 ~l~tN~f~v~~~ 226 (942)
.|.+|-|+.++.
T Consensus 869 V~~~~n~Pf~v~ 880 (944)
T KOG4307|consen 869 VLSCNNFPFDVT 880 (944)
T ss_pred EEEecCCCcccc
Confidence 566777766554
No 23
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=80.85 E-value=5.3 Score=45.29 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=6.6
Q ss_pred ecCCCceeeeEEE
Q 002287 224 ELPDKDLHQYDVT 236 (942)
Q Consensus 224 ~~~~~~iy~YdV~ 236 (942)
++.-.++--|+|+
T Consensus 181 d~rG~kVAsF~i~ 193 (641)
T KOG3915|consen 181 DLRGAKVASFTIE 193 (641)
T ss_pred eecCceeeEEEec
Confidence 4444455555553
No 24
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=72.20 E-value=28 Score=35.12 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=6.6
Q ss_pred CCceeeeEEEe
Q 002287 227 DKDLHQYDVTI 237 (942)
Q Consensus 227 ~~~iy~YdV~i 237 (942)
|.+|-+|.|+-
T Consensus 158 N~tv~~~~~~~ 168 (217)
T smart00157 158 NITIKQHTVTT 168 (217)
T ss_pred hhheeeeEecc
Confidence 45566777653
No 25
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=66.69 E-value=1.3e+02 Score=35.85 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHhcCCchH
Q 002287 530 RLNERQITALLKVTCQRPHE 549 (942)
Q Consensus 530 kl~~~q~~~mik~t~~~P~~ 549 (942)
.|++++.+.++......|.+
T Consensus 587 dlteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 587 DLTEEEVKKILDELVKDPSD 606 (727)
T ss_pred ccCHHHHHHHHHHHhcCcch
Confidence 56777777777766666655
No 26
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=62.98 E-value=60 Score=39.24 Aligned_cols=6 Identities=0% Similarity=-0.346 Sum_probs=2.3
Q ss_pred ceeeeE
Q 002287 229 DLHQYD 234 (942)
Q Consensus 229 ~iy~Yd 234 (942)
.+.+|.
T Consensus 898 I~~r~n 903 (944)
T KOG4307|consen 898 IRIRRN 903 (944)
T ss_pred eeEeec
Confidence 333443
No 27
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=59.38 E-value=42 Score=38.49 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=5.4
Q ss_pred Cccccccceeec
Q 002287 511 PNYLPMEVCKIV 522 (942)
Q Consensus 511 ~~ylP~Elc~i~ 522 (942)
++.+|+.-....
T Consensus 371 pvslppasv~ma 382 (641)
T KOG3915|consen 371 PVSLPPASVEMA 382 (641)
T ss_pred cccCCchhhHHH
Confidence 455555433333
No 28
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.72 E-value=37 Score=41.56 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=7.5
Q ss_pred CcceEEeeeEEeecC
Q 002287 212 TRCIVKANHFFAELP 226 (942)
Q Consensus 212 ~~v~l~tN~f~v~~~ 226 (942)
.+-.+.-|+|=+++.
T Consensus 635 ~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 635 VPRDLSENCFWVKVN 649 (1102)
T ss_pred CccccCccceeeecc
Confidence 344455555555544
No 29
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=56.64 E-value=4.1e+02 Score=31.83 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHHHhhhcCcccccccc
Q 002287 743 ANVALKINVKVGGRNTVLVD 762 (942)
Q Consensus 743 ~NI~lKiN~KLGG~n~~l~~ 762 (942)
.-|..||--|+=|.-+.+..
T Consensus 694 egl~qk~k~k~lgsgfevas 713 (727)
T PF05642_consen 694 EGLIQKLKKKFLGSGFEVAS 713 (727)
T ss_pred hhHHHHHHHHhccCcceeee
Confidence 45666776677666666543
No 30
>PLN03138 Protein TOC75; Provisional
Probab=50.77 E-value=11 Score=47.00 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=8.2
Q ss_pred CCCCccceeEEE
Q 002287 804 DWPEVTKYAGLV 815 (942)
Q Consensus 804 d~~~~~ky~~~~ 815 (942)
||..++||.+.+
T Consensus 642 ~~~~fNR~~~~~ 653 (796)
T PLN03138 642 KFPFFNRHQLTV 653 (796)
T ss_pred CCCceEEEEEEE
Confidence 467777777755
No 31
>PLN03138 Protein TOC75; Provisional
Probab=45.25 E-value=16 Score=45.62 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=9.1
Q ss_pred CCcccccccee-ecCCcccc
Q 002287 510 RPNYLPMEVCK-IVEGQRYS 528 (942)
Q Consensus 510 k~~ylP~Elc~-i~~gQ~~~ 528 (942)
+..++=-||-. +.||+.+.
T Consensus 364 rD~VIRREL~~~lkeGd~fN 383 (796)
T PLN03138 364 QLPIIDRELPKQLRQGHIFN 383 (796)
T ss_pred cCeEEeeecccccCCCcccC
Confidence 33344445542 45666553
No 32
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.07 E-value=83 Score=34.55 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=17.4
Q ss_pred CceEEecCCCCCccccccceeecCCcccc
Q 002287 500 WPCLQVGNQQRPNYLPMEVCKIVEGQRYS 528 (942)
Q Consensus 500 lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~ 528 (942)
+.+|-.......-|+|...|.|+.-|.-.
T Consensus 308 gW~lat~dg~~tG~iP~NYvkIi~rq~qs 336 (362)
T KOG3875|consen 308 GWLLATRDGGTTGLIPINYVKIIGRQPQS 336 (362)
T ss_pred ceeeeeccCCeeeeeehhhhhhhhcCCCC
Confidence 33444443344568888888888654433
No 33
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=36.24 E-value=1.7e+02 Score=30.72 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=49.0
Q ss_pred CCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhHHHHHHHHhcCCCCcEEEcCCCCchhHHH
Q 002287 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQ 852 (942)
Q Consensus 773 ~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~~~~~~~~~PIiYRDGVsEgQf~~ 852 (942)
..+.+|-|+|++|.. +..-.+|++|. ++|++..-....++.-.-. -| |=- | .
T Consensus 23 ~~~~~I~gvDiS~~~---~~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~---------------~P--YIP----G---~ 74 (208)
T cd06559 23 GEVRLVAGVDVSYKK---DGDLAVAAAVV-LDYPDLEVVETAVAVGEVT---------------FP--YIP----G---L 74 (208)
T ss_pred CCccEEEEEEeeecc---CCCeEEEEEEE-EECCCCcEEEEEEEEEecC---------------CC--Ccc----h---h
Confidence 467899999999975 12345665554 4655554444433321111 12 111 2 2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccc
Q 002287 853 VLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 890 (942)
Q Consensus 853 Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff 890 (942)
..-.|++.|.++++++. -.|.+.+|==+=..|-|.|
T Consensus 75 LafRE~p~l~~~~~~l~--~~PDlilVDG~G~~HpR~~ 110 (208)
T cd06559 75 LAFREGPPLLEALEKLK--TKPDLLLVDGHGIAHPRRF 110 (208)
T ss_pred HHHhhHHHHHHHHHhCC--CCCCEEEEeCCccccCCCc
Confidence 23577888888888774 2466666655555555554
No 34
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=33.59 E-value=1.9e+02 Score=35.47 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=7.8
Q ss_pred CCCCCEEEEEEe
Q 002287 871 NYQPPVTFVVVQ 882 (942)
Q Consensus 871 ~y~Pkit~Ivv~ 882 (942)
+--|.|+|-...
T Consensus 795 g~apr~~~~~~s 806 (828)
T PF04094_consen 795 GSAPRLAFALNS 806 (828)
T ss_pred CcCccccccCCC
Confidence 456888876543
No 35
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=33.14 E-value=1.5e+02 Score=29.55 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCc-cceeEEEEecc---C-chhHHHHH-HHHhcCC-----CCc-EEE
Q 002287 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV-TKYAGLVCAQA---H-RQELIQDL-FKTWQDP-----GTP-YIF 841 (942)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~-~ky~~~~~~Q~---~-~~EiI~~l-~~~~~~~-----~~P-IiY 841 (942)
.|.-|-++|+||-.. .-.|+++|.=.| ... .+.+=.+.+.. . .-+.+.+. ..-|+.. .-| +|.
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~~~~dDy~~M~Evl~RR~~~~~~~~~~lPDLil 84 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTVDGGDDYAAMREVLTRRFKRLKEEKEPLPDLIL 84 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE--STT-HHHHHHHHHHHHHCCCHHHT----SEEE
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCCCCCcHHHHHHHHHHHHHhcccccCCCCCCEEE
Confidence 467899999999753 235777766554 222 12222233331 1 11222222 2224332 237 888
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccc
Q 002287 842 PDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTR 888 (942)
Q Consensus 842 RDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tR 888 (942)
=|| +.||+.. .+++++++ +...++.=|+=.+.|.|+
T Consensus 85 IDG-G~gQl~a--------a~~~l~~l--gl~i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 85 IDG-GKGQLNA--------AKEVLKEL--GLNIPVIGLAKNDEHKTG 120 (155)
T ss_dssp ESS-SHHHHHH--------HHHHHHCT--T----EEEEESSSSE---
T ss_pred EcC-CHHHHHH--------HHHHHHHc--CCCeEEEEEEeccccccc
Confidence 999 6777654 47777766 344444444444556677
No 36
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=30.46 E-value=2e+02 Score=30.49 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=30.0
Q ss_pred hcccccCcccCcCCcCCCCCCCCCCcCCCCCCCCCCCCCcceEEeeeEEeecC-CCcee
Q 002287 174 FQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP-DKDLH 231 (942)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~p~~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~-~~~iy 231 (942)
++.|-+.......+.+.+.|++..-+ .||+ .+.++..||=++-+. +-.||
T Consensus 133 ~rsllvpsg~N~~qii~~~Pl~PIIV---~~P~-----~P~~~~~~~Pp~VVk~~PVi~ 183 (277)
T PF05387_consen 133 FRSLLVPSGQNNHQIIIHQPLPPIIV---HQPG-----APPKVLNNHPPLVVKPAPVIY 183 (277)
T ss_pred hhhhccccCCCCccEEEecCCCCeEe---cCCC-----CCchhhcCCCCeeecCCceEE
Confidence 35555554444555666667665544 5774 566777788777665 44555
No 37
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=28.96 E-value=5.2e+02 Score=28.90 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCccc---C--CCCccCCCC--CCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCC-----cchhh
Q 002287 646 FELAQMCYISGMAF---N--PEPVIPPIS--ARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNG-----SLYGD 713 (942)
Q Consensus 646 ~~L~~~~~~~Gm~i---~--~~p~i~~~~--~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~-----~~Y~~ 713 (942)
..|++.+..+||+. . .+|...... .-|++-...|+++.+.+.+ .++.|++.|-|..+- .-+..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~-----~~V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKA-----NGVDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHH-----TT-EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHH-----cCCEEEEEECcccccccCcHHHHHH
Confidence 46778888899874 1 124433221 1144445668888776654 689999999998653 23556
Q ss_pred hhhhhhh--ccCceeeeeeecccc-----------ccchHHHHHHHHHHhhhcCc
Q 002287 714 LKRICET--DLGLVSQCCLTKHVF-----------KMSKQYMANVALKINVKVGG 755 (942)
Q Consensus 714 IK~~~e~--~~gI~TQci~~~t~~-----------K~~~q~~~NI~lKiN~KLGG 755 (942)
||..+++ ++||-+=+|+.+-+. +...+--..|+..|+..|.-
T Consensus 93 L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~ 147 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIK 147 (306)
T ss_dssp HHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhc
Confidence 6666663 579999898877665 22245566788888877764
No 38
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=28.48 E-value=2.7e+02 Score=34.31 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=3.0
Q ss_pred ccHHHHH
Q 002287 409 LPVIDFV 415 (942)
Q Consensus 409 ~~lld~~ 415 (942)
.+|+..|
T Consensus 370 ep~~~~l 376 (828)
T PF04094_consen 370 EPLLQVL 376 (828)
T ss_pred chhhhhh
Confidence 3444444
No 39
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.72 E-value=2.2e+02 Score=35.27 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=5.4
Q ss_pred HHHHHHhcCCC
Q 002287 342 VLDIVLRELPT 352 (942)
Q Consensus 342 ~Lniilr~~~~ 352 (942)
+|.-+++++|.
T Consensus 734 ~iqnLik~lPe 744 (1102)
T KOG1924|consen 734 MIQNLIKHLPE 744 (1102)
T ss_pred HHHHHHHhCCC
Confidence 34444555553
No 40
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=26.70 E-value=1.1e+03 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=7.2
Q ss_pred CCcCCcCCCCCCC
Q 002287 134 IPELHQATPTPFS 146 (942)
Q Consensus 134 ~~~~~~a~~~~~~ 146 (942)
.|+++|++..|.-
T Consensus 578 ~Pe~PK~Pk~PKd 590 (943)
T PTZ00449 578 KPEFPKDPKHPKD 590 (943)
T ss_pred CCCCCCCCCCCCC
Confidence 3677777544443
No 41
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.30 E-value=2.3e+02 Score=26.66 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCCceEEEEEecCCC-CcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhh
Q 002287 693 GKELDLLIVILPDNN-GSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVK 752 (942)
Q Consensus 693 ~~~~qlvl~ilp~~~-~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~K 752 (942)
+..|.|+++.+.++. +..|...|...+.++||.+..+.... ....+-+..++-++|.-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 356889888876543 45788888888889999998886632 12345677778888754
No 42
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=23.29 E-value=1.7e+02 Score=30.80 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.2
Q ss_pred CchhhhhhhcccccC
Q 002287 166 ELSEVSQQFQQLSLP 180 (942)
Q Consensus 166 ~~~~v~~~~~~l~~~ 180 (942)
..+.+.+.++++...
T Consensus 55 ~~~~~~~~f~~vD~d 69 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRD 69 (221)
T ss_pred ccHHHHHHHHhhCcc
Confidence 344455555554443
No 43
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=22.95 E-value=2.7e+02 Score=30.16 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=28.7
Q ss_pred cccccc---CceeeeCceeceeEEEEeC----CcchhHHHHHHHHHHHHHHHhcCcccC
Q 002287 609 GQWNMM---NKKMVNGGTVNHWICINFS----RHVQDSIARGFCFELAQMCYISGMAFN 660 (942)
Q Consensus 609 g~Wn~~---~~kf~~~~~l~~W~vv~~~----~~~~~~~~~~F~~~L~~~~~~~Gm~i~ 660 (942)
|.|+|. ++.+.+..-+-+|.++||. .++-.++++.+...+-..-...|+.+.
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~ 178 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPV 178 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCcc
Confidence 678763 3333333345689999982 222234555555555555555666543
No 44
>PRK11617 endonuclease V; Provisional
Probab=22.29 E-value=3.9e+02 Score=28.46 Aligned_cols=87 Identities=29% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhHHHHHHHHhcCCCCcEEEcCCCCchhHHHH
Q 002287 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQV 853 (942)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~~~~~~~~~PIiYRDGVsEgQf~~V 853 (942)
...||-|+||+....+ .-.+|++| -+||++..-....+...+....-| | |.|
T Consensus 28 ~~~~VaGvDvsy~~~~---~~~~aa~V-vl~~~~~~~v~~~~~~~~~~~PYI------------P---------G~L--- 79 (224)
T PRK11617 28 PPRLIAGADVGFEQGG---EVTRAAIV-VLKYPSLELVEYQVARIATTMPYI------------P---------GFL--- 79 (224)
T ss_pred CccEEEEEEEEEcCCC---ceEEEEEE-EEECCCCcEEEEEEEEeccCCCcC------------c---------chH---
Confidence 4579999999995321 11334333 357776544333332221111111 1 122
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccc
Q 002287 854 LLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 890 (942)
Q Consensus 854 l~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff 890 (942)
--.|++.|.+|+.++. ..|.+.+|=-+=.-|-|.|
T Consensus 80 aFRE~P~~l~al~~l~--~~PdlllvDG~G~~HPR~~ 114 (224)
T PRK11617 80 SFREYPALLAAWEQLS--QKPDLVFVDGHGIAHPRRL 114 (224)
T ss_pred HHhhHHHHHHHHHhcC--cCCCEEEEcCceeECCCCc
Confidence 2467888888888874 3566666644444444443
No 45
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=21.97 E-value=1.3e+02 Score=32.07 Aligned_cols=6 Identities=0% Similarity=0.617 Sum_probs=2.8
Q ss_pred ccccCC
Q 002287 360 RSFYSP 365 (942)
Q Consensus 360 r~ff~~ 365 (942)
.+||+.
T Consensus 211 ~~YFDn 216 (233)
T PF11705_consen 211 ENYFDN 216 (233)
T ss_pred hccCCC
Confidence 345543
No 46
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.89 E-value=1.3e+02 Score=31.47 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=4.6
Q ss_pred cceEEeeeEE
Q 002287 213 RCIVKANHFF 222 (942)
Q Consensus 213 ~v~l~tN~f~ 222 (942)
.|.++.|+|.
T Consensus 95 TcrlmI~mfd 104 (221)
T KOG0037|consen 95 TCRLMISMFD 104 (221)
T ss_pred HHHHHHHHhc
Confidence 3444444443
No 47
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.40 E-value=1.7e+02 Score=31.83 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=48.7
Q ss_pred ceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCC--CccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEE
Q 002287 625 NHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPE--PVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVI 702 (942)
Q Consensus 625 ~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~--p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~i 702 (942)
+.++-++|++++..+....-.+.+.+.|.++||++... |-- ..+.........+.+-.-+..+++ ..+..|+-
T Consensus 132 ktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP-~sd~gv~gaqqfIlE~vp~~i~kY----Gkdtaff~ 206 (275)
T PF12683_consen 132 KTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDP-TSDVGVAGAQQFILEDVPKWIKKY----GKDTAFFC 206 (275)
T ss_dssp S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE----SSTCHHHHHHHHHHHHHHHHHHHH-----S--EEEE
T ss_pred ceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCC-CCCCCcHHHHHHHHHHHHHHHHHh----CCceeEEe
Confidence 34555679998887777777889999999999998531 100 001111111111222222233444 23445555
Q ss_pred ecCCCCcchhhhhhhhhhccCceeeeeeecc
Q 002287 703 LPDNNGSLYGDLKRICETDLGLVSQCCLTKH 733 (942)
Q Consensus 703 lp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t 733 (942)
+.+. ..=.-||++.+...=++-||+-+.+
T Consensus 207 TN~a--~~epllk~~~~~g~i~~e~~~psp~ 235 (275)
T PF12683_consen 207 TNDA--MTEPLLKQALEYGGIFPEADLPSPL 235 (275)
T ss_dssp SSHH--HHHHHHHHHHHH--BB---SS--TT
T ss_pred cCcc--ccHHHHHHHHHcCCEEEeCCCCChh
Confidence 5332 2235688888876667778876554
No 48
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.56 E-value=3.5e+02 Score=29.81 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=39.4
Q ss_pred CCceEEEEEecCC-CCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhh
Q 002287 694 KELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (942)
Q Consensus 694 ~~~qlvl~ilp~~-~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~ 751 (942)
..|.|+++.+.++ .+..|...|...+.++||.+..+....- ....-+.+++.|+|.
T Consensus 30 ~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (282)
T PRK14180 30 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNN 86 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 4688888877654 3467999888888899999988755321 123446677788874
Done!