Query 002289
Match_columns 941
No_of_seqs 859 out of 6922
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 100.0 2.7E-52 9.4E-57 454.3 19.8 262 609-888 13-292 (299)
2 4aoj_A High affinity nerve gro 100.0 9.7E-52 3.3E-56 456.2 23.9 262 609-888 41-322 (329)
3 4fih_A Serine/threonine-protei 100.0 4.9E-52 1.7E-56 457.8 20.6 264 609-932 74-338 (346)
4 4gt4_A Tyrosine-protein kinase 100.0 1.1E-51 3.8E-56 451.4 19.5 257 610-884 27-305 (308)
5 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.8E-51 6E-56 446.6 18.4 259 609-927 32-300 (311)
6 3omv_A RAF proto-oncogene seri 100.0 6.1E-51 2.1E-55 443.6 22.2 268 605-889 32-304 (307)
7 4fie_A Serine/threonine-protei 100.0 7.9E-51 2.7E-55 459.0 22.5 265 608-932 150-415 (423)
8 3ubd_A Ribosomal protein S6 ki 100.0 8.4E-52 2.9E-56 449.3 8.8 270 609-940 24-304 (304)
9 4g3f_A NF-kappa-beta-inducing 100.0 4.5E-50 1.5E-54 440.9 21.9 256 608-885 57-316 (336)
10 4b9d_A Serine/threonine-protei 100.0 1.7E-50 5.7E-55 446.3 18.2 251 609-879 24-277 (350)
11 3fpq_A Serine/threonine-protei 100.0 2.4E-50 8.3E-55 435.7 19.0 253 612-924 29-289 (290)
12 3hyh_A Carbon catabolite-derep 100.0 8.7E-51 3E-55 435.3 14.7 253 609-925 13-270 (275)
13 4ase_A Vascular endothelial gr 100.0 2.9E-49 9.8E-54 439.9 21.2 272 599-887 54-349 (353)
14 4f9c_A Cell division cycle 7-r 100.0 8.9E-49 3E-53 438.9 17.1 304 606-923 18-358 (361)
15 4b99_A Mitogen-activated prote 100.0 2.1E-48 7.3E-53 440.4 17.0 287 609-924 54-351 (398)
16 4g31_A Eukaryotic translation 100.0 5.1E-48 1.7E-52 421.3 17.2 263 609-925 5-287 (299)
17 3hmm_A TGF-beta receptor type- 100.0 2.2E-47 7.6E-52 418.3 19.8 261 609-885 3-297 (303)
18 3v5w_A G-protein coupled recep 100.0 3.7E-46 1.3E-50 438.8 17.5 272 608-940 188-472 (689)
19 3uto_A Twitchin; kinase, muscl 100.0 2.1E-45 7.2E-50 436.3 20.0 260 608-926 156-419 (573)
20 3fe3_A MAP/microtubule affinit 100.0 1.2E-42 4E-47 386.2 20.0 260 608-930 14-277 (328)
21 3fxz_A Serine/threonine-protei 100.0 7.4E-42 2.5E-46 374.8 24.3 261 608-928 19-280 (297)
22 3uim_A Brassinosteroid insensi 100.0 4.6E-42 1.6E-46 381.6 22.6 284 593-882 14-308 (326)
23 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-42 9.6E-47 380.9 19.8 281 31-325 2-287 (313)
24 2qkw_B Protein kinase; three-h 100.0 9.2E-42 3.1E-46 378.4 23.8 278 601-886 31-316 (321)
25 3niz_A Rhodanese family protei 100.0 2.3E-42 7.8E-47 381.5 18.2 277 607-924 19-307 (311)
26 4dc2_A Protein kinase C IOTA t 100.0 1.4E-42 4.8E-47 393.9 16.6 280 608-940 51-341 (396)
27 3txo_A PKC-L, NPKC-ETA, protei 100.0 8.7E-43 3E-47 390.9 14.5 203 607-821 21-228 (353)
28 3v8s_A RHO-associated protein 100.0 1.9E-42 6.4E-47 395.1 16.3 281 601-940 61-352 (410)
29 1o6l_A RAC-beta serine/threoni 100.0 5.2E-42 1.8E-46 382.1 18.9 202 608-821 4-209 (337)
30 4aw2_A Serine/threonine-protei 100.0 2.7E-42 9.1E-47 396.8 16.9 272 600-927 65-348 (437)
31 1fot_A TPK1 delta, CAMP-depend 100.0 3.5E-42 1.2E-46 380.6 16.2 199 608-821 5-207 (318)
32 3zgw_A Maternal embryonic leuc 100.0 2.2E-42 7.5E-47 386.3 14.2 258 607-925 8-268 (347)
33 2yab_A Death-associated protei 100.0 1.5E-41 5.2E-46 381.9 21.0 258 608-924 11-279 (361)
34 3o0g_A Cell division protein k 100.0 3.5E-42 1.2E-46 376.4 14.6 275 609-923 2-288 (292)
35 3a8x_A Protein kinase C IOTA t 100.0 6.9E-42 2.4E-46 382.7 17.3 200 608-819 8-212 (345)
36 2c30_A Serine/threonine-protei 100.0 2.9E-41 9.8E-46 374.3 21.8 272 597-928 23-305 (321)
37 1xjd_A Protein kinase C, theta 100.0 7.2E-42 2.5E-46 382.1 16.6 259 606-926 14-278 (345)
38 3llt_A Serine/threonine kinase 100.0 4.6E-42 1.6E-46 387.1 14.7 301 595-922 21-360 (360)
39 3gni_B Strad alpha; kinase fol 100.0 1.1E-41 3.8E-46 388.3 17.6 308 607-926 23-342 (389)
40 1ob3_A PFPK5, cell division co 100.0 5.9E-42 2E-46 373.8 14.5 274 609-923 2-286 (288)
41 2psq_A Fibroblast growth facto 100.0 8.3E-41 2.9E-45 378.0 23.9 263 608-888 80-367 (370)
42 2vd5_A DMPK protein; serine/th 100.0 2.1E-41 7.2E-46 386.6 17.3 212 600-821 52-274 (412)
43 3kul_A Ephrin type-A receptor 100.0 1E-40 3.5E-45 370.6 22.2 264 608-889 48-317 (325)
44 3oz6_A Mitogen-activated prote 100.0 3.6E-41 1.2E-45 383.9 18.9 305 607-924 7-335 (388)
45 1rdq_E PKA C-alpha, CAMP-depen 100.0 3.2E-41 1.1E-45 377.9 17.9 199 608-821 40-242 (350)
46 1tki_A Titin; serine kinase, m 100.0 2.3E-41 7.9E-46 374.9 16.4 259 608-925 4-265 (321)
47 3a62_A Ribosomal protein S6 ki 100.0 1.3E-41 4.4E-46 378.1 14.3 202 608-821 16-225 (327)
48 2pmi_A Negative RE, cyclin-dep 100.0 1.7E-41 5.7E-46 375.6 15.0 290 608-926 4-302 (317)
49 3g33_A Cell division protein k 100.0 1.1E-40 3.6E-45 367.5 20.5 281 607-925 7-304 (308)
50 4fr4_A YANK1, serine/threonine 100.0 2.6E-41 9E-46 382.2 16.0 199 608-819 14-219 (384)
51 1kob_A Twitchin; kinase, intra 100.0 1.5E-40 5.3E-45 377.1 22.4 260 608-926 50-313 (387)
52 3p86_A Serine/threonine-protei 100.0 1.4E-40 4.8E-45 366.7 21.0 267 602-886 30-299 (309)
53 2y0a_A Death-associated protei 100.0 8.2E-41 2.8E-45 371.5 19.3 259 608-925 10-279 (326)
54 2acx_A G protein-coupled recep 100.0 2.3E-41 7.8E-46 398.1 15.5 263 607-926 182-453 (576)
55 3ttj_A Mitogen-activated prote 100.0 3.6E-41 1.2E-45 391.8 16.9 284 608-923 61-361 (464)
56 3tki_A Serine/threonine-protei 100.0 3.1E-41 1.1E-45 374.3 15.3 261 608-925 6-269 (323)
57 2i0e_A Protein kinase C-beta I 100.0 6.5E-41 2.2E-45 375.5 17.6 203 607-821 18-225 (353)
58 2nru_A Interleukin-1 receptor- 100.0 3.4E-39 1.2E-43 355.1 30.5 280 595-884 11-305 (307)
59 4hcu_A Tyrosine-protein kinase 100.0 2.6E-40 8.9E-45 356.9 20.8 258 607-885 8-266 (269)
60 3s95_A LIMK-1, LIM domain kina 100.0 2.2E-40 7.7E-45 365.3 20.7 269 608-888 9-285 (310)
61 2bdw_A Hypothetical protein K1 100.0 9.7E-41 3.3E-45 376.1 17.7 257 608-923 28-290 (362)
62 3soa_A Calcium/calmodulin-depe 100.0 1.8E-40 6.1E-45 383.0 20.1 259 607-923 9-273 (444)
63 3c0i_A Peripheral plasma membr 100.0 5.1E-41 1.7E-45 377.1 14.7 259 608-923 23-292 (351)
64 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.7E-40 5.7E-45 358.1 18.2 258 607-885 6-264 (268)
65 3ugc_A Tyrosine-protein kinase 100.0 1.9E-40 6.5E-45 363.1 18.8 271 607-887 8-293 (295)
66 3mtl_A Cell division protein k 100.0 7.8E-41 2.7E-45 371.4 15.8 285 609-927 2-291 (324)
67 4ejn_A RAC-alpha serine/threon 100.0 4.2E-41 1.4E-45 390.4 14.2 257 608-926 147-413 (446)
68 3h4j_B AMPK kdaid, SNF1-like p 100.0 8.2E-41 2.8E-45 372.1 15.7 254 608-925 8-266 (336)
69 1qcf_A Haematopoetic cell kina 100.0 8E-41 2.7E-45 388.7 16.3 265 601-886 180-445 (454)
70 3rp9_A Mitogen-activated prote 100.0 5.6E-41 1.9E-45 391.0 14.9 297 608-925 52-404 (458)
71 2w4o_A Calcium/calmodulin-depe 100.0 1.7E-40 5.9E-45 372.4 17.9 261 607-927 51-315 (349)
72 3cbl_A C-FES, proto-oncogene t 100.0 2.1E-40 7.1E-45 375.9 18.4 264 604-886 109-375 (377)
73 2x4f_A Myosin light chain kina 100.0 8.8E-41 3E-45 377.9 15.3 253 614-924 94-349 (373)
74 3c4z_A Rhodopsin kinase; Ser/T 100.0 8.5E-41 2.9E-45 392.5 15.7 203 608-820 184-392 (543)
75 2zv2_A Calcium/calmodulin-depe 100.0 2.4E-40 8.2E-45 362.9 18.2 254 608-922 12-297 (298)
76 3kn6_A Ribosomal protein S6 ki 100.0 3.7E-40 1.3E-44 366.0 19.9 259 614-926 16-279 (325)
77 3vhe_A Vascular endothelial gr 100.0 2.7E-40 9.2E-45 372.5 18.9 270 599-885 12-355 (359)
78 2r5t_A Serine/threonine-protei 100.0 5.4E-41 1.8E-45 378.9 12.9 202 608-821 37-243 (373)
79 1k9a_A Carboxyl-terminal SRC k 100.0 1.1E-39 3.6E-44 378.7 23.8 256 604-885 188-445 (450)
80 2qol_A Ephrin receptor; recept 100.0 4.4E-40 1.5E-44 372.3 20.1 261 608-886 44-310 (373)
81 2ac3_A MAP kinase-interacting 100.0 2E-40 6.9E-45 366.6 16.8 283 608-926 11-304 (316)
82 3gen_A Tyrosine-protein kinase 100.0 3.4E-40 1.2E-44 358.7 18.0 262 603-885 18-280 (283)
83 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.5E-40 8.5E-45 384.2 17.9 264 602-886 177-441 (452)
84 1luf_A Muscle-specific tyrosin 100.0 4.2E-40 1.5E-44 368.3 18.8 265 604-886 42-336 (343)
85 3gbz_A Kinase, CMGC CDK; ssgci 100.0 6.3E-41 2.2E-45 373.0 11.8 286 607-926 32-327 (329)
86 4eqm_A Protein kinase; transfe 100.0 9E-40 3.1E-44 357.6 20.7 257 608-885 10-275 (294)
87 3tt0_A Basic fibroblast growth 100.0 2.1E-39 7E-44 368.5 24.3 265 607-889 67-356 (382)
88 3uc3_A Serine/threonine-protei 100.0 1.4E-40 4.9E-45 374.7 14.5 260 607-924 18-281 (361)
89 3p1a_A MYT1 kinase, membrane-a 100.0 8.6E-41 2.9E-45 368.9 12.2 251 608-923 56-310 (311)
90 3kvw_A DYRK2, dual specificity 100.0 3.6E-40 1.2E-44 380.0 17.8 286 608-926 96-417 (429)
91 3f3z_A Calcium/calmodulin-depe 100.0 3.2E-40 1.1E-44 357.7 16.2 259 608-926 8-270 (277)
92 4agu_A Cyclin-dependent kinase 100.0 6.2E-40 2.1E-44 361.8 18.6 286 609-927 3-294 (311)
93 2a2a_A Death-associated protei 100.0 8.9E-40 3E-44 362.4 19.9 259 608-925 11-280 (321)
94 3soc_A Activin receptor type-2 100.0 9.7E-40 3.3E-44 362.3 20.2 268 606-886 21-319 (322)
95 3n9x_A Phosphotransferase; mal 100.0 3.1E-40 1.1E-44 381.3 16.8 301 608-926 25-370 (432)
96 2eue_A Carbon catabolite derep 100.0 2.4E-40 8.3E-45 358.4 14.8 253 609-925 13-270 (275)
97 2ivs_A Proto-oncogene tyrosine 100.0 1E-39 3.4E-44 360.4 19.9 263 605-885 19-311 (314)
98 1cm8_A Phosphorylated MAP kina 100.0 2.9E-40 1E-44 373.1 15.7 276 608-925 24-315 (367)
99 3lm5_A Serine/threonine-protei 100.0 7.6E-40 2.6E-44 363.9 18.7 278 597-931 16-301 (327)
100 3nsz_A CK II alpha, casein kin 100.0 1.5E-39 5.1E-44 361.9 20.9 280 608-925 35-327 (330)
101 3qd2_B Eukaryotic translation 100.0 6.2E-40 2.1E-44 364.8 17.8 262 608-923 5-331 (332)
102 1opk_A P150, C-ABL, proto-onco 100.0 4.1E-40 1.4E-44 386.6 16.8 262 603-884 214-477 (495)
103 3lb7_A RAF proto-oncogene seri 100.0 4.3E-39 1.5E-43 354.5 24.0 266 607-889 34-304 (307)
104 1mp8_A Focal adhesion kinase 1 100.0 1E-39 3.5E-44 354.7 18.7 259 606-885 12-276 (281)
105 3kfa_A Tyrosine-protein kinase 100.0 9E-40 3.1E-44 356.2 17.9 264 602-885 6-271 (288)
106 1qpc_A LCK kinase; alpha beta 100.0 1.1E-39 3.7E-44 354.0 18.4 265 603-888 7-272 (279)
107 3kk8_A Calcium/calmodulin depe 100.0 1.4E-39 4.8E-44 353.9 19.2 260 608-926 5-270 (284)
108 3mi9_A Cell division protein k 100.0 1.1E-39 3.6E-44 366.6 18.7 296 608-930 16-324 (351)
109 3l9p_A Anaplastic lymphoma kin 100.0 7.2E-40 2.5E-44 370.0 17.3 260 608-885 70-345 (367)
110 2eva_A TAK1 kinase - TAB1 chim 100.0 7.6E-39 2.6E-43 352.6 25.1 262 608-892 7-270 (307)
111 2izr_A Casein kinase I isoform 100.0 4.3E-39 1.5E-43 358.3 23.1 269 608-889 8-285 (330)
112 1csn_A Casein kinase-1; phosph 100.0 5.7E-39 2E-43 351.6 23.5 270 608-889 9-287 (298)
113 3t9t_A Tyrosine-protein kinase 100.0 1.5E-39 5.2E-44 350.2 18.6 258 607-885 6-264 (267)
114 3kmu_A ILK, integrin-linked ki 100.0 3.9E-39 1.3E-43 347.5 21.6 254 608-884 9-269 (271)
115 3dtc_A Mitogen-activated prote 100.0 3.7E-39 1.3E-43 348.1 21.4 253 608-882 6-270 (271)
116 3qup_A Tyrosine-protein kinase 100.0 1.3E-39 4.5E-44 361.2 18.4 265 603-885 17-298 (323)
117 3eqc_A Dual specificity mitoge 100.0 2.5E-40 8.5E-45 373.0 12.5 296 608-926 32-333 (360)
118 1ua2_A CAK, cell division prot 100.0 3.9E-40 1.3E-44 369.3 13.8 284 607-924 8-298 (346)
119 2qr7_A Ribosomal protein S6 ki 100.0 4E-40 1.4E-44 368.0 13.5 258 607-923 20-283 (342)
120 1t46_A HOMO sapiens V-KIT hard 100.0 4.7E-39 1.6E-43 354.9 21.9 267 604-887 18-309 (313)
121 3pfq_A PKC-B, PKC-beta, protei 100.0 1.4E-39 4.8E-44 394.7 19.3 272 607-940 339-620 (674)
122 2rku_A Serine/threonine-protei 100.0 8E-39 2.8E-43 350.0 23.4 257 608-926 14-274 (294)
123 3is5_A Calcium-dependent prote 100.0 1.2E-39 4.1E-44 355.0 16.7 257 608-923 21-284 (285)
124 1rjb_A FL cytokine receptor; k 100.0 4.5E-39 1.5E-43 360.3 21.8 268 603-887 39-336 (344)
125 3hko_A Calcium/calmodulin-depe 100.0 4.2E-40 1.4E-44 368.8 13.2 271 603-925 20-338 (345)
126 2fst_X Mitogen-activated prote 100.0 4.2E-40 1.4E-44 371.5 13.0 277 608-925 28-319 (367)
127 3rgf_A Cyclin-dependent kinase 100.0 5E-40 1.7E-44 376.6 13.8 295 609-926 20-342 (405)
128 1mqb_A Ephrin type-A receptor 100.0 8.1E-39 2.8E-43 356.6 23.2 277 608-910 43-326 (333)
129 2owb_A Serine/threonine-protei 100.0 2.3E-39 7.8E-44 361.4 18.7 257 608-926 40-300 (335)
130 2y94_A 5'-AMP-activated protei 100.0 5.2E-40 1.8E-44 381.6 13.9 201 608-821 15-220 (476)
131 2h8h_A Proto-oncogene tyrosine 100.0 6.8E-40 2.3E-44 388.2 15.1 264 601-885 259-523 (535)
132 3op5_A Serine/threonine-protei 100.0 3.8E-39 1.3E-43 363.9 20.5 278 607-892 33-336 (364)
133 2r3i_A Cell division protein k 100.0 8.4E-40 2.9E-44 358.5 14.5 283 609-923 3-289 (299)
134 3eb0_A Putative uncharacterize 100.0 1.5E-39 5E-44 369.9 17.0 281 605-923 3-327 (383)
135 1nxk_A MAP kinase-activated pr 100.0 9.9E-40 3.4E-44 372.9 15.7 196 609-820 61-266 (400)
136 3kex_A Receptor tyrosine-prote 100.0 2.1E-39 7.1E-44 360.1 17.8 258 608-885 12-276 (325)
137 1vzo_A Ribosomal protein S6 ki 100.0 4.8E-40 1.7E-44 369.7 12.8 201 608-819 53-264 (355)
138 4aaa_A Cyclin-dependent kinase 100.0 1.4E-39 4.8E-44 362.4 16.3 286 608-926 24-315 (331)
139 3pg1_A Mitogen-activated prote 100.0 1.2E-39 4.1E-44 367.7 15.9 291 600-926 13-325 (362)
140 3poz_A Epidermal growth factor 100.0 4.4E-39 1.5E-43 357.8 20.0 258 608-885 14-278 (327)
141 3cok_A Serine/threonine-protei 100.0 3.4E-39 1.2E-43 349.9 18.6 257 609-926 11-271 (278)
142 2xrw_A Mitogen-activated prote 100.0 2.2E-39 7.6E-44 366.7 17.8 285 608-924 24-325 (371)
143 3q4u_A Activin receptor type-1 100.0 5E-39 1.7E-43 352.6 20.0 256 608-883 7-300 (301)
144 1x8b_A WEE1HU, WEE1-like prote 100.0 2.5E-39 8.4E-44 352.2 17.4 252 608-925 10-287 (289)
145 4euu_A Serine/threonine-protei 100.0 2E-38 7E-43 351.1 24.6 265 608-883 8-307 (319)
146 2pvf_A Fibroblast growth facto 100.0 9E-39 3.1E-43 356.4 21.7 266 606-889 32-322 (334)
147 2jam_A Calcium/calmodulin-depe 100.0 2E-39 7E-44 356.5 16.1 201 607-821 7-211 (304)
148 1wak_A Serine/threonine-protei 100.0 8.1E-40 2.8E-44 373.6 13.4 198 608-820 36-296 (397)
149 3qyz_A Mitogen-activated prote 100.0 3.5E-39 1.2E-43 364.2 18.4 285 608-924 26-320 (364)
150 2xir_A Vascular endothelial gr 100.0 7.5E-39 2.6E-43 353.8 20.7 271 599-886 17-311 (316)
151 3dls_A PAS domain-containing s 100.0 1.9E-39 6.4E-44 361.8 15.8 200 607-819 22-232 (335)
152 2i1m_A Macrophage colony-stimu 100.0 7.4E-39 2.5E-43 356.8 20.1 266 603-885 40-326 (333)
153 2vx3_A Dual specificity tyrosi 100.0 6.4E-39 2.2E-43 364.5 19.5 202 606-822 51-263 (382)
154 3i6u_A CDS1, serine/threonine- 100.0 1.9E-39 6.6E-44 373.0 15.3 260 606-924 132-406 (419)
155 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-38 3.7E-43 353.2 20.8 272 609-890 30-315 (318)
156 3f66_A Hepatocyte growth facto 100.0 2.2E-38 7.4E-43 347.2 23.0 265 608-889 24-295 (298)
157 3ork_A Serine/threonine protei 100.0 8.9E-39 3E-43 352.7 19.5 260 608-883 11-279 (311)
158 3lxl_A Tyrosine-protein kinase 100.0 5.5E-39 1.9E-43 357.0 17.9 273 608-888 22-306 (327)
159 4f0f_A Serine/threonine-protei 100.0 2.9E-38 9.9E-43 344.2 23.2 254 608-882 18-286 (287)
160 4e5w_A Tyrosine-protein kinase 100.0 8.5E-39 2.9E-43 351.0 19.1 269 608-884 20-301 (302)
161 1p4o_A Insulin-like growth fac 100.0 3.7E-39 1.3E-43 357.4 16.2 267 599-883 15-297 (322)
162 4fvq_A Tyrosine-protein kinase 100.0 5.2E-39 1.8E-43 350.4 17.1 252 608-885 7-275 (289)
163 1u59_A Tyrosine-protein kinase 100.0 2.1E-38 7.2E-43 345.4 21.8 261 608-887 8-274 (287)
164 2jii_A Serine/threonine-protei 100.0 5.7E-39 2E-43 360.7 17.8 271 608-889 41-340 (352)
165 2y7j_A Phosphorylase B kinase 100.0 7.9E-39 2.7E-43 361.2 18.7 262 602-922 87-364 (365)
166 3cc6_A Protein tyrosine kinase 100.0 2.2E-38 7.4E-43 344.2 21.5 259 607-886 10-274 (281)
167 1j1b_A Glycogen synthase kinas 100.0 2.6E-39 9E-44 372.0 15.0 279 608-924 53-343 (420)
168 1z57_A Dual specificity protei 100.0 1E-38 3.4E-43 356.0 19.3 288 608-923 13-334 (339)
169 3c1x_A Hepatocyte growth facto 100.0 1.1E-38 3.8E-43 360.6 19.8 265 609-890 89-360 (373)
170 3brb_A Proto-oncogene tyrosine 100.0 9.3E-39 3.2E-43 352.8 18.7 270 602-889 27-312 (313)
171 2ozo_A Tyrosine-protein kinase 100.0 1.8E-38 6E-43 381.5 22.4 260 610-888 336-601 (613)
172 3og7_A AKAP9-BRAF fusion prote 100.0 2.2E-38 7.5E-43 345.7 21.0 262 606-884 21-287 (289)
173 2yex_A Serine/threonine-protei 100.0 1.6E-38 5.3E-43 344.0 19.6 263 608-927 6-271 (276)
174 4exu_A Mitogen-activated prote 100.0 5.1E-39 1.7E-43 363.7 16.2 278 608-924 41-330 (371)
175 4e7w_A Glycogen synthase kinas 100.0 7.9E-39 2.7E-43 364.9 17.8 281 608-926 39-330 (394)
176 1xbb_A Tyrosine-protein kinase 100.0 1.3E-38 4.3E-43 347.9 18.7 263 605-887 12-281 (291)
177 1t4h_A Serine/threonine-protei 100.0 2.2E-38 7.5E-43 345.8 20.6 256 609-924 26-289 (290)
178 1byg_A CSK, protein (C-termina 100.0 1E-38 3.5E-43 346.2 17.6 254 607-886 19-274 (278)
179 1blx_A Cyclin-dependent kinase 100.0 1.4E-38 4.8E-43 353.4 18.9 287 607-929 9-308 (326)
180 3lij_A Calcium/calmodulin depe 100.0 8.2E-39 2.8E-43 376.0 17.5 256 608-923 36-297 (494)
181 2b9h_A MAP kinase FUS3, mitoge 100.0 1.8E-38 6.2E-43 356.6 19.6 293 608-926 10-314 (353)
182 3pls_A Macrophage-stimulating 100.0 7.9E-38 2.7E-42 342.5 24.1 264 610-889 22-291 (298)
183 3q5i_A Protein kinase; CDPK, m 100.0 9.6E-39 3.3E-43 376.4 17.9 259 607-925 34-309 (504)
184 2a19_B Interferon-induced, dou 100.0 1.8E-38 6.2E-43 344.9 18.3 251 607-887 9-276 (284)
185 3e3p_A Protein kinase, putativ 100.0 1.6E-38 5.6E-43 358.0 18.5 295 602-927 16-324 (360)
186 3fdn_A Serine/threonine-protei 100.0 2.2E-38 7.4E-43 343.8 18.7 200 608-821 8-211 (279)
187 2i6l_A Mitogen-activated prote 100.0 8.7E-39 3E-43 353.7 15.8 285 608-924 10-312 (320)
188 3nyv_A Calmodulin-domain prote 100.0 3.5E-39 1.2E-43 378.5 13.3 259 607-925 24-289 (484)
189 2j7t_A Serine/threonine-protei 100.0 8.9E-39 3E-43 350.9 15.7 262 607-926 17-284 (302)
190 3byv_A Rhoptry kinase; malaria 100.0 2.4E-40 8.3E-45 375.5 3.1 247 608-923 72-365 (377)
191 3mwu_A Calmodulin-domain prote 100.0 4.6E-39 1.6E-43 377.5 13.8 259 608-926 21-285 (486)
192 1phk_A Phosphorylase kinase; g 100.0 4E-38 1.4E-42 345.0 20.3 259 608-925 16-291 (298)
193 2w1i_A JAK2; chromosomal rearr 100.0 3.8E-38 1.3E-42 350.1 20.3 269 608-886 40-323 (326)
194 3lzb_A Epidermal growth factor 100.0 3.8E-38 1.3E-42 350.2 20.1 258 608-885 14-278 (327)
195 3dbq_A Dual specificity protei 100.0 4.4E-38 1.5E-42 352.2 20.6 251 608-879 8-274 (343)
196 2v62_A Serine/threonine-protei 100.0 9.6E-39 3.3E-43 357.9 15.0 268 608-884 36-327 (345)
197 3mdy_A Bone morphogenetic prot 100.0 1.4E-37 4.9E-42 346.8 24.3 262 605-886 33-332 (337)
198 3fme_A Dual specificity mitoge 100.0 2.2E-38 7.4E-43 345.5 17.0 259 607-924 5-273 (290)
199 2pml_X PFPK7, Ser/Thr protein 100.0 1.1E-38 3.6E-43 357.8 14.8 275 608-925 30-330 (348)
200 3g2f_A Bone morphogenetic prot 100.0 9.1E-38 3.1E-42 348.4 22.0 274 607-890 11-323 (336)
201 2eu9_A Dual specificity protei 100.0 1.7E-38 5.8E-43 356.7 16.2 290 608-925 18-341 (355)
202 4hgt_A Casein kinase I isoform 100.0 5.4E-38 1.8E-42 343.4 19.7 270 607-888 7-283 (296)
203 2wqm_A Serine/threonine-protei 100.0 1.4E-37 4.7E-42 342.9 23.0 263 608-888 31-300 (310)
204 3uzp_A CKI-delta, CKID, casein 100.0 1.3E-37 4.6E-42 340.3 22.4 270 608-889 8-284 (296)
205 1fvr_A Tyrosine-protein kinase 100.0 6.4E-38 2.2E-42 348.4 20.0 258 608-886 24-301 (327)
206 1q8y_A SR protein kinase; tran 100.0 1.6E-38 5.4E-43 359.9 15.3 295 608-926 18-342 (373)
207 2buj_A Serine/threonine-protei 100.0 5E-38 1.7E-42 347.5 18.8 270 607-887 27-308 (317)
208 2yfx_A Tyrosine-protein kinase 100.0 5.6E-38 1.9E-42 348.9 19.1 261 607-885 28-304 (327)
209 2ycf_A Serine/threonine-protei 100.0 2.7E-38 9.1E-43 350.7 16.4 259 607-924 8-281 (322)
210 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8E-38 2.7E-42 353.2 20.3 269 606-903 62-354 (365)
211 4eut_A Serine/threonine-protei 100.0 7E-38 2.4E-42 357.5 20.0 267 608-885 8-309 (396)
212 2vwi_A Serine/threonine-protei 100.0 1.1E-38 3.8E-43 350.1 12.7 276 605-925 11-295 (303)
213 4fl3_A Tyrosine-protein kinase 100.0 7.7E-38 2.6E-42 376.8 21.2 251 615-885 375-631 (635)
214 4ecn_A Leucine-rich repeat pro 100.0 5E-38 1.7E-42 387.2 19.6 317 30-370 264-710 (876)
215 1u5q_A Serine/threonine protei 100.0 1.2E-37 4E-42 349.0 20.7 199 608-822 53-258 (348)
216 2zmd_A Dual specificity protei 100.0 1.4E-37 4.8E-42 354.0 21.5 251 608-879 55-321 (390)
217 2h34_A Serine/threonine-protei 100.0 1E-37 3.5E-42 343.9 19.6 259 608-885 33-296 (309)
218 2vgo_A Serine/threonine-protei 100.0 1.3E-37 4.6E-42 338.4 19.7 253 608-924 13-269 (284)
219 2w5a_A Serine/threonine-protei 100.0 4.2E-38 1.4E-42 341.3 15.4 207 608-821 5-220 (279)
220 2clq_A Mitogen-activated prote 100.0 3.6E-37 1.2E-41 336.8 22.4 260 610-926 23-287 (295)
221 3coi_A Mitogen-activated prote 100.0 3.6E-38 1.2E-42 354.4 14.4 276 608-924 23-312 (353)
222 3bhy_A Death-associated protei 100.0 8.3E-37 2.8E-41 331.8 24.5 201 608-821 4-215 (283)
223 2h6d_A 5'-AMP-activated protei 100.0 1.5E-37 5.2E-42 336.4 18.5 200 608-820 10-214 (276)
224 3q60_A ROP5B; pseudokinase, tr 100.0 2.3E-38 7.7E-43 358.5 12.5 260 608-923 61-358 (371)
225 3a7i_A MST3 kinase, serine/thr 100.0 3.2E-37 1.1E-41 338.8 21.2 201 608-821 21-223 (303)
226 2wtk_C Serine/threonine-protei 100.0 4.1E-37 1.4E-41 338.2 21.9 252 608-879 4-264 (305)
227 3ll6_A Cyclin G-associated kin 100.0 2.6E-37 8.8E-42 344.4 20.1 267 606-888 25-311 (337)
228 3sv0_A Casein kinase I-like; t 100.0 4.5E-37 1.5E-41 357.5 22.7 269 608-888 6-281 (483)
229 4eco_A Uncharacterized protein 100.0 8.2E-38 2.8E-42 378.6 16.6 320 31-370 26-470 (636)
230 1b6c_B TGF-B superfamily recep 100.0 7.1E-37 2.4E-41 342.0 22.4 264 603-886 36-337 (342)
231 2x7f_A TRAF2 and NCK-interacti 100.0 1.7E-37 5.7E-42 344.7 16.8 212 599-821 14-238 (326)
232 3rgz_A Protein brassinosteroid 100.0 3.9E-37 1.3E-41 381.2 21.8 310 33-369 10-355 (768)
233 3fhr_A MAP kinase-activated pr 100.0 4E-38 1.4E-42 351.3 11.3 260 607-925 26-295 (336)
234 1u46_A ACK-1, activated CDC42 100.0 3.3E-37 1.1E-41 336.4 17.6 260 608-885 17-284 (291)
235 3gxj_A TGF-beta receptor type- 100.0 1.1E-38 3.9E-43 350.0 5.4 259 608-885 2-297 (303)
236 3an0_A Dual specificity mitoge 100.0 6.8E-37 2.3E-41 342.0 19.6 203 607-821 49-261 (340)
237 2j0j_A Focal adhesion kinase 1 100.0 5.3E-37 1.8E-41 370.9 20.1 262 603-885 384-651 (656)
238 3com_A Serine/threonine-protei 100.0 1.8E-36 6.2E-41 334.5 22.5 202 607-821 27-229 (314)
239 3a99_A Proto-oncogene serine/t 100.0 9.8E-38 3.3E-42 345.8 11.7 252 605-926 39-302 (320)
240 2rio_A Serine/threonine-protei 100.0 5.5E-37 1.9E-41 354.2 16.6 202 609-820 15-243 (434)
241 3qa8_A MGC80376 protein; kinas 100.0 5.4E-37 1.9E-41 364.2 15.9 205 608-823 13-229 (676)
242 3cek_A Dual specificity protei 100.0 1.6E-36 5.4E-41 335.0 18.1 211 599-821 18-243 (313)
243 3p23_A Serine/threonine-protei 100.0 4.3E-37 1.5E-41 354.1 14.1 258 607-923 22-289 (432)
244 1zy4_A Serine/threonine-protei 100.0 3.7E-36 1.3E-40 329.7 19.9 264 608-924 5-290 (303)
245 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.8E-37 1.3E-41 340.7 11.2 266 601-885 25-302 (319)
246 2iwi_A Serine/threonine-protei 100.0 2.4E-36 8.3E-41 333.3 17.4 201 605-819 27-241 (312)
247 3aln_A Dual specificity mitoge 100.0 5.3E-36 1.8E-40 332.9 19.3 203 607-821 20-233 (327)
248 3v47_A TOLL-like receptor 5B a 100.0 2E-35 7E-40 343.7 23.9 303 61-375 6-413 (455)
249 2id5_A Lingo-1, leucine rich r 100.0 1.4E-35 4.9E-40 347.3 20.7 313 62-380 6-343 (477)
250 2wei_A Calmodulin-domain prote 100.0 3.8E-35 1.3E-39 319.7 22.6 201 607-821 20-226 (287)
251 2dyl_A Dual specificity mitoge 100.0 4.8E-36 1.6E-40 331.6 15.2 202 608-822 24-234 (318)
252 2vuw_A Serine/threonine-protei 100.0 4E-36 1.4E-40 335.3 8.7 192 607-818 18-278 (336)
253 3rgz_A Protein brassinosteroid 100.0 1.1E-34 3.8E-39 359.1 18.9 284 83-372 369-719 (768)
254 3m2w_A MAP kinase-activated pr 100.0 1.1E-33 3.8E-38 310.0 20.8 240 608-926 16-265 (299)
255 3uqc_A Probable conserved tran 100.0 1.4E-33 4.8E-38 307.0 20.1 229 608-885 30-265 (286)
256 2pzi_A Probable serine/threoni 100.0 6.9E-34 2.4E-38 346.9 18.0 240 608-884 79-327 (681)
257 3dzo_A Rhoptry kinase domain; 100.0 2.9E-33 1E-37 320.9 20.6 241 608-878 77-363 (413)
258 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-32 6.1E-37 330.9 26.5 149 68-216 14-167 (606)
259 3o6n_A APL1; leucine-rich repe 100.0 1.4E-32 4.9E-37 313.1 20.3 308 54-379 3-361 (390)
260 4g8a_A TOLL-like receptor 4; l 100.0 8.4E-32 2.9E-36 326.3 25.1 309 68-381 34-591 (635)
261 3oja_B Anopheles plasmodium-re 100.0 2.3E-32 7.7E-37 328.9 19.9 308 53-378 8-366 (597)
262 4fcg_A Uncharacterized protein 100.0 1.8E-32 6.2E-37 304.2 16.9 274 32-318 24-313 (328)
263 3t6q_A CD180 antigen; protein- 100.0 6.1E-32 2.1E-36 326.2 22.3 291 83-380 255-570 (606)
264 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-31 6.3E-36 319.0 24.9 280 82-378 52-518 (562)
265 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-31 9.9E-36 314.2 21.4 281 81-378 44-489 (520)
266 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-31 7.4E-36 317.4 20.4 162 64-226 3-172 (549)
267 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-31 1.6E-35 330.1 21.6 283 82-380 266-570 (844)
268 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-30 5.9E-35 318.0 25.4 295 82-382 329-635 (680)
269 1xku_A Decorin; proteoglycan, 100.0 6.2E-30 2.1E-34 284.4 25.6 272 62-348 28-306 (330)
270 2z80_A TOLL-like receptor 2, v 100.0 1.7E-31 5.8E-36 299.9 13.0 277 62-374 27-318 (353)
271 2z66_A Variable lymphocyte rec 100.0 7.5E-31 2.6E-35 288.5 17.7 264 61-379 3-270 (306)
272 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-30 1.5E-34 285.8 23.4 243 62-320 30-278 (332)
273 4eco_A Uncharacterized protein 100.0 6.2E-31 2.1E-35 318.3 17.4 286 80-371 204-527 (636)
274 3zyi_A Leucine-rich repeat-con 100.0 4.5E-30 1.5E-34 298.4 23.2 254 84-379 56-312 (452)
275 3zyj_A Leucine-rich repeat-con 100.0 5E-30 1.7E-34 296.9 23.3 254 84-379 45-301 (440)
276 2z63_A TOLL-like receptor 4, v 100.0 3.4E-30 1.2E-34 308.5 21.2 91 283-378 446-539 (570)
277 4ecn_A Leucine-rich repeat pro 100.0 2.5E-30 8.5E-35 318.7 19.8 283 80-371 446-767 (876)
278 3t6q_A CD180 antigen; protein- 100.0 8.7E-30 3E-34 307.4 23.8 181 60-240 5-193 (606)
279 1ziw_A TOLL-like receptor 3; i 100.0 1E-29 3.6E-34 311.0 24.2 302 62-369 1-365 (680)
280 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.8E-33 274.2 27.1 267 83-372 32-308 (330)
281 2id5_A Lingo-1, leucine rich r 100.0 5.1E-29 1.7E-33 291.6 24.6 287 68-371 5-310 (477)
282 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-29 1.5E-33 312.1 24.8 286 80-371 22-376 (844)
283 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-30 1.9E-34 282.4 13.9 255 106-375 50-309 (313)
284 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5.2E-33 273.4 24.6 265 83-372 34-309 (332)
285 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-29 9.8E-34 297.1 19.0 127 82-214 21-150 (520)
286 3v47_A TOLL-like receptor 5B a 100.0 2.2E-29 7.4E-34 292.8 16.8 256 82-350 79-410 (455)
287 3zyj_A Leucine-rich repeat-con 100.0 2.9E-28 9.9E-33 282.1 22.1 248 62-319 38-292 (440)
288 3zyi_A Leucine-rich repeat-con 100.0 3E-28 1E-32 283.0 22.3 249 61-319 48-303 (452)
289 3o6n_A APL1; leucine-rich repe 100.0 2.2E-28 7.6E-33 278.4 19.0 275 81-375 68-379 (390)
290 4fcg_A Uncharacterized protein 100.0 7.2E-28 2.5E-32 267.2 19.7 229 104-351 79-317 (328)
291 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-27 9.4E-32 282.8 25.5 127 84-216 33-160 (562)
292 3oja_B Anopheles plasmodium-re 100.0 5.2E-28 1.8E-32 290.9 18.7 249 81-349 74-359 (597)
293 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.5E-32 259.8 19.2 232 85-378 14-246 (285)
294 1ozn_A Reticulon 4 receptor; N 99.9 7E-28 2.4E-32 262.0 15.6 259 61-328 4-270 (285)
295 2z80_A TOLL-like receptor 2, v 99.9 4.9E-28 1.7E-32 271.7 14.8 241 79-323 73-318 (353)
296 1wwl_A Monocyte differentiatio 99.9 4.8E-29 1.6E-33 274.9 5.8 252 102-370 39-309 (312)
297 1wwl_A Monocyte differentiatio 99.9 4.1E-29 1.4E-33 275.4 4.9 248 82-350 43-311 (312)
298 2o6q_A Variable lymphocyte rec 99.9 1.7E-26 5.9E-31 248.9 20.4 165 65-238 5-169 (270)
299 4fmz_A Internalin; leucine ric 99.9 2.1E-26 7.3E-31 257.6 21.4 262 81-374 65-328 (347)
300 2z66_A Variable lymphocyte rec 99.9 4.9E-27 1.7E-31 258.0 15.4 232 81-321 27-263 (306)
301 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-26 3.7E-31 276.8 18.7 176 87-266 10-211 (549)
302 3bz5_A Internalin-J, INLJ; leu 99.9 8.2E-26 2.8E-30 262.0 24.3 265 82-371 64-353 (457)
303 4azs_A Methyltransferase WBDD; 99.9 4.3E-28 1.5E-32 287.7 4.2 185 616-816 241-437 (569)
304 3oja_A Leucine-rich immune mol 99.9 8.9E-28 3E-32 280.9 5.4 242 106-374 34-286 (487)
305 2z62_A TOLL-like receptor 4, v 99.9 8.1E-26 2.8E-30 244.4 20.4 207 131-374 29-241 (276)
306 1o6v_A Internalin A; bacterial 99.9 1.4E-25 4.9E-30 261.4 24.0 260 81-371 67-345 (466)
307 4fmz_A Internalin; leucine ric 99.9 1.5E-25 5.2E-30 250.6 23.0 255 83-369 45-299 (347)
308 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-26 1.1E-30 276.2 18.7 282 80-383 283-571 (606)
309 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-25 4.8E-30 260.0 22.9 256 81-369 41-298 (457)
310 2z62_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 245.9 16.9 215 98-323 22-241 (276)
311 1p9a_G Platelet glycoprotein I 99.9 9.8E-26 3.4E-30 245.4 18.9 212 102-379 6-217 (290)
312 1o6v_A Internalin A; bacterial 99.9 1.7E-25 6E-30 260.7 22.1 260 80-370 88-366 (466)
313 3o53_A Protein LRIM1, AGAP0063 99.9 4.6E-27 1.6E-31 259.6 7.3 222 83-326 11-233 (317)
314 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-26 2.3E-30 270.7 17.8 276 54-371 12-298 (622)
315 4g8a_A TOLL-like receptor 4; l 99.9 3.5E-25 1.2E-29 268.2 22.9 259 80-349 74-581 (635)
316 1jl5_A Outer protein YOPM; leu 99.9 3.6E-24 1.2E-28 247.9 27.6 161 82-265 91-251 (454)
317 3oja_A Leucine-rich immune mol 99.9 2.7E-26 9.2E-31 268.4 8.3 237 80-343 32-270 (487)
318 1jl5_A Outer protein YOPM; leu 99.9 2.6E-25 8.7E-30 257.6 16.5 251 82-371 11-291 (454)
319 2z63_A TOLL-like receptor 4, v 99.9 7.7E-25 2.6E-29 262.0 19.4 292 69-370 11-338 (570)
320 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-26 1.9E-30 251.0 6.8 236 81-343 33-270 (317)
321 3rfs_A Internalin B, repeat mo 99.9 1.2E-24 4.2E-29 234.6 13.3 227 83-331 20-247 (272)
322 3en9_A Glycoprotease, O-sialog 99.9 1.5E-25 5E-30 264.5 5.5 190 612-817 339-538 (540)
323 3rfs_A Internalin B, repeat mo 99.9 3.1E-24 1.1E-28 231.4 14.9 209 81-308 40-248 (272)
324 2o6q_A Variable lymphocyte rec 99.9 1.7E-23 5.9E-28 225.4 20.1 208 56-265 6-219 (270)
325 3m19_A Variable lymphocyte rec 99.9 7.7E-24 2.6E-28 225.5 16.8 191 63-266 4-194 (251)
326 4glp_A Monocyte differentiatio 99.9 1.6E-24 5.3E-29 238.5 11.0 227 106-349 64-308 (310)
327 2xwt_C Thyrotropin receptor; s 99.9 2.1E-23 7.2E-28 220.3 14.9 195 107-316 32-236 (239)
328 1p9a_G Platelet glycoprotein I 99.9 6.4E-23 2.2E-27 223.1 18.0 199 82-295 10-208 (290)
329 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-25 4E-30 261.7 -7.9 287 83-371 86-412 (461)
330 3cvr_A Invasion plasmid antige 99.9 2.8E-23 9.6E-28 245.0 11.9 212 60-331 40-255 (571)
331 1h6u_A Internalin H; cell adhe 99.9 8.5E-23 2.9E-27 224.3 14.7 200 102-326 37-236 (308)
332 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8.1E-27 213.9 17.6 180 107-321 15-194 (251)
333 2xwt_C Thyrotropin receptor; s 99.9 1.9E-22 6.4E-27 213.1 15.7 178 131-319 32-218 (239)
334 3goz_A Leucine-rich repeat-con 99.9 4.4E-24 1.5E-28 240.3 1.5 261 86-349 2-298 (362)
335 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.8E-27 222.9 13.2 224 83-320 65-308 (310)
336 2o6s_A Variable lymphocyte rec 99.9 1.7E-22 5.9E-27 208.5 12.8 181 61-269 3-183 (208)
337 4ay9_X Follicle-stimulating ho 99.9 3.5E-22 1.2E-26 223.6 15.6 246 85-375 12-263 (350)
338 2ast_B S-phase kinase-associat 99.9 5.7E-24 1.9E-28 236.7 -1.9 260 66-351 38-309 (336)
339 3g06_A SSPH2 (leucine-rich rep 99.9 5.1E-21 1.7E-25 228.5 23.5 222 82-350 61-299 (622)
340 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.5E-26 219.0 16.6 244 62-318 6-258 (350)
341 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-24 5.4E-29 252.1 -7.5 286 82-369 28-353 (461)
342 1zar_A RIO2 kinase; serine kin 99.9 2.3E-22 7.7E-27 217.5 9.4 153 601-790 82-252 (282)
343 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.4E-28 237.9 -0.8 237 83-322 33-319 (386)
344 2o6s_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 199.9 14.2 181 109-307 10-190 (208)
345 3goz_A Leucine-rich repeat-con 99.9 2.8E-23 9.7E-28 233.7 -0.4 259 110-372 2-299 (362)
346 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.7E-26 212.5 14.8 210 112-352 25-234 (308)
347 2ca6_A RAN GTPase-activating p 99.8 2.5E-23 8.5E-28 236.3 -3.1 241 98-349 24-317 (386)
348 2ast_B S-phase kinase-associat 99.8 3.1E-22 1.1E-26 222.6 0.8 235 82-328 70-315 (336)
349 2xot_A Amphoterin-induced prot 99.8 5.1E-21 1.8E-25 215.1 10.6 129 109-240 21-150 (361)
350 3e6j_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 192.6 15.9 157 63-240 17-173 (229)
351 2v9t_B SLIT homolog 2 protein 99.8 3.2E-20 1.1E-24 193.2 13.6 146 91-239 20-165 (220)
352 2v70_A SLIT-2, SLIT homolog 2 99.8 7.3E-20 2.5E-24 190.5 13.4 152 86-240 15-167 (220)
353 4b8c_D Glucose-repressible alc 99.8 4.4E-21 1.5E-25 234.5 3.4 220 35-269 132-359 (727)
354 3cvr_A Invasion plasmid antige 99.8 4.5E-19 1.6E-23 209.1 18.7 159 154-350 80-245 (571)
355 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 203.6 13.3 176 85-264 21-202 (361)
356 2v9t_B SLIT homolog 2 protein 99.8 3.1E-19 1.1E-23 185.7 14.8 152 109-264 14-165 (220)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-19 1.1E-23 185.5 14.6 153 109-265 14-167 (220)
358 1h6t_A Internalin B; cell adhe 99.8 4.2E-19 1.5E-23 193.1 13.4 172 103-320 43-214 (291)
359 1h6t_A Internalin B; cell adhe 99.8 5.9E-19 2E-23 191.9 14.1 170 81-265 45-214 (291)
360 1m9s_A Internalin B; cell inva 99.8 5E-19 1.7E-23 211.0 13.1 33 285-319 178-210 (605)
361 3e6j_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 181.4 15.5 151 109-264 22-172 (229)
362 1dce_A Protein (RAB geranylger 99.8 3.8E-21 1.3E-25 228.0 -5.8 207 103-342 346-567 (567)
363 1m9s_A Internalin B; cell inva 99.8 9E-19 3.1E-23 208.8 14.3 199 83-305 22-220 (605)
364 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.6E-23 175.2 11.9 154 102-264 40-194 (197)
365 1zth_A RIO1 serine protein kin 99.7 2.5E-18 8.5E-23 183.5 10.8 136 611-760 49-219 (258)
366 1xeu_A Internalin C; cellular 99.7 2.9E-18 1E-22 183.5 8.7 168 82-265 19-186 (263)
367 1dce_A Protein (RAB geranylger 99.7 8.5E-20 2.9E-24 216.4 -4.0 202 127-364 346-567 (567)
368 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.9E-22 170.7 11.4 152 81-240 43-195 (197)
369 4b8c_D Glucose-repressible alc 99.7 3.4E-18 1.2E-22 209.0 8.3 188 106-326 173-361 (727)
370 1xeu_A Internalin C; cellular 99.7 8.5E-18 2.9E-22 179.9 10.2 171 128-321 17-187 (263)
371 3ogk_B Coronatine-insensitive 99.7 3E-19 1E-23 214.4 -2.9 86 281-371 435-527 (592)
372 1w8a_A SLIT protein; signaling 99.7 7.7E-17 2.6E-21 163.8 12.6 129 109-240 11-140 (192)
373 1w8a_A SLIT protein; signaling 99.7 8.8E-17 3E-21 163.3 12.3 131 85-218 11-142 (192)
374 2o6r_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 160.9 11.8 135 61-215 3-137 (177)
375 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.4E-21 158.3 10.7 133 105-239 23-160 (168)
376 3ogk_B Coronatine-insensitive 99.7 4.6E-18 1.6E-22 204.1 -1.9 278 82-366 112-445 (592)
377 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 8E-21 156.4 10.5 136 129-267 23-163 (168)
378 2wfh_A SLIT homolog 2 protein 99.6 3.4E-16 1.2E-20 159.0 11.6 126 87-240 15-140 (193)
379 2wfh_A SLIT homolog 2 protein 99.6 7.2E-16 2.4E-20 156.7 12.8 127 134-265 14-140 (193)
380 2je0_A Acidic leucine-rich nuc 99.6 1.6E-16 5.4E-21 154.3 6.6 84 106-191 17-101 (149)
381 2je0_A Acidic leucine-rich nuc 99.6 3.5E-16 1.2E-20 151.9 7.3 130 128-260 15-149 (149)
382 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 150.4 13.9 130 108-240 9-138 (177)
383 4gyi_A RIO2 kinase; protein ki 99.6 3.6E-16 1.2E-20 173.3 8.3 137 609-760 95-265 (397)
384 2p1m_B Transport inhibitor res 99.6 1.4E-17 4.9E-22 199.8 -6.6 128 82-210 105-243 (594)
385 3sb4_A Hypothetical leucine ri 99.6 8.2E-16 2.8E-20 170.3 7.6 234 81-332 24-323 (329)
386 2p1m_B Transport inhibitor res 99.6 8.2E-17 2.8E-21 193.2 -3.7 283 81-369 129-518 (594)
387 3sb4_A Hypothetical leucine ri 99.6 2.1E-15 7.1E-20 167.0 6.5 237 104-363 23-327 (329)
388 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-15 1.2E-19 149.3 7.0 133 101-239 14-153 (176)
389 1ds9_A Outer arm dynein; leuci 99.5 4.4E-17 1.5E-21 166.5 -8.1 130 106-240 18-154 (198)
390 1ds9_A Outer arm dynein; leuci 99.5 5.4E-17 1.9E-21 165.8 -7.4 149 84-239 20-185 (198)
391 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-15 1.6E-19 148.3 6.2 133 125-264 14-153 (176)
392 4fdw_A Leucine rich hypothetic 99.5 3.5E-13 1.2E-17 152.7 17.0 264 84-368 115-381 (401)
393 4fdw_A Leucine rich hypothetic 99.5 1.6E-12 5.3E-17 147.3 20.1 240 104-369 111-357 (401)
394 3g39_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 135.5 11.0 104 85-191 12-115 (170)
395 3g39_A Variable lymphocyte rec 99.4 2.6E-13 8.9E-18 134.7 11.0 86 154-239 30-115 (170)
396 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 134.2 10.7 104 85-191 15-118 (174)
397 2r9u_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 132.9 11.0 85 155-239 34-118 (174)
398 2ifg_A High affinity nerve gro 99.4 7.7E-13 2.6E-17 147.4 9.3 113 61-192 3-117 (347)
399 3un9_A NLR family member X1; l 99.3 2.8E-14 9.5E-19 160.1 -8.2 46 283-328 212-261 (372)
400 3un9_A NLR family member X1; l 99.2 1.6E-13 5.4E-18 154.0 -6.0 110 106-215 72-196 (372)
401 2ifg_A High affinity nerve gro 99.2 1.6E-11 5.6E-16 136.6 10.3 79 111-191 13-93 (347)
402 3tm0_A Aminoglycoside 3'-phosp 99.2 3.2E-11 1.1E-15 128.6 10.4 144 607-758 12-212 (263)
403 1nd4_A Aminoglycoside 3'-phosp 99.0 3.2E-10 1.1E-14 120.3 9.3 128 618-758 29-213 (264)
404 4fs7_A Uncharacterized protein 99.0 1E-08 3.6E-13 116.0 18.2 269 82-367 71-376 (394)
405 3dxp_A Putative acyl-COA dehyd 98.9 3E-09 1E-13 118.9 10.8 141 614-759 43-248 (359)
406 2ra8_A Uncharacterized protein 98.8 5.8E-10 2E-14 124.0 1.2 87 224-317 250-341 (362)
407 3sg8_A APH(2'')-ID; antibiotic 98.8 6.1E-09 2.1E-13 113.4 8.6 192 614-817 25-287 (304)
408 2ra8_A Uncharacterized protein 98.8 1.9E-09 6.6E-14 119.7 3.4 87 249-346 250-341 (362)
409 3rw6_A Nuclear RNA export fact 98.7 7.8E-11 2.7E-15 124.4 -8.6 67 126-192 137-210 (267)
410 4gt6_A Cell surface protein; l 98.7 6.1E-07 2.1E-11 101.3 20.4 264 84-369 66-369 (394)
411 4fs7_A Uncharacterized protein 98.6 4E-07 1.4E-11 102.8 17.0 225 100-350 156-380 (394)
412 4gt6_A Cell surface protein; l 98.5 1.6E-06 5.5E-11 97.8 16.7 243 82-346 87-368 (394)
413 3d1u_A Putative fructosamine-3 98.5 6.1E-07 2.1E-11 96.5 12.1 75 614-692 20-97 (288)
414 3r70_A Aminoglycoside phosphot 98.5 7.9E-07 2.7E-11 97.3 12.6 136 610-759 38-237 (320)
415 3rw6_A Nuclear RNA export fact 98.4 3.8E-08 1.3E-12 103.8 -0.7 121 134-257 120-257 (267)
416 1io0_A Tropomodulin; LRR prote 98.3 4.2E-08 1.5E-12 98.3 -1.5 69 99-167 29-106 (185)
417 1io0_A Tropomodulin; LRR prote 98.3 8.1E-08 2.8E-12 96.2 -0.4 38 202-239 93-136 (185)
418 3rfe_A Platelet glycoprotein I 98.3 7E-07 2.4E-11 83.6 5.8 65 310-381 12-79 (130)
419 4gkh_A Aminoglycoside 3'-phosp 98.3 3.3E-06 1.1E-10 89.8 11.9 134 616-758 31-222 (272)
420 3tdw_A Gentamicin resistance p 98.3 5.8E-06 2E-10 89.8 13.8 136 614-759 24-224 (306)
421 4h09_A Hypothetical leucine ri 98.2 3.5E-05 1.2E-09 86.2 18.1 77 83-164 47-123 (379)
422 4h09_A Hypothetical leucine ri 98.1 7.1E-05 2.4E-09 83.7 19.1 244 82-350 69-347 (379)
423 3ats_A Putative uncharacterize 98.1 4.5E-06 1.6E-10 92.7 8.7 80 614-693 25-121 (357)
424 3ovc_A Hygromycin-B 4-O-kinase 98.1 9.4E-06 3.2E-10 90.3 10.0 140 614-759 46-243 (362)
425 2olc_A MTR kinase, methylthior 97.8 5.6E-05 1.9E-09 85.2 11.7 75 614-690 35-120 (397)
426 2q83_A YTAA protein; 2635576, 97.7 0.00012 4.1E-09 80.3 11.7 139 615-758 38-251 (346)
427 3f7w_A Putative fructosamine-3 97.7 0.0001 3.5E-09 79.1 10.8 78 611-692 17-97 (288)
428 3jr1_A Putative fructosamine-3 97.6 0.00021 7.1E-09 77.4 10.9 137 614-755 41-232 (312)
429 3e4g_A ATP synthase subunit S, 97.4 3.7E-05 1.3E-09 75.2 2.2 34 107-140 62-95 (176)
430 3e4g_A ATP synthase subunit S, 97.4 4.4E-05 1.5E-09 74.7 1.7 34 131-164 62-95 (176)
431 2pyw_A Uncharacterized protein 97.4 0.00057 2E-08 77.5 11.2 73 614-689 39-122 (420)
432 3csv_A Aminoglycoside phosphot 97.2 0.0014 4.7E-08 71.7 11.5 140 615-759 24-217 (333)
433 2ppq_A HSK, HK, homoserine kin 97.1 0.0025 8.6E-08 69.1 11.9 157 599-758 7-216 (322)
434 1zyl_A Hypothetical protein YI 96.8 0.008 2.7E-07 65.3 13.5 141 615-759 32-223 (328)
435 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00041 1.4E-08 69.1 2.7 40 128-167 39-83 (197)
436 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00015 5E-09 72.3 -0.7 87 101-187 36-135 (197)
437 3dxq_A Choline/ethanolamine ki 96.8 0.0027 9.2E-08 68.3 9.2 71 614-692 23-95 (301)
438 1nw1_A Choline kinase (49.2 KD 96.7 0.0017 5.8E-08 73.7 7.2 73 614-692 78-159 (429)
439 3feg_A Choline/ethanolamine ki 96.7 0.0042 1.4E-07 69.0 9.5 139 615-758 56-253 (379)
440 2qg7_A Ethanolamine kinase PV0 96.4 0.0068 2.3E-07 69.1 9.5 74 614-692 113-188 (458)
441 3rfe_A Platelet glycoprotein I 96.4 0.0033 1.1E-07 58.4 5.5 54 110-165 12-66 (130)
442 3c5i_A Choline kinase; choline 96.2 0.0079 2.7E-07 66.7 7.9 73 615-692 39-121 (369)
443 3i1a_A Spectinomycin phosphotr 96.0 0.042 1.4E-06 60.0 12.7 67 619-692 33-108 (339)
444 4b9d_A Serine/threonine-protei 95.3 0.002 6.8E-08 70.6 -1.2 61 864-924 221-283 (350)
445 3fdn_A Serine/threonine-protei 95.1 0.003 1E-07 66.8 -0.8 63 864-926 203-266 (279)
446 2yle_A Protein spire homolog 1 94.8 0.16 5.5E-06 50.8 10.8 103 690-816 33-135 (229)
447 3f2s_A CK, chetk-alpha, cholin 94.8 0.19 6.5E-06 55.9 12.7 140 615-758 58-279 (401)
448 3mes_A Choline kinase; malaria 94.2 0.16 5.4E-06 57.0 10.5 74 614-692 75-157 (424)
449 2h6d_A 5'-AMP-activated protei 93.9 0.0044 1.5E-07 65.3 -2.9 62 864-925 207-269 (276)
450 2k1k_A Ephrin type-A receptor 93.4 0.032 1.1E-06 38.9 1.9 30 539-568 5-34 (38)
451 2vgo_A Serine/threonine-protei 93.4 0.012 4.2E-07 62.2 -0.4 13 865-877 209-221 (284)
452 2wtk_C Serine/threonine-protei 93.0 0.012 4.2E-07 62.8 -1.2 63 864-926 209-272 (305)
453 3m2w_A MAP kinase-activated pr 92.6 0.0061 2.1E-07 65.3 -4.4 32 848-879 226-257 (299)
454 3bhy_A Death-associated protei 92.5 0.019 6.5E-07 60.6 -0.7 33 891-923 239-271 (283)
455 2wei_A Calmodulin-domain prote 91.8 0.01 3.6E-07 62.9 -3.8 33 892-924 251-283 (287)
456 3com_A Serine/threonine-protei 91.3 0.056 1.9E-06 57.9 1.4 34 893-926 254-287 (314)
457 2clq_A Mitogen-activated prote 90.9 0.03 1E-06 59.3 -1.2 25 855-879 255-279 (295)
458 2iwi_A Serine/threonine-protei 90.8 0.015 5.2E-07 62.4 -3.7 36 891-926 257-292 (312)
459 3dbq_A Dual specificity protei 90.4 0.022 7.6E-07 62.2 -2.9 32 893-924 249-280 (343)
460 2w5a_A Serine/threonine-protei 90.2 0.062 2.1E-06 56.4 0.5 63 864-926 212-276 (279)
461 3cek_A Dual specificity protei 89.6 0.026 9.1E-07 60.6 -3.1 31 896-926 271-301 (313)
462 3a7i_A MST3 kinase, serine/thr 89.4 0.054 1.8E-06 57.7 -0.9 35 893-927 246-280 (303)
463 3an0_A Dual specificity mitoge 89.2 0.025 8.5E-07 61.6 -3.8 32 895-926 288-319 (340)
464 3g15_A CK, chetk-alpha, cholin 88.9 1.3 4.6E-05 49.1 10.2 29 731-759 246-280 (401)
465 2zmd_A Dual specificity protei 88.8 0.035 1.2E-06 61.9 -2.9 33 893-925 296-328 (390)
466 2x7f_A TRAF2 and NCK-interacti 88.4 0.028 9.6E-07 60.7 -4.0 30 896-925 265-294 (326)
467 2dyl_A Dual specificity mitoge 88.3 0.04 1.4E-06 59.1 -2.9 29 895-923 261-289 (318)
468 2ks1_B Epidermal growth factor 88.2 0.45 1.5E-05 34.2 3.5 7 550-556 13-19 (44)
469 3aln_A Dual specificity mitoge 87.5 0.028 9.6E-07 60.8 -4.7 29 895-923 263-291 (327)
470 2l2t_A Receptor tyrosine-prote 87.1 0.37 1.3E-05 34.6 2.6 7 550-556 12-18 (44)
471 1u5q_A Serine/threonine protei 86.5 0.083 2.8E-06 57.8 -1.7 34 893-926 281-314 (348)
472 3dzo_A Rhoptry kinase domain; 83.8 0.053 1.8E-06 61.0 -5.0 34 890-923 336-369 (413)
473 2jwa_A Receptor tyrosine-prote 78.1 1 3.5E-05 32.2 1.9 26 546-572 13-38 (44)
474 4ann_A ESSB; membrane protein, 75.9 6.3 0.00022 39.2 7.7 115 663-818 43-158 (215)
475 3qup_A Tyrosine-protein kinase 74.6 0.35 1.2E-05 51.8 -2.0 33 892-924 266-305 (323)
476 4euu_A Serine/threonine-protei 74.1 0.24 8.4E-06 53.0 -3.4 25 895-919 280-304 (319)
477 4ano_A ESSB; membrane protein, 72.3 15 0.0005 36.7 9.3 114 663-817 48-162 (219)
478 4fvq_A Tyrosine-protein kinase 71.5 0.79 2.7E-05 48.0 -0.1 50 869-918 220-269 (289)
479 3cxl_A N-chimerin; SH2, RHO-GA 70.2 0.46 1.6E-05 54.0 -2.4 59 613-674 146-213 (463)
480 1q8y_A SR protein kinase; tran 70.2 5.8 0.0002 42.9 6.6 34 846-879 301-334 (373)
481 3hyh_A Carbon catabolite-derep 70.1 1.2 4.3E-05 46.5 1.1 29 851-879 235-263 (275)
482 4g3f_A NF-kappa-beta-inducing 66.6 0.72 2.5E-05 49.9 -1.8 35 889-923 281-328 (336)
483 2ks1_B Epidermal growth factor 66.5 4.8 0.00017 28.9 3.1 31 543-573 9-39 (44)
484 2eue_A Carbon catabolite derep 65.3 1.6 5.3E-05 45.3 0.6 29 851-879 235-263 (275)
485 3fpq_A Serine/threonine-protei 64.8 1.3 4.3E-05 46.9 -0.3 27 853-879 257-283 (290)
486 1z57_A Dual specificity protei 64.3 2.9 0.0001 44.5 2.6 33 847-879 297-329 (339)
487 1wak_A Serine/threonine-protei 63.9 2.9 9.8E-05 45.8 2.5 28 896-923 370-397 (397)
488 2k9y_A Ephrin type-A receptor 62.4 3.6 0.00012 29.0 1.9 16 547-562 12-27 (41)
489 2l2t_A Receptor tyrosine-prote 61.9 5.6 0.00019 28.5 2.7 33 542-574 7-39 (44)
490 2eu9_A Dual specificity protei 58.8 4.2 0.00014 43.6 2.6 32 848-879 303-334 (355)
491 3ork_A Serine/threonine protei 58.5 0.76 2.6E-05 48.9 -3.5 33 891-923 247-279 (311)
492 2vx3_A Dual specificity tyrosi 58.1 4.9 0.00017 44.0 3.0 29 896-924 351-379 (382)
493 4agu_A Cyclin-dependent kinase 57.1 4.8 0.00016 42.4 2.6 29 851-879 257-285 (311)
494 2j7t_A Serine/threonine-protei 56.9 2.8 9.5E-05 44.0 0.7 28 851-878 248-275 (302)
495 1ob3_A PFPK5, cell division co 56.0 3.1 0.00011 43.4 0.9 29 851-879 253-281 (288)
496 3gni_B Strad alpha; kinase fol 55.4 3.2 0.00011 45.6 0.9 33 847-879 302-334 (389)
497 3o0g_A Cell division protein k 55.2 3.5 0.00012 43.0 1.1 31 849-879 253-283 (292)
498 3is5_A Calcium-dependent prote 54.7 6.4 0.00022 40.9 3.1 26 853-878 253-278 (285)
499 3kk8_A Calcium/calmodulin depe 54.1 4.1 0.00014 42.2 1.5 28 852-879 235-262 (284)
500 2ac3_A MAP kinase-interacting 53.9 6.6 0.00023 41.3 3.1 27 853-879 270-296 (316)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=2.7e-52 Score=454.27 Aligned_cols=262 Identities=30% Similarity=0.488 Sum_probs=222.5
Q ss_pred cCCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
++|.+.++||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 56778899999999999999863 478899999987766667889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcC-----------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEE
Q 002289 683 VYEFMSNGTLRDQLSAKS-----------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKV 751 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl 751 (941)
|||||++|+|.++++... ...+++..++.|+.||++||+|||+++ ||||||||+|||+++++++||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEEE
Confidence 999999999999997532 356999999999999999999999998 999999999999999999999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHH
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIA 830 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~ 830 (941)
+|||+|+.....+. ........||+.|||||++.+..|+.++|||||||++|||+| |+.||...... +.
T Consensus 170 ~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~-~~---- 239 (299)
T 4asz_A 170 GDFGMSRDVYSTDY-----YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN-EV---- 239 (299)
T ss_dssp CCCSCHHHHTGGGC-----EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HH----
T ss_pred CCcccceecCCCCc-----eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-HH----
Confidence 99999986533211 122334568999999999999999999999999999999999 89999765431 11
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
+..+..+.....|..+++++.+++.+||+.+|++||++.++.+.|+++.+..|
T Consensus 240 -----~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 240 -----IECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp -----HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 12233445556778888999999999999999999999999999998876544
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=9.7e-52 Score=456.18 Aligned_cols=262 Identities=29% Similarity=0.488 Sum_probs=216.6
Q ss_pred cCCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
++|.+.++||+|+||+||+|+++ +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45667789999999999999864 478999999987766667889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcC-------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcE
Q 002289 683 VYEFMSNGTLRDQLSAKS-------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTA 749 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~ 749 (941)
|||||++|+|.++++... ..++++.+++.|+.||++||+|||+++ ||||||||+|||+++++++
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcE
Confidence 999999999999997642 246899999999999999999999998 9999999999999999999
Q ss_pred EEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHH
Q 002289 750 KVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVN 828 (941)
Q Consensus 750 kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~ 828 (941)
||+|||+|+.....+. ........||+.|||||++.+..++.++|||||||++|||+| |+.||....... .
T Consensus 198 Ki~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~-~-- 269 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDY-----YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE-A-- 269 (329)
T ss_dssp EECCCC---------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-H--
T ss_pred EEcccccceeccCCCc-----ceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH-H--
Confidence 9999999986543221 122344579999999999999999999999999999999999 899997654321 1
Q ss_pred HHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 829 IAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
+..+..+.....|..+++++.+++.+||+.+|++||++.+++++|+.+.+..|
T Consensus 270 -------~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 270 -------IDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp -------HHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred -------HHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence 11223344456677888999999999999999999999999999999876543
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=4.9e-52 Score=457.79 Aligned_cols=264 Identities=22% Similarity=0.375 Sum_probs=216.2
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEecC
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 687 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~~ 687 (941)
+.|++.++||+|+||+||+|++. +|+.||||++........+.+.+|+++|++++|||||+++++|.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56888999999999999999975 69999999997655555677999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCC
Q 002289 688 SNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEG 767 (941)
Q Consensus 688 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~ 767 (941)
+||+|.+++.+. .+++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+......
T Consensus 154 ~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--- 224 (346)
T 4fih_A 154 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--- 224 (346)
T ss_dssp TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS---
T ss_pred CCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCC---
Confidence 999999999653 4899999999999999999999999 9999999999999999999999999998764321
Q ss_pred ccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCC
Q 002289 768 IVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSY 847 (941)
Q Consensus 768 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (941)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||....... ..
T Consensus 225 ----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-~~-------------------- 279 (346)
T 4fih_A 225 ----PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-AM-------------------- 279 (346)
T ss_dssp ----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HH--------------------
T ss_pred ----CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HH--------------------
Confidence 22345689999999999999999999999999999999999999997543211 11
Q ss_pred ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCC
Q 002289 848 PSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVSG 927 (941)
Q Consensus 848 ~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~~ 927 (941)
+.+.... +..-+.. ....+++.+||.+||+.||++|+||+|+|+||||+....-
T Consensus 280 ---------~~i~~~~---~~~~~~~--------------~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~~p 333 (346)
T 4fih_A 280 ---------KMIRDNL---PPRLKNL--------------HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP 333 (346)
T ss_dssp ---------HHHHHSS---CCCCSCG--------------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCG
T ss_pred ---------HHHHcCC---CCCCCcc--------------ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCCCC
Confidence 1111100 0000000 1122344578999999999999999999999999875544
Q ss_pred Ccccc
Q 002289 928 SNLVS 932 (941)
Q Consensus 928 ~~~~~ 932 (941)
+.+++
T Consensus 334 ~~l~p 338 (346)
T 4fih_A 334 ASIVP 338 (346)
T ss_dssp GGTGG
T ss_pred cccCc
Confidence 44443
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.1e-51 Score=451.39 Aligned_cols=257 Identities=25% Similarity=0.411 Sum_probs=216.5
Q ss_pred CCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 610 NFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 610 ~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
++++.++||+|+||+||+|++. +++.||||+++.... ...++|.+|+.++++++|||||+++|+|.+++..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4556789999999999999863 468899999975433 235689999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcC--------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc
Q 002289 683 VYEFMSNGTLRDQLSAKS--------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT 748 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~ 748 (941)
|||||++|+|.++|+.+. ...+++..++.|+.|||+||+|||+++ ||||||||+|||++++++
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCCCC
Confidence 999999999999996532 235899999999999999999999999 999999999999999999
Q ss_pred EEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHH
Q 002289 749 AKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREV 827 (941)
Q Consensus 749 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~ 827 (941)
+||+|||+|+.....+. ........||+.|||||++.++.|+.++|||||||++|||+| |+.||...... +.
T Consensus 184 ~Ki~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~-~~- 256 (308)
T 4gt4_A 184 VKISDLGLFREVYAADY-----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ-DV- 256 (308)
T ss_dssp EEECCSCCBCGGGGGGC-----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH-HH-
T ss_pred EEECCcccceeccCCCc-----eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH-HH-
Confidence 99999999986543221 122344579999999999999999999999999999999999 89999765431 11
Q ss_pred HHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 828 NIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
...+..+...+.|++++..+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus 257 --------~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 257 --------VEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp --------HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred --------HHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 1123344555678888999999999999999999999999999998764
No 5
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.8e-51 Score=446.62 Aligned_cols=259 Identities=20% Similarity=0.324 Sum_probs=211.9
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
++|++.+.||+|+||+||+|+.. +|+.||||++..... ...+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46999999999999999999964 799999999875322 22457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
|||+||+|.+++.+.+ .+++..++.++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence 9999999999997654 4899999999999999999999999 9999999999999999999999999998764322
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... .+...
T Consensus 187 ~-----~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~---------------- 244 (311)
T 4aw0_A 187 K-----QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-GLIFA---------------- 244 (311)
T ss_dssp T-----CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHH----------------
T ss_pred C-----cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHH----------------
Confidence 1 1223456899999999999999999999999999999999999999975432 11100
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccC------CCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSM------LKH 918 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~------L~H 918 (941)
++ ..+ .+. -| ....+++.+||.+||+.||++|+|++|+ ++|
T Consensus 245 ------------~i-~~~---~~~-~p----------------~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~H 291 (311)
T 4aw0_A 245 ------------KI-IKL---EYD-FP----------------EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAH 291 (311)
T ss_dssp ------------HH-HHT---CCC-CC----------------TTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTS
T ss_pred ------------HH-HcC---CCC-CC----------------cccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCC
Confidence 01 100 000 00 1112334578999999999999999986 789
Q ss_pred CCCCCCCCC
Q 002289 919 PYVSSDVSG 927 (941)
Q Consensus 919 pwf~~~~~~ 927 (941)
|||++-.+.
T Consensus 292 p~F~~idw~ 300 (311)
T 4aw0_A 292 PFFESVTWE 300 (311)
T ss_dssp GGGTTCCCT
T ss_pred CCcCCCCHH
Confidence 999886554
No 6
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-51 Score=443.59 Aligned_cols=268 Identities=25% Similarity=0.447 Sum_probs=214.5
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
+...++|.+.++||+|+||+||+|++++ .||||+++... ....+.|.+|++++++++|||||+++|++.+ +..+|
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~i 108 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAI 108 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEE
T ss_pred EEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEE
Confidence 3445678889999999999999999753 59999987533 2335689999999999999999999999865 56899
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
|||||++|+|.++++... ..+++..++.|+.|||+||+|||+++ ||||||||+|||+++++++||+|||+|+....
T Consensus 109 VmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 109 VTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp EEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred EEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceeccc
Confidence 999999999999997543 45999999999999999999999998 99999999999999999999999999986543
Q ss_pred CCCCCccccccccccccCCCccccccccc---CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLT---HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
... ........||+.|||||++.+ ..|+.++|||||||++|||+||+.||....+........ .. ..
T Consensus 185 ~~~-----~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~-~~----~~ 254 (307)
T 3omv_A 185 WSG-----SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMV-GR----GY 254 (307)
T ss_dssp --------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHH-HT----TC
T ss_pred CCc-----ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHH-hc----CC
Confidence 221 223345679999999999964 468999999999999999999999997654432221111 11 11
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
..+.....+.+++..+.+++.+||+.+|++||++.++++.|+.+...+|+
T Consensus 255 ~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 255 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 12223345667888999999999999999999999999999988776654
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=7.9e-51 Score=459.03 Aligned_cols=265 Identities=22% Similarity=0.373 Sum_probs=217.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.+.|++.++||+|+||+||+|++. +|+.||||++........+.+.+|+++|++++|||||+++++|.+++..||||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 357999999999999999999975 6999999999876655667899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
|+||+|.+++... .+++..+..|+.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+......
T Consensus 230 ~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-- 301 (423)
T 4fie_A 230 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-- 301 (423)
T ss_dssp CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--
T ss_pred CCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCC--
Confidence 9999999999653 3899999999999999999999999 9999999999999999999999999998764321
Q ss_pred CccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGS 846 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (941)
......+||+.|||||++.+..|+.++|||||||++|||++|+.||....... ..
T Consensus 302 -----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-~~------------------- 356 (423)
T 4fie_A 302 -----PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK-AM------------------- 356 (423)
T ss_dssp -----CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HH-------------------
T ss_pred -----ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HH-------------------
Confidence 22345689999999999999999999999999999999999999997543211 10
Q ss_pred CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 847 YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 847 ~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
+.+......... ......+++.+||.+||+.||++|+||+|+|+||||+....
T Consensus 357 ----------~~i~~~~~~~~~-----------------~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~~ 409 (423)
T 4fie_A 357 ----------KMIRDNLPPRLK-----------------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP 409 (423)
T ss_dssp ----------HHHHHSCCCCCS-----------------CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred ----------HHHHcCCCCCCc-----------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCCC
Confidence 111110000000 01122334457999999999999999999999999987554
Q ss_pred CCcccc
Q 002289 927 GSNLVS 932 (941)
Q Consensus 927 ~~~~~~ 932 (941)
-+.+++
T Consensus 410 p~~l~p 415 (423)
T 4fie_A 410 PASIVP 415 (423)
T ss_dssp GGGTGG
T ss_pred Cccccc
Confidence 444444
No 8
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=8.4e-52 Score=449.26 Aligned_cols=270 Identities=22% Similarity=0.303 Sum_probs=208.5
Q ss_pred cCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
++|++.+.||+|+||+||+|+.. +++.||||+++..... ....+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999852 4789999998754322 23468899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
|||||+||+|.+++.+.. .+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+....
T Consensus 104 vmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 999999999999997654 4899999999999999999999999 99999999999999999999999999986432
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
.. .......||+.|||||++.+..|+.++||||+||++|||+||+.||...... +.... +...
T Consensus 179 ~~-------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~-~~~~~---------i~~~ 241 (304)
T 3ubd_A 179 HE-------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK-ETMTM---------ILKA 241 (304)
T ss_dssp ---------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHH---------HHHC
T ss_pred CC-------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH-HHHHH---------HHcC
Confidence 21 2234567999999999999999999999999999999999999999754321 11110 0000
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCC-----ccCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSS-----SSMLK 917 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa-----~e~L~ 917 (941)
...+|.. .++++.+||.+||+.||++|+|| +|+++
T Consensus 242 -~~~~p~~---------------------------------------~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 242 -KLGMPQF---------------------------------------LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp -CCCCCTT---------------------------------------SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred -CCCCCCc---------------------------------------CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 0011111 12234467888888899999986 58999
Q ss_pred CCCCCCCCCCCccccccccccCC
Q 002289 918 HPYVSSDVSGSNLVSGVIPTITP 940 (941)
Q Consensus 918 Hpwf~~~~~~~~~~~~~~~~~~~ 940 (941)
||||++..+..-.-..+.||+.|
T Consensus 282 Hp~f~~idw~~l~~~~~~pP~~P 304 (304)
T 3ubd_A 282 HSFFSTIDWNKLYRREIHPPFKP 304 (304)
T ss_dssp SGGGTTCCHHHHHTTCSCCSSCC
T ss_pred CccccCCCHHHHHhCCCCcCcCC
Confidence 99998865433333445677765
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.5e-50 Score=440.88 Aligned_cols=256 Identities=21% Similarity=0.268 Sum_probs=209.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.+.|++.++||+|+||+||+|++. +|+.||||+++... ...+|++++++++|||||++++++.+++..||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 346778889999999999999975 69999999997532 235799999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC-cEEEeeeccccccCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF-TAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~-~~kl~DFGla~~~~~~~~ 765 (941)
|+||+|.+++++.+ .+++..++.++.||+.||+|||+++ ||||||||+|||++.++ .+||+|||+|+.......
T Consensus 132 ~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence 99999999997654 4899999999999999999999999 99999999999999987 699999999987643321
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC-
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM- 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~- 844 (941)
.. ........+||+.|||||++.+..|+.++||||+||++|||+||+.||....... .+..+.....
T Consensus 207 ~~--~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~----------~~~~i~~~~~~ 274 (336)
T 4g3f_A 207 GK--SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP----------LCLKIASEPPP 274 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC----------CHHHHHHSCCG
T ss_pred cc--ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH----------HHHHHHcCCCC
Confidence 11 0112234579999999999999999999999999999999999999997543211 1111111111
Q ss_pred -CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 845 -GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 845 -~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..++..++..+.+++.+||+.||.+||++.|+++++.....
T Consensus 275 ~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 23456677889999999999999999999999999887643
No 10
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.7e-50 Score=446.28 Aligned_cols=251 Identities=23% Similarity=0.388 Sum_probs=209.0
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
++|++.+.||+|+||+||+|+.. +|+.||||++..... ...+.+.+|++++++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999965 699999999975432 234678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
||+||+|.+++..+....+++..++.|+.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-- 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-- 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHH--
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCC--
Confidence 999999999998776667899999999999999999999999 999999999999999999999999999865321
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||..... .+. +..+..+..+
T Consensus 179 -----~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-~~~---------~~~i~~~~~~ 243 (350)
T 4b9d_A 179 -----VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-KNL---------VLKIISGSFP 243 (350)
T ss_dssp -----HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHH---------HHHHHHTCCC
T ss_pred -----cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-HHH---------HHHHHcCCCC
Confidence 1223456799999999999999999999999999999999999999976543 221 1223334444
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
..+..++.++.+++.+|++.||++||++.|++++
T Consensus 244 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 244 PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 5566677788889999999999999999988753
No 11
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2.4e-50 Score=435.73 Aligned_cols=253 Identities=26% Similarity=0.441 Sum_probs=199.1
Q ss_pred CccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeecccc----CCcEEEEE
Q 002289 612 NSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQMLVY 684 (941)
Q Consensus 612 ~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~----~~~~~LV~ 684 (941)
+..++||+|+||+||+|.+. +++.||+|++.... ....+.|.+|++++++++|||||+++++|.+ ++..+|||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 45678999999999999975 68999999987532 2234679999999999999999999999854 35689999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC-CCcEEEeeeccccccCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH-KFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~-~~~~kl~DFGla~~~~~~ 763 (941)
|||++|+|.+++.+.. .+++..++.++.||+.||+|||+++ ++||||||||+|||++. ++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~- 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA- 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT-
T ss_pred eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCC-
Confidence 9999999999997654 5899999999999999999999875 46999999999999985 78999999999985422
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|||||++.+ +|+.++|||||||++|||+||+.||....+........ ..+
T Consensus 185 --------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i---------~~~- 245 (290)
T 3fpq_A 185 --------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV---------TSG- 245 (290)
T ss_dssp --------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH---------TTT-
T ss_pred --------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHH---------HcC-
Confidence 22345679999999998865 69999999999999999999999997544322211110 000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+|.. ......+++.+||.+||+.||++|||++|+|+||||+.
T Consensus 246 -------------------------~~~~~------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~ 288 (290)
T 3fpq_A 246 -------------------------VKPAS------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE 288 (290)
T ss_dssp -------------------------CCCGG------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred -------------------------CCCCC------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence 00100 00011223447888899999999999999999999986
Q ss_pred C
Q 002289 924 D 924 (941)
Q Consensus 924 ~ 924 (941)
+
T Consensus 289 ~ 289 (290)
T 3fpq_A 289 E 289 (290)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=8.7e-51 Score=435.32 Aligned_cols=253 Identities=22% Similarity=0.314 Sum_probs=195.4
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
++|++.+.||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|++++++++||||+++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999964 799999999875432 22457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+ +|+|.+++.+++ .+++..++.++.||+.||+|||+++ |+||||||+|||+++++++||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~- 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG- 165 (275)
T ss_dssp ECC-CEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred eCC-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCCC-
Confidence 999 789999997654 5899999999999999999999999 999999999999999999999999999865322
Q ss_pred CCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|||||++.+..+ +.++||||+||++|||+||+.||..... ...
T Consensus 166 -------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-~~~----------------- 220 (275)
T 3hyh_A 166 -------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-PVL----------------- 220 (275)
T ss_dssp ----------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHH-----------------
T ss_pred -------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-HHH-----------------
Confidence 22344679999999999998876 5799999999999999999999965332 110
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+.+....-.-| ...++++.+||.+||+.||++|+|++|+|+||||+.
T Consensus 221 ------------~~~i~~~~~~~p--------------------~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~ 268 (275)
T 3hyh_A 221 ------------FKNISNGVYTLP--------------------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV 268 (275)
T ss_dssp ------------HHHHHHTCCCCC--------------------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred ------------HHHHHcCCCCCC--------------------CCCCHHHHHHHHHHccCChhHCcCHHHHHcCccccc
Confidence 111111100000 011233457899999999999999999999999986
Q ss_pred CC
Q 002289 924 DV 925 (941)
Q Consensus 924 ~~ 925 (941)
+.
T Consensus 269 ~~ 270 (275)
T 3hyh_A 269 DL 270 (275)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 13
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2.9e-49 Score=439.94 Aligned_cols=272 Identities=25% Similarity=0.416 Sum_probs=225.5
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEeCC------CcEEEEEEeccCCchh-hHhHHHHHHHHHhcCC-Cceeee
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSLQG-EKEFLTEIQFLSRLHH-RNLVSL 670 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h-~nIv~l 670 (941)
+..++|+...++|++.+.||+|+||+||+|.+.. ++.||||+++...... .+.|.+|+++|++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3445677888999999999999999999998632 4689999998654433 4679999999999965 899999
Q ss_pred eeccccC-CcEEEEEecCCCCCHHHHHhhcC--------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEecc
Q 002289 671 VGYCDEE-GEQMLVYEFMSNGTLRDQLSAKS--------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRD 735 (941)
Q Consensus 671 ~~~~~~~-~~~~LV~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~D 735 (941)
+|+|.+. +..++|||||++|+|.++|+... ...+++..++.++.|||+||+|||+++ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCc
Confidence 9998664 56899999999999999997532 345899999999999999999999999 99999
Q ss_pred CCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CC
Q 002289 736 IKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GM 814 (941)
Q Consensus 736 Lkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~ 814 (941)
|||+|||+++++++||+|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+| |+
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~ 285 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPD-----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 285 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCC-----ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCC
Confidence 999999999999999999999986643221 122345678999999999999999999999999999999998 99
Q ss_pred CCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 815 QPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 815 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
.||........... .+..+.....|+.++.++.+++..||+.+|++||++.+++++|+++.+.-
T Consensus 286 ~Pf~~~~~~~~~~~---------~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 286 SPYPGVKIDEEFCR---------RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CSSTTCCCSHHHHH---------HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHH---------HHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence 99976443221111 12234445667778889999999999999999999999999999887643
No 14
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=8.9e-49 Score=438.93 Aligned_cols=304 Identities=18% Similarity=0.265 Sum_probs=213.3
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcE
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~ 680 (941)
...++|++.++||+|+||+||+|+.+ +++.||||++.... ...++.+|+++++.+ +||||+++++++.+.++.
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 34688999999999999999999853 46889999987543 345688999999998 699999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC-CcEEEeeeccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK-FTAKVADFGLSRL 759 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~-~~~kl~DFGla~~ 759 (941)
++||||+++|+|.+++. .+++..++.++.|++.||+|||+++ |+||||||+|||++.+ +.+||+|||+|+.
T Consensus 96 ~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGla~~ 167 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGLAQG 167 (361)
T ss_dssp EEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence 99999999999999983 3889999999999999999999999 9999999999999877 7999999999986
Q ss_pred cCCCCCCCc---------------------cccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCC
Q 002289 760 APVPDIEGI---------------------VPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPI 817 (941)
Q Consensus 760 ~~~~~~~~~---------------------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf 817 (941)
......... .........+||+.|||||++.+. .|+.++||||+||++|||++|+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence 543221100 001122345799999999999875 5899999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhccc------hhhhc---CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 818 SHGKNIVREVNIAYQSSMM------FSVID---GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
..+.+..+........... ..... ......|......+.+.+...-...|. ...-..........+.
T Consensus 248 ~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~ 323 (361)
T 4f9c_A 248 YKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPK----LTSDIQGHATNLEGWN 323 (361)
T ss_dssp SCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC--------------------------CT
T ss_pred CCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccc----cccccccccccccccc
Confidence 8776654443322210000 00000 000011111111111111111111111 1111111111112233
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 889 ESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 889 ~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..++++.|||.+||++||++|+||+|+|+||||++
T Consensus 324 ~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~ 358 (361)
T 4f9c_A 324 EVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKD 358 (361)
T ss_dssp TCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTT
T ss_pred cCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCC
Confidence 44566789999999999999999999999999976
No 15
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=440.43 Aligned_cols=287 Identities=22% Similarity=0.358 Sum_probs=215.2
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccc------cCCc
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCD------EEGE 679 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~------~~~~ 679 (941)
++|++.+.||+|+||+||+|++. +|+.||||+++.... ...+.+.+|+++|+.++|||||++++++. +.+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999975 799999999975432 33467889999999999999999999864 3467
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.|||||||+ |+|.+++... ..+++..++.++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+.
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeee
Confidence 899999995 7899999654 45999999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
+...... ........+||+.|||||++.+. .++.++||||+||++|||++|+.||...... +........
T Consensus 208 ~~~~~~~---~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~----- 278 (398)
T 4b99_A 208 LCTSPAE---HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMV----- 278 (398)
T ss_dssp C----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHH-----
T ss_pred cccCccc---cccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHh-----
Confidence 6432111 12234557899999999998875 5699999999999999999999999765432 222211110
Q ss_pred hhcCCCCCCChHHHHHH-HHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCC
Q 002289 839 VIDGNMGSYPSECVEKF-IKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLK 917 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l-~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~ 917 (941)
. +..+......+ .......+...|...|.. +...++..++++.|||.+||++||++|+||+|+|+
T Consensus 279 -~----g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 279 -L----GTPSPAVIQAVGAERVRAYIQSLPPRQPVP---------WETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp -H----CCCCGGGTC-----CHHHHHHSSCCCCCCC---------HHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -c----CCCChHHhhhhhhhhhhhhhhcCCCcCCCC---------HHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 0 01111100000 001112222333333321 11234555667789999999999999999999999
Q ss_pred CCCCCCC
Q 002289 918 HPYVSSD 924 (941)
Q Consensus 918 Hpwf~~~ 924 (941)
||||+.-
T Consensus 345 Hp~f~~~ 351 (398)
T 4b99_A 345 HPFLAKY 351 (398)
T ss_dssp SGGGTTT
T ss_pred CHhhCcC
Confidence 9999863
No 16
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=5.1e-48 Score=421.35 Aligned_cols=263 Identities=22% Similarity=0.356 Sum_probs=192.3
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccCC--------
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG-------- 678 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-------- 678 (941)
++|++.+.||+|+||+||+|+.. +|+.||||+++..... ..+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 45889999999999999999975 7999999998754433 3467899999999999999999999986543
Q ss_pred ----cEEEEEecCCCCCHHHHHhhcCC-CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEee
Q 002289 679 ----EQMLVYEFMSNGTLRDQLSAKSK-EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVAD 753 (941)
Q Consensus 679 ----~~~LV~e~~~~gsL~~~l~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~D 753 (941)
..|+|||||++|+|.+++..+.. ...++..++.|+.||++||+|||+++ ||||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEcc
Confidence 36899999999999999976543 23566778899999999999999999 99999999999999999999999
Q ss_pred eccccccCCCCCCCc-----cccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 002289 754 FGLSRLAPVPDIEGI-----VPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVN 828 (941)
Q Consensus 754 FGla~~~~~~~~~~~-----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~ 828 (941)
||+|+.......... ......+..+||+.|||||++.+..|+.++|||||||++|||++ ||....+......
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~ 238 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLT 238 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHH
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHH
Confidence 999987654322111 01112344679999999999999999999999999999999996 7753221111000
Q ss_pred HHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCC
Q 002289 829 IAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEET 908 (941)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~ 908 (941)
.+.. ..+|+. ..+. .+...+||.+||+.||++
T Consensus 239 ---------~~~~---~~~p~~----------------------~~~~--------------~~~~~~li~~~L~~dP~~ 270 (299)
T 4g31_A 239 ---------DVRN---LKFPPL----------------------FTQK--------------YPCEYVMVQDMLSPSPME 270 (299)
T ss_dssp ---------HHHT---TCCCHH----------------------HHHH--------------CHHHHHHHHHHTCSSGGG
T ss_pred ---------HHhc---CCCCCC----------------------Cccc--------------CHHHHHHHHHHcCCChhH
Confidence 0000 011111 0000 111236888999999999
Q ss_pred CCCCccCCCCCCCCCCC
Q 002289 909 PPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 909 R~sa~e~L~Hpwf~~~~ 925 (941)
||||.|+|+||||++-.
T Consensus 271 Rps~~eil~h~~~~~~~ 287 (299)
T 4g31_A 271 RPEAINIIENAVFEDLD 287 (299)
T ss_dssp SCCHHHHHTSGGGCCC-
T ss_pred CcCHHHHhcCHhhCCCC
Confidence 99999999999998643
No 17
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.2e-47 Score=418.27 Aligned_cols=261 Identities=24% Similarity=0.349 Sum_probs=199.7
Q ss_pred cCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCC----cEEEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQMLVY 684 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~----~~~LV~ 684 (941)
.+|.+.++||+|+||+||+|++ +|+.||||+++.... ....+..|+..+.+++|||||+++|+|.+++ ..+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 3567788999999999999998 689999999975321 1223345666667889999999999997654 579999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-----CCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE-----ADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
|||++|+|.++++.. .+++..+.+++.|+++||+|||++ ..++||||||||+|||++.++++||+|||+|+.
T Consensus 81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred cCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence 999999999999764 489999999999999999999987 133499999999999999999999999999987
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccC------CCCchhHhHHHHHHHHHHHhCCCCCCCCch-----------
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH------KLTDKSDVYSLGVVFLELLTGMQPISHGKN----------- 822 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDVwSlG~ll~elltG~~Pf~~~~~----------- 822 (941)
....... .........||+.|||||++.+. .++.++|||||||++|||+||+.||.....
T Consensus 158 ~~~~~~~---~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~ 234 (303)
T 3hmm_A 158 HDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234 (303)
T ss_dssp EETTTTE---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred ccCCCCc---eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence 6432211 01122345799999999999764 367799999999999999999877642211
Q ss_pred --hHHHHHHHHhhccchhhhcCC-CCCCC-----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 823 --IVREVNIAYQSSMMFSVIDGN-MGSYP-----SECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 823 --~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
........ +.... .+..| .+++..+.+++.+||+.||++|||+.++++.|+++.+
T Consensus 235 ~~~~~~~~~~--------~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 235 DPSVEEMRKV--------VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp SCCHHHHHHH--------HTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------HhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 11111111 11111 12222 3567789999999999999999999999999998765
No 18
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.7e-46 Score=438.80 Aligned_cols=272 Identities=21% Similarity=0.308 Sum_probs=209.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHH---HHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLT---EIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~---E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||+||+|+.. +|+.||||+++..... ....+.+ ++.+++.++|||||+++++|.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 367999999999999999999975 6999999998643221 1223333 45677778999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
|+|||||+||+|.+++.+.+ .+++..++.++.||+.||+|||+++ ||||||||+|||++.+|.+||+|||+|+..
T Consensus 268 ylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeeec
Confidence 99999999999999997654 4899999999999999999999999 999999999999999999999999999875
Q ss_pred CCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
... .....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||........
T Consensus 343 ~~~---------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~-------------- 399 (689)
T 3v5w_A 343 SKK---------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK-------------- 399 (689)
T ss_dssp SSC---------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCH--------------
T ss_pred CCC---------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH--------------
Confidence 432 2234579999999999974 5799999999999999999999999964221000
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCC-----Ccc
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPS-----SSS 914 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~s-----a~e 914 (941)
..+.+.+ +...+ .-| ...++++.+||.+||+.||++|++ |+|
T Consensus 400 -------------~~i~~~i---~~~~~-~~p----------------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~e 446 (689)
T 3v5w_A 400 -------------HEIDRMT---LTMAV-ELP----------------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQE 446 (689)
T ss_dssp -------------HHHHHHH---HHCCC-CCC----------------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHH
T ss_pred -------------HHHHHhh---cCCCC-CCC----------------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHH
Confidence 0000111 11111 001 112234457888889999999988 689
Q ss_pred CCCCCCCCCCCCCCccccccccccCC
Q 002289 915 MLKHPYVSSDVSGSNLVSGVIPTITP 940 (941)
Q Consensus 915 ~L~Hpwf~~~~~~~~~~~~~~~~~~~ 940 (941)
+++||||++-.+..-....+.||+.|
T Consensus 447 i~~HpfF~~idW~~l~~~~~~pP~~P 472 (689)
T 3v5w_A 447 VKESPFFRSLDWQMVFLQKYPPPLIP 472 (689)
T ss_dssp HTTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred HhcCccccCCCHHHHHcCCCCcCccC
Confidence 99999999866643333334444444
No 19
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.1e-45 Score=436.27 Aligned_cols=260 Identities=22% Similarity=0.361 Sum_probs=215.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++........+.+.+|+++|+.++||||++++++|.+.+..++||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 368999999999999999999975 6999999999876666667899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC--CcEEEeeeccccccCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK--FTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~--~~~kl~DFGla~~~~~~~ 764 (941)
|+||+|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+|||++.+ +.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~- 310 (573)
T 3uto_A 236 MSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK- 310 (573)
T ss_dssp CCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT-
T ss_pred cCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccCC-
Confidence 9999999999643 245999999999999999999999999 9999999999999854 89999999999876432
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|||||++.+..|+.++||||+||++|||++|+.||........ ..
T Consensus 311 -------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~-~~---------------- 366 (573)
T 3uto_A 311 -------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET-LR---------------- 366 (573)
T ss_dssp -------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HH----------------
T ss_pred -------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH-HH----------------
Confidence 223455799999999999999999999999999999999999999975443111 10
Q ss_pred CCCChHHHHHHHHHHHHh-cccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKC-CQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c-~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+..+ +...+. .++..++.+.+||.+||+.||++|+||+|+|+||||+.
T Consensus 367 -------------~i~~~~~~~~~~-----------------~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~ 416 (573)
T 3uto_A 367 -------------NVKSCDWNMDDS-----------------AFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTP 416 (573)
T ss_dssp -------------HHHTTCCCCCSG-----------------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSC
T ss_pred -------------HHHhCCCCCCcc-----------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCC
Confidence 01111 000000 01122334568999999999999999999999999986
Q ss_pred CCC
Q 002289 924 DVS 926 (941)
Q Consensus 924 ~~~ 926 (941)
..+
T Consensus 417 ~~~ 419 (573)
T 3uto_A 417 GNA 419 (573)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 20
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.2e-42 Score=386.17 Aligned_cols=260 Identities=25% Similarity=0.346 Sum_probs=210.5
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||.||+|++ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 46899999999999999999997 579999999987532 233467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++|+|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 94 e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~- 167 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVG- 167 (328)
T ss_dssp CCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS-
T ss_pred ECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCCC-
Confidence 9999999999997654 4889999999999999999999999 999999999999999999999999999765322
Q ss_pred CCCccccccccccccCCCcccccccccCCCC-chhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLT-DKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|+|||++.+..+. .++||||+||++|||++|+.||...... +..
T Consensus 168 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~---------------- 223 (328)
T 3fe3_A 168 -------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK-ELR---------------- 223 (328)
T ss_dssp -------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHH----------------
T ss_pred -------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH-HHH----------------
Confidence 223456799999999999988875 7899999999999999999999654321 100
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
+.+....... |. ...+.+.+|+++||..||++|||++|+++||||+.
T Consensus 224 -------------~~i~~~~~~~----p~----------------~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~ 270 (328)
T 3fe3_A 224 -------------ERVLRGKYRI----PF----------------YMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINA 270 (328)
T ss_dssp -------------HHHHHCCCCC----CT----------------TSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTT
T ss_pred -------------HHHHhCCCCC----CC----------------CCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcC
Confidence 0011000000 10 11223346888899999999999999999999987
Q ss_pred CCCCCcc
Q 002289 924 DVSGSNL 930 (941)
Q Consensus 924 ~~~~~~~ 930 (941)
......+
T Consensus 271 ~~~~~~~ 277 (328)
T 3fe3_A 271 GHEEDEL 277 (328)
T ss_dssp TCTTCCC
T ss_pred CCccccc
Confidence 5544443
No 21
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=7.4e-42 Score=374.78 Aligned_cols=261 Identities=22% Similarity=0.354 Sum_probs=212.1
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|++.+.||+|+||+||+|.. .+++.||||++........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46899999999999999999996 47899999998765555567789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++|+|.+++... .+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||++.......
T Consensus 99 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 170 (297)
T 3fxz_A 99 LAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-- 170 (297)
T ss_dssp CTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTT--
T ss_pred CCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc--
Confidence 9999999999764 4889999999999999999999999 9999999999999999999999999998654322
Q ss_pred CccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGS 846 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (941)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||............
T Consensus 171 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~----------------- 228 (297)
T 3fxz_A 171 -----SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLI----------------- 228 (297)
T ss_dssp -----CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-----------------
T ss_pred -----cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-----------------
Confidence 1233456999999999999999999999999999999999999999754432211110
Q ss_pred CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 847 YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 847 ~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
.... .+... .. ........+||.+||..||++|||++|+|+||||+....
T Consensus 229 ------------~~~~---~~~~~-~~--------------~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~ 278 (297)
T 3fxz_A 229 ------------ATNG---TPELQ-NP--------------EKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKP 278 (297)
T ss_dssp ------------HHHC---SCCCS-CG--------------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred ------------HhCC---CCCCC-Cc--------------cccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccCc
Confidence 0000 00000 00 001112346888899999999999999999999987654
Q ss_pred CC
Q 002289 927 GS 928 (941)
Q Consensus 927 ~~ 928 (941)
-+
T Consensus 279 ~~ 280 (297)
T 3fxz_A 279 LS 280 (297)
T ss_dssp GG
T ss_pred cc
Confidence 33
No 22
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.6e-42 Score=381.59 Aligned_cols=284 Identities=43% Similarity=0.754 Sum_probs=233.1
Q ss_pred cCCccccchHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeee
Q 002289 593 IDGVRSFTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLV 671 (941)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~ 671 (941)
......+++.++....++|++.+.||+|+||+||+|...+|+.||||++...... ....+.+|+++++.++||||++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 14 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp -CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred cCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence 3456778999999999999999999999999999999888999999998764433 234789999999999999999999
Q ss_pred eccccCCcEEEEEecCCCCCHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcE
Q 002289 672 GYCDEEGEQMLVYEFMSNGTLRDQLSAKS--KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTA 749 (941)
Q Consensus 672 ~~~~~~~~~~LV~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~ 749 (941)
+++...+..++||||+++|+|.+++.... ...+++..++.++.|++.||+|||++..++|+||||||+|||++.++.+
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~ 173 (326)
T 3uim_A 94 GFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA 173 (326)
T ss_dssp EEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCE
T ss_pred EEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCE
Confidence 99999999999999999999999997643 3459999999999999999999999922229999999999999999999
Q ss_pred EEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCC-------Cch
Q 002289 750 KVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISH-------GKN 822 (941)
Q Consensus 750 kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~-------~~~ 822 (941)
||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++|+.||.. ...
T Consensus 174 kl~Dfg~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~ 247 (326)
T 3uim_A 174 VVGDFGLAKLMDYKD------THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM 247 (326)
T ss_dssp EECCCSSCEECCSSS------SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSB
T ss_pred EeccCccccccCccc------ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchh
Confidence 999999998664322 2223445699999999999999999999999999999999999999951 112
Q ss_pred hHHHHHHHHhhccchhhhcCCC-CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 002289 823 IVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELES 882 (941)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~ 882 (941)
..++..............+... ..++.+.+..+.+++..|++.+|.+||++.+++++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp HHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 2233322222223333333322 34678889999999999999999999999999999985
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-42 Score=380.87 Aligned_cols=281 Identities=30% Similarity=0.511 Sum_probs=257.1
Q ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCC-CCCCceEecCCCCCCCcceeeEEEecCCCCCc--cCCccccCCCC
Q 002289 31 ITDPIEVSALRSIKKSLVDDYSKLSNWNRGDPCT-SNWTGVLCFNTTMDDGYLHLRELQLLNLNLSG--NLSPEIGRLSY 107 (941)
Q Consensus 31 ~~~~~d~~aL~~~k~~~~~~~~~~~~w~~~~~c~-~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~--~~~~~l~~l~~ 107 (941)
.|+++|.+||++||+++.++. .+.+|..+++|| |.|.||+|...+ ...+|++|+|++++++| .+|+.|+++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 478899999999999998765 678998655543 459999997543 12479999999999999 89999999999
Q ss_pred CCEEEccc-CCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecc
Q 002289 108 LTILDFMW-NKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (941)
Q Consensus 108 L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 186 (941)
|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++|+|++|.+++.+|..|..+++|++|+|+
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCchhccCCC-ccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcC
Q 002289 187 NNSISGQIPPELSRLP-SLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 187 ~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
+|++++.+|..++.++ +|++|+|++|++++.+|..+..++ |+.|+|++|++++ ..|..|..+++|+.|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHHHhcCCCCCEEECCCCceee
Confidence 9999999999999998 999999999999999999999997 9999999999998 689999999999999999999998
Q ss_pred CCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcc
Q 002289 266 PMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 325 (941)
Q Consensus 266 ~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 325 (941)
.++.+.. ..+|++|+|++|+|++.+|..|..+++|+.|+|++|+++|.+|..
T Consensus 236 ~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 236 DLGKVGL--------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp BGGGCCC--------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ecCcccc--------cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 7765433 356799999999999999999999999999999999999988876
No 24
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=9.2e-42 Score=378.39 Aligned_cols=278 Identities=43% Similarity=0.722 Sum_probs=231.8
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
+.++...+++|++.+.||+|+||+||+|++++++.||||++........+.+.+|+++++.++||||+++++++...+..
T Consensus 31 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 110 (321)
T 2qkw_B 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM 110 (321)
T ss_dssp CSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred HHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence 34445577899999999999999999999888999999998876666667899999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKS--KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 111 ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp EEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred EEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeeccccc
Confidence 99999999999999996543 235899999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc-----hhHHHHHHHHhh
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK-----NIVREVNIAYQS 833 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~-----~~~~~~~~~~~~ 833 (941)
....... ........||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....+.......
T Consensus 188 ~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (321)
T 2qkw_B 188 KGTELDQ-----THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNN 262 (321)
T ss_dssp ECSSSSC-----CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTT
T ss_pred ccccccc-----cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccc
Confidence 6432211 122334568999999999999999999999999999999999999996432 222332222233
Q ss_pred ccchhhhcCCC-CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 834 SMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 834 ~~~~~~~~~~~-~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
..+...++... ...+.+++..+.+++.+||+.+|++||++.++++.|+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 263 GQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp TCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 33333444333 346788999999999999999999999999999999988764
No 25
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.3e-42 Score=381.46 Aligned_cols=277 Identities=24% Similarity=0.346 Sum_probs=209.8
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
..++|++.+.||+|+||+||+|++.+|+.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 35789999999999999999999988999999998754322 2467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||++ |+|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 99 e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 99 EFME-KDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp ECCS-EEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred cCCC-CCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 9996 58888886543 45899999999999999999999999 9999999999999999999999999998654221
Q ss_pred CCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...........
T Consensus 174 -------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~--------------- 231 (311)
T 3niz_A 174 -------RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPK--------------- 231 (311)
T ss_dssp -------C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHH---------------
T ss_pred -------ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHH---------------
Confidence 22234568999999999876 5689999999999999999999999975443211111
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH---------HhHhhCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE---------SIWNMMPESDTKTPEFINSEHTSKEETPPSSSS 914 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~---------~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e 914 (941)
+...+-...|...+...++....+ .+....+...+++.+||.+||.+||++|||++|
T Consensus 232 --------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e 297 (311)
T 3niz_A 232 --------------IFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARD 297 (311)
T ss_dssp --------------HHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred --------------HHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHH
Confidence 011111111111111111000000 001112333445568999999999999999999
Q ss_pred CCCCCCCCCC
Q 002289 915 MLKHPYVSSD 924 (941)
Q Consensus 915 ~L~Hpwf~~~ 924 (941)
+|+||||++.
T Consensus 298 ll~hp~f~~~ 307 (311)
T 3niz_A 298 AMNHPYFKDL 307 (311)
T ss_dssp HHTSGGGTTS
T ss_pred HhcCcccccC
Confidence 9999999873
No 26
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.4e-42 Score=393.94 Aligned_cols=280 Identities=20% Similarity=0.306 Sum_probs=212.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.++||+|+||+||+|+.+ +++.||+|+++.... ...+.+.+|..+++++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 467889999999999999999975 688999999875422 2234678899999887 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+....
T Consensus 131 V~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 999999999999997653 4899999999999999999999999 99999999999999999999999999975322
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
. ........||+.|+|||++.+..++.++|||||||++|||++|+.||..........
T Consensus 206 ~-------~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~--------------- 263 (396)
T 4dc2_A 206 P-------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD--------------- 263 (396)
T ss_dssp T-------TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC--------------------
T ss_pred C-------CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccc---------------
Confidence 1 223345679999999999999999999999999999999999999996322100000
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCC------ccCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSS------SSML 916 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa------~e~L 916 (941)
... ...+.+.+... .+ . .....++.+.+||++||+.||++|+++ +|++
T Consensus 264 ---~~~---~~~~~~~i~~~---~~-~----------------~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~ 317 (396)
T 4dc2_A 264 ---QNT---EDYLFQVILEK---QI-R----------------IPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQ 317 (396)
T ss_dssp ----CC---HHHHHHHHHHC---CC-C----------------CCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHH
T ss_pred ---hhh---HHHHHHHHhcc---cc-C----------------CCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHh
Confidence 000 00111111110 00 0 001122334578888899999999987 5899
Q ss_pred CCCCCCCCCCCCccccccccccCC
Q 002289 917 KHPYVSSDVSGSNLVSGVIPTITP 940 (941)
Q Consensus 917 ~Hpwf~~~~~~~~~~~~~~~~~~~ 940 (941)
+||||++..+....-..+.|++.|
T Consensus 318 ~Hpff~~i~w~~l~~~~~~pp~~p 341 (396)
T 4dc2_A 318 GHPFFRNVDWDMMEQKQVVPPFKP 341 (396)
T ss_dssp HSTTTTTCCHHHHHTTCSCCSCCC
T ss_pred cCccccCCCHHHHHcCCCCCCCcC
Confidence 999998755433223334455554
No 27
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.7e-43 Score=390.94 Aligned_cols=203 Identities=26% Similarity=0.416 Sum_probs=173.1
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 681 (941)
..++|++.+.||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|.++++.+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 4578999999999999999999975 689999999875321 2235678899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+...
T Consensus 101 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 9999999999999997653 4899999999999999999999999 9999999999999999999999999997532
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 176 ~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~ 228 (353)
T 3txo_A 176 CN-------GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN 228 (353)
T ss_dssp C----------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cC-------CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC
Confidence 21 122345679999999999999999999999999999999999999997543
No 28
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.9e-42 Score=395.07 Aligned_cols=281 Identities=19% Similarity=0.262 Sum_probs=218.1
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeecccc
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 676 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 676 (941)
..++....++|++.+.||+|+||+||+|+.. +++.||+|+++.... ...+.+.+|+++++.++||||+++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 3455566789999999999999999999975 689999999865221 123458899999999999999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecc
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGL 756 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGl 756 (941)
.+..++||||+++|+|.++++.. .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~ 214 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGT 214 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccce
Confidence 99999999999999999999653 4889999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCC----CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHK----LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
|+...... ........||+.|+|||++.+.. ++.++|||||||++|||++|+.||........ ..
T Consensus 215 a~~~~~~~------~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~-~~---- 283 (410)
T 3v8s_A 215 CMKMNKEG------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT-YS---- 283 (410)
T ss_dssp CEECCTTS------EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HH----
T ss_pred eEeeccCC------cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH-HH----
Confidence 98654321 11233567999999999998765 78899999999999999999999975432111 11
Q ss_pred hccchhhhcCCCCCCChHHHHHHHHHHHHhcc-cCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCC--C
Q 002289 833 SSMMFSVIDGNMGSYPSECVEKFIKLALKCCQ-DETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEET--P 909 (941)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~-~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~--R 909 (941)
+++..-.. ..|. .....+.+.+||.+||+.+|++ |
T Consensus 284 ------------------------~i~~~~~~~~~p~------------------~~~~s~~~~~li~~lL~~~~~rlgR 321 (410)
T 3v8s_A 284 ------------------------KIMNHKNSLTFPD------------------DNDISKEAKNLICAFLTDREVRLGR 321 (410)
T ss_dssp ------------------------HHHTHHHHCCCCT------------------TCCCCHHHHHHHHHHSSCGGGCTTS
T ss_pred ------------------------HHHhccccccCCC------------------cccccHHHHHHHHHHccChhhhCCC
Confidence 00000000 0000 0012233446777788877777 8
Q ss_pred CCCccCCCCCCCCCCCCCCccccccccccCC
Q 002289 910 PSSSSMLKHPYVSSDVSGSNLVSGVIPTITP 940 (941)
Q Consensus 910 ~sa~e~L~Hpwf~~~~~~~~~~~~~~~~~~~ 940 (941)
++++|+++||||++..+.......+.||+.|
T Consensus 322 ~~~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p 352 (410)
T 3v8s_A 322 NGVEEIKRHLFFKNDQWAWETLRDTVAPVVP 352 (410)
T ss_dssp SCHHHHHTSGGGCCSSCCSTTGGGSCCSCCC
T ss_pred CCHHHHhcCccccCCCHHHHhhcccCCCCCC
Confidence 8888999999998876655555555666655
No 29
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=5.2e-42 Score=382.14 Aligned_cols=202 Identities=26% Similarity=0.343 Sum_probs=177.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||+||+|+.. +|+.||+|+++... ....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 367889999999999999999975 68999999987532 12245688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 84 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp EECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 99999999999997643 4889999999999999999999999 999999999999999999999999999753221
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 159 -------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 209 (337)
T 1o6l_A 159 -------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD 209 (337)
T ss_dssp -------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred -------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC
Confidence 122345679999999999999999999999999999999999999997543
No 30
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.7e-42 Score=396.80 Aligned_cols=272 Identities=24% Similarity=0.273 Sum_probs=215.5
Q ss_pred chHHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccc
Q 002289 600 TYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCD 675 (941)
Q Consensus 600 ~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~ 675 (941)
.+.++....++|++.++||+|+||+||+|+.. +++.||+|+++..... ..+.+.+|..+++.++||||++++++|.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 45566677899999999999999999999976 5889999998753221 1234889999999999999999999999
Q ss_pred cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeec
Q 002289 676 EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFG 755 (941)
Q Consensus 676 ~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFG 755 (941)
+.+..++|||||++|+|.+++... ...+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DFG 220 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFG 220 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCT
T ss_pred eCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcchh
Confidence 999999999999999999999763 345899999999999999999999999 9999999999999999999999999
Q ss_pred cccccCCCCCCCccccccccccccCCCcccccccc-----cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHH
Q 002289 756 LSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL-----THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA 830 (941)
Q Consensus 756 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~ 830 (941)
+|+...... ........||+.|+|||++. ...++.++|||||||++|||++|+.||........ ..
T Consensus 221 la~~~~~~~------~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~-~~-- 291 (437)
T 4aw2_A 221 SCLKLMEDG------TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET-YG-- 291 (437)
T ss_dssp TCEECCTTS------CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HH--
T ss_pred hhhhcccCC------CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH-HH--
Confidence 997654321 12233457999999999997 46789999999999999999999999975432111 11
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhc-ccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCC-
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCC-QDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEET- 908 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~-~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~- 908 (941)
+++.... -..|.. .+...+.+.+||++||..+|++
T Consensus 292 --------------------------~i~~~~~~~~~p~~-----------------~~~~s~~~~dLi~~lL~~~~~r~ 328 (437)
T 4aw2_A 292 --------------------------KIMNHKERFQFPTQ-----------------VTDVSENAKDLIRRLICSREHRL 328 (437)
T ss_dssp --------------------------HHHTHHHHCCCCSS-----------------CCCSCHHHHHHHHTTSSCGGGCT
T ss_pred --------------------------hhhhccccccCCcc-----------------cccCCHHHHHHHHHHhccccccc
Confidence 1110000 000110 0112334457888999888888
Q ss_pred -CCCCccCCCCCCCCCCCCC
Q 002289 909 -PPSSSSMLKHPYVSSDVSG 927 (941)
Q Consensus 909 -R~sa~e~L~Hpwf~~~~~~ 927 (941)
|++++|+++||||++..+.
T Consensus 329 ~r~~~~eil~Hpff~~i~w~ 348 (437)
T 4aw2_A 329 GQNGIEDFKKHPFFSGIDWD 348 (437)
T ss_dssp TTTTTHHHHTSGGGTTCCTT
T ss_pred CCCCHHHHhCCCccCCCCHH
Confidence 9999999999999876554
No 31
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-42 Score=380.64 Aligned_cols=199 Identities=24% Similarity=0.417 Sum_probs=176.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||+||+|+.. +|+.||+|+++.... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 357889999999999999999975 699999999875322 2235678899999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 85 ~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~- 158 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPD- 158 (318)
T ss_dssp ECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSS-
T ss_pred EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCC-
Confidence 99999999999997643 4889999999999999999999999 99999999999999999999999999986432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
......||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 159 ---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 207 (318)
T 1fot_A 159 ---------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN 207 (318)
T ss_dssp ---------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred ---------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC
Confidence 1234569999999999999999999999999999999999999997544
No 32
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=386.35 Aligned_cols=258 Identities=22% Similarity=0.354 Sum_probs=198.9
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
..++|++.+.||+|+||+||+|+. .+|+.||||++...... ..+.+.+|++++++++||||+++++++...+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 457899999999999999999996 47999999998764432 3457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||+++++.+||+|||++.......
T Consensus 88 E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD--RLSEEETRVVFRQIVSAVAYVHSQG---YAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp ECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 9999999999997654 4899999999999999999999999 9999999999999999999999999987543221
Q ss_pred CCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||....... .... +..+.
T Consensus 163 ------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~-~~~~---------i~~~~ 226 (347)
T 3zgw_A 163 ------DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMA-LYKK---------IMRGK 226 (347)
T ss_dssp ---------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHH---------HHHTC
T ss_pred ------CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHH---------HHcCC
Confidence 122344579999999999998775 889999999999999999999997543211 1110 00000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
...|.. .++...+||.+||..||++|||++|+++||||..
T Consensus 227 -~~~p~~---------------------------------------~s~~~~~li~~~L~~dP~~Rps~~eil~hp~~~~ 266 (347)
T 3zgw_A 227 -YDVPKW---------------------------------------LSPSSILLLQQMLQVDPKKRISMKNLLNHPWIMQ 266 (347)
T ss_dssp -CCCCTT---------------------------------------CCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHT
T ss_pred -CCCCCC---------------------------------------CCHHHHHHHHHHcccCHhHCcCHHHHhcCcchhc
Confidence 011111 1122235777888888888888888888888866
Q ss_pred CC
Q 002289 924 DV 925 (941)
Q Consensus 924 ~~ 925 (941)
..
T Consensus 267 ~~ 268 (347)
T 3zgw_A 267 DY 268 (347)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 33
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.5e-41 Score=381.88 Aligned_cols=258 Identities=24% Similarity=0.349 Sum_probs=210.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||+||+|+.. +|+.||+|+++..... ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 567999999999999999999975 6899999998764332 235789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC----cEEEeeecc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF----TAKVADFGL 756 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~----~~kl~DFGl 756 (941)
++||||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++ .+||+|||+
T Consensus 91 ~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~ 165 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (361)
T ss_dssp EEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence 9999999999999999654 35899999999999999999999999 99999999999998877 799999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ..
T Consensus 166 a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~-~~-------- 228 (361)
T 2yab_A 166 AHEIEDGV--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET-LA-------- 228 (361)
T ss_dssp CEECCTTC--------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HH--------
T ss_pred ceEcCCCC--------ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH-HH--------
Confidence 98654321 12345699999999999999999999999999999999999999975432111 10
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
.+.. ....++... ++.....+.+||.+||..||++|||++|+|
T Consensus 229 -~i~~-~~~~~~~~~-----------------------------------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l 271 (361)
T 2yab_A 229 -NITA-VSYDFDEEF-----------------------------------FSQTSELAKDFIRKLLVKETRKRLTIQEAL 271 (361)
T ss_dssp -HHHT-TCCCCCHHH-----------------------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred -HHHh-cCCCCCchh-----------------------------------ccCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 0000 011111111 012223345799999999999999999999
Q ss_pred CCCCCCCC
Q 002289 917 KHPYVSSD 924 (941)
Q Consensus 917 ~Hpwf~~~ 924 (941)
+||||+..
T Consensus 272 ~hp~~~~~ 279 (361)
T 2yab_A 272 RHPWITPV 279 (361)
T ss_dssp TSTTTSCS
T ss_pred cCcCcCCC
Confidence 99999854
No 34
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=3.5e-42 Score=376.36 Aligned_cols=275 Identities=24% Similarity=0.401 Sum_probs=209.9
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
++|++.+.||+|+||+||+|... +++.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999975 6899999998754322 24678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|++ |++.+.+... ...+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 155 (292)
T 3o0g_A 82 FCD-QDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPV- 155 (292)
T ss_dssp CCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSCC-
T ss_pred cCC-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCcc-
Confidence 996 4676666543 245899999999999999999999999 9999999999999999999999999998654221
Q ss_pred CCccccccccccccCCCcccccccccCC-CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHK-LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|+|||++.+.. ++.++||||+||++|||++|..||....+..+.......
T Consensus 156 ------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~------------ 217 (292)
T 3o0g_A 156 ------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFR------------ 217 (292)
T ss_dssp ------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHH------------
T ss_pred ------ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHH------------
Confidence 2233456899999999998765 899999999999999999999998765554333322211
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--------HHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRE--------LESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~--------L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
.+-...+...+.+.+.... ........+..++...+||.+||+.||++||||+|+|
T Consensus 218 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 281 (292)
T 3o0g_A 218 ----------------LLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp ----------------HHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred ----------------HhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHh
Confidence 1111111111111100000 0000111222334446899999999999999999999
Q ss_pred CCCCCCC
Q 002289 917 KHPYVSS 923 (941)
Q Consensus 917 ~Hpwf~~ 923 (941)
+||||+.
T Consensus 282 ~hp~f~~ 288 (292)
T 3o0g_A 282 QHPYFSD 288 (292)
T ss_dssp TSGGGTT
T ss_pred cCccccc
Confidence 9999986
No 35
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=6.9e-42 Score=382.74 Aligned_cols=200 Identities=25% Similarity=0.392 Sum_probs=175.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.+.||+|+||.||+|+.. +++.||+|+++.... ...+.+.+|..+++++ +||||+++++++.+.+..++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 357888999999999999999975 689999999975432 2345678999999988 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 88 v~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp EECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 999999999999997653 4899999999999999999999999 99999999999999999999999999985322
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISH 819 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~ 819 (941)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 163 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 212 (345)
T 3a8x_A 163 P-------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 212 (345)
T ss_dssp T-------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred C-------CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence 1 1223456799999999999999999999999999999999999999964
No 36
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.9e-41 Score=374.32 Aligned_cols=272 Identities=22% Similarity=0.322 Sum_probs=216.1
Q ss_pred cccchHHHHHHhcC----------CCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCC
Q 002289 597 RSFTYGEMALATNN----------FNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR 665 (941)
Q Consensus 597 ~~~~~~~~~~~~~~----------y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 665 (941)
+.++++++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34667777766654 677789999999999999976 7999999999876555567889999999999999
Q ss_pred ceeeeeeccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC
Q 002289 666 NLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH 745 (941)
Q Consensus 666 nIv~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~ 745 (941)
||+++++++...+..++||||+++|+|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~ 176 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTL 176 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECC
Confidence 999999999999999999999999999999854 34899999999999999999999999 999999999999999
Q ss_pred CCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHH
Q 002289 746 KFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVR 825 (941)
Q Consensus 746 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~ 825 (941)
++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 177 ~~~~kl~Dfg~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~ 249 (321)
T 2c30_A 177 DGRVKLSDFGFCAQISKDV-------PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQA 249 (321)
T ss_dssp TCCEEECCCTTCEECCSSS-------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred CCcEEEeeeeeeeecccCc-------cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 9999999999998654321 112345699999999999999999999999999999999999999975432111
Q ss_pred HHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCC
Q 002289 826 EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSK 905 (941)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~d 905 (941)
... +.... .|... .. ....+...+++.+||..|
T Consensus 250 -~~~---------~~~~~----------------------~~~~~-~~--------------~~~~~~l~~li~~~l~~d 282 (321)
T 2c30_A 250 -MKR---------LRDSP----------------------PPKLK-NS--------------HKVSPVLRDFLERMLVRD 282 (321)
T ss_dssp -HHH---------HHHSS----------------------CCCCT-TG--------------GGSCHHHHHHHHHHSCSS
T ss_pred -HHH---------HhcCC----------------------CCCcC-cc--------------ccCCHHHHHHHHHHccCC
Confidence 000 00000 00000 00 001122346788899999
Q ss_pred CCCCCCCccCCCCCCCCCCCCCC
Q 002289 906 EETPPSSSSMLKHPYVSSDVSGS 928 (941)
Q Consensus 906 P~~R~sa~e~L~Hpwf~~~~~~~ 928 (941)
|++|||++|+++||||......+
T Consensus 283 p~~Rps~~ell~hp~~~~~~~~~ 305 (321)
T 2c30_A 283 PQERATAQELLDHPFLLQTGLPE 305 (321)
T ss_dssp TTTSCCHHHHHTSGGGGGCCCGG
T ss_pred hhhCcCHHHHhcChhhccCCCcc
Confidence 99999999999999997654433
No 37
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=7.2e-42 Score=382.06 Aligned_cols=259 Identities=22% Similarity=0.347 Sum_probs=207.5
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcE
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~ 680 (941)
...++|++.+.||+|+||+||+|+.+ +|+.||||+++.... ...+.+..|.++++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34678999999999999999999975 689999999875321 2234678899999887 999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++..
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 99999999999999997643 4889999999999999999999999 999999999999999999999999999754
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... +...
T Consensus 169 ~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~------------ 228 (345)
T 1xjd_A 169 MLGD-------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE-ELFH------------ 228 (345)
T ss_dssp CCTT-------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHH------------
T ss_pred ccCC-------CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH-HHHH------------
Confidence 3211 1234567999999999999999999999999999999999999999754321 1000
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCc-cCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSS-SMLKHP 919 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~-e~L~Hp 919 (941)
.+.. ..+. -| ...++.+.+||.+||..||++|+++. |+++||
T Consensus 229 -----------------~i~~---~~~~-~p----------------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp 271 (345)
T 1xjd_A 229 -----------------SIRM---DNPF-YP----------------RWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHP 271 (345)
T ss_dssp -----------------HHHH---CCCC-CC----------------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSG
T ss_pred -----------------HHHh---CCCC-CC----------------cccCHHHHHHHHHHhcCCHhHcCCChHHHHcCc
Confidence 0000 0000 00 01122334788889999999999998 999999
Q ss_pred CCCCCCC
Q 002289 920 YVSSDVS 926 (941)
Q Consensus 920 wf~~~~~ 926 (941)
||++..+
T Consensus 272 ~f~~~~w 278 (345)
T 1xjd_A 272 LFREINW 278 (345)
T ss_dssp GGTTCCH
T ss_pred cccCCCH
Confidence 9987544
No 38
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.6e-42 Score=387.13 Aligned_cols=301 Identities=19% Similarity=0.242 Sum_probs=226.3
Q ss_pred CccccchHHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-----CCcee
Q 002289 595 GVRSFTYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----HRNLV 668 (941)
Q Consensus 595 ~~~~~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~nIv 668 (941)
....+++.+.....++|++.++||+|+||+||+|+.. +++.||||+++.. ....+.+..|+++++.++ ||||+
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv 99 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIV 99 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCee
Confidence 4556777788888899999999999999999999974 6899999999752 334456788999999986 99999
Q ss_pred eeeeccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---
Q 002289 669 SLVGYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH--- 745 (941)
Q Consensus 669 ~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~--- 745 (941)
++++++...+..++||||+ +++|.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||++.
T Consensus 100 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~ 175 (360)
T 3llt_A 100 KYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYF 175 (360)
T ss_dssp CEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTC
T ss_pred cccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccccc
Confidence 9999999999999999999 999999998776667999999999999999999999999 999999999999975
Q ss_pred ----------------------CCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHH
Q 002289 746 ----------------------KFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSL 803 (941)
Q Consensus 746 ----------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSl 803 (941)
++.+||+|||+|+..... .....||+.|+|||++.+..++.++|||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl 245 (360)
T 3llt_A 176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----------HGSIINTRQYRAPEVILNLGWDVSSDMWSF 245 (360)
T ss_dssp CEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----------CCSCCSCGGGCCHHHHTTCCCCTTHHHHHH
T ss_pred cccccchhcccccccccccccCCCCEEEEeccCceecCCC----------CcCccCcccccCcHHHcCCCCCCccchHHH
Confidence 789999999999864321 234568999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHH-------HhcccCCCCCCCHHHH
Q 002289 804 GVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLAL-------KCCQDETDARPSMSEV 876 (941)
Q Consensus 804 G~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~c~~~~p~~RPs~~~v 876 (941)
||++|||++|+.||............ .......+............ ......|.........
T Consensus 246 G~il~ell~g~~pf~~~~~~~~~~~~-----------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 314 (360)
T 3llt_A 246 GCVLAELYTGSLLFRTHEHMEHLAMM-----------ESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSI 314 (360)
T ss_dssp HHHHHHHHHSSCSCCCSSHHHHHHHH-----------HHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHH
T ss_pred HHHHHHHHHCCCCCCCCcHHHHHHHH-----------HHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhh
Confidence 99999999999999765432211111 01112233332221110000 0001112222222221
Q ss_pred HHHHHHhHh-hCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 877 MRELESIWN-MMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 877 ~~~L~~~~~-~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
. .+..... .....++.+.+||.+||+.||++||||+|+|+||||+
T Consensus 315 ~-~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~ 360 (360)
T 3llt_A 315 K-HVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE 360 (360)
T ss_dssp H-HHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred h-hhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence 1 1111000 0011234456899999999999999999999999995
No 39
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.1e-41 Score=388.29 Aligned_cols=308 Identities=19% Similarity=0.216 Sum_probs=213.4
Q ss_pred HhcCCCccceeecc--CcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 607 ATNNFNSSTQIGQG--GYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G--~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
..++|++.+.||+| +||+||+|+.. +|+.||||+++... ....+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 35689999999999 99999999976 69999999987543 223467888999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 9999999999999998765567999999999999999999999999 9999999999999999999999999986543
Q ss_pred CCCCCCccccccccccccCCCccccccccc--CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLT--HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.................||+.|+|||++.+ ..++.++|||||||++|||++|+.||.............. ......
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~--~~~~~~ 257 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLN--GTVPCL 257 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhc--CCCCcc
Confidence 221111111122233468999999999987 6799999999999999999999999975443222111000 000000
Q ss_pred hcCCCCCCChHHHH-H-HHHHH---HHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002289 840 IDGNMGSYPSECVE-K-FIKLA---LKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSS 914 (941)
Q Consensus 840 ~~~~~~~~~~~~~~-~-l~~l~---~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e 914 (941)
.+... .+.+... . ..... ..........||...+.. ........++.+.+||.+||+.||++|||++|
T Consensus 258 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e 330 (389)
T 3gni_B 258 LDTST--IPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSP-----SHPYHRTFSPHFHHFVEQCLQRNPDARPSAST 330 (389)
T ss_dssp -------------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred ccccc--cccccccccccccccccccccccccCccccccCCCC-----CCccccccCHHHHHHHHHHhhcCcccCCCHHH
Confidence 00000 0000000 0 00000 000000001111111100 00111223445678999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 002289 915 MLKHPYVSSDVS 926 (941)
Q Consensus 915 ~L~Hpwf~~~~~ 926 (941)
+|+||||+....
T Consensus 331 ll~hp~f~~~~~ 342 (389)
T 3gni_B 331 LLNHSFFKQIKR 342 (389)
T ss_dssp HTTSGGGGGC--
T ss_pred HhcCHHHHHHhh
Confidence 999999987543
No 40
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=5.9e-42 Score=373.80 Aligned_cols=274 Identities=23% Similarity=0.350 Sum_probs=206.0
Q ss_pred cCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchh--hHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQG--EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
++|++.+.||+|+||+||+|+..+|+.||+|++....... .+.+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5788999999999999999999889999999987543322 35788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
++ ++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 154 (288)
T 1ob3_A 82 LD-QDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPV-- 154 (288)
T ss_dssp CS-EEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred cC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCccc--
Confidence 96 59999986543 45889999999999999999999999 9999999999999999999999999997653221
Q ss_pred CccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||............ .
T Consensus 155 -----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~-~-------------- 214 (288)
T 1ob3_A 155 -----RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRI-F-------------- 214 (288)
T ss_dssp ------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-H--------------
T ss_pred -----cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-H--------------
Confidence 12234468999999999976 45899999999999999999999999765432211111 0
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH--------HHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCC
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMREL--------ESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLK 917 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L--------~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~ 917 (941)
...-...+...|...+....- ..+.......++...+||.+||..||++|||++|+|+
T Consensus 215 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 215 --------------RILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp --------------HHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --------------HHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000001111100000000 0001111223344468999999999999999999999
Q ss_pred CCCCCC
Q 002289 918 HPYVSS 923 (941)
Q Consensus 918 Hpwf~~ 923 (941)
||||++
T Consensus 281 hp~f~~ 286 (288)
T 1ob3_A 281 HAYFKE 286 (288)
T ss_dssp SGGGGC
T ss_pred Ccchhh
Confidence 999976
No 41
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=8.3e-41 Score=377.95 Aligned_cols=263 Identities=25% Similarity=0.472 Sum_probs=218.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC--------CCcEEEEEEeccCCch-hhHhHHHHHHHHHhc-CCCceeeeeeccccC
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 677 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~ 677 (941)
.++|++.+.||+|+||+||+|.+. ++..||||+++..... ..+.+.+|+++++++ +||||+++++++...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 467889999999999999999852 3567999999865333 346789999999999 899999999999999
Q ss_pred CcEEEEEecCCCCCHHHHHhhcC--------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE
Q 002289 678 GEQMLVYEFMSNGTLRDQLSAKS--------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL 743 (941)
Q Consensus 678 ~~~~LV~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl 743 (941)
+..++||||+++|+|.+++.... ...+++..++.++.||++||+|||+++ |+||||||+|||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEE
Confidence 99999999999999999997643 235889999999999999999999999 9999999999999
Q ss_pred cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCch
Q 002289 744 DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKN 822 (941)
Q Consensus 744 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~ 822 (941)
+.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~ 311 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDY-----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV 311 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCT-----TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred CCCCCEEEccccCCcccCcccc-----eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence 9999999999999986543221 112233457889999999999999999999999999999999 9999975432
Q ss_pred hHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 823 IVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
. +.. ..+..+.....+..++..+.+++..||+.+|.+||++.++++.|+.+.....
T Consensus 312 ~-~~~---------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~ 367 (370)
T 2psq_A 312 E-ELF---------KLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 367 (370)
T ss_dssp G-GHH---------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred H-HHH---------HHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 1 111 1122233344566778889999999999999999999999999999876543
No 42
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=386.63 Aligned_cols=212 Identities=28% Similarity=0.315 Sum_probs=182.5
Q ss_pred chHHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccc
Q 002289 600 TYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCD 675 (941)
Q Consensus 600 ~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~ 675 (941)
.+++.....++|++.+.||+|+||+||+|+.+ +|+.||||+++..... ..+.+.+|.+++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 44566667789999999999999999999975 7999999998753221 2345889999999999999999999999
Q ss_pred cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeec
Q 002289 676 EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFG 755 (941)
Q Consensus 676 ~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFG 755 (941)
+.+..++||||+++|+|.+++.+.+ ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DFG 207 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFG 207 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCT
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeech
Confidence 9999999999999999999997643 35899999999999999999999999 9999999999999999999999999
Q ss_pred cccccCCCCCCCccccccccccccCCCcccccccc-------cCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 756 LSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL-------THKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 756 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
+++...... ........||+.|+|||++. +..++.++|||||||++|||++|+.||....
T Consensus 208 la~~~~~~~------~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 274 (412)
T 2vd5_A 208 SCLKLRADG------TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS 274 (412)
T ss_dssp TCEECCTTS------CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred hheeccCCC------ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC
Confidence 998654321 11223457999999999997 3568999999999999999999999997544
No 43
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=370.60 Aligned_cols=264 Identities=28% Similarity=0.432 Sum_probs=216.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.+.||+|+||+||+|.+. .+..||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 467888999999999999999974 355699999986433 335679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.++++... ..+++..++.++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+++....
T Consensus 128 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred EeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 999999999999996543 45899999999999999999999999 99999999999999999999999999987643
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||........ . ..+..
T Consensus 204 ~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~---------~~~~~ 269 (325)
T 3kul_A 204 DPDA----AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV-I---------SSVEE 269 (325)
T ss_dssp ---C----CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH-H---------HHHHT
T ss_pred Cccc----eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH-H---------HHHHc
Confidence 2211 112233446788999999999999999999999999999999 9999976543211 1 11122
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
+.....+..++..+.+++..||..+|++||++.++++.|+.+......
T Consensus 270 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 270 GYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 233345667778899999999999999999999999999998775543
No 44
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.6e-41 Score=383.94 Aligned_cols=305 Identities=25% Similarity=0.343 Sum_probs=207.7
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccC--CchhhHhHHHHHHHHHhcC-CCceeeeeeccccC--CcE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEE--GEQ 680 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~--~~~ 680 (941)
..++|++.+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|+.+++++. ||||+++++++... ...
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999964 6899999998643 2333567889999999997 99999999998644 378
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++|||||+ |+|.+++... .+++..+..++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||+|+..
T Consensus 87 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 99999996 6999999753 4889999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCC--------------ccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHH
Q 002289 761 PVPDIEG--------------IVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVR 825 (941)
Q Consensus 761 ~~~~~~~--------------~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~ 825 (941)
....... ...........||+.|+|||++.+ ..++.++||||+||++|||++|+.||........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~ 239 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ 239 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 4311100 001122344679999999999987 6789999999999999999999999976554322
Q ss_pred HHHHHHhhcc--chhhhcCCCCCCChHHHHHHHHHHHHhcc-cCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccC
Q 002289 826 EVNIAYQSSM--MFSVIDGNMGSYPSECVEKFIKLALKCCQ-DETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEH 902 (941)
Q Consensus 826 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~c~~-~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L 902 (941)
......... ..+.+......+. ..+.+-...... .....+..+......+... .......+.+.+||.+||
T Consensus 240 -~~~i~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dll~~~L 313 (388)
T 3oz6_A 240 -LERIIGVIDFPSNEDVESIQSPFA----KTMIESLKEKVEIRQSNKRDIFTKWKNLLLKI-NPKADCNEEALDLLDKLL 313 (388)
T ss_dssp -HHHHHHHHCCCCHHHHHTSCCSSH----HHHHHHHHHHCC-----CCCCHHHHHHHHHHH-CTTCCCCHHHHHHHHHHC
T ss_pred -HHHHHHhcCCCCHHHHHhccCHHH----HHHHHhCcccccccCCCHHHhCcchhhhcccc-cccccCCHHHHHHHHHhh
Confidence 221111000 0000000000111 111111111111 1112223333333332222 122244566789999999
Q ss_pred CCCCCCCCCCccCCCCCCCCCC
Q 002289 903 TSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 903 ~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
++||++|+||+|+|+||||+.-
T Consensus 314 ~~dP~~R~t~~e~l~Hp~~~~~ 335 (388)
T 3oz6_A 314 QFNPNKRISANDALKHPFVSIF 335 (388)
T ss_dssp CSSGGGSCCHHHHTTSTTTTTT
T ss_pred ccCcccCCCHHHHhCCHHHHHh
Confidence 9999999999999999998753
No 45
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=3.2e-41 Score=377.92 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=176.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|+.. +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 357889999999999999999975 689999999865322 2235688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp EECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccCC
Confidence 99999999999997654 4889999999999999999999999 999999999999999999999999999865321
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 195 ----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 242 (350)
T 1rdq_E 195 ----------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ 242 (350)
T ss_dssp ----------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ----------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC
Confidence 234568999999999999999999999999999999999999997543
No 46
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-41 Score=374.93 Aligned_cols=259 Identities=19% Similarity=0.348 Sum_probs=208.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|++.+.||+|+||+||+|... +++.||+|++.... .....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999975 68999999987543 3455788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC--CCcEEEeeeccccccCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH--KFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~--~~~~kl~DFGla~~~~~~~ 764 (941)
+++|+|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+|||++. ++.+||+|||+++.....
T Consensus 83 ~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~- 157 (321)
T 1tki_A 83 ISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157 (321)
T ss_dssp CCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-
T ss_pred CCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC-
Confidence 9999999999653 345899999999999999999999999 999999999999987 789999999999876432
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ... .+....
T Consensus 158 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~---------~i~~~~- 219 (321)
T 1tki_A 158 -------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIE---------NIMNAE- 219 (321)
T ss_dssp -------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHH---------HHHHTC-
T ss_pred -------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHH---------HHHcCC-
Confidence 12334568999999999999889999999999999999999999997544311 111 001000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
..++... ++.....+.+|+.+||..||++|||++|+|+||||...
T Consensus 220 ~~~~~~~-----------------------------------~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~ 264 (321)
T 1tki_A 220 YTFDEEA-----------------------------------FKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK 264 (321)
T ss_dssp CCCCHHH-----------------------------------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred CCCChhh-----------------------------------hccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccC
Confidence 0111100 01222334578889999999999999999999999765
Q ss_pred C
Q 002289 925 V 925 (941)
Q Consensus 925 ~ 925 (941)
.
T Consensus 265 ~ 265 (321)
T 1tki_A 265 I 265 (321)
T ss_dssp G
T ss_pred c
Confidence 3
No 47
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=1.3e-41 Score=378.14 Aligned_cols=202 Identities=26% Similarity=0.407 Sum_probs=168.7
Q ss_pred hcCCCccceeeccCcEEEEEEEe----CCCcEEEEEEeccCCc----hhhHhHHHHHHHHHhcCCCceeeeeeccccCCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 679 (941)
.++|++.+.||+|+||.||+|+. .+|+.||+|+++.... .....+.+|++++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46789999999999999999996 4789999999976432 223567889999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 999999999999999997653 4888999999999999999999999 99999999999999999999999999875
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.... ........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 171 ~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 225 (327)
T 3a62_A 171 SIHD-------GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN 225 (327)
T ss_dssp ---------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cccC-------CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC
Confidence 4221 112234568999999999999999999999999999999999999997543
No 48
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1.7e-41 Score=375.63 Aligned_cols=290 Identities=22% Similarity=0.394 Sum_probs=199.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||+||+|... +|+.||+|+++..... ..+.+.+|++++++++||||+++++++..++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468999999999999999999965 6899999998754332 24678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcC----CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 686 FMSNGTLRDQLSAKS----KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
|++ |+|.+++.... ...+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 997 69999886532 245899999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ ...... ..
T Consensus 160 ~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~------~~ 225 (317)
T 2pmi_A 160 IPV-------NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ-LKLIFD------IM 225 (317)
T ss_dssp SCC-------CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHH------HH
T ss_pred CCc-------ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHH------Hh
Confidence 221 12234468999999999986 4689999999999999999999999976543221 111110 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCC--CCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDAR--PSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKH 918 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~R--Ps~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~H 918 (941)
... +...+..+.++. -+..+...+ ....+. +.. ......+..+.+||.+||+.||++|||++|+|+|
T Consensus 226 ~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 226 GTP----NESLWPSVTKLP--KYNPNIQQRPPRDLRQV---LQP--HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp CSC----CTTTCGGGGGCT--TCCTTCCCCCCCCSHHH---HGG--GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred CCC----ChhHhhhhhhhh--hcccccccccchhHHHh---hcc--cccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 000 000000000000 000000011 111111 110 0111233456789999999999999999999999
Q ss_pred CCCCCCCC
Q 002289 919 PYVSSDVS 926 (941)
Q Consensus 919 pwf~~~~~ 926 (941)
|||+....
T Consensus 295 p~f~~~~~ 302 (317)
T 2pmi_A 295 PWFAEYYH 302 (317)
T ss_dssp GGGGGGCC
T ss_pred hhhhcccc
Confidence 99976443
No 49
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=367.54 Aligned_cols=281 Identities=25% Similarity=0.351 Sum_probs=207.2
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCc-----hhhHhHHHHHHHHHhcC---CCceeeeeeccccC
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-----QGEKEFLTEIQFLSRLH---HRNLVSLVGYCDEE 677 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~ 677 (941)
..++|++.+.||+|+||+||+|++ .+++.||||++..... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467999999999999999999996 4789999999864221 11346778888777765 99999999998765
Q ss_pred C-----cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEe
Q 002289 678 G-----EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVA 752 (941)
Q Consensus 678 ~-----~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~ 752 (941)
. ..++||||++ |+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEe
Confidence 4 5799999996 69999998776666999999999999999999999999 9999999999999999999999
Q ss_pred eeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 753 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 753 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........... ...
T Consensus 163 Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~-i~~ 233 (308)
T 3g33_A 163 DFGLARIYSYQ--------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGK-IFD 233 (308)
T ss_dssp SCSCTTTSTTC--------CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHH-HHH
T ss_pred eCccccccCCC--------cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHH
Confidence 99999865322 122445689999999999999999999999999999999999999976544222111 110
Q ss_pred hccchhhhcCCCC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCC
Q 002289 833 SSMMFSVIDGNMG---SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETP 909 (941)
Q Consensus 833 ~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R 909 (941)
.... ....... ..+. . ...+....... ...+...+...+||.+||+.||++|
T Consensus 234 ~~~~--~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~----------~~~~~~~~~~~~li~~~L~~dP~~R 288 (308)
T 3g33_A 234 LIGL--PPEDDWPRDVSLPR-----------G--AFPPRGPRPVQ----------SVVPEMEESGAQLLLEMLTFNPHKR 288 (308)
T ss_dssp HHCC--CCTTTSCSSCSSCG-----------G--GSCCCCCCCHH----------HHSCSCCHHHHHHHHHHTCSSTTTS
T ss_pred HhCC--CChhhccchhhccc-----------c--ccCCCCCCcHH----------HhCccccHHHHHHHHHHhcCCCccC
Confidence 0000 0000000 0000 0 00011111111 1223444556789999999999999
Q ss_pred CCCccCCCCCCCCCCC
Q 002289 910 PSSSSMLKHPYVSSDV 925 (941)
Q Consensus 910 ~sa~e~L~Hpwf~~~~ 925 (941)
|||+|+|+||||+...
T Consensus 289 ~t~~e~l~h~~~~~~~ 304 (308)
T 3g33_A 289 ISAFRALQHSYLHKDE 304 (308)
T ss_dssp CCHHHHHTSTTC----
T ss_pred CCHHHHhcCccccCCC
Confidence 9999999999998753
No 50
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=382.17 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=175.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367889999999999999999965 689999999864321 2235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.....
T Consensus 94 ~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp ECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 9999999999999754 35899999999999999999999999 999999999999999999999999999865422
Q ss_pred CCCCccccccccccccCCCccccccccc---CCCCchhHhHHHHHHHHHHHhCCCCCCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLT---HKLTDKSDVYSLGVVFLELLTGMQPISH 819 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDVwSlG~ll~elltG~~Pf~~ 819 (941)
.......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..
T Consensus 169 --------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~ 219 (384)
T 4fr4_A 169 --------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHI 219 (384)
T ss_dssp --------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred --------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCC
Confidence 22345679999999999974 4589999999999999999999999964
No 51
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-40 Score=377.06 Aligned_cols=260 Identities=22% Similarity=0.400 Sum_probs=210.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|++.+.||+|+||+||+|... +|+.||+|++..........+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999975 6899999999876555566889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC--CCcEEEeeeccccccCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH--KFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~--~~~~kl~DFGla~~~~~~~ 764 (941)
+++|+|.+++... ...+++..++.++.||+.||+|||+++ |+||||||+|||++. ++.+||+|||+++......
T Consensus 130 ~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 205 (387)
T 1kob_A 130 LSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE 205 (387)
T ss_dssp CCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred CCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence 9999999998653 345899999999999999999999999 999999999999974 5789999999998654321
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ..
T Consensus 206 --------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~-~~---------------- 260 (387)
T 1kob_A 206 --------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET-LQ---------------- 260 (387)
T ss_dssp --------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HH----------------
T ss_pred --------ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHH-HH----------------
Confidence 12334689999999999999999999999999999999999999975443111 00
Q ss_pred CCCChHHHHHHHHHHHHh-cccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKC-CQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c-~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
. +..+ +...+.. .....+.+.+||.+||..||++|||++|+|+||||.+
T Consensus 261 ------------~-i~~~~~~~~~~~-----------------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~ 310 (387)
T 1kob_A 261 ------------N-VKRCDWEFDEDA-----------------FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKG 310 (387)
T ss_dssp ------------H-HHHCCCCCCSST-----------------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSS
T ss_pred ------------H-HHhCCCCCCccc-----------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccC
Confidence 0 1111 1111110 0112233457888999999999999999999999987
Q ss_pred CCC
Q 002289 924 DVS 926 (941)
Q Consensus 924 ~~~ 926 (941)
...
T Consensus 311 ~~~ 313 (387)
T 1kob_A 311 DHS 313 (387)
T ss_dssp CCT
T ss_pred Ccc
Confidence 543
No 52
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.4e-40 Score=366.68 Aligned_cols=267 Identities=32% Similarity=0.501 Sum_probs=211.7
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCc
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 679 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 679 (941)
.++....++|++.+.||+|+||+||+|++ +|+.||||++...... ..+.+.+|++++++++||||+++++++...+.
T Consensus 30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 108 (309)
T 3p86_A 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN 108 (309)
T ss_dssp --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence 34445567899999999999999999987 6889999998765432 34578999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCC-CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSK-EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
.++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+++ ++|+||||||+||+++.++.+||+|||+++
T Consensus 109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 187 (309)
T 3p86_A 109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187 (309)
T ss_dssp CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence 9999999999999999975432 24889999999999999999999875 459999999999999999999999999997
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.............
T Consensus 188 ~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~-------- 252 (309)
T 3p86_A 188 LKASTF-------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVG-------- 252 (309)
T ss_dssp ---------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHH--------
T ss_pred cccccc-------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH--------
Confidence 543211 12234568999999999999999999999999999999999999997654322111110
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
........+..++..+.+++..||+.+|.+||++.++++.|+.+.+.
T Consensus 253 -~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 253 -FKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp -HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred -hcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 11223345666778899999999999999999999999999988653
No 53
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.2e-41 Score=371.51 Aligned_cols=259 Identities=22% Similarity=0.350 Sum_probs=208.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||.||+|... +|+.||+|+++..... ..+.+.+|++++++++||||+++++++...+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 467899999999999999999975 6899999998754322 246789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC----cEEEeeecc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF----TAKVADFGL 756 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~----~~kl~DFGl 756 (941)
++||||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++ .+||+|||+
T Consensus 90 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 164 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGL 164 (326)
T ss_dssp EEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence 9999999999999999654 45899999999999999999999999 99999999999999887 899999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ....
T Consensus 165 a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~------ 229 (326)
T 2y0a_A 165 AHKIDFGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET-LANV------ 229 (326)
T ss_dssp CEECCTTS--------CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HHHH------
T ss_pred CeECCCCC--------ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHH------
Confidence 98654221 12345689999999999999999999999999999999999999975432111 0000
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
... ...++... .+.....+.+||.+||..||++|||++|+|
T Consensus 230 ---~~~-~~~~~~~~-----------------------------------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 270 (326)
T 2y0a_A 230 ---SAV-NYEFEDEY-----------------------------------FSNTSALAKDFIRRLLVKDPKKRMTIQDSL 270 (326)
T ss_dssp ---HHT-CCCCCHHH-----------------------------------HTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred ---Hhc-CCCcCccc-----------------------------------cccCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 000 00111100 011223345788899999999999999999
Q ss_pred CCCCCCCCC
Q 002289 917 KHPYVSSDV 925 (941)
Q Consensus 917 ~Hpwf~~~~ 925 (941)
+||||....
T Consensus 271 ~hp~~~~~~ 279 (326)
T 2y0a_A 271 QHPWIKPKD 279 (326)
T ss_dssp HSTTTSCCS
T ss_pred cCCCccCCc
Confidence 999998654
No 54
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=2.3e-41 Score=398.12 Aligned_cols=263 Identities=24% Similarity=0.354 Sum_probs=210.3
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
..++|++.+.||+|+||.||+|+.. +|+.||+|++..... .....+.+|+++++.++||||+++++++.+.+..++
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 3567999999999999999999975 799999999865322 224568899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||++||+|.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+....
T Consensus 262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 999999999999998766666999999999999999999999999 99999999999999999999999999986542
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 339 ~--------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~----------------- 393 (576)
T 2acx_A 339 G--------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK----------------- 393 (576)
T ss_dssp T--------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCC-----------------
T ss_pred C--------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchh-----------------
Confidence 2 112345799999999999999999999999999999999999999975321000
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCC-----CCccCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPP-----SSSSMLK 917 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----sa~e~L~ 917 (941)
...+.+.+... +..-| ....+.+.+||.+||+.||++|+ +++|+++
T Consensus 394 ---------~~~i~~~i~~~----~~~~p----------------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 394 ---------REEVERLVKEV----PEEYS----------------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp ---------HHHHHHHHHHC----CCCCC----------------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred ---------HHHHHHHhhcc----cccCC----------------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 00111111110 00000 11123345677888888888888 7789999
Q ss_pred CCCCCCCCC
Q 002289 918 HPYVSSDVS 926 (941)
Q Consensus 918 Hpwf~~~~~ 926 (941)
||||++..+
T Consensus 445 HpfF~~i~w 453 (576)
T 2acx_A 445 HPLFKKLNF 453 (576)
T ss_dssp SGGGTTCCH
T ss_pred ChhhccCCH
Confidence 999987544
No 55
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.6e-41 Score=391.80 Aligned_cols=284 Identities=21% Similarity=0.315 Sum_probs=206.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccC--CchhhHhHHHHHHHHHhcCCCceeeeeeccccC------C
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~------~ 678 (941)
.++|++.+.||+|+||+||+|... +++.||||++... .....+.+.+|+++++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 578999999999999999999965 6899999998753 223356788999999999999999999998554 4
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||+++ +|.+.+.. .+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+|+
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred eEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 57999999964 67777643 3889999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||........+.... .
T Consensus 213 ~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~-~------ 277 (464)
T 3ttj_A 213 TAGTS--------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVI-E------ 277 (464)
T ss_dssp ----C--------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH-H------
T ss_pred ecCCC--------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-H------
Confidence 65321 22344679999999999999999999999999999999999999997655433222211 1
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCC-CCCHHHHHHHHHHhHhhCCCC-------CCCCcccccccCCCCCCCCC
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDA-RPSMSEVMRELESIWNMMPES-------DTKTPEFINSEHTSKEETPP 910 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~-RPs~~~v~~~L~~~~~~~~~~-------~~~~~dll~~~L~~dP~~R~ 910 (941)
. .+..+.+....+...........|.. +..+..... . ..++.. .+++.+||.+||++||++|+
T Consensus 278 ~----lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ 348 (464)
T 3ttj_A 278 Q----LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP---D--SLFPADSEHNKLKASQARDLLSKMLVIDPAKRI 348 (464)
T ss_dssp H----HCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSC---G--GGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSC
T ss_pred h----cCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCc---c--cccccccccccccCHHHHHHHHHHcCCChhhCC
Confidence 0 11122222222222222222222221 111111100 0 000000 12356899999999999999
Q ss_pred CCccCCCCCCCCC
Q 002289 911 SSSSMLKHPYVSS 923 (941)
Q Consensus 911 sa~e~L~Hpwf~~ 923 (941)
||+|+|+||||+.
T Consensus 349 ta~e~L~Hp~~~~ 361 (464)
T 3ttj_A 349 SVDDALQHPYINV 361 (464)
T ss_dssp CHHHHHTSTTTGG
T ss_pred CHHHHhcChhhhh
Confidence 9999999999974
No 56
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.1e-41 Score=374.30 Aligned_cols=261 Identities=22% Similarity=0.320 Sum_probs=203.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999976 789999999875433 234678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 86 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 86 YCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp CCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred cCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 99999999998543 35899999999999999999999999 99999999999999999999999999986532211
Q ss_pred CCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
........||+.|+|||++.+..+ +.++|||||||++|||++|+.||............... ...
T Consensus 161 -----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~---------~~~ 226 (323)
T 3tki_A 161 -----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---------KKT 226 (323)
T ss_dssp -----ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHT---------TCT
T ss_pred -----ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhc---------ccc
Confidence 122334679999999999988775 77899999999999999999999754332111111000 000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
.. +.. ...+....+||.+||..||++|||++|+++||||...
T Consensus 227 -------------------~~-----~~~--------------~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~ 268 (323)
T 3tki_A 227 -------------------YL-----NPW--------------KKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP 268 (323)
T ss_dssp -------------------TS-----TTG--------------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred -------------------cC-----Ccc--------------ccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence 00 000 0111222467788888888999999999999998754
Q ss_pred C
Q 002289 925 V 925 (941)
Q Consensus 925 ~ 925 (941)
.
T Consensus 269 ~ 269 (323)
T 3tki_A 269 L 269 (323)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=6.5e-41 Score=375.54 Aligned_cols=203 Identities=22% Similarity=0.355 Sum_probs=176.8
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 681 (941)
..++|++.+.||+|+||+||+|+.. +|+.||||+++.... ...+.+..|.++++.+ +||||+++++++.+.+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3568999999999999999999976 488999999875322 2235678899999988 8999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 98 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 9999999999999997654 4899999999999999999999999 9999999999999999999999999998532
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.. ........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 173 ~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~ 225 (353)
T 2i0e_A 173 WD-------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED 225 (353)
T ss_dssp CT-------TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cC-------CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC
Confidence 21 122345679999999999999999999999999999999999999997543
No 58
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=3.4e-39 Score=355.14 Aligned_cols=280 Identities=35% Similarity=0.617 Sum_probs=231.2
Q ss_pred CccccchHHHHHHhcCCCcc------ceeeccCcEEEEEEEeCCCcEEEEEEeccCC----chhhHhHHHHHHHHHhcCC
Q 002289 595 GVRSFTYGEMALATNNFNSS------TQIGQGGYGKVYKGILPDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHH 664 (941)
Q Consensus 595 ~~~~~~~~~~~~~~~~y~~~------~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h 664 (941)
....|++.++..++++|... +.||+|+||+||+|.. +++.||||++.... ....+.+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 35678999999999999887 8999999999999997 67899999986532 2234678999999999999
Q ss_pred CceeeeeeccccCCcEEEEEecCCCCCHHHHHhhc-CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE
Q 002289 665 RNLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSAK-SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL 743 (941)
Q Consensus 665 ~nIv~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl 743 (941)
|||+++++++...+..++||||+++|+|.+++... ....+++..++.++.|++.||+|||+++ |+||||||+||++
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nili 166 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILL 166 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEE
Confidence 99999999999999999999999999999999743 3346899999999999999999999999 9999999999999
Q ss_pred cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch-
Q 002289 744 DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN- 822 (941)
Q Consensus 744 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~- 822 (941)
+.++.+||+|||+++....... ........||+.|+|||.+.+ .++.++||||||+++|||++|+.||.....
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~ 240 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQ-----TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP 240 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSS-----CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS
T ss_pred cCCCcEEEeecccccccccccc-----cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch
Confidence 9999999999999986543211 112234568999999998865 578999999999999999999999975432
Q ss_pred --hHHHHHHHH-hhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 823 --IVREVNIAY-QSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 823 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
......... ....+...++......+..++..+.+++..||+.+|.+||++.++++.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 241 QLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp SBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 111111111 12223444555666678889999999999999999999999999999999864
No 59
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.6e-40 Score=356.90 Aligned_cols=258 Identities=29% Similarity=0.488 Sum_probs=216.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
..++|++.+.||+|+||+||+|.+.+++.||+|++..... ..+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (269)
T 4hcu_A 8 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF 86 (269)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred ChhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence 3567889999999999999999998889999999986443 346799999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 87 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 160 (269)
T 4hcu_A 87 MEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-- 160 (269)
T ss_dssp CTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH--
T ss_pred CCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEeccccccccccccc--
Confidence 99999999996543 45899999999999999999999999 9999999999999999999999999998653211
Q ss_pred CccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||....... ... .+..+...
T Consensus 161 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~-~~~---------~~~~~~~~ 226 (269)
T 4hcu_A 161 ----YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE-VVE---------DISTGFRL 226 (269)
T ss_dssp ----HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHH---------HHHTTCCC
T ss_pred ----cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH-HHH---------HHhcCccC
Confidence 112233456778999999999999999999999999999999 999997654321 111 11222223
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+...+..+.+++..|++.+|++||++.+++++|+++.+
T Consensus 227 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 227 YKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999999998764
No 60
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=365.27 Aligned_cols=269 Identities=23% Similarity=0.427 Sum_probs=215.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|.+.+.||+|+||+||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 467888999999999999999975 6899999998776666677899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++|+|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++........
T Consensus 89 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 89 IKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp CTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 99999999997643 45899999999999999999999999 999999999999999999999999999876433211
Q ss_pred Cc-------cccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 767 GI-------VPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 767 ~~-------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.. ..........||+.|+|||++.+..++.++|||||||++|||++|..|+.......... .......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~-----~~~~~~~ 239 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF-----GLNVRGF 239 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS-----SBCHHHH
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH-----hhhhhcc
Confidence 00 00111124579999999999999999999999999999999999999986422100000 0000000
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
.. ...+..++..+.+++.+||+.+|++||++.++++.|+.+.....
T Consensus 240 ~~---~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 240 LD---RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp HH---HTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred cc---ccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 00 01234455678899999999999999999999999998876543
No 61
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=9.7e-41 Score=376.13 Aligned_cols=257 Identities=24% Similarity=0.379 Sum_probs=206.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 568999999999999999999975 689999999976433 23457889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC---CcEEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK---FTAKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~---~~~kl~DFGla~~~~ 761 (941)
||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.+ +.+||+|||++....
T Consensus 108 e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 108 DLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp CCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred ecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 999999999999654 35899999999999999999999999 9999999999999865 459999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ..
T Consensus 183 ~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-~~------------- 240 (362)
T 2bdw_A 183 DSE--------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRL-YA------------- 240 (362)
T ss_dssp TCC--------SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HH-------------
T ss_pred CCc--------ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHH-HH-------------
Confidence 221 12345699999999999999999999999999999999999999975432110 00
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
.+.......|. +.. ....+.+.+||.+||..||++|||++|+|+||||
T Consensus 241 ----------------~i~~~~~~~~~--~~~--------------~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~ 288 (362)
T 2bdw_A 241 ----------------QIKAGAYDYPS--PEW--------------DTVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 288 (362)
T ss_dssp ----------------HHHHTCCCCCT--TGG--------------GGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHH
T ss_pred ----------------HHHhCCCCCCc--ccc--------------cCCCHHHHHHHHHHcCCChhhCcCHHHHhcCccc
Confidence 00000000000 000 0112233478889999999999999999999999
Q ss_pred CC
Q 002289 922 SS 923 (941)
Q Consensus 922 ~~ 923 (941)
..
T Consensus 289 ~~ 290 (362)
T 2bdw_A 289 CN 290 (362)
T ss_dssp HT
T ss_pred CC
Confidence 65
No 62
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=383.01 Aligned_cols=259 Identities=23% Similarity=0.341 Sum_probs=207.0
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||+||+|... +|+.||+|++...... ..+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4578999999999999999999964 7899999998765433 345789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc---CCCcEEEeeecccccc
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD---HKFTAKVADFGLSRLA 760 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~---~~~~~kl~DFGla~~~ 760 (941)
|||+++|+|.+.+.... .+++..+..++.||+.||+|||+++ |+||||||+|||++ .++.+||+|||+|+..
T Consensus 89 ~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~ 163 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEV 163 (444)
T ss_dssp ECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred EEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence 99999999999997653 4899999999999999999999999 99999999999998 4678999999999765
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... .......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ..
T Consensus 164 ~~~~-------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~-~~------------ 223 (444)
T 3soa_A 164 EGEQ-------QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRL-YQ------------ 223 (444)
T ss_dssp CTTC-------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HH------------
T ss_pred cCCC-------ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHH-HH------------
Confidence 4321 122345799999999999999999999999999999999999999965432111 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPY 920 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpw 920 (941)
.+........+... +...+.+.+||.+||..||++|||++|+|+|||
T Consensus 224 ----------------~i~~~~~~~~~~~~-----------------~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~ 270 (444)
T 3soa_A 224 ----------------QIKAGAYDFPSPEW-----------------DTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270 (444)
T ss_dssp ----------------HHHHTCCCCCTTTT-----------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCT
T ss_pred ----------------HHHhCCCCCCcccc-----------------ccCCHHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence 00000000000000 112233457889999999999999999999999
Q ss_pred CCC
Q 002289 921 VSS 923 (941)
Q Consensus 921 f~~ 923 (941)
|+.
T Consensus 271 ~~~ 273 (444)
T 3soa_A 271 ISH 273 (444)
T ss_dssp THH
T ss_pred ccC
Confidence 964
No 63
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.1e-41 Score=377.11 Aligned_cols=259 Identities=21% Similarity=0.315 Sum_probs=203.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC-----chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-----LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
.++|++.+.||+|+||+||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999975 68999999986321 113467899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhc--CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc---EEEeeecc
Q 002289 682 LVYEFMSNGTLRDQLSAK--SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT---AKVADFGL 756 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~---~kl~DFGl 756 (941)
+||||+++|+|.+.+... ....+++..++.++.||++||+|||+++ |+||||||+|||++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999999887643 3345899999999999999999999999 999999999999987654 99999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... +...
T Consensus 180 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~-------- 242 (351)
T 3c0i_A 180 AIQLGESG-------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFE-------- 242 (351)
T ss_dssp CEECCTTS-------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHH--------
T ss_pred eeEecCCC-------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHH--------
Confidence 98664321 122345699999999999999999999999999999999999999975321 0000
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
.+..+.. ..+... .+.....+.+||.+||..||++|||+.|+|
T Consensus 243 -~i~~~~~-~~~~~~-----------------------------------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l 285 (351)
T 3c0i_A 243 -GIIKGKY-KMNPRQ-----------------------------------WSHISESAKDLVRRMLMLDPAERITVYEAL 285 (351)
T ss_dssp -HHHHTCC-CCCHHH-----------------------------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred -HHHcCCC-CCCccc-----------------------------------cccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 0111110 011000 011122334678888888888888888888
Q ss_pred CCCCCCC
Q 002289 917 KHPYVSS 923 (941)
Q Consensus 917 ~Hpwf~~ 923 (941)
+||||+.
T Consensus 286 ~hp~~~~ 292 (351)
T 3c0i_A 286 NHPWLKE 292 (351)
T ss_dssp TSHHHHT
T ss_pred cChhhcC
Confidence 8888865
No 64
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.7e-40 Score=358.11 Aligned_cols=258 Identities=27% Similarity=0.445 Sum_probs=216.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
..++|++.+.||+|+||+||+|.++++..||+|+++.... ..+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY 84 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence 4578999999999999999999998888999999986443 346789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||++.......
T Consensus 85 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 158 (268)
T 3sxs_A 85 ISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-- 158 (268)
T ss_dssp CTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTC--
T ss_pred cCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhh--
Confidence 99999999997643 35899999999999999999999999 9999999999999999999999999998654322
Q ss_pred CccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.......... .+..+...
T Consensus 159 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~----------~~~~~~~~ 224 (268)
T 3sxs_A 159 ----YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVL----------KVSQGHRL 224 (268)
T ss_dssp ----EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH----------HHHTTCCC
T ss_pred ----hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHH----------HHHcCCCC
Confidence 112233456778999999999899999999999999999999 999997554322111 11122223
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+..++..+.+++..|++.+|.+||++.++++.|+.+.+
T Consensus 225 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 225 YRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp CCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred CCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 3444556789999999999999999999999999987743
No 65
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.9e-40 Score=363.05 Aligned_cols=271 Identities=25% Similarity=0.420 Sum_probs=214.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-----CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecccc--CCc
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGE 679 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~--~~~ 679 (941)
..++|++.+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ...
T Consensus 8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 87 (295)
T 3ugc_A 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN 87 (295)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence 357889999999999999999984 3689999999987666666789999999999999999999999854 456
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++|+|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.
T Consensus 88 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~ 163 (295)
T 3ugc_A 88 LKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKV 163 (295)
T ss_dssp CEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred eEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCccccc
Confidence 899999999999999997643 35899999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh-------
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ------- 832 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~------- 832 (941)
....... ........++..|+|||++.+..++.++||||||+++|||++|..|+....... ......
T Consensus 164 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~--~~~~~~~~~~~~~ 237 (295)
T 3ugc_A 164 LPQDKEF----FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF--MRMIGNDKQGQMI 237 (295)
T ss_dssp ----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHH--HHHHCTTCCTHHH
T ss_pred ccCCcce----eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHH--HhhhcCccccchh
Confidence 6432210 112233457778999999999999999999999999999999999986432110 000000
Q ss_pred -hccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 833 -SSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 833 -~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
......+........+..++..+.+++..||+.+|++||++.++++.|+++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 238 VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 0011122233344566778889999999999999999999999999999987654
No 66
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=371.44 Aligned_cols=285 Identities=22% Similarity=0.386 Sum_probs=206.4
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchh-hHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
++|++.+.||+|+||+||+|+.. +++.||||++....... ...+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999975 78999999987543222 23566899999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
++ |+|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-- 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPT-- 154 (324)
T ss_dssp CS-EEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred cc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCc--
Confidence 96 69999987643 45899999999999999999999999 9999999999999999999999999997543221
Q ss_pred CccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ..... ........
T Consensus 155 -----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~i~------~~~~~~~~ 222 (324)
T 3mtl_A 155 -----KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ-LHFIF------RILGTPTE 222 (324)
T ss_dssp -------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHH------HHHCCCCT
T ss_pred -----cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHH------HHhCCCCh
Confidence 12234468999999999887 5689999999999999999999999976543221 11110 00000000
Q ss_pred -CCChHHH-HHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 846 -SYPSECV-EKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 846 -~~~~~~~-~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..+.... ..+.. ...|..+.. ......+..++...+||.+||.+||++|||++|+|+||||.+
T Consensus 223 ~~~~~~~~~~~~~~------~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~ 287 (324)
T 3mtl_A 223 ETWPGILSNEEFKT------YNYPKYRAE---------ALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS 287 (324)
T ss_dssp TTSTTGGGCHHHHH------TCCCCCCCC---------CHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGG
T ss_pred Hhchhhhcchhhcc------cccccccch---------hhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhh
Confidence 0000000 00000 001111110 011122344555678999999999999999999999999987
Q ss_pred CCCC
Q 002289 924 DVSG 927 (941)
Q Consensus 924 ~~~~ 927 (941)
....
T Consensus 288 ~~~~ 291 (324)
T 3mtl_A 288 LGER 291 (324)
T ss_dssp GCST
T ss_pred cccc
Confidence 6544
No 67
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.2e-41 Score=390.45 Aligned_cols=257 Identities=22% Similarity=0.293 Sum_probs=198.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccC---CchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|... +|+.||||+++.. .......+.+|+++++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999964 6899999998753 222335678899999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhc-CCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHT-EADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
|||+++|+|.+++.... .+++..++.++.||++||+|||+ .+ |+||||||+|||++.++.+||+|||+|+....
T Consensus 227 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp ECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred EeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 99999999999997654 48999999999999999999998 88 99999999999999999999999999975432
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
. ........||+.|+|||++.+..++.++|||||||++|||++|+.||........ .... ...
T Consensus 302 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~i---------~~~ 364 (446)
T 4ejn_A 302 D-------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKL-FELI---------LME 364 (446)
T ss_dssp ------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHH---------HHC
T ss_pred C-------CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHH-HHHH---------HhC
Confidence 1 1223446799999999999999999999999999999999999999975432111 0000 000
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCC-----CCccCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPP-----SSSSMLK 917 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----sa~e~L~ 917 (941)
...+|. ...+.+.+||.+||..||++|+ +++|+++
T Consensus 365 -~~~~p~---------------------------------------~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 365 -EIRFPR---------------------------------------TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp -CCCCCT---------------------------------------TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred -CCCCCc---------------------------------------cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 001111 1122334677888888899998 9999999
Q ss_pred CCCCCCCCC
Q 002289 918 HPYVSSDVS 926 (941)
Q Consensus 918 Hpwf~~~~~ 926 (941)
||||++..+
T Consensus 405 hp~f~~~~~ 413 (446)
T 4ejn_A 405 HRFFAGIVW 413 (446)
T ss_dssp SGGGTTCCH
T ss_pred CccccCCCH
Confidence 999987654
No 68
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-41 Score=372.10 Aligned_cols=254 Identities=22% Similarity=0.328 Sum_probs=203.7
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|.+.+.||+|+||+||+|.. .+++.||||++...... ..+.+.+|+++++.++||||+++++++...+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36789999999999999999996 57899999998643211 235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+ +|+|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+|||+++++.+||+|||++......
T Consensus 88 ~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp ECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred EECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 9999 789999886654 4899999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
.......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... .+...+..
T Consensus 162 --------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~-----------~~~~~i~~ 222 (336)
T 3h4j_B 162 --------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP-----------NLFKKVNS 222 (336)
T ss_dssp --------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST-----------TCBCCCCS
T ss_pred --------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH-----------HHHHHHHc
Confidence 12234569999999999988776 68999999999999999999999643210 01111111
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
.....|.. .++.+.+||++||..||++|||++|+++||||+
T Consensus 223 ~~~~~p~~---------------------------------------~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~ 263 (336)
T 3h4j_B 223 CVYVMPDF---------------------------------------LSPGAQSLIRRMIVADPMQRITIQEIRRDPWFN 263 (336)
T ss_dssp SCCCCCTT---------------------------------------SCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHH
T ss_pred CCCCCccc---------------------------------------CCHHHHHHHHHHcCCChhHCcCHHHHHhChhhc
Confidence 11111111 112234688888999999999999999999997
Q ss_pred CCC
Q 002289 923 SDV 925 (941)
Q Consensus 923 ~~~ 925 (941)
...
T Consensus 264 ~~~ 266 (336)
T 3h4j_B 264 VNL 266 (336)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
No 69
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=8e-41 Score=388.74 Aligned_cols=265 Identities=24% Similarity=0.436 Sum_probs=220.6
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.+++....++|++.+.||+|+||+||+|.++++..||||+++... ...+.+.+|++++++++||||+++++++. .+..
T Consensus 180 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~ 257 (454)
T 1qcf_A 180 KDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPI 257 (454)
T ss_dssp TTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSC
T ss_pred ccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCcc
Confidence 345556678899999999999999999999888999999998644 34568999999999999999999999986 5678
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++|+|.++++......+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++..
T Consensus 258 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~ 334 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVI 334 (454)
T ss_dssp EEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGB
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEc
Confidence 99999999999999997654445788999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... ........++..|+|||++.+..++.++|||||||++|||+| |+.||....... ... .+
T Consensus 335 ~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~-~~~---------~i 398 (454)
T 1qcf_A 335 EDNE------YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE-VIR---------AL 398 (454)
T ss_dssp CCHH------HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-HHH---------HH
T ss_pred CCCc------eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH-HHH---------HH
Confidence 3211 111223346788999999999999999999999999999999 999997654321 111 11
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
..+.....+..++..+.+++.+||+.+|++||++.++++.|+.+...
T Consensus 399 ~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 399 ERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp HHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 22233345667788999999999999999999999999999987543
No 70
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=5.6e-41 Score=390.98 Aligned_cols=297 Identities=22% Similarity=0.292 Sum_probs=196.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeecccc-----CCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-----EGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-----~~~ 679 (941)
.++|++.+.||+|+||+||+|++. +++.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999965 68999999986532 2335678999999999999999999999843 357
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+ +|+|.+++... ..+++..++.++.||+.||+|||+.+ |+||||||+|||++.++.+||+|||+|+.
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchh
Confidence 89999998 67999999654 45899999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCcc--------------------ccccccccccCCCcccccccc-cCCCCchhHhHHHHHHHHHHHhC-----
Q 002289 760 APVPDIEGIV--------------------PAHVSTVVKGTPGYLDPEYFL-THKLTDKSDVYSLGVVFLELLTG----- 813 (941)
Q Consensus 760 ~~~~~~~~~~--------------------~~~~~~~~~gt~~y~aPE~~~-~~~~~~~sDVwSlG~ll~elltG----- 813 (941)
.......... .........||+.|+|||++. +..++.++|||||||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~ 285 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENV 285 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTC
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccc
Confidence 6432211000 012234567899999999864 56799999999999999999994
Q ss_pred ------CCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHH--------HHH
Q 002289 814 ------MQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEV--------MRE 879 (941)
Q Consensus 814 ------~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v--------~~~ 879 (941)
+.+|............ ................+..+...+ . .|+..++ ...
T Consensus 286 ~~~~~~~p~f~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~i~~~~-g-----~p~~~~~~~~~~~~~~~~ 350 (458)
T 3rp9_A 286 AYHADRGPLFPGSSCFPLSPDQ---------KAGNDFKFHTRGNRDQLNVIFNIL-G-----TPSEEDIEALEKEDAKRY 350 (458)
T ss_dssp SSGGGCCCSCC-----------------------------CHHHHHHHHHHHHHH-C-----CCCHHHHHTSSCHHHHHH
T ss_pred cccccccccCCCCccccccccc---------cccccccccccCCHHHHHHHHHHc-C-----CCCHHHHhhcCCHHHHHH
Confidence 4444322110000000 000000000111111221111111 0 1111111 000
Q ss_pred HH--------HhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 880 LE--------SIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 880 L~--------~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
+. .+...++...+.+.+||.+||++||++|+|++|+|+||||+..-
T Consensus 351 ~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~ 404 (458)
T 3rp9_A 351 IRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVR 404 (458)
T ss_dssp HTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred HHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcC
Confidence 00 11223344556678899999999999999999999999998753
No 71
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=372.39 Aligned_cols=261 Identities=25% Similarity=0.366 Sum_probs=195.9
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..++|++.+.||+|+||+||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3568999999999999999999976 58899999997543 34578899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEEeeeccccccCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKVADFGLSRLAPV 762 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl~DFGla~~~~~ 762 (941)
|+++|+|.+++... ..+++..++.++.|++.||+|||+.+ |+||||||+|||++. ++.+||+|||+++....
T Consensus 129 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 129 LVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203 (349)
T ss_dssp CCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred eCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence 99999999999654 35899999999999999999999999 999999999999975 88999999999986532
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||............
T Consensus 204 ~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~------------- 262 (349)
T 2w4o_A 204 Q--------VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRR------------- 262 (349)
T ss_dssp -----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHH-------------
T ss_pred c--------cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHH-------------
Confidence 1 1223456899999999999999999999999999999999999999754432111110
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
+..+....+. | ..+.......+||.+||..||++|||++|+|+||||.
T Consensus 263 ----------------i~~~~~~~~~--~--------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~ 310 (349)
T 2w4o_A 263 ----------------ILNCEYYFIS--P--------------WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVT 310 (349)
T ss_dssp ----------------HHTTCCCCCT--T--------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTT
T ss_pred ----------------HHhCCCccCC--c--------------hhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccC
Confidence 1111000000 0 0011222345789999999999999999999999998
Q ss_pred CCCCC
Q 002289 923 SDVSG 927 (941)
Q Consensus 923 ~~~~~ 927 (941)
+....
T Consensus 311 ~~~~~ 315 (349)
T 2w4o_A 311 GKAAN 315 (349)
T ss_dssp STTCC
T ss_pred CCccc
Confidence 76543
No 72
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.1e-40 Score=375.92 Aligned_cols=264 Identities=28% Similarity=0.452 Sum_probs=217.9
Q ss_pred HHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 604 MALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 604 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
+....++|.+.+.||+|+||.||+|.+. +++.||||+++..... ..+.+.+|++++++++||||+++++++...+..+
T Consensus 109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 188 (377)
T 3cbl_A 109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY 188 (377)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred cEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE
Confidence 3445678889999999999999999986 7899999998764332 3457899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.++++... ..+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 189 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~ 264 (377)
T 3cbl_A 189 IVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEA 264 (377)
T ss_dssp EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECT
T ss_pred EEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecC
Confidence 9999999999999997543 34889999999999999999999999 9999999999999999999999999998643
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... ........++..|+|||++.+..++.++|||||||++|||++ |+.||........ .. .+.
T Consensus 265 ~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~--~~--------~~~ 329 (377)
T 3cbl_A 265 DGVY-----AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQT--RE--------FVE 329 (377)
T ss_dssp TSEE-----ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHH--HH--------HHH
T ss_pred CCce-----eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH--HH--------HHH
Confidence 2110 111112235678999999999999999999999999999998 9999976543211 11 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.+.....|..++..+.+++..||+.+|++||++.++++.|+++.+.
T Consensus 330 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 330 KGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 2233445666778899999999999999999999999999988653
No 73
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=8.8e-41 Score=377.92 Aligned_cols=253 Identities=26% Similarity=0.373 Sum_probs=201.3
Q ss_pred cceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEecCCCCCH
Q 002289 614 STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNGTL 692 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~~~~gsL 692 (941)
.+.||+|+||.||+|... +|+.||+|+++.......+.+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 568999999999999964 6899999999876666677899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE--cCCCcEEEeeeccccccCCCCCCCccc
Q 002289 693 RDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL--DHKFTAKVADFGLSRLAPVPDIEGIVP 770 (941)
Q Consensus 693 ~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl--~~~~~~kl~DFGla~~~~~~~~~~~~~ 770 (941)
.+++.... ..+++..++.++.||++||+|||+.+ |+||||||+|||+ +.++.+||+|||+++......
T Consensus 174 ~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~------ 243 (373)
T 2x4f_A 174 FDRIIDES-YNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE------ 243 (373)
T ss_dssp HHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC------
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc------
Confidence 99886532 35889999999999999999999999 9999999999999 567899999999998764321
Q ss_pred cccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChH
Q 002289 771 AHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSE 850 (941)
Q Consensus 771 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (941)
......||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 244 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~------------------------- 296 (373)
T 2x4f_A 244 --KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET------------------------- 296 (373)
T ss_dssp --BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-------------------------
T ss_pred --ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH-------------------------
Confidence 12334689999999999999999999999999999999999999975443111
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
+.++....+...+.. ++...+.+.+||.+||..||++|||++|+|+||||+..
T Consensus 297 ----~~~i~~~~~~~~~~~-----------------~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 297 ----LNNILACRWDLEDEE-----------------FQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp ----HHHHHHTCCCSCSGG-----------------GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred ----HHHHHhccCCCChhh-----------------hccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 111111111111110 11223344578999999999999999999999999764
No 74
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8.5e-41 Score=392.50 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=178.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|.+.+.||+|+||.||+|+.. +|+.||+|++...... ..+.+.+|++++++++||||+++++++...+..++|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 467888999999999999999975 6999999998753222 235688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 684 YEFMSNGTLRDQLSAKS--KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
|||++||+|.+++.... ...+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999997643 446999999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 341 ~~~-------~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~ 392 (543)
T 3c4z_A 341 AGQ-------TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR 392 (543)
T ss_dssp TTC-------CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred CCC-------cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence 321 1123457999999999999999999999999999999999999999754
No 75
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=362.89 Aligned_cols=254 Identities=26% Similarity=0.390 Sum_probs=197.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--------------------------hhHhHHHHHHHHH
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--------------------------GEKEFLTEIQFLS 660 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--------------------------~~~~~~~E~~~l~ 660 (941)
.++|++.+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 467999999999999999999964 6899999998754321 1246889999999
Q ss_pred hcCCCceeeeeecccc--CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCC
Q 002289 661 RLHHRNLVSLVGYCDE--EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKA 738 (941)
Q Consensus 661 ~l~h~nIv~l~~~~~~--~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp 738 (941)
+++||||+++++++.+ .+..++||||+++++|.+++. ...+++..++.++.|+++||+|||+++ |+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCH
Confidence 9999999999999876 568899999999999988653 235899999999999999999999999 99999999
Q ss_pred CcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCC---CCchhHhHHHHHHHHHHHhCCC
Q 002289 739 SNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHK---LTDKSDVYSLGVVFLELLTGMQ 815 (941)
Q Consensus 739 ~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDVwSlG~ll~elltG~~ 815 (941)
+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~ 238 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSD-------ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQC 238 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSS-------CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSC
T ss_pred HHEEECCCCCEEEecCCCcccccccc-------ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCC
Confidence 99999999999999999998654321 1223456899999999998765 3778999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCc
Q 002289 816 PISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTP 895 (941)
Q Consensus 816 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~ 895 (941)
||....... .. ..+.......|. . +...+...
T Consensus 239 pf~~~~~~~-~~-----------------------------~~~~~~~~~~~~-~-----------------~~~~~~l~ 270 (298)
T 2zv2_A 239 PFMDERIMC-LH-----------------------------SKIKSQALEFPD-Q-----------------PDIAEDLK 270 (298)
T ss_dssp SSCCSSHHH-HH-----------------------------HHHHHCCCCCCS-S-----------------SCCCHHHH
T ss_pred CCCCccHHH-HH-----------------------------HHHhcccCCCCC-c-----------------cccCHHHH
Confidence 997543211 00 000000000000 0 11122234
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 896 EFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 896 dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
++|.+||..||++|||++|+++||||+
T Consensus 271 ~li~~~l~~dp~~R~s~~e~l~hp~~~ 297 (298)
T 2zv2_A 271 DLITRMLDKNPESRIVVPEIKLHPWVT 297 (298)
T ss_dssp HHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred HHHHHHhhcChhhCCCHHHHhcCcccc
Confidence 688889999999999999999999985
No 76
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.7e-40 Score=365.99 Aligned_cols=259 Identities=20% Similarity=0.291 Sum_probs=184.1
Q ss_pred cceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeeccccCCcEEEEEecCCCCC
Q 002289 614 STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYEFMSNGT 691 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~LV~e~~~~gs 691 (941)
.+.||+|+||+||+|... +++.||||++... ....+.+|+++++.+. ||||+++++++.+.+..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 378999999999999975 6899999998642 3457789999999997 9999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC---cEEEeeeccccccCCCCCCCc
Q 002289 692 LRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF---TAKVADFGLSRLAPVPDIEGI 768 (941)
Q Consensus 692 L~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~---~~kl~DFGla~~~~~~~~~~~ 768 (941)
|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++ .+||+|||+++......
T Consensus 93 L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~---- 163 (325)
T 3kn6_A 93 LFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN---- 163 (325)
T ss_dssp HHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCC----
Confidence 99999765 35899999999999999999999999 99999999999997765 89999999998653321
Q ss_pred cccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCC
Q 002289 769 VPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYP 848 (941)
Q Consensus 769 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (941)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||........ . ..
T Consensus 164 ---~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-------~-------------~~ 220 (325)
T 3kn6_A 164 ---QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT-------C-------------TS 220 (325)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--------------C-------------CC
T ss_pred ---CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc-------c-------------cc
Confidence 122345689999999999999999999999999999999999999964321000 0 00
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 849 SECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 849 ~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
..+++.......+...+ .. .....+.+.+||.+||..||++|||++|+++||||+....
T Consensus 221 ------~~~~~~~i~~~~~~~~~--~~-----------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~ 279 (325)
T 3kn6_A 221 ------AVEIMKKIKKGDFSFEG--EA-----------WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQ 279 (325)
T ss_dssp ------HHHHHHHHTTTCCCCCS--HH-----------HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCC
T ss_pred ------HHHHHHHHHcCCCCCCc--cc-----------ccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCcc
Confidence 00011111111100000 00 0012233457899999999999999999999999987543
No 77
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.7e-40 Score=372.45 Aligned_cols=270 Identities=25% Similarity=0.429 Sum_probs=220.7
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCCch-hhHhHHHHHHHHHhc-CCCceeee
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRL-HHRNLVSL 670 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~nIv~l 670 (941)
+...++....++|++.+.||+|+||.||+|++ .+++.||||+++..... ..+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 45567777889999999999999999999983 24689999999864433 346799999999999 79999999
Q ss_pred eeccccCC-cEEEEEecCCCCCHHHHHhhcCC------------------------------------------------
Q 002289 671 VGYCDEEG-EQMLVYEFMSNGTLRDQLSAKSK------------------------------------------------ 701 (941)
Q Consensus 671 ~~~~~~~~-~~~LV~e~~~~gsL~~~l~~~~~------------------------------------------------ 701 (941)
++++.+.+ ..++||||+++|+|.++++....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 99987755 48999999999999999976432
Q ss_pred ----------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 702 ----------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 702 ----------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
..+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 12899999999999999999999999 99999999999999999999999999986533221
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
........||+.|+|||++.+..++.++|||||||++|||++ |+.||............ +..+..
T Consensus 249 -----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~---------~~~~~~ 314 (359)
T 3vhe_A 249 -----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR---------LKEGTR 314 (359)
T ss_dssp -----CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHH---------HHHTCC
T ss_pred -----chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHH---------HHcCCC
Confidence 122344568899999999999999999999999999999998 99999764432211111 112223
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
...+..++..+.+++..|++.+|.+||++.+++++|+.+..
T Consensus 315 ~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 355 (359)
T 3vhe_A 315 MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 355 (359)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence 34455667789999999999999999999999999998765
No 78
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.4e-41 Score=378.87 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=168.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHH-HHhcCCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.+.||+|+||.||+|+.+ +++.||||+++..... ....+.+|..+ ++.++||||+++++++.+.+..++
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 357889999999999999999975 5899999999754322 23456677776 577899999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.+++.+.. .+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 117 v~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 999999999999997643 4888999999999999999999999 99999999999999999999999999985322
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
. ........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 192 ~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~ 243 (373)
T 2r5t_A 192 H-------NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN 243 (373)
T ss_dssp C-------CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB
T ss_pred C-------CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence 1 122345679999999999999999999999999999999999999997544
No 79
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.1e-39 Score=378.74 Aligned_cols=256 Identities=29% Similarity=0.449 Sum_probs=215.7
Q ss_pred HHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCC-cEEE
Q 002289 604 MALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG-EQML 682 (941)
Q Consensus 604 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~L 682 (941)
+....++|++.+.||+|+||.||+|.+. |+.||||+++... ..+.|.+|++++++++||||+++++++...+ ..++
T Consensus 188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~i 264 (450)
T 1k9a_A 188 WALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 264 (450)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEE
T ss_pred cccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEE
Confidence 3345678889999999999999999985 7899999998643 4567999999999999999999999986654 7999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.+++.......+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 265 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 341 (450)
T 1k9a_A 265 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341 (450)
T ss_dssp EEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence 999999999999998776666899999999999999999999999 99999999999999999999999999985422
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
. .....++..|+|||++.+..++.++|||||||++|||++ |+.||........ ...+..
T Consensus 342 ~----------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~----------~~~i~~ 401 (450)
T 1k9a_A 342 T----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV----------VPRVEK 401 (450)
T ss_dssp ---------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH----------HHHHHT
T ss_pred c----------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH----------HHHHHc
Confidence 1 112246789999999999999999999999999999998 9999975432111 111222
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
+.....|..++..+.+++..||+.+|.+||++.++++.|+.+..
T Consensus 402 ~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 402 GYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 33345667788899999999999999999999999999998865
No 80
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=4.4e-40 Score=372.32 Aligned_cols=261 Identities=27% Similarity=0.458 Sum_probs=204.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.+.||+|+||.||+|++. ++..||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 467899999999999999999864 577899999976432 335679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.++++.. ...+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 124 v~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 99999999999999754 345899999999999999999999999 99999999999999999999999999986643
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.... ........+++.|+|||++.+..++.++|||||||++|||++ |+.||....... ... .+..
T Consensus 200 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~-~~~---------~i~~ 265 (373)
T 2qol_A 200 DPEA----AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD-VIK---------AVDE 265 (373)
T ss_dssp ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH-HHH---------HHHT
T ss_pred CCcc----ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH-HHH---------HHHc
Confidence 2110 111122345778999999999999999999999999999998 999997654321 111 1111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
+.....+..++..+.+++..||+.+|.+||++.++++.|+.+...
T Consensus 266 ~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 266 GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp TEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 122334556778899999999999999999999999999988653
No 81
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2e-40 Score=366.57 Aligned_cols=283 Identities=20% Similarity=0.305 Sum_probs=203.7
Q ss_pred hcCCCcc-ceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++. +.||+|+||+||+|... +++.||||++........+.+.+|+++++++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567774 78999999999999964 7899999999876555567899999999985 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc---EEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT---AKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~---~kl~DFGla~~~~ 761 (941)
||+++|+|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++. +||+|||+++...
T Consensus 91 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK 165 (316)
T ss_dssp ECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred EcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence 9999999999997653 4889999999999999999999999 999999999999998776 9999999997654
Q ss_pred CCCCCCccccccccccccCCCccccccccc-----CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-----HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
.................||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ..
T Consensus 166 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~----------~~ 235 (316)
T 2ac3_A 166 LNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSD----------CG 235 (316)
T ss_dssp ----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSC----------SC
T ss_pred cCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccc----------cc
Confidence 322111111122234569999999999875 557889999999999999999999997543210 00
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
+ ............+.+.+..... ..|. . ..........+||.+||..||++|||++|+|
T Consensus 236 ~-----~~~~~~~~~~~~~~~~i~~~~~----~~~~-~-----------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l 294 (316)
T 2ac3_A 236 W-----DRGEACPACQNMLFESIQEGKY----EFPD-K-----------DWAHISCAAKDLISKLLVRDAKQRLSAAQVL 294 (316)
T ss_dssp C---------CCHHHHHHHHHHHHHCCC----CCCH-H-----------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred c-----cccccchhHHHHHHHHHhccCc----ccCc-h-----------hcccCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence 0 0000111112222222221110 0110 0 0012233456899999999999999999999
Q ss_pred CCCCCCCCCC
Q 002289 917 KHPYVSSDVS 926 (941)
Q Consensus 917 ~Hpwf~~~~~ 926 (941)
+||||++...
T Consensus 295 ~hp~~~~~~~ 304 (316)
T 2ac3_A 295 QHPWVQGCAP 304 (316)
T ss_dssp HSTTCC----
T ss_pred cChhhcCCCC
Confidence 9999987543
No 82
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.4e-40 Score=358.68 Aligned_cols=262 Identities=26% Similarity=0.432 Sum_probs=216.0
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
.+....++|++.+.||+|+||+||+|.+.++..||+|+++.... ..+++.+|++++++++||||+++++++.+.+..++
T Consensus 18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 96 (283)
T 3gen_A 18 SWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFI 96 (283)
T ss_dssp TTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred CccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEE
Confidence 44455778999999999999999999998888999999986443 34679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++....
T Consensus 97 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 97 ITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp EECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred EEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 999999999999996532 35899999999999999999999999 99999999999999999999999999986532
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......... . .+..
T Consensus 173 ~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~-~---------~~~~ 236 (283)
T 3gen_A 173 DE------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA-E---------HIAQ 236 (283)
T ss_dssp HH------HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-H---------HHHT
T ss_pred cc------cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHH-H---------HHhc
Confidence 21 112233446788999999999999999999999999999998 99999765432111 1 1112
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
+.....+..++..+.+++..||+.+|.+||++.++++.|+++.+
T Consensus 237 ~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 237 GLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 22233445556789999999999999999999999999998765
No 83
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.5e-40 Score=384.24 Aligned_cols=264 Identities=30% Similarity=0.469 Sum_probs=215.8
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
+.+....++|++.+.||+|+||.||+|.++++..||||+++.... ..+.|.+|++++++++||||+++++++.+ +..+
T Consensus 177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~ 254 (452)
T 1fmk_A 177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY 254 (452)
T ss_dssp TCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred cccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceE
Confidence 445556788999999999999999999998888899999986443 34679999999999999999999999876 6789
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 255 iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~ 331 (452)
T 1fmk_A 255 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIE 331 (452)
T ss_dssp EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred EEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecC
Confidence 9999999999999997644456899999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... .......++..|+|||++.+..++.++|||||||++|||++ |+.||....... ... .+.
T Consensus 332 ~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~-~~~---------~i~ 395 (452)
T 1fmk_A 332 DNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE-VLD---------QVE 395 (452)
T ss_dssp -----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHH---------HHH
T ss_pred CCce------ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH-HHH---------HHH
Confidence 3211 11223446789999999999999999999999999999999 999997554321 111 112
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.+.....+..++..+.+++..||+.+|++||++.++++.|+.+...
T Consensus 396 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 396 RGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 2233445667788999999999999999999999999999987543
No 84
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.2e-40 Score=368.31 Aligned_cols=265 Identities=29% Similarity=0.484 Sum_probs=218.7
Q ss_pred HHHHhcCCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeecccc
Q 002289 604 MALATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDE 676 (941)
Q Consensus 604 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 676 (941)
+....++|++.+.||+|+||.||+|++. +++.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 121 (343)
T 1luf_A 42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 121 (343)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence 3445688999999999999999999974 3489999999864333 35678999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcC----------------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEec
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKS----------------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHR 734 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~----------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~ 734 (941)
.+..++||||+++|+|.+++.... ...+++..++.++.||++||+|||+++ |+||
T Consensus 122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~ 198 (343)
T 1luf_A 122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVHR 198 (343)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCS
T ss_pred CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecC
Confidence 999999999999999999997642 256899999999999999999999999 9999
Q ss_pred cCCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-C
Q 002289 735 DIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-G 813 (941)
Q Consensus 735 DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G 813 (941)
||||+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |
T Consensus 199 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g 273 (343)
T 1luf_A 199 DLATRNCLVGENMVVKIADFGLSRNIYSADY-----YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYG 273 (343)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGC-----BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcceEEECCCCeEEEeecCCCcccccCcc-----ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcC
Confidence 9999999999999999999999976532211 112234457889999999999999999999999999999999 9
Q ss_pred CCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 814 MQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 814 ~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
+.||....... .. ..+..+.....+..++..+.+++..||+.+|.+||++.++++.|+++...
T Consensus 274 ~~p~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~ 336 (343)
T 1luf_A 274 LQPYYGMAHEE-VI---------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCER 336 (343)
T ss_dssp CCTTTTSCHHH-HH---------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred CCcCCCCChHH-HH---------HHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence 99997544311 11 12223334455667778899999999999999999999999999987653
No 85
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=6.3e-41 Score=372.99 Aligned_cols=286 Identities=22% Similarity=0.354 Sum_probs=203.3
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchh--hHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG--EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||+||+|+.. +++.||||+++...... .+.+.+|++++++++||||+++++++...+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 3568999999999999999999964 78999999997543322 35678999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE-----cCCCcEEEeeecccc
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL-----DHKFTAKVADFGLSR 758 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl-----~~~~~~kl~DFGla~ 758 (941)
|||++ |+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||+ +.++.+||+|||+++
T Consensus 112 ~e~~~-~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 112 FEYAE-NDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp EECCS-EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred EecCC-CCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 99996 59999997654 4889999999999999999999999 9999999999999 455669999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
...... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||............ .....
T Consensus 186 ~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~-~~~~~-- 255 (329)
T 3gbz_A 186 AFGIPI-------RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKI-FEVLG-- 255 (329)
T ss_dssp HHC------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHHHC--
T ss_pred ccCCcc-------cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHH-HHHhC--
Confidence 654221 222345679999999999874 4899999999999999999999999765543222111 10000
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHhcccCCCCC-CCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 838 SVIDGNMGSYPSECVEKFIKLALKCCQDETDAR-PSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~R-Ps~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
.......+. ...+ .......|..+ ........ ...++.+.+||.+||+.||++|||++|+|
T Consensus 256 ---~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~~~L~~dP~~R~t~~e~l 317 (329)
T 3gbz_A 256 ---LPDDTTWPG-----VTAL-PDWKQSFPKFRGKTLKRVLG---------ALLDDEGLDLLTAMLEMDPVKRISAKNAL 317 (329)
T ss_dssp ---CCCTTTSTT-----GGGS-TTCCTTCCCCCCCCHHHHHG---------GGSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ---CCchhhhhh-----hhhh-hhhhhhhhhhccccHhhhcc---------cccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 000000000 0000 00001111111 12221110 11234456899999999999999999999
Q ss_pred CCCCCCCCCC
Q 002289 917 KHPYVSSDVS 926 (941)
Q Consensus 917 ~Hpwf~~~~~ 926 (941)
+||||++..+
T Consensus 318 ~hp~f~~~~~ 327 (329)
T 3gbz_A 318 EHPYFSHNDF 327 (329)
T ss_dssp TSGGGSSSCS
T ss_pred CCcccCCCCC
Confidence 9999998543
No 86
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9e-40 Score=357.64 Aligned_cols=257 Identities=25% Similarity=0.395 Sum_probs=208.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 468999999999999999999965 689999999864322 2346789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.... ++++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 90 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 99999999999997654 5899999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||............ +...
T Consensus 165 ~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~----------~~~~ 228 (294)
T 4eqm_A 165 S------LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKH----------IQDS 228 (294)
T ss_dssp ----------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHH----------HSSC
T ss_pred c------ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH----------hhcc
Confidence 1 12223456899999999999999999999999999999999999999765543222111 1111
Q ss_pred CC----CCChHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHhHh
Q 002289 844 MG----SYPSECVEKFIKLALKCCQDETDARP-SMSEVMRELESIWN 885 (941)
Q Consensus 844 ~~----~~~~~~~~~l~~l~~~c~~~~p~~RP-s~~~v~~~L~~~~~ 885 (941)
.+ ..+..++..+.+++.+|++.+|.+|| ++.++.+.|+.+..
T Consensus 229 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 229 VPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred CCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 11 12334567889999999999999998 88888888876643
No 87
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=368.47 Aligned_cols=265 Identities=26% Similarity=0.458 Sum_probs=219.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC--------CCcEEEEEEeccCCch-hhHhHHHHHHHHHhc-CCCceeeeeecccc
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 676 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~ 676 (941)
..++|.+.+.||+|+||+||+|++. ++..||||+++..... ..+.+.+|+++++++ +||||+++++++..
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 4578899999999999999999852 2467999999765333 346789999999999 99999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcC--------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEE
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKS--------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNIL 742 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NIL 742 (941)
.+..++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEE
Confidence 999999999999999999997654 245899999999999999999999999 999999999999
Q ss_pred EcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCc
Q 002289 743 LDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGK 821 (941)
Q Consensus 743 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~ 821 (941)
++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||....
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~ 298 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDY-----YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 298 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCT-----TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred EcCCCcEEEcccCcccccccccc-----cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999986643321 112233457889999999999999999999999999999999 999997543
Q ss_pred hhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 822 NIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
. .+... .+..+.....+..++..+.+++..||+.+|++||++.++++.|+++......
T Consensus 299 ~-~~~~~---------~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 356 (382)
T 3tt0_A 299 V-EELFK---------LLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 356 (382)
T ss_dssp H-HHHHH---------HHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCS
T ss_pred H-HHHHH---------HHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 2 11111 1122223345566778899999999999999999999999999998776543
No 88
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.4e-40 Score=374.74 Aligned_cols=260 Identities=22% Similarity=0.307 Sum_probs=195.8
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..++|++.+.||+|+||+||+|+.. +++.||||++..... ..+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 3568999999999999999999976 789999999976432 34578899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc--EEEeeeccccccCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT--AKVADFGLSRLAPVP 763 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~--~kl~DFGla~~~~~~ 763 (941)
|+++|+|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+|||++.++. +||+|||+++.....
T Consensus 97 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~ 171 (361)
T 3uc3_A 97 YASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH 171 (361)
T ss_dssp CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred eCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCcccccccc
Confidence 999999999997644 4899999999999999999999999 999999999999987765 999999998743221
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCch-hHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDK-SDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDG 842 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (941)
.......||+.|+|||++.+..++.+ +||||+||++|||++|+.||..........
T Consensus 172 --------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~--------------- 228 (361)
T 3uc3_A 172 --------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYR--------------- 228 (361)
T ss_dssp -----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHH---------------
T ss_pred --------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHH---------------
Confidence 12234569999999999998887766 899999999999999999996432210000
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 843 NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 843 ~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
..+..+ ..... ..|. .....+.+.+||.+||..||++|||++|+++||||.
T Consensus 229 ----------~~~~~~----~~~~~-~~~~--------------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~ 279 (361)
T 3uc3_A 229 ----------KTIQRI----LSVKY-SIPD--------------DIRISPECCHLISRIFVADPATRISIPEIKTHSWFL 279 (361)
T ss_dssp ----------HHHHHH----HTTCC-CCCT--------------TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHH
T ss_pred ----------HHHHHH----hcCCC-CCCC--------------cCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchh
Confidence 000000 00000 0000 001122334688889999999999999999999995
Q ss_pred CC
Q 002289 923 SD 924 (941)
Q Consensus 923 ~~ 924 (941)
..
T Consensus 280 ~~ 281 (361)
T 3uc3_A 280 KN 281 (361)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 89
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-41 Score=368.86 Aligned_cols=251 Identities=24% Similarity=0.337 Sum_probs=198.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.++||+|+||+||+|++. +|+.||||++..... .....+..|+..+.++ +|+||+++++++.+.+..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 468999999999999999999976 799999999865332 2334556666666555 899999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+ +++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||++......
T Consensus 136 ~e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp EECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred Eecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 9999 789999887653 45999999999999999999999999 999999999999999999999999998765332
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|+|||++.+ .++.++|||||||++|||++|..|+....... .+..+
T Consensus 211 --------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-------------~~~~~- 267 (311)
T 3p1a_A 211 --------GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQ-------------QLRQG- 267 (311)
T ss_dssp ------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHH-------------HHTTT-
T ss_pred --------CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHH-------------HHhcc-
Confidence 12234568999999999876 78999999999999999999977765322110 00000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..+.+.. ....+...+++.+||..||++|||++|+|+||||+.
T Consensus 268 --~~~~~~~-----------------------------------~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~ 310 (311)
T 3p1a_A 268 --YLPPEFT-----------------------------------AGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ 310 (311)
T ss_dssp --CCCHHHH-----------------------------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred --CCCcccc-----------------------------------cCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence 0111100 112233457888899999999999999999999976
No 90
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=3.6e-40 Score=380.05 Aligned_cols=286 Identities=19% Similarity=0.250 Sum_probs=211.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhc------CCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL------HHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~l~~~~~~~~~~ 680 (941)
..+|++.+.||+|+||+||+|... +++.||||+++.. ....+.+.+|+++++.+ +|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 467999999999999999999865 5899999999753 23345778898888887 567999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc--EEEeeecccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT--AKVADFGLSR 758 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~--~kl~DFGla~ 758 (941)
++||||+. ++|.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||++.++. +||+|||+|+
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999995 79999998776667999999999999999999999999 999999999999999887 9999999997
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ +.... +
T Consensus 251 ~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~-l~~i~------~ 313 (429)
T 3kvw_A 251 YEHQ----------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQ-LACMI------E 313 (429)
T ss_dssp ETTC----------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHH------H
T ss_pred ecCC----------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHH-HHHHH------H
Confidence 5432 12335689999999999999999999999999999999999999976543221 11111 0
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCC---------------------C------CCCHHHHHHHHHHhHhhCCCCC
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETD---------------------A------RPSMSEVMRELESIWNMMPESD 891 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~---------------------~------RPs~~~v~~~L~~~~~~~~~~~ 891 (941)
. .+..+.+....... ....+..... . .|...+.... .....+
T Consensus 314 ~----~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ 382 (429)
T 3kvw_A 314 L----LGMPSQKLLDASKR-AKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNA------LKGCDD 382 (429)
T ss_dssp H----HCCCCHHHHHTBTT-HHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHH------TTTCCC
T ss_pred H----cCCCCHHHHHhhhh-hhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhh------ccccch
Confidence 0 11112222111100 0111100000 0 0001111110 011223
Q ss_pred CCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 892 TKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 892 ~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
+.+.+||.+||++||++||||+|+|+||||+....
T Consensus 383 ~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~~ 417 (429)
T 3kvw_A 383 PLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLP 417 (429)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC----
T ss_pred HHHHHHHHHHCCCChhhCCCHHHHhCChhhccCCC
Confidence 45678999999999999999999999999987543
No 91
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=3.2e-40 Score=357.72 Aligned_cols=259 Identities=22% Similarity=0.327 Sum_probs=208.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
.++|++.+.||+|+||+||+|... ++..||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 567999999999999999999975 5789999998765555567899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccccCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~~~~ 763 (941)
+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||++ +.++.+||+|||++......
T Consensus 88 ~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~ 162 (277)
T 3f3z_A 88 CTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG 162 (277)
T ss_dssp CCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT
T ss_pred cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc
Confidence 99999999987643 4889999999999999999999999 9999999999999 78899999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
. ......||+.|+|||++.+. ++.++||||||+++|||++|+.||........... +..+
T Consensus 163 ~--------~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~----------~~~~- 222 (277)
T 3f3z_A 163 K--------MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLK----------IREG- 222 (277)
T ss_dssp S--------CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH----------HHHC-
T ss_pred c--------chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHH----------HHhC-
Confidence 1 22344689999999998664 89999999999999999999999975443211100 0000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
...++.... ....+...+++.+||..||++|||+.|+|+||||+.
T Consensus 223 ~~~~~~~~~-----------------------------------~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~ 267 (277)
T 3f3z_A 223 TFTFPEKDW-----------------------------------LNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEK 267 (277)
T ss_dssp CCCCCHHHH-----------------------------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHH
T ss_pred CCCCCchhh-----------------------------------hcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence 011111100 111223346888899999999999999999999976
Q ss_pred CCC
Q 002289 924 DVS 926 (941)
Q Consensus 924 ~~~ 926 (941)
...
T Consensus 268 ~~~ 270 (277)
T 3f3z_A 268 QLS 270 (277)
T ss_dssp HHC
T ss_pred ccc
Confidence 433
No 92
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.2e-40 Score=361.76 Aligned_cols=286 Identities=23% Similarity=0.331 Sum_probs=209.0
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
++|++.+.||+|+||+||+|... +|+.||||++...... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 67999999999999999999975 5899999988654332 24678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++++|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 156 (311)
T 4agu_A 83 YCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPS- 156 (311)
T ss_dssp CCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred eCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc-
Confidence 99999999988654 34889999999999999999999999 9999999999999999999999999998654221
Q ss_pred CCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||..|+|||++.+ ..++.++||||+||++|||++|+.||.............. ..
T Consensus 157 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~-------~~---- 219 (311)
T 4agu_A 157 ------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRK-------TL---- 219 (311)
T ss_dssp ---------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH-------HH----
T ss_pred ------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-------Hh----
Confidence 12234568999999999986 6789999999999999999999999976554322111110 00
Q ss_pred CCCChHHHHHHHH--HHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCC
Q 002289 845 GSYPSECVEKFIK--LALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVS 922 (941)
Q Consensus 845 ~~~~~~~~~~l~~--l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~ 922 (941)
+.........+.. ........+|....... ...+.......+|+.+||..||++|||++|+|+||||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~ 289 (311)
T 4agu_A 220 GDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLE----------LKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFE 289 (311)
T ss_dssp CSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHH----------HHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGT
T ss_pred cccccccccccccccccccCcCCCccccchhh----------hhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHH
Confidence 0111111110000 00000011111111111 11233444566899999999999999999999999998
Q ss_pred CCCCC
Q 002289 923 SDVSG 927 (941)
Q Consensus 923 ~~~~~ 927 (941)
+-..-
T Consensus 290 ~~~~~ 294 (311)
T 4agu_A 290 NIREI 294 (311)
T ss_dssp TCC--
T ss_pred hccCH
Confidence 75443
No 93
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=8.9e-40 Score=362.42 Aligned_cols=259 Identities=24% Similarity=0.342 Sum_probs=209.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||.||+|... +|+.||+|+++..... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467999999999999999999975 6899999998754322 246789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC----cEEEeeecc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF----TAKVADFGL 756 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~----~~kl~DFGl 756 (941)
++||||+++++|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++ .+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~ 165 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (321)
T ss_dssp EEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTT
T ss_pred EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCcc
Confidence 9999999999999999654 45899999999999999999999999 99999999999999888 799999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...
T Consensus 166 ~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~------- 229 (321)
T 2a2a_A 166 AHEIEDGV--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET-LAN------- 229 (321)
T ss_dssp CEECCTTC--------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HHH-------
T ss_pred ceecCccc--------cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHH-HHH-------
Confidence 98654321 12344689999999999999999999999999999999999999975432111 000
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
+.. ....++... .........+||.+||..||++|||++|++
T Consensus 230 --i~~-~~~~~~~~~-----------------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l 271 (321)
T 2a2a_A 230 --ITS-VSYDFDEEF-----------------------------------FSHTSELAKDFIRKLLVKETRKRLTIQEAL 271 (321)
T ss_dssp --HHT-TCCCCCHHH-----------------------------------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHH
T ss_pred --HHh-cccccChhh-----------------------------------hcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 000 000111110 011223345789999999999999999999
Q ss_pred CCCCCCCCC
Q 002289 917 KHPYVSSDV 925 (941)
Q Consensus 917 ~Hpwf~~~~ 925 (941)
+||||+...
T Consensus 272 ~hp~~~~~~ 280 (321)
T 2a2a_A 272 RHPWITPVD 280 (321)
T ss_dssp HSTTTSCSS
T ss_pred cCccccCCC
Confidence 999998643
No 94
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=9.7e-40 Score=362.26 Aligned_cols=268 Identities=24% Similarity=0.294 Sum_probs=208.2
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCC----cEE
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQM 681 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~----~~~ 681 (941)
...++|++.+.||+|+||+||+|++. ++.||||++.... .....+.+|+.++++++||||+++++++.... ..+
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 98 (322)
T 3soc_A 21 FQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW 98 (322)
T ss_dssp ETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred cchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence 34678999999999999999999875 7999999997533 23345667999999999999999999997644 469
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC----------CCCCeEeccCCCCcEEEcCCCcEEE
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE----------ADPPVFHRDIKASNILLDHKFTAKV 751 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~----------~~~~ivH~DLkp~NILl~~~~~~kl 751 (941)
+||||+++|+|.++++.. .+++..++.++.|+++||+|||+. + |+||||||+|||++.++.+||
T Consensus 99 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL 172 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACI 172 (322)
T ss_dssp EEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEE
T ss_pred EEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEE
Confidence 999999999999999764 389999999999999999999998 7 999999999999999999999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCcccccccccC-----CCCchhHhHHHHHHHHHHHhCCCCCCCCchhH--
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-----KLTDKSDVYSLGVVFLELLTGMQPISHGKNIV-- 824 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~-- 824 (941)
+|||+++....... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||....+..
T Consensus 173 ~DFg~a~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~ 247 (322)
T 3soc_A 173 ADFGLALKFEAGKS-----AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYML 247 (322)
T ss_dssp CCCTTCEEECTTSC-----CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCC
T ss_pred ccCCcccccccccC-----ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhcc
Confidence 99999986643321 1122345689999999999873 45668899999999999999999996432100
Q ss_pred HHHHHHHh---hccchh-hhcCC-CCCC-----ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 825 REVNIAYQ---SSMMFS-VIDGN-MGSY-----PSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 825 ~~~~~~~~---~~~~~~-~~~~~-~~~~-----~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.+...... ...+.. ..... .+.. ...++..+.+++.+||+.+|++||++.++++.|+.+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 248 PFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp TTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred chhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00000000 000000 11111 1111 235677899999999999999999999999999988653
No 95
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.1e-40 Score=381.26 Aligned_cols=301 Identities=23% Similarity=0.299 Sum_probs=207.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccC--CchhhHhHHHHHHHHHhcCCCceeeeeeccccC-----Cc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-----~~ 679 (941)
.++|++.+.||+|+||.||+|++. +++.||||+++.. .....+.+.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999975 6899999999753 223356789999999999999999999998765 57
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||++ |+|.+++... ..+++..++.++.||++||+|||+.+ |+||||||+|||++.++.+||+|||+|+.
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCC-cCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 899999995 6999999654 45899999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCcc---------------ccccccccccCCCccccccc-ccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchh
Q 002289 760 APVPDIEGIV---------------PAHVSTVVKGTPGYLDPEYF-LTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNI 823 (941)
Q Consensus 760 ~~~~~~~~~~---------------~~~~~~~~~gt~~y~aPE~~-~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~ 823 (941)
.......... .........||+.|+|||++ .+..++.++||||+||++|||++|..||.....-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~ 258 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTN 258 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGG
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccccc
Confidence 6433211000 00123566799999999986 4567999999999999999999865555321100
Q ss_pred HHHHHHHHhhccchhhhcCC----------CCCCC-hHHHHHHHHHHHHhcccCCC--CCCCHHHHHHHHHH--------
Q 002289 824 VREVNIAYQSSMMFSVIDGN----------MGSYP-SECVEKFIKLALKCCQDETD--ARPSMSEVMRELES-------- 882 (941)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~l~~l~~~c~~~~p~--~RPs~~~v~~~L~~-------- 882 (941)
. .-.+.+. ..... ......+..++..+-....+ .+....++.+.+..
T Consensus 259 ~------------~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (432)
T 3n9x_A 259 R------------FPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPIN 326 (432)
T ss_dssp C------------CCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCC
T ss_pred c------------cccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCC
Confidence 0 0000000 00000 00111111111111000000 00001111111111
Q ss_pred hHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 883 IWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 883 ~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
+...++..++.+.+||.+||++||++||||+|+|+||||++...
T Consensus 327 ~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~ 370 (432)
T 3n9x_A 327 LKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRK 370 (432)
T ss_dssp HHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccC
Confidence 11123445666788999999999999999999999999987544
No 96
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.4e-40 Score=358.37 Aligned_cols=253 Identities=22% Similarity=0.310 Sum_probs=184.8
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
++|++.+.||+|+||+||+|+.. +++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999964 789999999875432 22457889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+ +++|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+||++++++.+||+|||+++.....
T Consensus 93 e~~-~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~- 165 (275)
T 2eue_A 93 EYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG- 165 (275)
T ss_dssp ECC-CEEHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred hhc-CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---CeeccCChHhEEECCCCCEEEeecccceeccCc-
Confidence 999 78898888654 35899999999999999999999999 999999999999999999999999999765322
Q ss_pred CCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||.........
T Consensus 166 -------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----------------- 221 (275)
T 2eue_A 166 -------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLF----------------- 221 (275)
T ss_dssp ----------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-----------------
T ss_pred -------ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHH-----------------
Confidence 11233468999999999988765 78999999999999999999999754321110
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
+.+.......| ...++...+++.+||+.||++|||++|+|+||||+.
T Consensus 222 -------------~~~~~~~~~~~--------------------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h~~f~~ 268 (275)
T 2eue_A 222 -------------KNISNGVYTLP--------------------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV 268 (275)
T ss_dssp -------------HHHHHTCCCCC--------------------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCHHHHT
T ss_pred -------------HHHHhCCCCCC--------------------ccCCHHHHHHHHHHhhcCHhHCCCHHHHhhCCeecc
Confidence 00000000001 011222346888899999999999999999999987
Q ss_pred CC
Q 002289 924 DV 925 (941)
Q Consensus 924 ~~ 925 (941)
+.
T Consensus 269 ~~ 270 (275)
T 2eue_A 269 DL 270 (275)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 97
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1e-39 Score=360.45 Aligned_cols=263 Identities=29% Similarity=0.465 Sum_probs=217.6
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccC
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 677 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 677 (941)
....++|.+.+.||+|+||.||+|.. .+++.||||+++.... ...+.+.+|++++++++||||+++++++.+.
T Consensus 19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 98 (314)
T 2ivs_A 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98 (314)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred ccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC
Confidence 34567899999999999999999985 2458899999976433 3346789999999999999999999999999
Q ss_pred CcEEEEEecCCCCCHHHHHhhcCC----------------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEecc
Q 002289 678 GEQMLVYEFMSNGTLRDQLSAKSK----------------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRD 735 (941)
Q Consensus 678 ~~~~LV~e~~~~gsL~~~l~~~~~----------------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~D 735 (941)
+..++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+++ |+|||
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~d 175 (314)
T 2ivs_A 99 GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRD 175 (314)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCC
T ss_pred CceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---Ccccc
Confidence 999999999999999999976432 34899999999999999999999999 99999
Q ss_pred CCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CC
Q 002289 736 IKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GM 814 (941)
Q Consensus 736 Lkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~ 814 (941)
|||+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+
T Consensus 176 ikp~NIli~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~ 250 (314)
T 2ivs_A 176 LAARNILVAEGRKMKISDFGLSRDVYEEDS-----YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG 250 (314)
T ss_dssp CSGGGEEEETTTEEEECCCTTCEECTTTSC-----EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred cchheEEEcCCCCEEEcccccccccccccc-----ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986543221 112233457788999999999999999999999999999999 99
Q ss_pred CCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 815 QPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 815 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.||........ . ..+..+.....+..++..+.+++..|++.+|.+||++.++++.|+++..
T Consensus 251 ~p~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 251 NPYPGIPPERL-F---------NLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp CSSTTCCGGGH-H---------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHH-H---------HHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 99975443111 1 1111222334556677889999999999999999999999999998764
No 98
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.9e-40 Score=373.05 Aligned_cols=276 Identities=22% Similarity=0.358 Sum_probs=206.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccC------C
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~------~ 678 (941)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467899999999999999999974 69999999986532 22346788999999999999999999998665 3
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||+ +++|.+++... .+++..+..++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 569999999 88999999753 4889999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ......
T Consensus 177 ~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-l~~i~~----- 240 (367)
T 1cm8_A 177 QADS----------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ-LKEIMK----- 240 (367)
T ss_dssp ECCS----------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHH-----
T ss_pred cccc----------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHH-----
Confidence 6432 1234568999999999987 7899999999999999999999999976544322 111110
Q ss_pred hhhcCCCCCCChHHHHH-----HHHHHHHhcccCCCC-CCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCC
Q 002289 838 SVIDGNMGSYPSECVEK-----FIKLALKCCQDETDA-RPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPS 911 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~-----l~~l~~~c~~~~p~~-RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~s 911 (941)
. .+..+.+.... ....+.. .|.. +.. +...++...+.+.+||.+||+.||++|+|
T Consensus 241 -~----~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~ll~~mL~~dP~~R~t 301 (367)
T 1cm8_A 241 -V----TGTPPAEFVQRLQSDEAKNYMKG----LPELEKKD----------FASILTNASPLAVNLLEKMLVLDAEQRVT 301 (367)
T ss_dssp -H----HCCCCHHHHHTCSCHHHHHHHHH----SCCCCCCC----------GGGTCTTCCHHHHHHHHHHSCSSTTTSCC
T ss_pred -h----cCCCCHHHHHHhhhHHHHHHHHh----CCCCCCCC----------HHHHCCCCCHHHHHHHHHHccCChhHCCC
Confidence 0 11122222211 1111111 1111 111 11223444556778999999999999999
Q ss_pred CccCCCCCCCCCCC
Q 002289 912 SSSMLKHPYVSSDV 925 (941)
Q Consensus 912 a~e~L~Hpwf~~~~ 925 (941)
++|+|+||||+...
T Consensus 302 ~~e~l~hp~f~~~~ 315 (367)
T 1cm8_A 302 AGEALAHPYFESLH 315 (367)
T ss_dssp HHHHHHSGGGTTTC
T ss_pred HHHHhcChHHHhhc
Confidence 99999999998643
No 99
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=7.6e-40 Score=363.94 Aligned_cols=278 Identities=22% Similarity=0.304 Sum_probs=215.5
Q ss_pred cccchHHHHHHhcCCCcc-ceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhc-CCCceeeee
Q 002289 597 RSFTYGEMALATNNFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLV 671 (941)
Q Consensus 597 ~~~~~~~~~~~~~~y~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~nIv~l~ 671 (941)
+...+.......++|.+. +.||+|+||+||+|... +++.||+|+++... ......+.+|+.+++.+ +||||++++
T Consensus 16 ~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~ 95 (327)
T 3lm5_A 16 ENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLH 95 (327)
T ss_dssp CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred hhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 344556667778888887 88999999999999975 68999999987532 22356789999999999 569999999
Q ss_pred eccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCc
Q 002289 672 GYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFT 748 (941)
Q Consensus 672 ~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~ 748 (941)
+++...+..++||||+++|+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++. ++.
T Consensus 96 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~ 172 (327)
T 3lm5_A 96 EVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGD 172 (327)
T ss_dssp EEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCC
T ss_pred EEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCc
Confidence 99999999999999999999999997665667999999999999999999999999 999999999999987 789
Q ss_pred EEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 002289 749 AKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVN 828 (941)
Q Consensus 749 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~ 828 (941)
+||+|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...........
T Consensus 173 ~kL~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~ 244 (327)
T 3lm5_A 173 IKIVDFGMSRKIGHA--------CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLN 244 (327)
T ss_dssp EEECCGGGCEEC-----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred EEEeeCccccccCCc--------cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHH
Confidence 999999999865422 112345689999999999999999999999999999999999999975443211111
Q ss_pred HHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCC
Q 002289 829 IAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEET 908 (941)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~ 908 (941)
+........+... ........++|.+||..||++
T Consensus 245 -----------------------------i~~~~~~~~~~~~-----------------~~~~~~~~~li~~~L~~dP~~ 278 (327)
T 3lm5_A 245 -----------------------------ISQVNVDYSEETF-----------------SSVSQLATDFIQSLLVKNPEK 278 (327)
T ss_dssp -----------------------------HHHTCCCCCTTTT-----------------TTSCHHHHHHHHHHSCSSGGG
T ss_pred -----------------------------HHhcccccCchhh-----------------cccCHHHHHHHHHHcCCChhh
Confidence 0000000000000 111222346888899999999
Q ss_pred CCCCccCCCCCCCCCCCCCCccc
Q 002289 909 PPSSSSMLKHPYVSSDVSGSNLV 931 (941)
Q Consensus 909 R~sa~e~L~Hpwf~~~~~~~~~~ 931 (941)
|||++|+|+||||++..+.....
T Consensus 279 Rpt~~~ll~h~~~~~~~~~~~~~ 301 (327)
T 3lm5_A 279 RPTAEICLSHSWLQQWDFENLFH 301 (327)
T ss_dssp SCCHHHHTTCGGGCCCCTTCC--
T ss_pred CcCHHHHhCCHhhcccccccccC
Confidence 99999999999998766554433
No 100
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.5e-39 Score=361.91 Aligned_cols=280 Identities=18% Similarity=0.321 Sum_probs=210.0
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeecccc--CCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE--EGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~--~~~~~LV 683 (941)
.++|++.+.||+|+||+||+|+. .+++.||||+++... .+.+.+|++++++++ ||||+++++++.. ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 46799999999999999999986 478999999987532 457899999999997 9999999999977 6678999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC-cEEEeeeccccccCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF-TAKVADFGLSRLAPV 762 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~-~~kl~DFGla~~~~~ 762 (941)
|||+++++|.+++.. +++..++.++.|++.||+|||+++ |+||||||+|||++.++ .+||+|||+++....
T Consensus 112 ~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~ 183 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 183 (330)
T ss_dssp EECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred EeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence 999999999999843 788899999999999999999999 99999999999999776 899999999986543
Q ss_pred CCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. ......||..|+|||++.+ ..++.++|||||||++|||++|+.||....+..+..........
T Consensus 184 ~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~------ 249 (330)
T 3nsz_A 184 GQ--------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLG------ 249 (330)
T ss_dssp TC--------CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHC------
T ss_pred CC--------ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcC------
Confidence 21 1233468899999999987 67899999999999999999999999766554333322111100
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH--HhHhhCC-----CCCCCCcccccccCCCCCCCCCCCcc
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE--SIWNMMP-----ESDTKTPEFINSEHTSKEETPPSSSS 914 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~--~~~~~~~-----~~~~~~~dll~~~L~~dP~~R~sa~e 914 (941)
...+.+.+.. ......|...+...... .+..... ...+.+.+||.+||..||++||||+|
T Consensus 250 ----------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e 316 (330)
T 3nsz_A 250 ----------TEDLYDYIDK---YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTARE 316 (330)
T ss_dssp ----------HHHHHHHHHH---TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred ----------CchhhhHHHH---hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHH
Confidence 0011111111 11111122211110000 0000000 12344567999999999999999999
Q ss_pred CCCCCCCCCCC
Q 002289 915 MLKHPYVSSDV 925 (941)
Q Consensus 915 ~L~Hpwf~~~~ 925 (941)
+|+||||++..
T Consensus 317 ~l~hp~f~~~~ 327 (330)
T 3nsz_A 317 AMEHPYFYTVV 327 (330)
T ss_dssp HHTSGGGTTCC
T ss_pred HhcCccHhhhc
Confidence 99999998754
No 101
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=6.2e-40 Score=364.84 Aligned_cols=262 Identities=21% Similarity=0.347 Sum_probs=198.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCC-------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------- 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~------- 678 (941)
.++|++.+.||+|+||.||+|++. +|+.||||+++.... ...+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 467889999999999999999976 799999999875433 34567999999999999999999999875432
Q ss_pred --------------------------------------------------cEEEEEecCCCCCHHHHHhhcCC-CCccHH
Q 002289 679 --------------------------------------------------EQMLVYEFMSNGTLRDQLSAKSK-EPLGFA 707 (941)
Q Consensus 679 --------------------------------------------------~~~LV~e~~~~gsL~~~l~~~~~-~~l~~~ 707 (941)
..++||||+++|+|.+++..... ...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 37999999999999999976533 345667
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCcc-----ccccccccccCCC
Q 002289 708 MRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIV-----PAHVSTVVKGTPG 782 (941)
Q Consensus 708 ~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~-----~~~~~~~~~gt~~ 782 (941)
.++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++........... .........||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 78999999999999999999 999999999999999999999999999876543211100 0112234569999
Q ss_pred cccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHh
Q 002289 783 YLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKC 862 (941)
Q Consensus 783 y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c 862 (941)
|+|||++.+..++.++|||||||++|||++|..|+..... .. ...... ..+...
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~---~~---------~~~~~~---~~~~~~----------- 295 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR---II---------TDVRNL---KFPLLF----------- 295 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH---HH---------HHHHTT---CCCHHH-----------
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH---HH---------HHhhcc---CCCccc-----------
Confidence 9999999999999999999999999999998665421100 00 000000 111100
Q ss_pred cccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 863 CQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 863 ~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
... .+...+++.+||..||++|||++|+|+||||++
T Consensus 296 -----------~~~--------------~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~ 331 (332)
T 3qd2_B 296 -----------TQK--------------YPQEHMMVQDMLSPSPTERPEATDIIENAIFEN 331 (332)
T ss_dssp -----------HHH--------------CHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred -----------ccC--------------ChhHHHHHHHHccCCCCcCCCHHHHhhchhhhc
Confidence 000 011136788889999999999999999999975
No 102
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.1e-40 Score=386.59 Aligned_cols=262 Identities=30% Similarity=0.470 Sum_probs=220.1
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCC-CcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
+++...++|++.+.||+|+||.||+|.+.. +..||||+++.... ..+.|.+|++++++++||||++++++|...+..+
T Consensus 214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 292 (495)
T 1opk_A 214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 292 (495)
T ss_dssp CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEE
Confidence 344456778899999999999999999764 88999999986433 3567999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++.......+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 293 lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred EEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceecc
Confidence 9999999999999998766677999999999999999999999999 9999999999999999999999999998754
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
... ........++..|+|||++.+..++.++|||||||++|||++ |+.||....... ... .+.
T Consensus 370 ~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~-~~~---------~~~ 433 (495)
T 1opk_A 370 GDT------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYE---------LLE 433 (495)
T ss_dssp TCC------EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-HHH---------HHH
T ss_pred CCc------eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH-HHH---------HHH
Confidence 321 111223446788999999999999999999999999999999 999997544211 111 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
.+.....+..++..+.+++..||+.+|.+||++.++++.|+.+.
T Consensus 434 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 434 KDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 12233456677888999999999999999999999999998764
No 103
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=4.3e-39 Score=354.50 Aligned_cols=266 Identities=26% Similarity=0.444 Sum_probs=211.1
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
..++|.+.++||+|+||+||+|.+. ..+|+|+++.... ...+.+.+|++++++++||||+++++++. .+..++||
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 110 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT 110 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred cccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEE
Confidence 4578999999999999999999864 3589998875332 33467899999999999999999999875 45689999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++++|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 111 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~ 186 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp ECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCSSSEEECTTSCEEECCCCSSCC-----
T ss_pred ecCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCChhhEEEcCCCCEEEccCCCceeccccc
Confidence 999999999999654 346899999999999999999999999 9999999999999999999999999997643211
Q ss_pred CCCccccccccccccCCCcccccccc---cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFL---THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
. ........||+.|+|||++. +..++.++|||||||++|||++|+.||.............. . ....
T Consensus 187 ~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~-~----~~~~ 256 (307)
T 3lb7_A 187 G-----SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVG-R----GYAS 256 (307)
T ss_dssp ------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH-H----TCCC
T ss_pred c-----cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHh-c----CCCC
Confidence 1 12233456999999999986 56789999999999999999999999976554332222111 1 1111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
.........++..+.+++..||+.+|++||++.++++.++.+...++.
T Consensus 257 ~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 257 PDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CCSTTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred cchhhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 222233456678899999999999999999999999999998877654
No 104
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1e-39 Score=354.67 Aligned_cols=259 Identities=27% Similarity=0.427 Sum_probs=204.1
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeCC----CcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
...++|++.+.||+|+||.||+|.+.. +..||+|+.+.... ...+.+.+|+.++++++||||+++++++. ++..
T Consensus 12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 90 (281)
T 1mp8_A 12 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 90 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred EehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence 346789999999999999999999642 56799999876433 33567899999999999999999999985 4678
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++|+|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYM 166 (281)
T ss_dssp EEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC-------
T ss_pred EEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECcccccccc
Confidence 9999999999999999754 345899999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||........ ...+
T Consensus 167 ~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~----------~~~i 230 (281)
T 1mp8_A 167 EDST------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV----------IGRI 230 (281)
T ss_dssp ------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH----------HHHH
T ss_pred Cccc------ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHH----------HHHH
Confidence 4322 111223446789999999999999999999999999999997 9999975443211 1112
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+.....+..++..+.+++..|++.+|++||++.++++.|+++..
T Consensus 231 ~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 231 ENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 2233344566677889999999999999999999999999998764
No 105
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=9e-40 Score=356.21 Aligned_cols=264 Identities=30% Similarity=0.461 Sum_probs=222.3
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
+++....++|++.+.||+|+||+||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 6 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 84 (288)
T 3kfa_A 6 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF 84 (288)
T ss_dssp CTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred hcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCE
Confidence 445556788999999999999999999976 48899999997643 3456789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++++|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||++...
T Consensus 85 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~ 161 (288)
T 3kfa_A 85 YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLM 161 (288)
T ss_dssp EEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTS
T ss_pred EEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceec
Confidence 99999999999999998877777999999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... ........+|+.|+|||++.+..++.++||||||+++|||++ |..||........ .. .+
T Consensus 162 ~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~-~~---------~~ 225 (288)
T 3kfa_A 162 TGDT------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV-YE---------LL 225 (288)
T ss_dssp CSSS------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-HH---------HH
T ss_pred cCCc------cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH-HH---------HH
Confidence 4322 122334457889999999999999999999999999999999 9999975432111 11 11
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
........+..++..+.+++..|+..+|.+||++.++++.|+.+..
T Consensus 226 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 226 EKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 1122233455667889999999999999999999999999988765
No 106
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.1e-39 Score=353.97 Aligned_cols=265 Identities=28% Similarity=0.452 Sum_probs=218.1
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
++....++|++.+.||+|+||.||+|...+++.||||+++... ...+.+.+|++++++++||||+++++++.. +..++
T Consensus 7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 84 (279)
T 1qpc_A 7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYI 84 (279)
T ss_dssp TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred hcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEE
Confidence 3444567899999999999999999998888899999997643 235678999999999999999999999864 56899
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++++|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||++++++.+||+|||+++....
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 161 (279)
T 1qpc_A 85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIED 161 (279)
T ss_dssp EEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence 999999999999996543335899999999999999999999999 99999999999999999999999999987643
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. ........++..|+|||.+.+..++.++||||||+++|||++ |+.||....... ... .+..
T Consensus 162 ~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-~~~---------~~~~ 225 (279)
T 1qpc_A 162 NE------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE-VIQ---------NLER 225 (279)
T ss_dssp SC------EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHH---------HHHT
T ss_pred cc------cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH-HHH---------HHhc
Confidence 22 111233456789999999998899999999999999999999 999997544321 111 1111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
+.....+..++..+.+++..|++.+|++||++.++++.|+.+.....
T Consensus 226 ~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 272 (279)
T 1qpc_A 226 GYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272 (279)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred ccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence 22233455667889999999999999999999999999999876543
No 107
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.4e-39 Score=353.90 Aligned_cols=260 Identities=23% Similarity=0.360 Sum_probs=207.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 578999999999999999999975 689999999875332 23467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc---EEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT---AKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~---~kl~DFGla~~~~ 761 (941)
||+++++|.+.+.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++. +||+|||++....
T Consensus 85 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 159 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159 (284)
T ss_dssp CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence 9999999999887653 4889999999999999999999999 999999999999986655 9999999997654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...........
T Consensus 160 ~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~------------- 218 (284)
T 3kk8_A 160 DSE--------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQ------------- 218 (284)
T ss_dssp SSC--------BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH-------------
T ss_pred cCc--------cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHH-------------
Confidence 321 12345689999999999999999999999999999999999999975443111000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
+............ ....+...+|+.+||..||++|||++|+|+||||
T Consensus 219 ----------------~~~~~~~~~~~~~-----------------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~ 265 (284)
T 3kk8_A 219 ----------------IKAGAYDYPSPEW-----------------DTVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 265 (284)
T ss_dssp ----------------HHHTCCCCCTTTT-----------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHH
T ss_pred ----------------HHhccccCCchhh-----------------cccCHHHHHHHHHHcccChhhCCCHHHHhcCccc
Confidence 0000000000000 0111223468888999999999999999999999
Q ss_pred CCCCC
Q 002289 922 SSDVS 926 (941)
Q Consensus 922 ~~~~~ 926 (941)
+....
T Consensus 266 ~~~~~ 270 (284)
T 3kk8_A 266 CNRER 270 (284)
T ss_dssp HSCCC
T ss_pred cCChh
Confidence 77544
No 108
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.1e-39 Score=366.56 Aligned_cols=296 Identities=23% Similarity=0.310 Sum_probs=213.7
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeecccc--------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDE-------- 676 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-------- 676 (941)
.++|++.+.||+|+||+||+|+. .+|+.||||++...... ....+.+|+++++.++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 36899999999999999999997 47899999998654322 24578899999999999999999999866
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecc
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGL 756 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGl 756 (941)
.+..++||||++ |+|.+.+.... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 96 KGSIYLVFDFCE-HDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp -CEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CceEEEEEeccC-CCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchh
Confidence 456899999996 58888775443 35899999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhcc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSM 835 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~ 835 (941)
|+........ .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||..............
T Consensus 171 a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~---- 243 (351)
T 3mi9_A 171 ARAFSLAKNS---QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQ---- 243 (351)
T ss_dssp CEECCCCSSS---SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH----
T ss_pred cccccccccc---cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH----
Confidence 9876432211 1222344568999999999986 4589999999999999999999999976543222111110
Q ss_pred chhhhcCCCCC-CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002289 836 MFSVIDGNMGS-YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSS 914 (941)
Q Consensus 836 ~~~~~~~~~~~-~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e 914 (941)
........ .+...... .. .-+......++...+.+.... .++.+.+||.+||+.||++|||++|
T Consensus 244 ---~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~L~~dP~~R~t~~e 308 (351)
T 3mi9_A 244 ---LCGSITPEVWPNVDNYE---LY-EKLELVKGQKRKVKDRLKAYV--------RDPYALDLIDKLLVLDPAQRIDSDD 308 (351)
T ss_dssp ---HHCCCCTTTSTTGGGCG---GG-TSSCCCSSCCCCHHHHHHHHH--------CCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred ---HhCCCChhhccccccch---hh-cccccccccccCHHHHhhhcc--------CChHHHHHHHHHhcCChhhCCCHHH
Confidence 00000000 00000000 00 001111122223322221111 1344568999999999999999999
Q ss_pred CCCCCCCCCCCCCCcc
Q 002289 915 MLKHPYVSSDVSGSNL 930 (941)
Q Consensus 915 ~L~Hpwf~~~~~~~~~ 930 (941)
+|+||||.++...+.+
T Consensus 309 ~l~hp~f~~~~~~~~~ 324 (351)
T 3mi9_A 309 ALNHDFFWSDPMPSDL 324 (351)
T ss_dssp HHTSGGGGSSSCCCCS
T ss_pred HhCCCCcCCCCCcccc
Confidence 9999999886665443
No 109
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-40 Score=369.97 Aligned_cols=260 Identities=27% Similarity=0.434 Sum_probs=214.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||+||+|++. +++.||||+++... ......+.+|+.++++++||||+++++++...+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 467889999999999999999953 46789999997543 33456789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcC-----CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC---cEEEe
Q 002289 681 MLVYEFMSNGTLRDQLSAKS-----KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF---TAKVA 752 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~-----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~---~~kl~ 752 (941)
++||||+++|+|.+++.... ...+++..++.++.||++||+|||+++ |+||||||+|||++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999997643 245899999999999999999999999 99999999999999554 59999
Q ss_pred eeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHH
Q 002289 753 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAY 831 (941)
Q Consensus 753 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~ 831 (941)
|||+|+....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...... +...
T Consensus 227 DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~-~~~~--- 297 (367)
T 3l9p_A 227 DFGMARDIYRAGY-----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLE--- 297 (367)
T ss_dssp CCHHHHHHHHHSS-----CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHH---
T ss_pred CCccccccccccc-----cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHH---
Confidence 9999975422111 112234457899999999999999999999999999999998 99999765432 1111
Q ss_pred hhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 832 QSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.+..+.....+..++..+.+++..||+.+|.+||++.++++.|+.+..
T Consensus 298 ------~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 298 ------FVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp ------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ------HHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 122233344556677889999999999999999999999999988765
No 110
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=352.58 Aligned_cols=262 Identities=27% Similarity=0.452 Sum_probs=207.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEecC
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 687 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~~ 687 (941)
.++|++.+.||+|+||+||+|++. ++.||||++... ...+.+.+|++++++++||||+++++++.+ ..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence 357888999999999999999984 788999998753 335678999999999999999999999874 479999999
Q ss_pred CCCCHHHHHhhcCC-CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc-EEEeeeccccccCCCCC
Q 002289 688 SNGTLRDQLSAKSK-EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT-AKVADFGLSRLAPVPDI 765 (941)
Q Consensus 688 ~~gsL~~~l~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~-~kl~DFGla~~~~~~~~ 765 (941)
++|+|.+++..... ..+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||++......
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 99999999976543 24788999999999999999999932223999999999999998886 799999999754321
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||........... .....+...
T Consensus 160 --------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~--------~~~~~~~~~ 223 (307)
T 2eva_A 160 --------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIM--------WAVHNGTRP 223 (307)
T ss_dssp -------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHH--------HHHHTTCCC
T ss_pred --------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHH--------HHHhcCCCC
Confidence 1234589999999999999999999999999999999999999975432211111 111222333
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCC
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDT 892 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~ 892 (941)
..+..++..+.+++.+|++.+|++||++.++++.|+.+...++..+.
T Consensus 224 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~ 270 (307)
T 2eva_A 224 PLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADE 270 (307)
T ss_dssp CCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTTS
T ss_pred CcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCCC
Confidence 44555667899999999999999999999999999999887765543
No 111
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=4.3e-39 Score=358.34 Aligned_cols=269 Identities=17% Similarity=0.244 Sum_probs=215.0
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||+||+|+. .+|+.||||++..... .+.+.+|+++++++ +|+||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46789999999999999999996 4789999999875432 34688999999999 99999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc-----EEEeeecccccc
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT-----AKVADFGLSRLA 760 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~-----~kl~DFGla~~~ 760 (941)
|+ +++|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+|||++.++. +||+|||+++..
T Consensus 86 ~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~ 160 (330)
T 2izr_A 86 LL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY 160 (330)
T ss_dssp CC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred eC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence 99 99999999764 346999999999999999999999999 999999999999998887 999999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc--hhHHHHHHHHhhccchh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK--NIVREVNIAYQSSMMFS 838 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~--~~~~~~~~~~~~~~~~~ 838 (941)
.........+........||+.|+|||++.+..++.++|||||||++|||++|+.||.... ...+.......... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~-~~ 239 (330)
T 2izr_A 161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKR-AT 239 (330)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHH-HS
T ss_pred ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhc-cC
Confidence 5433222222223355679999999999999999999999999999999999999997532 22221111110000 00
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
.. ......++ ++.+++..||+.+|.+||++.++.+.|+++......
T Consensus 240 ~~----~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~ 285 (330)
T 2izr_A 240 PI----EVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGY 285 (330)
T ss_dssp CH----HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred CH----HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 00 00011133 899999999999999999999999999988776543
No 112
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=5.7e-39 Score=351.59 Aligned_cols=270 Identities=19% Similarity=0.252 Sum_probs=216.6
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ..+.+.+|+++++.+ +|+|++++++++......++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999996 578999999987533 335688999999999 79999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc-----EEEeeecccccc
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT-----AKVADFGLSRLA 760 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~-----~kl~DFGla~~~ 760 (941)
|+ +++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|||+++..
T Consensus 87 ~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~ 161 (298)
T 1csn_A 87 LL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 161 (298)
T ss_dssp CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred ec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence 99 999999997643 35899999999999999999999999 999999999999987776 999999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch--hHHHHHHHHhhccchh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN--IVREVNIAYQSSMMFS 838 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~ 838 (941)
.........+........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ........... .
T Consensus 162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~--- 237 (298)
T 1csn_A 162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK-K--- 237 (298)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHH-H---
T ss_pred ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhh-c---
Confidence 54432222222234556799999999999999999999999999999999999999976332 11111111000 0
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
...........++..+.+++..||+.+|++||++.++++.|+++.+....
T Consensus 238 -~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 238 -QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp -HHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -cCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 00000011223457889999999999999999999999999998876544
No 113
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.5e-39 Score=350.17 Aligned_cols=258 Identities=29% Similarity=0.479 Sum_probs=216.0
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEec
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 686 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~ 686 (941)
..++|++.+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 3567889999999999999999998889999999986443 346789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCC
Q 002289 687 MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 687 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 85 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-- 158 (267)
T 3t9t_A 85 MEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-- 158 (267)
T ss_dssp CTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH--
T ss_pred CCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEccccccccccccc--
Confidence 99999999997643 45889999999999999999999999 9999999999999999999999999998653211
Q ss_pred CccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNMG 845 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (941)
........++..|+|||++.+..++.++||||+|+++|||++ |+.||....... ... .+..+...
T Consensus 159 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-~~~---------~i~~~~~~ 224 (267)
T 3t9t_A 159 ----YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE-VVE---------DISTGFRL 224 (267)
T ss_dssp ----HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHH---------HHHTTCCC
T ss_pred ----ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH-HHH---------HHhcCCcC
Confidence 112233456788999999999999999999999999999999 899997644321 111 11122223
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+..++..+.+++..|++.+|.+||++.++++.|+++.+
T Consensus 225 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 225 YKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 3445566789999999999999999999999999998764
No 114
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=3.9e-39 Score=347.54 Aligned_cols=254 Identities=20% Similarity=0.354 Sum_probs=211.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccC--CcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~--~~~~LV 683 (941)
.++|++.+.||+|+||+||+|+++ ++.||||+++... ....+.+.+|++++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 457888999999999999999984 8899999987643 23346799999999999999999999999776 788999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.......+++..++.++.|+++||+|||+++ ++|+||||||+||+++.++.++|+|||.+....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~-- 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSFQ-- 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS--
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeeec--
Confidence 99999999999998766667999999999999999999999865 459999999999999999999999998875422
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCc---hhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTD---KSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.....||+.|+|||++.+..++. ++|||||||++|||++|+.||............ ..
T Consensus 165 ----------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~---------~~ 225 (271)
T 3kmu_A 165 ----------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKV---------AL 225 (271)
T ss_dssp ----------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHH---------HH
T ss_pred ----------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHH---------Hh
Confidence 12345789999999998765544 799999999999999999999765442221111 11
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
.......+..++..+.+++..||+.+|++||++.++++.|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 226 EGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 22233456667788999999999999999999999999998864
No 115
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=3.7e-39 Score=348.09 Aligned_cols=253 Identities=32% Similarity=0.510 Sum_probs=201.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch----hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ----GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|.+. ++.||||+++..... ..+.+.+|+++++.++||||+++++++...+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 467889999999999999999974 889999998753322 235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC--------CCcEEEeeec
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH--------KFTAKVADFG 755 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~--------~~~~kl~DFG 755 (941)
|||+++++|.+++.. ..+++..++.++.|+++||+|||+++..+|+||||||+||+++. ++.+||+|||
T Consensus 85 ~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg 161 (271)
T 3dtc_A 85 MEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161 (271)
T ss_dssp EECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred EEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence 999999999999853 35899999999999999999999988666899999999999986 7789999999
Q ss_pred cccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhcc
Q 002289 756 LSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSM 835 (941)
Q Consensus 756 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~ 835 (941)
+++..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||............
T Consensus 162 ~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~------ 226 (271)
T 3dtc_A 162 LAREWHRT---------TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGV------ 226 (271)
T ss_dssp C----------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHH------
T ss_pred cccccccc---------cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhh------
Confidence 99765322 122346899999999999999999999999999999999999999765542221111
Q ss_pred chhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 002289 836 MFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELES 882 (941)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~ 882 (941)
.........+..++..+.+++..|++.+|.+||++.+++++|++
T Consensus 227 ---~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 227 ---AMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp ---HTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred ---hcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 11112233556677889999999999999999999999999875
No 116
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=361.25 Aligned_cols=265 Identities=28% Similarity=0.418 Sum_probs=202.6
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCC-C---cEEEEEEeccC--CchhhHhHHHHHHHHHhcCCCceeeeeecccc
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPD-G---TVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 676 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 676 (941)
++....++|++.+.||+|+||+||+|.+.. + ..||||+++.. .....+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 96 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR 96 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence 344456789999999999999999999653 3 37999998764 23345679999999999999999999999977
Q ss_pred CCcE------EEEEecCCCCCHHHHHhhcC----CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC
Q 002289 677 EGEQ------MLVYEFMSNGTLRDQLSAKS----KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK 746 (941)
Q Consensus 677 ~~~~------~LV~e~~~~gsL~~~l~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~ 746 (941)
.+.. ++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.+
T Consensus 97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~ 173 (323)
T 3qup_A 97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAED 173 (323)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTT
T ss_pred cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCC
Confidence 6655 99999999999999986432 235899999999999999999999999 9999999999999999
Q ss_pred CcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHH
Q 002289 747 FTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVR 825 (941)
Q Consensus 747 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~ 825 (941)
+.+||+|||+++....... ........+++.|+|||.+.+..++.++|||||||++|||++ |+.||........
T Consensus 174 ~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~ 248 (323)
T 3qup_A 174 MTVCVADFGLSRKIYSGDY-----YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI 248 (323)
T ss_dssp SCEEECCCCC----------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred CCEEEeecccccccccccc-----ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH
Confidence 9999999999986543221 112233456789999999999999999999999999999999 8999976543221
Q ss_pred HHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 826 EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
. ..+..+.....+..++..+.+++.+|++.+|++||++.++++.++++..
T Consensus 249 ~----------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~ 298 (323)
T 3qup_A 249 Y----------NYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILG 298 (323)
T ss_dssp H----------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred H----------HHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 1 1222333344566677889999999999999999999999999998755
No 117
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.5e-40 Score=373.01 Aligned_cols=296 Identities=20% Similarity=0.322 Sum_probs=212.9
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||+||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 467899999999999999999975 689999999886532 335678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
|+++++|.+++.... .+++..+..++.|++.||+|||+. + |+||||||+||+++.++.+||+|||+++....
T Consensus 112 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-- 184 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-- 184 (360)
T ss_dssp CCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHH--
T ss_pred CCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCccccc--
Confidence 999999999997654 488999999999999999999985 8 99999999999999999999999999865421
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..... ...+..
T Consensus 185 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~-----~~~~~~ 250 (360)
T 3eqc_A 185 -------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELE--LMFGC-----QVEGDA 250 (360)
T ss_dssp -------HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHH--HHHC------------
T ss_pred -------ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHhcc-----cccccC
Confidence 1223456899999999999999999999999999999999999999765432111 11000 000000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh-CC--CCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM-MP--ESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~-~~--~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
...+.... ...... .-+..+........++.+.+...... .+ ..+....+||.+||+.||++|||++|+|+||||
T Consensus 251 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 328 (360)
T 3eqc_A 251 AETPPRPR-TPGRPL-NKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 328 (360)
T ss_dssp -------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHH
T ss_pred CCCCCCcc-cCCCcc-cccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHh
Confidence 00000000 000000 00111111222333333333221110 00 012235689999999999999999999999999
Q ss_pred CCCCC
Q 002289 922 SSDVS 926 (941)
Q Consensus 922 ~~~~~ 926 (941)
+....
T Consensus 329 ~~~~~ 333 (360)
T 3eqc_A 329 KRSDA 333 (360)
T ss_dssp HHHHH
T ss_pred hcchH
Confidence 76443
No 118
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.9e-40 Score=369.31 Aligned_cols=284 Identities=22% Similarity=0.352 Sum_probs=203.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchh-----hHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-----EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~-----~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
..++|++.+.||+|+||.||+|++. +|+.||||++....... .+.+.+|++++++++||||+++++++...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 4578999999999999999999975 68999999987532211 24688999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++ +|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 88 ~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp EEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred EEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 999999975 899988654 345888899999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... .......||+.|+|||++.+. .++.++|||||||++|||++|..||........ ....+....
T Consensus 163 ~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~-~~~i~~~~~---- 230 (346)
T 1ua2_A 163 GSPN-------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ-LTRIFETLG---- 230 (346)
T ss_dssp TSCC-------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHC----
T ss_pred cCCc-------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHcC----
Confidence 4321 122345689999999999764 589999999999999999999988876543222 111111000
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCC
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHP 919 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hp 919 (941)
.......+..+ .+. -......+|... +............+||.+||..||++|||++|+|+||
T Consensus 231 -~~~~~~~~~~~-----~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~ 293 (346)
T 1ua2_A 231 -TPTEEQWPDMC-----SLP---DYVTFKSFPGIP--------LHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK 293 (346)
T ss_dssp -CCCTTTSSSTT-----SST---TCCCCCCCCCCC--------HHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred -CCChhhhhhhc-----cCc---ccccccccCCCC--------hHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence 00000000000 000 000000111100 0111233344566899999999999999999999999
Q ss_pred CCCCC
Q 002289 920 YVSSD 924 (941)
Q Consensus 920 wf~~~ 924 (941)
||+..
T Consensus 294 ~f~~~ 298 (346)
T 1ua2_A 294 YFSNR 298 (346)
T ss_dssp GGTSS
T ss_pred hhhcC
Confidence 99764
No 119
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=4e-40 Score=367.99 Aligned_cols=258 Identities=21% Similarity=0.347 Sum_probs=201.2
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
..++|++.+.||+|+||+||+|..+ +|+.||||++..... ...+|++++.++ +||||+++++++.+.+..++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 3567999999999999999999975 689999999975432 356788888888 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC----CcEEEeeecccccc
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK----FTAKVADFGLSRLA 760 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~----~~~kl~DFGla~~~ 760 (941)
||+++|+|.+++.... .+++..+..++.||+.||+|||+++ |+||||||+|||+.++ +.+||+|||+++..
T Consensus 96 E~~~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK--FFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp CCCCSCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 9999999999996543 5899999999999999999999999 9999999999998543 35999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 171 ~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---------------- 227 (342)
T 2qr7_A 171 RAEN-------GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT---------------- 227 (342)
T ss_dssp BCTT-------CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC----------------
T ss_pred cCCC-------CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC----------------
Confidence 4321 12234568999999999998889999999999999999999999996432100
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPY 920 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpw 920 (941)
..++.+.+...-...+.. ..+...+.+.+||.+||..||++|||++|+++|||
T Consensus 228 -----------~~~~~~~i~~~~~~~~~~----------------~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~ 280 (342)
T 2qr7_A 228 -----------PEEILARIGSGKFSLSGG----------------YWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPW 280 (342)
T ss_dssp -----------HHHHHHHHHHCCCCCCST----------------TTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHH
T ss_pred -----------HHHHHHHHccCCcccCcc----------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCe
Confidence 000111111100000000 00112233457888999999999999999999999
Q ss_pred CCC
Q 002289 921 VSS 923 (941)
Q Consensus 921 f~~ 923 (941)
|..
T Consensus 281 ~~~ 283 (342)
T 2qr7_A 281 IVH 283 (342)
T ss_dssp HHT
T ss_pred ecC
Confidence 954
No 120
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=4.7e-39 Score=354.91 Aligned_cols=267 Identities=24% Similarity=0.393 Sum_probs=218.9
Q ss_pred HHHHhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCCc-hhhHhHHHHHHHHHhc-CCCceeeeeeccc
Q 002289 604 MALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCD 675 (941)
Q Consensus 604 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~ 675 (941)
+....++|++.+.||+|+||+||+|.+ .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~ 97 (313)
T 1t46_A 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97 (313)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence 334567899999999999999999984 3568999999986443 3356789999999999 9999999999999
Q ss_pred cCCcEEEEEecCCCCCHHHHHhhcCC----------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCC
Q 002289 676 EEGEQMLVYEFMSNGTLRDQLSAKSK----------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKAS 739 (941)
Q Consensus 676 ~~~~~~LV~e~~~~gsL~~~l~~~~~----------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~ 739 (941)
..+..++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+++ |+||||||+
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~ 174 (313)
T 1t46_A 98 IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAAR 174 (313)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGG
T ss_pred cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccc
Confidence 99999999999999999999976542 25899999999999999999999999 999999999
Q ss_pred cEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCC
Q 002289 740 NILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPIS 818 (941)
Q Consensus 740 NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~ 818 (941)
||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.
T Consensus 175 Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 249 (313)
T 1t46_A 175 NILLTHGRITKICDFGLARDIKNDSN-----YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP 249 (313)
T ss_dssp GEEEETTTEEEECCCGGGSCTTSCTT-----SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred eEEEcCCCCEEEcccccccccccccc-----ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999986643321 112233457789999999999999999999999999999999 999997
Q ss_pred CCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 819 HGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
............ . .......+..++..+.+++.+|++.+|.+||++.++++.|+++....
T Consensus 250 ~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 309 (313)
T 1t46_A 250 GMPVDSKFYKMI-K--------EGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES 309 (313)
T ss_dssp TCCSSHHHHHHH-H--------HTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHh-c--------cCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence 644322211111 1 11112234556678999999999999999999999999999887653
No 121
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.4e-39 Score=394.68 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=212.0
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 681 (941)
..++|++.+.||+|+||.||+|+.. +++.||||+++.... ...+.+..|.+++..+ +|++|+++++++.+.+..+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999975 689999999875321 2235678899999987 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.++++... .+++..++.++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+...
T Consensus 419 lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 9999999999999997654 4899999999999999999999999 9999999999999999999999999998543
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... +... .+..
T Consensus 494 ~~-------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~-~~~~---------~i~~ 556 (674)
T 3pfq_A 494 WD-------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-ELFQ---------SIME 556 (674)
T ss_dssp CT-------TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHH---------HHHS
T ss_pred cC-------CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH-HHHH---------HHHh
Confidence 22 12234567999999999999999999999999999999999999999754321 1111 0111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCC-----ccCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSS-----SSML 916 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa-----~e~L 916 (941)
....+|... .+++.+||.+||+.||++|+++ +|++
T Consensus 557 -~~~~~p~~~---------------------------------------s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~ 596 (674)
T 3pfq_A 557 -HNVAYPKSM---------------------------------------SKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596 (674)
T ss_dssp -SCCCCCTTS---------------------------------------CHHHHHHHHHHSCSSSTTCTTCSTTHHHHHH
T ss_pred -CCCCCCccC---------------------------------------CHHHHHHHHHHccCCHHHCCCCCCCcHHHHh
Confidence 111122211 2233467777788888888877 7888
Q ss_pred CCCCCCCCCCCCccccccccccCC
Q 002289 917 KHPYVSSDVSGSNLVSGVIPTITP 940 (941)
Q Consensus 917 ~Hpwf~~~~~~~~~~~~~~~~~~~ 940 (941)
+||||+...+..-.-..+.|++.|
T Consensus 597 ~h~ff~~i~w~~l~~~~~~pp~~p 620 (674)
T 3pfq_A 597 EHAFFRYIDWEKLERKEIQPPYKP 620 (674)
T ss_dssp SSGGGSSCCHHHHTTTCSCCSCCC
T ss_pred cCccccCCCHHHHHhCCCCCCCCC
Confidence 888887755433333334455554
No 122
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=8e-39 Score=349.96 Aligned_cols=257 Identities=21% Similarity=0.338 Sum_probs=207.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467889999999999999999976 58899999986532 23346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp EECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 99999999999986643 5889999999999999999999999 999999999999999999999999999865422
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
. .......||+.|+|||++.+..++.++||||||+++|||++|+.||........... +...
T Consensus 169 ~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~----------~~~~- 230 (294)
T 2rku_A 169 G-------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR----------IKKN- 230 (294)
T ss_dssp T-------CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH----------HHTT-
T ss_pred c-------cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH----------Hhhc-
Confidence 1 122345689999999999999999999999999999999999999975432111100 0000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
....+. ..++...+++.+||..||++|||++|+++||||.+
T Consensus 231 ~~~~~~---------------------------------------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~ 271 (294)
T 2rku_A 231 EYSIPK---------------------------------------HINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 271 (294)
T ss_dssp CCCCCT---------------------------------------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHT
T ss_pred cCCCcc---------------------------------------ccCHHHHHHHHHHcccChhhCcCHHHHhhChheec
Confidence 000110 01112235778889999999999999999999976
Q ss_pred CCC
Q 002289 924 DVS 926 (941)
Q Consensus 924 ~~~ 926 (941)
...
T Consensus 272 ~~~ 274 (294)
T 2rku_A 272 GYI 274 (294)
T ss_dssp SCC
T ss_pred CCc
Confidence 544
No 123
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-39 Score=354.96 Aligned_cols=257 Identities=25% Similarity=0.370 Sum_probs=200.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|.+.+.||+|+||+||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 467899999999999999999975 689999999875432 234678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhc--CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeecccccc
Q 002289 686 FMSNGTLRDQLSAK--SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLA 760 (941)
Q Consensus 686 ~~~~gsL~~~l~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~ 760 (941)
|+++|+|.+++... ....+++..++.++.|+++||+|||+++ |+||||||+||++ +.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999988643 2356899999999999999999999999 9999999999999 45678999999999765
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
... .......||+.|+|||++. ..++.++|||||||++|||++|+.||..............
T Consensus 178 ~~~--------~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~--------- 239 (285)
T 3is5_A 178 KSD--------EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATY--------- 239 (285)
T ss_dssp -----------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH---------
T ss_pred CCc--------ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhcc---------
Confidence 432 1223456899999999875 5689999999999999999999999975432111000000
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPY 920 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpw 920 (941)
.........++ ..+...+|+.+||..||++|||++|+|+|||
T Consensus 240 --------------------~~~~~~~~~~~------------------~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~ 281 (285)
T 3is5_A 240 --------------------KEPNYAVECRP------------------LTPQAVDLLKQMLTKDPERRPSAAQVLHHEW 281 (285)
T ss_dssp --------------------CCCCCCC--CC------------------CCHHHHHHHHHHTCSCTTTSCCHHHHHTSGG
T ss_pred --------------------CCcccccccCc------------------CCHHHHHHHHHHccCChhhCcCHHHHhcCHH
Confidence 00000000111 1122346888899999999999999999999
Q ss_pred CCC
Q 002289 921 VSS 923 (941)
Q Consensus 921 f~~ 923 (941)
|++
T Consensus 282 f~~ 284 (285)
T 3is5_A 282 FKQ 284 (285)
T ss_dssp GGC
T ss_pred hhc
Confidence 975
No 124
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.5e-39 Score=360.27 Aligned_cols=268 Identities=25% Similarity=0.388 Sum_probs=215.8
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCCc-hhhHhHHHHHHHHHhc-CCCceeeeeecc
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYC 674 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 674 (941)
++....++|++.+.||+|+||.||+|.+ .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 4555678999999999999999999995 2467899999975432 2346789999999999 899999999999
Q ss_pred ccCCcEEEEEecCCCCCHHHHHhhcCC---------------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEe
Q 002289 675 DEEGEQMLVYEFMSNGTLRDQLSAKSK---------------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFH 733 (941)
Q Consensus 675 ~~~~~~~LV~e~~~~gsL~~~l~~~~~---------------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH 733 (941)
...+..++||||+++|+|.+++..... ..+++..++.++.|++.||+|||+++ |+|
T Consensus 119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH 195 (344)
T 1rjb_A 119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVH 195 (344)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccc
Confidence 999999999999999999999976432 24789999999999999999999999 999
Q ss_pred ccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-
Q 002289 734 RDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT- 812 (941)
Q Consensus 734 ~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt- 812 (941)
|||||+||+++.++.+||+|||++........ ........||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 196 ~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~ 270 (344)
T 1rjb_A 196 RDLAARNVLVTHGKVVKICDFGLARDIMSDSN-----YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSL 270 (344)
T ss_dssp TTCSGGGEEEETTTEEEECCCGGGSCGGGCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCChhhEEEcCCCcEEeCCCccCcccccCcc-----ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcC
Confidence 99999999999999999999999986543221 112334557889999999999999999999999999999998
Q ss_pred CCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 813 GMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 813 G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
|+.||............ . ..+.....+..++..+.+++..||+.+|.+||++.++++.|+.+....
T Consensus 271 g~~p~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 271 GVNPYPGIPVDANFYKL-I--------QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp SCCSSTTCCCSHHHHHH-H--------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred CCCCcccCCcHHHHHHH-H--------hcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 99999765432211111 1 111223345556788999999999999999999999999999876543
No 125
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.2e-40 Score=368.75 Aligned_cols=271 Identities=24% Similarity=0.314 Sum_probs=205.4
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccC-----CchhhHhHHHHHHHHHhcCCCceeeeeecccc
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG-----SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 676 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 676 (941)
++....++|++.+.||+|+||+||+|... +++.||+|++... .....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 45567889999999999999999999974 6889999998643 22334678999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhc--------------------------------------CCCCccHHHHHHHHHHHHH
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAK--------------------------------------SKEPLGFAMRLSIALGSSR 718 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~--------------------------------------~~~~l~~~~~~~i~~~ia~ 718 (941)
.+..++||||+++|+|.+++... ....+++..++.++.|+++
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998521 0223467888999999999
Q ss_pred HHHHhhcCCCCCeEeccCCCCcEEEcCCC--cEEEeeeccccccCCCCCCCccccccccccccCCCccccccccc--CCC
Q 002289 719 GILYLHTEADPPVFHRDIKASNILLDHKF--TAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT--HKL 794 (941)
Q Consensus 719 gL~yLH~~~~~~ivH~DLkp~NILl~~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~ 794 (941)
||+|||+++ |+||||||+||+++.++ .+||+|||+++........ .........||+.|+|||++.+ ..+
T Consensus 180 ~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~ 253 (345)
T 3hko_A 180 ALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG---EYYGMTTKAGTPYFVAPEVLNTTNESY 253 (345)
T ss_dssp HHHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------CCCGGGCCHHHHTCSSSCC
T ss_pred HHHHHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCcc---ccccccccCCCccccCchhhccCCCCC
Confidence 999999999 99999999999998776 8999999999865332111 0112344568999999999975 678
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHH
Q 002289 795 TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMS 874 (941)
Q Consensus 795 ~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~ 874 (941)
+.++|||||||++|||++|+.||........... +...... ...|..
T Consensus 254 ~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~----------~~~~~~~----------------------~~~~~~- 300 (345)
T 3hko_A 254 GPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQ----------VLNKKLC----------------------FENPNY- 300 (345)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH----------HHHCCCC----------------------TTSGGG-
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHH----------HHhcccc----------------------cCCccc-
Confidence 9999999999999999999999975443211110 0000000 000100
Q ss_pred HHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 875 EVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 875 ~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
....+...++|.+||..||++|||+.|+|+||||++-.
T Consensus 301 -------------~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~ 338 (345)
T 3hko_A 301 -------------NVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFS 338 (345)
T ss_dssp -------------GGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTS
T ss_pred -------------ccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccCh
Confidence 00122234678888999999999999999999997643
No 126
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4.2e-40 Score=371.55 Aligned_cols=277 Identities=21% Similarity=0.355 Sum_probs=195.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccC------C
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~------~ 678 (941)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 478999999999999999999964 68999999987532 23356788999999999999999999998643 5
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++|+||+ +++|.+++.. ..+++..++.++.||++||+|||+.+ |+||||||+|||++.++.+||+|||+++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC-----
T ss_pred eEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 679999999 7899998854 35899999999999999999999999 9999999999999999999999999997
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
.... ......||..|+|||++.+ ..++.++||||+||++|||++|+.||........ ......
T Consensus 181 ~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-l~~i~~----- 244 (367)
T 2fst_X 181 HTAD----------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ-LKLILR----- 244 (367)
T ss_dssp --------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHH-----
T ss_pred cccc----------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHH-----
Confidence 6432 1234568999999999987 6789999999999999999999999976544222 211111
Q ss_pred hhhcCCCCCCChHHHH-----HHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCC
Q 002289 838 SVIDGNMGSYPSECVE-----KFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSS 912 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~-----~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa 912 (941)
.+ +..+.+... .....+.. +...| +..+. ..++..++.+.+||.+||++||++|+|+
T Consensus 245 -~~----g~p~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----------~~~~~~~~~~~dLl~~mL~~dP~~R~t~ 306 (367)
T 2fst_X 245 -LV----GTPGAELLKKISSESARNYIQS-LTQMP--KMNFA----------NVFIGANPLAVDLLEKMLVLDSDKRITA 306 (367)
T ss_dssp -HH----CSCCHHHHTTCCCHHHHHHHHT-SCCCC--CCCHH----------HHTTTCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred -Hh----CCCCHHHHHHhhhHHHHHHHhc-cCCCC--CCCHH----------HHCCCCCHHHHHHHHHhCCCCcccCcCH
Confidence 00 111111111 11111111 11111 12222 1234455667899999999999999999
Q ss_pred ccCCCCCCCCCCC
Q 002289 913 SSMLKHPYVSSDV 925 (941)
Q Consensus 913 ~e~L~Hpwf~~~~ 925 (941)
+|+|+||||+...
T Consensus 307 ~e~L~hp~~~~~~ 319 (367)
T 2fst_X 307 AQALAHAYFAQYH 319 (367)
T ss_dssp HHHHTSGGGTTTC
T ss_pred HHHhcChhhhhcc
Confidence 9999999998643
No 127
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=376.61 Aligned_cols=295 Identities=24% Similarity=0.324 Sum_probs=194.3
Q ss_pred cCCCc-cceeeccCcEEEEEEEeC---CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecc--ccCCcEEE
Q 002289 609 NNFNS-STQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC--DEEGEQML 682 (941)
Q Consensus 609 ~~y~~-~~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~--~~~~~~~L 682 (941)
+.|++ .++||+|+||+||+|+.. +++.||||++..... ...+.+|++++++++||||+++++++ ......++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34555 458999999999999965 578999999975432 34688999999999999999999999 45678999
Q ss_pred EEecCCCCCHHHHHhhc-------CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE----cCCCcEEE
Q 002289 683 VYEFMSNGTLRDQLSAK-------SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL----DHKFTAKV 751 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~-------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl----~~~~~~kl 751 (941)
||||++ |+|.+++... ....+++..++.++.||+.||+|||+++ |+||||||+|||+ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999995 6888887532 2235899999999999999999999999 9999999999999 77889999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhH------
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIV------ 824 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~------ 824 (941)
+|||+|+....... .........||+.|+|||++.+. .++.++|||||||++|||++|+.||.......
T Consensus 174 ~Dfg~a~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~ 249 (405)
T 3rgf_A 174 ADMGFARLFNSPLK----PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPY 249 (405)
T ss_dssp CCTTCCC--------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCC
T ss_pred EECCCceecCCCCc----ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccc
Confidence 99999986643211 11223446789999999999874 58999999999999999999999996543210
Q ss_pred --HHHHHHHhhccchhhhcCCCCC-CCh-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccc
Q 002289 825 --REVNIAYQSSMMFSVIDGNMGS-YPS-ECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINS 900 (941)
Q Consensus 825 --~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~ 900 (941)
+.+...+ ..+...... .+. ........+.. .+...........+. ........++.+.+||.+
T Consensus 250 ~~~~l~~i~------~~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~Ll~~ 316 (405)
T 3rgf_A 250 HHDQLDRIF------NVMGFPADKDWEDIKKMPEHSTLMK-DFRRNTYTNCSLIKY------MEKHKVKPDSKAFHLLQK 316 (405)
T ss_dssp CHHHHHHHH------HHHCCCCTTTCGGGGGSTTHHHHHH-HCCGGGGTTCCHHHH------HHTTTCCTTSHHHHHHHH
T ss_pred hHHHHHHHH------HhhCCCChhhcchhhcCcchhhhhh-hccccCCCcchhhhh------HhhcCCCCCHHHHHHHHH
Confidence 1111000 000000000 000 00000000000 011111111111111 111223345667889999
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 901 EHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 901 ~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
||++||++||||+|+|+||||.....
T Consensus 317 ~L~~dP~~R~ta~e~L~hp~f~~~~~ 342 (405)
T 3rgf_A 317 LLTMDPIKRITSEQAMQDPYFLEDPL 342 (405)
T ss_dssp HSCSSGGGSCCHHHHHTSGGGTSSSC
T ss_pred HccCCcccCCCHHHHhcChhhccCCC
Confidence 99999999999999999999987543
No 128
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.1e-39 Score=356.58 Aligned_cols=277 Identities=27% Similarity=0.430 Sum_probs=214.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeCC-----CcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPD-----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
.++|++.+.||+|+||+||+|.+.. +..||||+++.... .....+.+|++++++++||||+++++++...+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 4567778999999999999998642 24699999976433 33457899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++...
T Consensus 123 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 198 (333)
T 1mqb_A 123 IITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLE 198 (333)
T ss_dssp EEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred EEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence 999999999999999754 345899999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
..... ........+|..|+|||++.+..++.++|||||||++|||++ |+.||....... .. ..+.
T Consensus 199 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~-~~---------~~~~ 264 (333)
T 1mqb_A 199 DDPEA----TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE-VM---------KAIN 264 (333)
T ss_dssp ----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HH---------HHHH
T ss_pred ccccc----ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH-HH---------HHHH
Confidence 32110 111223346788999999999999999999999999999999 999997544311 11 1122
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPP 910 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ 910 (941)
.+.....+..++..+.+++.+||+.+|.+||++.++++.|+.+.... +.+..+..++|..|+
T Consensus 265 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~--------~~~~~~~~~~p~~~~ 326 (333)
T 1mqb_A 265 DGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP--------DSLKTLADFDPRVSI 326 (333)
T ss_dssp TTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG--------GGGGSBCCC------
T ss_pred CCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc--------hhhhhhcCCCccchh
Confidence 22233445567788999999999999999999999999999887532 445566777776655
No 129
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.3e-39 Score=361.35 Aligned_cols=257 Identities=21% Similarity=0.340 Sum_probs=206.7
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|.+.+.||+|+||.||++.+. +++.||+|++.... ....+.+.+|+.+++.++|+||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 467888999999999999999975 58899999986532 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp ECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 99999999999987643 5889999999999999999999999 999999999999999999999999999865422
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
. .......||..|+|||++.+..++.++||||||+++|||++|+.||............ ...
T Consensus 195 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~----------~~~- 256 (335)
T 2owb_A 195 G-------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI----------KKN- 256 (335)
T ss_dssp T-------CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH----------HHT-
T ss_pred c-------ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHH----------hcC-
Confidence 1 1223456899999999999999999999999999999999999999754321111000 000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
....+. ..++...++|.+||..||++|||++|+++||||++
T Consensus 257 ~~~~~~---------------------------------------~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~ 297 (335)
T 2owb_A 257 EYSIPK---------------------------------------HINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 297 (335)
T ss_dssp CCCCCT---------------------------------------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHT
T ss_pred CCCCCc---------------------------------------cCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence 000110 01112235777888999999999999999999977
Q ss_pred CCC
Q 002289 924 DVS 926 (941)
Q Consensus 924 ~~~ 926 (941)
...
T Consensus 298 ~~~ 300 (335)
T 2owb_A 298 GYI 300 (335)
T ss_dssp SCC
T ss_pred CCc
Confidence 544
No 130
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.2e-40 Score=381.58 Aligned_cols=201 Identities=28% Similarity=0.433 Sum_probs=176.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|.+.+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|+++++.++||||+++++++...+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 357889999999999999999975 7999999998753221 235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 95 ~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 95 MEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp EECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred EeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999999654 35899999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||....
T Consensus 170 ~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 220 (476)
T 2y94_A 170 E--------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH 220 (476)
T ss_dssp C--------CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred c--------cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC
Confidence 1 2234569999999999998765 689999999999999999999997543
No 131
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=6.8e-40 Score=388.23 Aligned_cols=264 Identities=30% Similarity=0.466 Sum_probs=219.5
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++++...++|++.++||+|+||.||+|.+.++..||||+++.... ..+.|.+|+++|++++|+||+++++++.+ +..
T Consensus 259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~ 336 (535)
T 2h8h_A 259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI 336 (535)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccc
Confidence 3445556788999999999999999999998888899999986443 34679999999999999999999999876 678
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++|+|.+++.......+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++..
T Consensus 337 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 413 (535)
T 2h8h_A 337 YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLI 413 (535)
T ss_dssp EEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTC
T ss_pred eEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceec
Confidence 99999999999999997644455899999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... ........++..|+|||++.+..++.++|||||||++|||++ |+.||....... ... .+
T Consensus 414 ~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~-~~~---------~i 477 (535)
T 2h8h_A 414 EDNE------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE-VLD---------QV 477 (535)
T ss_dssp CCHH------HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH-HHH---------HH
T ss_pred CCCc------eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHH---------HH
Confidence 3211 111223446788999999999999999999999999999999 999997554321 111 11
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+.....+..++..+.+++..||+.+|++||++.++++.|+.+..
T Consensus 478 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~ 523 (535)
T 2h8h_A 478 ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 523 (535)
T ss_dssp HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhh
Confidence 2222334566777889999999999999999999999999998754
No 132
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=3.8e-39 Score=363.93 Aligned_cols=278 Identities=18% Similarity=0.199 Sum_probs=211.8
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCC------CcEEEEEEeccCCchhh-----------HhHHHHHHHHHhcCCCceee
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSLQGE-----------KEFLTEIQFLSRLHHRNLVS 669 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~nIv~ 669 (941)
..++|++.+.||+|+||+||+|.+.+ ++.||||++........ ..+..|+..++.++|+||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 35689999999999999999999754 47899999876442111 12345666777888999999
Q ss_pred eeeccccC----CcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-
Q 002289 670 LVGYCDEE----GEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD- 744 (941)
Q Consensus 670 l~~~~~~~----~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~- 744 (941)
+++++... ...++||||+ +++|.+++... ...+++..++.++.||+.||+|||+++ |+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEES
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEec
Confidence 99998654 4589999999 99999999764 346999999999999999999999999 99999999999999
Q ss_pred -CCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchh
Q 002289 745 -HKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNI 823 (941)
Q Consensus 745 -~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~ 823 (941)
.++.+||+|||+|+....................||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8899999999999876433221111112224456999999999999999999999999999999999999999743221
Q ss_pred HHH---HHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCC
Q 002289 824 VRE---VNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDT 892 (941)
Q Consensus 824 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~ 892 (941)
... ....+. .....+++..+. +..++..+.+++..||+.+|.+||++.++++.|+.+.........
T Consensus 268 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~ 336 (364)
T 3op5_A 268 PKYVRDSKIRYR-ENIASLMDKCFP--AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDD 336 (364)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHSC--TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhh-hhHHHHHHHhcc--cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 111 111111 112222222111 123356788999999999999999999999999998876654443
No 133
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=8.4e-40 Score=358.49 Aligned_cols=283 Identities=27% Similarity=0.420 Sum_probs=210.0
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
++|++.+.||+|+||+||+|+.. +|+.||||+++..... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57889999999999999999975 6899999998754322 23578899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|++ ++|.+++.......+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||.+.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~- 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV- 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS-
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc-
Confidence 996 69999998776567899999999999999999999999 9999999999999999999999999997653221
Q ss_pred CCccccccccccccCCCcccccccccCC-CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHK-LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......+|+.|+|||.+.+.. ++.++|||||||++|||++|+.||.......................
T Consensus 158 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~---- 227 (299)
T 2r3i_A 158 ------RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVV---- 227 (299)
T ss_dssp ------BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTT----
T ss_pred ------cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhh----
Confidence 1223346889999999998765 79999999999999999999999976554322111110000000000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+. +...+..++.+..... ..+....+..+....+||.+||..||++|||++|+|+||||++
T Consensus 228 --~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~hp~~~~ 289 (299)
T 2r3i_A 228 --WPG-------------VTSMPDYKPSFPKWAR--QDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQD 289 (299)
T ss_dssp --STT-------------GGGSTTCCTTSCCCCC--CCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTT
T ss_pred --hhH-------------hhcCcccchhhhcccc--hhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcChhhhc
Confidence 000 0001111111100000 0001112233445568999999999999999999999999986
No 134
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-39 Score=369.90 Aligned_cols=281 Identities=21% Similarity=0.331 Sum_probs=202.9
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecccc-------
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE------- 676 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~------- 676 (941)
....++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+|+++++.++||||+++++++..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999996 479999999986532 234579999999999999999999833
Q ss_pred -------------------------------CCcEEEEEecCCCCCHHHHHhh--cCCCCccHHHHHHHHHHHHHHHHHh
Q 002289 677 -------------------------------EGEQMLVYEFMSNGTLRDQLSA--KSKEPLGFAMRLSIALGSSRGILYL 723 (941)
Q Consensus 677 -------------------------------~~~~~LV~e~~~~gsL~~~l~~--~~~~~l~~~~~~~i~~~ia~gL~yL 723 (941)
....++||||++ |+|.+.+.. .....+++..++.++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334889999997 688887764 3345699999999999999999999
Q ss_pred hcCCCCCeEeccCCCCcEEEc-CCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhH
Q 002289 724 HTEADPPVFHRDIKASNILLD-HKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVY 801 (941)
Q Consensus 724 H~~~~~~ivH~DLkp~NILl~-~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVw 801 (941)
|+++ |+||||||+|||++ .++.+||+|||+|+...... ......||+.|+|||++.+. .++.++|||
T Consensus 158 H~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw 226 (383)
T 3eb0_A 158 HSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--------PSVAYICSRFYRAPELMLGATEYTPSIDLW 226 (383)
T ss_dssp HTTT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--------CCCCCCCCSSCCCHHHHTTCSSCCTHHHHH
T ss_pred HHCc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--------CCcCcccCCCccCHHHhcCCCCCCcchhhh
Confidence 9999 99999999999998 68999999999998653321 22345689999999998875 489999999
Q ss_pred HHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 002289 802 SLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 881 (941)
Q Consensus 802 SlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~ 881 (941)
|+||++|||++|+.||.............. . .+..+.+..... .-......-|.... .
T Consensus 227 slG~il~ell~g~~pf~~~~~~~~~~~i~~-------~----~g~p~~~~~~~~------~~~~~~~~~~~~~~-----~ 284 (383)
T 3eb0_A 227 SIGCVFGELILGKPLFSGETSIDQLVRIIQ-------I----MGTPTKEQMIRM------NPHYTEVRFPTLKA-----K 284 (383)
T ss_dssp HHHHHHHHHHHSSCSSCCSSHHHHHHHHHH-------H----HCCCCHHHHHHH------CTTC--CCCCCCCC-----C
T ss_pred hHHHHHHHHHhCCCCCCCCChHHHHHHHHH-------H----hCCCCHHHHHHh------CcccccccCCccCc-----c
Confidence 999999999999999976554322221110 0 011111111100 00000000000000 0
Q ss_pred HhHhhCC-CCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 882 SIWNMMP-ESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 882 ~~~~~~~-~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+...++ ...+.+.+||.+||++||++|+|+.|+|+||||+.
T Consensus 285 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~ 327 (383)
T 3eb0_A 285 DWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDH 327 (383)
T ss_dssp CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHH
T ss_pred cHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHH
Confidence 0111112 23344678999999999999999999999999964
No 135
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=9.9e-40 Score=372.86 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=162.6
Q ss_pred cCCCcc-ceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHh-cCCCceeeeeecccc----CCcEE
Q 002289 609 NNFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSR-LHHRNLVSLVGYCDE----EGEQM 681 (941)
Q Consensus 609 ~~y~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~nIv~l~~~~~~----~~~~~ 681 (941)
++|.+. +.||+|+||+||+|... +|+.||||+++. ...+.+|++++.+ .+||||+++++++.. .+..+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 68999999999999975 689999999864 2357788888744 589999999998864 56789
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEEeeecccc
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKVADFGLSR 758 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl~DFGla~ 758 (941)
+||||+++|+|.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999998766667999999999999999999999999 999999999999997 7899999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 213 ~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 266 (400)
T 1nxk_A 213 ETTSH--------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN 266 (400)
T ss_dssp ECC-------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred ccCCC--------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence 65321 1223456899999999999999999999999999999999999999754
No 136
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.1e-39 Score=360.12 Aligned_cols=258 Identities=26% Similarity=0.430 Sum_probs=207.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcE----EEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTV----VAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
.++|++.+.||+|+||+||+|.+. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++. .+..+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 457888999999999999999964 4443 7888875433 223456789999999999999999999986 46789
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 91 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccccC
Confidence 999999999999999654 345888999999999999999999999 9999999999999999999999999998764
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... ........||..|+|||++.+..++.++|||||||++|||++ |+.||........ .. .+.
T Consensus 167 ~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~-~~---------~~~ 231 (325)
T 3kex_A 167 PDDK-----QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV-PD---------LLE 231 (325)
T ss_dssp CCTT-----CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH-HH---------HHH
T ss_pred cccc-----cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH-HH---------HHH
Confidence 4321 122334567889999999999999999999999999999999 9999975432111 11 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.......+..++..+.+++.+||+.+|.+||++.++++.|+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 232 KGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp TTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred cCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 122233445566678899999999999999999999999988743
No 137
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.8e-40 Score=369.74 Aligned_cols=201 Identities=27% Similarity=0.353 Sum_probs=172.4
Q ss_pred hcCCCccceeeccCcEEEEEEEe----CCCcEEEEEEeccCCc----hhhHhHHHHHHHHHhc-CCCceeeeeeccccCC
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEG 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~ 678 (941)
.++|++.+.||+|+||+||+|+. .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 46789999999999999999997 3689999999875321 2345678899999999 6999999999999999
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||+++|+|.+++.... .+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 9999999999999999997654 4889999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc--CCCCchhHhHHHHHHHHHHHhCCCCCCC
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT--HKLTDKSDVYSLGVVFLELLTGMQPISH 819 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDVwSlG~ll~elltG~~Pf~~ 819 (941)
...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||..
T Consensus 208 ~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~ 264 (355)
T 1vzo_A 208 EFVADE------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV 264 (355)
T ss_dssp ECCGGG------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ecccCC------CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence 653211 122334579999999999986 3478999999999999999999999964
No 138
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.4e-39 Score=362.43 Aligned_cols=286 Identities=24% Similarity=0.364 Sum_probs=210.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 467889999999999999999975 5899999998654332 2456789999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 104 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp ECCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 9999999988875433 4899999999999999999999999 9999999999999999999999999997653321
Q ss_pred CCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.......||..|+|||++.+. .++.++||||+||++|||++|+.||................
T Consensus 179 -------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~---------- 241 (331)
T 4aaa_A 179 -------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCL---------- 241 (331)
T ss_dssp ------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH----------
T ss_pred -------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHh----------
Confidence 122345689999999999875 78999999999999999999999997665433222111100
Q ss_pred CCCCChHHHHHHHHHHHH--hcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALK--CCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~--c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
+..++.....+..-... ........+.... ...+...+...+|+.+||..||++|||++|+|+||||
T Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f 310 (331)
T 4aaa_A 242 -GNLIPRHQELFNKNPVFAGVRLPEIKEREPLE----------RRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFF 310 (331)
T ss_dssp -CSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHH----------HHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHH
T ss_pred -CCCChhhhhHhhhccccccccCccccccchhh----------hcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchh
Confidence 01111111111000000 0000001111111 1223344556689999999999999999999999999
Q ss_pred CCCCC
Q 002289 922 SSDVS 926 (941)
Q Consensus 922 ~~~~~ 926 (941)
+.+..
T Consensus 311 ~~~~~ 315 (331)
T 4aaa_A 311 QMDGF 315 (331)
T ss_dssp HGGGH
T ss_pred ccCCh
Confidence 87644
No 139
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=1.2e-39 Score=367.66 Aligned_cols=291 Identities=22% Similarity=0.280 Sum_probs=211.4
Q ss_pred chHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch-----------hhHhHHHHHHHHHhcCCCcee
Q 002289 600 TYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ-----------GEKEFLTEIQFLSRLHHRNLV 668 (941)
Q Consensus 600 ~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~nIv 668 (941)
...++....++|++.+.||+|+||.||+|...+|+.||||++...... ..+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 356778889999999999999999999999888999999988642221 126789999999999999999
Q ss_pred eeeeccc-----cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE
Q 002289 669 SLVGYCD-----EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL 743 (941)
Q Consensus 669 ~l~~~~~-----~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl 743 (941)
++++++. .....++||||++ |+|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~ 167 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNILL 167 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEE
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEEE
Confidence 9999983 3346899999996 7998888643 346899999999999999999999999 9999999999999
Q ss_pred cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 744 DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 744 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
+.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.....
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~ 239 (362)
T 3pg1_A 168 ADNNDITICDFNLAREDTAD--------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF 239 (362)
T ss_dssp CTTCCEEECCTTC-----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred cCCCCEEEEecCcccccccc--------cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH
Confidence 99999999999999754321 12234568899999999987 6789999999999999999999999976543
Q ss_pred hHHHHHHHHhhccchhhhcCCCCCCChHHH-----HHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCccc
Q 002289 823 IVREVNIAYQSSMMFSVIDGNMGSYPSECV-----EKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEF 897 (941)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dl 897 (941)
... ...... .. +..+.+.. ....+.........|..+ +....+..++...+|
T Consensus 240 ~~~-~~~i~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l 296 (362)
T 3pg1_A 240 YNQ-LNKIVE------VV----GTPKIEDVVMFSSPSARDYLRNSLSNVPARA------------WTAVVPTADPVALDL 296 (362)
T ss_dssp HHH-HHHHHH------HH----CCCCHHHHHHTSCHHHHHHTTTCCCCCCCCC------------HHHHSTTSCHHHHHH
T ss_pred HHH-HHHHHH------Hc----CCCChHHhhhccchhhhHHHHhhcccCChhh------------HHhhCCCCCHHHHHH
Confidence 221 111110 00 00111100 011111111111111111 111233445556789
Q ss_pred ccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 898 INSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 898 l~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
|.+||..||++|||++|+|+||||++...
T Consensus 297 i~~~L~~dP~~Rpt~~ell~hp~f~~~~~ 325 (362)
T 3pg1_A 297 IAKMLEFNPQRRISTEQALRHPYFESLFD 325 (362)
T ss_dssp HHHHTCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred HHHHhcCChhhCCCHHHHHcCchhhhccC
Confidence 99999999999999999999999987544
No 140
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=4.4e-39 Score=357.79 Aligned_cols=258 Identities=26% Similarity=0.431 Sum_probs=205.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCc----EEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
.++|++.+.||+|+||+||+|++. +++ .||+|.+.... ....+.+.+|++++++++||||+++++++... ..+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeE
Confidence 467888999999999999999964 444 36888876433 23456899999999999999999999999875 478
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+|+||+++|+|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+|+...
T Consensus 93 ~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 9999999999999997643 45899999999999999999999999 9999999999999999999999999998764
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... ........+|..|+|||++.+..++.++|||||||++|||++ |+.||.......- . ..+.
T Consensus 169 ~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~---------~~~~ 233 (327)
T 3poz_A 169 AEEK-----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-S---------SILE 233 (327)
T ss_dssp TTCC------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-H---------HHHH
T ss_pred CCcc-----cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH-H---------HHHH
Confidence 3321 112233456889999999999999999999999999999999 9999975433111 0 0111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.+.....+..++..+.+++.+||+.+|.+||++.++++.|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 234 KGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 222334556677889999999999999999999999999988754
No 141
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=349.88 Aligned_cols=257 Identities=27% Similarity=0.446 Sum_probs=184.1
Q ss_pred cCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
++|++.+.||+|+||.||+|+. .+|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 5788999999999999999997 47899999998643221 1357889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++.......
T Consensus 91 e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 91 EMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp ECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred ecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 999999999999754 346899999999999999999999999 9999999999999999999999999998654221
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|+|||.+.+..++.++||||||+++|||++|+.||........ ......
T Consensus 167 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----------~~~~~~--- 226 (278)
T 3cok_A 167 -------EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT----------LNKVVL--- 226 (278)
T ss_dssp --------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------------CCS---
T ss_pred -------CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----------HHHHhh---
Confidence 112335689999999999998999999999999999999999999965332100 000000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
.+. ..|. .......+++.+||..||++|||++|+++||||...
T Consensus 227 --------------------~~~-~~~~----------------~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~ 269 (278)
T 3cok_A 227 --------------------ADY-EMPS----------------FLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRN 269 (278)
T ss_dssp --------------------SCC-CCCT----------------TSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC--
T ss_pred --------------------ccc-CCcc----------------ccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCC
Confidence 000 0010 011222468888999999999999999999999875
Q ss_pred CC
Q 002289 925 VS 926 (941)
Q Consensus 925 ~~ 926 (941)
..
T Consensus 270 ~~ 271 (278)
T 3cok_A 270 SS 271 (278)
T ss_dssp --
T ss_pred CC
Confidence 43
No 142
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2.2e-39 Score=366.70 Aligned_cols=285 Identities=21% Similarity=0.321 Sum_probs=204.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccCC------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------ 678 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~------ 678 (941)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999965 68999999987532 233467889999999999999999999986654
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||++ |+|.+.+.. .+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred ceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 7899999996 588888852 3889999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||........+...
T Consensus 176 ~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i--------- 238 (371)
T 2xrw_A 176 TAGTS--------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKV--------- 238 (371)
T ss_dssp ----------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---------
T ss_pred ccccc--------cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---------
Confidence 65321 1223456899999999999999999999999999999999999999766543322211
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCC-CCCHHHHHHHHHHhHhhCCCC-------CCCCcccccccCCCCCCCCC
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDA-RPSMSEVMRELESIWNMMPES-------DTKTPEFINSEHTSKEETPP 910 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~-RPs~~~v~~~L~~~~~~~~~~-------~~~~~dll~~~L~~dP~~R~ 910 (941)
+ ...+....+....+...+.......|.. +.++.+.... . .++.. ...+.+||.+||..||++||
T Consensus 239 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~ 311 (371)
T 2xrw_A 239 -I-EQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD---V--LFPADSEHNKLKASQARDLLSKMLVIDASKRI 311 (371)
T ss_dssp -H-C-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCG---G--GSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSC
T ss_pred -H-HHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhccc---c--cCcccccccccccHHHHHHHHHHCcCChhhCC
Confidence 1 1122223333322222222222222221 1122211100 0 00000 12346899999999999999
Q ss_pred CCccCCCCCCCCCC
Q 002289 911 SSSSMLKHPYVSSD 924 (941)
Q Consensus 911 sa~e~L~Hpwf~~~ 924 (941)
|++|+|+||||+..
T Consensus 312 t~~e~l~hp~~~~~ 325 (371)
T 2xrw_A 312 SVDEALQHPYINVW 325 (371)
T ss_dssp CHHHHHHSHHHHTT
T ss_pred CHHHHhCCcchhhh
Confidence 99999999999753
No 143
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=5e-39 Score=352.61 Aligned_cols=256 Identities=23% Similarity=0.364 Sum_probs=202.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHh--cCCCceeeeeecccc----CCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDE----EGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~----~~~~~ 681 (941)
.++|++.+.||+|+||+||+|++ +++.||||++... ..+.+.+|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46899999999999999999998 6899999998642 34456677777766 799999999998643 35689
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhh--------cCCCCCeEeccCCCCcEEEcCCCcEEEee
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLH--------TEADPPVFHRDIKASNILLDHKFTAKVAD 753 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivH~DLkp~NILl~~~~~~kl~D 753 (941)
+||||+++|+|.++++. ..+++..++.++.|++.||+||| +.+ |+||||||+|||++.++.+||+|
T Consensus 83 lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~D 156 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIAD 156 (301)
T ss_dssp EEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECC
T ss_pred EehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEee
Confidence 99999999999999954 35899999999999999999999 777 99999999999999999999999
Q ss_pred eccccccCCCCCCCccccccccccccCCCcccccccccC------CCCchhHhHHHHHHHHHHHhC----------CCCC
Q 002289 754 FGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH------KLTDKSDVYSLGVVFLELLTG----------MQPI 817 (941)
Q Consensus 754 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDVwSlG~ll~elltG----------~~Pf 817 (941)
||+|+........ .........||+.|+|||++.+. .++.++|||||||++|||++| +.||
T Consensus 157 fg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf 233 (301)
T 3q4u_A 157 LGLAVMHSQSTNQ---LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPF 233 (301)
T ss_dssp CTTCEEEETTTTE---EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred CCCeeeccccccc---ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccc
Confidence 9999765432211 01112334699999999999876 455789999999999999999 8888
Q ss_pred CCCch---hHHHHHHHHhhccchhhhcCCCCCC-----ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHh
Q 002289 818 SHGKN---IVREVNIAYQSSMMFSVIDGNMGSY-----PSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 883 (941)
Q Consensus 818 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~ 883 (941)
..... .......... ........ +..++..+.+++..||+.+|++||++.++++.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 234 YDVVPNDPSFEDMRKVVC-------VDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TTTSCSSCCHHHHHHHHT-------TSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cccCCCCcchhhhhHHHh-------ccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 54221 1111111111 11112222 346788999999999999999999999999999875
No 144
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.5e-39 Score=352.24 Aligned_cols=252 Identities=24% Similarity=0.383 Sum_probs=199.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||+||+|... +++.||||+++... ......+.+|+..+..+ +||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 567999999999999999999976 79999999987532 33456788999999999 999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC----------------
Q 002289 684 YEFMSNGTLRDQLSAKS--KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---------------- 745 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---------------- 745 (941)
|||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 99999999999997542 245899999999999999999999999 999999999999984
Q ss_pred ---CCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 746 ---KFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 746 ---~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
...+||+|||.+...... ....||+.|+|||++.+. .++.++|||||||++|||++|..++....
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~ 235 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSP-----------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD 235 (289)
T ss_dssp ---CCCEEECCCTTCEETTCS-----------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH
T ss_pred cCCceEEEEcccccccccCCc-----------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh
Confidence 448999999999865432 123489999999999876 56689999999999999999987764332
Q ss_pred hhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCccccccc
Q 002289 822 NIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSE 901 (941)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~ 901 (941)
... .+..+.....+.. ..+...+++.+|
T Consensus 236 ~~~-------------~~~~~~~~~~~~~---------------------------------------~~~~~~~li~~~ 263 (289)
T 1x8b_A 236 QWH-------------EIRQGRLPRIPQV---------------------------------------LSQEFTELLKVM 263 (289)
T ss_dssp HHH-------------HHHTTCCCCCSSC---------------------------------------CCHHHHHHHHHH
T ss_pred HHH-------------HHHcCCCCCCCcc---------------------------------------cCHHHHHHHHHH
Confidence 110 0111111111111 112234677788
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCC
Q 002289 902 HTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 902 L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
|..||++|||++|+++||||.+..
T Consensus 264 l~~dp~~Rps~~~ll~h~~~~~~~ 287 (289)
T 1x8b_A 264 IHPDPERRPSAMALVKHSVLLSAS 287 (289)
T ss_dssp TCSSGGGSCCHHHHHTCTTC----
T ss_pred hCCCcccCCCHHHHhhChHhhhhc
Confidence 999999999999999999998753
No 145
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=351.13 Aligned_cols=265 Identities=22% Similarity=0.286 Sum_probs=210.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCC--cEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~--~~~LV 683 (941)
.++|.+.+.||+|+||+||+|.+. +++.||||+++.... ...+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 467899999999999999999976 589999999875332 23467889999999999999999999986654 78999
Q ss_pred EecCCCCCHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE----cCCCcEEEeeecccc
Q 002289 684 YEFMSNGTLRDQLSAKS-KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL----DHKFTAKVADFGLSR 758 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl----~~~~~~kl~DFGla~ 758 (941)
|||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||+ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999997643 234899999999999999999999999 9999999999999 888899999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccc--------cCCCCchhHhHHHHHHHHHHHhCCCCCCCCch---hHHHH
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL--------THKLTDKSDVYSLGVVFLELLTGMQPISHGKN---IVREV 827 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~---~~~~~ 827 (941)
...... ......||+.|+|||++. +..++.++|||||||++|||++|+.||..... ..+..
T Consensus 165 ~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~ 236 (319)
T 4euu_A 165 ELEDDE--------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236 (319)
T ss_dssp ECCTTC--------CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHH
T ss_pred ecCCCC--------ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHH
Confidence 764322 123456899999999986 57789999999999999999999999964322 11111
Q ss_pred HHHHhhcc---chhh---h------c---CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHh
Q 002289 828 NIAYQSSM---MFSV---I------D---GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 883 (941)
Q Consensus 828 ~~~~~~~~---~~~~---~------~---~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~ 883 (941)
........ ...+ . . ......+......+..++..|++.||++||++.|++++..+.
T Consensus 237 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 237 YKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred HHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 11111100 0000 0 0 011135578888899999999999999999999999888764
No 146
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=9e-39 Score=356.39 Aligned_cols=266 Identities=24% Similarity=0.477 Sum_probs=217.3
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC--------CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhc-CCCceeeeeeccc
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCD 675 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~ 675 (941)
...++|++.+.||+|+||.||+|.+. +++.||||+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 32 FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 34678999999999999999999863 467899999976433 3346789999999999 8999999999999
Q ss_pred cCCcEEEEEecCCCCCHHHHHhhcCC--------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcE
Q 002289 676 EEGEQMLVYEFMSNGTLRDQLSAKSK--------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNI 741 (941)
Q Consensus 676 ~~~~~~LV~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NI 741 (941)
..+..++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+++ |+||||||+||
T Consensus 112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NI 188 (334)
T 2pvf_A 112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNV 188 (334)
T ss_dssp SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGE
T ss_pred cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceE
Confidence 99999999999999999999976432 34889999999999999999999999 99999999999
Q ss_pred EEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCC
Q 002289 742 LLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHG 820 (941)
Q Consensus 742 Ll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~ 820 (941)
+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...
T Consensus 189 ll~~~~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 263 (334)
T 2pvf_A 189 LVTENNVMKIADFGLARDINNIDY-----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 263 (334)
T ss_dssp EECTTCCEEECCCTTCEECTTTSS-----EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred EEcCCCCEEEcccccccccccccc-----ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC
Confidence 999999999999999986543221 112233456789999999999999999999999999999999 99999754
Q ss_pred chhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 821 KNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
... +... .+..+.....+..++..+.+++..||+.+|.+||++.++++.|+++......
T Consensus 264 ~~~-~~~~---------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~ 322 (334)
T 2pvf_A 264 PVE-ELFK---------LLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 322 (334)
T ss_dssp CHH-HHHH---------HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred CHH-HHHH---------HHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcccc
Confidence 321 1111 1112223344556678899999999999999999999999999998775443
No 147
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2e-39 Score=356.54 Aligned_cols=201 Identities=24% Similarity=0.428 Sum_probs=174.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..++|.+.+.||+|+||+||+|+.. +|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3467899999999999999999975 789999999986554455678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccccCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~~~ 762 (941)
|+++++|.+++.... .+++..++.++.|++.||+|||+.+ |+||||||+||++ +.++.+||+|||+++....
T Consensus 87 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 161 (304)
T 2jam_A 87 LVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN 161 (304)
T ss_dssp CCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred cCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence 999999999986643 4889999999999999999999999 9999999999999 7889999999999875421
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 162 ---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 211 (304)
T 2jam_A 162 ---------GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET 211 (304)
T ss_dssp ---------BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred ---------CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence 11233468999999999999999999999999999999999999996543
No 148
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=8.1e-40 Score=373.55 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=171.7
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC--------CCceeeeeeccc---
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH--------HRNLVSLVGYCD--- 675 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~nIv~l~~~~~--- 675 (941)
.++|++.++||+|+||+||+|+.. +++.||||+++.. ....+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 478999999999999999999964 6899999999753 334567889999999986 788999999986
Q ss_pred -cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCC------
Q 002289 676 -EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKF------ 747 (941)
Q Consensus 676 -~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~------ 747 (941)
.....++||||+ +++|.+.+.......+++..++.++.||+.||+|||++ + |+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhhhhh
Confidence 566899999999 67887777666556799999999999999999999998 8 99999999999999775
Q ss_pred -------------------------------------------cEEEeeeccccccCCCCCCCccccccccccccCCCcc
Q 002289 748 -------------------------------------------TAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYL 784 (941)
Q Consensus 748 -------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ 784 (941)
.+||+|||+|+..... .....||+.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----------~~~~~gt~~y~ 260 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----------FTEDIQTRQYR 260 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----------SCSCCSCGGGC
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----------CccCCCCCccc
Confidence 7999999999865321 23346899999
Q ss_pred cccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 785 DPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 785 aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
|||++.+..++.++|||||||++|||++|+.||...
T Consensus 261 aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~ 296 (397)
T 1wak_A 261 SLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPH 296 (397)
T ss_dssp CHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred CChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999753
No 149
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=3.5e-39 Score=364.16 Aligned_cols=285 Identities=24% Similarity=0.349 Sum_probs=211.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccC-----CcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-----~~~ 680 (941)
.++|++.+.||+|+||.||+|... +++.||||++...... ..+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999965 6889999999754332 346789999999999999999999998654 468
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||++ |+|.+++... .+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++..
T Consensus 106 ~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 99999996 6999998653 4889999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
..... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||............. ..
T Consensus 179 ~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~-------~~ 247 (364)
T 3qyz_A 179 DPDHD----HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHIL-------GI 247 (364)
T ss_dssp CGGGC----BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHH-------HH
T ss_pred CCCCC----ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHH-------HH
Confidence 42211 0111234579999999998765 558999999999999999999999997654322211110 00
Q ss_pred hcCCCCCCChHHHHHHHHHH-HHhcccCCC-CCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCC
Q 002289 840 IDGNMGSYPSECVEKFIKLA-LKCCQDETD-ARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLK 917 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~-~~c~~~~p~-~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~ 917 (941)
.+..+.+....+.... .......|. .+.... ...+..++.+.+||.+||.+||++|||++|+|+
T Consensus 248 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 248 ----LGSPSQEDLNCIINLKARNYLLSLPHKNKVPWN----------RLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp ----HCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHH----------HHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----hCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHH----------HhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0111111111100000 000011111 111111 122344555678999999999999999999999
Q ss_pred CCCCCCC
Q 002289 918 HPYVSSD 924 (941)
Q Consensus 918 Hpwf~~~ 924 (941)
||||+..
T Consensus 314 hp~~~~~ 320 (364)
T 3qyz_A 314 HPYLEQY 320 (364)
T ss_dssp SGGGTTT
T ss_pred Ccchhhc
Confidence 9999875
No 150
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=7.5e-39 Score=353.76 Aligned_cols=271 Identities=25% Similarity=0.427 Sum_probs=220.0
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCCch-hhHhHHHHHHHHHhc-CCCceeee
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRL-HHRNLVSL 670 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~nIv~l 670 (941)
+...++....++|++.+.||+|+||+||+|.+ .+++.||||+++..... ..+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34456666788999999999999999999984 35689999999865433 345789999999999 79999999
Q ss_pred eeccccCC-cEEEEEecCCCCCHHHHHhhcCC--------------CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEecc
Q 002289 671 VGYCDEEG-EQMLVYEFMSNGTLRDQLSAKSK--------------EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRD 735 (941)
Q Consensus 671 ~~~~~~~~-~~~LV~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~D 735 (941)
++++...+ ..++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+++ |+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---ccccc
Confidence 99987654 58999999999999999976542 23899999999999999999999999 99999
Q ss_pred CCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CC
Q 002289 736 IKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GM 814 (941)
Q Consensus 736 Lkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~ 814 (941)
|||+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~ 248 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPD-----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 248 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTT-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CccceEEECCCCCEEECCCccccccccCcc-----ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986543221 122234557889999999999999999999999999999998 99
Q ss_pred CCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 815 QPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 815 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.||............ +..+.....+..++..+.+++..||+.+|.+||++.+++++|+.+...
T Consensus 249 ~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 249 SPYPGVKIDEEFCRR---------LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp CSSTTCCCSHHHHHH---------HHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHH---------hccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 999754432221111 111222334455667899999999999999999999999999988654
No 151
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=361.84 Aligned_cols=200 Identities=24% Similarity=0.374 Sum_probs=175.1
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch--------hhHhHHHHHHHHHhcCCCceeeeeeccccC
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 677 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 677 (941)
..++|++.+.||+|+||+||+|+.. +++.||||+++..... ..+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 3578999999999999999999964 6899999998764321 234678899999999999999999999999
Q ss_pred CcEEEEEecCCCC-CHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecc
Q 002289 678 GEQMLVYEFMSNG-TLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGL 756 (941)
Q Consensus 678 ~~~~LV~e~~~~g-sL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGl 756 (941)
+..++||||+.+| +|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~ 176 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGS 176 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeeccc
Confidence 9999999999777 9999996543 4899999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCC
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISH 819 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~ 819 (941)
++...... ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||..
T Consensus 177 a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 232 (335)
T 3dls_A 177 AAYLERGK--------LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE 232 (335)
T ss_dssp CEECCTTC--------CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred ceECCCCC--------ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh
Confidence 98654321 1234568999999999998876 7899999999999999999999964
No 152
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=7.4e-39 Score=356.84 Aligned_cols=266 Identities=24% Similarity=0.384 Sum_probs=216.1
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCC------CcEEEEEEeccCCc-hhhHhHHHHHHHHHhc-CCCceeeeeecc
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYC 674 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 674 (941)
++....++|++.+.||+|+||+||+|.... ++.||+|+++.... ...+.+.+|+++++++ +||||+++++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 455667899999999999999999999642 24899999976443 3356789999999999 899999999999
Q ss_pred ccCCcEEEEEecCCCCCHHHHHhhcC------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEE
Q 002289 675 DEEGEQMLVYEFMSNGTLRDQLSAKS------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNIL 742 (941)
Q Consensus 675 ~~~~~~~LV~e~~~~gsL~~~l~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NIL 742 (941)
...+..++||||+++|+|.+++.... ...+++..++.++.|++.||+|||+++ |+||||||+||+
T Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl 196 (333)
T 2i1m_A 120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVL 196 (333)
T ss_dssp CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCE
T ss_pred ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEE
Confidence 99999999999999999999997532 345799999999999999999999999 999999999999
Q ss_pred EcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCc
Q 002289 743 LDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGK 821 (941)
Q Consensus 743 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~ 821 (941)
++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |..||....
T Consensus 197 ~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 271 (333)
T 2i1m_A 197 LTNGHVAKIGDFGLARDIMNDSN-----YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL 271 (333)
T ss_dssp EEGGGEEEBCCCGGGCCGGGCTT-----SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ECCCCeEEECccccccccccccc-----eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 99999999999999986533211 112233457789999999999999999999999999999999 999997543
Q ss_pred hhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 822 NIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
........ . ........+..++..+.+++..||+.+|.+||++.++++.|+++..
T Consensus 272 ~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 272 VNSKFYKL-V--------KDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp SSHHHHHH-H--------HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHH-H--------hcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence 32211111 1 0111222344456788999999999999999999999999988754
No 153
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=6.4e-39 Score=364.46 Aligned_cols=202 Identities=24% Similarity=0.301 Sum_probs=173.7
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CC-----ceeeeeeccccCC
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HR-----NLVSLVGYCDEEG 678 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----nIv~l~~~~~~~~ 678 (941)
...++|++.+.||+|+||+||+|... +++.||||+++.. .....++..|+++++.++ |+ +|+++++++...+
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 34678999999999999999999965 6889999999753 233456788999988885 55 4999999999999
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhc--CCCCCeEeccCCCCcEEEc--CCCcEEEeee
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHT--EADPPVFHRDIKASNILLD--HKFTAKVADF 754 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~--~~~~~ivH~DLkp~NILl~--~~~~~kl~DF 754 (941)
..++||||++ |+|.+++.......+++..++.++.|++.||.|||+ .+ |+||||||+|||++ .++.+||+||
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~---ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELS---IIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTC---EECCCCSGGGEEESSTTSCCEEECCC
T ss_pred ceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCC---EEcCCCCcccEEEecCCCCcEEEEec
Confidence 9999999995 699999987765679999999999999999999995 45 99999999999995 4788999999
Q ss_pred ccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 755 GLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
|+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 206 G~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~ 263 (382)
T 2vx3_A 206 GSSCQLGQR----------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263 (382)
T ss_dssp TTCEETTCC----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred cCceecccc----------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 999865321 2345689999999999999999999999999999999999999986544
No 154
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.9e-39 Score=372.97 Aligned_cols=260 Identities=23% Similarity=0.388 Sum_probs=195.9
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--------hhhHhHHHHHHHHHhcCCCceeeeeecccc
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 676 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 676 (941)
...++|.+.+.||+|+||+||+|... +++.||||++..... .....+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 34679999999999999999999965 689999999875321 112358899999999999999999999854
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC---cEEEee
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF---TAKVAD 753 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~---~~kl~D 753 (941)
+..++||||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++ .+||+|
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred -CceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEee
Confidence 4589999999999999988654 45899999999999999999999999 99999999999997544 599999
Q ss_pred eccccccCCCCCCCccccccccccccCCCccccccccc---CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHH
Q 002289 754 FGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT---HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA 830 (941)
Q Consensus 754 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~ 830 (941)
||+|+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........
T Consensus 286 FG~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~---- 353 (419)
T 3i6u_A 286 FGHSKILGET--------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL---- 353 (419)
T ss_dssp SSTTTSCC-------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCH----
T ss_pred cccceecCCC--------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHH----
Confidence 9999865422 22334569999999999864 66888999999999999999999999653321100
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCC
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPP 910 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ 910 (941)
...+......+..+. .....+.+.+||.+||..||++||
T Consensus 354 ------~~~i~~~~~~~~~~~-----------------------------------~~~~~~~~~~li~~~L~~dP~~Rp 392 (419)
T 3i6u_A 354 ------KDQITSGKYNFIPEV-----------------------------------WAEVSEKALDLVKKLLVVDPKARF 392 (419)
T ss_dssp ------HHHHHTTCCCCCHHH-----------------------------------HTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred ------HHHHhcCCCCCCchh-----------------------------------hcccCHHHHHHHHHHccCChhHCc
Confidence 000111111111100 011223345788899999999999
Q ss_pred CCccCCCCCCCCCC
Q 002289 911 SSSSMLKHPYVSSD 924 (941)
Q Consensus 911 sa~e~L~Hpwf~~~ 924 (941)
|++|+|+||||+..
T Consensus 393 s~~e~l~hp~~~~~ 406 (419)
T 3i6u_A 393 TTEEALRHPWLQDE 406 (419)
T ss_dssp CHHHHHHSGGGCCH
T ss_pred CHHHHhCCcccCCh
Confidence 99999999999763
No 155
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-38 Score=353.19 Aligned_cols=272 Identities=27% Similarity=0.415 Sum_probs=214.8
Q ss_pred cCC-CccceeeccCcEEEEEEEeC-----CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeecccc--CCc
Q 002289 609 NNF-NSSTQIGQGGYGKVYKGILP-----DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGE 679 (941)
Q Consensus 609 ~~y-~~~~~lG~G~fg~Vy~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~--~~~ 679 (941)
++| ++.+.||+|+||+||++.+. +++.||||+++.... ...+.+.+|++++++++||||+++++++.+ ...
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS 109 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence 344 88999999999999998642 588999999986533 335678999999999999999999999976 457
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++|+|.+++.... +++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++.
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 183 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKA 183 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGSC---CCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred EEEEEecccCCcHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCcccccc
Confidence 899999999999999996543 889999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHH----HHHhhcc
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVN----IAYQSSM 835 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~----~~~~~~~ 835 (941)
...... .........+|..|+|||++.+..++.++|||||||++|||++|+.||........... .......
T Consensus 184 ~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 259 (318)
T 3lxp_A 184 VPEGHE----YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLR 259 (318)
T ss_dssp CCTTCS----EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHH
T ss_pred cccccc----ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHH
Confidence 643221 11223345578889999999999999999999999999999999999864322100000 0000001
Q ss_pred chhh-hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCC
Q 002289 836 MFSV-IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPES 890 (941)
Q Consensus 836 ~~~~-~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~ 890 (941)
+... ........+..++..+.+++..||+.+|.+||++.++++.|+.+.+.+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 260 LTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 1111 223334456677889999999999999999999999999999987765543
No 156
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.2e-38 Score=347.17 Aligned_cols=265 Identities=31% Similarity=0.472 Sum_probs=210.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeCC----CcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeecc-ccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~-~~~~~~~ 681 (941)
..+|++.+.||+|+||+||+|.+.+ +..||+|.+..... ...+.+.+|++++++++||||+++++++ ..++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568888999999999999998642 23689999876433 3356789999999999999999999985 5566889
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++...
T Consensus 104 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECccccccccc
Confidence 999999999999999653 345889999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCC-CCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQ-PISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~-Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
..... .........+|+.|+|||.+.+..++.++||||+|+++|||++|.. ||..... .+... .+.
T Consensus 180 ~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-~~~~~---------~~~ 246 (298)
T 3f66_A 180 DKEYY---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FDITV---------YLL 246 (298)
T ss_dssp CGGGC---BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT-TTHHH---------HHH
T ss_pred ccchh---ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH-HHHHH---------HHh
Confidence 32211 1122344567889999999999999999999999999999999544 5543322 11111 112
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
.+.....+..++..+.+++..|++.+|.+||++.++++.|+++...+..
T Consensus 247 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 247 QGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred cCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 2223334555667899999999999999999999999999999876544
No 157
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=8.9e-39 Score=352.71 Aligned_cols=260 Identities=23% Similarity=0.341 Sum_probs=198.1
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCc----
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE---- 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~---- 679 (941)
.++|++.+.||+|+||.||+|++ .+++.||||+++..... ..+.+.+|++++++++||||+++++++...+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999996 57899999999764322 23578899999999999999999999866543
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++|+|.++++... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred cEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 499999999999999997654 4899999999999999999999999 99999999999999999999999999986
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
....... ........||+.|+|||++.+..++.++|||||||++|||++|+.||............ ........
T Consensus 166 ~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~-~~~~~~~~- 239 (311)
T 3ork_A 166 IADSGNS----VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH-VREDPIPP- 239 (311)
T ss_dssp --------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-HHCCCCCH-
T ss_pred ccccccc----cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH-hcCCCCCc-
Confidence 5432210 12223456899999999999999999999999999999999999999765432221111 11100000
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHH-HHHHHh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVM-RELESI 883 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~-~~L~~~ 883 (941)
......++..+.+++.+|++.+|++||+..+++ ..+...
T Consensus 240 -----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 240 -----SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp -----HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred -----ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 001123457788999999999999999776655 444443
No 158
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.5e-39 Score=357.01 Aligned_cols=273 Identities=27% Similarity=0.389 Sum_probs=216.6
Q ss_pred hcCCCccceeeccCcEEEEEEEe-----CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccc--cCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCD--EEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~--~~~~~ 680 (941)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++|+||+++++++. ..+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 46888999999999999999984 368899999998766666678999999999999999999999875 45678
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 177 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLL 177 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred EEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccceec
Confidence 99999999999999997643 25899999999999999999999999 999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHH-HHH----hhcc
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVN-IAY----QSSM 835 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~-~~~----~~~~ 835 (941)
...... ........||..|+|||++.+..++.++|||||||++|||++|+.||........... ... ....
T Consensus 178 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 253 (327)
T 3lxl_A 178 PLDKDY----YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRL 253 (327)
T ss_dssp CTTCSE----EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHH
T ss_pred ccCCcc----ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHH
Confidence 432211 1122344578889999999999999999999999999999999999864322110000 000 0001
Q ss_pred chhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 836 MFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
...+..+.....+..++..+.+++..|++.+|.+||++.++++.|+.+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 254 LELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred HHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 11122233344566778889999999999999999999999999998866443
No 159
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.9e-38 Score=344.21 Aligned_cols=254 Identities=31% Similarity=0.533 Sum_probs=206.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhh-------HhHHHHHHHHHhcCCCceeeeeeccccCCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGE-------KEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~-------~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 679 (941)
.++|++.+.||+|+||+||+|++. +++.||+|++........ +.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 468889999999999999999974 789999999865432221 57899999999999999999999997654
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc-----EEEeee
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT-----AKVADF 754 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~-----~kl~DF 754 (941)
++||||+++|+|.+.+.... ..+++..++.++.|++.||+|||+++ ++|+||||||+||+++.++. +||+||
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df 173 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADF 173 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred -eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence 69999999999999886543 46899999999999999999999875 45999999999999988776 999999
Q ss_pred ccccccCCCCCCCccccccccccccCCCcccccccc--cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 755 GLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL--THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
|+++.... ......||+.|+|||++. ...++.++||||+||++|||++|+.||...............
T Consensus 174 g~~~~~~~----------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~ 243 (287)
T 4f0f_A 174 GLSQQSVH----------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIR 243 (287)
T ss_dssp TTCBCCSS----------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHH
T ss_pred Cccccccc----------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHh
Confidence 99974321 223456899999999984 456789999999999999999999999754332111111110
Q ss_pred hccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 002289 833 SSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELES 882 (941)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~ 882 (941)
........+..++..+.+++..||+.+|.+||++.++++.|++
T Consensus 244 -------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 244 -------EEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp -------HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred -------ccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 1122234566777889999999999999999999999999875
No 160
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=8.5e-39 Score=351.04 Aligned_cols=269 Identities=25% Similarity=0.402 Sum_probs=211.3
Q ss_pred hcCCCccceeeccCcEEEEEEEe-----CCCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccC--Cc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~--~~ 679 (941)
..+|++.+.||+|+||.||+|++ .+++.||||+++.... ...+.+.+|++++++++||||+++++++... ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 45688899999999999999983 3689999999875432 2346789999999999999999999999776 67
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++|+|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECccccccc
Confidence 899999999999999996543 35899999999999999999999999 99999999999999999999999999987
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHH-----hhc
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAY-----QSS 834 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~-----~~~ 834 (941)
...... .........||..|+|||++.+..++.++||||+|+++|||++|+.|+.............. ...
T Consensus 176 ~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 251 (302)
T 4e5w_A 176 IETDKE----YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTR 251 (302)
T ss_dssp CCTTCC----EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHH
T ss_pred ccCCCc----ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHH
Confidence 643321 01223345678889999999999999999999999999999999998643211100000000 000
Q ss_pred cchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 835 MMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
....+..+.....+..++..+.+++.+||+.+|.+||++.++++.|+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 252 LVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 11112223334456677788999999999999999999999999998764
No 161
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.7e-39 Score=357.44 Aligned_cols=267 Identities=27% Similarity=0.450 Sum_probs=219.3
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEeC------CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeee
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLV 671 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~ 671 (941)
+..+++....++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|+++++.++||||++++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 94 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 94 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence 344566677889999999999999999999864 368899999976433 3345789999999999999999999
Q ss_pred eccccCCcEEEEEecCCCCCHHHHHhhcC--------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE
Q 002289 672 GYCDEEGEQMLVYEFMSNGTLRDQLSAKS--------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL 743 (941)
Q Consensus 672 ~~~~~~~~~~LV~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl 743 (941)
+++.+.+..++||||+++|+|.+++.... ...+++..++.++.|++.||+|||+++ |+||||||+||++
T Consensus 95 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli 171 (322)
T 1p4o_A 95 GVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMV 171 (322)
T ss_dssp EEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEE
T ss_pred EEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEE
Confidence 99999999999999999999999986532 245789999999999999999999999 9999999999999
Q ss_pred cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCch
Q 002289 744 DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKN 822 (941)
Q Consensus 744 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~ 822 (941)
+.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 172 ~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 246 (322)
T 1p4o_A 172 AEDFTVKIGDFGMTRDIYETDY-----YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN 246 (322)
T ss_dssp CTTCCEEECCTTCCCGGGGGGC-----EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH
T ss_pred cCCCeEEECcCccccccccccc-----cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH
Confidence 9999999999999975432110 112233456889999999999999999999999999999999 8889875433
Q ss_pred hHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHh
Q 002289 823 IVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 883 (941)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~ 883 (941)
. +... .+..+.....+..++..+.+++..|++.+|.+||++.++++.|++.
T Consensus 247 ~-~~~~---------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 247 E-QVLR---------FVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp H-HHHH---------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred H-HHHH---------HHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 1 1111 1222333445566778899999999999999999999999999865
No 162
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=5.2e-39 Score=350.38 Aligned_cols=252 Identities=23% Similarity=0.392 Sum_probs=207.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CC-------cEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DG-------TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 679 (941)
.++|.+.+.||+|+||+||+|... ++ ..||+|++........+.+.+|++++++++||||+++++++...+.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 467888999999999999999864 23 5799999976555566789999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc--------EEE
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT--------AKV 751 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~--------~kl 751 (941)
.++||||+++|+|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+|||++.++. +||
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeee
Confidence 999999999999999997643 34889999999999999999999999 999999999999998887 999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHH
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA 830 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~ 830 (941)
+|||++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|..|+....+........
T Consensus 163 ~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~ 231 (289)
T 4fvq_A 163 SDPGISITVLP-----------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFY 231 (289)
T ss_dssp CCCCSCTTTSC-----------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHH
T ss_pred ccCcccccccC-----------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHh
Confidence 99999875421 123457889999999987 778999999999999999999666555443322222111
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
. .....+...+..+.+++..||+.+|.+||++.++++.|+++..
T Consensus 232 ~-----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 232 E-----------DRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp H-----------TTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred h-----------ccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 1 1112233335668899999999999999999999999998754
No 163
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=345.41 Aligned_cols=261 Identities=27% Similarity=0.436 Sum_probs=214.3
Q ss_pred hcCCCccc-eeeccCcEEEEEEEeC---CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSST-QIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|.+.+ .||+|+||.||+|.+. ++..||||+++.... ...+.+.+|++++++++||||+++++++ ..+..++
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 45666666 8999999999999853 578899999986433 3456789999999999999999999999 4567999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 87 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 99999999999999643 345899999999999999999999999 99999999999999999999999999987643
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.... ........+|+.|+|||++.+..++.++||||||+++|||++ |+.||....... ... .+..
T Consensus 163 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~---------~i~~ 228 (287)
T 1u59_A 163 DDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE-VMA---------FIEQ 228 (287)
T ss_dssp CSCE----ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH-HHH---------HHHT
T ss_pred Ccce----eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH-HHH---------HHhc
Confidence 2210 111233456889999999998899999999999999999999 999997654321 111 1122
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
+.....+..++..+.+++..||+.+|.+||++.++++.|+.+....
T Consensus 229 ~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 274 (287)
T 1u59_A 229 GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 274 (287)
T ss_dssp TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 2334456677789999999999999999999999999999886643
No 164
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=360.73 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=209.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeCC---------CcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceee---------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVS--------- 669 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~--------- 669 (941)
.++|++.+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 4689999999999999999999753 789999998753 46889999999999999998
Q ss_pred ------eeecccc-CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEE
Q 002289 670 ------LVGYCDE-EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNIL 742 (941)
Q Consensus 670 ------l~~~~~~-~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NIL 742 (941)
+++++.. .+..++||||+ +++|.+++.......+++..++.++.||+.||+|||+++ |+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEE
Confidence 4555544 67889999999 999999998764456999999999999999999999999 999999999999
Q ss_pred EcCCC--cEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 743 LDHKF--TAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 743 l~~~~--~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
++.++ .+||+|||+++....................||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 9999999999866432211111112223457999999999999999999999999999999999999999754
Q ss_pred chhHHHHHHHHh--hccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 821 KNIVREVNIAYQ--SSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 821 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
............ ........... .....++..+.+++..|++.+|.+||++.++++.|+.+......
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVDKPGPFVGPC--GHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp TTCHHHHHHHHHHHHHSCCCEECTT--SCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHhccCChhhhhhhc--cccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 311111111110 00000000000 00113357789999999999999999999999999998876543
No 165
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=7.9e-39 Score=361.18 Aligned_cols=262 Identities=24% Similarity=0.416 Sum_probs=207.7
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--------hhhHhHHHHHHHHHhc-CCCceeeee
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRL-HHRNLVSLV 671 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~nIv~l~ 671 (941)
.......++|++.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|+++++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 344455678999999999999999999975 799999999875431 1134678999999999 799999999
Q ss_pred eccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEE
Q 002289 672 GYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKV 751 (941)
Q Consensus 672 ~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl 751 (941)
+++...+..++||||+++++|.+++.... .+++..++.++.||+.||.|||+.+ |+||||||+||+++.++.+||
T Consensus 167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ikl 241 (365)
T 2y7j_A 167 DSYESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRL 241 (365)
T ss_dssp EEEEBSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEE
T ss_pred EEEeeCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEE
Confidence 99999999999999999999999997543 4899999999999999999999999 999999999999999999999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCccccccccc------CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHH
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT------HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVR 825 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~ 825 (941)
+|||++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 242 ~DfG~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~ 313 (365)
T 2y7j_A 242 SDFGFSCHLEPGE--------KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILM 313 (365)
T ss_dssp CCCTTCEECCTTC--------CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred EecCcccccCCCc--------ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHH
Confidence 9999998654321 2234568999999999864 3578899999999999999999999975432111
Q ss_pred HHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCC
Q 002289 826 EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSK 905 (941)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~d 905 (941)
... +..+.. .++ ... .........++|.+||..|
T Consensus 314 -~~~---------i~~~~~-~~~------------------------~~~-----------~~~~~~~~~~li~~~L~~d 347 (365)
T 2y7j_A 314 -LRM---------IMEGQY-QFS------------------------SPE-----------WDDRSSTVKDLISRLLQVD 347 (365)
T ss_dssp -HHH---------HHHTCC-CCC------------------------HHH-----------HSSSCHHHHHHHHHHSCSS
T ss_pred -HHH---------HHhCCC-CCC------------------------Ccc-----------cccCCHHHHHHHHHHcCCC
Confidence 000 000000 000 000 0111223447888999999
Q ss_pred CCCCCCCccCCCCCCCC
Q 002289 906 EETPPSSSSMLKHPYVS 922 (941)
Q Consensus 906 P~~R~sa~e~L~Hpwf~ 922 (941)
|++|||++|+|+||||+
T Consensus 348 P~~Rps~~ell~hp~f~ 364 (365)
T 2y7j_A 348 PEARLTAEQALQHPFFE 364 (365)
T ss_dssp TTTSCCHHHHHHSGGGC
T ss_pred hhHCcCHHHHhcCcccC
Confidence 99999999999999996
No 166
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.2e-38 Score=344.18 Aligned_cols=259 Identities=26% Similarity=0.438 Sum_probs=209.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCC----CcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
..++|.+.+.||+|+||+||+|.+.+ +..||+|++.... ....+.+.+|++++++++||||+++++++.+ +..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 45788899999999999999998542 3469999987653 3345679999999999999999999999865 4568
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+||||+++++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++....
T Consensus 89 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 9999999999999997643 35889999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
... ........+|+.|+|||++.+..++.++||||||+++|||++ |+.||......... . .+.
T Consensus 165 ~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~-~---------~~~ 228 (281)
T 3cc6_A 165 DED------YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVI-G---------VLE 228 (281)
T ss_dssp --------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHH-H---------HHH
T ss_pred ccc------ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHH-H---------HHh
Confidence 322 111233456789999999999999999999999999999998 99999754332111 1 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.+.....+..++..+.+++.+|++.+|.+||++.++++.|+.+...
T Consensus 229 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 229 KGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 1222334555677899999999999999999999999999987653
No 167
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=2.6e-39 Score=371.97 Aligned_cols=279 Identities=22% Similarity=0.306 Sum_probs=200.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccC------CcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------GEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~------~~~ 680 (941)
..+|++.+.||+|+||.||+|++. +|+.||||++.... ....+|++++++++||||++++++|... ...
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 346888999999999999999975 68999999986532 2345799999999999999999988432 236
Q ss_pred EEEEecCCCCCHHHHHhh--cCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC-CcEEEeeeccc
Q 002289 681 MLVYEFMSNGTLRDQLSA--KSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK-FTAKVADFGLS 757 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~-~~~kl~DFGla 757 (941)
++||||+++ ++.+.+.. .....+++..++.++.||++||+|||+++ |+||||||+|||++.+ +.+||+|||+|
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhh
Confidence 799999964 77776643 33456899999999999999999999999 9999999999999965 67899999999
Q ss_pred cccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 758 RLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
+...... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||............. .
T Consensus 205 ~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~-~---- 271 (420)
T 1j1b_A 205 KQLVRGE--------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEII-K---- 271 (420)
T ss_dssp EECCTTC--------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH-H----
T ss_pred hhcccCC--------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-H----
Confidence 8653321 12345689999999999765 79999999999999999999999997654422211111 0
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC-CCCCCCCcccccccCCCCCCCCCCCccC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM-PESDTKTPEFINSEHTSKEETPPSSSSM 915 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~-~~~~~~~~dll~~~L~~dP~~R~sa~e~ 915 (941)
.+ +....+.... . .-......-|.... ..+...+ +...+.+.+||.+||.+||++|+|+.|+
T Consensus 272 --~l----g~p~~~~~~~---~---~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~ 334 (420)
T 1j1b_A 272 --VL----GTPTREQIRE---M---NPNYTEFKFPQIKA-----HPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 334 (420)
T ss_dssp --HH----CSCCHHHHHH---H---CSCCCCCCCCCCCC-----CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred --Hh----CCCCHHHHHh---h---ChhhhhhccCccCC-----CCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHH
Confidence 00 0111111110 0 00000000010000 0000011 2234456789999999999999999999
Q ss_pred CCCCCCCCC
Q 002289 916 LKHPYVSSD 924 (941)
Q Consensus 916 L~Hpwf~~~ 924 (941)
|+||||+.-
T Consensus 335 l~hp~f~~~ 343 (420)
T 1j1b_A 335 CAHSFFDEL 343 (420)
T ss_dssp HTSGGGGGG
T ss_pred hCCHhhccc
Confidence 999999653
No 168
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1e-38 Score=356.03 Aligned_cols=288 Identities=21% Similarity=0.316 Sum_probs=210.0
Q ss_pred hcCCCccceeeccCcEEEEEEEe-C-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc------eeeeeeccccCCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-P-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~ 679 (941)
.++|++.+.||+|+||+||+|.+ . +++.||||+++.. ....+.+.+|+++++.++|++ ++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999986 3 6899999999753 233567889999999987654 9999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC--------------
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH-------------- 745 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~-------------- 745 (941)
.++||||+ +++|.+++......++++..++.++.|+++||+|||+++ |+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 899999998776667999999999999999999999999 999999999999987
Q ss_pred -----CCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 746 -----KFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 746 -----~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 237 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH----------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH 237 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC----------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccCCCceEeeCcccccCccc----------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 668999999999764321 23346899999999999999999999999999999999999999765
Q ss_pred chhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh----hC---CCCCCC
Q 002289 821 KNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN----MM---PESDTK 893 (941)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~----~~---~~~~~~ 893 (941)
.......... .. .+..|......... ......+....+.............. .. ....+.
T Consensus 238 ~~~~~~~~~~-------~~----~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (339)
T 1z57_A 238 DSKEHLAMME-------RI----LGPLPKHMIQKTRK--RKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHER 304 (339)
T ss_dssp CHHHHHHHHH-------HH----HCSCCHHHHHHCSC--GGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred ChHHHHHHHH-------HH----hCCCCHHHHhhccc--hhHHhhccccccccccccchhhhcCcchhhhcccchhhHHH
Confidence 4322111100 00 01122221111000 00000000000111111111111100 00 000122
Q ss_pred CcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 894 TPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 894 ~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..+||.+||..||++|||++|+|+||||+.
T Consensus 305 l~~li~~~L~~dP~~Rpt~~ell~hp~f~~ 334 (339)
T 1z57_A 305 LFDLIQKMLEYDPAKRITLREALKHPFFDL 334 (339)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTTSGGGGG
T ss_pred HHHHHHHHhCcCcccccCHHHHhcCHHHHH
Confidence 357999999999999999999999999976
No 169
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=360.57 Aligned_cols=265 Identities=31% Similarity=0.506 Sum_probs=203.0
Q ss_pred cCCCccceeeccCcEEEEEEEeC--CC--cEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccc-cCCcEEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP--DG--TVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCD-EEGEQML 682 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~-~~~~~~L 682 (941)
..|++.+.||+|+||+||+|.+. ++ ..||||.++... ....+.+.+|+.++++++||||+++++++. .++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 34667789999999999999863 22 468999987533 234568999999999999999999999864 4567899
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCC
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~ 762 (941)
||||+++|+|.+++.... ..+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 169 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeeccccccccc
Confidence 999999999999996543 45889999999999999999999999 99999999999999999999999999986543
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.... .........+|+.|+|||++.+..++.++|||||||++|||++ |..||........ . ..+..
T Consensus 245 ~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~-~---------~~~~~ 311 (373)
T 3c1x_A 245 KEFD---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI-T---------VYLLQ 311 (373)
T ss_dssp ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCH-H---------HHHHT
T ss_pred cccc---cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHH-H---------HHHHc
Confidence 2211 1112234457889999999999999999999999999999999 6667754332111 1 11122
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPES 890 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~ 890 (941)
+.....+..++..+.+++.+||+.+|++||++.++++.|+.+...+...
T Consensus 312 ~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 312 GRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 2333445667788999999999999999999999999999998766543
No 170
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=9.3e-39 Score=352.76 Aligned_cols=270 Identities=26% Similarity=0.437 Sum_probs=209.1
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccc
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCD 675 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~ 675 (941)
+++....++|.+.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|++++++++||||+++++++.
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 106 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence 444556788999999999999999999853 34589999987543 233467899999999999999999999987
Q ss_pred cCC-----cEEEEEecCCCCCHHHHHhh----cCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC
Q 002289 676 EEG-----EQMLVYEFMSNGTLRDQLSA----KSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK 746 (941)
Q Consensus 676 ~~~-----~~~LV~e~~~~gsL~~~l~~----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~ 746 (941)
..+ ..++||||+++|+|.+++.. .....+++..++.++.|+++||.|||+++ |+||||||+||+++.+
T Consensus 107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~ 183 (313)
T 3brb_A 107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDD 183 (313)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTT
T ss_pred eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCC
Confidence 654 35999999999999999853 23456999999999999999999999999 9999999999999999
Q ss_pred CcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHH
Q 002289 747 FTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVR 825 (941)
Q Consensus 747 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~ 825 (941)
+.+||+|||+++....... ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||........
T Consensus 184 ~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~ 258 (313)
T 3brb_A 184 MTVCVADFGLSKKIYSGDY-----YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEM 258 (313)
T ss_dssp SCEEECSCSCC---------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred CcEEEeecCcceecccccc-----cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHH
Confidence 9999999999986543221 112233457889999999999999999999999999999999 8889875443211
Q ss_pred HHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 826 EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
. ..+..+.....+..++..+.+++..|+..+|.+||++.++++.|+++....++
T Consensus 259 ~----------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 259 Y----------DYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp H----------HHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred H----------HHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 1 11222333445566778899999999999999999999999999999876653
No 171
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=381.51 Aligned_cols=260 Identities=27% Similarity=0.429 Sum_probs=209.6
Q ss_pred CCCccc-eeeccCcEEEEEEEeC---CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 610 NFNSST-QIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 610 ~y~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
++.+.+ .||+|+||.||+|.+. ++..||||+++.... ...+.+.+|++++++++||||+++++++.. +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 344444 7999999999999864 467899999986433 345789999999999999999999999976 5699999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPD 764 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~ 764 (941)
||+++|+|.+++... ...+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 415 E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~ 490 (613)
T 2ozo_A 415 EMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADD 490 (613)
T ss_dssp ECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC---
T ss_pred EeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC
Confidence 999999999999654 346899999999999999999999999 9999999999999999999999999998654322
Q ss_pred CCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 765 IEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 765 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.. ........+++.|+|||++.+..++.++|||||||++|||++ |+.||....... .. ..+..+.
T Consensus 491 ~~----~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-~~---------~~i~~~~ 556 (613)
T 2ozo_A 491 SY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE-VM---------AFIEQGK 556 (613)
T ss_dssp ---------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH-HH---------HHHHTTC
T ss_pred ce----eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HH---------HHHHcCC
Confidence 10 111223345689999999999999999999999999999998 999997654321 11 1122233
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
....+..++..+.+++..||+.+|++||++.++++.|+.+.....
T Consensus 557 ~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~ 601 (613)
T 2ozo_A 557 RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA 601 (613)
T ss_dssp CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhc
Confidence 445667788899999999999999999999999999998876543
No 172
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.2e-38 Score=345.71 Aligned_cols=262 Identities=27% Similarity=0.477 Sum_probs=201.6
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
...++|++.++||+|+||+||+|++.. .||||+++.... ...+.+.+|++++++++|+||+++++++ ..+..++|
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv 97 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIV 97 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEE
T ss_pred cCccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEE
Confidence 346789999999999999999998643 599999875432 3346789999999999999999999965 45578999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 98 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 98 TQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp EECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred EEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceeccccccc
Confidence 9999999999999654 345899999999999999999999999 999999999999999999999999999765322
Q ss_pred CCCCccccccccccccCCCcccccccc---cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFL---THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.. ........||+.|+|||++. +..++.++||||||+++|||++|+.||.............. .. ..
T Consensus 174 ~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~-~~----~~ 243 (289)
T 3og7_A 174 SG-----SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-RG----SL 243 (289)
T ss_dssp ---------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHH-HT----SC
T ss_pred cc-----cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhc-cc----cc
Confidence 11 12233456899999999987 56788899999999999999999999976554332222211 11 11
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
..........++..+.+++..|++.+|.+||++.++++.|+++.
T Consensus 244 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 244 SPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp CCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 11222334566788999999999999999999999999998864
No 173
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.6e-38 Score=344.05 Aligned_cols=263 Identities=22% Similarity=0.319 Sum_probs=207.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 467899999999999999999975 68999999987433 2335678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++++|.+++... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||.+........
T Consensus 86 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 86 YCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp CCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred ecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 99999999998543 45899999999999999999999999 99999999999999999999999999976532211
Q ss_pred CCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
........||..|+|||++.+..+ +.++||||||+++|||++|+.||..............
T Consensus 161 -----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~------------- 222 (276)
T 2yex_A 161 -----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK------------- 222 (276)
T ss_dssp -----ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHH-------------
T ss_pred -----hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhh-------------
Confidence 112234568999999999988765 7789999999999999999999975432111111000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
. .....+.. ...++...++|.+||..||++|||++|+++||||+..
T Consensus 223 ---------------~-----~~~~~~~~--------------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~ 268 (276)
T 2yex_A 223 ---------------E-----KKTYLNPW--------------KKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP 268 (276)
T ss_dssp ---------------T-----TCTTSTTG--------------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred ---------------h-----cccccCch--------------hhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccCh
Confidence 0 00000000 0112223468888999999999999999999999876
Q ss_pred CCC
Q 002289 925 VSG 927 (941)
Q Consensus 925 ~~~ 927 (941)
...
T Consensus 269 ~~~ 271 (276)
T 2yex_A 269 LKK 271 (276)
T ss_dssp CC-
T ss_pred hhc
Confidence 543
No 174
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=5.1e-39 Score=363.75 Aligned_cols=278 Identities=23% Similarity=0.371 Sum_probs=206.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE----
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ---- 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~---- 680 (941)
.++|.+.+.||+|+||+||+|.+. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999965 689999999976432 2346788999999999999999999999776654
Q ss_pred --EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 681 --MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 681 --~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
++||||++ ++|.+++.. .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred eEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999996 689888732 3899999999999999999999999 9999999999999999999999999997
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||............ ..
T Consensus 193 ~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i-~~----- 256 (371)
T 4exu_A 193 HADA----------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQI-LK----- 256 (371)
T ss_dssp -----------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-HH-----
T ss_pred cccc----------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH-HH-----
Confidence 5432 1234568999999999987 78899999999999999999999999765432221111 10
Q ss_pred hhhcCCCCCCChHHHHHHHH-HHHHhcc-cCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccC
Q 002289 838 SVIDGNMGSYPSECVEKFIK-LALKCCQ-DETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSM 915 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~-l~~~c~~-~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~ 915 (941)
.. +..+.+....+.. ....... .....+....+ ..+...+.+.+||.+||+.||++|||++|+
T Consensus 257 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 321 (371)
T 4exu_A 257 -VT----GVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ----------LFPRASPQAADLLEKMLELDVDKRLTAAQA 321 (371)
T ss_dssp -HH----CCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHH----------HSTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred -Hh----CCCcHHHHHHhhhhhhhhhhhccCCCcchhHHH----------hccccChHHHHHHHHHCCCChhhcCCHHHH
Confidence 00 0111111110000 0000001 11111222221 223445566789999999999999999999
Q ss_pred CCCCCCCCC
Q 002289 916 LKHPYVSSD 924 (941)
Q Consensus 916 L~Hpwf~~~ 924 (941)
|+||||+.-
T Consensus 322 l~hp~f~~~ 330 (371)
T 4exu_A 322 LTHPFFEPF 330 (371)
T ss_dssp HTSGGGTTT
T ss_pred hcCcccccC
Confidence 999999764
No 175
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=7.9e-39 Score=364.95 Aligned_cols=281 Identities=23% Similarity=0.337 Sum_probs=202.7
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCC------cEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------EQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~------~~~ 681 (941)
..+|++.+.||+|+||+||+|+..++..||+|++.... ....+|+++++.++||||+++++++...+ ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 45788999999999999999998777779999876432 22347999999999999999999985433 378
Q ss_pred EEEecCCCCCHHHHHh--hcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-CCCcEEEeeecccc
Q 002289 682 LVYEFMSNGTLRDQLS--AKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD-HKFTAKVADFGLSR 758 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~-~~~~~kl~DFGla~ 758 (941)
+||||+++ ++.+.+. ......+++..++.++.||++||+|||+++ |+||||||+|||++ .++.+||+|||+|+
T Consensus 115 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 115 LVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp EEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 99999976 4444433 123456899999999999999999999999 99999999999999 79999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||..............
T Consensus 191 ~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~------ 256 (394)
T 4e7w_A 191 ILIAGE--------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIK------ 256 (394)
T ss_dssp ECCTTC--------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH------
T ss_pred cccCCC--------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH------
Confidence 653321 22345689999999999765 589999999999999999999999976554322211110
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 838 SVIDGNMGSYPSECVEKFIKLALKCCQDETDARPS-MSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs-~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
. .+..+.+....... ...-..-|..++. .... ..+...+.+.+||.+||+.||++|||+.|+|
T Consensus 257 -~----~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 320 (394)
T 4e7w_A 257 -V----LGTPSREQIKTMNP--NYMEHKFPQIRPHPFSKV---------FRPRTPPDAIDLISRLLEYTPSARLTAIEAL 320 (394)
T ss_dssp -H----HCCCCHHHHHHHCG--GGSSSCCCCCCCCCHHHH---------SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred -H----hCCCCHHHHHhhCh--hhhhhccccccCCcHHHh---------ccccCCHHHHHHHHHHhCCChhhCCCHHHHh
Confidence 0 01111111110000 0000111121221 1110 1122445567899999999999999999999
Q ss_pred CCCCCCCCCC
Q 002289 917 KHPYVSSDVS 926 (941)
Q Consensus 917 ~Hpwf~~~~~ 926 (941)
+||||+.-..
T Consensus 321 ~hp~f~~~~~ 330 (394)
T 4e7w_A 321 CHPFFDELRT 330 (394)
T ss_dssp TSGGGSTTTS
T ss_pred cChhhhhhcc
Confidence 9999986544
No 176
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.3e-38 Score=347.92 Aligned_cols=263 Identities=26% Similarity=0.380 Sum_probs=212.2
Q ss_pred HHHhcCCCccc-eeeccCcEEEEEEEe---CCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCC
Q 002289 605 ALATNNFNSST-QIGQGGYGKVYKGIL---PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 678 (941)
Q Consensus 605 ~~~~~~y~~~~-~lG~G~fg~Vy~~~~---~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~ 678 (941)
....++|.+.+ .||+|+||+||+|.+ .+++.||||+++.... ...+.+.+|+++++.++||||+++++++ ..+
T Consensus 12 ~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~ 90 (291)
T 1xbb_A 12 YLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAE 90 (291)
T ss_dssp BCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESS
T ss_pred eecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCC
Confidence 33456788887 999999999999964 2478999999875432 2246789999999999999999999999 567
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 91 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 165 (291)
T 1xbb_A 91 SWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSK 165 (291)
T ss_dssp SEEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred CcEEEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcce
Confidence 8899999999999999997643 4889999999999999999999999 9999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
........ ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||........ ..
T Consensus 166 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~-~~--------- 231 (291)
T 1xbb_A 166 ALRADENY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV-TA--------- 231 (291)
T ss_dssp ECCTTCSE----EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-HH---------
T ss_pred eeccCCCc----ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HH---------
Confidence 76432211 111223346788999999999889999999999999999999 9999976543211 11
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 838 SVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
.+..+.....+..++..+.+++..||+.+|.+||++.++++.|+++....
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 232 MLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp HHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 11222334456677788999999999999999999999999999887643
No 177
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.2e-38 Score=345.77 Aligned_cols=256 Identities=26% Similarity=0.428 Sum_probs=199.3
Q ss_pred cCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeecccc----CCcEE
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQM 681 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~----~~~~~ 681 (941)
..|.+.+.||+|+||+||+|.+. ++..||+|++.... ....+.+.+|++++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 34777889999999999999975 68899999987532 2334678999999999999999999998754 35689
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-CCCcEEEeeecccccc
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD-HKFTAKVADFGLSRLA 760 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~-~~~~~kl~DFGla~~~ 760 (941)
+||||+++|+|.+++.... .+++..++.++.|++.||+|||+.+ ++|+||||||+||+++ .++.+||+|||++...
T Consensus 106 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~ 182 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred EEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence 9999999999999997643 4889999999999999999999875 4599999999999998 7899999999999754
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
... ......||+.|+|||++. +.++.++||||+||++|||++|+.||....+..........
T Consensus 183 ~~~---------~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-------- 244 (290)
T 1t4h_A 183 RAS---------FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS-------- 244 (290)
T ss_dssp CTT---------SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTT--------
T ss_pred ccc---------ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhc--------
Confidence 321 223456899999999886 45899999999999999999999999764443222211100
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPY 920 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpw 920 (941)
+.. +.. ......+...++|.+||..||++|||++|+|+|||
T Consensus 245 -~~~---~~~-----------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 285 (290)
T 1t4h_A 245 -GVK---PAS-----------------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp -TCC---CGG-----------------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred -cCC---ccc-----------------------------------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCcc
Confidence 000 000 00001112346788899999999999999999999
Q ss_pred CCCC
Q 002289 921 VSSD 924 (941)
Q Consensus 921 f~~~ 924 (941)
|+++
T Consensus 286 f~~~ 289 (290)
T 1t4h_A 286 FQEE 289 (290)
T ss_dssp GC--
T ss_pred cccC
Confidence 9875
No 178
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=1e-38 Score=346.17 Aligned_cols=254 Identities=30% Similarity=0.451 Sum_probs=205.2
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecccc-CCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-EGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~LV~e 685 (941)
..++|++.+.||+|+||+||+|.. +|+.||||+++... ..+.+.+|++++++++||||+++++++.. .+..++|||
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e 95 (278)
T 1byg_A 19 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 95 (278)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred ChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence 356889999999999999999987 48899999987543 34678999999999999999999998754 457899999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++|+|.+++.......+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-- 170 (278)
T 1byg_A 96 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 170 (278)
T ss_dssp CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred cCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeecccccccccc--
Confidence 999999999997654444788999999999999999999999 999999999999999999999999998754321
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.....++..|+|||.+.+..++.++||||||+++|||++ |+.||....... .. ..+..+..
T Consensus 171 --------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~-~~---------~~~~~~~~ 232 (278)
T 1byg_A 171 --------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-VV---------PRVEKGYK 232 (278)
T ss_dssp -------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG-HH---------HHHTTTCC
T ss_pred --------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH-HH---------HHHhcCCC
Confidence 122356889999999999999999999999999999998 999997543211 11 11112223
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
...+..++..+.+++..||+.+|.+||++.++++.|+.+...
T Consensus 233 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 233 MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 345566778899999999999999999999999999988653
No 179
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.4e-38 Score=353.35 Aligned_cols=287 Identities=24% Similarity=0.333 Sum_probs=211.7
Q ss_pred HhcCCCccceeeccCcEEEEEEEe--CCCcEEEEEEeccCCch--hhHhHHHHHHHHHhc---CCCceeeeeeccc----
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL--PDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRL---HHRNLVSLVGYCD---- 675 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~--~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l---~h~nIv~l~~~~~---- 675 (941)
..++|++.+.||+|+||.||+|.. .+|+.||+|+++..... ....+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999997 36889999998643221 234577888887776 8999999999986
Q ss_pred -cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeee
Q 002289 676 -EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADF 754 (941)
Q Consensus 676 -~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DF 754 (941)
.....++||||++ |+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEecC
Confidence 5567899999996 69999998776667999999999999999999999999 999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhc
Q 002289 755 GLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSS 834 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~ 834 (941)
|+++.... ........||..|+|||++.+..++.++|||||||++|||++|+.||.................
T Consensus 165 g~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~ 236 (326)
T 1blx_A 165 GLARIYSF--------QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG 236 (326)
T ss_dssp CSCCCCCG--------GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred cccccccC--------CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcC
Confidence 99976432 1223445689999999999999999999999999999999999999976544221111100000
Q ss_pred cc-hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCc
Q 002289 835 MM-FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSS 913 (941)
Q Consensus 835 ~~-~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~ 913 (941)
.. ...... ....+. ..+. ....+. +....+..+....+||.+||..||++|||++
T Consensus 237 ~~~~~~~~~-~~~~~~-----------~~~~--~~~~~~----------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 292 (326)
T 1blx_A 237 LPGEEDWPR-DVALPR-----------QAFH--SKSAQP----------IEKFVTDIDELGKDLLLKCLTFNPAKRISAY 292 (326)
T ss_dssp CCCGGGSCT-TCSSCG-----------GGSC--CCCCCC----------GGGTCCSCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCcccCcc-ccccch-----------hhhc--ccCcch----------hhhccccCCHHHHHHHHHHcCCCcccCCCHH
Confidence 00 000000 000000 0000 000000 1111223334456899999999999999999
Q ss_pred cCCCCCCCCCCCCCCc
Q 002289 914 SMLKHPYVSSDVSGSN 929 (941)
Q Consensus 914 e~L~Hpwf~~~~~~~~ 929 (941)
|+|+||||+.......
T Consensus 293 e~l~hp~~~~~~~~~~ 308 (326)
T 1blx_A 293 SALSHPYFQDLERCKE 308 (326)
T ss_dssp HHHTSGGGTTCCCCCC
T ss_pred HHhcCccccccchhhh
Confidence 9999999987655433
No 180
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=8.2e-39 Score=376.04 Aligned_cols=256 Identities=24% Similarity=0.388 Sum_probs=199.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||+||+|+.. ++..||+|++..... .....+.+|+++++.++||||+++++++.+.+..++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 467999999999999999999975 689999999875432 23467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl~DFGla~~~~ 761 (941)
||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++. ++.+||+|||+++...
T Consensus 116 e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred ecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 9999999999886653 4889999999999999999999999 999999999999976 4559999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. .......||+.|+|||++. ..++.++||||+||++|||++|+.||....... ....
T Consensus 191 ~~--------~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~------------ 248 (494)
T 3lij_A 191 NQ--------KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE-ILRK------------ 248 (494)
T ss_dssp TT--------BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHH------------
T ss_pred CC--------ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHH------------
Confidence 32 1233456999999999886 568999999999999999999999997543211 1000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
+........+ |. +....+.+.+||.+||+.||++|||++|+|+||||
T Consensus 249 ----------------i~~~~~~~~~---~~--------------~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~ 295 (494)
T 3lij_A 249 ----------------VEKGKYTFDS---PE--------------WKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWI 295 (494)
T ss_dssp ----------------HHHTCCCCCS---GG--------------GTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHH
T ss_pred ----------------HHhCCCCCCc---hh--------------cccCCHHHHHHHHHHCCCChhhCccHHHHhcCccc
Confidence 0000000000 00 01112234478888999999999999999999999
Q ss_pred CC
Q 002289 922 SS 923 (941)
Q Consensus 922 ~~ 923 (941)
+.
T Consensus 296 ~~ 297 (494)
T 3lij_A 296 KE 297 (494)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 181
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.8e-38 Score=356.61 Aligned_cols=293 Identities=22% Similarity=0.289 Sum_probs=209.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccC-----CcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-----~~~ 680 (941)
.++|++.+.||+|+||.||+|... +|+.||||++..... .....+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999975 689999999975432 2345788999999999999999999987653 678
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||++ |+|.+++... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARII 162 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEeccccccc
Confidence 99999996 6999998653 4899999999999999999999999 999999999999999999999999999876
Q ss_pred CCCCCCCcc---ccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 761 PVPDIEGIV---PAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 761 ~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
......... .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...................
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (353)
T 2b9h_A 163 DESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTP 242 (353)
T ss_dssp C----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred ccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCC
Confidence 432211100 0111234568999999998765 778999999999999999999999997654322111110000000
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCC-CCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDA-RPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSM 915 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~-RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~ 915 (941)
. .+.......... ..+.+. ..|.. +.... ...+...+...+||.+||..||++|||++|+
T Consensus 243 ~--~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 303 (353)
T 2b9h_A 243 H--SDNDLRCIESPR---AREYIK----SLPMYPAAPLE----------KMFPRVNPKGIDLLQRMLVFDPAKRITAKEA 303 (353)
T ss_dssp C--STTTTTTCCCHH---HHHHHH----TSCCCCCCCHH----------HHSTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred c--hhccccccccch---hhHHhh----cccCCCCcchh----------hhcccCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 0 000000000111 111111 01110 11111 1223444556789999999999999999999
Q ss_pred CCCCCCCCCCC
Q 002289 916 LKHPYVSSDVS 926 (941)
Q Consensus 916 L~Hpwf~~~~~ 926 (941)
|+||||+....
T Consensus 304 l~hp~~~~~~~ 314 (353)
T 2b9h_A 304 LEHPYLQTYHD 314 (353)
T ss_dssp HTSGGGTTTCC
T ss_pred hcCccccccCC
Confidence 99999977544
No 182
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.9e-38 Score=342.53 Aligned_cols=264 Identities=26% Similarity=0.383 Sum_probs=212.2
Q ss_pred CCCccceeeccCcEEEEEEEeC-C---CcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE-EEE
Q 002289 610 NFNSSTQIGQGGYGKVYKGILP-D---GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ-MLV 683 (941)
Q Consensus 610 ~y~~~~~lG~G~fg~Vy~~~~~-~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~-~LV 683 (941)
.|...+.||+|+||+||+|.+. + +..||+|++..... ...+.+.+|++++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4556789999999999999853 2 33799999876433 3356789999999999999999999999766655 999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+.+|+|.+++... ...+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.....
T Consensus 102 ~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 177 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDILDR 177 (298)
T ss_dssp ECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred EecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence 9999999999999653 346899999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
.. ..........+|+.|+|||.+.+..++.++|||||||++|||++|..|+....+....... +....
T Consensus 178 ~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~---------~~~~~ 245 (298)
T 3pls_A 178 EY---YSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHF---------LAQGR 245 (298)
T ss_dssp GG---GCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHH---------HHTTC
T ss_pred cc---cccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHH---------hhcCC
Confidence 11 1112233456788999999999999999999999999999999976666544332221111 11222
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
....+..++..+.+++..|++.+|.+||++.++++.|+++...+..
T Consensus 246 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 246 RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 2334556677899999999999999999999999999998876654
No 183
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=9.6e-39 Score=376.45 Aligned_cols=259 Identities=25% Similarity=0.359 Sum_probs=204.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-------------hhhHhHHHHHHHHHhcCCCceeeeee
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------------QGEKEFLTEIQFLSRLHHRNLVSLVG 672 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~nIv~l~~ 672 (941)
..++|.+.++||+|+||+||+|... +++.||||++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999975 689999999875332 22457889999999999999999999
Q ss_pred ccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC---cE
Q 002289 673 YCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF---TA 749 (941)
Q Consensus 673 ~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~---~~ 749 (941)
++.+.+..++||||+++|+|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++ .+
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccE
Confidence 9999999999999999999999987653 4899999999999999999999999 99999999999998776 69
Q ss_pred EEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 002289 750 KVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNI 829 (941)
Q Consensus 750 kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~ 829 (941)
||+|||+++..... .......||+.|+|||++. ..++.++||||+||++|+|++|+.||...... +....
T Consensus 189 kl~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~ 258 (504)
T 3q5i_A 189 KIVDFGLSSFFSKD--------YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ-DIIKK 258 (504)
T ss_dssp EECCCTTCEECCTT--------SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHH
T ss_pred EEEECCCCEEcCCC--------CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHH
Confidence 99999999865432 1223456999999999986 46899999999999999999999999754321 11100
Q ss_pred HHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCC
Q 002289 830 AYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETP 909 (941)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R 909 (941)
+..+. ..++... +....+.+.+||.+||+.||++|
T Consensus 259 ---------i~~~~-~~~~~~~-----------------------------------~~~~s~~~~~li~~~L~~dp~~R 293 (504)
T 3q5i_A 259 ---------VEKGK-YYFDFND-----------------------------------WKNISDEAKELIKLMLTYDYNKR 293 (504)
T ss_dssp ---------HHHCC-CCCCHHH-----------------------------------HTTSCHHHHHHHHHHTCSSTTTS
T ss_pred ---------HHcCC-CCCCccc-----------------------------------cCCCCHHHHHHHHHHcCCChhHC
Confidence 00000 0011000 01223344578999999999999
Q ss_pred CCCccCCCCCCCCCCC
Q 002289 910 PSSSSMLKHPYVSSDV 925 (941)
Q Consensus 910 ~sa~e~L~Hpwf~~~~ 925 (941)
||++|+|+||||+...
T Consensus 294 ~t~~e~l~h~~~~~~~ 309 (504)
T 3q5i_A 294 CTAEEALNSRWIKKYA 309 (504)
T ss_dssp CCHHHHHTSHHHHHTC
T ss_pred CCHHHHhcCHhhhhch
Confidence 9999999999997643
No 184
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.8e-38 Score=344.94 Aligned_cols=251 Identities=27% Similarity=0.412 Sum_probs=208.3
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecccc---------
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--------- 676 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~--------- 676 (941)
..++|++.+.||+|+||.||+|.+. +++.||+|+++... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3567899999999999999999976 79999999987543 367899999999999999999998743
Q ss_pred -------CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcE
Q 002289 677 -------EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTA 749 (941)
Q Consensus 677 -------~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~ 749 (941)
....++||||+++|+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCE
Confidence 445799999999999999998765567999999999999999999999999 9999999999999999999
Q ss_pred EEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 002289 750 KVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNI 829 (941)
Q Consensus 750 kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~ 829 (941)
||+|||++....... ......||+.|+|||++.+..++.++||||||+++|||++|..|+........
T Consensus 162 kl~Dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~---- 229 (284)
T 2a19_B 162 KIGDFGLVTSLKNDG--------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFT---- 229 (284)
T ss_dssp EECCCTTCEESSCCS--------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHH----
T ss_pred EECcchhheeccccc--------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHH----
Confidence 999999998654321 12334589999999999999999999999999999999999988742211110
Q ss_pred HHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 830 AYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
.+... ..+..++..+.+++..|++.+|.+||++.++++.++.+.+..
T Consensus 230 --------~~~~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 230 --------DLRDG---IISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp --------HHHTT---CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred --------Hhhcc---cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 11111 123344567889999999999999999999999999876543
No 185
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.6e-38 Score=357.99 Aligned_cols=295 Identities=22% Similarity=0.274 Sum_probs=199.3
Q ss_pred HHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCc-
Q 002289 602 GEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE- 679 (941)
Q Consensus 602 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~- 679 (941)
.+.....++|++.+.||+|+||+||+|+.. +|+.||||++.... .....+.+|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 345567789999999999999999999975 68999999886532 223456788888999999999999999855433
Q ss_pred ------EEEEEecCCCCCHHHHHhh--cCCCCccHHHHHHHHHHHHHHHHHhh--cCCCCCeEeccCCCCcEEEcC-CCc
Q 002289 680 ------QMLVYEFMSNGTLRDQLSA--KSKEPLGFAMRLSIALGSSRGILYLH--TEADPPVFHRDIKASNILLDH-KFT 748 (941)
Q Consensus 680 ------~~LV~e~~~~gsL~~~l~~--~~~~~l~~~~~~~i~~~ia~gL~yLH--~~~~~~ivH~DLkp~NILl~~-~~~ 748 (941)
.++||||+++ +|.+.+.. .....+++..++.++.|++.||.||| +++ |+||||||+|||++. ++.
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~~ 170 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADGT 170 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTTE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCCc
Confidence 7899999965 66555442 23456889999999999999999999 888 999999999999997 899
Q ss_pred EEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCC-CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHH
Q 002289 749 AKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHK-LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREV 827 (941)
Q Consensus 749 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~ 827 (941)
+||+|||+++...... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||..........
T Consensus 171 ~kl~Dfg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 242 (360)
T 3e3p_A 171 LKLCDFGSAKKLSPSE--------PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLH 242 (360)
T ss_dssp EEECCCTTCBCCCTTS--------CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred EEEeeCCCceecCCCC--------CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHH
Confidence 9999999998654321 223456899999999997654 8999999999999999999999997654422211
Q ss_pred HHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCC
Q 002289 828 NIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEE 907 (941)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~ 907 (941)
... . . .+..+.+....+..-. .........+.....+. ........+.+.+||.+||+.||+
T Consensus 243 ~~~-~------~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~L~~dP~ 304 (360)
T 3e3p_A 243 EIV-R------V----LGCPSREVLRKLNPSH-TDVDLYNSKGIPWSNVF------SDHSLKDAKEAYDLLSALLQYLPE 304 (360)
T ss_dssp HHH-H------H----HCCCCHHHHHHHCTTC-CCGGGGCCCCCCHHHHT------TTCCCTTHHHHHHHHHHHTCSSGG
T ss_pred HHH-H------H----cCCCCHHHHHhcccch-hhccccccccCCccccc------chhhccccHHHHHHHHHHhccCcc
Confidence 110 0 0 0111111111110000 00000000111111110 001111223456899999999999
Q ss_pred CCCCCccCCCCCCCCCCCCC
Q 002289 908 TPPSSSSMLKHPYVSSDVSG 927 (941)
Q Consensus 908 ~R~sa~e~L~Hpwf~~~~~~ 927 (941)
+|||++|+|+||||++....
T Consensus 305 ~Rpt~~e~l~hp~f~~~~~~ 324 (360)
T 3e3p_A 305 ERMKPYEALCHPYFDELHDP 324 (360)
T ss_dssp GSCCHHHHTTSGGGGGGGCT
T ss_pred ccCCHHHHhcCccccccCCc
Confidence 99999999999999875543
No 186
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2.2e-38 Score=343.77 Aligned_cols=200 Identities=30% Similarity=0.465 Sum_probs=173.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||+||+|... +++.||||++...... ....+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 467899999999999999999965 5789999998643221 245688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp ECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 99999999999997653 4889999999999999999999999 999999999999999999999999998654321
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
......||+.|+|||.+.+..++.++||||+|+++|||++|+.||....
T Consensus 163 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 211 (279)
T 3fdn_A 163 ---------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT 211 (279)
T ss_dssp --------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred ---------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc
Confidence 1234568999999999999999999999999999999999999997543
No 187
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.7e-39 Score=353.66 Aligned_cols=285 Identities=22% Similarity=0.366 Sum_probs=205.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccc-----------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCD----------- 675 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~----------- 675 (941)
.++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 468999999999999999999976 58999999998766666678999999999999999999998873
Q ss_pred ---cCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-CCCcEEE
Q 002289 676 ---EEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD-HKFTAKV 751 (941)
Q Consensus 676 ---~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~-~~~~~kl 751 (941)
..+..++||||++ |+|.+++.. ..+++..++.++.|+++||+|||+++ |+||||||+||+++ +++.+||
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEE
Confidence 3467899999996 699999954 35889999999999999999999999 99999999999997 5679999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHH
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA 830 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~ 830 (941)
+|||+++....... .........+|..|+|||.+.+ ..++.++|||||||++|||++|+.||........ ....
T Consensus 163 ~Dfg~~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~~ 237 (320)
T 2i6l_A 163 GDFGLARIMDPHYS----HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQ-MQLI 237 (320)
T ss_dssp CCCTTCBCC------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHH
T ss_pred ccCccccccCCCcc----cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHH-HHHH
Confidence 99999986542211 0112234457899999999876 6789999999999999999999999976554221 1111
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccC-CCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCC
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDE-TDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETP 909 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~-p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R 909 (941)
.. ..+....+...++...+......+ ...+.... ...+.......+||.+||..||++|
T Consensus 238 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~li~~~L~~dP~~R 297 (320)
T 2i6l_A 238 LE----------SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLT----------QLLPGISREAVDFLEQILTFSPMDR 297 (320)
T ss_dssp HH----------HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHH----------HHSTTCCHHHHHHHHTTSCSSGGGS
T ss_pred HH----------hcCCCchhhhhhhhhcCcccccccccCCCCChh----------HhcchhhHHHHHHHHHHcCCCcccc
Confidence 10 111122222222211110000000 00111111 1123344556789999999999999
Q ss_pred CCCccCCCCCCCCCC
Q 002289 910 PSSSSMLKHPYVSSD 924 (941)
Q Consensus 910 ~sa~e~L~Hpwf~~~ 924 (941)
||++|+|+||||+..
T Consensus 298 pt~~ell~hp~~~~~ 312 (320)
T 2i6l_A 298 LTAEEALSHPYMSIY 312 (320)
T ss_dssp CCHHHHHTSHHHHTT
T ss_pred CCHHHHhCCcccccc
Confidence 999999999999763
No 188
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=3.5e-39 Score=378.52 Aligned_cols=259 Identities=24% Similarity=0.395 Sum_probs=207.4
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
..++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 3467999999999999999999975 78999999986543 2235678999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccc
Q 002289 683 VYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRL 759 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~ 759 (941)
||||+++|+|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+|||+ +.++.+||+|||+++.
T Consensus 104 v~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 104 VGEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp EECCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 999999999999986543 5899999999999999999999999 9999999999999 5678999999999986
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... .......||+.|+|||++.+ .++.++||||+||++|||++|+.||....... .... +
T Consensus 179 ~~~~--------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~---------i 239 (484)
T 3nyv_A 179 FEAS--------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD-ILKK---------V 239 (484)
T ss_dssp BCCC--------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHH---------H
T ss_pred cccc--------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH-HHHH---------H
Confidence 5432 12234569999999999876 68999999999999999999999997543311 1100 0
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCC
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHP 919 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hp 919 (941)
..+... + ..|.. ....+.+.+||.+||+.||++|||++|+|+||
T Consensus 240 ~~~~~~-~---------------------~~~~~--------------~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~ 283 (484)
T 3nyv_A 240 EKGKYT-F---------------------ELPQW--------------KKVSESAKDLIRKMLTYVPSMRISARDALDHE 283 (484)
T ss_dssp HHCCCC-C---------------------CSGGG--------------GGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred HcCCCC-C---------------------CCccc--------------ccCCHHHHHHHHHHCCCChhHCcCHHHHhhCh
Confidence 000000 0 00000 11122345789999999999999999999999
Q ss_pred CCCCCC
Q 002289 920 YVSSDV 925 (941)
Q Consensus 920 wf~~~~ 925 (941)
||+...
T Consensus 284 ~~~~~~ 289 (484)
T 3nyv_A 284 WIQTYT 289 (484)
T ss_dssp HHHHHT
T ss_pred hhcccc
Confidence 997643
No 189
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=8.9e-39 Score=350.87 Aligned_cols=262 Identities=24% Similarity=0.392 Sum_probs=202.3
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|+++++.++||||+++++++...+..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3578999999999999999999976 589999999886655556789999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++++|.+++.... ..+++..++.++.|++.||.|||+.+ |+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-- 170 (302)
T ss_dssp CCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--
T ss_pred eCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999986533 35899999999999999999999999 999999999999999999999999987532110
Q ss_pred CCccccccccccccCCCcccccccc-----cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFL-----THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
........||..|+|||++. +..++.++||||||+++|||++|+.||...........
T Consensus 171 -----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~------------ 233 (302)
T 2j7t_A 171 -----LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLK------------ 233 (302)
T ss_dssp -----HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH------------
T ss_pred -----ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHH------------
Confidence 11123346899999999984 66789999999999999999999999965432111000
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPY 920 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpw 920 (941)
+.. ..+...+... .......+++.+||..||++|||++|+++|||
T Consensus 234 -----------------~~~----~~~~~~~~~~--------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~ 278 (302)
T 2j7t_A 234 -----------------IAK----SDPPTLLTPS--------------KWSVEFRDFLKIALDKNPETRPSAAQLLEHPF 278 (302)
T ss_dssp -----------------HHH----SCCCCCSSGG--------------GSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTT
T ss_pred -----------------Hhc----cCCcccCCcc--------------ccCHHHHHHHHHHcccChhhCCCHHHHhcChH
Confidence 000 0000000000 01112336788889999999999999999999
Q ss_pred CCCCCC
Q 002289 921 VSSDVS 926 (941)
Q Consensus 921 f~~~~~ 926 (941)
|++...
T Consensus 279 ~~~~~~ 284 (302)
T 2j7t_A 279 VSSITS 284 (302)
T ss_dssp TTTCCC
T ss_pred Hhhhcc
Confidence 987554
No 190
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.4e-40 Score=375.48 Aligned_cols=247 Identities=14% Similarity=0.144 Sum_probs=189.5
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccC---CchhhHhHHHHH---HHHHhcCCCceeeee-------ec
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEI---QFLSRLHHRNLVSLV-------GY 673 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~nIv~l~-------~~ 673 (941)
.++|++.+.||+|+||+||+|++ .+|+.||||++... .....+.+.+|+ +++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 56788999999999999999996 46999999998743 233456789999 455566899999998 44
Q ss_pred cccCC-----------------cEEEEEecCCCCCHHHHHhhcC-----CCCccHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 002289 674 CDEEG-----------------EQMLVYEFMSNGTLRDQLSAKS-----KEPLGFAMRLSIALGSSRGILYLHTEADPPV 731 (941)
Q Consensus 674 ~~~~~-----------------~~~LV~e~~~~gsL~~~l~~~~-----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i 731 (941)
+...+ ..++||||+ +|+|.+++.... ...+++..++.|+.||++||+|||+++ |
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---L 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT---E
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC---e
Confidence 44332 378999999 689999997532 123556888999999999999999999 9
Q ss_pred EeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccC-----------CCCchhHh
Q 002289 732 FHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-----------KLTDKSDV 800 (941)
Q Consensus 732 vH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sDV 800 (941)
+||||||+|||++.++.+||+|||+|+... .......| +.|+|||++.+. .++.++||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~----------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dv 296 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDA 296 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETT----------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecC----------CcccCCCC-cCccChhhhcccccccccccccccCChhhhH
Confidence 999999999999999999999999998532 12234457 999999999887 89999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 002289 801 YSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMREL 880 (941)
Q Consensus 801 wSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L 880 (941)
|||||++|||++|+.||...... .....+. ...
T Consensus 297 wSlG~il~elltg~~Pf~~~~~~----------~~~~~~~-~~~------------------------------------ 329 (377)
T 3byv_A 297 WALGLVIYWIWCADLPITKDAAL----------GGSEWIF-RSC------------------------------------ 329 (377)
T ss_dssp HHHHHHHHHHHHSSCCC----------------CCSGGGG-SSC------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCcccccc----------cchhhhh-hhc------------------------------------
Confidence 99999999999999999643210 0000110 000
Q ss_pred HHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 881 ESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 881 ~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
+...+...++|.+||..||++|||+.|+++||||++
T Consensus 330 -------~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~ 365 (377)
T 3byv_A 330 -------KNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQ 365 (377)
T ss_dssp -------CCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHH
T ss_pred -------cCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHH
Confidence 111222345777788888999999999999999865
No 191
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=4.6e-39 Score=377.55 Aligned_cols=259 Identities=25% Similarity=0.371 Sum_probs=204.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC--chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||+||+|... +++.||||++.... ......+.+|++++++++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 468999999999999999999975 78999999986422 223467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc---CCCcEEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD---HKFTAKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~---~~~~~kl~DFGla~~~~ 761 (941)
||+++|+|.+.+.... .+++..++.++.|++.||+|||+++ |+||||||+|||++ .++.+||+|||+++...
T Consensus 101 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 9999999999886653 4899999999999999999999999 99999999999995 45689999999998654
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
.. .......||+.|+|||++.+ .++.++||||+||++|||++|+.||....... .... +..
T Consensus 176 ~~--------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~---------i~~ 236 (486)
T 3mwu_A 176 QN--------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKR---------VET 236 (486)
T ss_dssp CC------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHH---------HHH
T ss_pred CC--------CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHH---------HHh
Confidence 32 12234569999999999876 58999999999999999999999997543211 1100 000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCC
Q 002289 842 GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYV 921 (941)
Q Consensus 842 ~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf 921 (941)
+... ...|.. ....+.+.+||.+||+.||++|||+.|+|+||||
T Consensus 237 ~~~~----------------------~~~~~~--------------~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~ 280 (486)
T 3mwu_A 237 GKYA----------------------FDLPQW--------------RTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280 (486)
T ss_dssp TCCC----------------------SCSGGG--------------GGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHH
T ss_pred CCCC----------------------CCCccc--------------CCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhh
Confidence 0000 000100 1112234578899999999999999999999999
Q ss_pred CCCCC
Q 002289 922 SSDVS 926 (941)
Q Consensus 922 ~~~~~ 926 (941)
+....
T Consensus 281 ~~~~~ 285 (486)
T 3mwu_A 281 QKYSS 285 (486)
T ss_dssp HHTCC
T ss_pred ccCcc
Confidence 76544
No 192
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=4e-38 Score=345.01 Aligned_cols=259 Identities=25% Similarity=0.344 Sum_probs=205.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---------hhhHhHHHHHHHHHhcC-CCceeeeeecccc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---------QGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE 676 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~ 676 (941)
.++|++.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+++++++. ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468999999999999999999975 689999999875431 12356789999999995 9999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecc
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGL 756 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGl 756 (941)
.+..++||||+++++|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTT
T ss_pred CCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccc
Confidence 99999999999999999999764 35889999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccc------cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHH
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL------THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA 830 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~ 830 (941)
+....... ......||+.|+|||++. ...++.++||||||+++|||++|+.||........ ..
T Consensus 171 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~-- 239 (298)
T 1phk_A 171 SCQLDPGE--------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLM-LR-- 239 (298)
T ss_dssp CEECCTTC--------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HH--
T ss_pred hhhcCCCc--------ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHH-HH--
Confidence 98654321 123456899999999985 45688999999999999999999999965432111 00
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCC
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPP 910 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ 910 (941)
.+........ .|.. ........+++.+||..||++||
T Consensus 240 --------------------------~~~~~~~~~~---~~~~--------------~~~~~~l~~li~~~l~~dp~~Rp 276 (298)
T 1phk_A 240 --------------------------MIMSGNYQFG---SPEW--------------DDYSDTVKDLVSRFLVVQPQKRY 276 (298)
T ss_dssp --------------------------HHHHTCCCCC---TTTG--------------GGSCHHHHHHHHHHCCSSGGGSC
T ss_pred --------------------------HHhcCCcccC---cccc--------------cccCHHHHHHHHHHccCCcccCC
Confidence 0000000000 0000 00112234688889999999999
Q ss_pred CCccCCCCCCCCCCC
Q 002289 911 SSSSMLKHPYVSSDV 925 (941)
Q Consensus 911 sa~e~L~Hpwf~~~~ 925 (941)
|++|+|+||||+...
T Consensus 277 s~~~ll~h~~~~~~~ 291 (298)
T 1phk_A 277 TAEEALAHPFFQQYV 291 (298)
T ss_dssp CHHHHTTSGGGCTTC
T ss_pred CHHHHHhChHhhhcc
Confidence 999999999998644
No 193
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=350.08 Aligned_cols=269 Identities=26% Similarity=0.433 Sum_probs=215.0
Q ss_pred hcCCCccceeeccCcEEEEEEEe-----CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCC--cE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~--~~ 680 (941)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 46788899999999999999984 368999999998766666678999999999999999999999986544 78
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++++|.+++.... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~~ 195 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 195 (326)
T ss_dssp EEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence 99999999999999997653 45899999999999999999999999 999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh-------h
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ-------S 833 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~-------~ 833 (941)
...... ........++..|+|||.+.+..++.++||||||+++|||++|..||....... ...... .
T Consensus 196 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~--~~~~~~~~~~~~~~ 269 (326)
T 2w1i_A 196 PQDKEY----YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF--MRMIGNDKQGQMIV 269 (326)
T ss_dssp CSSCSE----EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHH--HHHHCTTCCTHHHH
T ss_pred cccccc----cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHH--HHhhccccchhhhH
Confidence 432210 111223456778999999999889999999999999999999999885321110 000000 0
Q ss_pred ccchhh-hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 834 SMMFSV-IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 834 ~~~~~~-~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
..+.+. ........+..++..+.+++..||+.+|.+||++.++++.|+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 270 FHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 001111 12223345667778899999999999999999999999999988654
No 194
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=350.16 Aligned_cols=258 Identities=26% Similarity=0.430 Sum_probs=204.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCc----EEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 681 (941)
.++|++.+.||+|+||+||+|.+. +++ .||+|.+.... ....+.+.+|++++++++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 467899999999999999999964 444 35777775432 334568999999999999999999999998654 88
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
+|+||+++|+|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 93 ~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 9999999999999997643 35899999999999999999999999 9999999999999999999999999998754
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 840 (941)
.... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.......- .. .+.
T Consensus 169 ~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~---------~~~ 233 (327)
T 3lzb_A 169 AEEK-----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SS---------ILE 233 (327)
T ss_dssp ----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HH---------HHH
T ss_pred Cccc-----cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HH---------HHH
Confidence 3221 112233456789999999999999999999999999999999 9999975443211 00 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.......+..++..+.+++..||+.+|.+||++.++++.|+.+..
T Consensus 234 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 234 KGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 222334556677889999999999999999999999999998764
No 195
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=352.19 Aligned_cols=251 Identities=23% Similarity=0.337 Sum_probs=198.7
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCC--CceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++| +||+++++++...+..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 467899999999999999999998899999999875432 234678999999999976 9999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
||+ .+|+|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+|||++ ++.+||+|||+++.....
T Consensus 88 ~e~-~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp ECC-CSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EeC-CCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 995 5889999997653 5889999999999999999999999 99999999999997 678999999999865432
Q ss_pred CCCCccccccccccccCCCccccccccc-----------CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLT-----------HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
.. ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....+.......
T Consensus 161 ~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~--- 232 (343)
T 3dbq_A 161 TT-----SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHA--- 232 (343)
T ss_dssp --------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHH---
T ss_pred cc-----cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHH---
Confidence 11 112334579999999999865 67899999999999999999999999765443222221
Q ss_pred hccchhhhcC-CCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 833 SSMMFSVIDG-NMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 833 ~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.++. ....++......+.+++..|++.+|.+||++.+++++
T Consensus 233 ------~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 233 ------IIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ------HHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ------HhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 1111 1223444445677888889999999999999888765
No 196
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=9.6e-39 Score=357.86 Aligned_cols=268 Identities=18% Similarity=0.180 Sum_probs=201.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCchh-----------hHhHHHHHHHHHhcCCCceeeeee
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQG-----------EKEFLTEIQFLSRLHHRNLVSLVG 672 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~nIv~l~~ 672 (941)
.++|++.+.||+|+||+||+|.+. ++..||||+........ ...+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 467899999999999999999975 57889999987643221 124667888999999999999999
Q ss_pred cccc----CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC-
Q 002289 673 YCDE----EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF- 747 (941)
Q Consensus 673 ~~~~----~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~- 747 (941)
++.. ....++||||+ +++|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSST
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCC
Confidence 9876 67899999999 999999997654 6899999999999999999999999 99999999999999887
Q ss_pred -cEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch-h--
Q 002289 748 -TAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN-I-- 823 (941)
Q Consensus 748 -~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~-~-- 823 (941)
.+||+|||+++....................||+.|+|||++.+..++.++|||||||++|||++|+.||..... .
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 999999999987643221111112223456799999999999999999999999999999999999999954211 1
Q ss_pred HHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 824 VREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
........... ....+.... ....++..+.+++..||+.+|++||++.++++.|+...
T Consensus 270 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 270 VQTAKTNLLDE-LPQSVLKWA--PSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHHHT-TTHHHHHHS--CTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHHhhccc-ccHHHHhhc--cccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 11111111100 000000000 01134568999999999999999999999999988653
No 197
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-37 Score=346.80 Aligned_cols=262 Identities=26% Similarity=0.372 Sum_probs=204.4
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhc--CCCceeeeeeccccC----C
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL--HHRNLVSLVGYCDEE----G 678 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~nIv~l~~~~~~~----~ 678 (941)
....++|++.+.||+|+||.||+|++. ++.||||++... ....+.+|.+++... +||||+++++++... .
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 345678999999999999999999985 899999998642 233455666666554 899999999998766 6
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC--------CCCCeEeccCCCCcEEEcCCCcEE
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE--------ADPPVFHRDIKASNILLDHKFTAK 750 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~--------~~~~ivH~DLkp~NILl~~~~~~k 750 (941)
..++||||+++|+|.++++.. .+++..++.++.|++.||+|||++ + |+||||||+|||++.++.+|
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~k 182 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA---IAHRDLKSKNILVKKNGTCC 182 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC---EECSCCCGGGEEECTTSCEE
T ss_pred ceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---EEecccchHHEEECCCCCEE
Confidence 889999999999999999654 489999999999999999999988 7 99999999999999999999
Q ss_pred EeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCch------hHhHHHHHHHHHHHhC----------C
Q 002289 751 VADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDK------SDVYSLGVVFLELLTG----------M 814 (941)
Q Consensus 751 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------sDVwSlG~ll~elltG----------~ 814 (941)
|+|||+++......... ........||+.|+|||++.+.....+ +|||||||++|||++| +
T Consensus 183 l~Dfg~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~ 259 (337)
T 3mdy_A 183 IADLGLAVKFISDTNEV---DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQ 259 (337)
T ss_dssp ECCCTTCEECC------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred EEeCCCceeeccccccc---cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccccccc
Confidence 99999997654322110 111224569999999999988766654 9999999999999999 6
Q ss_pred CCCCCCch---hHHHHHHHHhhccchhhhcCCCCCCC-----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 815 QPISHGKN---IVREVNIAYQSSMMFSVIDGNMGSYP-----SECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 815 ~Pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
.||..... .......... .......++ .+++..+.+++..||+.+|.+||++.++++.|+.+.+.
T Consensus 260 ~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 260 LPYHDLVPSDPSYEDMREIVC-------IKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp CTTTTTSCSSCCHHHHHHHHT-------TSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ccHhhhcCCCCchhhhHHHHh-------hhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 66643211 1111111110 111122233 37889999999999999999999999999999998764
No 198
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=2.2e-38 Score=345.53 Aligned_cols=259 Identities=21% Similarity=0.319 Sum_probs=189.0
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchh-hH-hHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQG-EK-EFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~-~~-~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||+||+|.. .+|+.||||+++...... .. .+.++...++.++||||+++++++.+.+..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 357899999999999999999997 478999999997643222 22 344455568888999999999999999999999
Q ss_pred EecCCCCCHHHHHhh--cCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 684 YEFMSNGTLRDQLSA--KSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
|||++ |+|.+++.. .....+++..++.++.|++.||+|||++ + |+||||||+||+++.++.+||+|||+++..
T Consensus 85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 99996 699888754 2345699999999999999999999997 8 999999999999999999999999999765
Q ss_pred CCCCCCCccccccccccccCCCccccccc----ccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYF----LTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
.... ......||+.|+|||++ .+..++.++||||+||++|||++|+.||..............
T Consensus 161 ~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~----- 227 (290)
T 3fme_A 161 VDDV--------AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVV----- 227 (290)
T ss_dssp -----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHH-----
T ss_pred cccc--------cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHh-----
Confidence 4321 12334689999999996 556789999999999999999999999975333222111110
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
....... +.. ...+...+++.+||..||++|||++|++
T Consensus 228 ----~~~~~~~-------------------~~~-------------------~~~~~~~~li~~~l~~~p~~Rpt~~e~l 265 (290)
T 3fme_A 228 ----EEPSPQL-------------------PAD-------------------KFSAEFVDFTSQCLKKNSKERPTYPELM 265 (290)
T ss_dssp ----HSCCCCC-------------------CTT-------------------TSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred ----ccCCCCc-------------------ccc-------------------cCCHHHHHHHHHHhhcChhhCcCHHHHH
Confidence 0000000 000 0112234677788899999999999999
Q ss_pred CCCCCCCC
Q 002289 917 KHPYVSSD 924 (941)
Q Consensus 917 ~Hpwf~~~ 924 (941)
+||||+..
T Consensus 266 ~hp~f~~~ 273 (290)
T 3fme_A 266 QHPFFTLH 273 (290)
T ss_dssp TSHHHHHH
T ss_pred hCcccccC
Confidence 99999654
No 199
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=1.1e-38 Score=357.77 Aligned_cols=275 Identities=20% Similarity=0.295 Sum_probs=210.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchh-----------------hHhHHHHHHHHHhcCCCceeee
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQG-----------------EKEFLTEIQFLSRLHHRNLVSL 670 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~nIv~l 670 (941)
.++|++.+.||+|+||.||+|.. +|+.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 89999999987432111 1678999999999999999999
Q ss_pred eeccccCCcEEEEEecCCCCCHHHH------HhhcCCCCccHHHHHHHHHHHHHHHHHhhc-CCCCCeEeccCCCCcEEE
Q 002289 671 VGYCDEEGEQMLVYEFMSNGTLRDQ------LSAKSKEPLGFAMRLSIALGSSRGILYLHT-EADPPVFHRDIKASNILL 743 (941)
Q Consensus 671 ~~~~~~~~~~~LV~e~~~~gsL~~~------l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivH~DLkp~NILl 743 (941)
++++.+.+..++||||+++|+|.++ +.......+++..++.++.|++.||+|||+ .+ |+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEEE
Confidence 9999999999999999999999998 655445679999999999999999999998 88 9999999999999
Q ss_pred cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccC-CCCc-hhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 744 DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH-KLTD-KSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 744 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
+.++.+||+|||.+...... ......||..|+|||++.+. .++. ++|||||||++|||++|+.||....
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 256 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI 256 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cCCCcEEEeccccccccccc---------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999865321 23345689999999999887 6666 9999999999999999999997654
Q ss_pred hhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCccccccc
Q 002289 822 NIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSE 901 (941)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~ 901 (941)
...+...... .+ ...++..... .. .+...... ............+|+.+|
T Consensus 257 ~~~~~~~~i~---------~~-~~~~~~~~~~--------~~--~~~~~~~~----------~~~~~~~~~~l~~li~~~ 306 (348)
T 2pml_X 257 SLVELFNNIR---------TK-NIEYPLDRNH--------FL--YPLTNKKS----------TCSNNFLSNEDIDFLKLF 306 (348)
T ss_dssp CSHHHHHHHT---------SC-CCCCCCSSSS--------ST--TTTCC------------------CCCHHHHHHHHHH
T ss_pred cHHHHHHHHh---------cc-CcCCccchhh--------hh--cccccccc----------ccchhhcCHHHHHHHHHH
Confidence 4222221111 00 0011100000 00 00000000 000122233446799999
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCC
Q 002289 902 HTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 902 L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
|..||++|||++|+++||||+...
T Consensus 307 L~~dP~~Rps~~e~l~hp~f~~~~ 330 (348)
T 2pml_X 307 LRKNPAERITSEDALKHEWLADTN 330 (348)
T ss_dssp CCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred ccCChhhCCCHHHHhcCccccCCC
Confidence 999999999999999999998743
No 200
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=348.40 Aligned_cols=274 Identities=24% Similarity=0.395 Sum_probs=201.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHH--HHhcCCCceeeeeecc-----ccCCc
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQF--LSRLHHRNLVSLVGYC-----DEEGE 679 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~nIv~l~~~~-----~~~~~ 679 (941)
..++|++.+.||+|+||+||+|+. +++.||||++.... ...+..|.++ ++.++|+||+++++++ .....
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 356889999999999999999987 68999999987432 2344444444 4558999999999744 33346
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC---------CCCCeEeccCCCCcEEEcCCCcEE
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE---------ADPPVFHRDIKASNILLDHKFTAK 750 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~---------~~~~ivH~DLkp~NILl~~~~~~k 750 (941)
.++||||+++|+|.+++.... .++..++.++.|+++||+|||+. + |+||||||+|||++.++.+|
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~k 160 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTCV 160 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCEE
T ss_pred EEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcEE
Confidence 789999999999999996543 58889999999999999999998 7 99999999999999999999
Q ss_pred EeeeccccccCCCCCCCc-cccccccccccCCCccccccccc-------CCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 751 VADFGLSRLAPVPDIEGI-VPAHVSTVVKGTPGYLDPEYFLT-------HKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 751 l~DFGla~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
|+|||+++.......... ..........||+.|+|||++.+ ..++.++|||||||++|||++|..||.....
T Consensus 161 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~ 240 (336)
T 3g2f_A 161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGES 240 (336)
T ss_dssp ECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred EeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence 999999987643321110 11122334569999999999987 4566789999999999999999888754322
Q ss_pred hHH---HHHHHHhh----ccchhhh--cCCCCCC------ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 823 IVR---EVNIAYQS----SMMFSVI--DGNMGSY------PSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 823 ~~~---~~~~~~~~----~~~~~~~--~~~~~~~------~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
... ........ ..+.... ....+.+ ...++..+.+++.+||+.+|++||++.++++.|+++...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~ 320 (336)
T 3g2f_A 241 VPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW 320 (336)
T ss_dssp CCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred hhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence 100 00000000 0000000 1111122 2357778999999999999999999999999999998766
Q ss_pred CCC
Q 002289 888 PES 890 (941)
Q Consensus 888 ~~~ 890 (941)
...
T Consensus 321 ~~~ 323 (336)
T 3g2f_A 321 ERN 323 (336)
T ss_dssp CC-
T ss_pred Hhc
Confidence 543
No 201
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.7e-38 Score=356.74 Aligned_cols=290 Identities=19% Similarity=0.290 Sum_probs=209.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CC-cEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc------eeeeeeccccCCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DG-TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~ 679 (941)
.++|++.+.||+|+||+||+|... ++ +.||+|+++.. ....+.+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 578999999999999999999974 34 78999999753 334567889999999997665 8999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE----------------
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---------------- 743 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---------------- 743 (941)
.++||||+ ++++.+++.......+++..++.++.||+.||+|||+++ |+||||||+|||+
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 778888887766567999999999999999999999999 9999999999999
Q ss_pred ---cCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 744 ---DHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 744 ---~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 242 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH----------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH 242 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccCCCcEEEeecCcccccccc----------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence 56789999999999764321 23456899999999999999999999999999999999999999765
Q ss_pred chhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh----hCCC---CCCC
Q 002289 821 KNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN----MMPE---SDTK 893 (941)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~----~~~~---~~~~ 893 (941)
.......... .. .+..|.........- ..+.......+........+..... .... ....
T Consensus 243 ~~~~~~~~~~-------~~----~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 2eu9_A 243 ENREHLVMME-------KI----LGPIPSHMIHRTRKQ--KYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQ 309 (355)
T ss_dssp SHHHHHHHHH-------HH----HCCCCHHHHHHCSCG--GGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred CHHHHHHHHH-------HH----cCCCcHHHhhhccch--hhhcccccccccccchhccccccCCcccccccccchhHHH
Confidence 4422111110 00 112222221110000 0000000000000000001110000 0000 0113
Q ss_pred CcccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 894 TPEFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 894 ~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
+.+||.+||..||++|||++|+|+||||++..
T Consensus 310 l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 341 (355)
T 2eu9_A 310 LFDLMRRMLEFDPAQRITLAEALLHPFFAGLT 341 (355)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCC
T ss_pred HHHHHHHHhcCChhhCcCHHHHhcChhhcCCC
Confidence 45799999999999999999999999998743
No 202
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=5.4e-38 Score=343.36 Aligned_cols=270 Identities=19% Similarity=0.286 Sum_probs=207.6
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecc-ccCCcEEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQMLVY 684 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~-~~~~~~~LV~ 684 (941)
..++|++.+.||+|+||+||+|+. .+++.||||++.... ..+.+.+|+++++.++|++++..++++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999996 578999999876532 234688999999999988877666665 6667889999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccccC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~~ 761 (941)
||+ +++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+|||+ +.++.+||+|||+++...
T Consensus 85 e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~ 159 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp ECC-CCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred Ecc-CCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence 999 999999997533 35899999999999999999999999 9999999999999 788999999999998765
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchh--HHHHHHHHhhccchhh
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNI--VREVNIAYQSSMMFSV 839 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~--~~~~~~~~~~~~~~~~ 839 (941)
........+........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .......... .
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~---- 234 (296)
T 4hgt_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK-K---- 234 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH-H----
T ss_pred CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc-c----
Confidence 44322222222334567999999999999999999999999999999999999999753221 0111000000 0
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
...........++..+.+++..||+.+|++||++.++++.|+++.....
T Consensus 235 ~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 235 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp HHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 0000000112235688999999999999999999999999999877543
No 203
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.4e-37 Score=342.91 Aligned_cols=263 Identities=23% Similarity=0.357 Sum_probs=203.5
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|.. .+|+.||||+++... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 35788999999999999999996 478999999987532 23346789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhh--cCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccC
Q 002289 684 YEFMSNGTLRDQLSA--KSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAP 761 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~ 761 (941)
|||+++|+|.+++.. .....+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999864 23456899999999999999999999999 9999999999999999999999999997653
Q ss_pred CCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhc
Q 002289 762 VPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVID 841 (941)
Q Consensus 762 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 841 (941)
... .......|+..|+|||++.+..++.++||||||+++|||++|+.||.............. ..
T Consensus 188 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~--------~~ 252 (310)
T 2wqm_A 188 SKT-------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKI--------EQ 252 (310)
T ss_dssp ------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHH--------HT
T ss_pred CCC-------ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHh--------hc
Confidence 221 112334689999999999999999999999999999999999999975432211111111 11
Q ss_pred CCCCC-CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 842 GNMGS-YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 842 ~~~~~-~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
..... .+..++..+.+++..||+.+|.+||++.++++.++++.....
T Consensus 253 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 253 CDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp TCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 11122 224556789999999999999999999999999998876543
No 204
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.3e-37 Score=340.33 Aligned_cols=270 Identities=19% Similarity=0.278 Sum_probs=210.9
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecc-ccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~-~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++.++|++++..+.++ ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999996 5799999999875432 34688999999999988877666655 56677899999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccccCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~~~ 762 (941)
|+ +++|.+++.... ..+++..++.++.|++.||+|||+++ |+||||||+||++ +.++.+||+|||+++....
T Consensus 86 ~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 160 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred ec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence 99 999999997433 45899999999999999999999999 9999999999999 4889999999999987654
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch--hHHHHHHHHhhccchhhh
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN--IVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~ 840 (941)
.......+........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ..+....... .. .
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~----~ 235 (296)
T 3uzp_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE-KK----M 235 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHH-HH----H
T ss_pred cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcc-cc----c
Confidence 432221112223456799999999999999999999999999999999999999975321 0000100000 00 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
.......+..++..+.+++..||+.+|.+||++.++++.|+.+......
T Consensus 236 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 236 STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 0000001133457789999999999999999999999999998775543
No 205
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=6.4e-38 Score=348.40 Aligned_cols=258 Identities=29% Similarity=0.474 Sum_probs=209.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcE--EEEEEeccCC-chhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTV--VAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~L 682 (941)
.++|++.+.||+|+||.||+|+.. ++.. ||+|.++... ....+.+.+|+++++++ +||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 367889999999999999999964 5664 4999887532 23346789999999999 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhcC--------------CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc
Q 002289 683 VYEFMSNGTLRDQLSAKS--------------KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT 748 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~ 748 (941)
||||+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCe
Confidence 999999999999997543 246899999999999999999999999 999999999999999999
Q ss_pred EEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHH
Q 002289 749 AKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREV 827 (941)
Q Consensus 749 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~ 827 (941)
+||+|||+++.... ........+++.|+|||++.+..++.++|||||||++|||++ |+.||....... ..
T Consensus 181 ~kL~Dfg~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~-~~ 251 (327)
T 1fvr_A 181 AKIADFGLSRGQEV--------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-LY 251 (327)
T ss_dssp EEECCTTCEESSCE--------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HH
T ss_pred EEEcccCcCccccc--------cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH-HH
Confidence 99999999874321 111233456789999999999889999999999999999998 999997654311 11
Q ss_pred HHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhh
Q 002289 828 NIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 886 (941)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~ 886 (941)
. .+..+.....+..++..+.+++.+|+..+|.+||++.++++.|+.+...
T Consensus 252 ~---------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 252 E---------KLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp H---------HGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred H---------HhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 1 1122223334556678899999999999999999999999999988764
No 206
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.6e-38 Score=359.88 Aligned_cols=295 Identities=17% Similarity=0.265 Sum_probs=208.1
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-----------CCceeeeeeccc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----------HRNLVSLVGYCD 675 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~nIv~l~~~~~ 675 (941)
.++|++.+.||+|+||+||+|+. .+++.||||++... ....+.+.+|++++++++ |+||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 46899999999999999999996 47899999999753 234567889999999886 899999999987
Q ss_pred cCC----cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEc------
Q 002289 676 EEG----EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLD------ 744 (941)
Q Consensus 676 ~~~----~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~------ 744 (941)
..+ ..++||||+ +++|.+++.......+++..++.++.||+.||+|||++ + |+||||||+|||++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCc
Confidence 544 789999999 89999999876666799999999999999999999998 8 99999999999994
Q ss_pred CCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhH
Q 002289 745 HKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIV 824 (941)
Q Consensus 745 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~ 824 (941)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 242 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH----------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHS 242 (373)
T ss_dssp TEEEEEECCCTTCEETTBC----------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred CcceEEEcccccccccCCC----------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccc
Confidence 4458999999999865321 233468999999999999999999999999999999999999997533110
Q ss_pred HHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCC-------CCCCCHHHHHHHHHHhHhhCCCCCCCCccc
Q 002289 825 REVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDET-------DARPSMSEVMRELESIWNMMPESDTKTPEF 897 (941)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p-------~~RPs~~~v~~~L~~~~~~~~~~~~~~~dl 897 (941)
.... ......+... .+..|......-. .....+.... .......++.. ..............+|
T Consensus 243 ~~~~-~~~~~~~~~~----~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 313 (373)
T 1q8y_A 243 YTKD-DDHIAQIIEL----LGELPSYLLRNGK-YTRTFFNSRGLLRNISKLKFWPLEDVLT---EKYKFSKDEAKEISDF 313 (373)
T ss_dssp --CH-HHHHHHHHHH----HCSCCHHHHHHCT-THHHHBCC--CBSSCCCCCBCCHHHHHH---HTTCCCHHHHHHHHHH
T ss_pred cCCh-HHHHHHHHHh----cCCCCHHHHhccc-hhhhhcCCcchhcccccccccchhhhhh---hcccCCcchHHHHHHH
Confidence 0000 0000000011 1222322211100 0001111000 01111222211 1111111112334589
Q ss_pred ccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 898 INSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 898 l~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
|.+||..||++|||++|+|+||||+....
T Consensus 314 i~~~L~~dP~~Rpt~~ell~hp~f~~~~~ 342 (373)
T 1q8y_A 314 LSPMLQLDPRKRADAGGLVNHPWLKDTLG 342 (373)
T ss_dssp HGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred HHHHhccCccccCCHHHHhhChhhhcccC
Confidence 99999999999999999999999987544
No 207
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=347.49 Aligned_cols=270 Identities=23% Similarity=0.303 Sum_probs=209.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccc----cCCcEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCD----EEGEQM 681 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~----~~~~~~ 681 (941)
..++|++.+.||+|+||.||+|.. .+++.||||++........+.+.+|+++++.++||||+++++++. .....+
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 106 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW 106 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence 457899999999999999999997 578999999987666566678999999999999999999999986 345789
Q ss_pred EEEecCCCCCHHHHHhhc--CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 682 LVYEFMSNGTLRDQLSAK--SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
+||||+++|+|.+++... ....+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++..
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 999999999999998752 3456899999999999999999999999 99999999999999999999999999875
Q ss_pred cCCCCCCCc--cccccccccccCCCcccccccccCC---CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhc
Q 002289 760 APVPDIEGI--VPAHVSTVVKGTPGYLDPEYFLTHK---LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSS 834 (941)
Q Consensus 760 ~~~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~ 834 (941)
......... ..........||+.|+|||++.+.. ++.++|||||||++|||++|+.||............
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~----- 258 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVAL----- 258 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHH-----
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhH-----
Confidence 432110000 0001112345799999999987654 688999999999999999999999421100000000
Q ss_pred cchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhC
Q 002289 835 MMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM 887 (941)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~ 887 (941)
..........+..++..+.+++..||+.+|.+||++.++++.|+.+....
T Consensus 259 ---~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~ 308 (317)
T 2buj_A 259 ---AVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPA 308 (317)
T ss_dssp ---HHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCC
T ss_pred ---HhhccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCC
Confidence 01111112223455678999999999999999999999999999875433
No 208
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=5.6e-38 Score=348.87 Aligned_cols=261 Identities=27% Similarity=0.444 Sum_probs=210.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEe------CCCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCc
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 679 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 679 (941)
..++|++.+.||+|+||.||+|++ .+++.||||++.... .....++.+|+.++++++||||+++++++...+.
T Consensus 28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 357899999999999999999984 247789999997543 3345678999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhcCC-----CCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEE
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSK-----EPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKV 751 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~-----~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl 751 (941)
.++||||+++|+|.+++..... ..+++..++.++.|++.||+|||+++ |+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEE
Confidence 9999999999999999976532 45899999999999999999999999 999999999999984 456999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHH
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIA 830 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~ 830 (941)
+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...... +...
T Consensus 185 ~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~-- 256 (327)
T 2yfx_A 185 GDFGMARDIYRASY-----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLE-- 256 (327)
T ss_dssp CCCHHHHHHHC-----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHH--
T ss_pred Cccccccccccccc-----cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH-HHHH--
Confidence 99999975432211 112234457889999999999999999999999999999998 99999755432 1111
Q ss_pred HhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 831 YQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.+..+.....+..++..+.+++..||+.+|.+||++.++++.++.+..
T Consensus 257 -------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 257 -------FVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp -------HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -------HHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 112222334455667889999999999999999999999999987754
No 209
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.7e-38 Score=350.69 Aligned_cols=259 Identities=25% Similarity=0.414 Sum_probs=197.1
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--------hhhHhHHHHHHHHHhcCCCceeeeeeccccC
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 677 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 677 (941)
..++|.+.+.||+|+||.||+|... +++.||||++..... .....+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3568999999999999999999975 689999999875321 1224688999999999999999999998765
Q ss_pred CcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc---EEEeee
Q 002289 678 GEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT---AKVADF 754 (941)
Q Consensus 678 ~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~---~kl~DF 754 (941)
+ .++||||+++++|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+||+++.++. +||+||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Df 161 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDF 161 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred c-eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccC
Confidence 4 89999999999999998643 45899999999999999999999999 999999999999987664 999999
Q ss_pred ccccccCCCCCCCccccccccccccCCCcccccccc---cCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHH
Q 002289 755 GLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL---THKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAY 831 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~ 831 (941)
|+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||............
T Consensus 162 g~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-- 231 (322)
T 2ycf_A 162 GHSKILGET--------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQ-- 231 (322)
T ss_dssp TTCEECCCC--------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHH--
T ss_pred ccceecccc--------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH--
Confidence 999865321 1223456899999999974 467889999999999999999999999643321100000
Q ss_pred hhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCC
Q 002289 832 QSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPS 911 (941)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~s 911 (941)
+..+.. .+..+. .........+|+.+||..||++|||
T Consensus 232 -------~~~~~~-~~~~~~-----------------------------------~~~~~~~~~~li~~~l~~dP~~Rps 268 (322)
T 2ycf_A 232 -------ITSGKY-NFIPEV-----------------------------------WAEVSEKALDLVKKLLVVDPKARFT 268 (322)
T ss_dssp -------HHHTCC-CCCHHH-----------------------------------HTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred -------HHhCcc-ccCchh-----------------------------------hhhcCHHHHHHHHHHcccCHhhCCC
Confidence 000000 000000 0111223346788888888999999
Q ss_pred CccCCCCCCCCCC
Q 002289 912 SSSMLKHPYVSSD 924 (941)
Q Consensus 912 a~e~L~Hpwf~~~ 924 (941)
++|+|+||||+..
T Consensus 269 ~~~~l~h~~~~~~ 281 (322)
T 2ycf_A 269 TEEALRHPWLQDE 281 (322)
T ss_dssp HHHHHTSGGGCCH
T ss_pred HHHHhhCcCcCCH
Confidence 9999999998754
No 210
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=353.21 Aligned_cols=269 Identities=16% Similarity=0.197 Sum_probs=213.5
Q ss_pred HHhcCCCccceeeccCcEEEEEEE------eCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC---CCceeeeeecccc
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGI------LPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCDE 676 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~ 676 (941)
...++|.+.+.||+|+||+||+|. ..+++.||||+++... ..++.+|+++++.++ |+||+++++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 345789999999999999999994 3468899999997643 346778888888886 9999999999999
Q ss_pred CCcEEEEEecCCCCCHHHHHhhc---CCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC--------
Q 002289 677 EGEQMLVYEFMSNGTLRDQLSAK---SKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH-------- 745 (941)
Q Consensus 677 ~~~~~LV~e~~~~gsL~~~l~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~-------- 745 (941)
.+..++||||+++|+|.+++... ....+++..++.++.||++||+|||+++ |+||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC---
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCcccc
Confidence 99999999999999999999742 3456999999999999999999999999 999999999999998
Q ss_pred ---CCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 746 ---KFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 746 ---~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
++.+||+|||+|+...... .........||+.|+|||++.+..++.++|||||||++|||+||+.||.....
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~ 290 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFP-----KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG 290 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSC-----TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET
T ss_pred ccccCCEEEeeCchhhhhhccC-----CCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCC
Confidence 8999999999997543211 12233456799999999999999999999999999999999999999964322
Q ss_pred hHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCC-CCHHHHHHHHHHhHhhCCCCCCCCccccccc
Q 002289 823 IVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDAR-PSMSEVMRELESIWNMMPESDTKTPEFINSE 901 (941)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~R-Ps~~~v~~~L~~~~~~~~~~~~~~~dll~~~ 901 (941)
. . ..+......++ ..+.+.+++..|++.+|.+| |++.++.+.++++..... ....+++.++
T Consensus 291 ~------------~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~---~~~~~~l~~~ 352 (365)
T 3e7e_A 291 G------------E-CKPEGLFRRLP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHY---TNKIRALRNR 352 (365)
T ss_dssp T------------E-EEECSCCTTCS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHT---TTTHHHHHHH
T ss_pred C------------c-eeechhccccC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhh---hhchHHHHHH
Confidence 0 0 00111122222 24567788999999999988 678888888888776432 3334555555
Q ss_pred CC
Q 002289 902 HT 903 (941)
Q Consensus 902 L~ 903 (941)
|.
T Consensus 353 l~ 354 (365)
T 3e7e_A 353 LI 354 (365)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 211
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-38 Score=357.54 Aligned_cols=267 Identities=22% Similarity=0.281 Sum_probs=212.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCC--cEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~--~~~LV 683 (941)
.++|.+.+.||+|+||+||+|.+. +|+.||||+++.... ...+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 467899999999999999999976 589999999975332 23467789999999999999999999987654 78999
Q ss_pred EecCCCCCHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE----cCCCcEEEeeecccc
Q 002289 684 YEFMSNGTLRDQLSAKS-KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL----DHKFTAKVADFGLSR 758 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl----~~~~~~kl~DFGla~ 758 (941)
|||+++|+|.+++.... ...+++..++.++.|++.||+|||+++ |+||||||+|||+ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999997543 234899999999999999999999999 9999999999999 788889999999998
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc--------CCCCchhHhHHHHHHHHHHHhCCCCCCCCch---hHHHH
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT--------HKLTDKSDVYSLGVVFLELLTGMQPISHGKN---IVREV 827 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~---~~~~~ 827 (941)
..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... ..+..
T Consensus 165 ~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~ 236 (396)
T 4eut_A 165 ELEDD--------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236 (396)
T ss_dssp ECCCG--------GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHH
T ss_pred EccCC--------CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHH
Confidence 65432 12234569999999999875 5677899999999999999999999964221 11211
Q ss_pred HHHHhhcc---chhh---h------c---CCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 828 NIAYQSSM---MFSV---I------D---GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 828 ~~~~~~~~---~~~~---~------~---~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
........ ...+ . . ......+......+.+++..|++.||++||++.++++.++++..
T Consensus 237 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 237 YKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp HHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred HHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 11111100 0000 0 0 01123457888899999999999999999999999999988765
No 212
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.1e-38 Score=350.06 Aligned_cols=276 Identities=24% Similarity=0.355 Sum_probs=189.2
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEE
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 682 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~L 682 (941)
....++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 345678999999999999999999964 68999999887543 2234678899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhh------cCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecc
Q 002289 683 VYEFMSNGTLRDQLSA------KSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGL 756 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGl 756 (941)
||||+++++|.+++.. .....+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~ 167 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGV 167 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccc
Confidence 9999999999999864 12346899999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhcc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSM 835 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~ 835 (941)
+......... ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...........
T Consensus 168 ~~~~~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~------- 238 (303)
T 2vwi_A 168 SAFLATGGDI--TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML------- 238 (303)
T ss_dssp HHHCC-----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH-------
T ss_pred hheeccCCCc--cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH-------
Confidence 9765432110 01122234568999999999876 5689999999999999999999999975443211110
Q ss_pred chhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccC
Q 002289 836 MFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSM 915 (941)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~ 915 (941)
............. .++ ...........+++.+||..||++|||++|+
T Consensus 239 ---~~~~~~~~~~~~~-------------~~~-----------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 285 (303)
T 2vwi_A 239 ---TLQNDPPSLETGV-------------QDK-----------------EMLKKYGKSFRKMISLCLQKDPEKRPTAAEL 285 (303)
T ss_dssp ---HHTSSCCCTTC-----------------------------------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred ---HhccCCCcccccc-------------ccc-----------------hhhhhhhHHHHHHHHHHccCChhhCcCHHHH
Confidence 0000000000000 000 0111122233468888999999999999999
Q ss_pred CCCCCCCCCC
Q 002289 916 LKHPYVSSDV 925 (941)
Q Consensus 916 L~Hpwf~~~~ 925 (941)
++||||....
T Consensus 286 l~h~~~~~~~ 295 (303)
T 2vwi_A 286 LRHKFFQKAK 295 (303)
T ss_dssp HTSTTC----
T ss_pred hhChhhhcCC
Confidence 9999997643
No 213
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=7.7e-38 Score=376.85 Aligned_cols=251 Identities=27% Similarity=0.397 Sum_probs=204.5
Q ss_pred ceeeccCcEEEEEEEeC---CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEecCCC
Q 002289 615 TQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSN 689 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~~~~ 689 (941)
+.||+|+||+||+|.+. .++.||||+++.... ...+++.+|++++++++||||+++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999753 468899999976432 234689999999999999999999999964 568999999999
Q ss_pred CCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCcc
Q 002289 690 GTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIV 769 (941)
Q Consensus 690 gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~ 769 (941)
|+|.+++.... .+++..++.|+.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+........
T Consensus 454 g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~--- 525 (635)
T 4fl3_A 454 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY--- 525 (635)
T ss_dssp EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------
T ss_pred CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc---
Confidence 99999997543 5889999999999999999999999 999999999999999999999999999876433211
Q ss_pred ccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCC
Q 002289 770 PAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYP 848 (941)
Q Consensus 770 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (941)
........+|+.|+|||++.+..++.++|||||||++|||++ |+.||........ . ..+..+.....+
T Consensus 526 -~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~-~---------~~i~~~~~~~~p 594 (635)
T 4fl3_A 526 -YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV-T---------AMLEKGERMGCP 594 (635)
T ss_dssp ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-H---------HHHHTTCCCCCC
T ss_pred -cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH-H---------HHHHcCCCCCCC
Confidence 112233456789999999999999999999999999999998 9999976543211 1 112223344566
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 849 SECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 849 ~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..++..+.+++..||+.+|++||++.++++.|+++..
T Consensus 595 ~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~ 631 (635)
T 4fl3_A 595 AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 631 (635)
T ss_dssp TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999998764
No 214
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-38 Score=387.21 Aligned_cols=317 Identities=21% Similarity=0.298 Sum_probs=273.4
Q ss_pred CCCCHHHHHHHHHHHHhCcCCCCCCCCCCCC------CCCCCCC------------CceEecCCCCCCCcceeeEEEecC
Q 002289 30 SITDPIEVSALRSIKKSLVDDYSKLSNWNRG------DPCTSNW------------TGVLCFNTTMDDGYLHLRELQLLN 91 (941)
Q Consensus 30 ~~~~~~d~~aL~~~k~~~~~~~~~~~~w~~~------~~c~~~w------------~gv~C~~~~~~~~~~~l~~L~L~~ 91 (941)
+.+...|+.||++||+++.++ +|+.. ++|+|+| .||+|+.. .+|+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~ 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTT
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECcc
Confidence 344567999999999999765 67543 5666899 99999752 3799999999
Q ss_pred CCCCccCCccccCCCCCCEEEc-ccCCCCCC-------------------------------------------------
Q 002289 92 LNLSGNLSPEIGRLSYLTILDF-MWNKISGS------------------------------------------------- 121 (941)
Q Consensus 92 ~~l~~~~~~~l~~l~~L~~L~L-s~N~l~~~------------------------------------------------- 121 (941)
+++.|.+|+.|++|++|+.|+| ++|.+.|.
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 9999999999999999999999 77755443
Q ss_pred ---------------------------CCCccCCccccceecccCccccC-----------------CCCcccC--CcCc
Q 002289 122 ---------------------------IPKEIGNIKSLELLLLNGNELTG-----------------SLPEELG--YLPK 155 (941)
Q Consensus 122 ---------------------------~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~ 155 (941)
+|..|+++++|++|+|++|+|++ .+|..++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 78889999999999999999998 3899988 9999
Q ss_pred cceeecccccccccCCcccccccccceEeccccc-ccc-cCchhccCCC-------ccceeeccCCcCCCCCCc--cCCC
Q 002289 156 LDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRLP-------SLVHMLLDNNNLTGYLPP--ELSE 224 (941)
Q Consensus 156 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~ 224 (941)
|++|+|++|.+.+.+|..|.++++|+.|+|++|+ ++| .+|..++.++ +|++|+|++|+++ .+|. .|++
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~ 571 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence 9999999999999999999999999999999998 998 8888776555 9999999999999 8888 8999
Q ss_pred CCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCC-cCEEEccCCcCCCCcchhhc
Q 002289 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLN-ITTIKLSNNKLTGTIPSNFS 303 (941)
Q Consensus 225 l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~-L~~L~Ls~N~l~~~~p~~~~ 303 (941)
+++|+.|+|++|+|+ .+| .|..+++|+.|+|++|+|+..+..+.. ..+ |+.|+|++|+|+ .+|..+.
T Consensus 572 L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~--------l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--------FTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp CTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCE--------ECTTCCEEECCSSCCC-SCCSCCC
T ss_pred CCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhh--------ccccCCEEECcCCCCC-cCchhhh
Confidence 999999999999998 577 899999999999999999943333322 244 799999999999 7888888
Q ss_pred CCcc--cceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCc
Q 002289 304 GLPR--LQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFC 370 (941)
Q Consensus 304 ~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~ 370 (941)
.++. |+.|+|++|+++|.+|.....+..+...+|+.|+|++|+|+.++..+ .++.++.|+|++|.+.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 7764 99999999999988876655666666678999999999999888665 5788999999999876
No 215
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.2e-37 Score=349.01 Aligned_cols=199 Identities=31% Similarity=0.503 Sum_probs=172.8
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|+..+.||+|+||+||+|+. .+|+.||||++...... ..+.+.+|++++++++||||+++++++...+..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 34588899999999999999996 57899999998754322 235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||++ |+|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 133 ~e~~~-g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~- 206 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP- 206 (348)
T ss_dssp EECCS-EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-
T ss_pred EecCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceecCC-
Confidence 99996 78988886433 45899999999999999999999999 99999999999999999999999999976432
Q ss_pred CCCCccccccccccccCCCcccccccc---cCCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFL---THKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
.....||+.|+|||++. +..++.++|||||||++|||++|+.||.....
T Consensus 207 ----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~ 258 (348)
T 1u5q_A 207 ----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA 258 (348)
T ss_dssp ----------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred ----------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence 12346899999999985 56789999999999999999999999975543
No 216
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.4e-37 Score=353.97 Aligned_cols=251 Identities=23% Similarity=0.336 Sum_probs=199.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCC--chhhHhHHHHHHHHHhcC--CCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~~~LV 683 (941)
..+|++.+.||+|+||+||+|...+++.||||++.... ....+.+.+|++++++++ |+||+++++++...+..++|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 35689999999999999999998889999999987543 233467899999999996 59999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|| +.+++|.+++.... .+++..++.++.||+.||+|||+++ |+||||||+|||++ ++.+||+|||+++.....
T Consensus 135 ~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp EE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred Ee-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 99 45899999997654 5888899999999999999999999 99999999999995 589999999999865432
Q ss_pred CCCCccccccccccccCCCccccccccc-----------CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLT-----------HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
.. ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....+......
T Consensus 208 ~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~---- 278 (390)
T 2zmd_A 208 TT-----SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLH---- 278 (390)
T ss_dssp -----------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH----
T ss_pred Cc-----cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHH----
Confidence 11 112234569999999999875 4688999999999999999999999976543322222
Q ss_pred hccchhhhcCC-CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 833 SSMMFSVIDGN-MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 833 ~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.+++.. ...++...+..+.+++..||..+|.+||++.+++++
T Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 279 -----AIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp -----HHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -----HHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 122211 122334445678889999999999999999998865
No 217
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-37 Score=343.88 Aligned_cols=259 Identities=19% Similarity=0.263 Sum_probs=202.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
-++|++.+.||+|+||.||+|... +++.||+|++...... ..+.+.+|++++++++||||+++++++...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 468999999999999999999975 6899999998754322 236788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.... .+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++......
T Consensus 113 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 99999999999997653 4889999999999999999999999 999999999999999999999999999765432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
. ........|++.|+|||++.+..++.++||||||+++|||++|+.||...... .......... ..
T Consensus 188 ~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~------~~ 253 (309)
T 2h34_A 188 K------LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAI------PR 253 (309)
T ss_dssp ---------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCC------CC
T ss_pred c------cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCC------CC
Confidence 1 11223456899999999999999999999999999999999999999765432 1111111000 00
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHhHh
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARP-SMSEVMRELESIWN 885 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RP-s~~~v~~~L~~~~~ 885 (941)
....+..++..+.+++.+||+.+|++|| ++.++++.|+....
T Consensus 254 ~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 254 PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 1113345566788999999999999999 99999999887644
No 218
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1.3e-37 Score=338.44 Aligned_cols=253 Identities=25% Similarity=0.401 Sum_probs=203.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 367889999999999999999975 688999999864322 1235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++|+|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++......
T Consensus 93 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp ECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 99999999999997654 4889999999999999999999999 999999999999999999999999998754321
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
......|++.|+|||++.+..++.++||||||+++|||++|+.||......... .. +...
T Consensus 168 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~---------~~~~- 227 (284)
T 2vgo_A 168 ---------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETH-RR---------IVNV- 227 (284)
T ss_dssp ---------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH-HH---------HHTT-
T ss_pred ---------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHH-HH---------Hhcc-
Confidence 123456899999999999999999999999999999999999999754432111 00 0000
Q ss_pred CCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 844 MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 844 ~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
...++.. ......++|.+||..||++|||++|+++||||+.
T Consensus 228 ~~~~~~~---------------------------------------~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~ 268 (284)
T 2vgo_A 228 DLKFPPF---------------------------------------LSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKA 268 (284)
T ss_dssp CCCCCTT---------------------------------------SCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHH
T ss_pred ccCCCCc---------------------------------------CCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHh
Confidence 0011111 1122236777788888888888888999999875
Q ss_pred C
Q 002289 924 D 924 (941)
Q Consensus 924 ~ 924 (941)
.
T Consensus 269 ~ 269 (284)
T 2vgo_A 269 N 269 (284)
T ss_dssp H
T ss_pred h
Confidence 4
No 219
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=4.2e-38 Score=341.35 Aligned_cols=207 Identities=27% Similarity=0.445 Sum_probs=173.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeecc--ccCCcEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYC--DEEGEQML 682 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~--~~~~~~~L 682 (941)
.++|++.+.||+|+||+||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++ ...+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 467889999999999999999975 689999999875432 3346789999999999999999999987 44678999
Q ss_pred EEecCCCCCHHHHHhhc--CCCCccHHHHHHHHHHHHHHHHHhhcCC--CCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 683 VYEFMSNGTLRDQLSAK--SKEPLGFAMRLSIALGSSRGILYLHTEA--DPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 683 V~e~~~~gsL~~~l~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
||||+++++|.+++... ....+++..++.++.|++.||+|||+.+ ..+|+||||||+||+++.++.+||+|||.++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 99999999999999753 3445899999999999999999999876 2349999999999999999999999999998
Q ss_pred ccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
...... .......||..|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 165 ~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 220 (279)
T 2w5a_A 165 ILNHDT-------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS 220 (279)
T ss_dssp HC---C-------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred eecccc-------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC
Confidence 653211 11234568999999999999999999999999999999999999997543
No 220
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=336.79 Aligned_cols=260 Identities=22% Similarity=0.307 Sum_probs=199.0
Q ss_pred CCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEecCC
Q 002289 610 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMS 688 (941)
Q Consensus 610 ~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e~~~ 688 (941)
+|.....||+|+||.||+|.+. +++.||||++........+.+.+|+.+++.++||||+++++++...+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 4555669999999999999964 689999999987655556789999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC-CCcEEEeeeccccccCCCCCC
Q 002289 689 NGTLRDQLSAKS-KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH-KFTAKVADFGLSRLAPVPDIE 766 (941)
Q Consensus 689 ~gsL~~~l~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~-~~~~kl~DFGla~~~~~~~~~ 766 (941)
+++|.+++.... ...+++..++.++.|++.||+|||+++ |+||||||+||+++. ++.+||+|||.++......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-- 177 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-- 177 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCC--
Confidence 999999997653 345778999999999999999999999 999999999999987 8999999999998654221
Q ss_pred CccccccccccccCCCcccccccccCC--CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCC
Q 002289 767 GIVPAHVSTVVKGTPGYLDPEYFLTHK--LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNM 844 (941)
Q Consensus 767 ~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (941)
.......||+.|+|||++.+.. ++.++||||||+++|||++|+.||............. ......
T Consensus 178 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~--------~~~~~~ 244 (295)
T 2clq_A 178 -----PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV--------GMFKVH 244 (295)
T ss_dssp --------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHH--------HHHCCC
T ss_pred -----CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhh--------cccccc
Confidence 1123456899999999997653 8899999999999999999999996432211100000 000000
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 845 GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 845 ~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
...+.. ..+...+++.+||..||++|||++|+|+||||+..
T Consensus 245 ~~~~~~---------------------------------------~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~ 285 (295)
T 2clq_A 245 PEIPES---------------------------------------MSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVS 285 (295)
T ss_dssp CCCCTT---------------------------------------SCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC-
T ss_pred cccccc---------------------------------------CCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhc
Confidence 111111 11222357777888888999999999999999765
Q ss_pred CC
Q 002289 925 VS 926 (941)
Q Consensus 925 ~~ 926 (941)
..
T Consensus 286 ~~ 287 (295)
T 2clq_A 286 SK 287 (295)
T ss_dssp --
T ss_pred cc
Confidence 43
No 221
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=354.38 Aligned_cols=276 Identities=22% Similarity=0.372 Sum_probs=203.0
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCc-----
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE----- 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~----- 679 (941)
.++|.+.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.+++.++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 467889999999999999999975 689999999875332 224678899999999999999999999876653
Q ss_pred -EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 680 -QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 680 -~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
.++||||++ ++|.+++.. .+++..++.++.||+.||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred eEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999996 688887732 3899999999999999999999999 9999999999999999999999999997
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc-CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ .......
T Consensus 175 ~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~i~~~---- 239 (353)
T 3coi_A 175 HADA----------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ-LTQILKV---- 239 (353)
T ss_dssp C------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHH-HHHHHHH----
T ss_pred CCCC----------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHH----
Confidence 5422 1233468999999999887 6789999999999999999999999976543221 1111100
Q ss_pred hhhcCCCCCCChHHHHHH----HHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCc
Q 002289 838 SVIDGNMGSYPSECVEKF----IKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSS 913 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l----~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~ 913 (941)
. +..+.+....+ .......+...+ |+.+. ...+...+.+.+||.+||..||++|||++
T Consensus 240 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~li~~~L~~dp~~Rpt~~ 301 (353)
T 3coi_A 240 --T----GVPGTEFVQKLNDKAAKSYIQSLPQTP--RKDFT----------QLFPRASPQAADLLEKMLELDVDKRLTAA 301 (353)
T ss_dssp --H----CBCCHHHHTTCSCHHHHHHHHTSCBCS--SCCTT----------TTCTTSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred --h----CCCCHHHHHHHhhHHHHHHHHhCcCCC--CccHH----------HhcCCcCHHHHHHHHHHcCCCcccCCCHH
Confidence 0 00111111100 000000111111 11111 11223344556899999999999999999
Q ss_pred cCCCCCCCCCC
Q 002289 914 SMLKHPYVSSD 924 (941)
Q Consensus 914 e~L~Hpwf~~~ 924 (941)
|+|+||||+..
T Consensus 302 e~l~hp~f~~~ 312 (353)
T 3coi_A 302 QALTHPFFEPF 312 (353)
T ss_dssp HHHTSGGGTTT
T ss_pred HHhcCcchhhc
Confidence 99999999754
No 222
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=8.3e-37 Score=331.85 Aligned_cols=201 Identities=26% Similarity=0.410 Sum_probs=174.5
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||+||+|... +++.||+|+++..... ..+.+.+|++++++++||||+++++++...+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 457899999999999999999976 6899999998754322 246789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCC----cEEEeeecc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKF----TAKVADFGL 756 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~----~~kl~DFGl 756 (941)
++||||+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++ .+||+|||.
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 99999999999999997543 4899999999999999999999999 99999999999998877 899999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
+....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 159 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 215 (283)
T 3bhy_A 159 AHKIEAGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET 215 (283)
T ss_dssp CEECC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred ceeccCCC--------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc
Confidence 98653221 1233458999999999999999999999999999999999999997654
No 223
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1.5e-37 Score=336.37 Aligned_cols=200 Identities=28% Similarity=0.414 Sum_probs=167.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+++++.++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468899999999999999999976 789999999865322 2235788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred EeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 99999999999997653 4889999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHG 820 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~ 820 (941)
. ......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||...
T Consensus 165 ~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 214 (276)
T 2h6d_A 165 E--------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE 214 (276)
T ss_dssp --------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred c--------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 1 1233468899999999988765 68999999999999999999999654
No 224
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.3e-38 Score=358.51 Aligned_cols=260 Identities=10% Similarity=-0.002 Sum_probs=181.4
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc---hhhHhHHHHHHHHHhc--CCCceeeeee-------cc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL--HHRNLVSLVG-------YC 674 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~nIv~l~~-------~~ 674 (941)
..+|++.+.||+|+||+||+|++. +|+.||||++..... ...+.+.+|+++++.+ +||||++++. ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345888999999999999999965 789999999987543 2245677885555444 6999887553 33
Q ss_pred ccC-----------------CcEEEEEecCCCCCHHHHHhhcCCCCccHHHH------HHHHHHHHHHHHHhhcCCCCCe
Q 002289 675 DEE-----------------GEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMR------LSIALGSSRGILYLHTEADPPV 731 (941)
Q Consensus 675 ~~~-----------------~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~~~~i 731 (941)
... ...++||||++ |+|.+++..... .+.+..+ +.++.||++||+|||+++ |
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---i 215 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSKG---L 215 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---E
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---C
Confidence 222 33799999998 899999976422 2344455 778899999999999999 9
Q ss_pred EeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCccccccccc--CCCCchhHhHHHHHHHHH
Q 002289 732 FHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT--HKLTDKSDVYSLGVVFLE 809 (941)
Q Consensus 732 vH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDVwSlG~ll~e 809 (941)
+||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++|||||||++||
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~e 285 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYR 285 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTC----------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCC----------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHH
Confidence 9999999999999999999999999986431 1113456799999999987 779999999999999999
Q ss_pred HHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCC
Q 002289 810 LLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPE 889 (941)
Q Consensus 810 lltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~ 889 (941)
|++|+.||........ ............ ..++.+ ...+.
T Consensus 286 lltg~~Pf~~~~~~~~--------~~~~~~~~~~~~----------------------~~~~~~-----------~~~~~ 324 (371)
T 3q60_A 286 VWCLFLPFGLVTPGIK--------GSWKRPSLRVPG----------------------TDSLAF-----------GSCTP 324 (371)
T ss_dssp HHHSSCSTTBCCTTCT--------TCCCBCCTTSCC----------------------CCSCCC-----------TTSSC
T ss_pred HHhCCCCCCCcCcccc--------cchhhhhhhhcc----------------------ccccch-----------hhccC
Confidence 9999999975422100 000000000000 000000 00011
Q ss_pred CCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 890 SDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 890 ~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..+...+||.+||..||++|||++|+|+||||+.
T Consensus 325 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~ 358 (371)
T 3q60_A 325 LPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQ 358 (371)
T ss_dssp CCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHH
T ss_pred CCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHH
Confidence 2233446888899999999999999999999975
No 225
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=3.2e-37 Score=338.84 Aligned_cols=201 Identities=29% Similarity=0.443 Sum_probs=177.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 467889999999999999999964 689999999875432 335678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++++|.+++.. ..+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||++.......
T Consensus 101 ~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ- 173 (303)
T ss_dssp CCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTB-
T ss_pred eCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCccc-
Confidence 9999999999954 35899999999999999999999999 9999999999999999999999999997654321
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.......||+.|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 174 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 223 (303)
T 3a7i_A 174 ------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH 223 (303)
T ss_dssp ------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred ------cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC
Confidence 11234568999999999999999999999999999999999999997543
No 226
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=338.15 Aligned_cols=252 Identities=23% Similarity=0.353 Sum_probs=199.8
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC----chhhHhHHHHHHHHHhcCCCceeeeeecc--ccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHHRNLVSLVGYC--DEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~--~~~~~~ 680 (941)
.++|++.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|++++++++||||+++++++ .+.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 478999999999999999999974 68999999987532 22346789999999999999999999998 445688
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||++++ |.+++.......+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||.+...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999765 888887766667999999999999999999999999 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCC--CCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHK--LTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS 838 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~ 838 (941)
..... ........||..|+|||++.+.. ++.++||||||+++|||++|+.||...... +....
T Consensus 160 ~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~--------- 224 (305)
T 2wtk_C 160 HPFAA-----DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY-KLFEN--------- 224 (305)
T ss_dssp CTTCS-----SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHH---------
T ss_pred Ccccc-----ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH-HHHHH---------
Confidence 43221 12223456899999999998654 377999999999999999999999764421 11111
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 839 VIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
+.......+..++..+.+++.+|++.+|.+||++.+++++
T Consensus 225 -i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 225 -IGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp -HHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred -HhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1111123344556677788888888888888888888754
No 227
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=344.45 Aligned_cols=267 Identities=24% Similarity=0.380 Sum_probs=194.9
Q ss_pred HHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeecc--------c
Q 002289 606 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYC--------D 675 (941)
Q Consensus 606 ~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~--------~ 675 (941)
....+|++.+.||+|+||.||+|++. +++.||||++........+.+.+|+.+++++. ||||+++++++ .
T Consensus 25 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 25 LGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred ccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence 34568999999999999999999965 78999999987666666678899999999996 99999999988 3
Q ss_pred cCCcEEEEEecCCCCCHHHHHhh-cCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeee
Q 002289 676 EEGEQMLVYEFMSNGTLRDQLSA-KSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADF 754 (941)
Q Consensus 676 ~~~~~~LV~e~~~~gsL~~~l~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DF 754 (941)
.....++||||++ |+|.+++.. .....+++..++.++.|++.||+|||+++ ++|+||||||+|||++.++.+||+||
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecC
Confidence 3445899999995 799998865 23446999999999999999999999875 45999999999999999999999999
Q ss_pred ccccccCCCCCCCccc-----cccccccccCCCccccccc---ccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHH
Q 002289 755 GLSRLAPVPDIEGIVP-----AHVSTVVKGTPGYLDPEYF---LTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVRE 826 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~---~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~ 826 (941)
|+++............ ........||+.|+|||++ .+..++.++|||||||++|||++|+.||.......
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-- 260 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-- 260 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH--
Confidence 9998764332111000 0111244589999999998 56778999999999999999999999996433211
Q ss_pred HHHHHhhccchhhhcCCC-CCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 827 VNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
+..... ...+...+..+.+++..|++.+|.+||++.++++.|+.+.....
T Consensus 261 ------------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 261 ------------IVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp -----------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ------------hhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 011111 11223334567889999999999999999999999998876543
No 228
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=4.5e-37 Score=357.53 Aligned_cols=269 Identities=21% Similarity=0.292 Sum_probs=211.1
Q ss_pred hcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCC-CceeeeeeccccCCcEEEEEe
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH-RNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~nIv~l~~~~~~~~~~~LV~e 685 (941)
.++|++.++||+|+||.||+|++ .+++.||||++..... ..++.+|+++++.++| ++|..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999996 4789999998875432 3468899999999987 556666666677788899999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEE---cCCCcEEEeeeccccccCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILL---DHKFTAKVADFGLSRLAPV 762 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl---~~~~~~kl~DFGla~~~~~ 762 (941)
|+ +++|.+++.... ..+++..++.|+.||+.||+|||+++ |+||||||+|||+ +.++.+||+|||+++....
T Consensus 84 ~~-g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~ 158 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD 158 (483)
T ss_dssp CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred CC-CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence 99 999999997533 35899999999999999999999999 9999999999999 6889999999999987654
Q ss_pred CCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCch--hHHHHHHHHhhccchhhh
Q 002289 763 PDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKN--IVREVNIAYQSSMMFSVI 840 (941)
Q Consensus 763 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~ 840 (941)
.......+........||..|+|||++.+..++.++|||||||++|||++|+.||..... ..+.+..... ......+
T Consensus 159 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~-~~~~~~~ 237 (483)
T 3sv0_A 159 TSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISE-KKVATSI 237 (483)
T ss_dssp TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHH-HHHHSCH
T ss_pred CccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhh-ccccccH
Confidence 332221122233456799999999999999999999999999999999999999975332 1111111110 0000000
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCC
Q 002289 841 DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 888 (941)
Q Consensus 841 ~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~ 888 (941)
......++.++.+++..||+.+|++||++.++++.|+.+.....
T Consensus 238 ----~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~ 281 (483)
T 3sv0_A 238 ----EALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREG 281 (483)
T ss_dssp ----HHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred ----HHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcC
Confidence 00112335678999999999999999999999999998876443
No 229
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-38 Score=378.61 Aligned_cols=320 Identities=20% Similarity=0.295 Sum_probs=271.0
Q ss_pred CCCHHHHHHHHHHHHhCcCCCC--------CCCCCCCCCCCCCCC---CceEecCCCCCCCcceeeEEEecCCCCCccCC
Q 002289 31 ITDPIEVSALRSIKKSLVDDYS--------KLSNWNRGDPCTSNW---TGVLCFNTTMDDGYLHLRELQLLNLNLSGNLS 99 (941)
Q Consensus 31 ~~~~~d~~aL~~~k~~~~~~~~--------~~~~w~~~~~c~~~w---~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~ 99 (941)
.....|+.||.++++++.++.. ...+|+...+| |.| .||+|+.. .+|+.|+|++++++|.+|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-DMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-GGTTCCTTEEECTT------CCEEEEECTTSCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-ccccCCCCeEEcCC------CCEEEEEecCcccCCcCC
Confidence 3445799999999999975532 23479876555 479 99999653 389999999999999999
Q ss_pred ccccCCCCCCEEEcccCC--------------------------------------------------------------
Q 002289 100 PEIGRLSYLTILDFMWNK-------------------------------------------------------------- 117 (941)
Q Consensus 100 ~~l~~l~~L~~L~Ls~N~-------------------------------------------------------------- 117 (941)
++|++|++|++|+|++|.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 999999999999999884
Q ss_pred ----------------CCCCCCCccCCccccceecccCccccCC-----------------CCcccC--CcCccceeecc
Q 002289 118 ----------------ISGSIPKEIGNIKSLELLLLNGNELTGS-----------------LPEELG--YLPKLDRIQID 162 (941)
Q Consensus 118 ----------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls 162 (941)
++| +|..|+++++|++|+|++|++++. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 344 788899999999999999999986 999999 99999999999
Q ss_pred cccccccCCcccccccccceEeccccc-ccc-cCchhccCC------CccceeeccCCcCCCCCCc--cCCCCCCCCEEe
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRL------PSLVHMLLDNNNLTGYLPP--ELSELPKLLILQ 232 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~ 232 (941)
+|.+.+.+|..|.++++|++|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .++++++|++|+
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEe
Confidence 999999999999999999999999998 998 899888876 99999999999999 8888 899999999999
Q ss_pred ccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCC-cCEEEccCCcCCCCcchhhcCCc--ccc
Q 002289 233 LDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLN-ITTIKLSNNKLTGTIPSNFSGLP--RLQ 309 (941)
Q Consensus 233 Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~ 309 (941)
|++|+++| .+| .|..+++|++|+|++|+++..+..+.. ..+ |++|+|++|+|+ .+|..+..++ +|+
T Consensus 337 L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~--------l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 337 CLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCG--------FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEE--------ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhh--------hcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 99999997 677 899999999999999999844433322 344 689999999998 7888887755 899
Q ss_pred eeecccccCccCCCccccc--ccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCc
Q 002289 310 RLFIANNSLSGSIPSSIWQ--SRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFC 370 (941)
Q Consensus 310 ~L~Ls~N~l~~~~p~~~~~--l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~ 370 (941)
.|++++|++++.+|..+.. ...+...+|+.|+|++|+|+.++..+ .++.++.|+|++|.+.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 9999999999888888762 22234457889999999999887765 4788899999998875
No 230
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.1e-37 Score=341.97 Aligned_cols=264 Identities=23% Similarity=0.353 Sum_probs=210.1
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHh--cCCCceeeeeeccccCC--
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG-- 678 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~~~-- 678 (941)
......++|++.+.||+|+||+||+|++ +|+.||||++... ..+.+.+|.++++. ++||||+++++++...+
T Consensus 36 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~ 111 (342)
T 1b6c_B 36 VQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGT 111 (342)
T ss_dssp HHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSS
T ss_pred ecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCc
Confidence 3445568899999999999999999998 5899999998642 34567889998887 78999999999997765
Q ss_pred --cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhh--------cCCCCCeEeccCCCCcEEEcCCCc
Q 002289 679 --EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLH--------TEADPPVFHRDIKASNILLDHKFT 748 (941)
Q Consensus 679 --~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivH~DLkp~NILl~~~~~ 748 (941)
..++||||+++|+|.+++.+. .+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.
T Consensus 112 ~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~ 185 (342)
T 1b6c_B 112 WTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGT 185 (342)
T ss_dssp CCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSC
T ss_pred cceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCC
Confidence 789999999999999999753 4899999999999999999999 777 999999999999999999
Q ss_pred EEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCC------CCchhHhHHHHHHHHHHHhC---------
Q 002289 749 AKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHK------LTDKSDVYSLGVVFLELLTG--------- 813 (941)
Q Consensus 749 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~sDVwSlG~ll~elltG--------- 813 (941)
+||+|||+++........ .........||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus 186 ~kL~Dfg~~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~ 262 (342)
T 1b6c_B 186 CCIADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHED 262 (342)
T ss_dssp EEECCCTTCEEEETTTTE---EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCC
T ss_pred EEEEECCCceeccccccc---cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccc
Confidence 999999999765432210 011223456899999999998753 33689999999999999999
Q ss_pred -CCCCCCCch---hHHHHHHHHhhccchhhhcCCCCCCC-----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhH
Q 002289 814 -MQPISHGKN---IVREVNIAYQSSMMFSVIDGNMGSYP-----SECVEKFIKLALKCCQDETDARPSMSEVMRELESIW 884 (941)
Q Consensus 814 -~~Pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~ 884 (941)
+.||..... ........... .......+ .+++..+.+++..||+.+|++||++.+++++|+.+.
T Consensus 263 ~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~ 335 (342)
T 1b6c_B 263 YQLPYYDLVPSDPSVEEMRKVVCE-------QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 335 (342)
T ss_dssp CCCTTTTTSCSSCCHHHHHHHHTT-------SCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccCccccCcCcccHHHHHHHHHH-------HHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 778864321 11111111111 01112222 467889999999999999999999999999999986
Q ss_pred hh
Q 002289 885 NM 886 (941)
Q Consensus 885 ~~ 886 (941)
+.
T Consensus 336 ~~ 337 (342)
T 1b6c_B 336 QQ 337 (342)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 231
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=344.73 Aligned_cols=212 Identities=29% Similarity=0.448 Sum_probs=173.9
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeecccc
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 676 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~ 676 (941)
+.+.++....++|++.+.||+|+||.||+|.+. +|+.||||++.... ...+.+.+|+++++++ +||||+++++++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 92 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK 92 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence 344445556789999999999999999999974 78999999987543 3346789999999999 89999999999865
Q ss_pred ------CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEE
Q 002289 677 ------EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAK 750 (941)
Q Consensus 677 ------~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~k 750 (941)
.+..++||||+++|+|.+++.......+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+|
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEE
T ss_pred ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEE
Confidence 467899999999999999998765556899999999999999999999999 99999999999999999999
Q ss_pred EeeeccccccCCCCCCCccccccccccccCCCcccccccc-----cCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 751 VADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL-----THKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 751 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
|+|||++....... .......||+.|+|||++. +..++.++|||||||++|||++|+.||....
T Consensus 170 l~Dfg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 238 (326)
T 2x7f_A 170 LVDFGVSAQLDRTV-------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH 238 (326)
T ss_dssp ECCCTTTC--------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred EeeCcCceecCcCc-------cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc
Confidence 99999987653211 1123446899999999987 5678999999999999999999999996544
No 232
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-37 Score=381.19 Aligned_cols=310 Identities=24% Similarity=0.344 Sum_probs=226.6
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCceEecCCCCCCCcceeeEEEecCCCCCcc---CC----------
Q 002289 33 DPIEVSALRSIKKSLVDDYSKLSNWNRGDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGN---LS---------- 99 (941)
Q Consensus 33 ~~~d~~aL~~~k~~~~~~~~~~~~w~~~~~c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~---~~---------- 99 (941)
.++|++||++||+++.|+. .+++|..+++|| .|.||+|+. .+|+.|+|+++++.|. ++
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C-~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPC-TFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG-GSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCc-CCcceEECC-------CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 5679999999999999877 889998666664 799999972 3899999999999886 44
Q ss_pred -------------ccccCCCCCCEEEcccCCCCCCCCC--ccCCccccceecccCccccCCCCccc-CCcCccceeeccc
Q 002289 100 -------------PEIGRLSYLTILDFMWNKISGSIPK--EIGNIKSLELLLLNGNELTGSLPEEL-GYLPKLDRIQIDQ 163 (941)
Q Consensus 100 -------------~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~ 163 (941)
+.|+++++|++|+|++|.++|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|+|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4667777788888888888777776 77788888888888888877777665 7778888888888
Q ss_pred ccccccCCcc---cccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 164 NYISGSLPKS---FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 164 N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|.+++..|.. +.++++|++|+|++|++++.++. ..+++|++|+|++|++++.+|. ++++++|++|+|++|++++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 8887777766 67788888888888888776653 6788999999999999987776 8999999999999999988
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCC-cccceeecccccCc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGL-PRLQRLFIANNSLS 319 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 319 (941)
.+|..+.++++|++|+|++|++++.+|.. .+ .+|++|+|++|++++.+|..+..+ ++|+.|+|++|+++
T Consensus 238 -~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l--------~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 238 -DFSRAISTCTELKLLNISSNQFVGPIPPL-PL--------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp -CHHHHTTTCSSCCEEECCSSCCEESCCCC-CC--------TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred -cccHHHhcCCCCCEEECCCCcccCccCcc-cc--------CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 68889999999999999999998877753 22 334555555555555555555443 55555555555555
Q ss_pred cCCCcccccccccCccccceEEccCCCCC-CCCCC-C-CCCCCcEEEecCCCC
Q 002289 320 GSIPSSIWQSRTLNATETFILDFQNNNLT-NISGS-F-NIPPNVTVRLRGNPF 369 (941)
Q Consensus 320 ~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~-~~~~~-~-~~~~~~~l~l~~Np~ 369 (941)
+.+|..+..+. +|+.|+|++|+++ .++.. + .++.++.|++++|.+
T Consensus 308 ~~~p~~~~~l~-----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 308 GAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp ECCCGGGGGCT-----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CccchHHhcCC-----CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 55555554432 2335555555554 33322 1 344455555555543
No 233
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=4e-38 Score=351.34 Aligned_cols=260 Identities=19% Similarity=0.309 Sum_probs=177.0
Q ss_pred HhcCCCccc-eeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHH-HHHHhcCCCceeeeeecccc----CCc
Q 002289 607 ATNNFNSST-QIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEI-QFLSRLHHRNLVSLVGYCDE----EGE 679 (941)
Q Consensus 607 ~~~~y~~~~-~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~-~~l~~l~h~nIv~l~~~~~~----~~~ 679 (941)
..++|.+.+ .||+|+||+||+|... +|+.||||++.... ...+|+ ..++.++||||+++++++.. ...
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 100 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRC 100 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence 457888855 6999999999999976 68999999986521 223333 34666799999999999865 455
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEEeeecc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKVADFGL 756 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl~DFGl 756 (941)
.++||||+++|+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++. ++.+||+|||+
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEecccc
Confidence 899999999999999998776667999999999999999999999999 999999999999976 45699999999
Q ss_pred ccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccc
Q 002289 757 SRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 757 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 178 ~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---------- 238 (336)
T 3fhr_A 178 AKETTQN---------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS---------- 238 (336)
T ss_dssp CEEC-------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------
T ss_pred ceecccc---------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh----------
Confidence 9764321 123446799999999998888999999999999999999999999643221000
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
......+.......|. | ......+.+.+||.+||..||++|||++|+|
T Consensus 239 ----------------~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 286 (336)
T 3fhr_A 239 ----------------PGMKRRIRLGQYGFPN--P--------------EWSEVSEDAKQLIRLLLKTDPTERLTITQFM 286 (336)
T ss_dssp ----------------------------CCCT--T--------------TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred ----------------hhHHHhhhccccccCc--h--------------hhccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 0000000000000000 0 0011222334688888999999999999999
Q ss_pred CCCCCCCCC
Q 002289 917 KHPYVSSDV 925 (941)
Q Consensus 917 ~Hpwf~~~~ 925 (941)
+||||+...
T Consensus 287 ~hp~~~~~~ 295 (336)
T 3fhr_A 287 NHPWINQSM 295 (336)
T ss_dssp HSHHHHTGG
T ss_pred cCccccccc
Confidence 999997643
No 234
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.3e-37 Score=336.38 Aligned_cols=260 Identities=24% Similarity=0.386 Sum_probs=200.7
Q ss_pred hcCCCccceeeccCcEEEEEEEeC--CCc--EEEEEEeccCC---chhhHhHHHHHHHHHhcCCCceeeeeeccccCCcE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP--DGT--VVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 680 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 680 (941)
.++|++.+.||+|+||+||+|++. +++ .||||+++... ....+.+.+|++++++++||||+++++++...+ .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 467889999999999999999853 333 68999887542 233567899999999999999999999998754 8
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
++||||+++++|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEccccccccc
Confidence 89999999999999997542 35889999999999999999999999 999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
...... ........+|..|+|||++.+..++.++||||||+++|||++ |+.||....... .......
T Consensus 172 ~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-~~~~~~~------- 239 (291)
T 1u46_A 172 PQNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ-ILHKIDK------- 239 (291)
T ss_dssp CC-CCE----EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHHHHHT-------
T ss_pred cccccc----hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH-HHHHHHc-------
Confidence 432210 112233457788999999999889999999999999999999 999997654321 1111110
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.......+..++..+.+++..|++.+|++||++.++++.|+++..
T Consensus 240 -~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 240 -EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp -SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred -cCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 111223445667889999999999999999999999999987643
No 235
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.1e-38 Score=349.96 Aligned_cols=259 Identities=24% Similarity=0.370 Sum_probs=189.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHh--cCCCceeeeeeccccCC----cEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG----EQM 681 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~~~----~~~ 681 (941)
.++|++.+.||+|+||+||+|++ +|+.||||++... ....+.+|.+++.. ++||||+++++++...+ ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 36799999999999999999987 4899999998653 34567788888887 79999999999997766 789
Q ss_pred EEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhh--------cCCCCCeEeccCCCCcEEEcCCCcEEEee
Q 002289 682 LVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLH--------TEADPPVFHRDIKASNILLDHKFTAKVAD 753 (941)
Q Consensus 682 LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivH~DLkp~NILl~~~~~~kl~D 753 (941)
+||||+++|+|.+++... .+++..++.++.|++.||+||| +.+ |+||||||+|||++.++.+||+|
T Consensus 78 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nil~~~~~~~kl~D 151 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEEECCTTCCHHHHHHHC---CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCC
T ss_pred EEEeccCCCCHHHHHhcc---CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCC---EeeCcCCHHHeEECCCCCEEEee
Confidence 999999999999999654 4778889999999999999999 777 99999999999999999999999
Q ss_pred eccccccCCCCCCCccccccccccccCCCcccccccccC------CCCchhHhHHHHHHHHHHHhC----------CCCC
Q 002289 754 FGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTH------KLTDKSDVYSLGVVFLELLTG----------MQPI 817 (941)
Q Consensus 754 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDVwSlG~ll~elltG----------~~Pf 817 (941)
||+++........ .........||+.|+|||++.+. .++.++|||||||++|||++| +.||
T Consensus 152 Fg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~ 228 (303)
T 3gxj_A 152 LGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 228 (303)
T ss_dssp CCC-CCEETTTTE---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTT
T ss_pred cCcceeccCCCcc---cccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccc
Confidence 9999765432211 01112334699999999999876 344689999999999999999 6666
Q ss_pred CCCchhHHHHHHHHhhccc-hhhhcCC-CCCCC-----hHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 818 SHGKNIVREVNIAYQSSMM-FSVIDGN-MGSYP-----SECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-----~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
........ ....+ ..+.... .+..+ .+++..+.+++..||+.+|.+||++.++++.|+.+..
T Consensus 229 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 229 YDLVPSDP------SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp TTTCC-CC------CCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred cccCCCCc------cHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 43211000 00001 1111111 12233 3677899999999999999999999999999987643
No 236
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=6.8e-37 Score=342.03 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=171.2
Q ss_pred HhcCCCccceeeccCcEEEEEEEe-CCCcEEEEEEeccCCc-hhhHhHHHHHHH-HHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||+||+|.. .+|+.||||+++.... ....++..|..+ ++.++||||+++++++...+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 456788899999999999999996 4789999999976432 234456666665 7788999999999999999999999
Q ss_pred EecCCCCCHHHHHhhc--CCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeecccccc
Q 002289 684 YEFMSNGTLRDQLSAK--SKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
|||++ |+|.+++... ....+++..++.++.||+.||+|||++ + |+||||||+||+++.++.+||+|||+++..
T Consensus 129 ~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 129 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp ECCCS-EEHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHHhh-CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 99996 5999988642 345699999999999999999999986 8 999999999999999999999999999765
Q ss_pred CCCCCCCccccccccccccCCCccccccccc----CCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT----HKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.. ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 205 ~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~ 261 (340)
T 3an0_A 205 VD--------SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG 261 (340)
T ss_dssp SC--------HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCS
T ss_pred cc--------ccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCcccc
Confidence 32 112233469999999999743 478999999999999999999999997543
No 237
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=5.3e-37 Score=370.90 Aligned_cols=262 Identities=27% Similarity=0.425 Sum_probs=213.0
Q ss_pred HHHHHhcCCCccceeeccCcEEEEEEEeC----CCcEEEEEEeccCCch-hhHhHHHHHHHHHhcCCCceeeeeeccccC
Q 002289 603 EMALATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 677 (941)
Q Consensus 603 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 677 (941)
+.....++|++.+.||+|+||+||+|.+. .+..||||+++..... ..+.+.+|+.++++++||||+++++++. +
T Consensus 384 ~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~ 462 (656)
T 2j0j_A 384 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E 462 (656)
T ss_dssp GTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-S
T ss_pred ccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-c
Confidence 44445678999999999999999999864 2567999998764332 3467899999999999999999999985 4
Q ss_pred CcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccc
Q 002289 678 GEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLS 757 (941)
Q Consensus 678 ~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla 757 (941)
+..++||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||++
T Consensus 463 ~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a 538 (656)
T 2j0j_A 463 NPVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLS 538 (656)
T ss_dssp SSCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCC
T ss_pred CceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCC
Confidence 5789999999999999999754 345899999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccc
Q 002289 758 RLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
+...... ........+|+.|+|||++.+..++.++|||||||++|||++ |..||....... ..
T Consensus 539 ~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-~~--------- 602 (656)
T 2j0j_A 539 RYMEDST------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND-VI--------- 602 (656)
T ss_dssp CSCCC----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HH---------
T ss_pred eecCCCc------ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-HH---------
Confidence 8654322 111223456789999999999999999999999999999997 999997654321 11
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
..+..+.....+..++..+.+++.+||+.+|.+||++.++++.|+.+..
T Consensus 603 ~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 603 GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 1122233344566777889999999999999999999999999998754
No 238
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=334.49 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=172.2
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..++|++.+.||+|+||.||+|... +|+.||+|++.... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4578999999999999999999975 58999999987543 34578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCC
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDI 765 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~ 765 (941)
|+++++|.+++... ...+++..++.++.|++.||.|||+.+ |+||||||+||+++.++.+||+|||.+.......
T Consensus 105 ~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~- 179 (314)
T 3com_A 105 YCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM- 179 (314)
T ss_dssp CCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBTTB-
T ss_pred cCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhhhc-
Confidence 99999999999643 345899999999999999999999999 9999999999999999999999999997653221
Q ss_pred CCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 766 EGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 766 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.......||..|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 180 ------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 229 (314)
T 3com_A 180 ------AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH 229 (314)
T ss_dssp ------SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred ------cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence 11234568999999999999999999999999999999999999997544
No 239
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=9.8e-38 Score=345.84 Aligned_cols=252 Identities=23% Similarity=0.402 Sum_probs=201.3
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhcC--CCceeeeeeccc
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLH--HRNLVSLVGYCD 675 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~nIv~l~~~~~ 675 (941)
....++|++.+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|++++++++ |+||+++++++.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 334678999999999999999999964 7899999998753321 2356788999999996 599999999999
Q ss_pred cCCcEEEEEecCCC-CCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-CCCcEEEee
Q 002289 676 EEGEQMLVYEFMSN-GTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD-HKFTAKVAD 753 (941)
Q Consensus 676 ~~~~~~LV~e~~~~-gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~-~~~~~kl~D 753 (941)
..+..++||||+.+ ++|.+++.... .+++..++.++.|+++||+|||+.+ |+||||||+||+++ +++.+||+|
T Consensus 119 ~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~D 193 (320)
T 3a99_A 119 RPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLID 193 (320)
T ss_dssp CSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECC
T ss_pred cCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEee
Confidence 99999999999976 89999997643 5889999999999999999999999 99999999999999 789999999
Q ss_pred eccccccCCCCCCCccccccccccccCCCcccccccccCCC-CchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHh
Q 002289 754 FGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKL-TDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQ 832 (941)
Q Consensus 754 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~ 832 (941)
||+++..... ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||......
T Consensus 194 fg~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--------- 255 (320)
T 3a99_A 194 FGSGALLKDT---------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI--------- 255 (320)
T ss_dssp CTTCEECCSS---------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---------
T ss_pred Cccccccccc---------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh---------
Confidence 9999865422 1233458999999999987765 67899999999999999999999642210
Q ss_pred hccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCC
Q 002289 833 SSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSS 912 (941)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa 912 (941)
.... ..++.. ..+...+++.+||..||++|||+
T Consensus 256 -------~~~~-~~~~~~---------------------------------------~~~~~~~li~~~l~~dp~~Rps~ 288 (320)
T 3a99_A 256 -------IRGQ-VFFRQR---------------------------------------VSSECQHLIRWCLALRPSDRPTF 288 (320)
T ss_dssp -------HHCC-CCCSSC---------------------------------------CCHHHHHHHHHHTCSSGGGSCCH
T ss_pred -------hccc-cccccc---------------------------------------CCHHHHHHHHHHccCChhhCcCH
Confidence 0000 000100 11122357777888889999999
Q ss_pred ccCCCCCCCCCCCC
Q 002289 913 SSMLKHPYVSSDVS 926 (941)
Q Consensus 913 ~e~L~Hpwf~~~~~ 926 (941)
+|+++||||+....
T Consensus 289 ~~ll~hp~~~~~~~ 302 (320)
T 3a99_A 289 EEIQNHPWMQDVLL 302 (320)
T ss_dssp HHHHTSGGGSSCCC
T ss_pred HHHhcCHhhcCccC
Confidence 99999999987654
No 240
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5.5e-37 Score=354.17 Aligned_cols=202 Identities=26% Similarity=0.322 Sum_probs=157.5
Q ss_pred cCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEEecC
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEFM 687 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~e~~ 687 (941)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++.+.+..++||||+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 345556889999999998776668999999998652 234678999999886 8999999999999999999999999
Q ss_pred CCCCHHHHHhhcCCCC-----ccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC-------------CcE
Q 002289 688 SNGTLRDQLSAKSKEP-----LGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK-------------FTA 749 (941)
Q Consensus 688 ~~gsL~~~l~~~~~~~-----l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~-------------~~~ 749 (941)
+ |+|.+++....... ..+..++.++.||+.||+|||+++ |+||||||+|||++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEE
Confidence 5 79999997653221 123345789999999999999999 9999999999999754 489
Q ss_pred EEeeeccccccCCCCCCCccccccccccccCCCccccccccc-------CCCCchhHhHHHHHHHHHHHh-CCCCCCCC
Q 002289 750 KVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-------HKLTDKSDVYSLGVVFLELLT-GMQPISHG 820 (941)
Q Consensus 750 kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~ 820 (941)
||+|||+++........ .........||+.|+|||++.+ ..++.++|||||||++|||++ |+.||...
T Consensus 168 kL~DFG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~ 243 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSS---FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK 243 (434)
T ss_dssp EECCCTTCEECCC-----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCST
T ss_pred EEcccccceecCCCCcc---ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCc
Confidence 99999999876432210 0111234579999999999976 678999999999999999999 99999654
No 241
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=5.4e-37 Score=364.16 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=174.2
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeecccc------CCc
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE------EGE 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~------~~~ 679 (941)
.++|++.+.||+|+||+||+|.+. +|+.||||+++... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 378999999999999999999974 68999999987643 3335678999999999999999999998755 677
Q ss_pred EEEEEecCCCCCHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCc---EEEeeec
Q 002289 680 QMLVYEFMSNGTLRDQLSAKS-KEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFT---AKVADFG 755 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~---~kl~DFG 755 (941)
.++||||+++|+|.+++.... ...+++..++.++.|++.||+|||+.+ |+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999997643 235888999999999999999999999 999999999999997664 9999999
Q ss_pred cccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchh
Q 002289 756 LSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNI 823 (941)
Q Consensus 756 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~ 823 (941)
+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 170 ~a~~~~~~~--------~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~ 229 (676)
T 3qa8_A 170 YAKELDQGE--------LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP 229 (676)
T ss_dssp CCCBTTSCC--------CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH
T ss_pred ccccccccc--------ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch
Confidence 998654322 223456899999999999999999999999999999999999999765443
No 242
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.6e-36 Score=334.97 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=172.1
Q ss_pred cchHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcC--CCceeeeeecc
Q 002289 599 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLH--HRNLVSLVGYC 674 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~--h~nIv~l~~~~ 674 (941)
+.++.+....++|++.+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++ |+||+++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 97 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 97 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence 344445556788999999999999999999988899999999875432 33467899999999997 59999999999
Q ss_pred ccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeee
Q 002289 675 DEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADF 754 (941)
Q Consensus 675 ~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DF 754 (941)
...+..++||| +.+++|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+||++++ +.+||+||
T Consensus 98 ~~~~~~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Df 170 (313)
T 3cek_A 98 ITDQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDF 170 (313)
T ss_dssp ECSSEEEEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCC
T ss_pred ecCCEEEEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeec
Confidence 99999999999 45889999997653 5889999999999999999999999 999999999999964 89999999
Q ss_pred ccccccCCCCCCCccccccccccccCCCccccccccc-----------CCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 755 GLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT-----------HKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 755 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
|+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 171 g~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 243 (313)
T 3cek_A 171 GIANQMQPDTT-----SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII 243 (313)
T ss_dssp SSSCC-------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred cccccccCccc-----cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH
Confidence 99986543211 111234468999999999875 468889999999999999999999997543
No 243
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=354.12 Aligned_cols=258 Identities=24% Similarity=0.332 Sum_probs=188.4
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV~e 685 (941)
...+|.+.+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +||||+++++++.+.+..++|||
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 4456888999999999997655556889999999875332 3467899999999 79999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC-----CCcEEEeeecccccc
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH-----KFTAKVADFGLSRLA 760 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~-----~~~~kl~DFGla~~~ 760 (941)
|++ |+|.+++..... ...+..++.++.||++||+|||+++ |+||||||+|||++. ...+||+|||+|+..
T Consensus 99 ~~~-g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~ 173 (432)
T 3p23_A 99 LCA-ATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL 173 (432)
T ss_dssp CCS-EEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred CCC-CCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence 995 699999976542 3444456789999999999999999 999999999999953 346889999999876
Q ss_pred CCCCCCCccccccccccccCCCcccccccc---cCCCCchhHhHHHHHHHHHHHh-CCCCCCCCchhHHHHHHHHhhccc
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFL---THKLTDKSDVYSLGVVFLELLT-GMQPISHGKNIVREVNIAYQSSMM 836 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDVwSlG~ll~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~ 836 (941)
..... .........||+.|+|||++. ...++.++|||||||++|||++ |..||....... ....
T Consensus 174 ~~~~~----~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~--~~~~------ 241 (432)
T 3p23_A 174 AVGRH----SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ--ANIL------ 241 (432)
T ss_dssp ----------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH--HHHH------
T ss_pred cCCCc----ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH--HHHH------
Confidence 43211 012234467999999999997 4567889999999999999999 888985432211 1100
Q ss_pred hhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCC
Q 002289 837 FSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSML 916 (941)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L 916 (941)
..... ......+.... ..+.+||.+||..||++|||++|++
T Consensus 242 ---~~~~~--------------------~~~~~~~~~~~----------------~~~~~li~~~L~~dP~~Rps~~evl 282 (432)
T 3p23_A 242 ---LGACS--------------------LDCLHPEKHED----------------VIARELIEKMIAMDPQKRPSAKHVL 282 (432)
T ss_dssp ---TTCCC--------------------CTTSCTTCHHH----------------HHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred ---hccCC--------------------ccccCcccccc----------------HHHHHHHHHHHhCCHhhCCCHHHHH
Confidence 00000 00000000000 0123678889999999999999999
Q ss_pred CCCCCCC
Q 002289 917 KHPYVSS 923 (941)
Q Consensus 917 ~Hpwf~~ 923 (941)
+||||.+
T Consensus 283 ~hp~f~~ 289 (432)
T 3p23_A 283 KHPFFWS 289 (432)
T ss_dssp TSTTTCC
T ss_pred hCccccC
Confidence 9999975
No 244
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.7e-36 Score=329.65 Aligned_cols=264 Identities=22% Similarity=0.319 Sum_probs=193.3
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCceeeeeecccc----------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE---------- 676 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~---------- 676 (941)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 467899999999999999999964 7899999998642 2334678999999999999999999998744
Q ss_pred ---CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEee
Q 002289 677 ---EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVAD 753 (941)
Q Consensus 677 ---~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~D 753 (941)
.+..++||||+++|+|.+++.... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~d 159 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGD 159 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEee
Confidence 457899999999999999997543 45788999999999999999999999 99999999999999999999999
Q ss_pred eccccccCCCCCCCc-------cccccccccccCCCcccccccccC-CCCchhHhHHHHHHHHHHHhCCCCCCCCchhHH
Q 002289 754 FGLSRLAPVPDIEGI-------VPAHVSTVVKGTPGYLDPEYFLTH-KLTDKSDVYSLGVVFLELLTGMQPISHGKNIVR 825 (941)
Q Consensus 754 FGla~~~~~~~~~~~-------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~ 825 (941)
||+++.......... ..........||..|+|||++.+. .++.++|||||||++|||++ ||....+...
T Consensus 160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~ 236 (303)
T 1zy4_A 160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVN 236 (303)
T ss_dssp CCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHH
T ss_pred CcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHH
Confidence 999986543210000 001223345689999999999864 78999999999999999998 5543222111
Q ss_pred HHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCC
Q 002289 826 EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSK 905 (941)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~d 905 (941)
.... +.......|..-+ ........+++.+||..|
T Consensus 237 ~~~~-----------------------------~~~~~~~~~~~~~----------------~~~~~~~~~li~~~l~~d 271 (303)
T 1zy4_A 237 ILKK-----------------------------LRSVSIEFPPDFD----------------DNKMKVEKKIIRLLIDHD 271 (303)
T ss_dssp HHHH-----------------------------HHSTTCCCCTTCC----------------TTTSHHHHHHHHHHTCSS
T ss_pred HHHh-----------------------------ccccccccCcccc----------------ccchHHHHHHHHHHHhcC
Confidence 1110 0000000010000 011112235777889999
Q ss_pred CCCCCCCccCCCCCCCCCC
Q 002289 906 EETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 906 P~~R~sa~e~L~Hpwf~~~ 924 (941)
|++|||++|+++||||+..
T Consensus 272 p~~Rps~~~ll~h~~~~~~ 290 (303)
T 1zy4_A 272 PNKRPGARTLLNSGWLPVK 290 (303)
T ss_dssp GGGSCCHHHHHHSSCSCCC
T ss_pred cccCcCHHHHhCCCCcCCC
Confidence 9999999999999999764
No 245
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=340.66 Aligned_cols=266 Identities=22% Similarity=0.320 Sum_probs=205.6
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCC
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 678 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~ 678 (941)
..++....++|++.+.||+|+||.||+|.+.+ .||+|+++.... ...+.+.+|+.++++++|+||+++++++...+
T Consensus 25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 102 (319)
T 2y4i_B 25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP 102 (319)
T ss_dssp GGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS
T ss_pred cccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence 34555567889999999999999999999754 499999875332 22356888999999999999999999999999
Q ss_pred cEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 679 EQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 679 ~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..++||||+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++ ++.+||+|||+++
T Consensus 103 ~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~ 177 (319)
T 2y4i_B 103 HLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFS 177 (319)
T ss_dssp CEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC
T ss_pred ceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCcc
Confidence 999999999999999999654 345889999999999999999999999 99999999999998 6799999999987
Q ss_pred ccCCCCCCCccccccccccccCCCccccccccc---------CCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 002289 759 LAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLT---------HKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNI 829 (941)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~ 829 (941)
........ ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...........
T Consensus 178 ~~~~~~~~--~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~- 254 (319)
T 2y4i_B 178 ISGVLQAG--RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQ- 254 (319)
T ss_dssp ------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHH-
T ss_pred cccccccc--ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-
Confidence 65322111 11122334568999999999874 4578899999999999999999999976543211111
Q ss_pred HHhhccchhhhcCCCCC-CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 830 AYQSSMMFSVIDGNMGS-YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 830 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
+..+.... .+..++..+.+++..||..+|.+||++.++++.|+.+..
T Consensus 255 ---------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~ 302 (319)
T 2y4i_B 255 ---------MGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPK 302 (319)
T ss_dssp ---------HHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred ---------hccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 11111111 122345678899999999999999999999999987654
No 246
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=333.25 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=165.0
Q ss_pred HHHhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch------hhHhHHHHHHHHHhc----CCCceeeeeec
Q 002289 605 ALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRL----HHRNLVSLVGY 673 (941)
Q Consensus 605 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~nIv~l~~~ 673 (941)
....++|++.+.||+|+||.||+|+.. +++.||||+++..... ....+.+|+++++++ +|+||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 345678999999999999999999864 6899999999754321 234567899999998 89999999999
Q ss_pred cccCCcEEEEEec-CCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc-CCCcEEE
Q 002289 674 CDEEGEQMLVYEF-MSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD-HKFTAKV 751 (941)
Q Consensus 674 ~~~~~~~~LV~e~-~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~-~~~~~kl 751 (941)
+...+..++|||| +++++|.+++.... .+++..++.++.|+++||+|||+++ |+||||||+||+++ .++.+||
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEE
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEE
Confidence 9999999999999 78999999997644 4899999999999999999999999 99999999999999 8899999
Q ss_pred eeeccccccCCCCCCCccccccccccccCCCcccccccccCCCC-chhHhHHHHHHHHHHHhCCCCCCC
Q 002289 752 ADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLT-DKSDVYSLGVVFLELLTGMQPISH 819 (941)
Q Consensus 752 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDVwSlG~ll~elltG~~Pf~~ 819 (941)
+|||+++...... .....||..|+|||++.+..+. .++|||||||++|||++|+.||..
T Consensus 182 ~dfg~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 241 (312)
T 2iwi_A 182 IDFGSGALLHDEP---------YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER 241 (312)
T ss_dssp CCCSSCEECCSSC---------BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred EEcchhhhcccCc---------ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence 9999998654321 2344589999999999877664 589999999999999999999964
No 247
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=5.3e-36 Score=332.91 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=153.4
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch-hhHhHHHHHH-HHHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GEKEFLTEIQ-FLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||.||+|... +|+.||||+++..... ...++..|+. +++.++||||+++++++...+..++|
T Consensus 20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv 99 (327)
T 3aln_A 20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWIC 99 (327)
T ss_dssp CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEE
T ss_pred CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEE
Confidence 3478889999999999999999975 7899999999764332 3345666666 77778999999999999999999999
Q ss_pred EecCCCCCHHHHHhh---cCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 684 YEFMSNGTLRDQLSA---KSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
|||++ |+|.+++.. .....+++..+..++.|+++||.|||+. + |+||||||+||+++.++.+||+|||+++.
T Consensus 100 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 100 MELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp ECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred EeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 99996 588887753 2345689999999999999999999998 8 99999999999999999999999999976
Q ss_pred cCCCCCCCccccccccccccCCCccccccc----ccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYF----LTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
..... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||....
T Consensus 176 ~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 233 (327)
T 3aln_A 176 LVDSI--------AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN 233 (327)
T ss_dssp --------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-
T ss_pred ccccc--------ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence 53221 12234689999999998 45678999999999999999999999997543
No 248
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-35 Score=343.72 Aligned_cols=303 Identities=17% Similarity=0.227 Sum_probs=247.3
Q ss_pred CCCCCCCCceEecCCCC---CCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCC-CCccCCccccceec
Q 002289 61 DPCTSNWTGVLCFNTTM---DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLL 136 (941)
Q Consensus 61 ~~c~~~w~gv~C~~~~~---~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 136 (941)
..|.|.+..|.|....+ +....++++|+|++|.+++..+..|+++++|++|+|++|.+.+.+ |..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 34544455589976543 334468999999999999988999999999999999999998655 57899999999999
Q ss_pred ccCccccCCCCcccCCcCccceeecccccccccCCcc--cccccccceEecccccccccCchh-ccCCCccceeeccCCc
Q 002289 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIPPE-LSRLPSLVHMLLDNNN 213 (941)
Q Consensus 137 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~ 213 (941)
|++|++++..|..|+++++|++|+|++|.+++..+.. |..+++|++|+|++|++++..|.. |.++++|++|+|++|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999999888999999999999999999999866554 999999999999999999887876 7899999999999999
Q ss_pred CCCCCCccCCCC----------------------------------CCCCEEeccCCcCCCC------------------
Q 002289 214 LTGYLPPELSEL----------------------------------PKLLILQLDNNNFEGT------------------ 241 (941)
Q Consensus 214 l~~~~p~~~~~l----------------------------------~~L~~L~Ls~N~l~~~------------------ 241 (941)
+++..+..+..+ ++|+.|+|++|++++.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 998877665433 4555555555554320
Q ss_pred --------------------------------------------CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCccc
Q 002289 242 --------------------------------------------TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLG 277 (941)
Q Consensus 242 --------------------------------------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~ 277 (941)
..|..|..+++|++|+|++|++++.++. .
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~ 318 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-------A 318 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-------T
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-------H
Confidence 2455666777777777777777765443 1
Q ss_pred ccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--C
Q 002289 278 YLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--N 355 (941)
Q Consensus 278 ~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~ 355 (941)
+....+|++|+|++|+|++..|..|.++++|+.|+|++|++++..|..+..+ ++|+.|+|++|+|+.++... .
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTTTTTT
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHhHhcc
Confidence 1223567999999999998889999999999999999999998888888664 46679999999999998755 6
Q ss_pred CCCCcEEEecCCCCccCCCc
Q 002289 356 IPPNVTVRLRGNPFCLNTNA 375 (941)
Q Consensus 356 ~~~~~~l~l~~Np~~c~c~~ 375 (941)
++.++.|+|++|||.|+|+.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 88999999999999999983
No 249
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=347.30 Aligned_cols=313 Identities=22% Similarity=0.227 Sum_probs=265.9
Q ss_pred CCCC--CCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccccee
Q 002289 62 PCTS--NWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (941)
Q Consensus 62 ~c~~--~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 135 (941)
.|.| .|..|.|....+. ....+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 6 ~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 6 RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 4555 4678999765432 234579999999999999888899999999999999999998889999999999999
Q ss_pred cccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCC
Q 002289 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 99999999777778999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCC-C----------------CCCCcccc
Q 002289 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-L----------------SRIPNLGY 278 (941)
Q Consensus 216 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~----------------~~l~~l~~ 278 (941)
+..+..|.++++|+.|+|++|.+.+ ..+..|..+++|++|++++|++.+.++. . ..++...+
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred ccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 7777789999999999999999987 5667888899899888888876554332 1 11111123
Q ss_pred cccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CC
Q 002289 279 LLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NI 356 (941)
Q Consensus 279 l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~ 356 (941)
....+|+.|+|++|+|++..+..|.++++|+.|+|++|++++..|..+..+ ++|+.|+|++|+|+.++... .+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL-----NYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC-----TTCCEEECCSSCCSCCCGGGBSCG
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc-----ccCCEEECCCCcCceeCHhHcCCC
Confidence 344678899999999988888888899999999999999988778877654 45679999999999997654 57
Q ss_pred CCCcEEEecCCCCccCCCcccccC
Q 002289 357 PPNVTVRLRGNPFCLNTNAEQFCG 380 (941)
Q Consensus 357 ~~~~~l~l~~Np~~c~c~~~~~~~ 380 (941)
+.+++|+|++|||.|+|.+.++-.
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHHHT
T ss_pred cccCEEEccCCCccCccchHhHHh
Confidence 789999999999999999877644
No 250
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.8e-35 Score=319.70 Aligned_cols=201 Identities=28% Similarity=0.431 Sum_probs=173.4
Q ss_pred HhcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc--hhhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
..++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 3578999999999999999999975 689999999865322 2356789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCC---CcEEEeeecccccc
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHK---FTAKVADFGLSRLA 760 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~---~~~kl~DFGla~~~ 760 (941)
|||+++++|.+++.... .+++..++.++.|++.||+|||+++ |+||||||+||+++.+ +.+||+|||++...
T Consensus 100 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~ 174 (287)
T 2wei_A 100 GELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (287)
T ss_dssp ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred EEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence 99999999999886543 4889999999999999999999999 9999999999999754 47999999999865
Q ss_pred CCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCc
Q 002289 761 PVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK 821 (941)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~ 821 (941)
.... ......||+.|+|||.+.+ .++.++||||||+++|||++|+.||....
T Consensus 175 ~~~~--------~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~ 226 (287)
T 2wei_A 175 QQNT--------KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN 226 (287)
T ss_dssp CCCS--------SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cCCC--------ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC
Confidence 4321 1223457889999999876 48999999999999999999999997544
No 251
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=331.56 Aligned_cols=202 Identities=25% Similarity=0.382 Sum_probs=153.6
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchh-hH-hHHHHHHHHHhcCCCceeeeeeccccCCcEEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-EK-EFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~-~~-~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.++|++.+.||+|+||.||+|.+. +|+.||||++....... .. .+.++..+++.++||||+++++++...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467888999999999999999975 78999999997644322 22 3444555788889999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 685 EFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 685 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
||+ ++.+..+.... ...+++..++.++.|+++||+|||++ + |+||||||+||+++.++.+||+|||++......
T Consensus 104 e~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CCC-SEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecc-CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 999 55666655432 34589999999999999999999985 8 999999999999999999999999999765322
Q ss_pred CCCCccccccccccccCCCcccccccc-----cCCCCchhHhHHHHHHHHHHHhCCCCCCCCch
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFL-----THKLTDKSDVYSLGVVFLELLTGMQPISHGKN 822 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~ 822 (941)
. ......||+.|+|||++. ...++.++|||||||++|||++|+.||.....
T Consensus 179 ~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 234 (318)
T 2dyl_A 179 K--------AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT 234 (318)
T ss_dssp ----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred c--------cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc
Confidence 1 123346899999999994 56788999999999999999999999976443
No 252
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=4e-36 Score=335.28 Aligned_cols=192 Identities=23% Similarity=0.266 Sum_probs=159.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc--------hhhHhHHHHHHHHHhcC---------------
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLH--------------- 663 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~--------------- 663 (941)
..++|++.+.||+|+||+||+|++ +|+.||||++..... ...+.+.+|++++++++
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 356788999999999999999998 789999999875432 12367889999999886
Q ss_pred -----------CCceeeeeecccc-------------CCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHH
Q 002289 664 -----------HRNLVSLVGYCDE-------------EGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRG 719 (941)
Q Consensus 664 -----------h~nIv~l~~~~~~-------------~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~g 719 (941)
||||+++++++.+ .+..++||||+++|++.+.+.+ ..+++..++.++.||+.|
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 5555555555554 6789999999999977666633 358999999999999999
Q ss_pred HHHhh-cCCCCCeEeccCCCCcEEEcCCC--------------------cEEEeeeccccccCCCCCCCccccccccccc
Q 002289 720 ILYLH-TEADPPVFHRDIKASNILLDHKF--------------------TAKVADFGLSRLAPVPDIEGIVPAHVSTVVK 778 (941)
Q Consensus 720 L~yLH-~~~~~~ivH~DLkp~NILl~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~ 778 (941)
|+||| +++ |+||||||+|||++.++ .+||+|||+|+.... ....
T Consensus 174 L~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------------~~~~ 238 (336)
T 2vuw_A 174 LAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------------GIVV 238 (336)
T ss_dssp HHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------------TEEE
T ss_pred HHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------------CcEE
Confidence 99999 899 99999999999999887 999999999986532 1346
Q ss_pred cCCCcccccccccCCCCchhHhHHHHHH-HHHHHhCCCCCC
Q 002289 779 GTPGYLDPEYFLTHKLTDKSDVYSLGVV-FLELLTGMQPIS 818 (941)
Q Consensus 779 gt~~y~aPE~~~~~~~~~~sDVwSlG~l-l~elltG~~Pf~ 818 (941)
||+.|+|||++.+.. +.++||||+|++ .+++++|..||.
T Consensus 239 gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 239 FCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp CCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred EeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 999999999998776 889999998777 778888988873
No 253
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-34 Score=359.15 Aligned_cols=284 Identities=30% Similarity=0.460 Sum_probs=246.6
Q ss_pred eeeEEEecCCCCCccCCccccC--CCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 83 HLRELQLLNLNLSGNLSPEIGR--LSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+++.|++++|.++|.+++.+.. +++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|..|+++++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 7899999999999988888877 88999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|++|.+++.+|..+..+++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|..++++++|++|+|++|+++|
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCC-CCCCCcc-------------------------------------------
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNL------------------------------------------- 276 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l------------------------------------------- 276 (941)
.+|..+.++++|+.|+|++|+++|.+|. +.....+
T Consensus 529 -~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 -NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp -ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred -cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 6899999999999999999999987774 1110000
Q ss_pred -------------------cccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCcccc
Q 002289 277 -------------------GYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATET 337 (941)
Q Consensus 277 -------------------~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L 337 (941)
.+....+|+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|..++.++. |
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~-----L 682 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-----L 682 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-----C
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC-----C
Confidence 0112356889999999999999999999999999999999999999999887644 5
Q ss_pred ceEEccCCCCCC-CCCCC-CCCCCcEEEecCCCCccC
Q 002289 338 FILDFQNNNLTN-ISGSF-NIPPNVTVRLRGNPFCLN 372 (941)
Q Consensus 338 ~~L~Ls~N~l~~-~~~~~-~~~~~~~l~l~~Np~~c~ 372 (941)
+.|||++|+|++ +|..+ .+..++.|+|++|++...
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 689999999985 46555 678899999999987653
No 254
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.1e-33 Score=310.05 Aligned_cols=240 Identities=20% Similarity=0.320 Sum_probs=183.0
Q ss_pred hcCCCcc-ceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHH-HhcCCCceeeeeecccc----CCcE
Q 002289 608 TNNFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFL-SRLHHRNLVSLVGYCDE----EGEQ 680 (941)
Q Consensus 608 ~~~y~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~nIv~l~~~~~~----~~~~ 680 (941)
.++|.+. +.||+|+||.||+|... +++.||+|+++. ...+.+|++++ +..+||||+++++++.. .+..
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3567676 77999999999999974 789999999864 24577889887 55699999999999866 6778
Q ss_pred EEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcC---CCcEEEeeeccc
Q 002289 681 MLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDH---KFTAKVADFGLS 757 (941)
Q Consensus 681 ~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~---~~~~kl~DFGla 757 (941)
++||||+++|+|.+++.......+++..++.++.|++.||+|||+++ |+||||||+||+++. ++.+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998876667999999999999999999999999 999999999999998 789999999998
Q ss_pred cccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccch
Q 002289 758 RLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF 837 (941)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~ 837 (941)
.... +..++.++|||||||++|||++|+.||........ ...+.
T Consensus 168 ~~~~-----------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------~~~~~ 211 (299)
T 3m2w_A 168 KETT-----------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------SPGMK 211 (299)
T ss_dssp EECT-----------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------CCSC
T ss_pred cccc-----------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-------hHHHH
Confidence 6432 13457799999999999999999999965432110 00000
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCC
Q 002289 838 SVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLK 917 (941)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~ 917 (941)
..+.......+.... ....+...+++.+||..||++|||++|+|+
T Consensus 212 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 212 TRIRMGQYEFPNPEW-----------------------------------SEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CSSCTTCCSSCHHHH-----------------------------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHhhccccCCchhc-----------------------------------ccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 111111111111100 112223346778888888899999999999
Q ss_pred CCCCCCCCC
Q 002289 918 HPYVSSDVS 926 (941)
Q Consensus 918 Hpwf~~~~~ 926 (941)
||||.....
T Consensus 257 hp~~~~~~~ 265 (299)
T 3m2w_A 257 HPWIMQSTK 265 (299)
T ss_dssp SHHHHTGGG
T ss_pred Chhhccccc
Confidence 999876543
No 255
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.4e-33 Score=306.97 Aligned_cols=229 Identities=12% Similarity=0.069 Sum_probs=185.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCch---hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.++|++.+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|++++++++||||+++++++...+..++|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 467999999999999999999975 5899999999864332 236789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++... .....+.+++.|++.||+|||+++ |+||||||+|||++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp EECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEecc--------
Confidence 9999999999999542 244567889999999999999999 9999999999999999999998543
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGN 843 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (941)
|++ .++.++|||||||++|||+||+.||........ .......+.+.
T Consensus 175 -------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-------~~~~~~~~~~~ 221 (286)
T 3uqc_A 175 -------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSG-------LAPAERDTAGQ 221 (286)
T ss_dssp -------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC-------SEECCBCTTSC
T ss_pred -------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchh-------hHHHHHHhccC
Confidence 333 268899999999999999999999975432100 00000111111
Q ss_pred CC---CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhHh
Q 002289 844 MG---SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWN 885 (941)
Q Consensus 844 ~~---~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~L~~~~~ 885 (941)
.. .....++..+.+++.+||+.||++| ++.++++.|+.+..
T Consensus 222 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 222 PIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp BCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred CCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 11 1123456779999999999999999 99999999998754
No 256
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.9e-34 Score=346.92 Aligned_cols=240 Identities=20% Similarity=0.322 Sum_probs=193.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC--CCcEEEEEEeccCC-chhhHhHHHHHHHHHhcCCCceeeeeeccccCCc-----
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP--DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE----- 679 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~----- 679 (941)
.++|++.+.||+|+||+||+|.+. +|+.||||++.... ......+.+|++++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 468999999999999999999975 68999999986533 2345678999999999999999999999977665
Q ss_pred EEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 680 QMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 680 ~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
.++||||+++++|.+++.. .+++..++.++.||+.||+|||+++ |+||||||+|||++.+ .+||+|||+++.
T Consensus 159 ~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred eEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchh
Confidence 7999999999999988743 5899999999999999999999999 9999999999999986 999999999986
Q ss_pred cCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhh
Q 002289 760 APVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV 839 (941)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~ 839 (941)
.... ....||+.|+|||++.+.. +.++|||||||++|||++|..||..... ..
T Consensus 231 ~~~~-----------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~ 283 (681)
T 2pzi_A 231 INSF-----------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYV---------------DG 283 (681)
T ss_dssp TTCC-----------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SS
T ss_pred cccC-----------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccc---------------cc
Confidence 5321 3356899999999987764 8899999999999999999888753110 00
Q ss_pred hcCCCCCCChHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHhH
Q 002289 840 IDGNMGSYPSECVEKFIKLALKCCQDETDARPS-MSEVMRELESIW 884 (941)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs-~~~v~~~L~~~~ 884 (941)
+. ........+..+.+++.+|++.+|.+||+ ++++.+.+..+.
T Consensus 284 ~~--~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 327 (681)
T 2pzi_A 284 LP--EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL 327 (681)
T ss_dssp CC--TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred cc--ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence 00 00011234467889999999999999995 555666665543
No 257
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2.9e-33 Score=320.85 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=182.1
Q ss_pred hcCCCccceeeccCcEEEEEEEeC-CCcEEEEEEeccCCchh---hHhHHHHHHHHHhcCC-Cceeeee-----------
Q 002289 608 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG---EKEFLTEIQFLSRLHH-RNLVSLV----------- 671 (941)
Q Consensus 608 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h-~nIv~l~----------- 671 (941)
..+|...+.||+|+||+||+|++. +|+.||||+++...... .+.+.+|+.+++.++| +|.....
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 345667889999999999999954 79999999988433222 4678999999999987 3221111
Q ss_pred ----------ecccc-----CCcEEEEEecCCCCCHHHHHh-----hcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 002289 672 ----------GYCDE-----EGEQMLVYEFMSNGTLRDQLS-----AKSKEPLGFAMRLSIALGSSRGILYLHTEADPPV 731 (941)
Q Consensus 672 ----------~~~~~-----~~~~~LV~e~~~~gsL~~~l~-----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i 731 (941)
.++.. ....+++|+++ +++|.++++ ......+++..++.++.|+++||+|||+++ |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---L 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---E
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC---c
Confidence 11111 22467888876 789999985 233446889999999999999999999999 9
Q ss_pred EeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCccccccc----------ccCCCCchhHhH
Q 002289 732 FHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYF----------LTHKLTDKSDVY 801 (941)
Q Consensus 732 vH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDVw 801 (941)
+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++ .+..++.++|||
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~----------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dvw 301 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTW 301 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTE----------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCC----------ccccCCC-CceeCchhhhccccccccccCcCCCchhhHH
Confidence 9999999999999999999999999875421 1334457 999999999 555688899999
Q ss_pred HHHHHHHHHHhCCCCCCCCchhHHHHHHHHhhccchhhhcCCCCCCChHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 002289 802 SLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMR 878 (941)
Q Consensus 802 SlG~ll~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~ 878 (941)
||||++|||++|+.||...... .....++. ....+ ++.+.+++..||+.+|++||++.++++
T Consensus 302 SlGvil~elltg~~Pf~~~~~~----------~~~~~~~~-~~~~~----~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 302 TLGLAIYWIWCADLPNTDDAAL----------GGSEWIFR-SCKNI----PQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHHHHHHHSSCCCCTTGGG----------SCSGGGGS-SCCCC----CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCcchh----------hhHHHHHh-hcccC----CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 9999999999999999754321 11111221 12223 367889999999999999999877753
No 258
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-32 Score=330.92 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=96.5
Q ss_pred CceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCcccc
Q 002289 68 TGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (941)
Q Consensus 68 ~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 143 (941)
..|.|....+. +...++++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 34777653321 23356777777777777666667777777777777777777666666777777777777777777
Q ss_pred CCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccc-cCchhccCCCccceeeccCCcCCC
Q 002289 144 GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNLTG 216 (941)
Q Consensus 144 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~ 216 (941)
+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++|++++ .+|..|+++++|++|+|++|++++
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 6666677777777777777776665555566666666666666666654 345556666666666655555443
No 259
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-32 Score=313.11 Aligned_cols=308 Identities=18% Similarity=0.166 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCCCCCceEecCCCC--------------CCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCC
Q 002289 54 LSNWNRGDPCTSNWTGVLCFNTTM--------------DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKIS 119 (941)
Q Consensus 54 ~~~w~~~~~c~~~w~gv~C~~~~~--------------~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 119 (941)
+++|.....|++.|.+..|..... .-...+++.|++.++.++...+..|..+++|++|+|++|.++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~ 82 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc
Confidence 568998888988766665532110 012367888888888887654455788888999999888888
Q ss_pred CCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhcc
Q 002289 120 GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELS 199 (941)
Q Consensus 120 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 199 (941)
+..+..|..+++|++|+|++|++++..|..|+++++|++|+|++|.++...+..|.++++|++|+|++|++++..+..|.
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 77777888888899999998888887788888888899999988888865556678888888899988888877777888
Q ss_pred CCCccceeeccCCcCCCCCCccCCCC-------------------------------------CCCCEEeccCCcCCCCC
Q 002289 200 RLPSLVHMLLDNNNLTGYLPPELSEL-------------------------------------PKLLILQLDNNNFEGTT 242 (941)
Q Consensus 200 ~l~~L~~L~L~~N~l~~~~p~~~~~l-------------------------------------~~L~~L~Ls~N~l~~~~ 242 (941)
.+++|++|++++|++++.....+.++ ++|+.|+|++|.+++
T Consensus 163 ~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-- 240 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-- 240 (390)
T ss_dssp SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--
T ss_pred CCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--
Confidence 88888888888888885432222222 245555555555543
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 322 (941)
...+..+++|++|+|++|.+++.+|. .+....+|++|+|++|+|++ +|..+..+++|+.|+|++|+++ .+
T Consensus 241 -~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~ 310 (390)
T 3o6n_A 241 -TAWLLNYPGLVEVDLSYNELEKIMYH-------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 310 (390)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESG-------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred -cHHHcCCCCccEEECCCCcCCCcChh-------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ec
Confidence 14566677777777777777655432 12223456788888888874 4556677788888888888887 56
Q ss_pred CcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCccccc
Q 002289 323 PSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQFC 379 (941)
Q Consensus 323 p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~~~~ 379 (941)
|..+..+ ++|+.|+|++|+|+.++ ...++.++.|++++|||.|+|....+.
T Consensus 311 ~~~~~~l-----~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 311 ERNQPQF-----DRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp GGGHHHH-----TTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred Ccccccc-----CcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchhHHHHHH
Confidence 6666543 45679999999999886 236788999999999999998654443
No 260
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=8.4e-32 Score=326.34 Aligned_cols=309 Identities=18% Similarity=0.225 Sum_probs=240.1
Q ss_pred CceEecCCCC---CC-CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCcccc
Q 002289 68 TGVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (941)
Q Consensus 68 ~gv~C~~~~~---~~-~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 143 (941)
..|.|....+ +. -..++++|+|++|+|++..+..|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3467875432 22 3357999999999999877789999999999999999999888889999999999999999999
Q ss_pred CCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccc-cCchhccCCCccceeeccCCcCCCCCCccC
Q 002289 144 GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNLTGYLPPEL 222 (941)
Q Consensus 144 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 222 (941)
+..+..|.++++|++|+|++|+|++..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|+|++..+..|
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 8777889999999999999999998888889999999999999999976 457888899999999999998765433211
Q ss_pred C-------------------------------------------------------------------------------
Q 002289 223 S------------------------------------------------------------------------------- 223 (941)
Q Consensus 223 ~------------------------------------------------------------------------------- 223 (941)
.
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 002289 224 -------------------------------------------------------------------------------- 223 (941)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (941)
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence
Q ss_pred ---------------CCCCCCEEeccCCcCCCC-----------------------------------------------
Q 002289 224 ---------------ELPKLLILQLDNNNFEGT----------------------------------------------- 241 (941)
Q Consensus 224 ---------------~l~~L~~L~Ls~N~l~~~----------------------------------------------- 241 (941)
.+++|+.|++++|.+...
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 123444455555544210
Q ss_pred --CcchhccCCCCCcEEEccCCCCcCCCCCC-CCCCcc-----------------cccccCCcCEEEccCCcCCCCcchh
Q 002289 242 --TIPASYSNMSKLLKLSLRNCSLQGPMPDL-SRIPNL-----------------GYLLSLNITTIKLSNNKLTGTIPSN 301 (941)
Q Consensus 242 --~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~l-----------------~~l~~~~L~~L~Ls~N~l~~~~p~~ 301 (941)
..+..|.++++|+.++++.|.+++..+.. ..++.+ .+....+|++|+|++|+|++..|..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 01123444555666666666666554431 111111 1223457999999999999999999
Q ss_pred hcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CC-CCCcEEEecCCCCccCCCcccc
Q 002289 302 FSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NI-PPNVTVRLRGNPFCLNTNAEQF 378 (941)
Q Consensus 302 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~-~~~~~l~l~~Np~~c~c~~~~~ 378 (941)
|.++++|+.|+|++|+|++..|..+..+ ++|++|||++|+|++++... .+ ..++.|+|++|||.|||++.+|
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCL-----NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTC-----TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCC-----CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 9999999999999999998777777654 45679999999999996554 45 4689999999999999998877
Q ss_pred cCC
Q 002289 379 CGS 381 (941)
Q Consensus 379 ~~~ 381 (941)
-..
T Consensus 589 ~~w 591 (635)
T 4g8a_A 589 LQW 591 (635)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 261
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-32 Score=328.88 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=221.2
Q ss_pred CCCCCCCCCCCCCC---CCceEecCC----C------C-CCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCC
Q 002289 53 KLSNWNRGDPCTSN---WTGVLCFNT----T------M-DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI 118 (941)
Q Consensus 53 ~~~~w~~~~~c~~~---w~gv~C~~~----~------~-~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l 118 (941)
.+.+|..+..|++. |.++.|... . . .-...+++.|++.++.+....+..|..+++|+.|+|++|.|
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 56789888888754 555554321 0 0 01235677888888887765555677888888888888888
Q ss_pred CCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhc
Q 002289 119 SGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPEL 198 (941)
Q Consensus 119 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 198 (941)
++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.|++..+..|.++++|++|+|++|++++..|..|
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 87777788888888888888888887777778888888888888888886666667888888888888888887777788
Q ss_pred cCCCccceeeccCCcCCCCCCccCCCC-------------------------------------CCCCEEeccCCcCCCC
Q 002289 199 SRLPSLVHMLLDNNNLTGYLPPELSEL-------------------------------------PKLLILQLDNNNFEGT 241 (941)
Q Consensus 199 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-------------------------------------~~L~~L~Ls~N~l~~~ 241 (941)
+.+++|++|+|++|.+++.....+.++ ++|+.|+|++|.+++
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 246 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-
T ss_pred hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-
Confidence 888888888888888876533322221 235555555555553
Q ss_pred CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccC
Q 002289 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 321 (941)
Q Consensus 242 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (941)
+..+..+++|+.|+|++|.|++.+|. .+..+.+|+.|+|++|.|++ +|..+..+++|+.|+|++|+|+ .
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~ 315 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYH-------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-H 315 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESG-------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-C
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHH-------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-c
Confidence 25567777777777777777765443 12223456888888888875 5666677888888888888887 6
Q ss_pred CCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCcccc
Q 002289 322 IPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQF 378 (941)
Q Consensus 322 ~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~~~ 378 (941)
+|..+..+ ++|+.|+|++|.|+.++. ..++.+..|+|++|||.|+|....+
T Consensus 316 i~~~~~~l-----~~L~~L~L~~N~l~~~~~-~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 316 VERNQPQF-----DRLENLYLDHNSIVTLKL-STHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CGGGHHHH-----TTCSEEECCSSCCCCCCC-CTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred cCcccccC-----CCCCEEECCCCCCCCcCh-hhcCCCCEEEeeCCCCCChhHHHHH
Confidence 77766554 456789999999988862 2578899999999999999865443
No 262
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.8e-32 Score=304.25 Aligned_cols=274 Identities=21% Similarity=0.268 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHhCc-CCCCCCCCCC---CCCCCCCCCCceEecCCCC---CCCcceeeEEEecCCCCCccCCccccC
Q 002289 32 TDPIEVSALRSIKKSLV-DDYSKLSNWN---RGDPCTSNWTGVLCFNTTM---DDGYLHLRELQLLNLNLSGNLSPEIGR 104 (941)
Q Consensus 32 ~~~~d~~aL~~~k~~~~-~~~~~~~~w~---~~~~c~~~w~gv~C~~~~~---~~~~~~l~~L~L~~~~l~~~~~~~l~~ 104 (941)
...+|..||++||.++. ++.....+|. .....+|.|.|+.|..... .....+|+.|+|++|+++ .+|+.+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 34568999999999995 4444567884 2333345799999953100 011246899999999998 77888888
Q ss_pred CCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCccccc--------
Q 002289 105 LSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFAN-------- 176 (941)
Q Consensus 105 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------- 176 (941)
+++|++|+|++|.|+ .+|..|+++++|++|+|++|+++ .+|..|+++++|++|+|++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 999999999999998 88888999999999999999998 78888999999999999998888888887654
Q ss_pred -ccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcE
Q 002289 177 -LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLK 255 (941)
Q Consensus 177 -l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~ 255 (941)
+++|++|+|++|+++ .+|..++.+++|++|+|++|++++ +|..+..+++|++|+|++|.+.+ .+|..|.++++|++
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKR 257 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCE
Confidence 666677777766666 566666666666666666666663 44556666666666666666665 45666666666666
Q ss_pred EEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccC
Q 002289 256 LSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSL 318 (941)
Q Consensus 256 L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 318 (941)
|+|++|++.+.+|.. +..+.+|++|+|++|++.+.+|..++++++|+.+++..|.+
T Consensus 258 L~L~~n~~~~~~p~~-------~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 258 LILKDCSNLLTLPLD-------IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCTT-------GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECCCCCchhhcchh-------hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 666555555444420 11122334445555444444454444444444444444433
No 263
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=6.1e-32 Score=326.23 Aligned_cols=291 Identities=19% Similarity=0.246 Sum_probs=181.7
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
+++.|++++|.+++..+..|..+++|++|+|++|+++ .+|..+.++++|++|+|++|++++..|..+.++++|++|+|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4566666666666555555666666666666666665 455556666666666666666655555555555555555555
Q ss_pred cccccccCCc-ccccccccceEecccccccccC--chhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCC
Q 002289 163 QNYISGSLPK-SFANLNKTRHFHMNNNSISGQI--PPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (941)
Q Consensus 163 ~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 239 (941)
+|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|..|..+++|+.|+|++|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 5555544332 2555555555555555554433 344445555555555555555444445555555555555555554
Q ss_pred CCCcchhccCCCCCcEEEccCCCCcCCCCC-CCCCCcc-------------------cccccCCcCEEEccCCcCCCCcc
Q 002289 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNL-------------------GYLLSLNITTIKLSNNKLTGTIP 299 (941)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l-------------------~~l~~~~L~~L~Ls~N~l~~~~p 299 (941)
+...+..+.++++|+.|++++|.+++.++. +..++++ .+....+|++|+|++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 422222344445555555555544443332 1122111 12234578999999999999999
Q ss_pred hhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCccCCCccc
Q 002289 300 SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTNAEQ 377 (941)
Q Consensus 300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c~c~~~~ 377 (941)
..|.++++|+.|+|++|++++..|..+..+ +.| .|+|++|+|+.++... .++.++.|++++|||.|+|+..+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHL-----KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTC-----CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcc-----ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 999999999999999999998888888654 456 7999999999987654 67889999999999999999766
Q ss_pred ccC
Q 002289 378 FCG 380 (941)
Q Consensus 378 ~~~ 380 (941)
|..
T Consensus 568 ~~~ 570 (606)
T 3t6q_A 568 FLE 570 (606)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 264
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.8e-31 Score=318.95 Aligned_cols=280 Identities=23% Similarity=0.256 Sum_probs=177.5
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|+|++|.+++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46777777777777666667777777777777777777666777777777777777777776 44544 5666666666
Q ss_pred cccccccc-CCcccccccccceEeccccccc-------------------------------------------------
Q 002289 162 DQNYISGS-LPKSFANLNKTRHFHMNNNSIS------------------------------------------------- 191 (941)
Q Consensus 162 s~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~------------------------------------------------- 191 (941)
++|++++. +|..|.++++|++|+|++|+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 66666652 3456666666666666655543
Q ss_pred --------------------------------------------------------------------------------
Q 002289 192 -------------------------------------------------------------------------------- 191 (941)
Q Consensus 192 -------------------------------------------------------------------------------- 191 (941)
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence
Q ss_pred -ccCchhc-----------------------------------------------------cCCCccceeeccCCcCCCC
Q 002289 192 -GQIPPEL-----------------------------------------------------SRLPSLVHMLLDNNNLTGY 217 (941)
Q Consensus 192 -~~~p~~~-----------------------------------------------------~~l~~L~~L~L~~N~l~~~ 217 (941)
|.+|..+ ..+++|++|++++|++++.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 2222221 2334444444444444444
Q ss_pred CCccCCCCCCCCEEeccCCcCCCC-CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCC
Q 002289 218 LPPELSELPKLLILQLDNNNFEGT-TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTG 296 (941)
Q Consensus 218 ~p~~~~~l~~L~~L~Ls~N~l~~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~ 296 (941)
+|..+.++++|++|+|++|++++. .+|..|.++++|++|+|++|++++.+|. ..+....+|++|+|++|+|++
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------RTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS------CCCCCCTTCCEEECCSSCCCG
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh------hhhcCcccCCEEECCCCCCCc
Confidence 444444444555555555544431 1123344455555555555555442221 112223456777777777776
Q ss_pred CcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCC-C-CCCCCcEEEecCCCCccCCC
Q 002289 297 TIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNTN 374 (941)
Q Consensus 297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~-~-~~~~~~~l~l~~Np~~c~c~ 374 (941)
.+|..+. ++|+.|+|++|+|+ .+|..++. .++|+.|+|++|+|+.++.. + .++.++.|+|++|||.|+|+
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH-----LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTS-----SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcC-----CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6655443 57888888888887 67776654 45677999999999999886 4 68889999999999999999
Q ss_pred cccc
Q 002289 375 AEQF 378 (941)
Q Consensus 375 ~~~~ 378 (941)
+.++
T Consensus 515 ~~~~ 518 (562)
T 3a79_B 515 GIRY 518 (562)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8766
No 265
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=314.22 Aligned_cols=281 Identities=21% Similarity=0.262 Sum_probs=195.2
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccC-CCCcccCCcCcccee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTG-SLPEELGYLPKLDRI 159 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L 159 (941)
+.+++.|+|++|.+++..|..|+++++|++|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 345677777777777666667777777777777777776 45544 66777777777777765 356667777777666
Q ss_pred ecccccccc-------------------------cCCccccccc------------------------------------
Q 002289 160 QIDQNYISG-------------------------SLPKSFANLN------------------------------------ 178 (941)
Q Consensus 160 ~Ls~N~l~~-------------------------~~p~~~~~l~------------------------------------ 178 (941)
+|++|.+++ ..|..+..+.
T Consensus 121 ~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred EecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 666666542 2233332211
Q ss_pred -----------------------------------------------ccceEecccccccccCchhc-------------
Q 002289 179 -----------------------------------------------KTRHFHMNNNSISGQIPPEL------------- 198 (941)
Q Consensus 179 -----------------------------------------------~L~~L~L~~N~l~~~~p~~~------------- 198 (941)
+|++|++++|+++|.+|..+
T Consensus 201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 45555666666665555443
Q ss_pred ----------------------------------------cCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcC
Q 002289 199 ----------------------------------------SRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNF 238 (941)
Q Consensus 199 ----------------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 238 (941)
..+++|++|++++|++++.+|..+.++++|++|+|++|++
T Consensus 281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred ccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 4556677777777777766777777777777777777777
Q ss_pred CCC-CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeeccccc
Q 002289 239 EGT-TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNS 317 (941)
Q Consensus 239 ~~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 317 (941)
++. .+|..+..+++|++|+|++|++++.+|. ..+....+|++|+|++|++++.+|..+. ++|+.|+|++|+
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKK------GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG------CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCccccc------chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 641 2345677777777777777777753331 1122235678889999988887777664 689999999999
Q ss_pred CccCCCcccccccccCccccceEEccCCCCCCCCCC-C-CCCCCcEEEecCCCCccCCCcccc
Q 002289 318 LSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNTNAEQF 378 (941)
Q Consensus 318 l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~-~-~~~~~~~l~l~~Np~~c~c~~~~~ 378 (941)
|+ .+|..++. .++|+.|+|++|+|+.++.. + .++.++.|++++|||.|+|++.++
T Consensus 433 l~-~ip~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 433 IK-SIPKQVVK-----LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CC-CCCGGGGG-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cc-ccchhhhc-----CCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 98 78887764 45677999999999999876 4 688899999999999999998776
No 266
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.2e-31 Score=317.45 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=137.0
Q ss_pred CCCCCceEecCCC-----CC-CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecc
Q 002289 64 TSNWTGVLCFNTT-----MD-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (941)
Q Consensus 64 ~~~w~gv~C~~~~-----~~-~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 137 (941)
.|.|.|+ |+... ++ ....+++.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3579888 86431 11 23458999999999999888889999999999999999999888899999999999999
Q ss_pred cCccccCCCCcccCCcCccceeeccccccccc-CCcccccccccceEecccccccccCc-hhccCCCccceeeccCCcCC
Q 002289 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 138 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 215 (941)
++|++++..|..|+++++|++|+|++|.+++. .|..|.++++|++|+|++|++.+.+| ..|.++++|++|++++|+++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999988888899999999999999999874 57789999999999999998544554 67888999999999999998
Q ss_pred CCCCccCCCCC
Q 002289 216 GYLPPELSELP 226 (941)
Q Consensus 216 ~~~p~~~~~l~ 226 (941)
+..|..+..++
T Consensus 162 ~~~~~~l~~l~ 172 (549)
T 2z81_A 162 NYQSQSLKSIR 172 (549)
T ss_dssp EECTTTTTTCS
T ss_pred ccChhhhhccc
Confidence 87777776543
No 267
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=330.09 Aligned_cols=283 Identities=23% Similarity=0.249 Sum_probs=219.1
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 57999999999999988889999999999999999999888999999999999999999999888999999999999999
Q ss_pred ccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCcc--------------------
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPE-------------------- 221 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-------------------- 221 (941)
++|.+++..+..|.++++|++|+|++|++++. + .+++|+.|++++|+++ .+|..
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~ 419 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDIL 419 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTH
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchh
Confidence 99999988888999999999999999999842 2 3677888888888777 34432
Q ss_pred --CCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcc
Q 002289 222 --LSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIP 299 (941)
Q Consensus 222 --~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p 299 (941)
+.++++|+.|+|++|++++......+..+++|+.|+|++|.+++..+. ....-.+..+.+|+.|+|++|+|++..|
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET--ELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS--CCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc--ccchhhhcCcccccEEECCCCcccccCh
Confidence 223444555555555544322222334444555555555554432221 0001112334678999999999999999
Q ss_pred hhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCccccc
Q 002289 300 SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQFC 379 (941)
Q Consensus 300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~~~~ 379 (941)
..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++++... +..+..|++++|||.|+|++..|.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-------~~L~~L~Ls~N~l~~~~~~~-~~~L~~l~l~~Np~~C~c~~~~f~ 569 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP-------ANLEILDISRNQLLAPNPDV-FVSLSVLDITHNKFICECELSTFI 569 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC-------SCCCEEEEEEECCCCCCSCC-CSSCCEEEEEEECCCCSSSCCSHH
T ss_pred hHccchhhhheeECCCCCCCccChhhhh-------ccccEEECCCCcCCCCChhH-hCCcCEEEecCCCcccccccHHHH
Confidence 9999999999999999999965555542 57889999999999986654 457889999999999999987664
Q ss_pred C
Q 002289 380 G 380 (941)
Q Consensus 380 ~ 380 (941)
.
T Consensus 570 ~ 570 (844)
T 3j0a_A 570 N 570 (844)
T ss_dssp H
T ss_pred H
Confidence 3
No 268
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-30 Score=317.96 Aligned_cols=295 Identities=19% Similarity=0.196 Sum_probs=224.0
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCC--CCCccCCc--cccceecccCccccCCCCcccCCcCccc
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGS--IPKEIGNI--KSLELLLLNGNELTGSLPEELGYLPKLD 157 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 157 (941)
.+++.|++++|.+++..+..|..+++|++|+|++|.+.+. .+..|..+ ++|+.|+|++|++++..|..|.++++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 4556666666666665555566666666666666654321 12223322 4667777777777777788888888899
Q ss_pred eeecccccccccCC-cccccccccceEecccccccccCchhccCCCccceeeccCCcCC--CCCCccCCCCCCCCEEecc
Q 002289 158 RIQIDQNYISGSLP-KSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT--GYLPPELSELPKLLILQLD 234 (941)
Q Consensus 158 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls 234 (941)
+|+|++|.+++.+| ..|.++++|++|+|++|++.+..+..|..+++|+.|++++|.++ +.+|..|.++++|+.|+|+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 99999998887665 67888888999999999888888888888889999999998886 5678889999999999999
Q ss_pred CCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCC-CCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeec
Q 002289 235 NNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDL-SRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFI 313 (941)
Q Consensus 235 ~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 313 (941)
+|+|++ ..+..|.++++|++|+|++|++++..+.. ...+...+....+|++|+|++|+|+...+..|.++++|+.|+|
T Consensus 489 ~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 489 NNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 999987 56778899999999999999998653321 0111112334467899999999999666678999999999999
Q ss_pred ccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC---CCCCCcEEEecCCCCccCCCc-ccccCCC
Q 002289 314 ANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF---NIPPNVTVRLRGNPFCLNTNA-EQFCGSH 382 (941)
Q Consensus 314 s~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~---~~~~~~~l~l~~Np~~c~c~~-~~~~~~~ 382 (941)
++|+|++..+..+.. .++|+.|+|++|+|+.++... .++.+..|++++|||.|+|+. .+|-...
T Consensus 568 s~N~l~~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 568 GLNNLNTLPASVFNN-----QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CSSCCCCCCTTTTTT-----CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CCCCCCcCCHhHhCC-----CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 999999544444444 356779999999999997654 468899999999999999996 7776544
No 269
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.2e-30 Score=284.37 Aligned_cols=272 Identities=22% Similarity=0.298 Sum_probs=149.9
Q ss_pred CCCCCCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecc
Q 002289 62 PCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (941)
Q Consensus 62 ~c~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 137 (941)
.|.|.|+.+.|...... ....+++.|+|++|++++..+..|+++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45566777777543221 12235566666666666555455666666666666666666555666666666666666
Q ss_pred cCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccc--cCchhccCCCccceeeccCCcCC
Q 002289 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG--QIPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 138 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
++|+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++.. ..+..|..+++|++|++++|+++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666665 3444333 556666666666665555556666666666666666642 44555566666666666666665
Q ss_pred CCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCC
Q 002289 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT 295 (941)
Q Consensus 216 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~ 295 (941)
. +|..+. ++|++|+|++|++++ ..|..|..+++|++|+|++|++++..+. .+....+|++|+|++|+|+
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNG-------SLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTT-------TGGGSTTCCEEECCSSCCS
T ss_pred c-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChh-------hccCCCCCCEEECCCCcCc
Confidence 3 343332 566666666666655 3455566666666666666666544332 0111234466666666665
Q ss_pred CCcchhhcCCcccceeecccccCccCCCcccccccc-cCccccceEEccCCCCC
Q 002289 296 GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT-LNATETFILDFQNNNLT 348 (941)
Q Consensus 296 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-l~~~~L~~L~Ls~N~l~ 348 (941)
.+|..+..+++|+.|+|++|+|++..+..|..... .....++.|++++|.++
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 55555566666666666666665433333332211 11234455555555554
No 270
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=299.92 Aligned_cols=277 Identities=18% Similarity=0.177 Sum_probs=180.3
Q ss_pred CCCCCCCceEecCC--C---CC-CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccccee
Q 002289 62 PCTSNWTGVLCFNT--T---MD-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (941)
Q Consensus 62 ~c~~~w~gv~C~~~--~---~~-~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 135 (941)
.|.|.|.|+ |+.. . ++ ....++++|++++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 455679887 6432 1 11 223467777777777776555577777777777777777776666777777777777
Q ss_pred cccCccccCCCCcccCCcCccceeecccccccccCC-cccccccccceEecccc-cccccCchhccCCCccceeeccCCc
Q 002289 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLP-KSFANLNKTRHFHMNNN-SISGQIPPELSRLPSLVHMLLDNNN 213 (941)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~ 213 (941)
+|++|++++..+..|.++++|++|+|++|++++..+ ..|.++++|++|++++| .+++..+..|.++++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777777775444457777777777777777774443 46777777777777777 3665556667777777777777777
Q ss_pred CCCCCCccCCCCCCCCEEeccCCcCCCCCcch-hccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCC
Q 002289 214 LTGYLPPELSELPKLLILQLDNNNFEGTTIPA-SYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNN 292 (941)
Q Consensus 214 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N 292 (941)
+++..|..+.++++|++|+|++|+++. +|. .+..+++|+.|+|++|++++..+. .+... .....++.++|++|
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~--~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFS--ELSTG--ETNSLIKKFTFRNV 259 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC----------CCCCCCEEEEESC
T ss_pred cCccCHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCcccccccc--ccccc--cccchhhccccccc
Confidence 777777777777777777777777753 333 344577777777777777754332 11110 01123455555555
Q ss_pred cCCC----CcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecC
Q 002289 293 KLTG----TIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRG 366 (941)
Q Consensus 293 ~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~ 366 (941)
.+++ .+|..+..+++|+.|+|++|+|+ .++... .++.+++|+|++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-----------------------------~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-----------------------------SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-----------------------------CCCTTTTTTCTTCCEEECCS
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-----------------------------ccCHHHHhcCCCCCEEEeeC
Confidence 5554 24555555555555555555554 444332 456778899999
Q ss_pred CCCccCCC
Q 002289 367 NPFCLNTN 374 (941)
Q Consensus 367 Np~~c~c~ 374 (941)
|||.|+|+
T Consensus 311 N~~~~~~~ 318 (353)
T 2z80_A 311 NPWDCSCP 318 (353)
T ss_dssp SCBCCCHH
T ss_pred CCccCcCC
Confidence 99999996
No 271
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.5e-31 Score=288.49 Aligned_cols=264 Identities=17% Similarity=0.242 Sum_probs=198.2
Q ss_pred CCCCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 61 ~~c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
+.|.|.|++|.|.... ++ .+|..+ .++|++|+|++|+++...+..|.++++|++|+|++|
T Consensus 3 ~~C~C~~~~l~c~~~~-----------------l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n 62 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKG-----------------LT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN 62 (306)
T ss_dssp TTCEEETTEEECCSSC-----------------CS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCeeCCCEEEcCCCC-----------------cc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC
Confidence 5688889999996542 33 234333 267888888888888555556788888888888888
Q ss_pred cccCC--CCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCc-hhccCCCccceeeccCCcCCCC
Q 002289 141 ELTGS--LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGY 217 (941)
Q Consensus 141 ~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ 217 (941)
+++.. .+..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+ ..+..+++|++|++++|++++.
T Consensus 63 ~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 88732 3566777888888888888888 466678888888888888888886554 5778888888888888888888
Q ss_pred CCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCC
Q 002289 218 LPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTG 296 (941)
Q Consensus 218 ~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~ 296 (941)
.+..+.++++|++|+|++|.+++...|..+..+++|++|+|++|++++..+. +.. ..+|++|+|++|+|++
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------LSSLQVLNMSHNNFFS 213 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTSCCSB
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC--------CCCCCEEECCCCccCc
Confidence 8888888888888888888887544677888888888888888888765443 222 2345777777777777
Q ss_pred CcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCcc
Q 002289 297 TIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAE 376 (941)
Q Consensus 297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~ 376 (941)
..+..|..+++|+.|+|++|++++..|..+..+. +.+..|+|++|||.|+|.+.
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------------~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--------------------------SSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC--------------------------TTCCEEECTTCCEECSGGGH
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhh--------------------------ccCCEEEccCCCeecccChH
Confidence 7777777777788888887777766666553321 25678899999999999876
Q ss_pred ccc
Q 002289 377 QFC 379 (941)
Q Consensus 377 ~~~ 379 (941)
.|-
T Consensus 268 ~~~ 270 (306)
T 2z66_A 268 SFL 270 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 272
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.5e-30 Score=285.80 Aligned_cols=243 Identities=24% Similarity=0.340 Sum_probs=113.2
Q ss_pred CCCCCCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecc
Q 002289 62 PCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (941)
Q Consensus 62 ~c~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 137 (941)
.|.|.|+.+.|....+. ....+++.|++++|++++..+..|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 34455666666433211 11234455555555555444444555555555555555555444445555555555555
Q ss_pred cCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccccccc--ccCchhccCCCccceeeccCCcCC
Q 002289 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS--GQIPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 138 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
++|+++ .+|..+. ++|++|+|++|++++..+..|.++++|+.|++++|+++ +..+..|..+ +|++|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 555554 3333332 44555555555555444444555555555555555553 2334444444 5555555555554
Q ss_pred CCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCC
Q 002289 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT 295 (941)
Q Consensus 216 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~ 295 (941)
+ +|..+. ++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++..+. .+....+|+.|+|++|+|+
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENG-------SLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTT-------GGGGCTTCCEEECCSSCCC
T ss_pred c-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChh-------HhhCCCCCCEEECCCCcCe
Confidence 3 333322 345555555555544 2334445555555555555554443321 0111223344555555544
Q ss_pred CCcchhhcCCcccceeecccccCcc
Q 002289 296 GTIPSNFSGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 296 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (941)
.+|..+..+++|+.|++++|+|++
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred -ecChhhhcCccCCEEECCCCCCCc
Confidence 444444445555555555555543
No 273
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.2e-31 Score=318.31 Aligned_cols=286 Identities=20% Similarity=0.284 Sum_probs=248.8
Q ss_pred CcceeeEEEecCCCCCcc-----------------CCcccc--CCCCCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 80 GYLHLRELQLLNLNLSGN-----------------LSPEIG--RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
...+++.|+|++|.++|. +|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 356899999999999996 999999 9999999999999999999999999999999999999
Q ss_pred c-ccC-CCCcccCCc------CccceeecccccccccCCc--ccccccccceEecccccccccCchhccCCCccceeecc
Q 002289 141 E-LTG-SLPEELGYL------PKLDRIQIDQNYISGSLPK--SFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLD 210 (941)
Q Consensus 141 ~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 210 (941)
+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .|.++++|++|+|++|+++|.+| .|+.+++|++|+|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 9 998 899988887 99999999999999 8888 99999999999999999999999 89999999999999
Q ss_pred CCcCCCCCCccCCCCCC-CCEEeccCCcCCCCCcchhccCCC--CCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEE
Q 002289 211 NNNLTGYLPPELSELPK-LLILQLDNNNFEGTTIPASYSNMS--KLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTI 287 (941)
Q Consensus 211 ~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L 287 (941)
+|+++ .+|..+.++++ |++|+|++|+++ .+|..+..++ +|++|+|++|++++.+|....-.........+|++|
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 99999 88999999999 999999999998 4788887765 999999999999998775211112222344578999
Q ss_pred EccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccc---cCccccceEEccCCCCCCCCCCC---CCCCCcE
Q 002289 288 KLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT---LNATETFILDFQNNNLTNISGSF---NIPPNVT 361 (941)
Q Consensus 288 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---l~~~~L~~L~Ls~N~l~~~~~~~---~~~~~~~ 361 (941)
+|++|+|+...+..+..+++|+.|+|++|+|+ .+|..++.... -+.++|+.|+|++|+|+.++..+ .++.++.
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence 99999999666666778999999999999999 78877654321 01237889999999999998766 6788999
Q ss_pred EEecCCCCcc
Q 002289 362 VRLRGNPFCL 371 (941)
Q Consensus 362 l~l~~Np~~c 371 (941)
|+|++|.+..
T Consensus 518 L~Ls~N~l~~ 527 (636)
T 4eco_A 518 IDLSYNSFSK 527 (636)
T ss_dssp EECCSSCCSS
T ss_pred EECCCCCCCC
Confidence 9999998764
No 274
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.5e-30 Score=298.38 Aligned_cols=254 Identities=21% Similarity=0.302 Sum_probs=175.1
Q ss_pred eeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
...++..+.+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 346777777777 3555443 6788888888888877777888888888888888888877777777788888888888
Q ss_pred ccccccCCcccccccccceEecccccccccCchhccCCCccceeeccC-CcCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN-NNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++ |.+....+..|.++++|++|+|++|+|++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence 877766666677777777777777777755555666677777777766 33333333345566666666666666553
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 322 (941)
+| .+..++ +|+.|+|++|+|++..|..|.++++|+.|+|++|++++..
T Consensus 211 ~~-~~~~l~-------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 211 MP-NLTPLV-------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CC-CCTTCT-------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred cc-cccccc-------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 12 233333 3466666666666666777777777777777777777666
Q ss_pred CcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCccCCCccccc
Q 002289 323 PSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTNAEQFC 379 (941)
Q Consensus 323 p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c~c~~~~~~ 379 (941)
|..+..+ ++|+.|+|++|+|+.++... .++.++.|+|++|||.|||++.++-
T Consensus 259 ~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~ 312 (452)
T 3zyi_A 259 RNAFDGL-----ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLA 312 (452)
T ss_dssp TTTTTTC-----TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHH
T ss_pred HHHhcCC-----CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHH
Confidence 6665443 34557777777777776544 5678899999999999999987653
No 275
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=296.90 Aligned_cols=254 Identities=21% Similarity=0.298 Sum_probs=170.2
Q ss_pred eeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
...++..+.+++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 346778887777 4565553 6778888888888777777778888888888888887766667777777777777777
Q ss_pred ccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCC-cCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++| .+....+..|.++++|++|+|++|+|+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 7777666666777777777777777777655556666677777777663 3333333356666666666666666653
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 322 (941)
+| .+..+++| +.|+|++|+|++..|..|.++++|+.|+|++|+|++..
T Consensus 200 ~~-~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 200 IP-NLTPLIKL-------------------------------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CC-CCTTCSSC-------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cc-ccCCCccc-------------------------------CEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 22 23444444 55555555555555666666666666666666666555
Q ss_pred CcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCccCCCccccc
Q 002289 323 PSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTNAEQFC 379 (941)
Q Consensus 323 p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c~c~~~~~~ 379 (941)
|..|..+ ++|+.|+|++|+|+.++... .++.++.|+|++|||.|||.+.++-
T Consensus 248 ~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~ 301 (440)
T 3zyj_A 248 RNAFDNL-----QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440)
T ss_dssp TTSSTTC-----TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred hhhhcCC-----CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence 5555433 34456666666666665443 5677889999999999999987764
No 276
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=308.47 Aligned_cols=91 Identities=16% Similarity=0.320 Sum_probs=64.0
Q ss_pred CcCEEEccCCcCC-CCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCC
Q 002289 283 NITTIKLSNNKLT-GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPN 359 (941)
Q Consensus 283 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~ 359 (941)
+|++|+|++|.+. +.+|..|..+++|+.|+|++|++++..|..+.. .++|+.|+|++|+|+.++... .++.+
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----LSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-----ccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 4555555555554 345555666666666666666666555555544 346779999999999987653 67889
Q ss_pred cEEEecCCCCccCCCcccc
Q 002289 360 VTVRLRGNPFCLNTNAEQF 378 (941)
Q Consensus 360 ~~l~l~~Np~~c~c~~~~~ 378 (941)
+.|++++|||.|+|+...+
T Consensus 521 ~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CEEECCSSCBCCCTTTTHH
T ss_pred cEEEecCCcccCCCcchHH
Confidence 9999999999999986543
No 277
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.5e-30 Score=318.74 Aligned_cols=283 Identities=18% Similarity=0.257 Sum_probs=245.5
Q ss_pred CcceeeEEEecCCCCCc-----------------cCCcccc--CCCCCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 80 GYLHLRELQLLNLNLSG-----------------NLSPEIG--RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~-----------------~~~~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
.+.+++.|+|++|.++| .+|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 35689999999999999 4899988 9999999999999999999999999999999999999
Q ss_pred c-ccC-CCCcccCCcC-------ccceeecccccccccCCc--ccccccccceEecccccccccCchhccCCCccceeec
Q 002289 141 E-LTG-SLPEELGYLP-------KLDRIQIDQNYISGSLPK--SFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLL 209 (941)
Q Consensus 141 ~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 209 (941)
+ +++ .+|..++.++ +|++|+|++|+++ .+|. .|.++++|+.|+|++|+++ .+| .|+.+++|+.|+|
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 998 8888776665 9999999999999 8888 9999999999999999999 888 8999999999999
Q ss_pred cCCcCCCCCCccCCCCCC-CCEEeccCCcCCCCCcchhccCCCC--CcEEEccCCCCcCCCCCCCCCCcccccccCCcCE
Q 002289 210 DNNNLTGYLPPELSELPK-LLILQLDNNNFEGTTIPASYSNMSK--LLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITT 286 (941)
Q Consensus 210 ~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~ 286 (941)
++|+++ .+|..+.++++ |+.|+|++|+|+ .+|..+..++. |+.|+|++|+|++.+|.+. ..+..+...+|+.
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--CSMDDYKGINAST 677 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--SCTTTCCCCCEEE
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccch--hhhccccCCCcCE
Confidence 999999 88999999999 999999999998 47888887765 9999999999999877543 2333344557899
Q ss_pred EEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccc---cCccccceEEccCCCCCCCCCCC---CCCCCc
Q 002289 287 IKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT---LNATETFILDFQNNNLTNISGSF---NIPPNV 360 (941)
Q Consensus 287 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---l~~~~L~~L~Ls~N~l~~~~~~~---~~~~~~ 360 (941)
|+|++|+|+...+..+..+++|+.|+|++|+|+ .+|..++.... -+.++|+.|+|++|+|+.+|..+ .++.++
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcC
Confidence 999999999544444568999999999999999 88887765331 12237889999999999998766 578899
Q ss_pred EEEecCCCCcc
Q 002289 361 TVRLRGNPFCL 371 (941)
Q Consensus 361 ~l~l~~Np~~c 371 (941)
.|+|++|.+..
T Consensus 757 ~L~Ls~N~L~~ 767 (876)
T 4ecn_A 757 NMDVSYNCFSS 767 (876)
T ss_dssp EEECCSSCCSS
T ss_pred EEEeCCCCCCc
Confidence 99999998764
No 278
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=8.7e-30 Score=307.40 Aligned_cols=181 Identities=20% Similarity=0.137 Sum_probs=155.9
Q ss_pred CCCCCCC--CCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccc
Q 002289 60 GDPCTSN--WTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLE 133 (941)
Q Consensus 60 ~~~c~~~--w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 133 (941)
...|.|. +..|.|...... +...+++.|+|++|.+++..|..|+++++|++|+|++|++.+..|..|+++++|+
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccC
Confidence 3446553 566888764432 2345799999999999998888999999999999999999988899999999999
Q ss_pred eecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCc
Q 002289 134 LLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN 213 (941)
Q Consensus 134 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 213 (941)
+|+|++|++++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|++++.....+..+++|++|++++|+
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred eeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 99999999998899999999999999999999998878889999999999999999997554555569999999999999
Q ss_pred CCCCCCccCCCCCCCC--EEeccCCcCCC
Q 002289 214 LTGYLPPELSELPKLL--ILQLDNNNFEG 240 (941)
Q Consensus 214 l~~~~p~~~~~l~~L~--~L~Ls~N~l~~ 240 (941)
+++..+..|+.+++|+ .|++++|.+++
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccccChhhhhhhcccceeEEecCCCccCc
Confidence 9988788888888888 78888888775
No 279
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1e-29 Score=311.02 Aligned_cols=302 Identities=22% Similarity=0.260 Sum_probs=242.0
Q ss_pred CCCCCCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecc
Q 002289 62 PCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (941)
Q Consensus 62 ~c~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 137 (941)
+|.|.++.|.|....+. +...+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 1 ~C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp ---CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred CceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence 37677778888764332 23468999999999999877778999999999999999999999999999999999999
Q ss_pred cCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCC
Q 002289 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY 217 (941)
Q Consensus 138 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 217 (941)
++|++++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..++++++|++|++++|++++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999966666899999999999999999988889999999999999999999999899999999999999999999987
Q ss_pred CCccCC--CCCCCCEEeccCCcCCCCCcchhccCC---------------------------CCCcEEEccCCCCcCCCC
Q 002289 218 LPPELS--ELPKLLILQLDNNNFEGTTIPASYSNM---------------------------SKLLKLSLRNCSLQGPMP 268 (941)
Q Consensus 218 ~p~~~~--~l~~L~~L~Ls~N~l~~~~~p~~~~~l---------------------------~~L~~L~Ls~N~l~~~~~ 268 (941)
.+..+. .+++|+.|+|++|++++ ..|..|..+ ++|+.|++++|.+++..+
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred CHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 776654 56899999999999987 566666654 456677777777776554
Q ss_pred CCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccC---------------
Q 002289 269 DLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLN--------------- 333 (941)
Q Consensus 269 ~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~--------------- 333 (941)
.. +..+...+|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+..|.
T Consensus 240 ~~-----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 240 TT-----FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp TT-----TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred hH-----hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 31 1112224589999999999988888999999999999999999988887765543321
Q ss_pred -------------ccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCC
Q 002289 334 -------------ATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPF 369 (941)
Q Consensus 334 -------------~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~ 369 (941)
.++|+.|+|++|+++.++... .++.+++|++++|.+
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 245666777777776664432 456667777776653
No 280
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-28 Score=274.22 Aligned_cols=267 Identities=22% Similarity=0.319 Sum_probs=231.4
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
+++.+++++++++ .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6889999999988 4666553 689999999999998888899999999999999999998889999999999999999
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCC--CCCccCCCCCCCCEEeccCCcCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG--YLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
+|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|+++. ..+..+.++++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99999 5565554 799999999999998888889999999999999999964 778889999999999999999985
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCcc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (941)
+|..+. ++|++|+|++|++++..+. .+....+|+.|+|++|+|++..+..|..+++|+.|+|++|+|+
T Consensus 186 --l~~~~~--~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 186 --IPQGLP--PSLTELHLDGNKITKVDAA-------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp --CCSSCC--TTCSEEECTTSCCCEECTG-------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred --CCcccc--ccCCEEECCCCcCCccCHH-------HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 565554 8999999999999976553 1223356799999999999988889999999999999999999
Q ss_pred CCCcccccccccCccccceEEccCCCCCCCCCCCC--------CCCCcEEEecCCCCccC
Q 002289 321 SIPSSIWQSRTLNATETFILDFQNNNLTNISGSFN--------IPPNVTVRLRGNPFCLN 372 (941)
Q Consensus 321 ~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~--------~~~~~~l~l~~Np~~c~ 372 (941)
.+|..+..+ ++|+.|+|++|+|+.++.... .+.+..+++.+||+.+.
T Consensus 254 ~lp~~l~~l-----~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 254 KVPGGLADH-----KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp SCCTTTTTC-----SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred cCChhhccC-----CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 888887654 567799999999999975442 35577999999998764
No 281
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=291.64 Aligned_cols=287 Identities=19% Similarity=0.194 Sum_probs=247.4
Q ss_pred CceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCC
Q 002289 68 TGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP 147 (941)
Q Consensus 68 ~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 147 (941)
.+-.|... .+.++..+++++ .+|..+ .++|+.|+|++|+|++..|..|.++++|++|+|++|.+++..|
T Consensus 5 ~~C~C~~~--------~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 73 (477)
T 2id5_A 5 PRCECSAQ--------DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73 (477)
T ss_dssp TTCEEETT--------TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCeECCC--------CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh
Confidence 46667532 246888888888 466655 3689999999999998889999999999999999999998889
Q ss_pred cccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCC
Q 002289 148 EELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPK 227 (941)
Q Consensus 148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 227 (941)
..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 99999999999999999999877788999999999999999999999999999999999999999999998999999999
Q ss_pred CCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCC-CCCCCccccccc----------------CCcCEEEcc
Q 002289 228 LLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLS----------------LNITTIKLS 290 (941)
Q Consensus 228 L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~----------------~~L~~L~Ls 290 (941)
|+.|+|++|++++ ..+..|.++++|+.|+|++|++++..+. +..++++..+.. .+|++|+|+
T Consensus 154 L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 9999999999997 5667899999999999999999986653 445444443322 278999999
Q ss_pred CCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCC-CC-CCCCCcEEEecCCC
Q 002289 291 NNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG-SF-NIPPNVTVRLRGNP 368 (941)
Q Consensus 291 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~-~~-~~~~~~~l~l~~Np 368 (941)
+|+|++..+..|..+++|+.|+|++|+|++..+..+..+ ++|+.|+|++|+|+.+.. .+ .++.++.|+|++|.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-----LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC-----TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc-----ccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 999997767889999999999999999997777666554 456799999999999854 33 67889999999998
Q ss_pred Ccc
Q 002289 369 FCL 371 (941)
Q Consensus 369 ~~c 371 (941)
+..
T Consensus 308 l~~ 310 (477)
T 2id5_A 308 LTT 310 (477)
T ss_dssp CSC
T ss_pred Cce
Confidence 753
No 282
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=312.09 Aligned_cols=286 Identities=19% Similarity=0.211 Sum_probs=213.7
Q ss_pred CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCC-CCccCCccccceecccCccccCCCCcccCCcCccce
Q 002289 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDR 158 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 158 (941)
...+++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4568999999999999888889999999999999999766666 788999999999999999999888999999999999
Q ss_pred eecccccccccCCcc--cccccccceEecccccccccCc-hhccCCCccceeeccCCcCCCCCCccCCCC--CCCCEEec
Q 002289 159 IQIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPELSEL--PKLLILQL 233 (941)
Q Consensus 159 L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L 233 (941)
|+|++|.+++.+|.. |.++++|++|+|++|++++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|+|
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999999866655 8999999999999999987655 578999999999999999998888777766 67777777
Q ss_pred cCCcCCCCCcchhccCCCC------CcEEEccCCCCcCCCCC-CCC----------------------------------
Q 002289 234 DNNNFEGTTIPASYSNMSK------LLKLSLRNCSLQGPMPD-LSR---------------------------------- 272 (941)
Q Consensus 234 s~N~l~~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~~~-~~~---------------------------------- 272 (941)
++|.+.+ ..|..+..+.+ |+.|+|++|.+++..+. +..
T Consensus 182 ~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 182 AANSLYS-RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp CCSBSCC-CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCcccc-ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 7777766 45555554444 67777776665543332 000
Q ss_pred -------CC-------------cccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCccccccccc
Q 002289 273 -------IP-------------NLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTL 332 (941)
Q Consensus 273 -------l~-------------~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 332 (941)
+. ...+....+|+.|+|++|+|++..|..|.++++|+.|+|++|++++..|..+..+
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--- 337 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL--- 337 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC---
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC---
Confidence 00 0011123456666777777766666667777777777777777765556665543
Q ss_pred CccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCcc
Q 002289 333 NATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCL 371 (941)
Q Consensus 333 ~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c 371 (941)
++|+.|+|++|+|+.++... .++.++.|+|++|.+..
T Consensus 338 --~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 338 --PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp --TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred --CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 34567777777777775443 46777777777777653
No 283
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.5e-30 Score=282.44 Aligned_cols=255 Identities=24% Similarity=0.401 Sum_probs=232.3
Q ss_pred CCCCEEEcccCCCCC--CCCCccCCccccceecccC-ccccCCCCcccCCcCccceeecccccccccCCcccccccccce
Q 002289 106 SYLTILDFMWNKISG--SIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 182 (941)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCC-CCCEEeccCCcCCCCCcchhccCCCCCcEEEccCC
Q 002289 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELP-KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (941)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N 261 (941)
|+|++|++++.+|..|..+++|++|+|++|++++.+|..+..++ +|++|+|++|++++ .+|..+..++ |++|+|++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEECcCC
Confidence 99999999999999999999999999999999999999999998 99999999999998 6899999997 999999999
Q ss_pred CCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEE
Q 002289 262 SLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILD 341 (941)
Q Consensus 262 ~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~ 341 (941)
++++.++.. +....+|+.|+|++|++++.+|. +..+++|++|+|++|+|++.+|..+..+ ++|+.|+
T Consensus 208 ~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~ 274 (313)
T 1ogq_A 208 MLEGDASVL-------FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL-----KFLHSLN 274 (313)
T ss_dssp EEEECCGGG-------CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC-----TTCCEEE
T ss_pred cccCcCCHH-------HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC-----cCCCEEE
Confidence 999876641 22335679999999999987776 8899999999999999999999998765 4567999
Q ss_pred ccCCCCCC-CCCCCCCCCCcEEEecCCCCccCCCc
Q 002289 342 FQNNNLTN-ISGSFNIPPNVTVRLRGNPFCLNTNA 375 (941)
Q Consensus 342 Ls~N~l~~-~~~~~~~~~~~~l~l~~Np~~c~c~~ 375 (941)
|++|+|++ +|....++.+..+++.+||+.|+.++
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred CcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 99999994 56555778889999999999887544
No 284
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=273.43 Aligned_cols=265 Identities=24% Similarity=0.322 Sum_probs=230.5
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
+++.+++++++++ .+|..+. ++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6889999999998 5676663 799999999999998888899999999999999999998889999999999999999
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCC--CCCCccCCCCCCCCEEeccCCcCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT--GYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
+|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99999 5565554 89999999999999777778999999999999999996 4778888888 99999999999986
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
+|..+. ++|++|+|++|++++..+. +.. ..+|++|+|++|+|++..+..|..+++|+.|+|++|+|+
T Consensus 187 --l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 187 --IPKDLP--ETLNELHLDHNKIQAIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp --CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT--------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred --cCcccc--CCCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 565554 7999999999999977653 333 345699999999999999999999999999999999999
Q ss_pred cCCCcccccccccCccccceEEccCCCCCCCCCCCC--------CCCCcEEEecCCCCccC
Q 002289 320 GSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFN--------IPPNVTVRLRGNPFCLN 372 (941)
Q Consensus 320 ~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~--------~~~~~~l~l~~Np~~c~ 372 (941)
.+|..+..+ ++|+.|+|++|+|+.++.... .+.+..|++.+||+.+.
T Consensus 255 -~lp~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 255 -RVPAGLPDL-----KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp -BCCTTGGGC-----TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred -ecChhhhcC-----ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 889887654 456799999999999975441 35578999999999753
No 285
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=297.06 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=108.3
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|+|++|.+++..+..|.++++|++|+|++|+|++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57999999999999888789999999999999999999888999999999999999999999 67766 8999999999
Q ss_pred ccccccc-cCCcccccccccceEecccccccccCchhccCCCcc--ceeeccCCcC
Q 002289 162 DQNYISG-SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSL--VHMLLDNNNL 214 (941)
Q Consensus 162 s~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l 214 (941)
++|.+++ .+|..|+++++|++|+|++|++++ ..+..+++| ++|++++|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9999997 478999999999999999998864 223333344 4444444444
No 286
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.2e-29 Score=292.84 Aligned_cols=256 Identities=17% Similarity=0.199 Sum_probs=172.1
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCc--cCCccccceecccCccccCCCCcc-cCCcCccce
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKE--IGNIKSLELLLLNGNELTGSLPEE-LGYLPKLDR 158 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 158 (941)
.++++|+|++|.+++..|..|+++++|++|+|++|++++.+|.. |.++++|++|+|++|++++..|.. |.++++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 34555555555555444445555555555555555555433322 455555555555555555444443 455555555
Q ss_pred eecccccccccCCcccccc----------------------------------cccceEecccccccccCchhccC----
Q 002289 159 IQIDQNYISGSLPKSFANL----------------------------------NKTRHFHMNNNSISGQIPPELSR---- 200 (941)
Q Consensus 159 L~Ls~N~l~~~~p~~~~~l----------------------------------~~L~~L~L~~N~l~~~~p~~~~~---- 200 (941)
|+|++|.+++..+..+..+ ++|++|+|++|++++.+|..+..
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 5555555554444443332 34555555555444433332211
Q ss_pred -----------------------------------CCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcch
Q 002289 201 -----------------------------------LPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPA 245 (941)
Q Consensus 201 -----------------------------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~ 245 (941)
.++|++|++++|++++..|..|..+++|++|+|++|++++ ..|.
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 317 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDN 317 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChh
Confidence 1467777777778887788899999999999999999997 6788
Q ss_pred hccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcc
Q 002289 246 SYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 325 (941)
Q Consensus 246 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 325 (941)
.|.++++|++|+|++|+|++.++. .+....+|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSR-------MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGG-------GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred HhcCcccCCEEECCCCccCCcChh-------HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 999999999999999999876553 1223456799999999999999999999999999999999999655555
Q ss_pred cccccccCccccceEEccCCCCCCC
Q 002289 326 IWQSRTLNATETFILDFQNNNLTNI 350 (941)
Q Consensus 326 ~~~l~~l~~~~L~~L~Ls~N~l~~~ 350 (941)
+..+ ++|+.|+|++|.++.-
T Consensus 391 ~~~l-----~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 391 FDRL-----TSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTTC-----TTCCEEECCSSCBCCC
T ss_pred hccC-----CcccEEEccCCCcccC
Confidence 5443 5677999999999864
No 287
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=282.07 Aligned_cols=248 Identities=23% Similarity=0.269 Sum_probs=216.1
Q ss_pred CCCCC--CCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccccee
Q 002289 62 PCTSN--WTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (941)
Q Consensus 62 ~c~~~--w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 135 (941)
.|.|. |..|.|....+. ....+++.|+|++|++++..+..|.++++|++|+|++|+|++..+..|.++++|++|
T Consensus 38 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 38 VCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp SSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 46554 678999775432 234679999999999999888999999999999999999998888999999999999
Q ss_pred cccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccc-cccccCchhccCCCccceeeccCCcC
Q 002289 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN-SISGQIPPELSRLPSLVHMLLDNNNL 214 (941)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l 214 (941)
+|++|++++..+..|..+++|++|+|++|.|++..+..|.++++|++|+|++| .+....+..|.++++|++|+|++|++
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 99999999777778999999999999999999888889999999999999995 45544455799999999999999999
Q ss_pred CCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcC
Q 002289 215 TGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKL 294 (941)
Q Consensus 215 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l 294 (941)
+ .+| .+..+++|+.|+|++|+|++ ..|..|.++++|+.|+|++|+|++..+. .+....+|+.|+|++|+|
T Consensus 198 ~-~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 198 R-EIP-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERN-------AFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp S-SCC-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTT-------SSTTCTTCCEEECTTSCC
T ss_pred c-ccc-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChh-------hhcCCCCCCEEECCCCCC
Confidence 9 455 58999999999999999997 6788999999999999999999876654 122335679999999999
Q ss_pred CCCcchhhcCCcccceeecccccCc
Q 002289 295 TGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 295 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
++..+..|..+++|+.|+|++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 9888888999999999999999886
No 288
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3e-28 Score=282.97 Aligned_cols=249 Identities=21% Similarity=0.244 Sum_probs=216.4
Q ss_pred CCCCCC--CCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccce
Q 002289 61 DPCTSN--WTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (941)
Q Consensus 61 ~~c~~~--w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 134 (941)
..|.|. |..|.|....+. +...+++.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|++
T Consensus 48 ~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 48 SVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp TTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 456554 578999775432 23457999999999999988999999999999999999999888899999999999
Q ss_pred ecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccc-ccccccCchhccCCCccceeeccCCc
Q 002289 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN-NSISGQIPPELSRLPSLVHMLLDNNN 213 (941)
Q Consensus 135 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~ 213 (941)
|+|++|++++..+..|.++++|++|+|++|.|++..+..|.++++|+.|+|++ |.+....+..|.++++|++|+|++|+
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 99999999987788899999999999999999988888999999999999999 45554445579999999999999999
Q ss_pred CCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCc
Q 002289 214 LTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNK 293 (941)
Q Consensus 214 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~ 293 (941)
+++. | .+..+++|+.|+|++|+|++ ..|..|.++++|+.|+|++|+|++..+.. +....+|+.|+|++|+
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNA-------FDGLASLVELNLAHNN 277 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSSC
T ss_pred cccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHH-------hcCCCCCCEEECCCCc
Confidence 9954 4 58899999999999999998 67899999999999999999998766541 2223566999999999
Q ss_pred CCCCcchhhcCCcccceeecccccCc
Q 002289 294 LTGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 294 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
|++..+..|..+++|+.|+|++|.+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCccChHHhccccCCCEEEccCCCcC
Confidence 99888888889999999999999876
No 289
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-28 Score=278.45 Aligned_cols=275 Identities=18% Similarity=0.200 Sum_probs=219.8
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+.+++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 46799999999999987777899999999999999999988888899999999999999999955555678999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCC-------------------------------------Cc
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRL-------------------------------------PS 203 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-------------------------------------~~ 203 (941)
|++|.+++..+..|..+++|++|+|++|++++.....+..+ ++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 99999998888889999999999999999886533333222 35
Q ss_pred cceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCC
Q 002289 204 LVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLN 283 (941)
Q Consensus 204 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~ 283 (941)
|+.|++++|++++. ..+..+++|++|+|++|.+++ ..|..|..+++|++|+|++|++++....+.. ..+
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------l~~ 296 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQP--------IPT 296 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCCEEECSSSC--------CTT
T ss_pred ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCcccCcccCC--------CCC
Confidence 66777777777643 578899999999999999998 6789999999999999999999875443322 346
Q ss_pred cCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEE
Q 002289 284 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVR 363 (941)
Q Consensus 284 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 363 (941)
|++|+|++|+++ .+|..+..+++|+.|+|++|+|+. +| +. ..++|+.|+|++|.++.-.....+.......
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~-----~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS-----THHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC-----TTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--ch-----hhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 799999999999 567778999999999999999984 43 22 2457889999999997642111122223334
Q ss_pred ecCCCCccCCCc
Q 002289 364 LRGNPFCLNTNA 375 (941)
Q Consensus 364 l~~Np~~c~c~~ 375 (941)
+.+|+..|.+..
T Consensus 368 ~~~~~~~c~~~~ 379 (390)
T 3o6n_A 368 VDDADQHCKIDY 379 (390)
T ss_dssp BCCCCSCCCTTC
T ss_pred ccccCceecccc
Confidence 567888887643
No 290
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.2e-28 Score=267.21 Aligned_cols=229 Identities=19% Similarity=0.316 Sum_probs=207.9
Q ss_pred CCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceE
Q 002289 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (941)
Q Consensus 104 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 183 (941)
...+++.|+|++|+++ .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4688999999999999 88889999999999999999999 89999999999999999999999 789999999999999
Q ss_pred ecccccccccCchhccC---------CCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCc
Q 002289 184 HMNNNSISGQIPPELSR---------LPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLL 254 (941)
Q Consensus 184 ~L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~ 254 (941)
+|++|++.+.+|..+.. +++|++|+|++|+++ .+|..++++++|++|+|++|++++ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCC
Confidence 99999999999987764 999999999999999 889999999999999999999995 677899999999
Q ss_pred EEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccC
Q 002289 255 KLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLN 333 (941)
Q Consensus 255 ~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 333 (941)
+|+|++|++.+.+|. +.. ..+|++|+|++|.+.+.+|..+.++++|+.|+|++|++.+.+|..+..++.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~-- 302 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGG--------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-- 302 (328)
T ss_dssp EEECTTCTTCCBCCCCTTC--------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT--
T ss_pred EEECcCCcchhhhHHHhcC--------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC--
Confidence 999999999988775 322 356799999999999999999999999999999999999999999987655
Q ss_pred ccccceEEccCCCCCCCC
Q 002289 334 ATETFILDFQNNNLTNIS 351 (941)
Q Consensus 334 ~~~L~~L~Ls~N~l~~~~ 351 (941)
|+.+++..|.+..++
T Consensus 303 ---L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 303 ---NCIILVPPHLQAQLD 317 (328)
T ss_dssp ---TCEEECCGGGSCC--
T ss_pred ---ceEEeCCHHHHHHHh
Confidence 568899888877653
No 291
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.7e-27 Score=282.76 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=114.8
Q ss_pred eeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
.+.++++++++++ +|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999996 777664 8999999999999988889999999999999999999988899999999999999999
Q ss_pred ccccccCCcccccccccceEecccccccc-cCchhccCCCccceeeccCCcCCC
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNLTG 216 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~ 216 (941)
|+|+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999 56665 89999999999999997 356899999999999999998764
No 292
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.2e-28 Score=290.90 Aligned_cols=249 Identities=20% Similarity=0.245 Sum_probs=213.4
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+.+|+.|+|++|.+++..+..|+.+++|+.|+|++|.|++..|..|+++++|++|+|++|.+++..+..|+++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46899999999999988888999999999999999999998888999999999999999999976667789999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCC-------------------------------------Cc
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRL-------------------------------------PS 203 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-------------------------------------~~ 203 (941)
|++|.+++..|..|.++++|++|+|++|++++.....+..+ ++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 99999999999999999999999999999986544333322 24
Q ss_pred cceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCC
Q 002289 204 LVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLN 283 (941)
Q Consensus 204 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~ 283 (941)
|+.|+|++|.+++ +..+..+++|+.|+|++|.|++ ..|..|..+++|+.|+|++|+|++.+..+.. +.+
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--------l~~ 302 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQP--------IPT 302 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECTTSCCCEEECSSSC--------CTT
T ss_pred CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-CCHHHhcCccCCCEEECCCCCCCCCCccccc--------CCC
Confidence 6666777777765 3678999999999999999998 6889999999999999999999986544322 346
Q ss_pred cCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCC
Q 002289 284 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN 349 (941)
Q Consensus 284 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~ 349 (941)
|+.|+|++|.|+ .+|..+..+++|+.|+|++|+|++. | +. ..+.|+.|+|++|.++.
T Consensus 303 L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~-----~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS-----THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC-----TTCCCSEEECCSSCEEH
T ss_pred CcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh-----hcCCCCEEEeeCCCCCC
Confidence 799999999999 6788899999999999999999854 3 22 23577899999999875
No 293
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=259.78 Aligned_cols=232 Identities=19% Similarity=0.266 Sum_probs=151.7
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 164 (941)
+.++.++++++. +|..+ .++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567788877774 44433 467888888888887666677777788888888888777666777777777777777777
Q ss_pred c-ccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCc
Q 002289 165 Y-ISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (941)
Q Consensus 165 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 243 (941)
. ++...|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++ ..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC
Confidence 6 665556667777777777777777766656666666666666666666665555556666666666666666654 22
Q ss_pred chhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCC
Q 002289 244 PASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIP 323 (941)
Q Consensus 244 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (941)
+..|..+++|+ +|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 170 ~~~~~~l~~L~-------------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 170 ERAFRGLHSLD-------------------------------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTTTTTCTTCC-------------------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred HHHhcCccccC-------------------------------EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 33344444444 44444444444555666666666666666666664333
Q ss_pred cccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCcccc
Q 002289 324 SSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQF 378 (941)
Q Consensus 324 ~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~~~ 378 (941)
..+. .++.++.|+|++|||.|+|...++
T Consensus 219 ~~~~---------------------------~l~~L~~L~l~~N~~~c~~~~~~~ 246 (285)
T 1ozn_A 219 EALA---------------------------PLRALQYLRLNDNPWVCDCRARPL 246 (285)
T ss_dssp HHHT---------------------------TCTTCCEEECCSSCEECSGGGHHH
T ss_pred HHcc---------------------------cCcccCEEeccCCCccCCCCcHHH
Confidence 3332 234456777788888899887544
No 294
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7e-28 Score=261.96 Aligned_cols=259 Identities=17% Similarity=0.192 Sum_probs=217.7
Q ss_pred CCCCCCCC---ceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccc
Q 002289 61 DPCTSNWT---GVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLE 133 (941)
Q Consensus 61 ~~c~~~w~---gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 133 (941)
+.|.|... .|.|....+. ....++++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|+
T Consensus 4 ~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 4 GACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp TTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 35666443 3778664432 2456899999999999988778899999999999999999988899999999999
Q ss_pred eecccCcc-ccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCC
Q 002289 134 LLLLNGNE-LTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNN 212 (941)
Q Consensus 134 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 212 (941)
+|+|++|. ++...|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 99999998 88777899999999999999999999988999999999999999999999877778999999999999999
Q ss_pred cCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCC
Q 002289 213 NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNN 292 (941)
Q Consensus 213 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N 292 (941)
++++..+..|.++++|+.|+|++|++++ ..|..|..+++|+.|+|++|+|++.++. .+....+|+.|+|++|
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTE-------ALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHH-------HHTTCTTCCEEECCSS
T ss_pred cccccCHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHH-------HcccCcccCEEeccCC
Confidence 9998777789999999999999999997 5788999999999999999999865543 1223355689999999
Q ss_pred cCCCCcchhhcCCcccceeecccccCccCCCccccc
Q 002289 293 KLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 328 (941)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (941)
++....+.. .-+..|+.+..+.|.+....|..+..
T Consensus 236 ~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 987654432 12244666778888888888877643
No 295
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=271.72 Aligned_cols=241 Identities=18% Similarity=0.221 Sum_probs=196.3
Q ss_pred CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCC-cccCCcCccc
Q 002289 79 DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP-EELGYLPKLD 157 (941)
Q Consensus 79 ~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 157 (941)
....+++.|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+ ..|.++++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 345689999999999998888889999999999999999996655669999999999999999995444 4799999999
Q ss_pred eeecccc-cccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCC
Q 002289 158 RIQIDQN-YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNN 236 (941)
Q Consensus 158 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 236 (941)
+|+|++| .+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|+++...+..+..+++|+.|+|++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 9999999 577777889999999999999999999998999999999999999999997544444566899999999999
Q ss_pred cCCCCCcchh---ccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeec
Q 002289 237 NFEGTTIPAS---YSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFI 313 (941)
Q Consensus 237 ~l~~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 313 (941)
++++. .+.. ......++.++|++|.+++.. +..++. .+....+|+.|+|++|+|+...+..|..+++|+.|+|
T Consensus 233 ~l~~~-~~~~l~~~~~~~~l~~l~L~~~~l~~~~--l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 233 DLDTF-HFSELSTGETNSLIKKFTFRNVKITDES--LFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp BCTTC-CCC------CCCCCCEEEEESCBCCHHH--HHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccc-cccccccccccchhhccccccccccCcc--hhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 99873 3332 234677999999999887520 000000 1223456799999999999554455799999999999
Q ss_pred ccccCccCCC
Q 002289 314 ANNSLSGSIP 323 (941)
Q Consensus 314 s~N~l~~~~p 323 (941)
++|++++..|
T Consensus 309 ~~N~~~~~~~ 318 (353)
T 2z80_A 309 HTNPWDCSCP 318 (353)
T ss_dssp CSSCBCCCHH
T ss_pred eCCCccCcCC
Confidence 9999986554
No 296
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.8e-29 Score=274.86 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=158.3
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccc-cCCCCcccC-------CcCccceeecccccccccCCcc
Q 002289 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL-TGSLPEELG-------YLPKLDRIQIDQNYISGSLPKS 173 (941)
Q Consensus 102 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~ 173 (941)
++..++|+.|++++|.+ .+|..+... |+.|+|++|++ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666667777776 555555443 67777777776 334555444 5667777777777777666665
Q ss_pred c--ccccccceEecccccccccCchhccCC-----CccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCC-Ccch
Q 002289 174 F--ANLNKTRHFHMNNNSISGQIPPELSRL-----PSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT-TIPA 245 (941)
Q Consensus 174 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~p~ 245 (941)
+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..+..|+++++|++|+|++|++.+. ..+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6677777777777777655 5555555 6777777777777766666777777777777777776541 0233
Q ss_pred hc--cCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcc-hhhcCCcccceeecccccCccCC
Q 002289 246 SY--SNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIP-SNFSGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 246 ~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~ 322 (941)
.+ ..+++|++|+|++|+|++... +....+....+|++|+|++|+|++.+| ..+..+++|+.|+|++|+|+ .+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSG----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHH----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred HHHhccCCCCCEEECCCCcCcchHH----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 33 666777777777776652110 000011122456777777777776664 44556677777777777777 66
Q ss_pred CcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCc
Q 002289 323 PSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 370 (941)
Q Consensus 323 p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~ 370 (941)
|..+. ++|+.|||++|+|+.+|.-..++.+++|+|++|+|.
T Consensus 269 p~~~~-------~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 269 PKGLP-------AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCC-------SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred hhhcc-------CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 66553 456677777777777755336667777777777764
No 297
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.1e-29 Score=275.40 Aligned_cols=248 Identities=20% Similarity=0.213 Sum_probs=208.4
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCC-CCCCCCccC-------CccccceecccCccccCCCCccc--C
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI-SGSIPKEIG-------NIKSLELLLLNGNELTGSLPEEL--G 151 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--~ 151 (941)
.+++.|++++|.+ .+|..+... |+.|+|++|++ .+.+|..+. ++++|++|+|++|++++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3688899999999 778777655 99999999999 456776665 79999999999999999999886 8
Q ss_pred CcCccceeecccccccccCCcccccc-----cccceEecccccccccCchhccCCCccceeeccCCcCCCC--CCccC--
Q 002289 152 YLPKLDRIQIDQNYISGSLPKSFANL-----NKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY--LPPEL-- 222 (941)
Q Consensus 152 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~-- 222 (941)
.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|+|++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999987 8888888 9999999999999988889999999999999999998875 33444
Q ss_pred CCCCCCCEEeccCCcCCCC--CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcch
Q 002289 223 SELPKLLILQLDNNNFEGT--TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPS 300 (941)
Q Consensus 223 ~~l~~L~~L~Ls~N~l~~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~ 300 (941)
.++++|++|+|++|+|++. .....+.++++|++|+|++|+|++.+|.- .+....+|++|+|++|+|+ .+|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP------SCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS------CCCCCTTCCEEECTTSCCS-SCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh------hhhhcCCCCEEECCCCccC-hhhh
Confidence 8999999999999999841 12245678899999999999999866421 1112356799999999999 7787
Q ss_pred hhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCC
Q 002289 301 NFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 350 (941)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~ 350 (941)
.+. ++|+.|+|++|+|++. |. +.. .++|+.|+|++|.|+..
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~~-----l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PDE-----LPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TTT-----SCEEEEEECTTCTTTCC
T ss_pred hcc--CCceEEECCCCCCCCC-hh-Hhh-----CCCCCEEeccCCCCCCC
Confidence 776 8999999999999965 65 544 45678999999999864
No 298
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=248.86 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=95.3
Q ss_pred CCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccC
Q 002289 65 SNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTG 144 (941)
Q Consensus 65 ~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 144 (941)
|.|.|+.|.... +++.+++++++++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+++.
T Consensus 5 C~~~~~~C~c~~------~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 5 CKKDGGVCSCNN------NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp BGGGTCSBEEET------TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC
T ss_pred CCCCCCCCEeCC------CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe
Confidence 479999985432 35678888887774 555443 567777777777776555667777777777777777765
Q ss_pred CCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCC
Q 002289 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSE 224 (941)
Q Consensus 145 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 224 (941)
..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 44455566666666666666666544445555555555555555555444444444444444444444444333333333
Q ss_pred CCCCCEEeccCCcC
Q 002289 225 LPKLLILQLDNNNF 238 (941)
Q Consensus 225 l~~L~~L~Ls~N~l 238 (941)
+++|+.|+|++|++
T Consensus 156 l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 156 LTSLKELRLYNNQL 169 (270)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CcccceeEecCCcC
Confidence 33433333333333
No 299
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.1e-26 Score=257.58 Aligned_cols=262 Identities=21% Similarity=0.281 Sum_probs=188.7
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
..++++|++++|.+++. ++ +..+++|++|+|++|.++. +| .|.++++|++|+|++|.+++. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 45789999999988864 33 8899999999999999885 44 688899999999999998854 43 88888999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+.+
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 99886654444 38888888888888888875433 7788888888888888875432 7778888888888888875
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCcc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (941)
. . . +..+++|++|++++|++++..+ +. ...+|++|+|++|.+++. ..+..+++|+.|++++|++++
T Consensus 214 ~-~-~-~~~~~~L~~L~l~~n~l~~~~~-~~--------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 214 I-T-P-VANMTRLNSLKIGNNKITDLSP-LA--------NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp C-G-G-GGGCTTCCEEECCSSCCCCCGG-GT--------TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred C-c-h-hhcCCcCCEEEccCCccCCCcc-hh--------cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 2 2 2 7778888888888888775433 22 224557777777777653 456777777777777777764
Q ss_pred CCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCccCCC
Q 002289 321 SIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 374 (941)
Q Consensus 321 ~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c~c~ 374 (941)
. | .+.. .++|+.|+|++|.++.++... .++.++.|++++|++....+
T Consensus 280 ~-~-~~~~-----l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 280 I-S-VLNN-----LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp C-G-GGGG-----CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred C-h-hhcC-----CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 2 2 2222 345667777777776654332 56667777777777665544
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.9e-27 Score=257.99 Aligned_cols=232 Identities=18% Similarity=0.206 Sum_probs=206.7
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCC--CCCCccCCccccceecccCccccCCCCcccCCcCccce
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISG--SIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDR 158 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 158 (941)
..++++|+|++|+++...+..|.++++|++|+|++|+++. ..|..+..+++|++|+|++|.++ .+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 3579999999999996544568999999999999999983 33667788999999999999999 67888999999999
Q ss_pred eecccccccccCC-cccccccccceEecccccccccCchhccCCCccceeeccCCcCCC-CCCccCCCCCCCCEEeccCC
Q 002289 159 IQIDQNYISGSLP-KSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG-YLPPELSELPKLLILQLDNN 236 (941)
Q Consensus 159 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N 236 (941)
|+|++|.+++..+ ..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+++ .+|..+..+++|++|+|++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999997765 689999999999999999999999999999999999999999987 57889999999999999999
Q ss_pred cCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCc-ccceeeccc
Q 002289 237 NFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLP-RLQRLFIAN 315 (941)
Q Consensus 237 ~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~ 315 (941)
++++ ..|..|..+++|++|+|++|++++..+. .+....+|+.|+|++|+|++..|..+..++ +|+.|+|++
T Consensus 186 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 186 QLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTF-------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSG-------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CcCC-cCHHHhcCCCCCCEEECCCCccCccChh-------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 9997 5688999999999999999999875542 223346679999999999999999999995 999999999
Q ss_pred ccCccC
Q 002289 316 NSLSGS 321 (941)
Q Consensus 316 N~l~~~ 321 (941)
|++++.
T Consensus 258 N~~~~~ 263 (306)
T 2z66_A 258 NDFACT 263 (306)
T ss_dssp CCEECS
T ss_pred CCeecc
Confidence 999854
No 301
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.1e-26 Score=276.82 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=155.6
Q ss_pred EEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccc
Q 002289 87 LQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYI 166 (941)
Q Consensus 87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 166 (941)
.++++++++ .+|+.+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 688888888 5676654 8999999999999988899999999999999999999988889999999999999999999
Q ss_pred cccCCcccccccccceEecccccccc-cCchhccCCCccceeeccCCcCCCCCC-ccCCCCCCCCEEeccCCcCCCCCcc
Q 002289 167 SGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFEGTTIP 244 (941)
Q Consensus 167 ~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~p 244 (941)
++..|..|+++++|++|+|++|++++ ..|..|+++++|++|++++|++.+.+| ..|.++++|++|+|++|++++ ..|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cCh
Confidence 98888889999999999999999996 357789999999999999999554554 689999999999999999987 456
Q ss_pred hhcc------------------------CCCCCcEEEccCCCCcCC
Q 002289 245 ASYS------------------------NMSKLLKLSLRNCSLQGP 266 (941)
Q Consensus 245 ~~~~------------------------~l~~L~~L~Ls~N~l~~~ 266 (941)
..+. .+++|++|++++|++++.
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 5554 367888888888888874
No 302
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=8.2e-26 Score=261.96 Aligned_cols=265 Identities=17% Similarity=0.168 Sum_probs=166.0
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|+|++|++++. + ++.+++|++|+|++|+|++. | ++++++|++|+|++|++++ +| ++.+++|++|+|
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4567777777777663 2 66677777777777777653 2 6666777777777777664 33 666666666666
Q ss_pred ccccccccCC--------------------cccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCcc
Q 002289 162 DQNYISGSLP--------------------KSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPE 221 (941)
Q Consensus 162 s~N~l~~~~p--------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 221 (941)
++|++++. + -.+..+++|++|+|++|++++ +| ++.+++|+.|++++|++++. .
T Consensus 135 ~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 135 ARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp TTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---C
T ss_pred CCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---c
Confidence 66666653 2 023444555555555555553 23 44555555555555555543 2
Q ss_pred CCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCccccc--ccCCcCEEEccCCcCCCCcc
Q 002289 222 LSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYL--LSLNITTIKLSNNKLTGTIP 299 (941)
Q Consensus 222 ~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l--~~~~L~~L~Ls~N~l~~~~p 299 (941)
++.+++|+.|+|++|+|++ +| +..+++|++|++++|+|++.++ ..++++..+ ...+|+.|++++|.+.+.+|
T Consensus 208 l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 5556666666666666664 33 5566666666666666665432 222332221 12346666777777666666
Q ss_pred hhhcCCcccceeecccccCccCCCcccccccccC---ccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCcc
Q 002289 300 SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLN---ATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 371 (941)
Q Consensus 300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~---~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c 371 (941)
++.+++|+.|++++|++.+.+|.....+..+. .++|+.|+|++|+|+.++ -..++.++.|++++|.+.-
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCB
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCC
Confidence 45678888888888888777776555454443 357899999999999984 2367889999999998763
No 303
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=4.3e-28 Score=287.66 Aligned_cols=185 Identities=18% Similarity=0.107 Sum_probs=129.5
Q ss_pred eeeccCcEEEEEEE-eCCCcEEEEEEeccCCc----------hhhHhHHHHHHHHHhc-CCCceeeeeeccccCCcEEEE
Q 002289 616 QIGQGGYGKVYKGI-LPDGTVVAVKRAQEGSL----------QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 616 ~lG~G~fg~Vy~~~-~~~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~LV 683 (941)
..+.|++|.+..++ ...|+.||||++..... ...++|.+|+++|+++ .|+||+++++++.+++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 35566666666554 23588999999875321 1235689999999999 799999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||++|++|.+++.+.+ +++.. +|+.||+.||+|+|++| ||||||||+|||+++++++||+|||+|+.....
T Consensus 321 MEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp EECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred EecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999997654 35543 48899999999999999 999999999999999999999999999865432
Q ss_pred CCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQP 816 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~P 816 (941)
. .......||++|||||++.+. +..++|+||+|++++++.++..+
T Consensus 393 ~-------~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 C-------SWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp --------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred C-------ccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 1 223456799999999999764 56789999999998887665443
No 304
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=8.9e-28 Score=280.94 Aligned_cols=242 Identities=22% Similarity=0.213 Sum_probs=171.9
Q ss_pred CCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEec
Q 002289 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 185 (941)
++|+.|+|++|.|++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|++|+|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 378888888888887777788888888888888888886655 8888888888888888875432 378888888
Q ss_pred ccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhcc-CCCCCcEEEccCCCCc
Q 002289 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYS-NMSKLLKLSLRNCSLQ 264 (941)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~-~l~~L~~L~Ls~N~l~ 264 (941)
++|+|++..+. .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.|++ ..|..+. .+++|+.|+|++|.|+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCccc
Confidence 88888865543 35778888888888888777788888888888888888887 4566664 7888888888888887
Q ss_pred CCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccC
Q 002289 265 GPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQN 344 (941)
Q Consensus 265 ~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~ 344 (941)
+.++.. .+.+|+.|+|++|.|++..| .|..+++|+.|+|++|+|++ +|..+..+ ++|+.|+|++
T Consensus 183 ~~~~~~---------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l-----~~L~~L~l~~ 246 (487)
T 3oja_A 183 DVKGQV---------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFS-----QNLEHFDLRG 246 (487)
T ss_dssp EEECCC---------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCC-----TTCCEEECTT
T ss_pred cccccc---------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccC-----CCCCEEEcCC
Confidence 653211 23456888888888886444 47778888888888888874 56655433 3445666666
Q ss_pred CCCC--CCCCCC-CCCCCcEEEec-------CCCCccCCC
Q 002289 345 NNLT--NISGSF-NIPPNVTVRLR-------GNPFCLNTN 374 (941)
Q Consensus 345 N~l~--~~~~~~-~~~~~~~l~l~-------~Np~~c~c~ 374 (941)
|.++ .++..+ .++.+..+++. +|++.|.|.
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 6665 222211 23334444444 666666653
No 305
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8.1e-26 Score=244.42 Aligned_cols=207 Identities=18% Similarity=0.211 Sum_probs=111.4
Q ss_pred ccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeecc
Q 002289 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLD 210 (941)
Q Consensus 131 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 210 (941)
+|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444444444444444444444444445555555555555554444555555566666666
Q ss_pred CCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEcc
Q 002289 211 NNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLS 290 (941)
Q Consensus 211 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls 290 (941)
+|++++..+..+.++++|++|+|++|++++..+|..|.++++|++|+|++|++++..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~----------------------- 165 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------------------- 165 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-----------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-----------------------
Confidence 666655544456666666666666666665335666666666666666655555322
Q ss_pred CCcCCCCcchhhcCCcccc----eeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEe
Q 002289 291 NNKLTGTIPSNFSGLPRLQ----RLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRL 364 (941)
Q Consensus 291 ~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l 364 (941)
+..|..+++|+ .|++++|++++..+..+. ..+|+.|+|++|+|+.++... .++.++.|+|
T Consensus 166 --------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 166 --------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp --------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred --------HHHhhhhhhccccceeeecCCCcccccCccccC------CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 22222222222 444555555432222221 113556666666666665443 4677889999
Q ss_pred cCCCCccCCC
Q 002289 365 RGNPFCLNTN 374 (941)
Q Consensus 365 ~~Np~~c~c~ 374 (941)
++|||.|+|+
T Consensus 232 ~~N~~~c~c~ 241 (276)
T 2z62_A 232 HTNPWDCSCP 241 (276)
T ss_dssp CSSCBCCCTT
T ss_pred cCCcccccCC
Confidence 9999999996
No 306
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.4e-25 Score=261.44 Aligned_cols=260 Identities=25% Similarity=0.358 Sum_probs=176.3
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
..+++.|+|++|.+++..+ +.++++|++|+|++|.+.+..+ +.++++|++|+|++|++++. +. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 4578889999888886543 8888888888888888886554 88888888888888888854 33 78888888888
Q ss_pred cccccccccCC-------------------cccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCcc
Q 002289 161 IDQNYISGSLP-------------------KSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPE 221 (941)
Q Consensus 161 Ls~N~l~~~~p-------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 221 (941)
|++|.+++... ..+.++++|+.|++++|++++. ..+..+++|++|++++|++++..|
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 88888775321 1256677888888888888743 347778888888888888886544
Q ss_pred CCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchh
Q 002289 222 LSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSN 301 (941)
Q Consensus 222 ~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~ 301 (941)
++.+++|+.|+|++|++++ + ..+..+++|+.|++++|++++..+ +.. ..+|+.|+|++|.+++..+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~--------l~~L~~L~l~~n~l~~~~~-- 282 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLAP-LSG--------LTKLTELKLGANQISNISP-- 282 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GTT--------CTTCSEEECCSSCCCCCGG--
T ss_pred ccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCccccchh-hhc--------CCCCCEEECCCCccCcccc--
Confidence 6677888888888888775 2 357777888888888887775543 222 2344666666666664433
Q ss_pred hcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCcc
Q 002289 302 FSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 371 (941)
Q Consensus 302 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c 371 (941)
+..+++|+.|++++|++++..| +.. .++|+.|+|++|+++.++....++.++.|++++|++..
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISN-----LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGG-----CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcC-----CCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCC
Confidence 5566666666666666654322 221 23455566666666555443345555556666555544
No 307
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.5e-25 Score=250.62 Aligned_cols=255 Identities=23% Similarity=0.360 Sum_probs=126.8
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
+++.|++.++.+... + .+..+++|++|+|++|++++..+ +..+++|++|+|++|.++. ++ .|.++++|++|+|+
T Consensus 45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECc
Confidence 455555555555432 2 35555555555555555553222 5555555555555555553 22 35555555555555
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
+|.+++..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-- 191 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC--
T ss_pred CCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc--
Confidence 555553322 55555555555555544433322 5555555555555555553322 4555555555555555553
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 322 (941)
++. +..+++|+.|++++|.+++..+ +....+|++|+|++|++++..+ +..+++|+.|++++|++++ +
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~---------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~ 258 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP---------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I 258 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG---------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C
T ss_pred ccc-ccCCCccceeecccCCCCCCch---------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C
Confidence 222 5555555555555555543222 1122344555555555554333 5555555555555555553 1
Q ss_pred CcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCC
Q 002289 323 PSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPF 369 (941)
Q Consensus 323 p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~ 369 (941)
..+. ..++|+.|++++|+++.++.-..++.++.|++++|++
T Consensus 259 -~~~~-----~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 259 -NAVK-----DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp -GGGT-----TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred -hhHh-----cCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC
Confidence 1121 1234455555555555553323445555555555554
No 308
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.2e-26 Score=276.16 Aligned_cols=282 Identities=20% Similarity=0.219 Sum_probs=249.3
Q ss_pred CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCcccee
Q 002289 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 159 (941)
...+++.|+++++.+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|++|+|++|+..+.+ .+..+++|++|
T Consensus 283 ~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp GGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred cCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 34679999999999964 55 899999999999999999 5888 56 9999999999999766444 67899999999
Q ss_pred eccccccccc--CCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCC-ccCCCCCCCCEEeccCC
Q 002289 160 QIDQNYISGS--LPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNN 236 (941)
Q Consensus 160 ~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N 236 (941)
+|++|.+++. +|..+..+++|++|+|++|.+++ +|..|..+++|++|++++|++.+..+ ..+.++++|++|+|++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 9999999977 48899999999999999999995 66889999999999999999998887 68999999999999999
Q ss_pred cCCCCCcchhccCCCCCcEEEccCCCCcCC-CCC-CCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecc
Q 002289 237 NFEGTTIPASYSNMSKLLKLSLRNCSLQGP-MPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIA 314 (941)
Q Consensus 237 ~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 314 (941)
++.+ ..|..+.++++|++|++++|++++. +|. +.. ..+|++|+|++|++++..|..|.++++|+.|+|+
T Consensus 435 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 435 NTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCc-cchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------CCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 9998 6889999999999999999999873 443 333 3566999999999999999999999999999999
Q ss_pred cccCccCCCcccccccccCccccceEEccCCCCCCCCCCC-CCC-CCcEEEecCCCCccCCCcccccCCCC
Q 002289 315 NNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NIP-PNVTVRLRGNPFCLNTNAEQFCGSHS 383 (941)
Q Consensus 315 ~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~-~~~-~~~~l~l~~Np~~c~c~~~~~~~~~~ 383 (941)
+|++++.+|..+..+ ++|+.|||++|+|+.+|..+ .++ .++.|++++|||.|+|++.+|.....
T Consensus 506 ~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQL-----YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp SSCCSCEEGGGTTTC-----TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCcCCCcCHHHccCC-----CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 999998888888765 45679999999999998876 566 49999999999999999988776553
No 309
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.4e-25 Score=259.98 Aligned_cols=256 Identities=20% Similarity=0.175 Sum_probs=206.5
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
..+++.|++++|++++. | .++.+++|++|+|++|+|++. | ++.+++|++|+|++|++++. + ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 34699999999999975 4 799999999999999999974 4 89999999999999999974 4 89999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|++|++++. | +..+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+..+++|+.|+|++|++++
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999999974 4 89999999999999999974 3 889999999999999766666 58899999999999999997
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCcc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (941)
+| +..+++|+.|++++|++++. .+. ...+|+.|+|++|+|++ +| ++.+++|+.|++++|++++
T Consensus 185 --l~--l~~l~~L~~L~l~~N~l~~~--~l~--------~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 --LD--VSQNKLLNRLNCDTNNITKL--DLN--------QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp --CC--CTTCTTCCEEECCSSCCSCC--CCT--------TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred --ec--cccCCCCCEEECcCCcCCee--ccc--------cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 44 88999999999999999865 122 33567999999999998 56 8899999999999999997
Q ss_pred CCCcccccccccC--ccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCC
Q 002289 321 SIPSSIWQSRTLN--ATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPF 369 (941)
Q Consensus 321 ~~p~~~~~l~~l~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~ 369 (941)
..+..+..+..|. ..+|+.|++++|.+..--+...++.++.|++++|+.
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 6554444333221 123444444444432211112456777888888863
No 310
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.3e-26 Score=245.87 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=179.4
Q ss_pred CCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccc
Q 002289 98 LSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANL 177 (941)
Q Consensus 98 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 177 (941)
+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 444443 578899999999987777788889999999999999987777788899999999999999988888889999
Q ss_pred cccceEecccccccccCchhccCCCccceeeccCCcCCCC-CCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCc--
Q 002289 178 NKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY-LPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLL-- 254 (941)
Q Consensus 178 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~-- 254 (941)
++|++|++++|++++..+..+..+++|++|++++|++++. +|..|.++++|++|+|++|++++ ..+..|..+.+|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLL 178 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhcccc
Confidence 9999999999999877776788899999999999999864 58889999999999999999987 4566777666666
Q ss_pred --EEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCC
Q 002289 255 --KLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIP 323 (941)
Q Consensus 255 --~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (941)
.|++++|++++..+..... .+|+.|+|++|+|++..+..|..+++|+.|+|++|++++..|
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKE--------IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCS--------CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ceeeecCCCcccccCccccCC--------CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8999999998766643222 257999999999998888888999999999999999986554
No 311
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9.8e-26 Score=245.40 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=117.9
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccc
Q 002289 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR 181 (941)
Q Consensus 102 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 181 (941)
+.++++|++|++++|+++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 455666666666666666 4444432 4566666666666655555566666666666666665533221 4444555
Q ss_pred eEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCC
Q 002289 182 HFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (941)
Q Consensus 182 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N 261 (941)
+|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++ ..+..|..++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~---------- 148 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTP---------- 148 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT----------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhccccc----------
Confidence 5555555554 334444444444444444444444333444444444444444444443 2222233333
Q ss_pred CCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEE
Q 002289 262 SLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILD 341 (941)
Q Consensus 262 ~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~ 341 (941)
+|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..++.
T Consensus 149 ---------------------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~------------- 193 (290)
T 1p9a_G 149 ---------------------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG------------- 193 (290)
T ss_dssp ---------------------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-------------
T ss_pred ---------------------CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc-------------
Confidence 3355555555555445555666777777777777776 55555433
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEecCCCCccCCCccccc
Q 002289 342 FQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQFC 379 (941)
Q Consensus 342 Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~~~~~ 379 (941)
.+.+..++|.+|||.|+|.+.++-
T Consensus 194 --------------~~~L~~l~L~~Np~~C~c~~~~l~ 217 (290)
T 1p9a_G 194 --------------SHLLPFAFLHGNPWLCNCEILYFR 217 (290)
T ss_dssp --------------TCCCSEEECCSCCBCCSGGGHHHH
T ss_pred --------------cccCCeEEeCCCCccCcCccHHHH
Confidence 335668899999999999886654
No 312
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.7e-25 Score=260.71 Aligned_cols=260 Identities=27% Similarity=0.345 Sum_probs=180.2
Q ss_pred CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCC------------
Q 002289 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP------------ 147 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p------------ 147 (941)
...++++|++++|.+++..+ ++++++|++|+|++|.+++..+ +.++++|++|+|++|.+++...
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 45678999999999987544 8899999999999999986533 8888999999999988875311
Q ss_pred -------cccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCc
Q 002289 148 -------EELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (941)
Q Consensus 148 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 220 (941)
..+.++++|++|+|++|.+++. ..+..+++|++|++++|++++..| ++.+++|++|++++|++++. .
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence 1266778888999999998854 347888899999999998886655 66788888888888888753 4
Q ss_pred cCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcch
Q 002289 221 ELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPS 300 (941)
Q Consensus 221 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~ 300 (941)
.+..+++|+.|+|++|.+++ ..+ +..+++|++|++++|++++..+ +.. ..+|+.|+|++|++++..+
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~--------l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP-LAG--------LTALTNLELNENQLEDISP- 304 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG-GTT--------CTTCSEEECCSSCCSCCGG-
T ss_pred hhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc-ccC--------CCccCeEEcCCCcccCchh-
Confidence 57778888888888888876 222 7778888888888888876443 222 2344666666666665443
Q ss_pred hhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCc
Q 002289 301 NFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 370 (941)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~ 370 (941)
+..+++|+.|+|++|++++..| +.. .++|+.|++++|.++.++.-..++.++.|++++|++.
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDISP--VSS-----LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCGG--GGG-----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -hcCCCCCCEEECcCCcCCCchh--hcc-----CccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence 5566666666666666664433 221 2344455555555555543334555555555555543
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.6e-27 Score=259.58 Aligned_cols=222 Identities=22% Similarity=0.216 Sum_probs=165.9
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
++..++++++++...+...+..+++|++|+|++|+|++..|..|.++++|++|+|++|++++..+ |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35556666666665555556677889999999999988777888899999999999999886554 8888999999999
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
+|.+++.. .+++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|+|++|.+++ .
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-V 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-E
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-c
Confidence 99888443 347888999999988865543 35788889999999887777788888889999999988887 3
Q ss_pred cchhc-cCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccC
Q 002289 243 IPASY-SNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 321 (941)
Q Consensus 243 ~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (941)
.+..+ ..+++|++|+|++|+|++..+. . ...+|++|+|++|+|++. |..|..+++|+.|+|++|+|+ .
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~--------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-V--------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-C--------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-E
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-c--------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-c
Confidence 44544 4788888888888888754221 1 134567777777777743 344777777777777777776 4
Q ss_pred CCccc
Q 002289 322 IPSSI 326 (941)
Q Consensus 322 ~p~~~ 326 (941)
+|..+
T Consensus 229 l~~~~ 233 (317)
T 3o53_A 229 IEKAL 233 (317)
T ss_dssp ECTTC
T ss_pred hhhHh
Confidence 55544
No 314
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.6e-26 Score=270.66 Aligned_cols=276 Identities=26% Similarity=0.322 Sum_probs=171.1
Q ss_pred CCCCCCCCCCCCCCCceEecCCCCCC-CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccc
Q 002289 54 LSNWNRGDPCTSNWTGVLCFNTTMDD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSL 132 (941)
Q Consensus 54 ~~~w~~~~~c~~~w~gv~C~~~~~~~-~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 132 (941)
+..|....+|| .|+|..|....... ...+++.|++++++|+ .+|..+. ++|+.|+|++|+|+ .+|. .+++|
T Consensus 12 w~~W~~~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 12 WSAWRRAAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHHHHhcCCcc-hhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 35576555553 67654321100000 0113677777777777 5565554 67777777777777 4554 45677
Q ss_pred ceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCC
Q 002289 133 ELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNN 212 (941)
Q Consensus 133 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 212 (941)
++|+|++|+|+ .+|. .+++|++|+|++|.|++. |. .+++|+.|+|++|+|++ +|.. +++|++|+|++|
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 77777777777 4454 567777777777777743 33 45667777777777763 4432 366777777777
Q ss_pred cCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCccccc---------ccCC
Q 002289 213 NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYL---------LSLN 283 (941)
Q Consensus 213 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l---------~~~~ 283 (941)
++++ +|. .+++|+.|+|++|+|++ +| ..+++|+.|+|++|+|++.++.+..+..+... ...+
T Consensus 152 ~l~~-l~~---~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~ 222 (622)
T 3g06_A 152 QLAS-LPA---LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSG 222 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTT
T ss_pred cCCC-cCC---ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCC
Confidence 7764 332 23455666666666653 33 33455666666666665433222111111000 1256
Q ss_pred cCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC-CCCCCcEE
Q 002289 284 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NIPPNVTV 362 (941)
Q Consensus 284 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~l 362 (941)
|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|. ..++|+.|+|++|+|+.+|..+ .++.+..|
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--------LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--------ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 7888888888885 45 45678888899999888 5665 2356788999999999887666 67888899
Q ss_pred EecCCCCcc
Q 002289 363 RLRGNPFCL 371 (941)
Q Consensus 363 ~l~~Np~~c 371 (941)
+|++|++..
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 999998864
No 315
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=3.5e-25 Score=268.17 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=201.2
Q ss_pred CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCcccee
Q 002289 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 159 (941)
.+.+++.|+|++|+|++..+..|.+|++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 45689999999999998777789999999999999999997777889999999999999999997777789999999999
Q ss_pred eccccccccc-CCcccccccccceEecccccccccCchhcc---------------------------------------
Q 002289 160 QIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQIPPELS--------------------------------------- 199 (941)
Q Consensus 160 ~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--------------------------------------- 199 (941)
+|++|.+++. .|..+..+++|++|+|++|+|++..+..|.
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence 9999999864 578888899999999988877543221110
Q ss_pred --------------------------------------------------------------------------------
Q 002289 200 -------------------------------------------------------------------------------- 199 (941)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (941)
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence
Q ss_pred -------------------------------------------------------CCCccceeeccCCcCC---------
Q 002289 200 -------------------------------------------------------RLPSLVHMLLDNNNLT--------- 215 (941)
Q Consensus 200 -------------------------------------------------------~l~~L~~L~L~~N~l~--------- 215 (941)
.+++|+.|++++|.+.
T Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 314 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp ESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch
Confidence 1223444444444332
Q ss_pred -----------------------------------------------------------------CCCCccCCCCCCCCE
Q 002289 216 -----------------------------------------------------------------GYLPPELSELPKLLI 230 (941)
Q Consensus 216 -----------------------------------------------------------------~~~p~~~~~l~~L~~ 230 (941)
+..+..+..+++|+.
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 222333444556666
Q ss_pred EeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccce
Q 002289 231 LQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQR 310 (941)
Q Consensus 231 L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 310 (941)
|+|++|++.....|..|..+++|++|+|++|+|++.+|.. +..+.+|++|+|++|+|++..|..|.++++|+.
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~-------f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH-------HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 7777766443356778888899999999999998876651 222346799999999999999999999999999
Q ss_pred eecccccCccCCCcccccccccCccccceEEccCCCCCC
Q 002289 311 LFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN 349 (941)
Q Consensus 311 L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~ 349 (941)
|+|++|+|++..|..+..+ .++|+.|+|++|.++-
T Consensus 547 L~Ls~N~l~~~~~~~l~~l----~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHF----PSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EECTTSCCCBCCSSCTTCC----CTTCCEEECTTCCBCC
T ss_pred EECCCCcCCCCCHHHHHhh----hCcCCEEEeeCCCCcc
Confidence 9999999999889888654 2467899999999863
No 316
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.6e-24 Score=247.93 Aligned_cols=161 Identities=29% Similarity=0.313 Sum_probs=76.1
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|++++|.+++ +|+. +++|++|++++|++++ +|.. .++|++|+|++|++++ +| .|+++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456666666666665 4432 2455555555555542 2211 1355555555555553 44 3555555555555
Q ss_pred ccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCC
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 241 (941)
++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++ +|... ++|++|++++|+++.
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~- 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEE- 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSS-
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCc-
Confidence 5555553 33322 245555555555553 33 34455555555555555543 22211 244444444444442
Q ss_pred CcchhccCCCCCcEEEccCCCCcC
Q 002289 242 TIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 242 ~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
+| .+..+++|++|++++|++++
T Consensus 230 -lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 230 -LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSS
T ss_pred -cc-ccCCCCCCCEEECCCCcCCc
Confidence 33 24444444444444444443
No 317
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-26 Score=268.40 Aligned_cols=237 Identities=20% Similarity=0.183 Sum_probs=204.0
Q ss_pred CcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCcccee
Q 002289 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (941)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 159 (941)
...+|+.|+|++|++++..|..|+.+++|++|+|++|.|++..| |+.+++|++|+|++|.|++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999999888899999999999999999997666 9999999999999999995432 3899999
Q ss_pred ecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCC-CCCCCCEEeccCCcC
Q 002289 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS-ELPKLLILQLDNNNF 238 (941)
Q Consensus 160 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l 238 (941)
+|++|.|++..+.. +++|+.|+|++|+|++..|..|+.+++|++|+|++|.+++..|..+. .+++|+.|+|++|.|
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 99999999876654 57899999999999998898999999999999999999998888886 799999999999999
Q ss_pred CCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccC
Q 002289 239 EGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSL 318 (941)
Q Consensus 239 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 318 (941)
++. | .+..+++|+.|+|++|+|++.++.+. .+.+|+.|+|++|.|++ +|..+..+++|+.|++++|.+
T Consensus 182 ~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQ--------SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEE--E-CCCCCTTCCEEECCSSCCCEECGGGG--------GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ccc--c-ccccCCCCCEEECCCCCCCCCCHhHc--------CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 863 3 34469999999999999998776533 33567999999999995 788899999999999999999
Q ss_pred c-cCCCcccccccccCccccceEEcc
Q 002289 319 S-GSIPSSIWQSRTLNATETFILDFQ 343 (941)
Q Consensus 319 ~-~~~p~~~~~l~~l~~~~L~~L~Ls 343 (941)
. +.+|..+..+.. |+.|+++
T Consensus 250 ~c~~~~~~~~~l~~-----L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQR-----VQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHH-----HHHHHHH
T ss_pred cCcchHHHHHhCCC-----CcEEecc
Confidence 8 666666655443 3455554
No 318
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.6e-25 Score=257.60 Aligned_cols=251 Identities=25% Similarity=0.327 Sum_probs=137.4
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccc-------------ceecccCccccCCCCc
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSL-------------ELLLLNGNELTGSLPE 148 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~~p~ 148 (941)
.++++|++++|++ |.+|++|+++++|++|++++|++.|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 3578888888888 7888888888888888888888888888888877764 777777777774 333
Q ss_pred ccCCcCccceeecccccccccCCcccc----------------cc-cccceEecccccccccCchhccCCCccceeeccC
Q 002289 149 ELGYLPKLDRIQIDQNYISGSLPKSFA----------------NL-NKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN 211 (941)
Q Consensus 149 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~----------------~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 211 (941)
. .++|++|+|++|.+++ +|..+. .+ ++|++|+|++|++++ +| .|+++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 2 2556666666666665 443220 01 345555555555553 34 345555555555555
Q ss_pred CcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccC
Q 002289 212 NNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSN 291 (941)
Q Consensus 212 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~ 291 (941)
|++++ +|..+ .+|++|+|++|++++ +| .+.++++|++|++++|++++.+.. ..+|++|++++
T Consensus 163 N~l~~-lp~~~---~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~~l~~~-----------~~~L~~L~l~~ 224 (454)
T 1jl5_A 163 NSLKK-LPDLP---PSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKKLPDL-----------PLSLESIVAGN 224 (454)
T ss_dssp SCCSC-CCCCC---TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSSCCCC-----------CTTCCEEECCS
T ss_pred CcCcc-cCCCc---ccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCCcCCCC-----------cCcccEEECcC
Confidence 55553 33222 355555555555553 23 355555555555555555542110 12578888888
Q ss_pred CcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCCCCCCCcEEEecCCCCcc
Q 002289 292 NKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 371 (941)
Q Consensus 292 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~l~~Np~~c 371 (941)
|+++ .+| .|+.+++|+.|++++|++++ +|..+ .+|+.|++++|+++.++.. .+.++.|++++|.+..
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~--------~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP--------PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC--------TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc--------cccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 8887 566 37788888888888888874 55432 4567777888877776643 3567777777776654
No 319
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=7.7e-25 Score=261.98 Aligned_cols=292 Identities=17% Similarity=0.209 Sum_probs=237.0
Q ss_pred ceEecCCCC---C-CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccC
Q 002289 69 GVLCFNTTM---D-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTG 144 (941)
Q Consensus 69 gv~C~~~~~---~-~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 144 (941)
-+.|..... + ....+++.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp EEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 467765322 2 234579999999999998888899999999999999999998888999999999999999999998
Q ss_pred CCCcccCCcCccceeecccccccccCCcccccccccceEecccccccc-cCchhccCCCccceeeccCCcCCCCCCccCC
Q 002289 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNLTGYLPPELS 223 (941)
Q Consensus 145 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 223 (941)
..|..|.++++|++|+|++|++++..+..|+++++|++|+|++|++++ .+|..|+++++|++|++++|++++..+..++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 888999999999999999999998777789999999999999999987 4799999999999999999999988888898
Q ss_pred CCCCC----CEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCC------------------------CCCCCCC-
Q 002289 224 ELPKL----LILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPM------------------------PDLSRIP- 274 (941)
Q Consensus 224 ~l~~L----~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~l~- 274 (941)
.+++| +.|++++|.+++ ..|..|..+ +|+.|++++|...... ..+..++
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred chhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 88888 899999999997 566777766 8999999998432100 0000000
Q ss_pred -cccccccCCcCEEEccCC-cCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCC
Q 002289 275 -NLGYLLSLNITTIKLSNN-KLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG 352 (941)
Q Consensus 275 -~l~~l~~~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~ 352 (941)
.+..+....++.+++++| .+.+.+|..|..+++|+.|++++|+++ .+|..+..+ +|+.|++++|.++.++.
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~------~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF------GWQHLELVNCKFGQFPT 321 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC------CCSEEEEESCBCSSCCB
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC------CccEEeeccCcccccCc
Confidence 011111224677788887 677888888888889999999999888 677776543 56788888888887766
Q ss_pred CCCCCCCcEEEecCCCCc
Q 002289 353 SFNIPPNVTVRLRGNPFC 370 (941)
Q Consensus 353 ~~~~~~~~~l~l~~Np~~ 370 (941)
..++.++.|++.+|...
T Consensus 322 -~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 322 -LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp -CBCSSCCEEEEESCBSC
T ss_pred -ccccccCEEeCcCCccc
Confidence 36777888888888753
No 320
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-26 Score=251.02 Aligned_cols=236 Identities=20% Similarity=0.194 Sum_probs=201.3
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
..++++|+|++|++++..+..|..+++|++|+|++|++++..+ |..+++|++|+|++|++++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3479999999999998877899999999999999999997655 999999999999999999433 348999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccC-CCCCCCCEEeccCCcCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL-SELPKLLILQLDNNNFE 239 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 239 (941)
+++|++++..+.. +++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|+|+
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999999776654 5789999999999998888889999999999999999998877776 47899999999999998
Q ss_pred CCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCc
Q 002289 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
+ ++ ....+++|++|+|++|+|++.++.+. ...+|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++
T Consensus 183 ~--~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~--------~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 183 D--VK-GQVVFAKLKTLDLSSNKLAFMGPEFQ--------SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E--EE-CCCCCTTCCEEECCSSCCCEECGGGG--------GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred c--cc-cccccccCCEEECCCCcCCcchhhhc--------ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6 33 33459999999999999997665432 3456799999999999 57888999999999999999998
Q ss_pred -cCCCcccccccccCccccceEEcc
Q 002289 320 -GSIPSSIWQSRTLNATETFILDFQ 343 (941)
Q Consensus 320 -~~~p~~~~~l~~l~~~~L~~L~Ls 343 (941)
+.+|..+..+. .|+.|+++
T Consensus 251 ~~~~~~~~~~~~-----~L~~l~l~ 270 (317)
T 3o53_A 251 CGTLRDFFSKNQ-----RVQTVAKQ 270 (317)
T ss_dssp HHHHHHHHHTCH-----HHHHHHHH
T ss_pred CcCHHHHHhccc-----cceEEECC
Confidence 66777766544 34466666
No 321
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-24 Score=234.60 Aligned_cols=227 Identities=19% Similarity=0.212 Sum_probs=181.3
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
.+..+++.++++... ..+..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++ + ..+..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence 344555666666544 24567888899999998887 344 57888899999999999885 3 478888899999999
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
+|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++ .
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-L 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-c
Confidence 999988878888888999999999999987777778888999999999999987777778888999999999999887 5
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 321 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (941)
.+..|..+++|++|+|++|++++.++. +.. ..+|+.|+|++|.+.+. +++|+.|+++.|+++|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR--------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--------CTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhC--------CcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc
Confidence 666788889999999999998876664 222 34568899999988754 45788999999999999
Q ss_pred CCcccccccc
Q 002289 322 IPSSIWQSRT 331 (941)
Q Consensus 322 ~p~~~~~l~~ 331 (941)
+|.+++.+..
T Consensus 238 ip~~~~~~~~ 247 (272)
T 3rfs_A 238 VRNSAGSVAP 247 (272)
T ss_dssp BBCTTSCBCG
T ss_pred ccCcccccCC
Confidence 9998876543
No 322
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=1.5e-25 Score=264.52 Aligned_cols=190 Identities=14% Similarity=0.187 Sum_probs=145.3
Q ss_pred CccceeeccCcEEEEEEEeCCCcEEEEEEeccCCch--------hhHhHHHHHHHHHhcCCCceeeeeeccccCCcEEEE
Q 002289 612 NSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 612 ~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
...+.||+|+||+||+|.. .++.+++|+....... ..+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999954 5788899876542211 124589999999999999999766666677788999
Q ss_pred EecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCC
Q 002289 684 YEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVP 763 (941)
Q Consensus 684 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~ 763 (941)
|||+++++|.+++.. +..++.|+++||+|||+++ |+||||||+|||++. ++||+|||+|+.....
T Consensus 418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 999999999999964 5579999999999999999 999999999999999 9999999999876432
Q ss_pred CCCCccccccccccccCCCccccccccc--CCCCchhHhHHHHHHHHHHHhCCCCC
Q 002289 764 DIEGIVPAHVSTVVKGTPGYLDPEYFLT--HKLTDKSDVYSLGVVFLELLTGMQPI 817 (941)
Q Consensus 764 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDVwSlG~ll~elltG~~Pf 817 (941)
...............||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 1000000001235679999999999987 66788899999999988888877666
No 323
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.1e-24 Score=231.43 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=188.9
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+.+++.|++.++.++.. +.+..+++|++|+|++|.+++ + ..+..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34689999999998843 468999999999999999996 3 3799999999999999999988888899999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998888889999999999999999998888888999999999999999998888889999999999999999998
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCccc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRL 308 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L 308 (941)
..+..|..+++|++|+|++|.+.+..| +|+.|+++.|.++|.+|..++.++..
T Consensus 196 -~~~~~~~~l~~L~~L~l~~N~~~~~~~--------------~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 196 -VPDGVFDRLTSLQYIWLHDNPWDCTCP--------------GIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCBCCCTT--------------TTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred -cCHHHHhCCcCCCEEEccCCCccccCc--------------HHHHHHHHHHhCCCcccCcccccCCC
Confidence 577789999999999999999986554 34777899999999999999877653
No 324
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-23 Score=225.36 Aligned_cols=208 Identities=24% Similarity=0.302 Sum_probs=182.2
Q ss_pred CCCCCCCCCC--CCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCc
Q 002289 56 NWNRGDPCTS--NWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNI 129 (941)
Q Consensus 56 ~w~~~~~c~~--~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 129 (941)
.|. +..|.| .|..|.|....+. ....+++.|+|++|++++..+..|.++++|++|+|++|+|+...+..|.++
T Consensus 6 ~~~-~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKD-GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGG-TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCC-CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 464 345544 5788999765433 233569999999999998777799999999999999999997777778999
Q ss_pred cccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeec
Q 002289 130 KSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLL 209 (941)
Q Consensus 130 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 209 (941)
++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 99999999999999877788999999999999999999988899999999999999999999777777999999999999
Q ss_pred cCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcC
Q 002289 210 DNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 210 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
++|++++..+..|.++++|++|+|++|+|++ ..+..|..+++|+.|+|++|.+..
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence 9999998877789999999999999999997 456678889999999999888763
No 325
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=7.7e-24 Score=225.50 Aligned_cols=191 Identities=18% Similarity=0.258 Sum_probs=164.4
Q ss_pred CCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccc
Q 002289 63 CTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL 142 (941)
Q Consensus 63 c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 142 (941)
|+ .|.|.+|.. ..+++++++++++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|++
T Consensus 4 Cp-~~~gC~C~~--------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 4 CE-TVTGCTCNE--------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp CH-HHHSSEEEG--------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CC-CCCceEcCC--------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 43 699999953 3568999999998 4666554 6899999999999988888999999999999999999
Q ss_pred cCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccC
Q 002289 143 TGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL 222 (941)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 222 (941)
++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 98888889999999999999999998888889999999999999999997777778889999999999999997777788
Q ss_pred CCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCC
Q 002289 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (941)
Q Consensus 223 ~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 266 (941)
..+++|++|+|++|+|++ ..+..|..+++|+.|+|++|++++.
T Consensus 152 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 899999999999999987 5666788888888888888887643
No 326
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.6e-24 Score=238.54 Aligned_cols=227 Identities=16% Similarity=0.145 Sum_probs=172.0
Q ss_pred CCCCEEEcccCCCCCCCCC---ccCCccccceecccCccccCCCCccc--CCcCccceeecccccccccCC----ccccc
Q 002289 106 SYLTILDFMWNKISGSIPK---EIGNIKSLELLLLNGNELTGSLPEEL--GYLPKLDRIQIDQNYISGSLP----KSFAN 176 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 176 (941)
..++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3478888888777521100 12235679999999999998888887 889999999999999987655 34567
Q ss_pred ccccceEecccccccccCchhccCCCccceeeccCCcCCCC--C--CccCCCCCCCCEEeccCCcCCCCCcch----hcc
Q 002289 177 LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY--L--PPELSELPKLLILQLDNNNFEGTTIPA----SYS 248 (941)
Q Consensus 177 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~~p~----~~~ 248 (941)
+++|++|+|++|++++..+..|..+++|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHh
Confidence 88999999999999888888888999999999999998752 2 2334788899999999999873 343 357
Q ss_pred CCCCCcEEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccc
Q 002289 249 NMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 327 (941)
Q Consensus 249 ~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (941)
++++|++|+|++|+|++..|. +..+. ...+|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~-----~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCM-----WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCC-----CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred cCCCCCEEECCCCCCCccchhhHHhcc-----CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence 889999999999999887443 32221 1256799999999999 6677664 7899999999999853 33 22
Q ss_pred cccccCccccceEEccCCCCCC
Q 002289 328 QSRTLNATETFILDFQNNNLTN 349 (941)
Q Consensus 328 ~l~~l~~~~L~~L~Ls~N~l~~ 349 (941)
. .++|+.|+|++|.|+.
T Consensus 292 ~-----l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 E-----LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp S-----CCCCSCEECSSTTTSC
T ss_pred h-----CCCccEEECcCCCCCC
Confidence 2 3567799999999875
No 327
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.1e-23 Score=220.34 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=137.6
Q ss_pred CCCEEEcccCCCCCCCCCccCCccccceecccCcc-ccCCCCcccCCcCccceeeccc-ccccccCCcccccccccceEe
Q 002289 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-LTGSLPEELGYLPKLDRIQIDQ-NYISGSLPKSFANLNKTRHFH 184 (941)
Q Consensus 107 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 184 (941)
+|++|+|++|+|++..+..|.++++|++|+|++|+ +++..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777777777777776 7655556777777777777777 777766667777777788888
Q ss_pred cccccccccCchhccCCCccc---eeeccCC-cCCCCCCccCCCCCCCC-EEeccCCcCCCCCcch-hccCCCCCcEEEc
Q 002289 185 MNNNSISGQIPPELSRLPSLV---HMLLDNN-NLTGYLPPELSELPKLL-ILQLDNNNFEGTTIPA-SYSNMSKLLKLSL 258 (941)
Q Consensus 185 L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~p~-~~~~l~~L~~L~L 258 (941)
|++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ .|+|++|+++. +|. .|.. ++|++|+|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEEC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEc
Confidence 88877775 555 67777776 7888887 77766666677778888 88888887773 333 3444 77888888
Q ss_pred cCCC-CcCCCCCCCCCCccccccc-CCcCEEEccCCcCCCCcchhhcCCcccceeecccc
Q 002289 259 RNCS-LQGPMPDLSRIPNLGYLLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANN 316 (941)
Q Consensus 259 s~N~-l~~~~~~~~~l~~l~~l~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 316 (941)
++|+ +++..+. .+... .+|+.|+|++|+|++..+. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~-------~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKD-------AFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTT-------TTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHH-------HhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 8884 7754443 11222 4567888888888754443 5667788888776
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.4e-23 Score=223.13 Aligned_cols=199 Identities=24% Similarity=0.206 Sum_probs=167.1
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.++++|++.+++++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|.+++..+ . +.+++|++|+|
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEEC
Confidence 36899999999998 4666554 789999999999998888999999999999999999995433 3 78999999999
Q ss_pred ccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCC
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 241 (941)
++|+|+ .+|..+..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE- 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-
Confidence 999998 778899999999999999999998888899999999999999999998888889999999999999999996
Q ss_pred CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCC
Q 002289 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT 295 (941)
Q Consensus 242 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~ 295 (941)
..+..|..+++|++|+|++|+|+..++.+... .+|+.|+|++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~--------~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--------HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhccc--------ccCCeEEeCCCCcc
Confidence 45566788889988888888887444332211 23455555555554
No 329
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.2e-25 Score=261.73 Aligned_cols=287 Identities=16% Similarity=0.128 Sum_probs=213.4
Q ss_pred eeeEEEecCCCCCc----cCCccccCCCCCCEEEcccCCCCCCCCCccC-----CccccceecccCccccCCC----Ccc
Q 002289 83 HLRELQLLNLNLSG----NLSPEIGRLSYLTILDFMWNKISGSIPKEIG-----NIKSLELLLLNGNELTGSL----PEE 149 (941)
Q Consensus 83 ~l~~L~L~~~~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~----p~~ 149 (941)
++++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+. ..++|++|+|++|++++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58899999998884 4677888899999999999988754333332 2567999999999888643 556
Q ss_pred cCCcCccceeecccccccccCCccccc-----ccccceEeccccccccc----CchhccCCCccceeeccCCcCCCCC--
Q 002289 150 LGYLPKLDRIQIDQNYISGSLPKSFAN-----LNKTRHFHMNNNSISGQ----IPPELSRLPSLVHMLLDNNNLTGYL-- 218 (941)
Q Consensus 150 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-- 218 (941)
+..+++|++|+|++|.++...+..+.. +++|++|+|++|++++. ++..+..+++|++|+|++|+++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 677789999999999987655554443 56899999999998864 5677778899999999999887532
Q ss_pred ---CccCCCCCCCCEEeccCCcCCCCC---cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCC
Q 002289 219 ---PPELSELPKLLILQLDNNNFEGTT---IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNN 292 (941)
Q Consensus 219 ---p~~~~~l~~L~~L~Ls~N~l~~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N 292 (941)
+..+..+++|++|+|++|.++... ++..+..+++|++|+|++|.+++..+. .+...-.....+|++|+|++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeEcCCC
Confidence 233446889999999999987521 567788899999999999988642211 011110111247899999999
Q ss_pred cCCCC----cchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCC-----CCCCCC-CCCCCcEE
Q 002289 293 KLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLT-----NISGSF-NIPPNVTV 362 (941)
Q Consensus 293 ~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~-----~~~~~~-~~~~~~~l 362 (941)
.+++. ++..+..+++|+.|+|++|++++..+..+...-.-..++|+.|+|++|.++ .++..+ ..+.++.|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 99976 577788889999999999999876666555432222468899999999998 344444 57889999
Q ss_pred EecCCCCcc
Q 002289 363 RLRGNPFCL 371 (941)
Q Consensus 363 ~l~~Np~~c 371 (941)
+|++|++..
T Consensus 404 ~l~~N~i~~ 412 (461)
T 1z7x_W 404 DLSNNCLGD 412 (461)
T ss_dssp ECCSSSCCH
T ss_pred ECCCCCCCH
Confidence 999998754
No 330
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.8e-23 Score=244.99 Aligned_cols=212 Identities=29% Similarity=0.362 Sum_probs=137.0
Q ss_pred CCCCCC---CCCce-EecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCcccccee
Q 002289 60 GDPCTS---NWTGV-LCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (941)
Q Consensus 60 ~~~c~~---~w~gv-~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 135 (941)
.++|.. .|.|+ .|... +++.|+|++|+|++ +|..+ +++|+.|+|++|+|+ .+| ..+++|++|
T Consensus 40 ~~~~~~~~~~~~~l~~C~~~-------~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECLIN-------QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp CCTTCCHHHHHHHHHHHHHT-------TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred CCccccccchhhhccccccC-------CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 445533 58898 78542 57888888888886 66655 377888888888888 566 446778888
Q ss_pred cccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCC
Q 002289 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
+|++|+|++ +|. +.+ +|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|+
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 888888875 665 554 77777777777775 444 45666666666666664 443 3456666666666665
Q ss_pred CCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCC
Q 002289 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT 295 (941)
Q Consensus 216 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~ 295 (941)
+ +|. |. ++|+.|+|++|+|+. +|. |.. +| +.....|+.|+|++|+|+
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L------------------------~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLES--LPA-VPV--RN------------------------HHSEETEIFFRCRENRIT 220 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCSS--CCC-CC----------------------------------CCEEEECCSSCCC
T ss_pred C-cch-hh--CCCCEEECcCCCCCc--hhh-HHH--hh------------------------hcccccceEEecCCCcce
Confidence 4 444 43 555555555555552 333 221 22 001122377778888777
Q ss_pred CCcchhhcCCcccceeecccccCccCCCcccccccc
Q 002289 296 GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT 331 (941)
Q Consensus 296 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 331 (941)
.+|..+..+++|+.|+|++|+|++.+|..+..+..
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 56777777888888888888888888887776654
No 331
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.5e-23 Score=224.29 Aligned_cols=200 Identities=23% Similarity=0.363 Sum_probs=139.2
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccc
Q 002289 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR 181 (941)
Q Consensus 102 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 181 (941)
+..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|++|+|++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456667777777777663 44 46667777777777777774333 67777777777777777643 2567777777
Q ss_pred eEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCC
Q 002289 182 HFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (941)
Q Consensus 182 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N 261 (941)
+|+|++|++++ ++. +..+++|++|++++|++++..+ +..+++|+.|+|++|++++ ++. +..+++|+.|+|++|
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCC
Confidence 77777777774 332 6777777777777777775433 7777788888888887775 333 777788888888888
Q ss_pred CCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCccc
Q 002289 262 SLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSI 326 (941)
Q Consensus 262 ~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 326 (941)
++++..+ +....+|++|+|++|+|++..+ +..+++|+.|+|++|+++ ..|..+
T Consensus 184 ~l~~~~~---------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~-~~~~~~ 236 (308)
T 1h6u_A 184 KISDISP---------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQPVFY 236 (308)
T ss_dssp CCCCCGG---------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE-CCCEEC
T ss_pred ccCcChh---------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee-cCCeee
Confidence 7775433 2233556888888888886653 888999999999999998 444443
No 332
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.4e-22 Score=213.95 Aligned_cols=180 Identities=22% Similarity=0.285 Sum_probs=112.8
Q ss_pred CCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecc
Q 002289 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (941)
Q Consensus 107 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 186 (941)
..++++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3556777777776 4555443 467777777777776666666777777777777777766666666666666666666
Q ss_pred cccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCC
Q 002289 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (941)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 266 (941)
+|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++ ..+..|..+++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~------------ 158 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQ------------ 158 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCC------------
Confidence 666665555556666666666666666665555555666666666666666654 2333455555554
Q ss_pred CCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccC
Q 002289 267 MPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 321 (941)
Q Consensus 267 ~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (941)
+|+|++|+|++..+..|..+++|+.|+|++|++++.
T Consensus 159 -------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 -------------------TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------------------EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------------------EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 445555555545555666677777777777777644
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.9e-22 Score=213.06 Aligned_cols=178 Identities=22% Similarity=0.279 Sum_probs=91.2
Q ss_pred ccceecccCccccCCCCcccCCcCccceeeccccc-ccccCCcccccccccceEeccc-ccccccCchhccCCCccceee
Q 002289 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY-ISGSLPKSFANLNKTRHFHMNN-NSISGQIPPELSRLPSLVHML 208 (941)
Q Consensus 131 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 208 (941)
+|++|+|++|++++..+..|.++++|++|+|++|+ +++..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 5544444555555555555555 555544444555555555555
Q ss_pred ccCCcCCCCCCccCCCCCCCC---EEeccCC-cCCCCCcchhccCCCCCc-EEEccCCCCcCCCCCCCCCCcccccccCC
Q 002289 209 LDNNNLTGYLPPELSELPKLL---ILQLDNN-NFEGTTIPASYSNMSKLL-KLSLRNCSLQGPMPDLSRIPNLGYLLSLN 283 (941)
Q Consensus 209 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~ 283 (941)
+++|++++ +|. |..+++|+ +|+|++| ++++ ..+..|.++++|+ +|++++|+++..++.. +.. .+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-------~~~-~~ 180 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYA-------FNG-TK 180 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEECTTT-------TTT-CE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCcccCHhh-------cCC-CC
Confidence 55555553 333 55555555 5555555 5543 2333455555555 5555555554222211 111 23
Q ss_pred cCEEEccCCc-CCCCcchhhcCC-cccceeecccccCc
Q 002289 284 ITTIKLSNNK-LTGTIPSNFSGL-PRLQRLFIANNSLS 319 (941)
Q Consensus 284 L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 319 (941)
|+.|+|++|+ |++..+..|.++ ++|+.|++++|+|+
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 4555555553 554445555555 55555555555555
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.4e-24 Score=240.34 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=186.0
Q ss_pred EEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCC----CccCCcc-ccceecccCccccCCCCcccCCc-----Cc
Q 002289 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIK-SLELLLLNGNELTGSLPEELGYL-----PK 155 (941)
Q Consensus 86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 155 (941)
.++++.++++|.+|..+...++|++|+|++|.|++..+ ..|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788889998888777777889999999999987666 6777888 89999999999998877777775 89
Q ss_pred cceeecccccccccCCcccccc-----cccceEecccccccccCchhcc----C-CCccceeeccCCcCCCCCC----cc
Q 002289 156 LDRIQIDQNYISGSLPKSFANL-----NKTRHFHMNNNSISGQIPPELS----R-LPSLVHMLLDNNNLTGYLP----PE 221 (941)
Q Consensus 156 L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~~p----~~ 221 (941)
|++|+|++|.+++..+..+... ++|++|+|++|+|++..+..+. . .++|++|+|++|+++.... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999988777755544 8999999999999877665543 3 3589999999999985433 33
Q ss_pred CCCCC-CCCEEeccCCcCCCCCcch----hccCC-CCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCC
Q 002289 222 LSELP-KLLILQLDNNNFEGTTIPA----SYSNM-SKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT 295 (941)
Q Consensus 222 ~~~l~-~L~~L~Ls~N~l~~~~~p~----~~~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~ 295 (941)
+..++ +|++|+|++|+|++ ..+. .+..+ ++|++|+|++|+|++.... .++..-.....+|++|+|++|+|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYA--ELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--HHHHHHhcCCCCceEEECcCCCCC
Confidence 44555 89999999999886 3443 34445 5899999999988742110 011110011246788888888888
Q ss_pred CCcc----hhhcCCcccceeecccccCccCCCcccccccc--cCccccceEEccCCCCCC
Q 002289 296 GTIP----SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT--LNATETFILDFQNNNLTN 349 (941)
Q Consensus 296 ~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--l~~~~L~~L~Ls~N~l~~ 349 (941)
+..+ ..+..+++|+.|+|++|++.+..+..+..+.. -...+|+.|||++|+|..
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 7655 33456788888888888866443332322211 123456677777777654
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=222.91 Aligned_cols=224 Identities=19% Similarity=0.191 Sum_probs=185.7
Q ss_pred eeeEEEecCCCCCccCCc---cccCCCCCCEEEcccCCCCCCCCCcc--CCccccceecccCccccCCCC----cccCCc
Q 002289 83 HLRELQLLNLNLSGNLSP---EIGRLSYLTILDFMWNKISGSIPKEI--GNIKSLELLLLNGNELTGSLP----EELGYL 153 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 153 (941)
+++.+.+.++.++...-. .+..+++|++|+|++|++.+..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 478889998888643111 22345779999999999999999888 999999999999999998666 445689
Q ss_pred CccceeecccccccccCCcccccccccceEeccccccccc--Cc--hhccCCCccceeeccCCcCCCCCCc----cCCCC
Q 002289 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ--IP--PELSRLPSLVHMLLDNNNLTGYLPP----ELSEL 225 (941)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p--~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l 225 (941)
++|++|+|++|.+++..+..|..+++|++|+|++|++.+. ++ ..+..+++|++|+|++|+++. ++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998753 22 234689999999999999973 333 35788
Q ss_pred CCCCEEeccCCcCCCCCcchhccCC---CCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhh
Q 002289 226 PKLLILQLDNNNFEGTTIPASYSNM---SKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNF 302 (941)
Q Consensus 226 ~~L~~L~Ls~N~l~~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~ 302 (941)
++|++|+|++|+|++ ..|..+..+ ++|++|+|++|+|+..+..+ ..+|++|+|++|+|++. |. +
T Consensus 224 ~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----------~~~L~~L~Ls~N~l~~~-~~-~ 290 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----------PAKLRVLDLSSNRLNRA-PQ-P 290 (310)
T ss_dssp CCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----------CSCCSCEECCSCCCCSC-CC-T
T ss_pred CCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhh----------cCCCCEEECCCCcCCCC-ch-h
Confidence 999999999999997 567777776 69999999999999543322 15789999999999975 33 6
Q ss_pred cCCcccceeecccccCcc
Q 002289 303 SGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 303 ~~l~~L~~L~Ls~N~l~~ 320 (941)
..+++|+.|+|++|+|+.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 889999999999999974
No 336
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.7e-22 Score=208.50 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=130.3
Q ss_pred CCCCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 61 ~~c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
+.|.|.|.+|.|.... ++ .+|..+ .++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 3 ~~C~C~~~~v~c~~~~-----------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQG-----------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp TTCEEETTEEECCSSC-----------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCEECCCEEEecCCC-----------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC
Confidence 5688899999996543 22 223222 346777777777777666666777777777777777
Q ss_pred cccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCc
Q 002289 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (941)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 220 (941)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+.
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 77766566677777777777777777766666677777777777777777766666677777788888888877766666
Q ss_pred cCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCC
Q 002289 221 ELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD 269 (941)
Q Consensus 221 ~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 269 (941)
.|..+++|+.|+|++|.+.+ .+++|++|+++.|+++|.+|.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBC
T ss_pred HhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeec
Confidence 67777788888888877664 245777777888888777664
No 337
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=3.5e-22 Score=223.59 Aligned_cols=246 Identities=19% Similarity=0.176 Sum_probs=158.9
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCC-cccCCcCccce-eecc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP-EELGYLPKLDR-IQID 162 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls 162 (941)
+.++.++++|+ .+|..+ .++|++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35778888888 566655 3678888888888885555678888888888888888765555 46777877664 5566
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccC-CcCCCCCCccCCCCC-CCCEEeccCCcCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN-NNLTGYLPPELSELP-KLLILQLDNNNFEG 240 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 240 (941)
.|+|++..|+.|.++++|++|++++|+|++..+..+....++..|++.+ |++....+..|..+. .|+.|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7778777777777788888888888877765555566666666777654 455544444555543 45566666666653
Q ss_pred CCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccC-CcCCCCcchhhcCCcccceeecccccCc
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSN-NKLTGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
+|.......+| +.|++++ |.++.+.+..|.++++|+.|+|++|+|+
T Consensus 169 --i~~~~f~~~~L-------------------------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 --IHNSAFNGTQL-------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp --ECTTSSTTEEE-------------------------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred --CChhhccccch-------------------------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 33332233334 5555543 4455444456677777777777777777
Q ss_pred cCCCcccccccccCccccceEEc-cCCCCCCCCCCCCCCCCcEEEecCCCCccCCCc
Q 002289 320 GSIPSSIWQSRTLNATETFILDF-QNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNA 375 (941)
Q Consensus 320 ~~~p~~~~~l~~l~~~~L~~L~L-s~N~l~~~~~~~~~~~~~~l~l~~Np~~c~c~~ 375 (941)
.+|... ..+|+.|.+ +.++++.+|.--.++.+..+++. |||.|.|-.
T Consensus 216 -~lp~~~-------~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~-~~~~c~~~~ 263 (350)
T 4ay9_X 216 -SLPSYG-------LENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHCCAFA 263 (350)
T ss_dssp -CCCSSS-------CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS-CHHHHHHHH
T ss_pred -ccChhh-------hccchHhhhccCCCcCcCCCchhCcChhhCcCC-CCccccchh
Confidence 444432 122333433 34566777754467788888885 788886643
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.7e-24 Score=236.68 Aligned_cols=260 Identities=14% Similarity=0.177 Sum_probs=208.2
Q ss_pred CCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCC--CCCCEEEcccCCCCCCCCCccCCccccceecccCcccc
Q 002289 66 NWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRL--SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (941)
Q Consensus 66 ~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 143 (941)
.|.++.|... .++.|+++++++. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.++
T Consensus 38 ~W~~~~~~~~-------~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 38 RWYRLASDES-------LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp HHHHHHTCST-------TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHhcCch-------hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 6999887532 3789999998887 4567777 8999999999999987765 668999999999999998
Q ss_pred CC-CCcccCCcCccceeecccccccccCCcccccccccceEecccc-ccccc-CchhccCCCccceeeccCC-cCCCC-C
Q 002289 144 GS-LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN-SISGQ-IPPELSRLPSLVHMLLDNN-NLTGY-L 218 (941)
Q Consensus 144 ~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~ 218 (941)
+. ++..+..+++|++|+|++|.+++..+..++.+++|++|+|++| .+++. ++..+..+++|++|++++| .+++. +
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 66 8888999999999999999999888999999999999999999 68763 6777889999999999999 99864 5
Q ss_pred CccCCCCC-CCCEEeccCC--cCCCCCcchhccCCCCCcEEEccCCC-CcCCCCCCCCCCcccccccCCcCEEEccCCc-
Q 002289 219 PPELSELP-KLLILQLDNN--NFEGTTIPASYSNMSKLLKLSLRNCS-LQGPMPDLSRIPNLGYLLSLNITTIKLSNNK- 293 (941)
Q Consensus 219 p~~~~~l~-~L~~L~Ls~N--~l~~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~- 293 (941)
+..+..++ +|++|+|++| .++...++..+..+++|++|+|++|. +++..+. . +....+|++|+|++|.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~--l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----E--FFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----G--GGGCTTCCEEECTTCTT
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----H--HhCCCCCCEeeCCCCCC
Confidence 67788899 9999999999 55533577888899999999999999 6543221 1 1223677999999995
Q ss_pred CCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCC
Q 002289 294 LTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS 351 (941)
Q Consensus 294 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~ 351 (941)
+.......+.++++|+.|++++| ++. ..+..+. ..++.|++++|+++++.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~----~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLK----EALPHLQINCSHFTTIA 309 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHH----HHSTTSEESCCCSCCTT
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHH----hhCcceEEecccCcccc
Confidence 33333336888999999999999 432 2233221 23567789999998864
No 339
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=5.1e-21 Score=228.50 Aligned_cols=222 Identities=24% Similarity=0.297 Sum_probs=146.6
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.|+|++|+|+. +|. .+++|++|+|++|+|+ .+|. .+++|++|+|++|++++ +|. .+++|+.|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 467888888887773 444 5677888888888877 4554 56777777777777774 443 4566777777
Q ss_pred ccccccccCCcccccccccceEecccccccccCchhc-----------------cCCCccceeeccCCcCCCCCCccCCC
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPEL-----------------SRLPSLVHMLLDNNNLTGYLPPELSE 224 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----------------~~l~~L~~L~L~~N~l~~~~p~~~~~ 224 (941)
++|+|++ +|.. +++|++|+|++|++++ +|..+ ..+++|+.|+|++|+|++ +|..
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~--- 199 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL--- 199 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---
Confidence 7777764 3432 3666777777776663 33221 122455555555555553 2221
Q ss_pred CCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcC
Q 002289 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSG 304 (941)
Q Consensus 225 l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~ 304 (941)
+++|+.|++++|.|+. +|. .+++|+.|+|++|+|++.+. ...+|+.|+|++|+|+. +|. .
T Consensus 200 ~~~L~~L~L~~N~l~~--l~~---~~~~L~~L~Ls~N~L~~lp~-----------~l~~L~~L~Ls~N~L~~-lp~---~ 259 (622)
T 3g06_A 200 PSELYKLWAYNNRLTS--LPA---LPSGLKELIVSGNRLTSLPV-----------LPSELKELMVSGNRLTS-LPM---L 259 (622)
T ss_dssp CTTCCEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSC-CCC---C
T ss_pred cchhhEEECcCCcccc--cCC---CCCCCCEEEccCCccCcCCC-----------CCCcCcEEECCCCCCCc-CCc---c
Confidence 2455555555555553 332 23667777777777765321 22568999999999994 555 6
Q ss_pred CcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCC
Q 002289 305 LPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 350 (941)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~ 350 (941)
+++|+.|+|++|+|+ .+|..+..+ ++|+.|+|++|.|+..
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~~l~~l-----~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPESLIHL-----SSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGS-----CTTCEEECCSCCCCHH
T ss_pred cccCcEEeCCCCCCC-cCCHHHhhc-----cccCEEEecCCCCCCc
Confidence 789999999999999 889888764 4567999999999875
No 340
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.3e-21 Score=218.99 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=194.5
Q ss_pred CCCCCCCceEecCCCCC----CCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCC-CccCCccccce-e
Q 002289 62 PCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP-KEIGNIKSLEL-L 135 (941)
Q Consensus 62 ~c~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L 135 (941)
.|.|.|..|.|.+..+. +...++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +
T Consensus 6 ~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred ccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 48789999999864432 234679999999999996555689999999999999999977665 57899998775 6
Q ss_pred cccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccc-ccccccCchhccCCC-ccceeeccCCc
Q 002289 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN-NSISGQIPPELSRLP-SLVHMLLDNNN 213 (941)
Q Consensus 136 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~ 213 (941)
++++|+++...|..|.++++|++|++++|+|++..+..+....++..|++.+ |++....+..|..+. .|+.|+|++|+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 7788999988899999999999999999999988888888888999999966 677766666777765 68999999999
Q ss_pred CCCCCCccCCCCCCCCEEeccC-CcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCC
Q 002289 214 LTGYLPPELSELPKLLILQLDN-NNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNN 292 (941)
Q Consensus 214 l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N 292 (941)
|+. ++.......+|+.|++++ |.++. ..+..|.++++|++|+|++|+|+..++.. ..+|+.|.+.++
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----------~~~L~~L~~l~~ 233 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYG----------LENLKKLRARST 233 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTSCCCCCCSSS----------CTTCCEEECTTC
T ss_pred ccC-CChhhccccchhHHhhccCCcccC-CCHHHhccCcccchhhcCCCCcCccChhh----------hccchHhhhccC
Confidence 995 455555567899999985 66764 34467899999999999999999665431 234567766555
Q ss_pred cCCCCcchhhcCCcccceeecccccC
Q 002289 293 KLTGTIPSNFSGLPRLQRLFIANNSL 318 (941)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l 318 (941)
.--..+| .+.++++|+.++++++.-
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred CCcCcCC-CchhCcChhhCcCCCCcc
Confidence 4333666 478889999999987653
No 341
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.6e-24 Score=252.15 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=185.7
Q ss_pred ceeeEEEecCCCCCc----cCCccccCCCCCCEEEcccCCCCCCCCCcc-CCcc----ccceecccCccccC----CCCc
Q 002289 82 LHLRELQLLNLNLSG----NLSPEIGRLSYLTILDFMWNKISGSIPKEI-GNIK----SLELLLLNGNELTG----SLPE 148 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~----~L~~L~Ls~N~l~~----~~p~ 148 (941)
.+++.|+|++|++++ .++..+..+++|++|+|++|.++...+..+ ..+. +|++|+|++|+++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 357777787777764 245567777788888888877764333222 2233 58888888887773 4567
Q ss_pred ccCCcCccceeecccccccccCCccccc-----ccccceEecccccccccC----chhccCCCccceeeccCCcCCCCCC
Q 002289 149 ELGYLPKLDRIQIDQNYISGSLPKSFAN-----LNKTRHFHMNNNSISGQI----PPELSRLPSLVHMLLDNNNLTGYLP 219 (941)
Q Consensus 149 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p 219 (941)
.+..+++|++|+|++|.+++..+..+.. .++|++|+|++|++++.. +..+..+++|++|+|++|.++...+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 7777788888888888776544443332 456888888888777533 4555667788888888887765433
Q ss_pred ccCC-----CCCCCCEEeccCCcCCCCC---cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccC
Q 002289 220 PELS-----ELPKLLILQLDNNNFEGTT---IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSN 291 (941)
Q Consensus 220 ~~~~-----~l~~L~~L~Ls~N~l~~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~ 291 (941)
..+. ..++|++|+|++|.+++.. ++..+..+++|++|+|++|++++.... .+....+....+|++|+|++
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA--ELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH--HHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH--HHHHHHhcCCCCceEEECcC
Confidence 3332 2557888888888877521 466677778888888888877632100 00000011235678888888
Q ss_pred CcCCCC----cchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCC-----CCC-CCCCCcE
Q 002289 292 NKLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS-----GSF-NIPPNVT 361 (941)
Q Consensus 292 N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~-----~~~-~~~~~~~ 361 (941)
|.|+.. ++..+..+++|+.|+|++|++++..+..+...-.-..++|+.|+|++|.++... ..+ ..+.+++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 888764 577777788888888888888755555554433223357788888888887642 111 3567788
Q ss_pred EEecCCCC
Q 002289 362 VRLRGNPF 369 (941)
Q Consensus 362 l~l~~Np~ 369 (941)
|+|++|.+
T Consensus 346 L~Ls~n~i 353 (461)
T 1z7x_W 346 LQISNNRL 353 (461)
T ss_dssp EECCSSBC
T ss_pred EEccCCcc
Confidence 88888864
No 342
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=2.3e-22 Score=217.55 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=122.7
Q ss_pred hHHHHHHhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc------------------hhhHhHHHHHHHHHhc
Q 002289 601 YGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL------------------QGEKEFLTEIQFLSRL 662 (941)
Q Consensus 601 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l 662 (941)
...+......|.+.+.||+|+||.||+|.+.+|+.||||+++.... .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3444555666778899999999999999997799999999864321 1245688999999999
Q ss_pred CCCceeeeeeccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEE
Q 002289 663 HHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNIL 742 (941)
Q Consensus 663 ~h~nIv~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NIL 742 (941)
+ | +++.+++.. +..++||||+++|+|.+ +.. .....++.|+++||+|||+.+ |+||||||+|||
T Consensus 162 ~--~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NIL 225 (282)
T 1zar_A 162 Q--G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVL 225 (282)
T ss_dssp T--T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEE
T ss_pred c--C-CCcCeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEE
Confidence 9 5 666665543 56699999999999998 421 123469999999999999999 999999999999
Q ss_pred EcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccc
Q 002289 743 LDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFL 790 (941)
Q Consensus 743 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 790 (941)
++ ++.+||+|||+|+.. ..|+|||++.
T Consensus 226 l~-~~~vkl~DFG~a~~~--------------------~~~~a~e~l~ 252 (282)
T 1zar_A 226 VS-EEGIWIIDFPQSVEV--------------------GEEGWREILE 252 (282)
T ss_dssp EE-TTEEEECCCTTCEET--------------------TSTTHHHHHH
T ss_pred EE-CCcEEEEECCCCeEC--------------------CCCCHHHHHH
Confidence 99 999999999998732 3578899874
No 343
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.6e-23 Score=237.93 Aligned_cols=237 Identities=20% Similarity=0.287 Sum_probs=126.0
Q ss_pred eeeEEEecCCCCCcc----CCccccCCCCCCEEEcccC---CCCCCCCCcc-------CCccccceecccCccccC----
Q 002289 83 HLRELQLLNLNLSGN----LSPEIGRLSYLTILDFMWN---KISGSIPKEI-------GNIKSLELLLLNGNELTG---- 144 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~---- 144 (941)
+++.|+|++|++++. ++..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 456666666666554 2233556666666666664 3333444333 455666666666666664
Q ss_pred CCCcccCCcCccceeecccccccccCCcccc----cc---------cccceEeccccccc-ccCc---hhccCCCcccee
Q 002289 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFA----NL---------NKTRHFHMNNNSIS-GQIP---PELSRLPSLVHM 207 (941)
Q Consensus 145 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L 207 (941)
.+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|+|++|+++ +.++ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2455556666666666666666543333322 22 56666666666665 2333 344555666666
Q ss_pred eccCCcCC--C---CCCccCCCCCCCCEEeccCCcCC----CCCcchhccCCCCCcEEEccCCCCcCCCCCCCCC-Cccc
Q 002289 208 LLDNNNLT--G---YLPPELSELPKLLILQLDNNNFE----GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRI-PNLG 277 (941)
Q Consensus 208 ~L~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~l~ 277 (941)
+|++|+++ | ..+..+..+++|+.|+|++|.|+ + .+|..+..+++|++|+|++|+|++.... .+ ..+.
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~ 269 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSARGAA--AVVDAFS 269 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCHHHHH--HHHHHHH
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCchhhHH--HHHHHHh
Confidence 66666665 2 22335556666666666666663 2 3455566666666666666665532000 00 0000
Q ss_pred ccccCCcCEEEccCCcCCC----Ccchhh-cCCcccceeecccccCccCC
Q 002289 278 YLLSLNITTIKLSNNKLTG----TIPSNF-SGLPRLQRLFIANNSLSGSI 322 (941)
Q Consensus 278 ~l~~~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 322 (941)
.....+|++|+|++|.|++ .+|..+ .++++|+.|+|++|++++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 0113345666666666665 355554 44566666666666665444
No 344
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.4e-21 Score=199.93 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=143.9
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (941)
+.++++++.++ .+|..+ .++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56788888887 556544 458999999999999777777889999999999999999777777888999999999999
Q ss_pred cccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCC
Q 002289 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP 268 (941)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 268 (941)
++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++ ..+..|..+++|++|+|++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecCCC
Confidence 9997767778889999999999999987777778889999999999999886 455567888888888888887764433
Q ss_pred CCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcc
Q 002289 269 DLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPR 307 (941)
Q Consensus 269 ~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 307 (941)
+|+.|+++.|+++|.+|..++.++.
T Consensus 166 --------------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 166 --------------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------------CHHHHHHHHHhCCceeeccCccccC
Confidence 2355566666666666666665544
No 345
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.8e-23 Score=233.69 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=201.5
Q ss_pred EEEcccCCCCCCCCCccCCccccceecccCccccCCCC----cccCCcC-ccceeecccccccccCCcccccc-----cc
Q 002289 110 ILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP----EELGYLP-KLDRIQIDQNYISGSLPKSFANL-----NK 179 (941)
Q Consensus 110 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 179 (941)
.++|++|++++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.|++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999888878889999999999997777 7788898 99999999999998888888876 99
Q ss_pred cceEecccccccccCchhcc----CC-CccceeeccCCcCCCCCCccC----CC-CCCCCEEeccCCcCCCC---Ccchh
Q 002289 180 TRHFHMNNNSISGQIPPELS----RL-PSLVHMLLDNNNLTGYLPPEL----SE-LPKLLILQLDNNNFEGT---TIPAS 246 (941)
Q Consensus 180 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~---~~p~~ 246 (941)
|++|+|++|++++..+..+. .+ ++|++|+|++|++++..+..+ .. .++|++|+|++|+|++. .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999988777544 44 899999999999997766543 44 36999999999999852 13344
Q ss_pred ccCCC-CCcEEEccCCCCcCCCCCCCCCCccccccc-CCcCEEEccCCcCCCC----cchhhcCC-cccceeecccccCc
Q 002289 247 YSNMS-KLLKLSLRNCSLQGPMPDLSRIPNLGYLLS-LNITTIKLSNNKLTGT----IPSNFSGL-PRLQRLFIANNSLS 319 (941)
Q Consensus 247 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~-~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~ 319 (941)
+..++ +|++|+|++|+|++..+. .+... +... .+|++|+|++|.|++. ++..+..+ ++|+.|+|++|+|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~-l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCA--ELAKF-LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHH--HHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HhcCCccccEeeecCCCCchhhHH--HHHHH-HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 56666 999999999999865432 00000 0111 4789999999999973 56666664 59999999999999
Q ss_pred cCCCcccccccccCccccceEEccCCCCCCCCC--------CC-CCCCCcEEEecCCCCccC
Q 002289 320 GSIPSSIWQSRTLNATETFILDFQNNNLTNISG--------SF-NIPPNVTVRLRGNPFCLN 372 (941)
Q Consensus 320 ~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~--------~~-~~~~~~~l~l~~Np~~c~ 372 (941)
+..+..+..+. -..++|+.|+|++|.+..+.. .+ .++.++.|++++|++...
T Consensus 239 ~~~~~~l~~~~-~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLK-DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTT-TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHH-hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 76665544321 124578999999999666542 22 456688899999997554
No 346
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.5e-21 Score=212.52 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=152.4
Q ss_pred EcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccccccc
Q 002289 112 DFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS 191 (941)
Q Consensus 112 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (941)
.+..+.+...+ .+..+++|++|++++|.++. +| .+..+++|++|+|++|.+++..+ +..+++|++|+|++|+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 44555555332 34568888899999888884 45 57888888888888888886544 888888888888888888
Q ss_pred ccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCC
Q 002289 192 GQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLS 271 (941)
Q Consensus 192 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 271 (941)
+ ++ .+..+++|++|+|++|++++. + .+..+++|++|+|++|++++ ++. +..+++|++|+|++|++++..+ +.
T Consensus 99 ~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 99 N-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp C-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred C-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCChh-hc
Confidence 5 33 578888888888888888853 3 38888888888888888876 233 7788888888888888875433 22
Q ss_pred CCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCC
Q 002289 272 RIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS 351 (941)
Q Consensus 272 ~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~ 351 (941)
.+.+|+.|+|++|++++..+ +..+++|+.|+|++|++++..| +. ..++|+.|+|++|.++..+
T Consensus 171 --------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~-----~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 171 --------NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA-----NTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp --------TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT-----TCTTCCEEEEEEEEEECCC
T ss_pred --------CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc-----CCCCCCEEEccCCeeecCC
Confidence 23456888888888876544 7778888888888888874332 32 2345667777777776654
Q ss_pred C
Q 002289 352 G 352 (941)
Q Consensus 352 ~ 352 (941)
.
T Consensus 234 ~ 234 (308)
T 1h6u_A 234 V 234 (308)
T ss_dssp E
T ss_pred e
Confidence 3
No 347
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.5e-23 Score=236.33 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=154.6
Q ss_pred CCccccCCCCCCEEEcccCCCCCCC----CCccCCccccceecccCc---cccCCCCccc-------CCcCccceeeccc
Q 002289 98 LSPEIGRLSYLTILDFMWNKISGSI----PKEIGNIKSLELLLLNGN---ELTGSLPEEL-------GYLPKLDRIQIDQ 163 (941)
Q Consensus 98 ~~~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~ 163 (941)
++..+..+++|++|+|++|+|+... +..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 5667788889999999999888653 344778889999999885 4455566554 6788888888888
Q ss_pred ccccc----cCCcccccccccceEecccccccccCchhccC----C---------CccceeeccCCcCC-CCCC---ccC
Q 002289 164 NYISG----SLPKSFANLNKTRHFHMNNNSISGQIPPELSR----L---------PSLVHMLLDNNNLT-GYLP---PEL 222 (941)
Q Consensus 164 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~l~-~~~p---~~~ 222 (941)
|.+++ .+|..+..+++|++|+|++|+++...+..+.. + ++|++|+|++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88886 46777888888888888888887544433333 3 77777777777776 3333 345
Q ss_pred CCCCCCCEEeccCCcCCCC----CcchhccCCCCCcEEEccCCCCc----CCCCCCCCCCcccccccCCcCEEEccCCcC
Q 002289 223 SELPKLLILQLDNNNFEGT----TIPASYSNMSKLLKLSLRNCSLQ----GPMPDLSRIPNLGYLLSLNITTIKLSNNKL 294 (941)
Q Consensus 223 ~~l~~L~~L~Ls~N~l~~~----~~p~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l 294 (941)
..+++|+.|+|++|+|+.. ..+..+..+++|+.|+|++|.|+ +.++. .+....+|++|+|++|.|
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-------~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-------ALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-------HGGGCTTCCEEECTTCCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-------HHccCCCcCEEECCCCCC
Confidence 5667777777777777521 12335666777777777777764 11111 011223456666666666
Q ss_pred CCC----cchhhcC--CcccceeecccccCcc----CCCcccccccccCccccceEEccCCCCCC
Q 002289 295 TGT----IPSNFSG--LPRLQRLFIANNSLSG----SIPSSIWQSRTLNATETFILDFQNNNLTN 349 (941)
Q Consensus 295 ~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~ 349 (941)
++. ++..+.. +++|+.|+|++|+|++ .+|..+.. ..++|+.|+|++|.++.
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~----~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE----KMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH----HCTTCCEEECTTSBSCT
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh----cCCCceEEEccCCcCCc
Confidence 654 4455532 6666666666666664 24444311 12344455555555543
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.1e-22 Score=222.62 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=194.4
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCC-CCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGS-IPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
.+++.|++.+|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|+|++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4689999999999987655 66899999999999999865 888899999999999999999988899999999999999
Q ss_pred cccc-ccccc-CCcccccccccceEecccc-ccccc-CchhccCCC-ccceeeccCC--cCC-CCCCccCCCCCCCCEEe
Q 002289 161 IDQN-YISGS-LPKSFANLNKTRHFHMNNN-SISGQ-IPPELSRLP-SLVHMLLDNN--NLT-GYLPPELSELPKLLILQ 232 (941)
Q Consensus 161 Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~ 232 (941)
|++| .+++. ++..+.++++|++|+|++| ++++. ++..+..++ +|++|+|++| .++ +.++..+.++++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 78863 6777899999999999999 99865 577788999 9999999999 555 45677788899999999
Q ss_pred ccCCc-CCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCc-ccce
Q 002289 233 LDNNN-FEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLP-RLQR 310 (941)
Q Consensus 233 Ls~N~-l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~ 310 (941)
|++|. +++ ..+..+..+++|++|++++|. +..+. .+. .+....+|+.|+|++| +.. ..+..+. +|..
T Consensus 229 l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~--~~~~~--~~~--~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~ 297 (336)
T 2ast_B 229 LSDSVMLKN-DCFQEFFQLNYLQHLSLSRCY--DIIPE--TLL--ELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPH 297 (336)
T ss_dssp CTTCTTCCG-GGGGGGGGCTTCCEEECTTCT--TCCGG--GGG--GGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTT
T ss_pred CCCCCcCCH-HHHHHHhCCCCCCEeeCCCCC--CCCHH--HHH--HHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcc
Confidence 99999 665 567789999999999999996 11121 111 1223567899999999 442 2344443 4778
Q ss_pred eecccccCccCCCccccc
Q 002289 311 LFIANNSLSGSIPSSIWQ 328 (941)
Q Consensus 311 L~Ls~N~l~~~~p~~~~~ 328 (941)
|++++|++++..|..+..
T Consensus 298 L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 298 LQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SEESCCCSCCTTCSSCSS
T ss_pred eEEecccCccccCCcccc
Confidence 889999999999988754
No 349
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=5.1e-21 Score=215.05 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=85.1
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccC-CcCccceeecccccccccCCcccccccccceEeccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELG-YLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (941)
+.+++++|+|+ .+|..+. ..|+.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46788888887 4665543 3577777877777766666666 777777777777777766666666666666666666
Q ss_pred ccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|+|++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66665555556666666666666666665555555555555555555555553
No 350
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=5.7e-20 Score=192.58 Aligned_cols=157 Identities=22% Similarity=0.301 Sum_probs=116.7
Q ss_pred CCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccc
Q 002289 63 CTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL 142 (941)
Q Consensus 63 c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 142 (941)
|.|+|++|.|... +++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 17 ~~Cs~~~v~c~~~-----------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 17 CSCSGTTVDCRSK-----------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CEEETTEEECTTS-----------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEeCCEeEccCC-----------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 4457999999543 233 3444333 7888888888888888888888888888888888888
Q ss_pred cCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccC
Q 002289 143 TGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL 222 (941)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 222 (941)
+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 8666667788888888888888888766667777777777777777777 666667777777777777777776555566
Q ss_pred CCCCCCCEEeccCCcCCC
Q 002289 223 SELPKLLILQLDNNNFEG 240 (941)
Q Consensus 223 ~~l~~L~~L~Ls~N~l~~ 240 (941)
..+++|+.|+|++|.+.+
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 666677777777666654
No 351
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.2e-20 Score=193.24 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=100.6
Q ss_pred CCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccC
Q 002289 91 NLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSL 170 (941)
Q Consensus 91 ~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 170 (941)
+++++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..
T Consensus 20 ~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 20 GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 34454 3454443 57788888888887666667777888888888888887777777777777777777777777555
Q ss_pred CcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCC
Q 002289 171 PKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (941)
Q Consensus 171 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 239 (941)
+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555666777777777777776666666666666666666666666555555666666666666666654
No 352
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=7.3e-20 Score=190.49 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=98.6
Q ss_pred EEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCC-CccCCccccceecccCccccCCCCcccCCcCccceeecccc
Q 002289 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP-KEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (941)
Q Consensus 86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 164 (941)
.+++++++++. +|..+. ..+++|+|++|+|++..| ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45556666663 555442 345777777777776544 34677777777777777777666666777777777777777
Q ss_pred cccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7766666666666666666666666666556666666666666666666665555666666666666666666554
No 353
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=4.4e-21 Score=234.50 Aligned_cols=220 Identities=19% Similarity=0.205 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCcCC-CCCCCCCCC-CCCCCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCC----
Q 002289 35 IEVSALRSIKKSLVDD-YSKLSNWNR-GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYL---- 108 (941)
Q Consensus 35 ~d~~aL~~~k~~~~~~-~~~~~~w~~-~~~c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L---- 108 (941)
.+.++|.++..+.... ...-..|.. ..++ +.|.++.+... +++.|+|.++++... +..+.....|
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~-------~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDSTPS-GTATNSAVSTP-------LTPKIELFANGKDEA-NQALLQHKKLSQYS 202 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCCCcc-ccCCCceecCC-------ccceEEeeCCCCCcc-hhhHhhcCccCccc
Confidence 4578888888777533 223345643 3333 36888877543 588999999888863 3333222222
Q ss_pred -CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccc
Q 002289 109 -TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (941)
Q Consensus 109 -~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (941)
..++++.|.+. ..|..|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.+|++|++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 23334445554 56788899999999999999998 77777779999999999999998 8888899999999999999
Q ss_pred ccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCC-CcEEEccCCCCcCC
Q 002289 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSK-LLKLSLRNCSLQGP 266 (941)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~-L~~L~Ls~N~l~~~ 266 (941)
|+|+ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|+.|+|++|.|++ .+|..+..+.. +..|+|++|.++|.
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCc
Confidence 9999 77888999999999999999997 778889999999999999999988 67777655432 23467888888877
Q ss_pred CCC
Q 002289 267 MPD 269 (941)
Q Consensus 267 ~~~ 269 (941)
+|.
T Consensus 357 ~p~ 359 (727)
T 4b8c_D 357 LPH 359 (727)
T ss_dssp CCC
T ss_pred Ccc
Confidence 664
No 354
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.5e-19 Score=209.08 Aligned_cols=159 Identities=29% Similarity=0.397 Sum_probs=88.8
Q ss_pred CccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEec
Q 002289 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQL 233 (941)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 233 (941)
++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +|++|+|++|+|++ +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 33444444444444 233 223444455555555543 333 332 55555555555554 333 3455666666
Q ss_pred cCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCccc-----
Q 002289 234 DNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRL----- 308 (941)
Q Consensus 234 s~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L----- 308 (941)
++|+|++ +|. .+++|++|+|++|+|++ +|.+. .+|+.|+|++|+|+ .+|. |.. +|
T Consensus 148 s~N~l~~--lp~---~l~~L~~L~Ls~N~L~~-lp~l~----------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 148 DNNQLTM--LPE---LPTSLEVLSVRNNQLTF-LPELP----------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCCCC----------TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred CCCccCc--CCC---cCCCcCEEECCCCCCCC-cchhh----------CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 6666554 333 34566666666666654 22111 34567777777776 4454 443 55
Q ss_pred --ceeecccccCccCCCcccccccccCccccceEEccCCCCCCC
Q 002289 309 --QRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 350 (941)
Q Consensus 309 --~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~ 350 (941)
+.|+|++|+|+ .+|..++.+ ++|+.|+|++|.|++.
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l-----~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSL-----DPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGS-----CTTEEEECCSSSCCHH
T ss_pred cceEEecCCCcce-ecCHHHhcC-----CCCCEEEeeCCcCCCc
Confidence 99999999998 688877654 4567889999988764
No 355
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=203.61 Aligned_cols=176 Identities=21% Similarity=0.273 Sum_probs=147.2
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccC-CccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIG-NIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
+.+++++++|+. +|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 356677777774 565553 4689999999999988888887 999999999999999988888999999999999999
Q ss_pred ccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccC---CCCCCCCEEeccCCcCCC
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL---SELPKLLILQLDNNNFEG 240 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 240 (941)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998888899999999999999999998889999999999999999999996555555 568999999999999986
Q ss_pred CCcchhccCCCCC--cEEEccCCCCc
Q 002289 241 TTIPASYSNMSKL--LKLSLRNCSLQ 264 (941)
Q Consensus 241 ~~~p~~~~~l~~L--~~L~Ls~N~l~ 264 (941)
..+..+..++++ +.|+|++|.+.
T Consensus 178 -l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 -LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -cCHHHhhhccHhhcceEEecCCCcc
Confidence 344567766653 56666666654
No 356
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.1e-19 Score=185.67 Aligned_cols=152 Identities=21% Similarity=0.314 Sum_probs=131.8
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (941)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46888999998 6776654 68999999999999877788999999999999999999888999999999999999999
Q ss_pred cccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCc
Q 002289 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (941)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~ 264 (941)
+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++ ..+..|..+++|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence 9996666678889999999999999998888889999999999999999987 45667888888888888888775
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=185.52 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=134.4
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCC-cccCCcCccceeecccccccccCCcccccccccceEeccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP-EELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (941)
+.+++++|.++ .+|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 5776654 357899999999997755 4588999999999999999988888999999999999999
Q ss_pred ccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcC
Q 002289 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
|+|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++ ..|..|..+++|+.|+|++|.++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcC
Confidence 99998888889999999999999999998888999999999999999999987 568888888888888888888764
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.2e-19 Score=193.06 Aligned_cols=172 Identities=28% Similarity=0.419 Sum_probs=88.5
Q ss_pred cCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccce
Q 002289 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (941)
Q Consensus 103 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 182 (941)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++|++++..+ +.++++|++|+|++|.+++. + .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCE
Confidence 345556666666666553 23 35555666666666666654332 55555555555555555531 2 2455555555
Q ss_pred EecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCC
Q 002289 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCS 262 (941)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~ 262 (941)
|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|+|++|++++ ..+ +..+++|
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L--------- 180 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL--------- 180 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTC---------
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hcCCCcc---------
Confidence 55555555432 2344445555555555555432 334444444455554444443 111 3444444
Q ss_pred CcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCcc
Q 002289 263 LQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 320 (941)
Q Consensus 263 l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (941)
+.|+|++|+|++. + .+..+++|+.|++++|+++.
T Consensus 181 ----------------------~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 ----------------------QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----------------------CEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ----------------------CEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4444444444432 2 36667777777777777763
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=5.9e-19 Score=191.91 Aligned_cols=170 Identities=26% Similarity=0.353 Sum_probs=150.9
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+.+++.|++++|++... +.+..+++|++|+|++|++++..+ +.++++|++|+|++|++++ +| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 45699999999999865 458999999999999999996555 9999999999999999995 34 499999999999
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|++|+|++|++++..+ +..+++|+.|+|++|.|++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999965 5789999999999999999965 678999999999999999997654 9999999999999999986
Q ss_pred CCcchhccCCCCCcEEEccCCCCcC
Q 002289 241 TTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 241 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
++ .+..+++|+.|++++|+++.
T Consensus 193 --l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 --LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --Ch-hhccCCCCCEEECcCCcccC
Confidence 44 48899999999999998874
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5e-19 Score=211.01 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=14.7
Q ss_pred CEEEccCCcCCCCcchhhcCCcccceeecccccCc
Q 002289 285 TTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 319 (941)
Q Consensus 285 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (941)
+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 178 ~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 178 QNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 4444444444432 23444455555555555544
No 361
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.7e-18 Score=181.40 Aligned_cols=151 Identities=22% Similarity=0.307 Sum_probs=117.5
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (941)
+.+++++++++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 46788888887 6665544 78888888888888888888888888888888888887666677788888888888888
Q ss_pred cccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCc
Q 002289 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (941)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~ 264 (941)
+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++ ..+..|..+++|+.|+|++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCcc
Confidence 888666666777888888888888887 667777778888888888888875 34456777777777777777665
No 362
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=3.8e-21 Score=227.95 Aligned_cols=207 Identities=18% Similarity=0.172 Sum_probs=140.9
Q ss_pred cCCCCCCEEEcccCCCCCCCCCccCCccccceecccCcc-------------ccCCCCcccCCcCccceee-cccccccc
Q 002289 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-------------LTGSLPEELGYLPKLDRIQ-IDQNYISG 168 (941)
Q Consensus 103 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~ 168 (941)
...++|+.|+|++|+|+ .+|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45666666777777666 566666667777777766554 3444455555555555555 444433
Q ss_pred cCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhcc
Q 002289 169 SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYS 248 (941)
Q Consensus 169 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~ 248 (941)
..|..+.+++|.++.. +. ..|+.|+|++|+|++ +|. |+++++|+.|+|++|+|+ .+|..|+
T Consensus 423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~ 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALA 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGG
T ss_pred ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhh
Confidence 2334444555555532 21 258889999999986 565 888999999999999998 5788899
Q ss_pred CCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCc-chhhcCCcccceeecccccCccCCCcccc
Q 002289 249 NMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTI-PSNFSGLPRLQRLFIANNSLSGSIPSSIW 327 (941)
Q Consensus 249 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (941)
++++|+.|+|++|+|++. |.+.. +.+|+.|+|++|+|++.. |..|+.+++|+.|+|++|+|++..| .+.
T Consensus 484 ~l~~L~~L~Ls~N~l~~l-p~l~~--------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~ 553 (567)
T 1dce_A 484 ALRCLEVLQASDNALENV-DGVAN--------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQE 553 (567)
T ss_dssp GCTTCCEEECCSSCCCCC-GGGTT--------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTT
T ss_pred cCCCCCEEECCCCCCCCC-cccCC--------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHH
Confidence 999999999999998863 33332 345688999999998887 8899999999999999999986544 332
Q ss_pred cccccCccccceEEc
Q 002289 328 QSRTLNATETFILDF 342 (941)
Q Consensus 328 ~l~~l~~~~L~~L~L 342 (941)
.+.. ..++|++||+
T Consensus 554 ~l~~-~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAE-MLPSVSSILT 567 (567)
T ss_dssp HHHH-HCTTCSEEEC
T ss_pred HHHH-HCcccCccCC
Confidence 2211 1345556653
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=9e-19 Score=208.80 Aligned_cols=199 Identities=26% Similarity=0.342 Sum_probs=133.4
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
.+..+.+..+.+...+ .+..|++|+.|+|++|.|.. +| .|..+++|+.|+|++|+|++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444555555555443 24567777777888777773 44 47777778888888887775444 7777778888888
Q ss_pred cccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCC
Q 002289 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (941)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 242 (941)
+|.|++. | .+..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++ .
T Consensus 96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~ 168 (605)
T 1m9s_A 96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-I 168 (605)
T ss_dssp SSCCCCC-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-C
T ss_pred CCCCCCC-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-c
Confidence 8777742 2 57777777777777777774 2 3467777777777777777754 567777777777777777775 3
Q ss_pred cchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCC
Q 002289 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGL 305 (941)
Q Consensus 243 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l 305 (941)
.| +..+++|+.|+|++|+|++. +.+. .+.+|+.|+|++|++.+.....+..+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~~l~--------~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-RALA--------GLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-GGGT--------TCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred hh--hccCCCCCEEECcCCCCCCC-hHHc--------cCCCCCEEEccCCcCcCCcccccccE
Confidence 33 77777777777777777653 2222 22455777777777775444333333
No 364
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.8e-18 Score=175.25 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=116.4
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccc
Q 002289 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR 181 (941)
Q Consensus 102 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 181 (941)
.+.+++|+.|++++|.++ .+| .+..+++|++|+|++|.++ .+..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356677888888888887 555 5778888888888888665 234677788888888888888877777888888888
Q ss_pred eEecccccccccCchhccCCCccceeeccCCc-CCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccC
Q 002289 182 HFHMNNNSISGQIPPELSRLPSLVHMLLDNNN-LTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN 260 (941)
Q Consensus 182 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~ 260 (941)
+|+|++|++++..+..+..+++|++|+|++|+ ++ .++ .+..+++|+.|+|++|++++ ++ .+..+++|++|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeC
Confidence 88888888887777778888888888888887 54 444 57778888888888888875 33 677778888888888
Q ss_pred CCCc
Q 002289 261 CSLQ 264 (941)
Q Consensus 261 N~l~ 264 (941)
|+|.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 7765
No 365
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=2.5e-18 Score=183.46 Aligned_cols=136 Identities=19% Similarity=0.108 Sum_probs=106.8
Q ss_pred CCccceeeccCcEEEEEEEe-CCCcE--EEEEEeccCCch------------------------hhHhHHHHHHHHHhcC
Q 002289 611 FNSSTQIGQGGYGKVYKGIL-PDGTV--VAVKRAQEGSLQ------------------------GEKEFLTEIQFLSRLH 663 (941)
Q Consensus 611 y~~~~~lG~G~fg~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l~ 663 (941)
|++.+.||+|+||.||+|.+ .+|+. ||||+++..... ....+.+|++++++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999997 68888 999987543111 1136789999999998
Q ss_pred CCce--eeeeeccccCCcEEEEEecCCC-C----CHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhh-cCCCCCeEecc
Q 002289 664 HRNL--VSLVGYCDEEGEQMLVYEFMSN-G----TLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLH-TEADPPVFHRD 735 (941)
Q Consensus 664 h~nI--v~l~~~~~~~~~~~LV~e~~~~-g----sL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~ivH~D 735 (941)
|+++ ..++++ +..+|||||+.+ | +|.++... .++..+..++.|++.||.||| +.+ |+|||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrD 196 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAE---LVHAD 196 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSC---EECSS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCC---EEeCC
Confidence 8764 334432 357899999942 3 77776532 234456789999999999999 888 99999
Q ss_pred CCCCcEEEcCCCcEEEeeecccccc
Q 002289 736 IKASNILLDHKFTAKVADFGLSRLA 760 (941)
Q Consensus 736 Lkp~NILl~~~~~~kl~DFGla~~~ 760 (941)
|||+|||++. .++|+|||+|...
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEET
T ss_pred CCHHHEEEcC--cEEEEECcccccC
Confidence 9999999998 9999999999754
No 366
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-18 Score=183.47 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=104.1
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+++.+++.++++++.. .+..+++|+.|++++|+|+ .+| .+..+++|++|+|++|++++..+ +.++++|++|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666666666432 4666777777777777776 344 56677777777777777774433 667777777777
Q ss_pred ccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCC
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 241 (941)
++|++++. |... . ++|+.|+|++|++++. + .+..+++|+.|+|++|++++. + .+..+++|+.|+|++|++++.
T Consensus 93 ~~N~l~~l-~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 77777643 2222 2 6666666666666642 2 466666666666666666643 2 466666666666666666642
Q ss_pred CcchhccCCCCCcEEEccCCCCcC
Q 002289 242 TIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 242 ~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
..+..+++|+.|++++|++++
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEEEC
T ss_pred ---HHhccCCCCCEEeCCCCcccC
Confidence 455666666666666666553
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=8.5e-20 Score=216.38 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=160.5
Q ss_pred CCccccceecccCccccCCCCcccCCcCccceeeccccc-------------ccccCCcccccccccceEe-cccccccc
Q 002289 127 GNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY-------------ISGSLPKSFANLNKTRHFH-MNNNSISG 192 (941)
Q Consensus 127 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 192 (941)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. +.+.+|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788899999999998 788889999999999987775 5566677777788888777 6666543
Q ss_pred cCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCC
Q 002289 193 QIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSR 272 (941)
Q Consensus 193 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 272 (941)
+|..+.+++|.++...+ ..|+.|+|++|+|++ +|. |..+++|+.|+|++|+|+..+..+.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~- 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALA- 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGG-
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhh-
Confidence 56667777888774322 258999999999996 566 9999999999999999994433232
Q ss_pred CCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCC-CcccccccccCccccceEEccCCCCCCCC
Q 002289 273 IPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI-PSSIWQSRTLNATETFILDFQNNNLTNIS 351 (941)
Q Consensus 273 l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~ 351 (941)
.+.+|+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.. |..+..++ +|+.|+|++|.|++++
T Consensus 484 -------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 484 -------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGSS
T ss_pred -------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCCc
Confidence 34567999999999997 67 8999999999999999999876 99887654 5669999999999987
Q ss_pred CCC-----CCCCCcEEEe
Q 002289 352 GSF-----NIPPNVTVRL 364 (941)
Q Consensus 352 ~~~-----~~~~~~~l~l 364 (941)
... .+|.+..|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 654 2677777653
No 368
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.1e-17 Score=170.68 Aligned_cols=152 Identities=21% Similarity=0.281 Sum_probs=134.1
Q ss_pred cceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
+.+++.|++++|+++ .++ .+..+++|++|++++|.++ . +..+..+++|++|+|++|++++..+..|+.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 346899999999998 455 7999999999999999776 3 34799999999999999999988899999999999999
Q ss_pred cccccccccCCcccccccccceEeccccc-ccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNS-ISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 239 (941)
|++|++++..+..+..+++|++|+|++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999998889999999999999999998 55 566 68999999999999999996 44 7899999999999999986
Q ss_pred C
Q 002289 240 G 240 (941)
Q Consensus 240 ~ 240 (941)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 369
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=3.4e-18 Score=208.96 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEec
Q 002289 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 185 (941)
+.++.|+|++|.+.. ++.. .|+.++|+.|.|.+ ++++.|.+. ..++.|..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 557888888888874 3333 34455555555442 233334433 34445555555555555
Q ss_pred ccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcC
Q 002289 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
++|++. .+|..+..+++|++|+|++|+|+ .+|..|+++++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+.
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCc
Confidence 555555 44444445555555555555555 45555555555555555555555 345555555555555555555553
Q ss_pred CCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcc-cceeecccccCccCCCccc
Q 002289 266 PMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPR-LQRLFIANNSLSGSIPSSI 326 (941)
Q Consensus 266 ~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~ 326 (941)
.+..+..+ .+|++|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|..+
T Consensus 308 lp~~~~~l--------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 308 LPWEFGNL--------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CCSSTTSC--------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred cChhhhcC--------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 32222222 23466666666666666666655432 2346777777777776654
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=8.5e-18 Score=179.86 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=112.3
Q ss_pred CccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCcccee
Q 002289 128 NIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHM 207 (941)
Q Consensus 128 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 207 (941)
.+.++..++|++|.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 455666667777766633 2 45666677777777777663 33 56667777777777777764333 6677777777
Q ss_pred eccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEE
Q 002289 208 LLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTI 287 (941)
Q Consensus 208 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L 287 (941)
+|++|++++ +|. +.. ++|+.|+|++|+|++ + ..+..+++|+.|+|++|+|++. +. +..+.+|+.|
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~--~-~~l~~l~~L~~L~Ls~N~i~~~-~~--------l~~l~~L~~L 155 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD--T-DSLIHLKNLEILSIRNNKLKSI-VM--------LGFLSKLEVL 155 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB--S-GGGTTCTTCCEEECTTSCCCBC-GG--------GGGCTTCCEE
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC--C-hhhcCcccccEEECCCCcCCCC-hH--------HccCCCCCEE
Confidence 777777764 332 222 677777777777765 2 3477777777777777777643 11 1223456777
Q ss_pred EccCCcCCCCcchhhcCCcccceeecccccCccC
Q 002289 288 KLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 321 (941)
Q Consensus 288 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (941)
+|++|+|++. ..+..+++|+.|++++|++++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7777777765 6677888888888888888743
No 371
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=3e-19 Score=214.43 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=58.5
Q ss_pred cCCcCEEEccCC--cCCCCcchhhcC-CcccceeecccccCccCC-CcccccccccCccccceEEccCCCCCCC--CCCC
Q 002289 281 SLNITTIKLSNN--KLTGTIPSNFSG-LPRLQRLFIANNSLSGSI-PSSIWQSRTLNATETFILDFQNNNLTNI--SGSF 354 (941)
Q Consensus 281 ~~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~-p~~~~~l~~l~~~~L~~L~Ls~N~l~~~--~~~~ 354 (941)
..+|+.|+|+++ .+++..+..+.. +++|+.|+|++|++++.. +..+.. .++|+.|+|++|.|+.. +...
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG-----CPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC-----CTTCCEEEEESCCCBHHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc-----CcccCeeeccCCCCcHHHHHHHH
Confidence 456788888753 366666666554 788999999999887532 222222 35678999999997542 2111
Q ss_pred -CCCCCcEEEecCCCCcc
Q 002289 355 -NIPPNVTVRLRGNPFCL 371 (941)
Q Consensus 355 -~~~~~~~l~l~~Np~~c 371 (941)
.++.++.|+|++|++.-
T Consensus 510 ~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHCSSCCEEEEESCBCCT
T ss_pred HhcCccCeeECcCCcCCH
Confidence 57888999999998543
No 372
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=7.7e-17 Score=163.80 Aligned_cols=129 Identities=26% Similarity=0.394 Sum_probs=76.9
Q ss_pred CEEEcccCCCCCCCCCccCCccccceecccCccccCCCCc-ccCCcCccceeecccccccccCCcccccccccceEeccc
Q 002289 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPE-ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (941)
Q Consensus 109 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (941)
+.|++++|+++ .+|..+.. +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 55654433 666777777776655443 366666666666666666665566666666666666666
Q ss_pred ccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 66665555555555555555555555555555555555555555555555543
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=8.8e-17 Score=163.33 Aligned_cols=131 Identities=22% Similarity=0.268 Sum_probs=95.2
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCC-ccCCccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPK-EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
+.|++++++++ .+|..+.. +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46777777774 45555533 777777777777755553 377777777777777777777777777777777777777
Q ss_pred ccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCC
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYL 218 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 218 (941)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 7777777777777777777777777777777777777777777777777777543
No 374
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=9.3e-17 Score=160.85 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=77.3
Q ss_pred CCCCCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 61 ~~c~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
+.|.|.|.+|.|... +++ .+|..+ .++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 3 ~~C~C~~~~l~~~~~-----------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSK-----------------GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTCEEETTEEECCSS-----------------CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCEeCCCEEEecCC-----------------CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC
Confidence 567778888888543 333 233222 256777777777777655556667777777777777
Q ss_pred cccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCC
Q 002289 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|.++
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 776555555666666666666666666544444555555555555555554333333344444444444444444
No 375
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.3e-16 Score=158.35 Aligned_cols=133 Identities=23% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCCCCEEEcccCCCC-CCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceE
Q 002289 105 LSYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (941)
Q Consensus 105 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 183 (941)
.++|++|+|++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777766 56666666677777777777776644 556666666666666666665556555556666666
Q ss_pred ecccccccccC-chhccCCCccceeeccCCcCCCCCC---ccCCCCCCCCEEeccCCcCC
Q 002289 184 HMNNNSISGQI-PPELSRLPSLVHMLLDNNNLTGYLP---PELSELPKLLILQLDNNNFE 239 (941)
Q Consensus 184 ~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~ 239 (941)
+|++|+|++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665321 1455555555555555555554333 24555555555555555544
No 376
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=4.6e-18 Score=204.11 Aligned_cols=278 Identities=12% Similarity=0.079 Sum_probs=167.7
Q ss_pred ceeeEEEecCCCCCccCCccccCC--CCCCEEEcccCC-CCC-CCCCccCCccccceecccCccccCC----CCcccCCc
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRL--SYLTILDFMWNK-ISG-SIPKEIGNIKSLELLLLNGNELTGS----LPEELGYL 153 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l 153 (941)
.++++|+|+++.+++..+..+..+ .+|++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+.++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 357777777777666555555543 347777777765 210 1122223567788888888877655 33345567
Q ss_pred Cccceeeccccccc----ccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCC---CCCCccCCCCC
Q 002289 154 PKLDRIQIDQNYIS----GSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT---GYLPPELSELP 226 (941)
Q Consensus 154 ~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~l~ 226 (941)
++|++|+|++|.++ +.++..+.++++|+.|+|++|.+.+ ++..+..+++|++|+++.+... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 77888888888876 2344455677888888888888774 5667777778888877753322 23334566677
Q ss_pred CCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCC-C-CCCCCccccc----------------ccCCcCEEE
Q 002289 227 KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-D-LSRIPNLGYL----------------LSLNITTIK 288 (941)
Q Consensus 227 ~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~-~~~l~~l~~l----------------~~~~L~~L~ 288 (941)
+|+.|+++++... .+|..+..+++|++|+|++|.+++... . +..++++..+ ...+|++|+
T Consensus 271 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 271 KLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 7777777775433 467777778888888888887653211 0 1222332222 124577777
Q ss_pred cc-----------CCcCCCCc-chhhcCCcccceeecccccCccCCCcccccccccCccccceEEcc----CCCCCCCCC
Q 002289 289 LS-----------NNKLTGTI-PSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQ----NNNLTNISG 352 (941)
Q Consensus 289 Ls-----------~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls----~N~l~~~~~ 352 (941)
|+ .|.+++.. +..+..+++|++|+++.|++++..+..+.. ..++|+.|+|+ .|.++..+.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT----YLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH----HCCSCCEEEEEECSCCSCCSSCCC
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh----hCCCCcEEEEeecCCCccccCchH
Confidence 77 35565432 223445677777777777776554444432 12355677774 666665432
Q ss_pred C------C-CCCCCcEEEecC
Q 002289 353 S------F-NIPPNVTVRLRG 366 (941)
Q Consensus 353 ~------~-~~~~~~~l~l~~ 366 (941)
+ + .++.++.|+|+.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEec
Confidence 2 1 356666676654
No 377
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-16 Score=156.43 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=117.7
Q ss_pred ccccceecccCcccc-CCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCcccee
Q 002289 129 IKSLELLLLNGNELT-GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHM 207 (941)
Q Consensus 129 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 207 (941)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999998 78888899999999999999999876 788999999999999999998788888889999999
Q ss_pred eccCCcCCCCCC-ccCCCCCCCCEEeccCCcCCCCCcc---hhccCCCCCcEEEccCCCCcCCC
Q 002289 208 LLDNNNLTGYLP-PELSELPKLLILQLDNNNFEGTTIP---ASYSNMSKLLKLSLRNCSLQGPM 267 (941)
Q Consensus 208 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~ 267 (941)
+|++|++++... ..+..+++|+.|+|++|.+++ ..+ ..+..+++|++|++++|.++..+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999986432 788999999999999999986 333 47889999999999999887443
No 378
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=159.05 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=67.5
Q ss_pred EEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccc
Q 002289 87 LQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYI 166 (941)
Q Consensus 87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 166 (941)
+++++++++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 444455555 3443332 45666666666665 4555555555555555555555554445555555555555555555
Q ss_pred cccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 167 SGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 167 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
++..|. .|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 91 ~~i~~~------------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPR------------------------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTT------------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHH------------------------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 544444 44455555555555555554444445556666666666666553
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=156.67 Aligned_cols=127 Identities=21% Similarity=0.352 Sum_probs=98.6
Q ss_pred eecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCc
Q 002289 134 LLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN 213 (941)
Q Consensus 134 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 213 (941)
.+++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555554 3443332 35666666666665 555667777777777777777777777778889999999999999
Q ss_pred CCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcC
Q 002289 214 LTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (941)
Q Consensus 214 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 265 (941)
|++..+..|.++++|++|+|++|+|++ ..+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeec
Confidence 998888899999999999999999996 456679999999999999999873
No 380
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.6e-16 Score=154.26 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=37.0
Q ss_pred CCCCEEEcccCCCC-CCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEe
Q 002289 106 SYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFH 184 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 184 (941)
++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 34444444444444444444444432 3344444444444444444433343333344444444
Q ss_pred ccccccc
Q 002289 185 MNNNSIS 191 (941)
Q Consensus 185 L~~N~l~ 191 (941)
|++|+++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 4444443
No 381
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.5e-16 Score=151.86 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=111.4
Q ss_pred CccccceecccCcccc-CCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccce
Q 002289 128 NIKSLELLLLNGNELT-GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVH 206 (941)
Q Consensus 128 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 206 (941)
..++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999998 78888899999999999999999876 77889999999999999999878888888999999
Q ss_pred eeccCCcCCCC-CCccCCCCCCCCEEeccCCcCCCCCcc---hhccCCCCCcEEEccC
Q 002289 207 MLLDNNNLTGY-LPPELSELPKLLILQLDNNNFEGTTIP---ASYSNMSKLLKLSLRN 260 (941)
Q Consensus 207 L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~p---~~~~~l~~L~~L~Ls~ 260 (941)
|++++|++++. .+..+..+++|++|+|++|++++ ..+ ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 99999999864 34778889999999999999986 333 4788888888888763
No 382
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.5e-15 Score=150.37 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=78.1
Q ss_pred CCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceEeccc
Q 002289 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (941)
Q Consensus 108 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (941)
.+.+++++|+++ .+|..+ .++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356677777776 444333 25677777777777655555566666677766666666655555566666666666666
Q ss_pred ccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66665544455555666666666666654444444555555555555555554
No 383
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=3.6e-16 Score=173.26 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=98.5
Q ss_pred cCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCc-----hh---------hHhH--------HHHHHHHHhcCCCc
Q 002289 609 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL-----QG---------EKEF--------LTEIQFLSRLHHRN 666 (941)
Q Consensus 609 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~---------~~~~--------~~E~~~l~~l~h~n 666 (941)
.-|++.++||+|+||.||+|...+|+.||||+++.... .. .... .+|...|.++.+.+
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34889999999999999999998999999998763211 00 0112 23455555554333
Q ss_pred ee--eeeeccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEc
Q 002289 667 LV--SLVGYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLD 744 (941)
Q Consensus 667 Iv--~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~ 744 (941)
+. ..++ ....+|||||++|++|.++... .....++.|++.+|.|||+.+ ||||||||.|||++
T Consensus 175 v~vp~p~~----~~~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~ 239 (397)
T 4gyi_A 175 FPVPEPIA----QSRHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHG---LIHGDFNEFNILIR 239 (397)
T ss_dssp CSCCCEEE----EETTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE
T ss_pred CCCCeeee----ccCceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEe
Confidence 21 1111 1234799999999888765421 123467899999999999999 99999999999998
Q ss_pred CCC----------cEEEeeecccccc
Q 002289 745 HKF----------TAKVADFGLSRLA 760 (941)
Q Consensus 745 ~~~----------~~kl~DFGla~~~ 760 (941)
+++ .+.|+||+-+...
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCCcccccccccceEEEEeCCcccC
Confidence 776 4899999987643
No 384
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=1.4e-17 Score=199.83 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=86.0
Q ss_pred ceeeEEEecCCCCCccCCcccc-CCCCCCEEEcccC-CCCCC-CCCccCCccccceecccCccccCCCCcccC----CcC
Q 002289 82 LHLRELQLLNLNLSGNLSPEIG-RLSYLTILDFMWN-KISGS-IPKEIGNIKSLELLLLNGNELTGSLPEELG----YLP 154 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~ 154 (941)
.++++|+|+++.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4688999999888876666665 6889999999988 55432 344445788999999999988765544443 567
Q ss_pred ccceeeccccc--ccc-cCCcccccccccceEecccc-cccccCchhccCCCccceeecc
Q 002289 155 KLDRIQIDQNY--ISG-SLPKSFANLNKTRHFHMNNN-SISGQIPPELSRLPSLVHMLLD 210 (941)
Q Consensus 155 ~L~~L~Ls~N~--l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~ 210 (941)
+|++|+|++|. ++. .++..+..+++|+.|+|++| .+.+ ++..+..+++|++|+++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccc
Confidence 88899988886 221 11222345688888888887 3332 45555555555555543
No 385
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=8.2e-16 Score=170.26 Aligned_cols=234 Identities=13% Similarity=0.171 Sum_probs=134.1
Q ss_pred cceeeEEEecCCCCCccCCccccC-CCCCCEEEcccCCCC--CCCCCccCCccccceecccCccccCCCCcccCC-----
Q 002289 81 YLHLRELQLLNLNLSGNLSPEIGR-LSYLTILDFMWNKIS--GSIPKEIGNIKSLELLLLNGNELTGSLPEELGY----- 152 (941)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~l~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----- 152 (941)
..++++|.++++ +.+.--..+.. +++|+.|||++|+|. ...+. .++.++.+.+..|.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence 456788887753 22111112333 788999999999887 21111 1222333444444222 233444
Q ss_pred ---cCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcC----CCCCCccC---
Q 002289 153 ---LPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNL----TGYLPPEL--- 222 (941)
Q Consensus 153 ---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~--- 222 (941)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|.+|.+....+.+|.++.++..+.+..+.. .......|
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 55555555555 55544455555555555555555555544444555544444444433111 00000000
Q ss_pred -----------------------------------------------CCCCCCCEEeccCCcCCCCCcchhccCCCCCcE
Q 002289 223 -----------------------------------------------SELPKLLILQLDNNNFEGTTIPASYSNMSKLLK 255 (941)
Q Consensus 223 -----------------------------------------------~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~ 255 (941)
..+++|+.|+|++|+++. ..+.+|.++++|+.
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLK 254 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCE
Confidence 026788888888888875 45567888888888
Q ss_pred EEccCCCCcCCCCCCCCCCcccccccCCcC-EEEccCCcCCCCcchhhcCCcccceeecccccCccCCCccccccccc
Q 002289 256 LSLRNCSLQGPMPDLSRIPNLGYLLSLNIT-TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTL 332 (941)
Q Consensus 256 L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 332 (941)
|+|++| ++ .++.-.|....+|+ .|+|.+ .++.+.+.+|.++++|+.|++++|+++...+..|..+..|
T Consensus 255 l~l~~n-i~-------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 255 IKLPHN-LK-------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EECCTT-CC-------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred EECCcc-cc-------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 888877 54 33344455556677 888887 7776777888888888888888888885555566554433
No 386
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=8.2e-17 Score=193.25 Aligned_cols=283 Identities=12% Similarity=0.109 Sum_probs=139.5
Q ss_pred cceeeEEEecCC-CCCcc-CCccccCCCCCCEEEcccCCCCCCCCCccC----CccccceecccCcc--ccC-CCCcccC
Q 002289 81 YLHLRELQLLNL-NLSGN-LSPEIGRLSYLTILDFMWNKISGSIPKEIG----NIKSLELLLLNGNE--LTG-SLPEELG 151 (941)
Q Consensus 81 ~~~l~~L~L~~~-~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~Ls~N~--l~~-~~p~~~~ 151 (941)
..++++|+|.+| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|+|++|. ++. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 356788888777 44432 333344677888888887776654433332 45577777777775 110 0111122
Q ss_pred CcCccceeeccccc--------------------------------------------------ccc----cCCcccccc
Q 002289 152 YLPKLDRIQIDQNY--------------------------------------------------ISG----SLPKSFANL 177 (941)
Q Consensus 152 ~l~~L~~L~Ls~N~--------------------------------------------------l~~----~~p~~~~~l 177 (941)
++++|++|+|++|. +.. .++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 34666666666551 111 122223356
Q ss_pred cccceEecccccccccCc-hhccCCCccceeeccCCcCCCC-CCccCCCCCCCCEEec---------cCCcCCCCCcchh
Q 002289 178 NKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGY-LPPELSELPKLLILQL---------DNNNFEGTTIPAS 246 (941)
Q Consensus 178 ~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L---------s~N~l~~~~~p~~ 246 (941)
++|+.|+|++|.+++... ..+..+++|++|++++| ++.. ++.....+++|+.|+| +.|.+++..+...
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 788888888888764332 23456777888877776 3311 1111223556666655 2233332111111
Q ss_pred ccCCCCCcEEEccCCCCcCCCCC-CC-CCCcc----------------c-----------ccccCCcCEEEccCCcCCCC
Q 002289 247 YSNMSKLLKLSLRNCSLQGPMPD-LS-RIPNL----------------G-----------YLLSLNITTIKLSNNKLTGT 297 (941)
Q Consensus 247 ~~~l~~L~~L~Ls~N~l~~~~~~-~~-~l~~l----------------~-----------~l~~~~L~~L~Ls~N~l~~~ 297 (941)
..++++|+.|+++.|++++.... +. .++++ . .....+|+.|+|++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 22345555555555544321100 00 00000 0 11123456666655 45544
Q ss_pred cchhhcC-CcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCC--CC-CCCCCcEEEecCCCC
Q 002289 298 IPSNFSG-LPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG--SF-NIPPNVTVRLRGNPF 369 (941)
Q Consensus 298 ~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~--~~-~~~~~~~l~l~~Np~ 369 (941)
.+..+.. +++|+.|+|++|.+++..+..+.. ..++|+.|+|++|.++.... .. .++.++.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~----~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH----HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHh----cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4444444 566666666666665433322211 13455666666666643211 11 345566666666654
No 387
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.1e-15 Score=167.00 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=158.4
Q ss_pred CCCCCCEEEcccCCCCCCCCCccCC-ccccceecccCcccc--CCCCcccCCcCccceeecccccccccCCccccc----
Q 002289 104 RLSYLTILDFMWNKISGSIPKEIGN-IKSLELLLLNGNELT--GSLPEELGYLPKLDRIQIDQNYISGSLPKSFAN---- 176 (941)
Q Consensus 104 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---- 176 (941)
.+.+|+.|.++++ +...--..+.. +++|++|||++|++. ...+. .++.++.+.+..|. +.+..|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccc
Confidence 3778999999875 22111122333 788999999999998 22222 33335666666664 33456777
Q ss_pred ----ccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcC----CCCCcchhcc
Q 002289 177 ----LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNF----EGTTIPASYS 248 (941)
Q Consensus 177 ----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~~p~~~~ 248 (941)
+++|+.|+|.+ +++...+.+|.++++|+.|++++|.+....+.+|.++.++..+.+..+.. .. .....|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~-i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR-WEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT-TTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc-ccccccc
Confidence 99999999999 88877778899999999999999999978888999998888887766321 11 0111121
Q ss_pred --------------------------------------------------CCCCCcEEEccCCCCcCCCCCCCCCCcccc
Q 002289 249 --------------------------------------------------NMSKLLKLSLRNCSLQGPMPDLSRIPNLGY 278 (941)
Q Consensus 249 --------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~ 278 (941)
.+++|+.|+|++|+++. ++...|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------I~~~aF 246 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-------IPDFTF 246 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-------ECTTTT
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-------ecHhhh
Confidence 25677777777777763 333344
Q ss_pred cccCCcCEEEccCCcCCCCcchhhcCCcccc-eeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--C
Q 002289 279 LLSLNITTIKLSNNKLTGTIPSNFSGLPRLQ-RLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--N 355 (941)
Q Consensus 279 l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~ 355 (941)
....+|+.|+|.+| ++.+.+.+|.++++|+ .|++.+ +++...+..|..+ .+|+.|+|++|+++.|+... .
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c-----~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC-----DNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC-----TTEEEEEECSSCCCEECTTTTCT
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC-----ccCCEEEeCCCccCccchhhhcC
Confidence 45556677777777 6666677777777777 777777 5653444555443 34557777777777775443 4
Q ss_pred CCCCcEEE
Q 002289 356 IPPNVTVR 363 (941)
Q Consensus 356 ~~~~~~l~ 363 (941)
.+.+++++
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 45555554
No 388
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=3.4e-15 Score=149.28 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=83.0
Q ss_pred cccCCCCCCEEEcccCCCCCCCCCccCCcc-ccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccc
Q 002289 101 EIGRLSYLTILDFMWNKISGSIPKEIGNIK-SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNK 179 (941)
Q Consensus 101 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 179 (941)
.+.++.+|++|+|++|+++ .+|. +..+. +|++|+|++|.+++. ..|..+++|++|+|++|.|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4556677777777777777 3443 44444 777777777777754 56667777777777777777554455566667
Q ss_pred cceEecccccccccCch--hccCCCccceeeccCCcCCCCCCcc----CCCCCCCCEEeccCCcCC
Q 002289 180 TRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPPE----LSELPKLLILQLDNNNFE 239 (941)
Q Consensus 180 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~ 239 (941)
|++|+|++|+|+ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777665 3444 5556666666666666665 33332 555556666666555543
No 389
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=4.4e-17 Score=166.49 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCCCEEEcccCCCCCCCCC------ccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccc
Q 002289 106 SYLTILDFMWNKISGSIPK------EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNK 179 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 179 (941)
..++.++++.|.+.|.+|. .|..+++|++|+|++|++++ +| .+.++++|++|+|++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 44555555555555555553 33 4455555555555555555 34444444555
Q ss_pred cceEecccccccccCchhccCCCccceeeccCCcCCCCCC-ccCCCCCCCCEEeccCCcCCC
Q 002289 180 TRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 180 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
|++|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|+|++|.+++
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 5555555555553 22 34445555555555555553211 244555555555555555543
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=5.4e-17 Score=165.79 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=124.7
Q ss_pred eeEEEecCCCCCccCCc------cccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccc
Q 002289 84 LRELQLLNLNLSGNLSP------EIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLD 157 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 157 (941)
++.+++.++++.|.+|. .+..+++|++|+|++|++++ +| .+.++++|++|+|++|+++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 45555666666666665 89999999999999999996 77 8999999999999999999 7888888899999
Q ss_pred eeecccccccccCCcccccccccceEecccccccccCc-hhccCCCccceeeccCCcCCCCCCcc----------CCCCC
Q 002289 158 RIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPE----------LSELP 226 (941)
Q Consensus 158 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~ 226 (941)
+|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +..++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 99999999996 45 68999999999999999995433 47899999999999999998776543 56677
Q ss_pred CCCEEeccCCcCC
Q 002289 227 KLLILQLDNNNFE 239 (941)
Q Consensus 227 ~L~~L~Ls~N~l~ 239 (941)
+|+.|| +|.++
T Consensus 175 ~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 175 NLKKLD--GMPVD 185 (198)
T ss_dssp SCSEEC--CGGGT
T ss_pred CcEEEC--CcccC
Confidence 777765 55554
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=4.6e-15 Score=148.30 Aligned_cols=133 Identities=23% Similarity=0.271 Sum_probs=104.4
Q ss_pred ccCCccccceecccCccccCCCCcccCCc-CccceeecccccccccCCcccccccccceEecccccccccCchhccCCCc
Q 002289 125 EIGNIKSLELLLLNGNELTGSLPEELGYL-PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPS 203 (941)
Q Consensus 125 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 203 (941)
.+.++.+|++|+|++|+++ .+|. +..+ ++|++|+|++|.|++. ..|..+++|++|+|++|+|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4667888999999999998 4555 4444 4899999999998865 67888888888899888888665566688888
Q ss_pred cceeeccCCcCCCCCCc--cCCCCCCCCEEeccCCcCCCCCcchh----ccCCCCCcEEEccCCCCc
Q 002289 204 LVHMLLDNNNLTGYLPP--ELSELPKLLILQLDNNNFEGTTIPAS----YSNMSKLLKLSLRNCSLQ 264 (941)
Q Consensus 204 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~p~~----~~~l~~L~~L~Ls~N~l~ 264 (941)
|++|+|++|+|+ .+|. .+..+++|+.|+|++|.++. +|.. +..+++|+.|++++|.++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4554 67888888888888888874 4553 778888888888887764
No 392
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.5e-13 Score=152.72 Aligned_cols=264 Identities=9% Similarity=0.088 Sum_probs=199.3
Q ss_pred eeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeeccc
Q 002289 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 163 (941)
++++.+.+ +++..-..+|.+ .+|+.++|.+| ++.+-..+|.+. +|+.+.|.+ .++..-+..|.++++|+.++|++
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 44555544 455444456776 47999999877 765667788884 799999986 67767778899999999999999
Q ss_pred ccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCc
Q 002289 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (941)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 243 (941)
|.++.+....|. ..+|+.+.|.+| ++.....+|.++++|+.+++.+| ++.....+|.+ .+|+.+.|. |.++. ..
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~-I~ 263 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN-IA 263 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE-EC
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE-EC
Confidence 999976667777 589999999855 77667788999999999999875 66566677887 789999994 55654 45
Q ss_pred chhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCC
Q 002289 244 PASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIP 323 (941)
Q Consensus 244 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (941)
..+|.++++|+.+++.+|.+... ....++.-.|....+|+.++|. |.++.+-..+|.++++|+.|.|.+| ++..-+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~--~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDD--PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCC--TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred hhHhhCCCCCCEEEeCCccccCC--cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 67899999999999999887511 1223455566677788999999 4588788899999999999999665 663334
Q ss_pred cccccccccCccccceEEccCCCCCCCCCCC--CCC-CCcEEEecCCC
Q 002289 324 SSIWQSRTLNATETFILDFQNNNLTNISGSF--NIP-PNVTVRLRGNP 368 (941)
Q Consensus 324 ~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~-~~~~l~l~~Np 368 (941)
..|.. . +|+.|++++|.+..++... .++ .+.+|++..|.
T Consensus 340 ~aF~~-----~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 340 SAFNN-----T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TSSSS-----S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HhCCC-----C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 45533 2 5779999999999886554 343 46788887765
No 393
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1.6e-12 Score=147.33 Aligned_cols=240 Identities=13% Similarity=0.117 Sum_probs=181.1
Q ss_pred CCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccccceE
Q 002289 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (941)
Q Consensus 104 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 183 (941)
....++.+.+.+ .++.+-..+|.+. +|+.+.|.+| ++..-..+|.+. +|+.+.|.+ .++.+.+.+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 357788888875 4554566788875 7999999877 665666778874 799999986 7776778889999999999
Q ss_pred ecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCC
Q 002289 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (941)
Q Consensus 184 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l 263 (941)
+|.+|+++.....+|. ..+|+.+.|.+| ++.....+|.++++|+.++|..| ++. ....+|.+ .+|+.+.|. |.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-cccccccc-CCccEEEeC-CCc
Confidence 9999999865556666 689999999854 77677788999999999999876 443 45567777 789999994 444
Q ss_pred cCCCCCCCCCCcccccccCCcCEEEccCCcCC-----CCcchhhcCCcccceeecccccCccCCCcccccccccCccccc
Q 002289 264 QGPMPDLSRIPNLGYLLSLNITTIKLSNNKLT-----GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETF 338 (941)
Q Consensus 264 ~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~ 338 (941)
+ .++...|....+|+.++|.+|.+. .+.+.+|.++++|+.++|. |.++..-...|..+ .+|+
T Consensus 260 ~-------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c-----~~L~ 326 (401)
T 4fdw_A 260 T-------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN-----RKVT 326 (401)
T ss_dssp C-------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC-----CSCC
T ss_pred c-------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC-----CCcc
Confidence 4 444556667778899999988876 5668889999999999998 44763334444433 4566
Q ss_pred eEEccCCCCCCCCCCC--CCCCCcEEEecCCCC
Q 002289 339 ILDFQNNNLTNISGSF--NIPPNVTVRLRGNPF 369 (941)
Q Consensus 339 ~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~ 369 (941)
.++|..| ++.|.... .. .+..|.+.+|..
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 8999554 88885444 45 788999988854
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2e-13 Score=135.50 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=51.1
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 164 (941)
+.|++++++|+. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455666665553 34333 245555555555555444555555555555555555555444444444555555555555
Q ss_pred cccccCCcccccccccceEeccccccc
Q 002289 165 YISGSLPKSFANLNKTRHFHMNNNSIS 191 (941)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (941)
+|++..+..|..+++|++|+|++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444443444444444444444444443
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.6e-13 Score=134.67 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=38.3
Q ss_pred CccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEec
Q 002289 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQL 233 (941)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 233 (941)
++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 33444444444444333444444444444444444444333333444444444444444444433334444444444444
Q ss_pred cCCcCC
Q 002289 234 DNNNFE 239 (941)
Q Consensus 234 s~N~l~ 239 (941)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444444
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.6e-13 Score=134.18 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=56.4
Q ss_pred eEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccc
Q 002289 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (941)
Q Consensus 85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 164 (941)
+.+++++++++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 3444443 55666666666666555555555666666666666655444444455555555555555
Q ss_pred cccccCCcccccccccceEeccccccc
Q 002289 165 YISGSLPKSFANLNKTRHFHMNNNSIS 191 (941)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (941)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555443434444555555555554444
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=5.4e-13 Score=132.92 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=36.0
Q ss_pred ccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEecc
Q 002289 155 KLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLD 234 (941)
Q Consensus 155 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 234 (941)
+|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 33333444443333333333334444444444444443333333444444444444444443333334444444445444
Q ss_pred CCcCC
Q 002289 235 NNNFE 239 (941)
Q Consensus 235 ~N~l~ 239 (941)
+|.+.
T Consensus 114 ~N~~~ 118 (174)
T 2r9u_A 114 NNPWD 118 (174)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 44444
No 398
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=7.7e-13 Score=147.36 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=94.5
Q ss_pred CCC-CCCCCceEecCCCCCCCcceeeEEEecCCCCCccCCccccCCCCCCEEEccc-CCCCCCCCCccCCccccceeccc
Q 002289 61 DPC-TSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMW-NKISGSIPKEIGNIKSLELLLLN 138 (941)
Q Consensus 61 ~~c-~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls 138 (941)
+.| .|.|.+|.|.+. |+|++ +|. |..+++|++|+|++ |+|++..+..|++|++|++|+|+
T Consensus 3 ~~c~~C~~~~v~~~~~----------------n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~ 64 (347)
T 2ifg_A 3 DACCPHGSSGLRCTRD----------------GALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64 (347)
T ss_dssp SSSCCSSSSCEECCSS----------------CCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC
T ss_pred CcCccccCCEEEcCCC----------------CCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC
Confidence 346 677877777431 15664 777 99999999999996 99998888889999999999999
Q ss_pred CccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccccccc
Q 002289 139 GNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG 192 (941)
Q Consensus 139 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 192 (941)
+|+|++..|..|.+|++|++|+|++|+|++..+..|..++ |+.|+|++|+|..
T Consensus 65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999988888999999999999999999977777777766 9999999998873
No 399
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=2.8e-14 Score=160.15 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=24.0
Q ss_pred CcCEEEccCCcCCCC----cchhhcCCcccceeecccccCccCCCccccc
Q 002289 283 NITTIKLSNNKLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 328 (941)
Q Consensus 283 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (941)
+|++|+|++|.|+.. +...+...++|+.|+|++|.|++.....+..
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 345555555555432 3334445566777777777666444344433
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.6e-13 Score=154.00 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCCEEEcccCCCCCCCCCccCCc-----cccceecccCccccCCCCccc-CCcCccceeecccccccccCCcccc----
Q 002289 106 SYLTILDFMWNKISGSIPKEIGNI-----KSLELLLLNGNELTGSLPEEL-GYLPKLDRIQIDQNYISGSLPKSFA---- 175 (941)
Q Consensus 106 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~---- 175 (941)
++|+.|+|++|.|+......+... ++|++|+|++|.++......+ ..+++|++|+|++|.|+......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666653222222221 456666666665543211111 2234555555555555433222221
Q ss_pred -cccccceEeccccccccc----CchhccCCCccceeeccCCcCC
Q 002289 176 -NLNKTRHFHMNNNSISGQ----IPPELSRLPSLVHMLLDNNNLT 215 (941)
Q Consensus 176 -~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 215 (941)
..++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 234455555555544321 1222233444444444444443
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.6e-11 Score=136.59 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=36.2
Q ss_pred EEcccC-CCCCCCCCccCCccccceecccC-ccccCCCCcccCCcCccceeecccccccccCCcccccccccceEecccc
Q 002289 111 LDFMWN-KISGSIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (941)
Q Consensus 111 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (941)
++++++ +|+ .+|. |..+++|++|+|++ |+|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 2444 44444455555543 4444444444444444444444444444444444444444444444444
Q ss_pred ccc
Q 002289 189 SIS 191 (941)
Q Consensus 189 ~l~ 191 (941)
+|+
T Consensus 91 ~l~ 93 (347)
T 2ifg_A 91 ALE 93 (347)
T ss_dssp CCS
T ss_pred ccc
Confidence 444
No 402
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.20 E-value=3.2e-11 Score=128.58 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=112.5
Q ss_pred HhcCCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeeccccCCcEEEEEe
Q 002289 607 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 607 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~LV~e 685 (941)
..+.|++...++.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++...+..++|||
T Consensus 12 ~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e 90 (263)
T 3tm0_A 12 LIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS 90 (263)
T ss_dssp HHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred HhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence 3456877888888889999999864 6889999987532223346889999999984 6778899999988889999999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEA-------------------------------------- 727 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------------------- 727 (941)
|++|.+|.+.+.. ......++.+++++|..||+..
T Consensus 91 ~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (263)
T 3tm0_A 91 EADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP 163 (263)
T ss_dssp CCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred ecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999876411 1123467889999999999811
Q ss_pred ------------------CCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 728 ------------------DPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 728 ------------------~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
.+.++|+|+++.||+++++..+.|+||+.+.
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1348999999999999876666799999775
No 403
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.04 E-value=3.2e-10 Score=120.31 Aligned_cols=128 Identities=21% Similarity=0.149 Sum_probs=97.6
Q ss_pred eccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc--eeeeeeccccCCcEEEEEecCCCCCHHHH
Q 002289 618 GQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEEGEQMLVYEFMSNGTLRDQ 695 (941)
Q Consensus 618 G~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~~~~~~~~~~~LV~e~~~~gsL~~~ 695 (941)
+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+.+.+ +.+++++....+..++||||++|.+|.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-- 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-- 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--
Confidence 456669999998777888999997653 2346789999999986544 456888888778899999999998884
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHHHHHhhcCC------------------------------------------------
Q 002289 696 LSAKSKEPLGFAMRLSIALGSSRGILYLHTEA------------------------------------------------ 727 (941)
Q Consensus 696 l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------------------------------------------------ 727 (941)
... .+ ...++.++++.|..||+..
T Consensus 104 ~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (264)
T 1nd4_A 104 SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK 175 (264)
T ss_dssp TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHH
T ss_pred cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHH
Confidence 211 11 2256777888888888643
Q ss_pred -------CCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 728 -------DPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 728 -------~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
...++|+|++|.||+++++..+.|+|||.+.
T Consensus 176 ~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 176 ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999887667799999875
No 404
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=1e-08 Score=115.96 Aligned_cols=269 Identities=12% Similarity=0.034 Sum_probs=149.2
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCC---------------
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSL--------------- 146 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------------- 146 (941)
.+|+++.+.+ +++..-..+|.++++|+.++|.++ ++.+-..+|.++.+|+.+.+..+- ...-
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecccccccccC
Confidence 3577777764 455444457888888888888754 543445677777777777665441 1111
Q ss_pred -------CcccCCcCccceeecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCC
Q 002289 147 -------PEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP 219 (941)
Q Consensus 147 -------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 219 (941)
...|.++++|+.+.|.++. ..+....|.++.+|+.+.+..| ++.....+|.++..|+.+.+.++... +.
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~ 223 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LG 223 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--EC
T ss_pred ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--ee
Confidence 2335555555555555433 2244445555555665555544 33233344555555555555443322 11
Q ss_pred ccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCC-------------CCCcccccccCCcCE
Q 002289 220 PELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLS-------------RIPNLGYLLSLNITT 286 (941)
Q Consensus 220 ~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------~l~~l~~l~~~~L~~ 286 (941)
..+....+|+.+.+..+. +. .....|.++.+|+.+.+..+..+-....+. .++...|....+|+.
T Consensus 224 ~~~~~~~~l~~i~ip~~~-~~-i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSF-TE-LGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTE 301 (394)
T ss_dssp TTTTTTCCCCEEEECTTC-CE-ECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCE
T ss_pred hhhcccCCCceEEECCCc-ee-cccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccc
Confidence 222223344444443221 11 223456666777777776554321111111 122334555667888
Q ss_pred EEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEe
Q 002289 287 IKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRL 364 (941)
Q Consensus 287 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l 364 (941)
+.+.++ ++.+-..+|.++.+|+.++|.++ ++..-...|..+ .+|+.++|..| ++.|.... ....++.+.|
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC-----TSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC-----TTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC-----CCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 888765 66666788889999999988654 653334444433 45667888766 88775444 4567777877
Q ss_pred cCC
Q 002289 365 RGN 367 (941)
Q Consensus 365 ~~N 367 (941)
..|
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 654
No 405
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.90 E-value=3e-09 Score=118.85 Aligned_cols=141 Identities=22% Similarity=0.316 Sum_probs=105.5
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEec--cCC-chhhHhHHHHHHHHHhcC--CCceeeeeeccccC---CcEEEEEe
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQ--EGS-LQGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEE---GEQMLVYE 685 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~---~~~~LV~e 685 (941)
.+.|+.|.++.||+....+ ..+++|+.. ... ......+.+|+++++.+. +..+.++++++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 4678999999999998754 578888775 322 123457889999999997 45578888888766 45899999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEA-------------------------------------- 727 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------------------- 727 (941)
|++|..+.+.. ...++...+..++.++++.|+.||+..
T Consensus 122 ~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 122 FVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp CCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred ecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 99987775421 123677888889999999999999731
Q ss_pred -----------------CCCeEeccCCCCcEEEcCCCc--EEEeeeccccc
Q 002289 728 -----------------DPPVFHRDIKASNILLDHKFT--AKVADFGLSRL 759 (941)
Q Consensus 728 -----------------~~~ivH~DLkp~NILl~~~~~--~kl~DFGla~~ 759 (941)
.+.++|||+++.||+++.++. +.|+||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 245999999999999997753 68999998864
No 406
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=5.8e-10 Score=123.98 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=43.6
Q ss_pred CCCCCCEEeccCCcCCCCCcchhcc---CCCCCcEEEccCCCCcCCCCCCCCC-CcccccccCCcCEEEccCCcCCCCcc
Q 002289 224 ELPKLLILQLDNNNFEGTTIPASYS---NMSKLLKLSLRNCSLQGPMPDLSRI-PNLGYLLSLNITTIKLSNNKLTGTIP 299 (941)
Q Consensus 224 ~l~~L~~L~Ls~N~l~~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l-~~l~~l~~~~L~~L~Ls~N~l~~~~p 299 (941)
.+++|++|+|++|.+.. ..+..+. .+++|+.|+|+.|.|++.-.. .+ ..+ -.+.+|+.|+|++|.|+...-
T Consensus 250 ~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--~L~~~L--~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGAR--LLLDHV--DKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp TCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--HHHTTH--HHHTTCSEEECCSBBCCHHHH
T ss_pred CCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHH--HHHhhc--ccCCcceEEECCCCcCCHHHH
Confidence 35667777777666653 1222222 456777777777776532100 00 000 122456778888887764443
Q ss_pred hhhcC-Ccccceeeccccc
Q 002289 300 SNFSG-LPRLQRLFIANNS 317 (941)
Q Consensus 300 ~~~~~-l~~L~~L~Ls~N~ 317 (941)
..+.. + ...+++++|+
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33332 2 2334555544
No 407
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.80 E-value=6.1e-09 Score=113.39 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=121.1
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCc--eeeeeeccccCC---cEEEEEecC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRN--LVSLVGYCDEEG---EQMLVYEFM 687 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--Iv~l~~~~~~~~---~~~LV~e~~ 687 (941)
.+.++.|....||+.. ..+++|+.... .....+.+|.++++.+. +.. +.+++......+ ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999863 45888886532 33467889999998883 332 345555543333 348899999
Q ss_pred CCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 002289 688 SNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE----------------------------------------- 726 (941)
Q Consensus 688 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~----------------------------------------- 726 (941)
+|.++.+.... .++..++..++.++++.++.||+.
T Consensus 99 ~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (304)
T 3sg8_A 99 KGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVD 174 (304)
T ss_dssp CCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHH
Confidence 99888653321 256667777888888888888851
Q ss_pred --------------CCCCeEeccCCCCcEEEcC--CCcEEEeeeccccccCCCC-CCCcc------ccccccccccCCCc
Q 002289 727 --------------ADPPVFHRDIKASNILLDH--KFTAKVADFGLSRLAPVPD-IEGIV------PAHVSTVVKGTPGY 783 (941)
Q Consensus 727 --------------~~~~ivH~DLkp~NILl~~--~~~~kl~DFGla~~~~~~~-~~~~~------~~~~~~~~~gt~~y 783 (941)
..+.++|+|+++.||++++ ...+.|+||+.+..-.... ..... ............++
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~ 254 (304)
T 3sg8_A 175 DFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKH 254 (304)
T ss_dssp HHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCC
Confidence 1234899999999999998 4568899999986532110 00000 00000000000111
Q ss_pred cc-ccccccCCCCchhHhHHHHHHHHHHHhCCCCC
Q 002289 784 LD-PEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI 817 (941)
Q Consensus 784 ~a-PE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf 817 (941)
.. |+..... ....+.|++|.++|++.+|..+|
T Consensus 255 ~~~~~~~~r~--~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 255 KDIPTVLEKY--RMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp SCHHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHH--HHHHHHHHHHHHHHHHHcCCHHH
Confidence 22 2222111 12368999999999999997766
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=1.9e-09 Score=119.74 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCCCCcEEEccCCCCcCCCCC-CCCCCcccccccCCcCEEEccCCcCCCCc----chhhcCCcccceeecccccCccCCC
Q 002289 249 NMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLLSLNITTIKLSNNKLTGTI----PSNFSGLPRLQRLFIANNSLSGSIP 323 (941)
Q Consensus 249 ~l~~L~~L~Ls~N~l~~~~~~-~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (941)
.+++|++|+|++|.+....+. +... ..+++|++|+|+.|.|.+.. +..+..+++|+.|+|++|.|+...-
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a-----~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLES-----DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHC-----SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhC-----ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 478999999999988642211 0000 12356899999999998753 3334567899999999998874332
Q ss_pred cccccccccCccccceEEccCCC
Q 002289 324 SSIWQSRTLNATETFILDFQNNN 346 (941)
Q Consensus 324 ~~~~~l~~l~~~~L~~L~Ls~N~ 346 (941)
..+... + ...+++++|+
T Consensus 325 ~~l~~a--l----g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKS--L----PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHH--C----CSEEECCSBC
T ss_pred HHHHHH--c----CCEEEecCCc
Confidence 222220 1 2468999887
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=7.8e-11 Score=124.40 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=32.5
Q ss_pred cCCccccce--ecccCcccc---CCCCcccCCcCccceeecccccccc--cCCcccccccccceEecccccccc
Q 002289 126 IGNIKSLEL--LLLNGNELT---GSLPEELGYLPKLDRIQIDQNYISG--SLPKSFANLNKTRHFHMNNNSISG 192 (941)
Q Consensus 126 ~~~l~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~ 192 (941)
|...+.|+. ++++.|+.. +.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 444555555 555666332 1111122345556666666666554 233444455555555555555553
No 410
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.68 E-value=6.1e-07 Score=101.34 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=162.0
Q ss_pred eeEEEecCCCCCccCCccccCCCCCCEEEcccCC---CCCCCCCccCCccccceecccCccccCCCCcccCCcCccceee
Q 002289 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK---ISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (941)
Q Consensus 84 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 160 (941)
|+++.+.+ +++..-..+|.+.++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 66666654 3554444577888888888887764 55444567778888888877655 4435556778888888888
Q ss_pred cccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCC
Q 002289 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (941)
Q Consensus 161 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 240 (941)
+..+ +..+....|..+.+|+.+.+.++ ++..-..+|.. .+|+.+.+..+-.. ....+|.++.+|+......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 8644 34355667778888888887655 33233344433 46777776554332 444556666666655443332210
Q ss_pred ---------------------------C--------CcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcC
Q 002289 241 ---------------------------T--------TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNIT 285 (941)
Q Consensus 241 ---------------------------~--------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~ 285 (941)
. ....+|.++.+|+.+.+.++.. .+....|....+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--------~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--------SIGTGAFMNCPALQ 291 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--------EECTTTTTTCTTCC
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--------eecCcccccccccc
Confidence 0 1123566667777776654432 23334445556678
Q ss_pred EEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEE
Q 002289 286 TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVR 363 (941)
Q Consensus 286 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~ 363 (941)
.+.+. +.++.+...+|.++.+|+.++|.++ ++..-...|..+ .+|+.+.|.. +++.|.... ....++.+.
T Consensus 292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C-----~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC-----EQLERIAIPS-SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC-----TTCCEEEECT-TCCBCCGGGGTTCTTCCEEE
T ss_pred cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC-----CCCCEEEECc-ccCEEhHhHhhCCCCCCEEE
Confidence 88875 4566566778888888888888754 542233344333 4556788854 477775443 567788888
Q ss_pred ecCCCC
Q 002289 364 LRGNPF 369 (941)
Q Consensus 364 l~~Np~ 369 (941)
+.+|.-
T Consensus 364 ~~~~~~ 369 (394)
T 4gt6_A 364 YSGSRS 369 (394)
T ss_dssp ESSCHH
T ss_pred ECCcee
Confidence 887753
No 411
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=4e-07 Score=102.82 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=143.2
Q ss_pred ccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecccccccccCCcccccccc
Q 002289 100 PEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNK 179 (941)
Q Consensus 100 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 179 (941)
.+|.++++|+.+.+.++... +-...|.++.+|+.+++..| ++......|.++..|+.+.+..+... +.+.+....+
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 35667777777777655322 44566777777777777666 44345566777777777777665432 2233344456
Q ss_pred cceEecccccccccCchhccCCCccceeeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEcc
Q 002289 180 TRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLR 259 (941)
Q Consensus 180 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls 259 (941)
|+.+.+.++ ++......|..+..|+.+.+..+... .....|..+..|+.+.+..+.+. ...|..+.+|+.+.+.
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEEC
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec----cccccccccccccccc
Confidence 666666543 23233456677778888887766544 55567777778877777665542 3467778888888876
Q ss_pred CCCCcCCCCCCCCCCcccccccCCcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccce
Q 002289 260 NCSLQGPMPDLSRIPNLGYLLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFI 339 (941)
Q Consensus 260 ~N~l~~~~~~~~~l~~l~~l~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~ 339 (941)
.+ ++ .+....|....+|+.++|.++ ++.+-..+|.++.+|+.++|..| ++..-...|..+ .+|+.
T Consensus 306 ~~-i~-------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C-----~~L~~ 370 (394)
T 4fs7_A 306 DS-VK-------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC-----INLKK 370 (394)
T ss_dssp TT-CC-------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC-----TTCCE
T ss_pred cc-cc-------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC-----CCCCE
Confidence 54 33 344445566667788888654 77666788888889999888776 653334445443 44567
Q ss_pred EEccCCCCCCC
Q 002289 340 LDFQNNNLTNI 350 (941)
Q Consensus 340 L~Ls~N~l~~~ 350 (941)
++|..| ++.+
T Consensus 371 i~lp~~-~~~~ 380 (394)
T 4fs7_A 371 VELPKR-LEQY 380 (394)
T ss_dssp EEEEGG-GGGG
T ss_pred EEECCC-CEEh
Confidence 777643 4443
No 412
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=1.6e-06 Score=97.84 Aligned_cols=243 Identities=11% Similarity=0.178 Sum_probs=137.3
Q ss_pred ceeeEEEecCCC---CCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccce
Q 002289 82 LHLRELQLLNLN---LSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDR 158 (941)
Q Consensus 82 ~~l~~L~L~~~~---l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 158 (941)
.+|+++.+.++. ++..-..+|....+|+.+.+..+ ++.+-...|.++.+|+.+.|..+. .......|.++.+|+.
T Consensus 87 ~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~ 164 (394)
T 4gt6_A 87 TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHT 164 (394)
T ss_dssp TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCE
T ss_pred ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccccccc
Confidence 457888887653 44333456777777887777654 443445677778888888876543 3255566777777777
Q ss_pred eecccccccccCCcccccccccceEecccccccccCchhccCCCccceeeccC---------------------------
Q 002289 159 IQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN--------------------------- 211 (941)
Q Consensus 159 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~--------------------------- 211 (941)
+.+..+ ++.+...+|.+ .+|+.+.+..+-.. ....+|..+.+|+......
T Consensus 165 i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 4gt6_A 165 VTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQ 241 (394)
T ss_dssp EECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTT
T ss_pred ccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccccc
Confidence 777654 33333444433 45555555433222 2223333333333332211
Q ss_pred ---------CcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccC
Q 002289 212 ---------NNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSL 282 (941)
Q Consensus 212 ---------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~ 282 (941)
+.++.....+|.++.+|+.+.+..+..+ ....+|.++++|+.+.+.. .++ .++...|....
T Consensus 242 ~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~-~i~-------~I~~~aF~~c~ 311 (394)
T 4gt6_A 242 REDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS-RIT-------ELPESVFAGCI 311 (394)
T ss_dssp CCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCC-------EECTTTTTTCT
T ss_pred cccceEEcCCcceEcccceeeecccccEEecccccce--ecCcccccccccccccCCC-ccc-------ccCceeecCCC
Confidence 1122223345677777777777665443 3455677777777777752 232 34444555556
Q ss_pred CcCEEEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCC
Q 002289 283 NITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNN 346 (941)
Q Consensus 283 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~ 346 (941)
+|+.++|..+ ++.+-..+|.++.+|+.+.|..+ ++..-...|.. ..+|+.+++.+|.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~-----C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN-----CTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT-----CTTCCEEEESSCH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC-----CCCCCEEEECCce
Confidence 6777777654 55555677777777777777544 54222233333 3445567777664
No 413
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.47 E-value=6.1e-07 Score=96.47 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=60.8
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCC---ceeeeeeccccCCcEEEEEecCCCC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCDEEGEQMLVYEFMSNG 690 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~~~~~~~LV~e~~~~g 690 (941)
.+.|+.|.++.||++...+|+.++||+...........+.+|++.|+.+.+. .+.+++++. ..++||||++++
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g~ 95 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDER 95 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCC
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecccC
Confidence 5689999999999999888999999997543333346789999999999765 577777763 468999999998
Q ss_pred CH
Q 002289 691 TL 692 (941)
Q Consensus 691 sL 692 (941)
++
T Consensus 96 ~~ 97 (288)
T 3d1u_A 96 PP 97 (288)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 414
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.45 E-value=7.9e-07 Score=97.35 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=99.5
Q ss_pred CCCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCC----CceeeeeeccccCCcEEEEEe
Q 002289 610 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH----RNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 610 ~y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~nIv~l~~~~~~~~~~~LV~e 685 (941)
.+...+.++.|....||+. |..+++|+... ......+.+|.++++.+.+ -.+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~--~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR--DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc--HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5556788999999999998 56788887643 2223568899999988865 123455554 56789999
Q ss_pred cCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCC-------------------------------------
Q 002289 686 FMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEAD------------------------------------- 728 (941)
Q Consensus 686 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~------------------------------------- 728 (941)
|++|.++.+... ..++...+..++.++++.++.||+...
T Consensus 108 ~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (320)
T 3r70_A 108 YIKGERITYEQY----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTD 183 (320)
T ss_dssp CCCCBCCCHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred ecCCcccccccc----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccccc
Confidence 999988864321 124555666777777777777774322
Q ss_pred -----------------------CCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 729 -----------------------PPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 729 -----------------------~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
+.++|+|++|.||+++.+..+.|+||+.+..
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 184 EMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred cchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999976679999999864
No 415
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=3.8e-08 Score=103.79 Aligned_cols=121 Identities=25% Similarity=0.266 Sum_probs=70.0
Q ss_pred eecccCccccCCCCc-ccCCcCccce--eeccccccc---ccCCcccccccccceEecccccccc--cCchhccCCCccc
Q 002289 134 LLLLNGNELTGSLPE-ELGYLPKLDR--IQIDQNYIS---GSLPKSFANLNKTRHFHMNNNSISG--QIPPELSRLPSLV 205 (941)
Q Consensus 134 ~L~Ls~N~l~~~~p~-~~~~l~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~ 205 (941)
.|...+|..++.++- .|...+.|+. ++++.|... +.++....++++|+.|+|++|+|++ .+|..+..+++|+
T Consensus 120 ~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~ 199 (267)
T 3rw6_A 120 IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 199 (267)
T ss_dssp HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCC
T ss_pred HHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCC
Confidence 344445544443332 2555566666 677777543 2222223456777888888888776 3445566677777
Q ss_pred eeeccCCcCCCCCCccCCCCC--CCCEEeccCCcCCCCCcc-------hhccCCCCCcEEE
Q 002289 206 HMLLDNNNLTGYLPPELSELP--KLLILQLDNNNFEGTTIP-------ASYSNMSKLLKLS 257 (941)
Q Consensus 206 ~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~p-------~~~~~l~~L~~L~ 257 (941)
.|+|++|+|++. ..+..+. +|+.|+|++|.+.+ .+| ..+..+++|+.||
T Consensus 200 ~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 200 ILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD-TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG-GCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc-ccCcchhHHHHHHHHCcccCeEC
Confidence 777777777754 2233333 67777777777664 232 2355566666554
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=4.2e-08 Score=98.29 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=34.8
Q ss_pred CccccCCCCCCEEEcccC-CCCCC----CCCccCCccccceecccCccccCC----CCcccCCcCccceeeccccccc
Q 002289 99 SPEIGRLSYLTILDFMWN-KISGS----IPKEIGNIKSLELLLLNGNELTGS----LPEELGYLPKLDRIQIDQNYIS 167 (941)
Q Consensus 99 ~~~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 167 (941)
...+...+.|++|+|++| .|... +...+...++|++|+|++|.|+.. +...+...++|++|+|++|.|+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344556667777777776 66521 223344445566666666665421 1222233344555555555544
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=8.1e-08 Score=96.23 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=16.9
Q ss_pred CccceeeccCCcCCCC----CCccCCCCCCCCEEec--cCCcCC
Q 002289 202 PSLVHMLLDNNNLTGY----LPPELSELPKLLILQL--DNNNFE 239 (941)
Q Consensus 202 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~ 239 (941)
++|++|+|++|.|+.. +...+...++|++|+| ++|.|.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4444444444444421 2233344445555555 445543
No 418
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.27 E-value=7e-07 Score=83.56 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=46.2
Q ss_pred eeecccccCc-cCCCcccccccccCccccceEEccCCCCCCCCCCC--CCCCCcEEEecCCCCccCCCcccccCC
Q 002289 310 RLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTNAEQFCGS 381 (941)
Q Consensus 310 ~L~Ls~N~l~-~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~l~~Np~~c~c~~~~~~~~ 381 (941)
.++.+++.|+ ..+|..+ ..+|+.|+|++|+|+.++... .++.++.|+|.+|||.|||.+.+|-..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w 79 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred EEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHH
Confidence 4555555554 3455443 235667788888888876555 577889999999999999999777653
No 419
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.27 E-value=3.3e-06 Score=89.79 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=97.3
Q ss_pred eeeccCcE-EEEEEEeC-CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeeccccCCcEEEEEecCCCCCH
Q 002289 616 QIGQGGYG-KVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYEFMSNGTL 692 (941)
Q Consensus 616 ~lG~G~fg-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~LV~e~~~~gsL 692 (941)
.+..|..| .||+.... ++..+++|+.... ....+.+|...|+.+. +--+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45556655 68988764 5678999986532 3456888999998884 33467888888888899999999999888
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCC---------------------------------------------
Q 002289 693 RDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEA--------------------------------------------- 727 (941)
Q Consensus 693 ~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--------------------------------------------- 727 (941)
.+...... .....+..++++.|.-||+..
T Consensus 108 ~~~~~~~~------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (272)
T 4gkh_A 108 FQVLEEYP------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWK 181 (272)
T ss_dssp HHHHHHCG------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHH
T ss_pred cccccCCH------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHH
Confidence 77653321 122345666667777777511
Q ss_pred ----------CCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 728 ----------DPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 728 ----------~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
.+.++|+|+.+.||++++++.+-|+||+.+.
T Consensus 182 ~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 182 EMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1137899999999999988777899999875
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.27 E-value=5.8e-06 Score=89.79 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=92.4
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCC---ceeeeeeccc-cCCcEEEEEecCCC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCD-EEGEQMLVYEFMSN 689 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~-~~~~~~LV~e~~~~ 689 (941)
.+.++.|....||+. |..+++|+... ......+.+|.++|+.+.+. .+.+++.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456888998999987 56688888532 23346789999999999653 3556666663 45667899999999
Q ss_pred CCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcC-------------------------------------------
Q 002289 690 GTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTE------------------------------------------- 726 (941)
Q Consensus 690 gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------------------------------------------- 726 (941)
.++.+..-. .++...+..++.++++.|+.||+.
T Consensus 98 ~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 173 (306)
T 3tdw_A 98 QILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLT 173 (306)
T ss_dssp EECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred eECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 888663211 123334444444444444444432
Q ss_pred --------------CCCCeEeccCCCCcEEEcC---CCc-EEEeeeccccc
Q 002289 727 --------------ADPPVFHRDIKASNILLDH---KFT-AKVADFGLSRL 759 (941)
Q Consensus 727 --------------~~~~ivH~DLkp~NILl~~---~~~-~kl~DFGla~~ 759 (941)
..+.++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 174 LRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2234799999999999987 455 58999998764
No 421
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=3.5e-05 Score=86.24 Aligned_cols=77 Identities=6% Similarity=-0.004 Sum_probs=43.0
Q ss_pred eeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeecc
Q 002289 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (941)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 162 (941)
+++++.+.. +++..-..+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++..-...|.+ .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 466666653 444333446777777887777644 554445666665 5666666543 33233344444 356666665
Q ss_pred cc
Q 002289 163 QN 164 (941)
Q Consensus 163 ~N 164 (941)
.+
T Consensus 122 ~~ 123 (379)
T 4h09_A 122 GA 123 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 422
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=7.1e-05 Score=83.69 Aligned_cols=244 Identities=11% Similarity=0.066 Sum_probs=128.7
Q ss_pred ceeeEEEecCCCCCccCCccccCCCCCCEEEcccCCCCCCCCCccCCccccceecccCccccCCCCcccCCcCccceeec
Q 002289 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (941)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 161 (941)
.+|++++|.+ +++..-..+|.+. +|+.+.+..+ ++.+-..+|.. .+|+.+.|.++-.. .-...|.+. +|+.+.+
T Consensus 69 ~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~ 142 (379)
T 4h09_A 69 YNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVI 142 (379)
T ss_dssp TTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEE
T ss_pred CCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcccc-ccccccccc-eeeeeec
Confidence 4688888865 3553333456665 6777776543 44233445544 36777777654222 222333332 3333333
Q ss_pred ccccccccCCcccccccccceEeccccc-----------------------------------ccccCchhccCCCccce
Q 002289 162 DQNYISGSLPKSFANLNKTRHFHMNNNS-----------------------------------ISGQIPPELSRLPSLVH 206 (941)
Q Consensus 162 s~N~l~~~~p~~~~~l~~L~~L~L~~N~-----------------------------------l~~~~p~~~~~l~~L~~ 206 (941)
..+ ++.+....|..+.+|+.+.+..+. ........+....+|+.
T Consensus 143 ~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~ 221 (379)
T 4h09_A 143 PKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKK 221 (379)
T ss_dssp CTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSE
T ss_pred cce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccce
Confidence 322 222233334444444333332211 11122334555667777
Q ss_pred eeccCCcCCCCCCccCCCCCCCCEEeccCCcCCCCCcchhccCCCCCcEEEccCCCCcCCCCCCCCCCcccccccCCcCE
Q 002289 207 MLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLLSLNITT 286 (941)
Q Consensus 207 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~l~~~~L~~ 286 (941)
+.+..+ +......+|.++.+|+.+.+..+ ++. ....+|.++.+|+.+.+..+ ++ .++...|....+|+.
T Consensus 222 i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~~-i~-------~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 222 ITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYAK-VK-------TVPYLLCSGCSNLTK 290 (379)
T ss_dssp EECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECCC-CS-------EECTTTTTTCTTCCE
T ss_pred eeeccc-eeEEccccccCCccceEEEcCCC-ccE-eCccccceeehhcccccccc-ce-------ecccccccccccccc
Confidence 777544 33344556777777777777665 433 34456777777777777543 22 333444555566777
Q ss_pred EEccCCcCCCCcchhhcCCcccceeecccccCccCCCcccccccccCccccceEEccCCCCCCC
Q 002289 287 IKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 350 (941)
Q Consensus 287 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~L~~L~Ls~N~l~~~ 350 (941)
+.+.++.++.+-..+|.++.+|+.+.|.++ ++..-...|..+. +|+.+.+..+ ++.|
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-----~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-----ALSTISYPKS-ITLI 347 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-----TCCCCCCCTT-CCEE
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-----CCCEEEECCc-cCEE
Confidence 777777777666777777777777777644 4422233443333 3344555432 5555
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.10 E-value=4.5e-06 Score=92.70 Aligned_cols=80 Identities=4% Similarity=-0.013 Sum_probs=56.1
Q ss_pred ccee-eccCcEEEEEEEeC-------CCcEEEEEEeccCC---chhhHhHHHHHHHHHhcC-C--CceeeeeeccccC--
Q 002289 614 STQI-GQGGYGKVYKGILP-------DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLH-H--RNLVSLVGYCDEE-- 677 (941)
Q Consensus 614 ~~~l-G~G~fg~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~nIv~l~~~~~~~-- 677 (941)
.+.| +.|....+|+.... +++.+++|+..... ......+.+|+++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 78888999988754 26788999865422 111246788999888884 3 3567788877654
Q ss_pred -CcEEEEEecCCCCCHH
Q 002289 678 -GEQMLVYEFMSNGTLR 693 (941)
Q Consensus 678 -~~~~LV~e~~~~gsL~ 693 (941)
+..++||||++|.++.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 4578999999886654
No 424
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.05 E-value=9.4e-06 Score=90.29 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=89.1
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc--eeeeeeccccC-CcEEEEEecCCCC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEE-GEQMLVYEFMSNG 690 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~~~~~~~-~~~~LV~e~~~~g 690 (941)
.+.++.|....+|+... +++.+++|+.... ..+.+|..+++.+.... +.++++++... +..++||||++|.
T Consensus 46 i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G~ 119 (362)
T 3ovc_A 46 LMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGV 119 (362)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCSE
T ss_pred EEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCCC
Confidence 56789999999999876 5788999987542 25888999999886533 45677766544 6789999999876
Q ss_pred CHHHH------------------HhhcCCC---C---c---------cHHHH---------------------HHHHHHH
Q 002289 691 TLRDQ------------------LSAKSKE---P---L---------GFAMR---------------------LSIALGS 716 (941)
Q Consensus 691 sL~~~------------------l~~~~~~---~---l---------~~~~~---------------------~~i~~~i 716 (941)
++.+. ||..... . + .|... ......+
T Consensus 120 ~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (362)
T 3ovc_A 120 TLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQAL 199 (362)
T ss_dssp ETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchHHH
Confidence 55321 1111100 0 0 01100 0111112
Q ss_pred HHHHHHhhcC-CCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 717 SRGILYLHTE-ADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 717 a~gL~yLH~~-~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
...++++... ..+.++|+|+++.||++++++.+.|+||+.+..
T Consensus 200 ~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 200 DELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 2222333221 124589999999999998877788999998864
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.84 E-value=5.6e-05 Score=85.19 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=49.6
Q ss_pred cceeeccCcEEEEEEEeC-CCcEEEEEEeccCCc-------hhhHhHHHHHHHHHhcCC--C-ceeeeeeccccCCcEEE
Q 002289 614 STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------QGEKEFLTEIQFLSRLHH--R-NLVSLVGYCDEEGEQML 682 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-nIv~l~~~~~~~~~~~L 682 (941)
.+.||.|.++.||++... +++.|+||....... ....++..|.++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999864 468899997653211 123456789998888742 3 34455544 3345689
Q ss_pred EEecCCCC
Q 002289 683 VYEFMSNG 690 (941)
Q Consensus 683 V~e~~~~g 690 (941)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.73 E-value=0.00012 Score=80.35 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=79.4
Q ss_pred ceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCC--Cceeeeeec------cccCCcEEEEEec
Q 002289 615 TQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH--RNLVSLVGY------CDEEGEQMLVYEF 686 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~nIv~l~~~------~~~~~~~~LV~e~ 686 (941)
+.|+.|..+.||+....+| .+++|+.... ...+..|.++++.+.. -.+.+++.. ....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677889999987655 4889988752 2234455666655531 133444431 1245678999999
Q ss_pred CCCCCHH--------------HHHhhc--C---CC-------CccHHHH-------------------------------
Q 002289 687 MSNGTLR--------------DQLSAK--S---KE-------PLGFAMR------------------------------- 709 (941)
Q Consensus 687 ~~~gsL~--------------~~l~~~--~---~~-------~l~~~~~------------------------------- 709 (941)
++|.++. ..+|.. . .. ...|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 112211 0 00 0112110
Q ss_pred HHHHHHHHHHHHHhhc----------CCCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 710 LSIALGSSRGILYLHT----------EADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 710 ~~i~~~ia~gL~yLH~----------~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
..+...+.+++++|+. .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111223345666653 023449999999999999888899999999875
No 427
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.73 E-value=0.0001 Score=79.08 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCccceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCC---CceeeeeeccccCCcEEEEEecC
Q 002289 611 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH---RNLVSLVGYCDEEGEQMLVYEFM 687 (941)
Q Consensus 611 y~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~nIv~l~~~~~~~~~~~LV~e~~ 687 (941)
....+.+|.|..+.||+.+..||+.|++|+...........|..|.+.|+.+.- -.+.+++++. ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence 334678999999999999999999999998765444444568899999988842 2344555542 347899999
Q ss_pred CCCCH
Q 002289 688 SNGTL 692 (941)
Q Consensus 688 ~~gsL 692 (941)
+++..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.60 E-value=0.00021 Score=77.38 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=91.4
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC---CCceeeeeeccccCCcEEEEEecCCCC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCDEEGEQMLVYEFMSNG 690 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~~~~~LV~e~~~~g 690 (941)
.+.|+.|....+|+... ++..+++|+.... ....+..|.+.|+.+. ...+.+++++....+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 46789999999999886 4678889987642 2456889999888884 356788888887778899999999987
Q ss_pred CHH--------H---HHhhcCC-C-------------------CccHHHHH---HHH----------------HHHHH-H
Q 002289 691 TLR--------D---QLSAKSK-E-------------------PLGFAMRL---SIA----------------LGSSR-G 719 (941)
Q Consensus 691 sL~--------~---~l~~~~~-~-------------------~l~~~~~~---~i~----------------~~ia~-g 719 (941)
.+. + .||.... . .-+|.... ++. ..+.. .
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 652 1 2233211 0 01343221 011 11111 1
Q ss_pred HHHhhc-CCCCCeEeccCCCCcEEEcCCCcEEEeeec
Q 002289 720 ILYLHT-EADPPVFHRDIKASNILLDHKFTAKVADFG 755 (941)
Q Consensus 720 L~yLH~-~~~~~ivH~DLkp~NILl~~~~~~kl~DFG 755 (941)
...|.. ...+.++|+|+.+.|++++.++ +.|.|+.
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 234432 2345699999999999999887 8899974
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=3.7e-05 Score=75.15 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=14.0
Q ss_pred CCCEEEcccCCCCCCCCCccCCccccceecccCc
Q 002289 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (941)
Q Consensus 107 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 140 (941)
+|+.|||+++.|+..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3455555554444222222333444444444443
No 430
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=4.4e-05 Score=74.65 Aligned_cols=34 Identities=6% Similarity=0.070 Sum_probs=15.6
Q ss_pred ccceecccCccccCCCCcccCCcCccceeecccc
Q 002289 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (941)
Q Consensus 131 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 164 (941)
+|++|||+++.++..--..+.++++|++|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544332233344444444444444
No 431
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00057 Score=77.48 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=44.8
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccC------C-c--hhhHhHHHHHHHHH-hcCCCceeeeeeccccCCcEEEE
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEG------S-L--QGEKEFLTEIQFLS-RLHHRNLVSLVGYCDEEGEQMLV 683 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~------~-~--~~~~~~~~E~~~l~-~l~h~nIv~l~~~~~~~~~~~LV 683 (941)
.+.||.|..+.||++.. +++.++||..... . . .....+..|+..+. ......+.+++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 46789999999999965 5678999943210 1 0 02223344443322 22234566676665 4667999
Q ss_pred EecC-CC
Q 002289 684 YEFM-SN 689 (941)
Q Consensus 684 ~e~~-~~ 689 (941)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 432
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.20 E-value=0.0014 Score=71.74 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred ceeeccCcEE-EEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCC--CceeeeeeccccCCcEEEEEecCCCCC
Q 002289 615 TQIGQGGYGK-VYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQMLVYEFMSNGT 691 (941)
Q Consensus 615 ~~lG~G~fg~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~~~~~~LV~e~~~~gs 691 (941)
+.|+.|+... +|+....+|+.+++|...... ...+..|+++++.+.. -.+.+++.+....+ ++|||++.+.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4565555444 667765446777787654321 1345667777777642 23456666644333 78999997766
Q ss_pred HHHHHhhc---------------------C---CCCccHHHHH--------HH------------HHHHHHHHHHhh---
Q 002289 692 LRDQLSAK---------------------S---KEPLGFAMRL--------SI------------ALGSSRGILYLH--- 724 (941)
Q Consensus 692 L~~~l~~~---------------------~---~~~l~~~~~~--------~i------------~~~ia~gL~yLH--- 724 (941)
+.+++... . ...++..... .+ ...+.+.++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 65443211 0 0111111100 00 001111222221
Q ss_pred cCCCCCeEeccCCCCcEEEcCC----CcEEEeeeccccc
Q 002289 725 TEADPPVFHRDIKASNILLDHK----FTAKVADFGLSRL 759 (941)
Q Consensus 725 ~~~~~~ivH~DLkp~NILl~~~----~~~kl~DFGla~~ 759 (941)
......++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1123349999999999999875 6899999998864
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.07 E-value=0.0025 Score=69.14 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=87.1
Q ss_pred cchHHHHHHhcCCCc-----cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc--eeeee
Q 002289 599 FTYGEMALATNNFNS-----STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLV 671 (941)
Q Consensus 599 ~~~~~~~~~~~~y~~-----~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~ 671 (941)
++.+++.....+|.+ .+.|+.|....+|+....+| .+++|+.... .....+..|+++++.+.... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 344455555555654 24566788889999987666 5788987652 12235667888887774222 33444
Q ss_pred ecc------ccCCcEEEEEecCCCCCHHH--------------HHhhc----CCC-----C-ccHHHHHH----------
Q 002289 672 GYC------DEEGEQMLVYEFMSNGTLRD--------------QLSAK----SKE-----P-LGFAMRLS---------- 711 (941)
Q Consensus 672 ~~~------~~~~~~~LV~e~~~~gsL~~--------------~l~~~----~~~-----~-l~~~~~~~---------- 711 (941)
... ...+..++||+|++|..+.. .+|.. ... . ..|.....
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 321 12356789999998865311 12211 000 0 11222110
Q ss_pred --HHHHHHHHHHHhhcC----CCCCeEeccCCCCcEEEcCCCcEEEeeecccc
Q 002289 712 --IALGSSRGILYLHTE----ADPPVFHRDIKASNILLDHKFTAKVADFGLSR 758 (941)
Q Consensus 712 --i~~~ia~gL~yLH~~----~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~ 758 (941)
+...+.+.++++++. ....++|+|+.+.||+++++..+.|+||+.+.
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 001133445555421 12348999999999999987666899999775
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.85 E-value=0.008 Score=65.29 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred ceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCC--ceeeeeec-----cccCCcEEEEEecC
Q 002289 615 TQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR--NLVSLVGY-----CDEEGEQMLVYEFM 687 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--nIv~l~~~-----~~~~~~~~LV~e~~ 687 (941)
..++ |....||+....+|+.+++|+...... ....+..|..+++.+... .+.+++.. ....+..++||||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 3466 777899998877787899999864321 234677788888877422 24445443 11245668899999
Q ss_pred CCCCHH-----H------H---Hhhc----C---CCCccHHHH----------------------HHHHHHHHHHHHHhh
Q 002289 688 SNGTLR-----D------Q---LSAK----S---KEPLGFAMR----------------------LSIALGSSRGILYLH 724 (941)
Q Consensus 688 ~~gsL~-----~------~---l~~~----~---~~~l~~~~~----------------------~~i~~~ia~gL~yLH 724 (941)
+|.++. . . +|.. . ....++... ...+..++..++-+-
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 1 1 1210 0 111222110 011111122222221
Q ss_pred c-CCCCCeEeccCCCCcEEEcCCCcEEEeeeccccc
Q 002289 725 T-EADPPVFHRDIKASNILLDHKFTAKVADFGLSRL 759 (941)
Q Consensus 725 ~-~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~ 759 (941)
. .....++|+|+++.||+++ + .+.|+||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 1 1223488999999999999 4 899999988753
No 435
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00041 Score=69.08 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=18.4
Q ss_pred CccccceecccCc-cccCC----CCcccCCcCccceeeccccccc
Q 002289 128 NIKSLELLLLNGN-ELTGS----LPEELGYLPKLDRIQIDQNYIS 167 (941)
Q Consensus 128 ~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 167 (941)
+-+.|++|+|++| +|... +-..+..-+.|+.|+|++|+|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 3445666666653 44321 1222333444555555555544
No 436
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00015 Score=72.31 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=49.5
Q ss_pred cccCCCCCCEEEcccC-CCCC----CCCCccCCccccceecccCccccCC----CCcccCCcCccceeecccccccccC-
Q 002289 101 EIGRLSYLTILDFMWN-KISG----SIPKEIGNIKSLELLLLNGNELTGS----LPEELGYLPKLDRIQIDQNYISGSL- 170 (941)
Q Consensus 101 ~l~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~- 170 (941)
.+.+-+.|++|+|++| +|.. .+-+.+..-+.|+.|+|++|+|+.. +...+..-+.|++|+|++|.|....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455667888888775 6652 1234455567788888888888732 2223334466777777777766332
Q ss_pred ---CcccccccccceEeccc
Q 002289 171 ---PKSFANLNKTRHFHMNN 187 (941)
Q Consensus 171 ---p~~~~~l~~L~~L~L~~ 187 (941)
-+.+..-+.|++|+|++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 12233334455555543
No 437
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.81 E-value=0.0027 Score=68.30 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=45.2
Q ss_pred cceeeccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCce-eeeeeccccCCcEEEEEecC-CCCC
Q 002289 614 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVYEFM-SNGT 691 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nI-v~l~~~~~~~~~~~LV~e~~-~~gs 691 (941)
.+.|+.|....+|+. ..+++|+....... .....+|+.+++.+....+ .++++++. +.-++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~~--~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVDP--ATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECT--TTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEEC--CCCEEEEeecCCCcc
Confidence 578999999999998 45888887643211 1233568887777742222 45665543 3346899999 6654
Q ss_pred H
Q 002289 692 L 692 (941)
Q Consensus 692 L 692 (941)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.74 E-value=0.0017 Score=73.65 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=50.4
Q ss_pred cceeeccCcEEEEEEEeCC--------CcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCce-eeeeeccccCCcEEEEE
Q 002289 614 STQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nI-v~l~~~~~~~~~~~LV~ 684 (941)
.+.|+.|....+|+....+ ++.+++|+..... ....+.+|..+++.+...++ .++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 4568888889999998653 5789999884321 11355689998888853333 567776643 3899
Q ss_pred ecCCCCCH
Q 002289 685 EFMSNGTL 692 (941)
Q Consensus 685 e~~~~gsL 692 (941)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99986443
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.66 E-value=0.0042 Score=68.96 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=81.4
Q ss_pred ceeeccCcEEEEEEEeC--------CCcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeeccccCCcEEEEEe
Q 002289 615 TQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYE 685 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~LV~e 685 (941)
+.|..|-...+|+.... +++.+++|+.... ......+.+|.++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 46777777889998864 3578999986432 223345678999988884 3223567777654 29999
Q ss_pred cCCCCCHHH--------------H---HhhcC---CCCc--cHHHHHHHHHHHHH-------------------HHHHh-
Q 002289 686 FMSNGTLRD--------------Q---LSAKS---KEPL--GFAMRLSIALGSSR-------------------GILYL- 723 (941)
Q Consensus 686 ~~~~gsL~~--------------~---l~~~~---~~~l--~~~~~~~i~~~ia~-------------------gL~yL- 723 (941)
|++|.+|.. . +|... .... -+.++.++..++.. .++.|
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 998765521 1 11111 1111 23444444433321 22333
Q ss_pred ---hcC-CCCCeEeccCCCCcEEEcCC----CcEEEeeecccc
Q 002289 724 ---HTE-ADPPVFHRDIKASNILLDHK----FTAKVADFGLSR 758 (941)
Q Consensus 724 ---H~~-~~~~ivH~DLkp~NILl~~~----~~~kl~DFGla~ 758 (941)
... ....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 222 22348899999999999876 789999999875
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.43 E-value=0.0068 Score=69.11 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=48.5
Q ss_pred cceeeccCcEEEEEEEeCC-CcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCce-eeeeeccccCCcEEEEEecCCCCC
Q 002289 614 STQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVYEFMSNGT 691 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~nI-v~l~~~~~~~~~~~LV~e~~~~gs 691 (941)
.+.|+.|-...+|+....+ +..+++|+..... ...-...+|..+++.+...++ .++++++.. .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFFTN----GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEeeCCcc
Confidence 4578888889999998765 5788899875422 111122578999998865444 567777632 35999998754
Q ss_pred H
Q 002289 692 L 692 (941)
Q Consensus 692 L 692 (941)
|
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 4
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.41 E-value=0.0033 Score=58.38 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEcccCCCC-CCCCCccCCccccceecccCccccCCCCcccCCcCccceeeccccc
Q 002289 110 ILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY 165 (941)
Q Consensus 110 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 165 (941)
.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555554 23342221 234444444444443333334444444444444443
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.15 E-value=0.0079 Score=66.65 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=44.1
Q ss_pred ceeeccCcEEEEEEEeCC---------CcEEEEEEeccCCchhhHhHHHHHHHHHhcCCCc-eeeeeeccccCCcEEEEE
Q 002289 615 TQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN-LVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-Iv~l~~~~~~~~~~~LV~ 684 (941)
..|+.|....+|+....+ ++.+++|+..... ........|.++++.+...+ +.++++... -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DELYNTISEFEVYKTMSKYKIAPQLLNTFN----GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GGTSCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cceecHHHHHHHHHHHHhcCCCCceEEecC----CcEEE
Confidence 467778888999988654 2688899875432 11113467888888874333 346665442 26899
Q ss_pred ecCCCCCH
Q 002289 685 EFMSNGTL 692 (941)
Q Consensus 685 e~~~~gsL 692 (941)
||++|.++
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99987543
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.00 E-value=0.042 Score=60.02 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=43.3
Q ss_pred ccCcEEEEEEEeCCCcEEEEEEeccCCchhhHhHHHHHHHHHhcC---CCceeeeeecc------ccCCcEEEEEecCCC
Q 002289 619 QGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYC------DEEGEQMLVYEFMSN 689 (941)
Q Consensus 619 ~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~------~~~~~~~LV~e~~~~ 689 (941)
.|....||+....+| .+++|+...... ..|+.+++.+. -+.+.+.+... ...+..++||+|++|
T Consensus 33 ~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G 105 (339)
T 3i1a_A 33 ADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHA 105 (339)
T ss_dssp SCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCC
T ss_pred CccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCC
Confidence 333678999987777 899998765432 34556565552 22245554331 234678999999998
Q ss_pred CCH
Q 002289 690 GTL 692 (941)
Q Consensus 690 gsL 692 (941)
..+
T Consensus 106 ~~~ 108 (339)
T 3i1a_A 106 PNG 108 (339)
T ss_dssp CBT
T ss_pred CcC
Confidence 765
No 444
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=95.34 E-value=0.002 Score=70.58 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=40.6
Q ss_pred ccCCCCCCCHHHHHHHHHHhH--hhCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 864 QDETDARPSMSEVMRELESIW--NMMPESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 864 ~~~p~~RPs~~~v~~~L~~~~--~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
-..|-...+..+++..+..-. .......+++.+||.+||+.||++|||++|+|+||||+..
T Consensus 221 G~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 283 (350)
T 4b9d_A 221 LKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283 (350)
T ss_dssp SSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcC
Confidence 444555556665554433211 0111223445789999999999999999999999999754
No 445
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=95.06 E-value=0.003 Score=66.81 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=43.9
Q ss_pred ccCCCCCCCHHHHHHHHHHhHhhCCC-CCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 864 QDETDARPSMSEVMRELESIWNMMPE-SDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 864 ~~~p~~RPs~~~v~~~L~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
...|-...+..+..+.+......++. ......+||.+||..||++|||++|+++||||+....
T Consensus 203 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~~ 266 (279)
T 3fdn_A 203 GKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS 266 (279)
T ss_dssp SSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHCS
T ss_pred CCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCcc
Confidence 34455555666666655544333332 2334567999999999999999999999999976544
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.80 E-value=0.16 Score=50.78 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcEEEcCCCcEEEeeeccccccCCCCCCCcc
Q 002289 690 GTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNILLDHKFTAKVADFGLSRLAPVPDIEGIV 769 (941)
Q Consensus 690 gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~ 769 (941)
-||.+.|...+ .++++.++|.++.|.+.+|.-+-....+ ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 33 vSL~eIL~~~~-~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 33 LSLEEILRLYN-QPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred ccHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc-----------
Confidence 47999997654 5799999999999999988776221111 1223446899999999998764 2111
Q ss_pred ccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCC
Q 002289 770 PAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQP 816 (941)
Q Consensus 770 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~P 816 (941)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 --------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 --------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -----------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122567888763 3456788999999999998864333
No 447
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.77 E-value=0.19 Score=55.85 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=81.6
Q ss_pred ceeeccCcEEEEEEEeCC--------CcEEEEEEeccCCch------------h------hHhHHHHHHHHHhcC-CCce
Q 002289 615 TQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQ------------G------EKEFLTEIQFLSRLH-HRNL 667 (941)
Q Consensus 615 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~------------~------~~~~~~E~~~l~~l~-h~nI 667 (941)
+.|..|-...+|+....+ ++.|.+++.-..... . .+....|.++++.+. +--.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667778899988653 367888886442110 0 112335888888884 4345
Q ss_pred eeeeeccccCCcEEEEEecCCCCCHHH--------------H---Hhhc----CCCCc-cHHHHHHHHHHHH--------
Q 002289 668 VSLVGYCDEEGEQMLVYEFMSNGTLRD--------------Q---LSAK----SKEPL-GFAMRLSIALGSS-------- 717 (941)
Q Consensus 668 v~l~~~~~~~~~~~LV~e~~~~gsL~~--------------~---l~~~----~~~~l-~~~~~~~i~~~ia-------- 717 (941)
.++++++... +|+||++|-+|.. . +|.. ...+. -+....++..++.
T Consensus 138 Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 5777777532 8999998755421 1 1111 11111 2223333332221
Q ss_pred --------------HHH----HHhhcCC-CCCeEeccCCCCcEEEcCC------CcEEEeeecccc
Q 002289 718 --------------RGI----LYLHTEA-DPPVFHRDIKASNILLDHK------FTAKVADFGLSR 758 (941)
Q Consensus 718 --------------~gL----~yLH~~~-~~~ivH~DLkp~NILl~~~------~~~kl~DFGla~ 758 (941)
+-+ ++|...+ ...++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 2233222 2348899999999999876 789999999875
No 448
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.19 E-value=0.16 Score=57.03 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=48.0
Q ss_pred cceeeccCcEEEEEEEeCC--------CcEEEEEEeccCCchhhHhHHHHHHHHHhcC-CCceeeeeeccccCCcEEEEE
Q 002289 614 STQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVY 684 (941)
Q Consensus 614 ~~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~LV~ 684 (941)
.+.+..|-...+|+....+ ++.+++|+..... ...-...+|.++++.+. +.-..++++.+. -++||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3467777788899988653 5789999865432 11123457888888874 322345665443 27899
Q ss_pred ecCCCCCH
Q 002289 685 EFMSNGTL 692 (941)
Q Consensus 685 e~~~~gsL 692 (941)
||++|.+|
T Consensus 150 efI~G~~l 157 (424)
T 3mes_A 150 EFIDGEPL 157 (424)
T ss_dssp ECCCSEEC
T ss_pred EEeCCccC
Confidence 99998654
No 449
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=93.89 E-value=0.0044 Score=65.34 Aligned_cols=62 Identities=6% Similarity=0.106 Sum_probs=41.7
Q ss_pred ccCCCCCCCHHHHHHHHHHhHhhCCC-CCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 864 QDETDARPSMSEVMRELESIWNMMPE-SDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 864 ~~~p~~RPs~~~v~~~L~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
...|-...+..++.+.+..-....+. .+....+++.+||..||++|||++|+++||||+...
T Consensus 207 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~~ 269 (276)
T 2h6d_A 207 GTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDL 269 (276)
T ss_dssp SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTTC
T ss_pred CCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccCc
Confidence 34454445555555544432222222 234456799999999999999999999999998753
No 450
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.44 E-value=0.032 Score=38.87 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=20.9
Q ss_pred CCCCCccceeeehhHHHHHHHHHHHHHHHH
Q 002289 539 NSGISKAALAGIILGAIAGAVTISAIVSLL 568 (941)
Q Consensus 539 ~~~~~~~~~~~ii~g~~~~~~~~~~~~~~~ 568 (941)
+++.+..+++||++|++++++.+.+++.++
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 345677788999999888777666554433
No 451
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=93.43 E-value=0.012 Score=62.22 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=5.5
Q ss_pred cCCCCCCCHHHHH
Q 002289 865 DETDARPSMSEVM 877 (941)
Q Consensus 865 ~~p~~RPs~~~v~ 877 (941)
..|-..++..+..
T Consensus 209 ~~pf~~~~~~~~~ 221 (284)
T 2vgo_A 209 MPPFDSPSHTETH 221 (284)
T ss_dssp SCTTCCSSHHHHH
T ss_pred CCCCCCCCHhHHH
Confidence 3444444444443
No 452
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=93.02 E-value=0.012 Score=62.81 Aligned_cols=63 Identities=5% Similarity=0.044 Sum_probs=42.0
Q ss_pred ccCCCCCCCHHHHHHHHHHhHhhCC-CCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 864 QDETDARPSMSEVMRELESIWNMMP-ESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 864 ~~~p~~RPs~~~v~~~L~~~~~~~~-~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
...|-...+..++.+.+.......+ ...+...++|.+||..||++|||++|+++||||.....
T Consensus 209 g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~ 272 (305)
T 2wtk_C 209 GLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHP 272 (305)
T ss_dssp SSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCC
Confidence 3445444455555554443221111 22334568999999999999999999999999976544
No 453
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=92.58 E-value=0.0061 Score=65.27 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 848 PSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 848 ~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
...++..+.+++.+|++.+|.+||++.+++++
T Consensus 226 ~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 226 WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 38899999999999999999999999999865
No 454
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=92.47 E-value=0.019 Score=60.59 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 891 DTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 891 ~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.....+++.+||..||++|||++|+++||||+.
T Consensus 239 ~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 271 (283)
T 3bhy_A 239 SELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA 271 (283)
T ss_dssp CHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence 344578999999999999999999999999975
No 455
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=91.78 E-value=0.01 Score=62.90 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 892 TKTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 892 ~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
....++|.+||..||++|||++|+|+||||+..
T Consensus 251 ~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~ 283 (287)
T 2wei_A 251 DDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY 283 (287)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence 345679999999999999999999999999753
No 456
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=91.30 E-value=0.056 Score=57.92 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 893 KTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 893 ~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
...+++.+||..||++|||++|+++||||.+...
T Consensus 254 ~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~~ 287 (314)
T 3com_A 254 NFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKG 287 (314)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCCC
T ss_pred HHHHHHHHHccCChhhCcCHHHHHhCHHHhcCCc
Confidence 4467999999999999999999999999987554
No 457
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=90.89 E-value=0.03 Score=59.32 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.7
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 855 FIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 855 l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
+.+++.+||+.+|++||++.+++++
T Consensus 255 ~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 255 AKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp HHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHccCChhhCCCHHHHhcC
Confidence 6799999999999999999998753
No 458
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=90.81 E-value=0.015 Score=62.40 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 891 DTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 891 ~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
.....++|.+||..||++|||++|+++||||+....
T Consensus 257 ~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~~ 292 (312)
T 2iwi_A 257 SPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAE 292 (312)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC---
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHhcChhhcCchh
Confidence 344567999999999999999999999999987543
No 459
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=90.40 E-value=0.022 Score=62.21 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCcccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 893 KTPEFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 893 ~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
...+|+.+||..||++|||++|+|+||||+..
T Consensus 249 ~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~ 280 (343)
T 3dbq_A 249 DLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 280 (343)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSC
T ss_pred HHHHHHHHHcCCChhHCCCHHHHHhCcccccc
Confidence 35679999999999999999999999999753
No 460
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=90.21 E-value=0.062 Score=56.39 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=41.8
Q ss_pred ccCCCCCCCHHHHHHHHHHhHh-hCC-CCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 864 QDETDARPSMSEVMRELESIWN-MMP-ESDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 864 ~~~p~~RPs~~~v~~~L~~~~~-~~~-~~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
...|-...+..++.+.+..-.. ..+ .......+++.+||..||++|||++|+++|+|+.....
T Consensus 212 g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~ 276 (279)
T 2w5a_A 212 LMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHHH 276 (279)
T ss_dssp SSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGS
T ss_pred CCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhcc
Confidence 3445444455555554443211 111 22344567999999999999999999999999987543
No 461
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=89.63 E-value=0.026 Score=60.56 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.5
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 896 EFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 896 dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
+++.+||..||++|||++|+|+||||+....
T Consensus 271 ~li~~~l~~dp~~Rps~~ell~h~~~~~~~~ 301 (313)
T 3cek_A 271 DVLKCCLKRDPKQRISIPELLAHPYVQIQTH 301 (313)
T ss_dssp HHHHHHTCSSTTTSCCHHHHHTSHHHHCC--
T ss_pred HHHHHHccCCcccCcCHHHHhcCccccCCCC
Confidence 5666778888888888888899999876543
No 462
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=89.36 E-value=0.054 Score=57.74 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCcccccccCCCCCCCCCCCccCCCCCCCCCCCCC
Q 002289 893 KTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVSG 927 (941)
Q Consensus 893 ~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~~ 927 (941)
...+++.+||..||++|||++|+++||||......
T Consensus 246 ~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~ 280 (303)
T 3a7i_A 246 PLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKK 280 (303)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHHCCC
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhhChhhhcCCCc
Confidence 34679999999999999999999999999765543
No 463
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=89.19 E-value=0.025 Score=61.59 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=25.7
Q ss_pred cccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 895 PEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 895 ~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
.+++.+||..||++|||++|+++||||+....
T Consensus 288 ~~li~~~l~~dp~~Rps~~ell~hp~f~~~~~ 319 (340)
T 3an0_A 288 VDFTSQCLKKNSKERPTYPELMQHPFFTLHES 319 (340)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHTTSHHHHHHTT
T ss_pred HHHHHHHccCCcccCcCHHHHhcCcCcccccc
Confidence 45777788888899999999999999965444
No 464
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=88.85 E-value=1.3 Score=49.09 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.7
Q ss_pred eEeccCCCCcEEE------cCCCcEEEeeeccccc
Q 002289 731 VFHRDIKASNILL------DHKFTAKVADFGLSRL 759 (941)
Q Consensus 731 ivH~DLkp~NILl------~~~~~~kl~DFGla~~ 759 (941)
++|+|+.+.||++ +++..++++||..|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5699999999999 4567899999998753
No 465
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=88.81 E-value=0.035 Score=61.91 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.2
Q ss_pred CCcccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 893 KTPEFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 893 ~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
.+.+||.+||..||++|||++|+|+||||+...
T Consensus 296 ~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~ 328 (390)
T 2zmd_A 296 DLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT 328 (390)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred HHHHHHHHHcccChhhCCCHHHHhhCcCccccC
Confidence 356799999999999999999999999997543
No 466
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=88.42 E-value=0.028 Score=60.68 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=24.6
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCCCCCC
Q 002289 896 EFINSEHTSKEETPPSSSSMLKHPYVSSDV 925 (941)
Q Consensus 896 dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~ 925 (941)
+||.+||..||++|||++|+++||||....
T Consensus 265 ~li~~~l~~dp~~Rps~~~ll~hp~~~~~~ 294 (326)
T 2x7f_A 265 SFIESCLVKNHSQRPATEQLMKHPFIRDQP 294 (326)
T ss_dssp HHHHHHCCSSGGGSCCHHHHHTSHHHHCCT
T ss_pred HHHHHHhccChhhCCCHHHHhhChHHhhCc
Confidence 567778888888889999999999997643
No 467
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=88.29 E-value=0.04 Score=59.14 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=23.7
Q ss_pred cccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 895 PEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 895 ~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+++.+||..||++|||++|+++||||+.
T Consensus 261 ~~li~~~l~~dp~~Rps~~~ll~h~~~~~ 289 (318)
T 2dyl_A 261 QSFVKDCLTKDHRKRPKYNKLLEHSFIKR 289 (318)
T ss_dssp HHHHHHHTCSCTTTSCCHHHHTTSHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhhCHHHHh
Confidence 35677778888888889999999999864
No 468
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.21 E-value=0.45 Score=34.23 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=2.8
Q ss_pred ehhHHHH
Q 002289 550 IILGAIA 556 (941)
Q Consensus 550 ii~g~~~ 556 (941)
|+.|++.
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 3344443
No 469
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=87.53 E-value=0.028 Score=60.77 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=23.9
Q ss_pred cccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 895 PEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 895 ~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.+++.+||..||++|||++|+++||||..
T Consensus 263 ~~li~~~l~~dp~~Rps~~ell~hp~~~~ 291 (327)
T 3aln_A 263 INFVNLCLTKDESKRPKYKELLKHPFILM 291 (327)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred HHHHHHHhhCChhhCcCHHHHHhChHHHH
Confidence 35777788888888999999999999854
No 470
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.15 E-value=0.37 Score=34.57 Aligned_cols=7 Identities=43% Similarity=0.629 Sum_probs=2.9
Q ss_pred ehhHHHH
Q 002289 550 IILGAIA 556 (941)
Q Consensus 550 ii~g~~~ 556 (941)
|+.|++.
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 3344443
No 471
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=86.46 E-value=0.083 Score=57.80 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCcccccccCCCCCCCCCCCccCCCCCCCCCCCC
Q 002289 893 KTPEFINSEHTSKEETPPSSSSMLKHPYVSSDVS 926 (941)
Q Consensus 893 ~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~~~~ 926 (941)
...+||.+||..||++|||++|+++||||.....
T Consensus 281 ~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~~ 314 (348)
T 1u5q_A 281 YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP 314 (348)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCC
T ss_pred HHHHHHHHHcccChhhCcCHHHHhhChhhhccCC
Confidence 3467999999999999999999999999976543
No 472
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=83.77 E-value=0.053 Score=60.96 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=29.8
Q ss_pred CCCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 890 SDTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 890 ~~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
..+...++|.+||..||++|||+.|+++||||+.
T Consensus 336 ~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~ 369 (413)
T 3dzo_A 336 IPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQ 369 (413)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHH
Confidence 3445677999999999999999999999999965
No 473
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.08 E-value=1 Score=32.22 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=11.3
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHhhhh
Q 002289 546 ALAGIILGAIAGAVTISAIVSLLIVRA 572 (941)
Q Consensus 546 ~~~~ii~g~~~~~~~~~~~~~~~~~~~ 572 (941)
.++++++| +..++++++++.++++|+
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehh
Confidence 35566666 333333333333344333
No 474
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=75.93 E-value=6.3 Score=39.20 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCceeeeeeccccCCcEEEEEecCCC-CCHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCeEeccCCCCcE
Q 002289 663 HHRNLVSLVGYCDEEGEQMLVYEFMSN-GTLRDQLSAKSKEPLGFAMRLSIALGSSRGILYLHTEADPPVFHRDIKASNI 741 (941)
Q Consensus 663 ~h~nIv~l~~~~~~~~~~~LV~e~~~~-gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NI 741 (941)
.||+.+.. .+-.+++...+.|+.-+. -+... + ..++...+++++..|+....++++ -+|--|.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-i-----k~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-I-----KSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-G-----GGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-H-----HhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceE
Confidence 57887765 455555666666665432 22222 3 236788899999999987766654 37888999999
Q ss_pred EEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCCC
Q 002289 742 LLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS 818 (941)
Q Consensus 742 Ll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf~ 818 (941)
+++.++.+++.=.|+-..+ +|. ..+...=.-.+=|++..+++++..|.
T Consensus 111 ~f~~~~~p~i~~RGik~~l------------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVV------------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EECTTSCEEESCCEETTTB------------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEcCCCCEEEEEccCccCC------------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999877764322 222 12222334458889999999988874
No 475
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=74.55 E-value=0.35 Score=51.83 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCCcccccccCCCCCCCCCC-------CccCCCCCCCCCC
Q 002289 892 TKTPEFINSEHTSKEETPPS-------SSSMLKHPYVSSD 924 (941)
Q Consensus 892 ~~~~dll~~~L~~dP~~R~s-------a~e~L~Hpwf~~~ 924 (941)
+...+++.+||..||++||| .+++++|||+.+.
T Consensus 266 ~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~ 305 (323)
T 3qup_A 266 EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLST 305 (323)
T ss_dssp HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCC
Confidence 34567999999999999999 7888999999774
No 476
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=74.07 E-value=0.24 Score=53.02 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=23.4
Q ss_pred cccccccCCCCCCCCCCCccCCCCC
Q 002289 895 PEFINSEHTSKEETPPSSSSMLKHP 919 (941)
Q Consensus 895 ~dll~~~L~~dP~~R~sa~e~L~Hp 919 (941)
.++|++||+.||++|+|++|+|+||
T Consensus 280 ~~ll~~~L~~dP~~R~s~~ell~h~ 304 (319)
T 4euu_A 280 TPVLANILEADQEKCWGFDQFFAET 304 (319)
T ss_dssp HHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred HHHHHHhccCChhhhccHHHhhhcc
Confidence 4689999999999999999999997
No 477
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=72.28 E-value=15 Score=36.71 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCCceeeeeeccccCCcEEEEEecCCCCCHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HhhcCCCCCeEeccCCCCcE
Q 002289 663 HHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSAKSKEPLGFAMRLSIALGSSRGIL-YLHTEADPPVFHRDIKASNI 741 (941)
Q Consensus 663 ~h~nIv~l~~~~~~~~~~~LV~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~-yLH~~~~~~ivH~DLkp~NI 741 (941)
.||++ -...-.+++...+.++.-+++.=...++ .++...+++++..|+.... ++++ -+|--|.|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----KTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----TSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----hcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceE
Confidence 57777 2333366677777777653332233332 2677889999998887665 4543 57888999999
Q ss_pred EEcCCCcEEEeeeccccccCCCCCCCccccccccccccCCCcccccccccCCCCchhHhHHHHHHHHHHHhCCCCC
Q 002289 742 LLDHKFTAKVADFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI 817 (941)
Q Consensus 742 Ll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~ll~elltG~~Pf 817 (941)
++|.++.+++.=.|+-.. ++|.- .+..-=.-.+=|++..++.++..|
T Consensus 116 ~f~~~~~p~i~hRGi~~~------------------------lpP~e-----~~ee~fl~qyKali~all~~K~~F 162 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKES------------------------LPPDE-----WDDERLLREVKATVLALTEGEYRF 162 (219)
T ss_dssp EECTTCCEEESCCEETTT------------------------BSSCS-----CCHHHHHHHHHHHHHHHTTCSSCH
T ss_pred EEeCCCcEEEEEcCCccc------------------------CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCH
Confidence 999999999987776332 23321 122222345788889999887777
No 478
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=71.54 E-value=0.79 Score=47.97 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhHhhCCCCCCCCcccccccCCCCCCCCCCCccCCCC
Q 002289 869 ARPSMSEVMRELESIWNMMPESDTKTPEFINSEHTSKEETPPSSSSMLKH 918 (941)
Q Consensus 869 ~RPs~~~v~~~L~~~~~~~~~~~~~~~dll~~~L~~dP~~R~sa~e~L~H 918 (941)
.......................+...+++.+||..||++|||++|+++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 269 (289)
T 4fvq_A 220 SALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRD 269 (289)
T ss_dssp TTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred cccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence 33344444444444333344455678899999999999999999999874
No 479
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=70.23 E-value=0.46 Score=54.01 Aligned_cols=59 Identities=5% Similarity=0.052 Sum_probs=16.9
Q ss_pred ccceeeccCcEEEEEEEeCC-CcEEEE------EEeccCCchh--hHhHHHHHHHHHhcCCCceeeeeecc
Q 002289 613 SSTQIGQGGYGKVYKGILPD-GTVVAV------KRAQEGSLQG--EKEFLTEIQFLSRLHHRNLVSLVGYC 674 (941)
Q Consensus 613 ~~~~lG~G~fg~Vy~~~~~~-~~~vav------K~~~~~~~~~--~~~~~~E~~~l~~l~h~nIv~l~~~~ 674 (941)
+.+.|| ||.||+|.+.. ..+||| |..+...... ...+.+|..+++..+|+|+++.+++.
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 356676 99999999854 467888 7666433222 24678899999999999999988764
No 480
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=70.17 E-value=5.8 Score=42.91 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 846 SYPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 846 ~~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.++..++..+.+++.+|++.||++||++.+++++
T Consensus 301 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 334 (373)
T 1q8y_A 301 KFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH 334 (373)
T ss_dssp CCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHhccCccccCCHHHHhhC
Confidence 4567888999999999999999999999999763
No 481
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=70.08 E-value=1.2 Score=46.53 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.++++.+++.+|++.||++|||+.|++++
T Consensus 235 ~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 235 LSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 34567889999999999999999999874
No 482
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=66.55 E-value=0.72 Score=49.90 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccC-------------CCCCCCCC
Q 002289 889 ESDTKTPEFINSEHTSKEETPPSSSSM-------------LKHPYVSS 923 (941)
Q Consensus 889 ~~~~~~~dll~~~L~~dP~~R~sa~e~-------------L~Hpwf~~ 923 (941)
...+.+.+||.+||+.||++||||+|+ |+|||+..
T Consensus 281 ~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 281 SCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred cCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCC
Confidence 344556789999999999999999984 89999965
No 483
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.47 E-value=4.8 Score=28.88 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=18.8
Q ss_pred CccceeeehhHHHHHHHHHHHHHHHHhhhhc
Q 002289 543 SKAALAGIILGAIAGAVTISAIVSLLIVRAH 573 (941)
Q Consensus 543 ~~~~~~~ii~g~~~~~~~~~~~~~~~~~~~~ 573 (941)
+..++++.++|.+++++++++.+.++++|++
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 4456777777777766666655555554443
No 484
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=65.30 E-value=1.6 Score=45.31 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
++..+.+++.+|++.+|.+||++.+++++
T Consensus 235 ~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 235 LSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred CCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 34567889999999999999999999754
No 485
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=64.79 E-value=1.3 Score=46.92 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 853 EKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 853 ~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
+++.+++.+||..||++|||+.+++++
T Consensus 257 ~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 257 PEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 457889999999999999999998753
No 486
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=64.26 E-value=2.9 Score=44.48 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 847 YPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 847 ~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.+..+++.+.+++.+|++.+|.+||++.+++++
T Consensus 297 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 329 (339)
T 1z57_A 297 SQDVEHERLFDLIQKMLEYDPAKRITLREALKH 329 (339)
T ss_dssp CCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence 356778899999999999999999999998753
No 487
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=63.86 E-value=2.9 Score=45.82 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 896 EFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 896 dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
+||.+||..||++|||++|+|+||||++
T Consensus 370 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~ 397 (397)
T 1wak_A 370 DFLLPMLELIPEKRATAAECLRHPWLNS 397 (397)
T ss_dssp HHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred HHHHHHhccChhhcCCHHHHhhCccccC
Confidence 6889999999999999999999999974
No 488
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=62.39 E-value=3.6 Score=29.01 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=9.5
Q ss_pred eeeehhHHHHHHHHHH
Q 002289 547 LAGIILGAIAGAVTIS 562 (941)
Q Consensus 547 ~~~ii~g~~~~~~~~~ 562 (941)
+++|++|++++++.++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 3456666666666555
No 489
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=61.94 E-value=5.6 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCccceeeehhHHHHHHHHHHHHHHHHhhhhcc
Q 002289 542 ISKAALAGIILGAIAGAVTISAIVSLLIVRAHM 574 (941)
Q Consensus 542 ~~~~~~~~ii~g~~~~~~~~~~~~~~~~~~~~~ 574 (941)
....++++.++|.+++++++.+.+.++++|++.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 345567777777777666666555555544443
No 490
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=58.75 E-value=4.2 Score=43.61 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 848 PSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 848 ~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.......+.+++.+|++.+|++||++.+++++
T Consensus 303 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 334 (355)
T 2eu9_A 303 DSLEHVQLFDLMRRMLEFDPAQRITLAEALLH 334 (355)
T ss_dssp CSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cchhHHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 34567789999999999999999999998753
No 491
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=58.53 E-value=0.76 Score=48.91 Aligned_cols=33 Identities=6% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCCcccccccCCCCCCCCCCCccCCCCCCCCC
Q 002289 891 DTKTPEFINSEHTSKEETPPSSSSMLKHPYVSS 923 (941)
Q Consensus 891 ~~~~~dll~~~L~~dP~~R~sa~e~L~Hpwf~~ 923 (941)
.....+++.+||..||++||++.+++.|+|++.
T Consensus 247 ~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp CHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 344567999999999999999999999999864
No 492
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=58.13 E-value=4.9 Score=43.99 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.3
Q ss_pred ccccccCCCCCCCCCCCccCCCCCCCCCC
Q 002289 896 EFINSEHTSKEETPPSSSSMLKHPYVSSD 924 (941)
Q Consensus 896 dll~~~L~~dP~~R~sa~e~L~Hpwf~~~ 924 (941)
+||.+||++||++||||+|+|+||||+..
T Consensus 351 dli~~mL~~dP~~Rpta~e~L~hp~f~~~ 379 (382)
T 2vx3_A 351 DLILRMLDYDPKTRIQPYYALQHSFFKKT 379 (382)
T ss_dssp HHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred HHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence 68888999999999999999999999864
No 493
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=57.05 E-value=4.8 Score=42.36 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.+..+.+++..|++.+|.+||++.+++++
T Consensus 257 ~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 257 ISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp CCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred ccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 44568899999999999999999999864
No 494
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=56.94 E-value=2.8 Score=43.98 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMR 878 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~ 878 (941)
++..+.+++..|++.+|.+||++.++++
T Consensus 248 ~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 248 WSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp SCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 4467889999999999999999999875
No 495
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=56.05 E-value=3.1 Score=43.35 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 851 CVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 851 ~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.+..+.+++.+|++.||++||++.+++++
T Consensus 253 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 253 LDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 45678899999999999999999998753
No 496
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=55.39 E-value=3.2 Score=45.60 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 847 YPSECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 847 ~~~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
.+..++..+.+++.+|++.||.+||++.+++++
T Consensus 302 ~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 302 YHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp ----CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 344556788999999999999999999999864
No 497
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=55.16 E-value=3.5 Score=43.04 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 849 SECVEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 849 ~~~~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
......+.+++.+|++.||++||++.+++++
T Consensus 253 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 253 PKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 3456778899999999999999999999863
No 498
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=54.66 E-value=6.4 Score=40.85 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 002289 853 EKFIKLALKCCQDETDARPSMSEVMR 878 (941)
Q Consensus 853 ~~l~~l~~~c~~~~p~~RPs~~~v~~ 878 (941)
..+.+++.+|++.+|++||++.++++
T Consensus 253 ~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 253 PQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 45778999999999999999999975
No 499
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=54.07 E-value=4.1 Score=42.15 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 852 VEKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 852 ~~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
+..+.+++..|++.+|++||++.+++++
T Consensus 235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 235 TPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 4567899999999999999999999864
No 500
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=53.91 E-value=6.6 Score=41.31 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 002289 853 EKFIKLALKCCQDETDARPSMSEVMRE 879 (941)
Q Consensus 853 ~~l~~l~~~c~~~~p~~RPs~~~v~~~ 879 (941)
..+.+++.+|++.||.+||++.+++++
T Consensus 270 ~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 270 CAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHHHHhhCChhhCCCHHHHhcC
Done!