Query 002287
Match_columns 942
No_of_seqs 373 out of 1369
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 20:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 6E-150 2E-154 1381.6 67.5 730 192-941 18-768 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 7E-134 3E-138 1234.8 50.4 729 193-941 11-952 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 3.8E-81 1.3E-85 750.0 32.2 597 217-941 6-644 (706)
4 1u04_A Argonaute, hypothetical 100.0 6E-72 2E-76 669.0 32.1 594 213-940 3-697 (771)
5 2yhb_A QDE-2, post-transcripti 100.0 2.7E-72 9.1E-77 642.8 22.8 311 613-941 2-342 (437)
6 3ho1_A Argonaute; argonaute, p 100.0 1.2E-62 3.9E-67 579.0 39.1 580 213-941 6-620 (685)
7 2yha_A Post-transcriptional ge 100.0 2.6E-53 8.9E-58 479.9 22.3 257 613-884 2-286 (388)
8 2w42_A PIWI, putative uncharac 100.0 1.9E-36 6.4E-41 346.7 8.0 292 587-934 5-332 (427)
9 4g0x_A Protein argonaute 1; MI 100.0 9.1E-30 3.1E-34 249.5 14.7 146 615-760 2-147 (147)
10 4g0o_A Protein argonaute 5; MI 100.0 6.7E-29 2.3E-33 240.9 11.6 138 615-760 2-139 (139)
11 1vyn_A Argonaute2; nucleic aci 99.9 1.5E-28 5.2E-33 239.2 9.8 138 406-546 2-143 (143)
12 3luc_A Protein argonaute-2; MI 99.9 2.3E-27 7.9E-32 229.9 12.8 135 615-757 2-138 (138)
13 4g0m_A Protein argonaute 2; MI 99.9 2.2E-27 7.5E-32 233.5 10.0 143 615-760 2-150 (150)
14 2xfm_A MIWI, PIWI-like protein 99.9 3E-25 1E-29 217.6 8.8 141 407-557 1-150 (150)
15 3mj0_A Protein argonaute-2; ar 99.9 4.9E-25 1.7E-29 208.1 9.4 118 407-528 1-123 (124)
16 3qir_A PIWI-like protein 2; st 99.9 4.4E-25 1.5E-29 214.3 9.1 137 407-554 1-147 (148)
17 3o7v_X PIWI-like protein 1; PI 99.8 3.8E-21 1.3E-25 180.8 10.1 105 409-522 2-115 (124)
18 1r6z_P Chimera of maltose-bind 99.8 9.5E-21 3.2E-25 224.0 10.1 131 399-532 375-509 (509)
19 2qvw_A GLP_546_48378_50642; di 98.7 7.4E-09 2.5E-13 125.4 5.6 85 435-523 151-253 (756)
20 2b5u_A Colicin E3; high resolu 62.1 2.1 7.2E-05 47.7 0.9 10 776-785 504-513 (551)
21 2b5u_A Colicin E3; high resolu 58.7 2 6.9E-05 47.9 0.0 6 269-274 189-194 (551)
22 3qbz_A DDK kinase regulatory s 30.0 34 0.0012 32.6 3.4 48 839-886 64-119 (160)
23 1dx0_A Prion protein; brain, r 20.6 21 0.00072 35.6 0.0 81 49-133 9-94 (219)
24 4b4u_A Bifunctional protein fo 20.2 2.4E+02 0.0082 29.9 8.0 65 693-759 51-118 (303)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=5.8e-150 Score=1381.55 Aligned_cols=730 Identities=41% Similarity=0.715 Sum_probs=627.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcceEEeeeEEeecCCCceeeeEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEe
Q 002287 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYD 271 (942)
Q Consensus 192 ~p~~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yD 271 (942)
+|.+++.+.+|+||++||.|++|.|.||||+|+++++.||||||+|.|+.+++++++++++++++.++...+++..++||
T Consensus 18 ~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 18 PPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 46667788999999999999999999999999999889999999999999999999999999988775555777777999
Q ss_pred ccceEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhcCC
Q 002287 272 GRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELP 351 (942)
Q Consensus 272 G~~~Lys~~~L~~~~~~f~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~~~ 351 (942)
|+++|||+.+||+++..+++.+.... ..+++.|+|+|++++++++++|.+|+.+...+.+.++||+||||||+.+
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~~-----~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~ 172 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLPG-----EGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLP 172 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHH
T ss_pred CcceEEECCcCCCCCcceEEEEecCC-----CCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhc
Confidence 99999999999986544444432111 1356789999999999999999999999988888999999999999998
Q ss_pred CCcccccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeeccccHHHHHHHHhcCCCC---CCCC
Q 002287 352 TTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPL 428 (942)
Q Consensus 352 ~~~~~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~---~~~l 428 (942)
+++|..+||+||++..+...++++|+|+|+||++|||+++++|+||||+++++|++++||+|+|.++++.++. .+.+
T Consensus 173 ~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~ 252 (861)
T 4f3t_A 173 SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPL 252 (861)
T ss_dssp HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCC
T ss_pred cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcccc
Confidence 8999999999998864445678899999999999999999999999999999999999999999999875432 3457
Q ss_pred ChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeec-CCC--cEeeHHHHHHHHcCCcccCCCCceEEe
Q 002287 429 SDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQV 505 (942)
Q Consensus 429 ~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~-~~G--~~iSV~~Yf~~~Y~i~L~~p~lP~l~~ 505 (942)
++.++.+++++|+|++|.++|.+..+|+|+|.+|++.++++.+|.++ ++| ++|||+|||+++|||+|+||+||||++
T Consensus 253 ~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~ 332 (861)
T 4f3t_A 253 TDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQV 332 (861)
T ss_dssp CHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEE
T ss_pred CHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEe
Confidence 78899999999999999999976557999999999988889999753 344 379999999999999999999999999
Q ss_pred cCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCChhhhccCeEecCcceEeee
Q 002287 506 GNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEA 585 (942)
Q Consensus 506 g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~a 585 (942)
+++++++|||||||.|++||++.++|+++|+++||++|+..|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+|
T Consensus 333 g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~g 412 (861)
T 4f3t_A 333 GQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTG 412 (861)
T ss_dssp SCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEE
T ss_pred cCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEE
Confidence 98888999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred EEeCCCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCC--cchhHHHHHHHHHHHHHHHhcCcccCCCC
Q 002287 586 RILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEP 663 (942)
Q Consensus 586 rvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~--~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p 663 (942)
||||||+|.|+++.+ ..+.|.+|+|||++++|++++++++|+|++|.. .+.++.++.|++.|.+.|+.+||.+..+|
T Consensus 413 RvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p 491 (861)
T 4f3t_A 413 RVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP 491 (861)
T ss_dssp EECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCC
T ss_pred EEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence 999999999986432 234678999999999999999999999999853 34577899999999999999999998666
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHH
Q 002287 664 VIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMA 743 (942)
Q Consensus 664 ~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~ 743 (942)
.+.......++++..++.+.+. ..++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~l~~~-------~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 492 CFCKYAQGADSVEPMFRHLKNT-------YAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH-------STTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred eEEEecCchHHHHHHHHHHHhh-------cCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 5432222344555555544321 24689999999965 578999999999999999999999999988999999
Q ss_pred HHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchh
Q 002287 744 NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 823 (942)
Q Consensus 744 NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E 823 (942)
|||||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+| .++++|.+.+++|.+++|
T Consensus 564 ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E 639 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQE 639 (861)
T ss_dssp HHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCC
T ss_pred HHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCcc
Confidence 99999999999999988653 23445568999999999999988667899999999999 889999999999999999
Q ss_pred HHHHHHHH-------hcC-----CCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 002287 824 LIQDLFKT-------WQD-----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 891 (942)
Q Consensus 824 iI~~l~~~-------~~~-----~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~ 891 (942)
+|++|.++ |.+ |.++||||||||||||++|+++|+++|++||.+++++|+|+||||||+||||||||+
T Consensus 640 ~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 719 (861)
T 4f3t_A 640 IIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFC 719 (861)
T ss_dssp SCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeee
Confidence 98776443 322 333499999999999999999999999999999998999999999999999999999
Q ss_pred cCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCccccccc-ccc
Q 002287 892 NNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 892 ~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~y~ 941 (942)
.+.++ ..++.+||+||||||++||||.+||||||||+++|||||| +|+
T Consensus 720 ~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~ 768 (861)
T 4f3t_A 720 TDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYH 768 (861)
T ss_dssp SSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEE
T ss_pred cCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEE
Confidence 87532 2357899999999999999999999999999999999995 886
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=7.3e-134 Score=1234.80 Aligned_cols=729 Identities=22% Similarity=0.339 Sum_probs=561.5
Q ss_pred CCCCCCcCCCCCCCCCCCCCcceEEeeeEEeecCCC---------------------ceeeeEEEecCCCCc--------
Q 002287 193 PPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDK---------------------DLHQYDVTITPEVTS-------- 243 (942)
Q Consensus 193 p~~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~~~---------------------~iy~YdV~i~pe~~~-------- 243 (942)
|.+...+.+|.||+|||.|++|.|+||||.|.+.+. .||+|+|+|.|+...
T Consensus 11 ~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~ 90 (1046)
T 4f1n_A 11 EDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPV 90 (1046)
T ss_dssp -CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-------------
T ss_pred CCccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccC
Confidence 456677899999999999999999999999999855 799999999986432
Q ss_pred ------hhhHHHHHHHHHHH--HHhhccCCccceEeccceEEecCCCC---CCcceEEEEEe-----cCCCC--------
Q 002287 244 ------RGVNRAVMEQLVKL--YRESHLGKRLPAYDGRKSLYTAGPLP---FLSKEFRITLL-----DDDDG-------- 299 (942)
Q Consensus 244 ------k~~~r~i~~~l~~~--~~~~~~g~~~~~yDG~~~Lys~~~L~---~~~~~f~v~l~-----~~~~~-------- 299 (942)
++.+++|+..|+++ +.. .++.+ +||||+++|||+.+|| +....+.|+.. ++.++
T Consensus 91 ~~~~~~~~k~~~ii~~ll~e~~~~~-~~~~~-ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 168 (1046)
T 4f1n_A 91 PPQELSKPKKYELIEALLDEDEILY-KYRDR-IAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASL 168 (1046)
T ss_dssp ----CCHHHHHHHHHHHHHSCTTTG-GGTTS-EEECSSSEEEESSCGGGSTTCTTCCC----------------------
T ss_pred cccccchhHHHHHHHHHHHhcchhh-hcCCc-eeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccc
Confidence 44667778877764 111 14443 7999999999999999 44445666665 22221
Q ss_pred ---CCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCCh-----HHHHHHHHHHHhcCCCCc---cccc-CccccCCCC
Q 002287 300 ---QGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAP-----QEALQVLDIVLRELPTTR---YCPV-GRSFYSPDL 367 (942)
Q Consensus 300 ---~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~-----~~~lq~Lniilr~~~~~~---~~~~-Gr~ff~~~~ 367 (942)
.....+++.|+|+|++++++++.+|.+||.+...+.+ .+++++|++||.+.+... ..++ +++||..+.
T Consensus 169 ~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~ 248 (1046)
T 4f1n_A 169 QKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNN 248 (1046)
T ss_dssp ---------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECST
T ss_pred cccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCC
Confidence 0123567889999999999999999999999865432 578999999999854322 2444 556874332
Q ss_pred -CCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeecc-----------------ccHHHHHHHHhcCCC------
Q 002287 368 -GRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP-----------------LPVIDFVQQLLNRDV------ 423 (942)
Q Consensus 368 -~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~-----------------~~lld~~~~~~~~~~------ 423 (942)
....+|++|+|+|+|||+|||+++++|+||||+++++||+. ++|+|+|.++++..+
T Consensus 249 ~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~ 328 (1046)
T 4f1n_A 249 FAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIR 328 (1046)
T ss_dssp TCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSS
T ss_pred CCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhcccccccccc
Confidence 24678999999999999999999999999999999999985 799999999886211
Q ss_pred ----CCCCCChHHH-------HHHHHHccceEEEEeecC-------C-----ccceEEEecccCCCCcceeeeecCC---
Q 002287 424 ----SSRPLSDADR-------VKIKKALRGVRVEVTHRG-------N-----MRRKYRISGLTSQTTGELTFPVDES--- 477 (942)
Q Consensus 424 ----~~~~l~~~~~-------~~i~~~LkGl~V~~~y~~-------~-----~~r~y~I~~i~~~~a~~~tF~~~~~--- 477 (942)
..+.++..++ .+++++||||+|+++|.+ . ..+.|+|.+|+..++.+++|++++.
T Consensus 329 ~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~ 408 (1046)
T 4f1n_A 329 YNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLK 408 (1046)
T ss_dssp CTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---------
T ss_pred ccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCccc
Confidence 1223333344 789999999999999974 1 1357999999999999999987532
Q ss_pred ----------CcEeeHHHHHHHHcCCcccCCCCceEEecCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCCc
Q 002287 478 ----------GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP 547 (942)
Q Consensus 478 ----------G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P 547 (942)
+++|||+|||+++|||+|+||+||||++|+. .+|||||||.|+|||+|+++|++ +++||++||.+|
T Consensus 409 ~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP 484 (1046)
T 4f1n_A 409 KNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRP 484 (1046)
T ss_dssp --------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCH
T ss_pred ccccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCc
Confidence 1579999999999999999999999999874 37999999999999999999987 479999999999
Q ss_pred hHHHHHHHHHHH-----hccCCCChhhhccCeEecCcceEeeeEEeCCCceeeccCCCc-------cccCCCCccccccC
Q 002287 548 HERERDIMQTVH-----HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKE-------KDCLPQVGQWNMMN 615 (942)
Q Consensus 548 ~~R~~~i~~~~~-----~~~~~~~~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~~~~-------~~~~p~~g~Wn~~~ 615 (942)
.+|++.|.+.+. .+.++.+++|++|| +|+.+|++|+|||||||.|.|++.... ..+.+++|+|||++
T Consensus 485 ~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~ 563 (1046)
T 4f1n_A 485 TEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKG 563 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTT
T ss_pred HHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCC
Confidence 999999998752 24456788999999 999999999999999999999864211 01346789999999
Q ss_pred ceeeeCce-eceeEEEEeC-C-c----chhHHHHHHHHHHHHHHHhcCcccCCC--CccC---------CCCC-------
Q 002287 616 KKMVNGGT-VNHWICINFS-R-H----VQDSIARGFCFELAQMCYISGMAFNPE--PVIP---------PISA------- 670 (942)
Q Consensus 616 ~kf~~~~~-l~~W~vv~~~-~-~----~~~~~~~~F~~~L~~~~~~~Gm~i~~~--p~i~---------~~~~------- 670 (942)
++|++++. +.+|.+|++. . + ...+.+..|++.|++.|+.+||.+..+ |.+. +...
T Consensus 564 ~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~ 643 (1046)
T 4f1n_A 564 HQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGG 643 (1046)
T ss_dssp CCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC------------
T ss_pred CEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccccccccc
Confidence 99999874 5667665442 1 1 234678999999999999999999763 4221 0000
Q ss_pred -------------------CchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCC-CCcchhhhhhhhhhccCceeeeee
Q 002287 671 -------------------RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCL 730 (942)
Q Consensus 671 -------------------~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~-~~~~Y~~IK~~~e~~~gI~TQci~ 730 (942)
..++.+..|.++++. + .+++|||||||++ +.++|+.||++||+++||+||||+
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~ 716 (1046)
T 4f1n_A 644 RGSRGGRGGRGAPSGPPTFETSPGEISLLNLLEN----I---PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVV 716 (1046)
T ss_dssp ----------------CCCBCCTTHHHHHHHHHT----C---CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred cccccccccccccccccccccchHHHHHHHHHHh----c---CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEe
Confidence 002334555555442 2 4689999999998 678999999999999999999999
Q ss_pred eccccccchHHHHHHHHHHhhhcCccccccccccccCCCcc----CCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCC
Q 002287 731 TKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLV----SDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP 806 (942)
Q Consensus 731 ~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~----~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~ 806 (942)
.+++.|.++||++|||||||+||||+||.|++.. ++.+ +..+|||||+||+|++++ ..+||||||||+| .
T Consensus 717 ~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~ 790 (1046)
T 4f1n_A 717 WDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-D 790 (1046)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-S
T ss_pred hhhhccccHHHHHHHHHHHHHhcCCeeeeccccc---cccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-C
Confidence 9999999999999999999999999999997541 2332 235799999999995433 2469999999999 8
Q ss_pred CccceeEEEEeccC-chhHHHHH-------HHHhcCC-C--Cc---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhC---
Q 002287 807 EVTKYAGLVCAQAH-RQELIQDL-------FKTWQDP-G--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLE--- 869 (942)
Q Consensus 807 ~~~ky~~~~~~Q~~-~~EiI~~l-------~~~~~~~-~--~P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~--- 869 (942)
++++|.+.+++|.+ ++|+|++| ++.|++. + .| ||||||||||||++|+++||++|++||.++.
T Consensus 791 ~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~ 870 (1046)
T 4f1n_A 791 KFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQL 870 (1046)
T ss_dssp SCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHH
T ss_pred CcCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999998 88888765 3345543 2 25 9999999999999999999999999999885
Q ss_pred ---CCCCCCEEEEEEeecccccccccCCCCCC------ccCCCCCCcCceeecccccCCCcccEEEeecCCccccccc-c
Q 002287 870 ---PNYQPPVTFVVVQKRHHTRLFANNHHDRN------AVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-R 939 (942)
Q Consensus 870 ---~~y~Pkit~Ivv~Krh~tRff~~~~~~~~------~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~ 939 (942)
++|+|+||||||+||||||||+.+.++.+ +.++++||+||||||++||||.+||||||||+++|||||| +
T Consensus 871 ~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPth 950 (1046)
T 4f1n_A 871 NGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCH 950 (1046)
T ss_dssp HTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEE
T ss_pred ccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcccCcE
Confidence 57999999999999999999997543211 0123789999999999999999999999999999999995 8
Q ss_pred cc
Q 002287 940 FC 941 (942)
Q Consensus 940 y~ 941 (942)
|+
T Consensus 951 Y~ 952 (1046)
T 4f1n_A 951 YW 952 (1046)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=3.8e-81 Score=750.01 Aligned_cols=597 Identities=14% Similarity=0.151 Sum_probs=433.1
Q ss_pred EeeeEEeecCC-CceeeeEEEecC--CCCchhhHHHHHHHHHHHHHhhccCCccceEeccceEEecCCCCCCcceEEEEE
Q 002287 217 KANHFFAELPD-KDLHQYDVTITP--EVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITL 293 (942)
Q Consensus 217 ~tN~f~v~~~~-~~iy~YdV~i~p--e~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~~~Lys~~~L~~~~~~f~v~l 293 (942)
..|.|+++... .+-| .| |.| |+...++++.-|...+. .| .+.|-...-.|++.+... .++-++.
T Consensus 6 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~--~~~~~~~ 72 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTF--TV-FKPTHEIQKEKLNKVRWRVFLQ------TG--LPTFRREDEFWCAGKVEK--DTLYLTL 72 (706)
T ss_dssp EESEEEEEECCSSCEE--BC-CEESSCCCHHHHHHHHHHHHHH------HC--SCEEEETTEEEESSCCTT--CCCEEEE
T ss_pred hhhhheeeeccCCcee--Ee-ecchHHHHHHhhhheeeEeeee------cC--Cccccccccceecccccc--ceEEEEc
Confidence 35888887652 2211 11 223 34444555544443332 12 356777778999988753 2333443
Q ss_pred ecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhcCCCCcccccCccccCCCCCCcccC
Q 002287 294 LDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPL 373 (942)
Q Consensus 294 ~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~~~~~~~~~~Gr~ff~~~~~~~~~l 373 (942)
.++ . +|+|+++.+++. ..-..+.+++|+++++++.+ .+++..+||+||++. ....+
T Consensus 73 ~~~----------~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~i 128 (706)
T 1yvu_A 73 SNG----------E--IVELKRVGEEEF---------RGFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKITV 128 (706)
T ss_dssp CSS----------S--CEEEEECCCEEC---------CCCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHEE
T ss_pred CCC----------C--EEEEEEEEEeec---------cCCCCCHHHHHHHHHHHHHc-CChHhhhCccccCcc--ccccc
Confidence 221 1 567999888751 01134688999999999998 566778999999876 23444
Q ss_pred ---CCCeEEeeeeeeeeeecc-ceeEEEEecceeeeeccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEee
Q 002287 374 ---GEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTH 449 (942)
Q Consensus 374 ---~~gle~w~G~~~Sir~~~-~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y 449 (942)
.++||+|+||.+||+..+ ++++||+|++|+ |++..||+|+|.+ +... . ..+..+|
T Consensus 129 ~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~~------~-------------~~~~~~y 187 (706)
T 1yvu_A 129 QGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDFN------P-------------KRIRVKP 187 (706)
T ss_dssp ECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCCC------C-------------TTCEEEE
T ss_pred cCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHH-hhhc------c-------------hhHHhhc
Confidence 567999999999999998 999999999998 9999999999998 3311 0 1344677
Q ss_pred cCCccceE--EEecc-cCCCCcceeeeecCCCcEeeHHHHHHHHcCCc--------ccCCCCceEEecCCCCCccccccc
Q 002287 450 RGNMRRKY--RISGL-TSQTTGELTFPVDESGTLKSVVEYFYETYGFV--------IQHTQWPCLQVGNQQRPNYLPMEV 518 (942)
Q Consensus 450 ~~~~~r~y--~I~~i-~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~--------L~~p~lP~l~~g~~~k~~ylP~El 518 (942)
+ +++| +|++| +|+.++.++|. + |..+| ||+++|++. .+.+.+|+++.+. +. .|+++
T Consensus 188 ~---n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~--~~--~p~~l 254 (706)
T 1yvu_A 188 I---GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLKNRELREKAFLVVLEKG--YT--YPATI 254 (706)
T ss_dssp T---TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTS--CE--EEGGG
T ss_pred c---cceeccccCcccccCCCcceEec-C--CCCcc---eEecccCcchhhhhccccccCCceEEeccC--CC--CCcee
Confidence 6 5778 99998 99999999996 2 56688 999988766 4455666665543 21 24444
Q ss_pred eeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCChhhhccCeEecCcceEeeeEEeCCCceeeccC
Q 002287 519 CKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDT 598 (942)
Q Consensus 519 c~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~ 598 (942)
|... -+..+|+++|+++|+++|+.+|++|++.|.++++.+ +++|++|||+|+++|++|+|||||+|+|.+...
T Consensus 255 L~pl---c~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g 327 (706)
T 1yvu_A 255 LKPV---LTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKG 327 (706)
T ss_dssp EEEC---CCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSC
T ss_pred eccc---cccCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCC
Confidence 4321 133489999999999999999999999999998764 578999999999999999999999999986432
Q ss_pred CCccccCCCCccccccCceeeeCceece---eEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhH
Q 002287 599 GKEKDCLPQVGQWNMMNKKMVNGGTVNH---WICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 675 (942)
Q Consensus 599 ~~~~~~~p~~g~Wn~~~~kf~~~~~l~~---W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~ 675 (942)
.......+..+.|++. ++|+.++.++. |.++ +..+ +..++.|++.|.+.|+.+||+++.++.......+.+
T Consensus 328 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~~--~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~-- 401 (706)
T 1yvu_A 328 KNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKKL--EWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTRE-- 401 (706)
T ss_dssp CEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTT--
T ss_pred CcceeccCCccccccc-CceecccccccceEEEEE-ecch--hHHHHHHHHHHHHHHHHcCceecCCccccccchhHH--
Confidence 1111122334566655 46888889999 9555 4322 236899999999999999999976433222222333
Q ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEEecCC-------CCcchhhhhhhhhhccCceeeeeeecccccc-chHHHHHHHH
Q 002287 676 EKVLKTRYHDAMTKLGQGKELDLLIVILPDN-------NGSLYGDLKRICETDLGLVSQCCLTKHVFKM-SKQYMANVAL 747 (942)
Q Consensus 676 ~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~-------~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~-~~q~~~NI~l 747 (942)
+.++.+..... ...++||||||+|++ +.++|+.||++|+ ++||+||||..+|+.+. ..|++.||+|
T Consensus 402 -~~~~~l~~~~~----~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~l 475 (706)
T 1yvu_A 402 -EAKEKLIPVIN----KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAE 475 (706)
T ss_dssp -HHHHHHHHHHT----TTSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHH
T ss_pred -HHHHHHHHHhc----ccCCCcEEEEEECCccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHH
Confidence 33443332221 125799999999998 7789999999965 89999999999999874 5799999999
Q ss_pred HHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCC--ccceeEEEEeccCchhHH
Q 002287 748 KINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE--VTKYAGLVCAQAHRQELI 825 (942)
Q Consensus 748 KiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~--~~ky~~~~~~Q~~~~EiI 825 (942)
|||+||||+||.|... ...+|||||+||+|++.+. ..||++|+|||+| .. +++|.+....| .++|++
T Consensus 476 kiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~ 544 (706)
T 1yvu_A 476 QVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLT 544 (706)
T ss_dssp HHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHH
T ss_pred HHHHHhCCeeeeeccC--------CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEeccc-ccchHH
Confidence 9999999999998642 2368999999999997433 3599999999998 54 57777776544 478888
Q ss_pred HHHH----HHhcC-----CCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCC
Q 002287 826 QDLF----KTWQD-----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHD 896 (942)
Q Consensus 826 ~~l~----~~~~~-----~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~ 896 (942)
++|. +.|++ |.++||||||||| ++|+++|++||.+ |.|+||||||+||||||||+.+
T Consensus 545 ~~l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~--- 610 (706)
T 1yvu_A 545 EKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE--- 610 (706)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC---
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECCC---
Confidence 8754 33542 2334999999999 9999999999987 5799999999999999999842
Q ss_pred CCccCCCCCCcCceeecccccCCCcccEEEeecCC-ccccccc-ccc
Q 002287 897 RNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQVSYFL-RFC 941 (942)
Q Consensus 897 ~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~-~qGTsrp-~y~ 941 (942)
||+||||||. ..+||||+||++ +|||+|| +|+
T Consensus 611 --------np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~ 644 (706)
T 1yvu_A 611 --------KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVR 644 (706)
T ss_dssp --------SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEE
T ss_pred --------CCCCeEEEEc-----CCCeEEEEecCCccCCCCCCEEEE
Confidence 6999999994 468899988776 9999996 775
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=6e-72 Score=668.99 Aligned_cols=594 Identities=13% Similarity=0.098 Sum_probs=411.2
Q ss_pred cceEEeeeEEeec---CCCceeeeEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEeccc-eEEecCCCCCCcce
Q 002287 213 RCIVKANHFFAEL---PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRK-SLYTAGPLPFLSKE 288 (942)
Q Consensus 213 ~v~l~tN~f~v~~---~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~~-~Lys~~~L~~~~~~ 288 (942)
++.|.+|||+|.. ++ .||+|+|+|+|+++.+ ++..++.++. + .+| ..+|||.. .||+..+|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~~----~-~~g--~~~fdg~~~~l~~~~~l~~---- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRLA----Y-ENV--GIVIDPENLIIATTKELEY---- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHHH----H-HTT--EEEEETTTTEEEESSCCCC----
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHHH----h-hcC--cEEecCcceeeeccceecc----
Confidence 5789999999976 45 9999999999999877 5555555443 3 256 35899964 2999988851
Q ss_pred EEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhc-CCCCc-----ccccCccc
Q 002287 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRE-LPTTR-----YCPVGRSF 362 (942)
Q Consensus 289 f~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~-~~~~~-----~~~~Gr~f 362 (942)
..+.++|+|+++.+++ +|++|+|+|. +.+++ +..+||+|
T Consensus 70 ----------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~ 114 (771)
T 1u04_A 70 ----------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKF 114 (771)
T ss_dssp ----------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTT
T ss_pred ----------------CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHHhhhc
Confidence 2335777877765543 7899999998 44455 77899999
Q ss_pred cCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeeccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccc
Q 002287 363 YSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (942)
Q Consensus 363 f~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkG 442 (942)
|++. .+ ..+++|+|+.+||+..|++++|++|++|+ +.+..||+|+|.++. ...+++...+.|
T Consensus 115 ~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hk-v~r~~t~~d~~~~~~-----------~~~~~~~~~~~g 176 (771)
T 1u04_A 115 RKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQ-IQSMKTLWELVNKDP-----------KELEEFLMTHKE 176 (771)
T ss_dssp SCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEE-EEESSCHHHHTTTCH-----------HHHHHHHHHSTT
T ss_pred CCCc-----cc-cccEEEECceeeEEecCCceEEEEEeeee-EeehhHHHHHHHHHH-----------HHHHHHHHhccC
Confidence 9872 22 35899999999999999999999999998 689999999987542 245566778889
Q ss_pred eEEEEe--------ecCCccceEEEecccCCCCcce--ee---eecCCC-cEeeHHHHHHHHcCCcccCCCCceEEecCC
Q 002287 443 VRVEVT--------HRGNMRRKYRISGLTSQTTGEL--TF---PVDESG-TLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508 (942)
Q Consensus 443 l~V~~~--------y~~~~~r~y~I~~i~~~~a~~~--tF---~~~~~G-~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~ 508 (942)
..|.+. |.-+ +++|+|++ +++..+.+ +| ..+ +| ..+++.+||+++|++ ++++||+|+...+
T Consensus 177 ~~~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~ 251 (771)
T 1u04_A 177 NLMLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIE-RYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFA 251 (771)
T ss_dssp TCEEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHCS--CCTTSCEEEEEES
T ss_pred cEEeeeccccceeEeecc-cceeecCC-ccccCCCChhheeceeec-CCCCCcchhHHHHHhcCc--CcCCCCeEEecch
Confidence 888887 7211 56777776 66555555 55 532 11 346777888899995 9999999998653
Q ss_pred C-------CCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhc-----cCC--CChhhhccCe
Q 002287 509 Q-------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHN-----AYH--EDPYAREFGI 574 (942)
Q Consensus 509 ~-------k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~-----~~~--~~~~l~~fGi 574 (942)
+ +.+||.||||.++. ..++++.+.|++|..+|...|.+|.+.|.++++.+ .-+ ..+.|+.|+
T Consensus 252 ~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~- 327 (771)
T 1u04_A 252 SKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ- 327 (771)
T ss_dssp CC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-
T ss_pred hhccCCCCceeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHhhhh-
Confidence 2 46899999999995 56688889999999999999999999999999887 222 124566776
Q ss_pred EecCcceEeeeEEeCCCceeeccCCCccccCCCCcccc--ccCceeeeCce----ece------eEEEEeCCcchhHHHH
Q 002287 575 KISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGT----VNH------WICINFSRHVQDSIAR 642 (942)
Q Consensus 575 ~I~~~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn--~~~~kf~~~~~----l~~------W~vv~~~~~~~~~~~~ 642 (942)
.++.. +.|.++++.+-.|.+.+. .....++|. +++.+++.+.. +++ |+++ .+++ .+.+.
T Consensus 328 ~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~~--~~~~~ 398 (771)
T 1u04_A 328 ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSGL--LADIQ 398 (771)
T ss_dssp GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETTS--CHHHH
T ss_pred ccCcC-cccccccccccceeecCc-----CCCccCCcchhhCCCcceecccchhhhhcccccceEEEE-eCCc--hHHHH
Confidence 57655 776665555433443321 123468995 56777765543 444 6665 4443 45677
Q ss_pred HHH---------HHHHHHHHhcCcc---------cCCCCccCCCCC---------CchhHHHHHHHHHHHHHhhcCCCCC
Q 002287 643 GFC---------FELAQMCYISGMA---------FNPEPVIPPISA---------RPEHVEKVLKTRYHDAMTKLGQGKE 695 (942)
Q Consensus 643 ~F~---------~~L~~~~~~~Gm~---------i~~~p~i~~~~~---------~~~~~~~~l~~~~~~a~~~~~~~~~ 695 (942)
+|+ +.|.+++..++|. ++. |...+.+. +.+.++..++.++++ +. ...
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~-p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~----~~-~~~ 472 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGL-PFLDFRGKEKVITEDLNSDKGIIEVVEQVSSF----MK-GKE 472 (771)
T ss_dssp HHHHHHHHHHHHHHCC------------------------------CEEEEECTTSHHHHHHHHHHHHHH----HT-TCS
T ss_pred HHHHHHhhhHHHHHHHHHhhcccchhhcccccccccC-CCcccccCcceecccccchHHHHHHHHHHHHh----cc-CCC
Confidence 777 4455544333332 322 21111111 124556666665543 22 256
Q ss_pred ceEEEEEe-cCCCCcchhhhhhhhhhccCceeeeeeecccccc----c-----hHHHHHHHHHHhhhcCccccccccccc
Q 002287 696 LDLLIVIL-PDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM----S-----KQYMANVALKINVKVGGRNTVLVDAIS 765 (942)
Q Consensus 696 ~qlvl~il-p~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~----~-----~q~~~NI~lKiN~KLGG~n~~l~~~~~ 765 (942)
++||||++ +.++.+.|+.||++| +++||+||||..+|+.+. . .+++.||+||||+||||+||.|+.
T Consensus 473 ~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~--- 548 (771)
T 1u04_A 473 LGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY--- 548 (771)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC---
T ss_pred CCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC---
Confidence 89987777 455567999999998 799999999999998643 2 778999999999999999999853
Q ss_pred cCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchh-----HHHHHHHHhcCC--C-C
Q 002287 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE-----LIQDLFKTWQDP--G-T 837 (942)
Q Consensus 766 ~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E-----iI~~l~~~~~~~--~-~ 837 (942)
| ..++||||+||+|++++ ..+++++|+|+|.| .+..+|.+.+..|...++ ++..++..|++. . .
T Consensus 549 ---p---~~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E~i~l~~~l~~~L~~y~~~n~~~l 620 (771)
T 1u04_A 549 ---R---FNYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLD 620 (771)
T ss_dssp ---C---CSSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCT
T ss_pred ---C---CCCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEEEEEEEEeecCCccEEcHHHHHHHHHHHHHHHhCCCC
Confidence 2 25899999999998654 34688899999999 778888876554544333 455556666543 1 3
Q ss_pred c---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecc
Q 002287 838 P---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDS 914 (942)
Q Consensus 838 P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~ 914 (942)
| ||||||+ |+++|+++|++||.++ .|+||||+|+|||||||| .+ .+||||||
T Consensus 621 P~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------------~~pGTVV~- 675 (771)
T 1u04_A 621 NKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------------MKMYFNLG- 675 (771)
T ss_dssp TCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC------------SCEEEEET-
T ss_pred CCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeee-cC------------CCCeeEEe-
Confidence 5 9999997 7899999999999875 589999999999999999 21 25899993
Q ss_pred cccCCCcccEEEeecC--Cccccccc-cc
Q 002287 915 KICHPTEFDFYLCSHA--GIQVSYFL-RF 940 (942)
Q Consensus 915 ~It~p~~~DFyL~Sh~--~~qGTsrp-~y 940 (942)
. |||||||. ++|||++| .|
T Consensus 676 ------~-DFyL~Sh~v~~~qGTprPthY 697 (771)
T 1u04_A 676 ------G-AIYLIPHKLKQAKGTPIPIKL 697 (771)
T ss_dssp ------T-EEEEECSCCSSSCSCCCCEEE
T ss_pred ------C-CEEEEeccccCCCCCCCCEEE
Confidence 3 99999995 56999996 66
No 5
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=2.7e-72 Score=642.79 Aligned_cols=311 Identities=28% Similarity=0.509 Sum_probs=214.2
Q ss_pred ccCceeee-CceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCc---cCCCCCCchhHHHHHHHHHHHHHh
Q 002287 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV---IPPISARPEHVEKVLKTRYHDAMT 688 (942)
Q Consensus 613 ~~~~kf~~-~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~---i~~~~~~~~~~~~~l~~~~~~a~~ 688 (942)
|++++|++ ++++++|+|++|+.+.+...++.|++.|.+.|+.+||.+..+.. +.....+ ++.+ .++++..
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~----~~~~--~~~~~~~ 75 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGS----EKEF--FAKVKEL 75 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSS----HHHH--HHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCch----HHHH--HHHHhhc
Confidence 46789999 78999999999954334567899999999999999999976421 1111112 3333 2222211
Q ss_pred hcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchH--HHHHHHHHHhhhcCcccccccccccc
Q 002287 689 KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISR 766 (942)
Q Consensus 689 ~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q--~~~NI~lKiN~KLGG~n~~l~~~~~~ 766 (942)
..++||||||||+++.++|+.||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++.
T Consensus 76 ----~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~--- 148 (437)
T 2yhb_A 76 ----MSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP--- 148 (437)
T ss_dssp ----HHTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC---
T ss_pred ----cCCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc---
Confidence 137999999999998889999999999999999999999999988888 99999999999999999999753
Q ss_pred CCCccCCCCeEEEEEeecCCC---CC--CCCCCcEEEEEEecCCCCccceeEEEEecc-CchhHHHHHHHH-------hc
Q 002287 767 RIPLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKT-------WQ 833 (942)
Q Consensus 767 ~iP~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~EiI~~l~~~-------~~ 833 (942)
+|++.+.+|||||+||+||+ |+ ....|||||||||+| .++++|.+.+++|. +++|+|++|.++ |+
T Consensus 149 -~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~ 226 (437)
T 2yhb_A 149 -IPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWR 226 (437)
T ss_dssp -CHHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHH
Confidence 45555689999999999998 76 346799999999999 99999999999999 999999886543 65
Q ss_pred C---CC--Cc---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEeecccccccccCCCCCCccC-CC
Q 002287 834 D---PG--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANNHHDRNAVD-RS 903 (942)
Q Consensus 834 ~---~~--~P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y-~Pkit~Ivv~Krh~tRff~~~~~~~~~~d-~~ 903 (942)
+ .+ .| ||||||||||||.+|+++|+++|++||.++.++| +|+||||||+||||||||+.+..+ .| ++
T Consensus 227 ~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~---~~~~~ 303 (437)
T 2yhb_A 227 SNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKH---IHFKS 303 (437)
T ss_dssp TCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------
T ss_pred hhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCccc---ccccc
Confidence 5 22 25 9999999999999999999999999999998888 899999999999999999987653 23 78
Q ss_pred CCCcCceeecccccCCCcccEEEeecCCccccccc-ccc
Q 002287 904 GNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 904 ~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~y~ 941 (942)
+||+||||||++||||.+||||||||.++|||||| +|+
T Consensus 304 ~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~ 342 (437)
T 2yhb_A 304 KSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYT 342 (437)
T ss_dssp ------------------------------------CEE
T ss_pred CCCCCceEecccccCCCCceEEEEecccccccCCceEEE
Confidence 99999999999999999999999999999999995 886
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.2e-62 Score=578.98 Aligned_cols=580 Identities=16% Similarity=0.140 Sum_probs=402.0
Q ss_pred cceEEeeeEEee-cC--CCceeeeEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEeccceEEecCCCCCCcceE
Q 002287 213 RCIVKANHFFAE-LP--DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEF 289 (942)
Q Consensus 213 ~v~l~tN~f~v~-~~--~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~~~Lys~~~L~~~~~~f 289 (942)
++.|.-|-|.|+ +. +.+.|.|+|.++|..+..+. ..++..++.+ +|.. .+==| ..|.|.++ |. ...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~-~~~~~-~~~~~~~~-~~-~~~~ 75 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEV-YPLLAQVARR-----AGGV-TVRMG-DGLASWSP-PE-VLVL 75 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTH-HHHHHHHHHH-----TCSS-EEEET-TEEEESSC-TT-TSCC
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchH-HHHHHHHHHH-----hCCe-EEeec-CceecccC-ch-hhhc
Confidence 578999999996 55 67899999999987664443 3334444432 3442 12223 35777765 32 1112
Q ss_pred EEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHH-----HHHHhcCCCCcccccCccccC
Q 002287 290 RITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVL-----DIVLRELPTTRYCPVGRSFYS 364 (942)
Q Consensus 290 ~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~L-----niilr~~~~~~~~~~Gr~ff~ 364 (942)
+=++.. .+....+++.-.=.+.+|..+ +..+++|..| +-.|+.. ..+..-|.-.+-
T Consensus 76 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 136 (685)
T 3ho1_A 76 EGTLAR-------MGQTYAYRLYPKGRRPLDPKD----------PGERSVLSALARRLLQERLRRL--EGVWVEGLAVYR 136 (685)
T ss_dssp EEEEEC-------SSCEEEEEEEEEEECCCCTTS----------HHHHHHHHHHHHHHHHHHHHTC--SSSEEETTEEEE
T ss_pred cchhcc-------ccCCcceeeeecccccCCCCC----------hHHHHHHHHHHHHHHHHHHHhh--hceEEccEEEEe
Confidence 222221 134445666665555666432 1234555444 3333434 222222222221
Q ss_pred CCCCCcccCCCCeEEeeeeeeeeeecc-ceeEEEEecceeeeeccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccce
Q 002287 365 PDLGRRQPLGEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGV 443 (942)
Q Consensus 365 ~~~~~~~~l~~gle~w~G~~~Sir~~~-~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl 443 (942)
.. . .-+.|.|+++|+...|.++. ++++|.||+.+. |+++.++.+++.+.. . |- .
T Consensus 137 ~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~------------------~-~~-~ 191 (685)
T 3ho1_A 137 RE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH------------------P-LP-K 191 (685)
T ss_dssp EE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC------------------C-CC-S
T ss_pred ec---C-CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCC------------------C-cc-H
Confidence 11 1 22789999999999999997 899999999998 999999999998732 1 33 5
Q ss_pred EEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHHHHcCCcccCCCCceEEecCC----CC-----Cccc
Q 002287 444 RVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ----QR-----PNYL 514 (942)
Q Consensus 444 ~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~----~k-----~~yl 514 (942)
.|.++|+ .++|+|.+|+ +.++++.|-. + .||++|||+++|.+ +.-++|+|+...+ .+ .+||
T Consensus 192 ~v~~~y~---~~~~~~~~~~-~~~p~~~~l~---~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~l 261 (685)
T 3ho1_A 192 RVRNAYD---RRTWELLRLG-EEDPKELPLP---G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGLL 261 (685)
T ss_dssp EEEESSS---CCEECCCEEE-CCCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTSE
T ss_pred HHhhhcc---cceEEEeecc-cCCchheecC---C-CccHHHHHhhcccc--cccCCceEEEEeccccCCCcceeeeeee
Confidence 8999998 6899999999 5678888852 2 69999999999887 8899998875432 11 3589
Q ss_pred cccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCChhhhccCeEecCcceEeeeEEeCCCcee
Q 002287 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLK 594 (942)
Q Consensus 515 P~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~arvLp~P~i~ 594 (942)
.|||| +. + |++.+.. .+|...|++|++.|.++++. ++++|||+ +.+|++|+||+||||+|
T Consensus 262 ~p~l~-m~-~------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I- 321 (685)
T 3ho1_A 262 VPVLT-LE-D------LHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL- 321 (685)
T ss_dssp EEECC-TT-T------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE-
T ss_pred chHhH-HH-H------Hhhhhhh---ccccCCHHHHHHHHHHHHHH-------HHHhcCCC-CCCcceEEEEEcCHHHh-
Confidence 99999 44 2 3222211 68999999999999999765 47899998 99999999999999999
Q ss_pred eccCCCccccCCCCccccccCceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchh
Q 002287 595 YHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 674 (942)
Q Consensus 595 y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~ 674 (942)
+++. . + ...|++.+.+|+.++.. .|+++++... ...+++|++.|.+.|+.+||+|.. |.... .+++
T Consensus 322 ~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~-~~~~~---~~~d 387 (685)
T 3ho1_A 322 MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRL-HTLHA---HPSQ 387 (685)
T ss_dssp ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEE-EECCC---CGGG
T ss_pred cCCC-C---c---CCchhhccCcceeccCc-eEEEEeccCc--hHHHHHHHHHHHHHHHhCCcEecc-ceeec---CCCc
Confidence 7642 1 1 23577777788887765 6999988653 245779999999999999999975 43222 1221
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcC
Q 002287 675 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVG 754 (942)
Q Consensus 675 ~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLG 754 (942)
.. .+...+++..+ .++||||||+|+++.+.|+.||++| .++||+||||. +++.|...+++.||+||||+|||
T Consensus 388 ~~-~~~~~l~~~~~-----~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLG 459 (685)
T 3ho1_A 388 GL-AFREALRKAKE-----EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAG 459 (685)
T ss_dssp TH-HHHHHHHHHHH-----TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHhhh-----cCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhC
Confidence 11 23333333221 5799999999999888999999886 79999999999 88877778999999999999999
Q ss_pred ccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCC-CCccceeEEEEeccCchhHHHHHH----
Q 002287 755 GRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLF---- 829 (942)
Q Consensus 755 G~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~-~~~~ky~~~~~~Q~~~~EiI~~l~---- 829 (942)
|+||.|+. |. .++||||+||+|++ ..++++++++++- ....+| ..+..|.+.++.+++|.
T Consensus 460 G~pW~L~~------P~---~~tmiIGiDVsH~~-----~~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L~~~l~ 524 (685)
T 3ho1_A 460 LQVVALSG------AY---PAELAVGFDAGGRE-----SFRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVVWDLLE 524 (685)
T ss_dssp CCCCEECS------CC---SCSEEEEEEEEETT-----EEEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHHHHHHH
T ss_pred CeeEEecC------CC---CCeEEEEEEEEcCC-----CCccceEEEEEECCCCEEEe-EEEEccCCcEecHHHHHHHHH
Confidence 99999864 32 68999999999986 2355555555440 344443 23455655544444443
Q ss_pred ---HHhcC-----CCCcEEEcCCC-CchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCcc
Q 002287 830 ---KTWQD-----PGTPYIFPDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAV 900 (942)
Q Consensus 830 ---~~~~~-----~~~PIiYRDGV-sEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~ 900 (942)
+.|++ |.++||||||| +|+||.+ |++||.++ .+++|||||+||||+|||+.+
T Consensus 525 eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~~--------I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n------- 585 (685)
T 3ho1_A 525 ETLWAFRRKAGRLPSRVLLLRNGRVPQDEFAL--------ALEALARE----GIAYDLVSVRKSGGGRVYPVQ------- 585 (685)
T ss_dssp HHHHHHHHHHSSCCSEEEEEECSSSCSGGGHH--------HHHHHHHT----TCEEEEEEEESSCCCCEEESS-------
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHH--------HHHHHHhc----CCCEEEEEEEecCCceEecCC-------
Confidence 33543 33449999999 8887654 56788776 478999999999999999963
Q ss_pred CCCCCCcCceeecccccCCCcccEEEeec--CCccccccc-ccc
Q 002287 901 DRSGNILPGTVVDSKICHPTEFDFYLCSH--AGIQVSYFL-RFC 941 (942)
Q Consensus 901 d~~~N~~pGTVVD~~It~p~~~DFyL~Sh--~~~qGTsrp-~y~ 941 (942)
.+|.+||+|+ ..+||||++| +++|||++| +|+
T Consensus 586 ---~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~ 620 (685)
T 3ho1_A 586 ---GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV 620 (685)
T ss_dssp ---SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE
T ss_pred ---CCCCCeEEEe------CCCCEEEEEecCCCCccCCceEEEE
Confidence 2567777774 3456655554 469999996 664
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=2.6e-53 Score=479.89 Aligned_cols=257 Identities=28% Similarity=0.504 Sum_probs=212.3
Q ss_pred ccCceeee-CceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCc---cCCCCCCchhHHHHHHHHHHHHHh
Q 002287 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV---IPPISARPEHVEKVLKTRYHDAMT 688 (942)
Q Consensus 613 ~~~~kf~~-~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~---i~~~~~~~~~~~~~l~~~~~~a~~ 688 (942)
|++++|++ ++++++|+|++|..+.+.+.++.|++.|.+.|+.+||.+..+.. +...+.. ++.+ .++++..
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~----~~~~--~~~~~~~ 75 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGS----EKEF--FAKVKEL 75 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSS----HHHH--HHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCch----HHHh--HHHHhhc
Confidence 56789999 78999999999954334567899999999999999999977421 1111112 3333 2222211
Q ss_pred hcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchH--HHHHHHHHHhhhcCcccccccccccc
Q 002287 689 KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISR 766 (942)
Q Consensus 689 ~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q--~~~NI~lKiN~KLGG~n~~l~~~~~~ 766 (942)
..++||||||||+++.++|+.||++||+++||+||||+.+|+.|.++| |++||+||||+||||+||.|++.
T Consensus 76 ----~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~--- 148 (388)
T 2yha_A 76 ----MSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP--- 148 (388)
T ss_dssp ----HHTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC---
T ss_pred ----cCCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc---
Confidence 137999999999998889999999999999999999999999988888 99999999999999999999753
Q ss_pred CCCccCCCCeEEEEEeecCCC---CC--CCCCCcEEEEEEecCCCCccceeEEEEecc-CchhHHHHHHHH-------hc
Q 002287 767 RIPLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKT-------WQ 833 (942)
Q Consensus 767 ~iP~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~EiI~~l~~~-------~~ 833 (942)
+|++.+.+|||||+||+||+ |+ ....|||||||||+| .++++|.+.+++|. +++|+|++|.++ |+
T Consensus 149 -~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~ 226 (388)
T 2yha_A 149 -IPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWR 226 (388)
T ss_dssp -CHHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHH
Confidence 45555689999999999998 77 446799999999999 99999999999999 999999886544 54
Q ss_pred C---CC--Cc---EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEeec
Q 002287 834 D---PG--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKR 884 (942)
Q Consensus 834 ~---~~--~P---IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y-~Pkit~Ivv~Kr 884 (942)
+ .+ .| ||||||||||||.+|+++|+++|++||.++..+| +|+||||||+||
T Consensus 227 ~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr 286 (388)
T 2yha_A 227 SNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG 286 (388)
T ss_dssp HSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC--
T ss_pred HhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc
Confidence 4 22 35 9999999999999999999999999999998888 899999999999
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=1.9e-36 Score=346.70 Aligned_cols=292 Identities=13% Similarity=0.036 Sum_probs=183.7
Q ss_pred EeCCCceeec--cCCCcc---ccCCCCccccccCceeeeCcee--ceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCccc
Q 002287 587 ILPAPWLKYH--DTGKEK---DCLPQVGQWNMMNKKMVNGGTV--NHWICINFSRHVQDSIARGFCFELAQMCYISGMAF 659 (942)
Q Consensus 587 vLp~P~i~y~--~~~~~~---~~~p~~g~Wn~~~~kf~~~~~l--~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i 659 (942)
-|..|.+.|+ ++.+.. ...+..| +.+...+....+ .+|+||+..+..+ .++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~--~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS--LINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH--HHHHHHHHHHHHH-HHTTCC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcccHH--HHHHHHHhhhhcC-CCceee
Confidence 4667788888 322100 1111111 333344554333 6899997655432 3444444433322 244444
Q ss_pred CCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEe--------cCCCCcchhhhhhhhhhccCceeeeeee
Q 002287 660 NPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVIL--------PDNNGSLYGDLKRICETDLGLVSQCCLT 731 (942)
Q Consensus 660 ~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~il--------p~~~~~~Y~~IK~~~e~~~gI~TQci~~ 731 (942)
.. +. .+.+.+.+++++.+. .++|++|||+ |+++.+.|. +|+ +++++||+||||+.
T Consensus 79 ~~-~~-----~~~~~y~~~i~~~l~---------~~~~lvlvilp~~~~~~~~~~~~~~y~-~K~-~~~~~gvptQ~I~~ 141 (427)
T 2w42_A 79 HN-IN-----ISEFIYDSPHFDSIK---------SQVDNAIDTGVDGIMLVLPEYNTPLYY-KLK-SYLINSIPSQFMRY 141 (427)
T ss_dssp CS-CE-----EEEEECSSSSHHHHH---------HHHHHHHHHCCSEEEEEESSCCHHHHH-HHH-HHHHTTSCEEEEEG
T ss_pred cC-Cc-----CChHHHHHHHHHHhc---------CCCCEEEEEEEccccccCCCCCcchHH-HHH-HHhCCCcCcEEEEh
Confidence 32 11 122333333333322 2478999999 666555454 785 66899999999999
Q ss_pred ccccccch-HHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccc
Q 002287 732 KHVFKMSK-QYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK 810 (942)
Q Consensus 732 ~t~~K~~~-q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~k 810 (942)
+|+.+.+. .++.||+||||+||||+||.|+.. .|. .++||||+||+|++++ +++|++.++| .+...
T Consensus 142 ~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~ 208 (427)
T 2w42_A 142 DILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTM 208 (427)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCE
T ss_pred hhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCE
Confidence 99986664 458899999999999999998642 122 5799999999998753 5676655445 44444
Q ss_pred eeEEEEeccCchhHHHHHHH-------HhcC-CC--Cc-----EEEcCCCCchhHHHHHHHHHHHHHHHHHhhCC----C
Q 002287 811 YAGLVCAQAHRQELIQDLFK-------TWQD-PG--TP-----YIFPDGVSEGQFYQVLLYELDAIRKACASLEP----N 871 (942)
Q Consensus 811 y~~~~~~Q~~~~EiI~~l~~-------~~~~-~~--~P-----IiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~----~ 871 (942)
+...+..|.+.+|++++|.. .|++ .+ .| ||| |||.+|+++|+++|++||.++.. +
T Consensus 209 ~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~ 282 (427)
T 2w42_A 209 LWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVS 282 (427)
T ss_dssp EEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccC
Confidence 45555666677898887643 3554 22 23 454 89999999999999999999864 7
Q ss_pred CCCCEEEEEEeeccc-ccccccCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCccc
Q 002287 872 YQPPVTFVVVQKRHH-TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQV 934 (942)
Q Consensus 872 y~Pkit~Ivv~Krh~-tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qG 934 (942)
|+|+||||+|+|||| +|||..+. .+||+||||||.+ ++|||++|.+.|+
T Consensus 283 ~~~~l~~IvV~Kr~~~~r~f~~~~--------~~nP~~GTvVd~~------~~~~l~~~~g~q~ 332 (427)
T 2w42_A 283 RDVKYAILHLNETHPFWVMGDPNN--------RFHPYEGTKVKLS------SKRYLLTLLQPYL 332 (427)
T ss_dssp TTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC---
T ss_pred CCCCEEEEEEEccccceeeecCCC--------CCCCCCceEEEcC------CCeEEEEEEeeec
Confidence 999999999999999 89885431 3599999999973 5677777777776
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.96 E-value=9.1e-30 Score=249.55 Aligned_cols=146 Identities=88% Similarity=1.424 Sum_probs=131.2
Q ss_pred CceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCC
Q 002287 615 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 694 (942)
Q Consensus 615 ~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~ 694 (942)
+++|++++++++|+||+|+++.+++.+++|++.|.+.|+.+||.+..+|.+.....+++++++.|+++++++.+++..+.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 57899999999999999987776788999999999999999999998777766667789999999999887765542135
Q ss_pred CceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCcccccc
Q 002287 695 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (942)
Q Consensus 695 ~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l 760 (942)
++||||||||+++.++|+.||++||+++||+||||+.+|+.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 799999999999888999999999999999999999999999899999999999999999999864
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.95 E-value=6.7e-29 Score=240.88 Aligned_cols=138 Identities=57% Similarity=1.003 Sum_probs=122.8
Q ss_pred CceeeeCceeceeEEEEeCCcchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCC
Q 002287 615 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 694 (942)
Q Consensus 615 ~~kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~ 694 (942)
+++|++++++++|+|++|+++.+.+.+++|++.|.+.|+.+||.+.++|.+.....+++++++.|+++++++ .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~-------~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA-------P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC-------T
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc-------C
Confidence 579999999999999999755667889999999999999999999887766554456788888888776542 4
Q ss_pred CceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCcccccc
Q 002287 695 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (942)
Q Consensus 695 ~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l 760 (942)
++||||||||+++.+ |+.||++||+++||+||||+.+|+.|.++||++||+||||+||||+||.|
T Consensus 75 ~~qlv~~ilp~~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPDVTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCSSSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECCCCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 699999999999888 99999999999999999999999999899999999999999999999864
No 11
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.95 E-value=1.5e-28 Score=239.24 Aligned_cols=138 Identities=25% Similarity=0.500 Sum_probs=98.7
Q ss_pred eccccHHHHHHHHhcC-CCCCCCCChHHHHHHHHHccceEEEEeecC---CccceEEEecccCCCCcceeeeecCCCcEe
Q 002287 406 IEPLPVIDFVQQLLNR-DVSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 481 (942)
Q Consensus 406 ~~~~~lld~~~~~~~~-~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~---~~~r~y~I~~i~~~~a~~~tF~~~~~G~~i 481 (942)
++++||+|||+++++. +...+...+.++.+++++|+|++|.++|.+ +.+|+|+|++|++.++++++|+++ |.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcC--CCEE
Confidence 5789999999999843 221223447788999999999999999953 257999999999999999999853 6799
Q ss_pred eHHHHHHHHcCCcccCCCCceEEecCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCC
Q 002287 482 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (942)
Q Consensus 482 SV~~Yf~~~Y~i~L~~p~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~ 546 (942)
||+|||+++ |++|+||+||||+++++.+++|||||||.|++||+++++|+++|+++||++||.+
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHc-CCCCCCCCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhcC
Confidence 999999998 9999999999999999889999999999999999999999999999999999863
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.94 E-value=2.3e-27 Score=229.93 Aligned_cols=135 Identities=29% Similarity=0.521 Sum_probs=115.6
Q ss_pred CceeeeCceeceeEEEEeCC--cchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCC
Q 002287 615 NKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQ 692 (942)
Q Consensus 615 ~~kf~~~~~l~~W~vv~~~~--~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~ 692 (942)
+++|++++++++|+|++|+. +++++.+++|++.|.+.|+.+||.+..+|.+.....++++++..|+.+.+. .
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~----~-- 75 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT----Y-- 75 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHH----C--
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhc----C--
Confidence 57899999999999999863 256788999999999999999999987776655445567777777765432 1
Q ss_pred CCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCccc
Q 002287 693 GKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 757 (942)
Q Consensus 693 ~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n 757 (942)
.++||||||||+ +.++|+.||++||+++||+||||+.+|+.|.++||++||+||||+||||+|
T Consensus 76 -~~~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 76 -AGLQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp -TTCCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred -CCCcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 469999999997 568999999999999999999999999999899999999999999999987
No 13
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.94 E-value=2.2e-27 Score=233.45 Aligned_cols=143 Identities=34% Similarity=0.577 Sum_probs=109.1
Q ss_pred CceeeeCceeceeEEEEeCCcch-hHHHHHHHHHHHHHHHhcCcccCCCCccCC-C----CCCchhHHHHHHHHHHHHHh
Q 002287 615 NKKMVNGGTVNHWICINFSRHVQ-DSIARGFCFELAQMCYISGMAFNPEPVIPP-I----SARPEHVEKVLKTRYHDAMT 688 (942)
Q Consensus 615 ~~kf~~~~~l~~W~vv~~~~~~~-~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~-~----~~~~~~~~~~l~~~~~~a~~ 688 (942)
+++|++++++++|+|++|++... .+.+++|++.|.+.|+.+||.+++ |.+.. . ..+++++++.|+++++++.+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~-P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEA-PIVYKTSRMETLSNGNAIEELLRSVIDEASR 80 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECC-CSEEEECCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCC-CceeeccccccccCchHHHHHHHHHHHHHHH
Confidence 57899999999999999975421 126889999999999999999986 54421 1 24678888999999887765
Q ss_pred hcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCcccccc
Q 002287 689 KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (942)
Q Consensus 689 ~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l 760 (942)
++. +..+||||||||+++. .|+.||++||+++||+||||+.+|+.|.++||++||+||||+||||+||.|
T Consensus 81 ~~~-~~~pqlv~~ilp~~~~-~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 81 KHG-GARPTLVLCAMSRKDD-GYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp HTT-TCCCCEEEEEESSCCT-HHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred hcC-CCCCcEEEEEECCCCc-cHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 542 2368999999999885 599999999999999999999999999999999999999999999999864
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.91 E-value=3e-25 Score=217.65 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHH
Q 002287 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEY 486 (942)
Q Consensus 407 ~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Y 486 (942)
+++||+|+|.++++.. ..+.++.+++++|+|++|.++|+ +++|+|++|+++++++++|++. +|..+||+||
T Consensus 1 r~~tvld~~~~~~~~~-----~~~~~~~~~~~~l~g~~V~t~y~---nr~yrI~~i~~~~~p~~~F~~~-~g~~~T~~eY 71 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQT-----EEHKFQEQVSKELIGLIVLTKYN---NKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEY 71 (150)
T ss_dssp CCCBHHHHHHHHHHHS-----CHHHHHHHHHHHHTTCEEEETTT---TEEEECCEEETTCCTTCCCCSS-SSCCCCHHHH
T ss_pred CCccHHHHHHHHHccc-----cchHHHHHHHHHhCCcEEEEeeC---CceEEeeecCCCCCccCeeecC-CCceeeHHHH
Confidence 4689999999988631 22456889999999999999997 6999999999999999999864 4678999999
Q ss_pred HHHHcCCcccCCCCceEEecCCC---------CCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHH
Q 002287 487 FYETYGFVIQHTQWPCLQVGNQQ---------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT 557 (942)
Q Consensus 487 f~~~Y~i~L~~p~lP~l~~g~~~---------k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~ 557 (942)
|+++||++|+||+||||+++.+. +++|||||||.|++ -....+-+.+.|++|+++|+..|.+|++.|.++
T Consensus 72 f~~~Y~i~i~~~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-L~d~~rs~~~~mk~l~~~t~~~P~~R~~~i~~f 150 (150)
T 2xfm_A 72 YRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-LTDKMRNDFNVMKDLAVHTRLTPEQRQREVGRL 150 (150)
T ss_dssp HHTTCCCCCCCSSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-TTC------------------------------
T ss_pred HHHHcCCccCCCCCCeEEecccccccccccccceEEecHHHhccCC-CCHHHHhhHHHHHHHHHHHccCHHHHHHHHhcC
Confidence 99999999999999999998642 67999999999993 222222233346679999999999999988653
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.91 E-value=4.9e-25 Score=208.11 Aligned_cols=118 Identities=29% Similarity=0.554 Sum_probs=99.1
Q ss_pred ccccHHHHHHHHhcCC--CCCCCCChHHHHHHHHHccceEEEEeecC---CccceEEEecccCCCCcceeeeecCCCcEe
Q 002287 407 EPLPVIDFVQQLLNRD--VSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 481 (942)
Q Consensus 407 ~~~~lld~~~~~~~~~--~~~~~l~~~~~~~i~~~LkGl~V~~~y~~---~~~r~y~I~~i~~~~a~~~tF~~~~~G~~i 481 (942)
+++||+|||++++... +..+.| +.++.+++++|+||+|.++|.+ ..+|+|+|++|++.+|++++|+++ |+++
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l-~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~--g~~i 77 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNL-DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 77 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCG-GGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS--SSEE
T ss_pred CCccHHHHHHHHhhhcccccccCC-HHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC--CcEE
Confidence 4689999999997532 223556 5678899999999999999952 357999999999999999999863 7899
Q ss_pred eHHHHHHHHcCCcccCCCCceEEecCCCCCccccccceeecCCcccc
Q 002287 482 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYS 528 (942)
Q Consensus 482 SV~~Yf~~~Y~i~L~~p~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~ 528 (942)
||+|||+++ |++|+||+||||++++..+++|||||||.|+|||+++
T Consensus 78 sV~~Yf~~~-~~~l~~p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~ 123 (124)
T 3mj0_A 78 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALN 123 (124)
T ss_dssp EHHHHHHTT-TCCCSCSSSEEEECCBTTBCCEECGGGEEEEC-----
T ss_pred EHHHHHHHc-CCcccCCCCCeEeecCCCCceEecceeEEECCCCccC
Confidence 999999998 9999999999999998888999999999999999985
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.91 E-value=4.4e-25 Score=214.28 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=92.8
Q ss_pred ccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHH
Q 002287 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEY 486 (942)
Q Consensus 407 ~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Y 486 (942)
+..||+|+|.++.... ...++.+++++|+|+.|.+.|+ +++|+|++|+|+.++.++|+.. +|..+||+||
T Consensus 1 r~~tvld~m~~~~~~~------~~~~~~~~~k~l~g~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~-dg~~iT~~eY 70 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQN------KEHFQDECTKLLVGNIVITRYN---NRTYRIDDVDWNKTPKDSFTMS-DGKEITFLEY 70 (148)
T ss_dssp -CCCHHHHHHHHHHHH------HHHHHHHHHHHHTTCEEEETTT---CCEEECCEEETTCCTTSEEECT-TSCEEEHHHH
T ss_pred CcchHHHHHHHHHhhC------cHHHHHHHHHHcCCCEEEEccC---CcEEEEeeecCCCCcCccccCC-CCCcccHHHH
Confidence 3579999999886431 1467889999999999999997 6899999999999999999864 4789999999
Q ss_pred HHHHcCCcccCCCCceEEecCCC----------CCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHH
Q 002287 487 FYETYGFVIQHTQWPCLQVGNQQ----------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDI 554 (942)
Q Consensus 487 f~~~Y~i~L~~p~lP~l~~g~~~----------k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i 554 (942)
|+++|||+|+||+||||+++.+. +++|||||||.++ |.....+.+.++|++|+++|+..|.+|.+.|
T Consensus 71 f~~kY~i~I~~~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~lt-gLtd~~r~d~~~mk~l~~~tr~~P~~R~~~l 147 (148)
T 3qir_A 71 YSKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMT-GIPEKMKKDFRAMKDLAQQINLSPKQHHSAL 147 (148)
T ss_dssp HHHHHCCCCSCTTCCEEEECCTTCCCC---CCSCCEEECGGGEECC--------------------------------
T ss_pred HHHHcCCeecCCCCceEEeecccccCCCCCCccceeeecHHHhhhc-CCCHHHHhhhHHHHHHHHHHCCCHHHHHHhh
Confidence 99999999999999999998643 5799999999999 6777778888889999999999999998866
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.84 E-value=3.8e-21 Score=180.77 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=91.6
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHH
Q 002287 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (942)
Q Consensus 409 ~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~ 488 (942)
.||+|+|.++.... -...++.+++++|+|+.|.+.|+ +++|+|++|+|+.++.++|+.. +|..+||+|||+
T Consensus 2 ~tvld~~~~~~~~~-----~~~~~~~~~~k~l~G~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~-dg~~~T~~eYyk 72 (124)
T 3o7v_X 2 ETVLDFMFNFYHQT-----EEHKFQEQVSKELIGLVVLTKYN---NKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEYYR 72 (124)
T ss_dssp CBHHHHHHHSCCCS-----SHHHHHHHHHHHHTTCEEEETTS---SCEEECCEEETTCCTTCEEECT-TSCEEEHHHHHH
T ss_pred ccHHHHHHHHHHhc-----ccHHHHHHHHHHcCCCEEEEeeC---CeEEEEeeeCCCCCccCcccCC-CCCeeeHHHHHH
Confidence 68999999875321 12567889999999999999998 6899999999999999999853 478999999999
Q ss_pred HHcCCcccCCCCceEEecCCC---------CCccccccceeec
Q 002287 489 ETYGFVIQHTQWPCLQVGNQQ---------RPNYLPMEVCKIV 522 (942)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~---------k~~ylP~Elc~i~ 522 (942)
++|||+|+||+||||+++.+. +++|||||||.++
T Consensus 73 ~kY~i~I~~~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~lt 115 (124)
T 3o7v_X 73 KQYNQEITDLKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLT 115 (124)
T ss_dssp HHHCCCCCCSSCCEEEECCC----------CCEEECGGGEECC
T ss_pred HHhCceecCCCcceEEEeeecccCCCCCCcceEEechhheecc
Confidence 999999999999999997543 5799999999999
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.82 E-value=9.5e-21 Score=224.04 Aligned_cols=131 Identities=27% Similarity=0.506 Sum_probs=103.7
Q ss_pred ecceeeeeccccHHHHHHHHhcCCCCC-CCCChHHHHHHHHHccceEEEEeecCC---ccceEEEecccCCCCcceeeee
Q 002287 399 DMSSTAFIEPLPVIDFVQQLLNRDVSS-RPLSDADRVKIKKALRGVRVEVTHRGN---MRRKYRISGLTSQTTGELTFPV 474 (942)
Q Consensus 399 D~s~~~F~~~~~lld~~~~~~~~~~~~-~~l~~~~~~~i~~~LkGl~V~~~y~~~---~~r~y~I~~i~~~~a~~~tF~~ 474 (942)
+...+.|+++++|+|+|.+++.....+ ....+..+.+++++||||+|+++|.++ .+|.|+|.+|+..++.+.+|++
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 445667999999999999997433321 122344556799999999999999754 5889999999998899999987
Q ss_pred cCCCcEeeHHHHHHHHcCCcccCCCCceEEecCCCCCccccccceeecCCcccccCCC
Q 002287 475 DESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLN 532 (942)
Q Consensus 475 ~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~~kl~ 532 (942)
+ +++|||+|||+ +|||+|+||+||||++++.++++|||||||.|++||||+.||+
T Consensus 455 ~--~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 D--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp T--TEEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred C--CeEEEHHHHHH-HcCCcccCCCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 4 68999999999 8999999999999999988899999999999999999998874
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.70 E-value=7.4e-09 Score=125.36 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=72.5
Q ss_pred HHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCCCcEeeHHHHHHHHcCCcccCCCCceEEecCC------
Q 002287 435 KIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ------ 508 (942)
Q Consensus 435 ~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~G~~iSV~~Yf~~~Y~i~L~~p~lP~l~~g~~------ 508 (942)
.+.+.|+|..|.+.|++ +|+|+|++|+++.++.++|+.. +..+|+.|||+++||++|++++||+|++...
T Consensus 151 ~~~~~l~g~vV~t~ynn--~r~Y~i~~id~d~~P~S~F~~~--~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~ 226 (756)
T 2qvw_A 151 TLSASLHGRMVATPEIS--WSLYVVLGIDSTQTSLSYFTRA--NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDH 226 (756)
T ss_dssp -CTTTSTTCEEEETTTT--TEEEEEEEEEEEEETTSEEEET--TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTC
T ss_pred hhHHHhCCCEEecCCCC--ceEEEEEEecCCCCCCCcCCCC--CCCCCHHHHHHHHcCcccccCCCCeEEEEeccccccc
Confidence 46679999999999982 3899999999999999999853 3679999999999999999999999998541
Q ss_pred ------------CCCccccccceeecC
Q 002287 509 ------------QRPNYLPMEVCKIVE 523 (942)
Q Consensus 509 ------------~k~~ylP~Elc~i~~ 523 (942)
.+.++||||||.+++
T Consensus 227 r~~~~~~~~~~~~~~v~L~PELC~vt~ 253 (756)
T 2qvw_A 227 QIPAPGSWDDLAPKLRFLPPELCLLLP 253 (756)
T ss_dssp CCCSTTC-CCSCSSCEEECTTTCEECC
T ss_pred ccccccccccCCccceeeCHHHheeec
Confidence 124799999999984
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.10 E-value=2.1 Score=47.75 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=4.4
Q ss_pred eEEEEEeecC
Q 002287 776 TIIFGADVTH 785 (942)
Q Consensus 776 tmiiG~DVsH 785 (942)
.-|.=-|-.|
T Consensus 504 ~~iyEWDs~h 513 (551)
T 2b5u_A 504 RKIYEWDSQH 513 (551)
T ss_dssp TEEEEEETTT
T ss_pred CeeeeccccC
Confidence 3444444444
No 21
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.73 E-value=2 Score=47.91 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.6
Q ss_pred eEeccc
Q 002287 269 AYDGRK 274 (942)
Q Consensus 269 ~yDG~~ 274 (942)
+.||+.
T Consensus 189 v~DGvQ 194 (551)
T 2b5u_A 189 VKDERQ 194 (551)
T ss_dssp ESSSCE
T ss_pred eccCcE
Confidence 344443
No 22
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=30.00 E-value=34 Score=32.63 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred EEEcCCCCchhHHHHHHHHHHH----HHHHHHhhCC----CCCCCEEEEEEeeccc
Q 002287 839 YIFPDGVSEGQFYQVLLYELDA----IRKACASLEP----NYQPPVTFVVVQKRHH 886 (942)
Q Consensus 839 IiYRDGVsEgQf~~Vl~~Ev~~----Ik~a~~~l~~----~y~Pkit~Ivv~Krh~ 886 (942)
+||.|.++|.+.......|+.. +++++..|.. =|.-.+|+||..+..+
T Consensus 64 vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 64 RIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp EEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSS
T ss_pred EEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCc
Confidence 9999999998665555555544 6677777743 3788999988765443
No 23
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=20.63 E-value=21 Score=35.56 Aligned_cols=81 Identities=33% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC--CCCCCCCCCC
Q 002287 49 TGYQGSGRGWGPPSQQGGRGGY--GGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGG-YGGGRGG--VGMGSGGRGG 123 (942)
Q Consensus 49 ~~~~~~g~~~~~~~~~gg~gg~--~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~g~--~g~~~~~~~~ 123 (942)
+++...+++.-++.+..+.+.+ .++++++..++++++.+.+ |+.+.+.+++.|. .+||+|+ .|++++.+|.
T Consensus 9 ~~g~~~~~~~yp~~~~~~~~~yp~q~gg~~g~p~~gg~g~p~g----gg~g~p~~gg~gqp~ggGyg~p~~G~~~g~gG~ 84 (219)
T 1dx0_A 9 GGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHG----GGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGT 84 (219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCC
Q 002287 124 HSGGPTRSSQ 133 (942)
Q Consensus 124 ~~~~~~~~~~ 133 (942)
.+....|+..
T Consensus 85 ~~q~~kp~k~ 94 (219)
T 1dx0_A 85 HGQWNKPSKP 94 (219)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
No 24
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=20.19 E-value=2.4e+02 Score=29.91 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.2
Q ss_pred CCCceEEEEEecCCC-CcchhhhhhhhhhccCceeeeeeeccccccchHHHHHHHHHHhh--hcCccccc
Q 002287 693 GKELDLLIVILPDNN-GSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV--KVGGRNTV 759 (942)
Q Consensus 693 ~~~~qlvl~ilp~~~-~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~--KLGG~n~~ 759 (942)
+..|.|.++++-++- +..|-..|...+.+.||.+..+....- ....-+.+.+.++|. ..-|+-.+
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~--~se~ell~~I~~LN~D~~V~GIlVQ 118 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQE--TTTEQLLAEIEKLNANPDVHGILLQ 118 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCcc--CCHHHHHHHHHHhcCCCCccEEEEe
Confidence 356889888886653 457999998888999999988765321 234556777788875 35565443
Done!