Your job contains 1 sequence.
>002290
MNFSIFTNTSPMALSSTLRFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPIL
ASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPV
HRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIR
GHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL
PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLI
MGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVE
NKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQP
KQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPS
NSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRK
NILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPN
TFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA
GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQ
LVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM
DIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY
KFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL
ELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002290
(941 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2075765 - symbol:GYRA "DNA GYRASE A" species:3... 3381 0. 1
UNIPROTKB|Q7NC97 - symbol:gyrA "DNA gyrase subunit A" spe... 2043 2.4e-211 1
TIGR_CMR|CHY_2704 - symbol:CHY_2704 "DNA gyrase, A subuni... 1700 9.7e-185 2
UNIPROTKB|P05653 - symbol:gyrA "DNA gyrase subunit A" spe... 1675 3.4e-182 2
TIGR_CMR|BA_0006 - symbol:BA_0006 "DNA gyrase, A subunit"... 1674 4.4e-180 2
UNIPROTKB|P0AES4 - symbol:gyrA species:83333 "Escherichia... 1129 5.6e-178 3
UNIPROTKB|A9WK19 - symbol:gyrA "DNA gyrase subunit A" spe... 1677 1.5e-177 2
TIGR_CMR|DET_1630 - symbol:DET_1630 "DNA gyrase, A subuni... 1651 9.4e-176 2
TIGR_CMR|CBU_0524 - symbol:CBU_0524 "DNA gyrase, A subuni... 1157 1.5e-169 3
UNIPROTKB|Q9KSJ8 - symbol:gyrA "DNA gyrase subunit A" spe... 1161 7.0e-169 2
TIGR_CMR|VC_1258 - symbol:VC_1258 "DNA gyrase, subunit A"... 1161 7.0e-169 2
UNIPROTKB|Q74H88 - symbol:gyrA "DNA gyrase subunit A" spe... 1117 1.4e-166 3
TIGR_CMR|GSU_0004 - symbol:GSU_0004 "DNA gyrase, A subuni... 1117 1.4e-166 3
TIGR_CMR|SO_2411 - symbol:SO_2411 "DNA gyrase, A subunit"... 1140 3.1e-166 2
UNIPROTKB|Q89L52 - symbol:gyrA "DNA gyrase subunit A" spe... 1135 2.5e-165 3
UNIPROTKB|Q7NIY2 - symbol:gyrA "DNA gyrase subunit A" spe... 1566 7.3e-165 2
UNIPROTKB|Q8CM44 - symbol:gyrA "DNA gyrase subunit A" spe... 1504 2.0e-162 2
TIGR_CMR|CJE_1171 - symbol:CJE_1171 "DNA gyrase, A subuni... 1568 5.1e-161 1
UNIPROTKB|Q8A9B6 - symbol:gyrA "DNA gyrase subunit A" spe... 1482 3.3e-160 2
UNIPROTKB|A6V2Q7 - symbol:gyrA "DNA gyrase subunit A" spe... 1168 6.8e-159 3
TIGR_CMR|SPO_2051 - symbol:SPO_2051 "DNA gyrase, A subuni... 1103 1.3e-157 3
UNIPROTKB|Q07702 - symbol:gyrA "DNA gyrase subunit A" spe... 1457 1.5e-155 2
TIGR_CMR|NSE_0958 - symbol:NSE_0958 "DNA gyrase, A subuni... 1073 9.1e-154 2
UNIPROTKB|Q3KMH3 - symbol:gyrA_1 "DNA gyrase subunit A" s... 1433 3.9e-153 2
UNIPROTKB|Q9RT53 - symbol:gyrA "DNA gyrase subunit A" spe... 1412 5.1e-151 2
UNIPROTKB|P35885 - symbol:gyrA "DNA gyrase subunit A" spe... 1388 6.1e-142 1
UNIPROTKB|Q45066 - symbol:parC "DNA topoisomerase 4 subun... 1208 4.3e-128 2
UNIPROTKB|O67108 - symbol:gyrA "DNA gyrase subunit A" spe... 1235 9.9e-126 1
TIGR_CMR|APH_0899 - symbol:APH_0899 "DNA gyrase, A subuni... 1136 1.5e-125 2
UNIPROTKB|O50510 - symbol:O50510 "DNA gyrase-like protein... 1229 4.3e-125 1
TIGR_CMR|BA_3656 - symbol:BA_3656 "DNA topoisomerase IV, ... 1211 3.5e-123 1
TIGR_CMR|ECH_0858 - symbol:ECH_0858 "DNA gyrase, A subuni... 1097 1.7e-120 2
UNIPROTKB|Q89K54 - symbol:gyrA "Topoisomerase II" species... 1026 1.4e-103 1
TIGR_CMR|CBU_1866 - symbol:CBU_1866 "DNA topoisomerase IV... 959 1.8e-99 2
UNIPROTKB|Q9KPE0 - symbol:VC_2430 "Topoisomerase IV, subu... 986 2.4e-99 1
TIGR_CMR|VC_2430 - symbol:VC_2430 "topoisomerase IV, subu... 986 2.4e-99 1
UNIPROTKB|A6VD77 - symbol:parC "DNA topoisomerase IV, A s... 953 5.3e-98 2
TIGR_CMR|SO_3897 - symbol:SO_3897 "DNA topoisomerase IV, ... 958 2.2e-96 1
TIGR_CMR|SPO_0726 - symbol:SPO_0726 "DNA topoisomerase IV... 947 3.3e-95 1
UNIPROTKB|P0AFI2 - symbol:parC species:83333 "Escherichia... 943 8.7e-95 1
UNIPROTKB|A8ISW5 - symbol:CHLREDRAFT_115934 "Predicted pr... 841 5.6e-84 1
GENEDB_PFALCIPARUM|PFL1120c - symbol:PFL1120c "DNA GyrAse... 505 8.2e-54 3
UNIPROTKB|Q8I0X3 - symbol:GyrA "DNA gyrase subunit A;evid... 505 8.2e-54 3
UNIPROTKB|Q8EYM0 - symbol:gyrA "DNA gyrase subunit A" spe... 266 2.5e-27 2
UNIPROTKB|Q3KL34 - symbol:gyrA_2 "DNA gyrase subunit A" s... 275 2.5e-27 2
UNIPROTKB|Q8A1S9 - symbol:BT_3579 "Topoisomerase IV subun... 271 1.1e-20 2
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 199 2.9e-12 3
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 199 2.9e-12 3
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 194 3.5e-11 1
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 194 3.5e-11 1
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 191 8.3e-11 1
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 155 2.1e-10 2
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 154 2.7e-10 2
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 154 2.8e-10 2
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 154 3.2e-10 2
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 183 6.8e-10 1
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 181 8.7e-10 1
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 159 1.6e-09 3
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 159 1.6e-09 3
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 159 1.6e-09 3
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 147 2.4e-09 2
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 144 5.0e-09 2
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 168 1.2e-08 2
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 170 1.8e-08 1
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 170 1.8e-08 1
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 169 3.0e-08 1
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 166 5.3e-08 1
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 162 1.3e-07 1
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 158 1.7e-07 1
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 158 1.7e-07 1
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 170 1.9e-07 3
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 176 2.0e-07 3
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 160 2.2e-07 1
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 160 2.2e-07 1
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 159 2.8e-07 1
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 156 3.2e-07 2
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 158 3.6e-07 1
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 158 3.6e-07 1
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 167 4.5e-07 2
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 167 4.5e-07 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 165 4.7e-07 2
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 156 5.9e-07 1
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 156 6.2e-07 1
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 154 9.7e-07 1
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 152 1.6e-06 1
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 152 1.6e-06 1
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 152 1.6e-06 1
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 152 1.6e-06 1
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 141 2.0e-06 2
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 151 3.2e-06 2
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 138 4.7e-05 1
RGD|1586156 - symbol:Top2b "topoisomerase (DNA) II beta" ... 120 0.00016 1
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 154 0.00019 3
>TAIR|locus:2075765 [details] [associations]
symbol:GYRA "DNA GYRASE A" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=ISS] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA;IGI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA;IBA]
[GO:0006265 "DNA topological change" evidence=IEA;IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=IBA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009295 "nucleoid" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005739 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0006355 GO:GO:0006351 EMBL:AC011560
EMBL:AC011708 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009330 GO:GO:0009295 GO:GO:0016592 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 IPI:IPI00544444
RefSeq:NP_187680.2 UniGene:At.39883 ProteinModelPortal:Q9CAF6
SMR:Q9CAF6 IntAct:Q9CAF6 STRING:Q9CAF6 PaxDb:Q9CAF6 PRIDE:Q9CAF6
EnsemblPlants:AT3G10690.1 GeneID:820238 KEGG:ath:AT3G10690
GeneFarm:2654 TAIR:At3g10690 InParanoid:Q9CAF6 OMA:IAQEDVV
PhylomeDB:Q9CAF6 ProtClustDB:CLSN2690844 Genevestigator:Q9CAF6
GermOnline:AT3G10690 TIGRFAMs:TIGR01063 Uniprot:Q9CAF6
Length = 950
Score = 3381 (1195.2 bits), Expect = 0., P = 0.
Identities = 662/859 (77%), Positives = 761/859 (88%)
Query: 63 KDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHR 122
K+E NG + G RIVP ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHR
Sbjct: 82 KEESGANNGGLVVSGDE--SRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHR 139
Query: 123 RILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGH 182
RILFAMHELG+SS+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GH
Sbjct: 140 RILFAMHELGMSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGH 199
Query: 183 GNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXX 242
GNFGSIDADP AAMRYTECRL+ L+EA+LL+D+DQDTV+FV NFD SQKE
Sbjct: 200 GNFGSIDADPPAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPA 259
Query: 243 XXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG 302
NGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMG
Sbjct: 260 LLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMG 319
Query: 303 NLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENK 362
NLG+LDAYRTGRGR+ VRGK EVELLD K+KR VII EIPYQTNK+ LV+KIAELVENK
Sbjct: 320 NLGVLDAYRTGRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENK 379
Query: 363 TLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQ 422
TL+GISDIRDESDR+GMR+VIELKRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK
Sbjct: 380 TLEGISDIRDESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKL 439
Query: 423 MGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNS 482
MGLKE+LQAF+DFRCSVVERRARFKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S
Sbjct: 440 MGLKELLQAFIDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHS 499
Query: 483 TASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
+A+AAL+ E+ LSEKQA+AIL++ LRRLT LERKKF DES +L EQI KLE+LLS+R NI
Sbjct: 500 SATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNI 559
Query: 543 LQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTF 602
L+LIEQE IELK+RFS+PR SMLED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TF
Sbjct: 560 LKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTF 619
Query: 603 NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGT 662
NLQ+RGTIGKSVGKLRV+DAMSDF+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGT
Sbjct: 620 NLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGT 679
Query: 663 PLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
PLVQILS+S+GER+TSI+PVSEFA D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL
Sbjct: 680 PLVQILSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLN 739
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
GDELKWVRCC++DDLVAMASQNGMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDI
Sbjct: 740 SGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 799
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
IPA+L KD+E ED+ S VK S+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYKF
Sbjct: 800 IPASLRKDMEEKSEDA-SLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKF 858
Query: 843 SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL 902
+ +DRLAAVFVVG+SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ+R ARGVILMRL+
Sbjct: 859 AEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDH 918
Query: 903 SGKIQSASLISVT-EPETD 920
+GKIQSASLIS E ET+
Sbjct: 919 AGKIQSASLISAADEEETE 937
>UNIPROTKB|Q7NC97 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_926028.1
ProteinModelPortal:Q7NC97 SMR:Q7NC97 GeneID:2601483
KEGG:gvi:gvip425 PATRIC:22045635
BioCyc:GVIO251221:GH9A-3132-MONOMER Uniprot:Q7NC97
Length = 840
Score = 2043 (724.2 bits), Expect = 2.4e-211, P = 2.4e-211
Identities = 413/834 (49%), Positives = 572/834 (68%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P L EM SY+ Y+MSV++GRALPD RDGLKPVHRRILFAMHELGL +P++KCA
Sbjct: 4 IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+VLGK+HPHGD+AVYD+LVR+AQDFS RY LI GHGNFGS+D DP AAMRYTECRL
Sbjct: 64 RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
L+ LLAD++ +TV+F NFD SQ+E NG++GIAVGMATNIPPH
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGELVD + AL+ NP + EL+ Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E + + + R ++I E+PYQ K+ L+EKIAELV +K +DGISDIRDESDR G+R
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+L++LT LQ++F CNM+ +++G+P+ + LKE LQ F+DFR V+
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++L + +ER HI+ G++V L NL+ VI ++R A ++A A L + F+LSE QA+A
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQAEA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT +E + E + L+ +I L ++L R+ I Q+I E++ K R + PR
Sbjct: 424 ILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLERRERIDQIIRDELLTAKQRLNDPR 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+++E A+ G++DD D+I N EM++ ++E+GY+KR+ +TF+ Q R T GKS ++R +D
Sbjct: 484 RTIIEKAE-GEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGKSGARMREDD 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
A+ FI C HD VL+F++RG+VY+ R Y+IP +R A GTP+VQ+L + E++TSI+P
Sbjct: 543 AVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGSRTAKGTPVVQLLPIPIEEKVTSIVP 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EFA D+FLVMLT G+IKK +L F+++R G+IAI L GDEL+WVR +D + +
Sbjct: 603 VQEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRWVRRARAEDDILV 662
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +R L R RG +M L+ GD++ SMDI+ +R E +
Sbjct: 663 GSRAGMAIRFRADEEQLRPLGRTARGVKSMELRKGDELVSMDILSCE-----QR--ERAE 715
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSL 858
+N G GPW+L V+ G GKRVP S FR +G+I KF + D LAA+ VV
Sbjct: 716 AN--GECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAALRVVS--- 770
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
ED ++++V+ G + R + +IS Q+R A GV + RL+ I +++
Sbjct: 771 CED-----ELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVV 819
Score = 131 (51.2 bits), Expect = 0.00014, P = 0.00014
Identities = 55/219 (25%), Positives = 103/219 (47%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+DE L+ ++ G++K+ F NL+ G I ++G L D + RA D +L S
Sbjct: 608 SDEFLVMLTRTGFIKKTALAAFANLRANGLI--AIG-LEEGDELRWVRRARAEDDILVGS 664
Query: 640 DRGIVYSARA--YKIPECTRNAAGTPLVQILSLSDGERITSIIPVS-------EFAGD-- 688
G+ RA ++ R A G V+ + L G+ + S+ +S E G+
Sbjct: 665 RAGMAIRFRADEEQLRPLGRTARG---VKSMELRKGDELVSMDILSCEQRERAEANGECG 721
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVP-GDELKWVRCCTNDDLVAMASQN 745
+++++T +G+ K+V + F + G+IA + GDEL +R + +D + + +
Sbjct: 722 PWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAALRVVSCEDELMIVTAR 781
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
G++I + I SR G RL + D + + ++P
Sbjct: 782 GVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVP 820
>TIGR_CMR|CHY_2704 [details] [associations]
symbol:CHY_2704 "DNA gyrase, A subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
HOGENOM:HOG000076279 RefSeq:YP_361486.1 ProteinModelPortal:Q3A8P8
SMR:Q3A8P8 STRING:Q3A8P8 GeneID:3728127 KEGG:chy:CHY_2704
PATRIC:21278429 BioCyc:CHYD246194:GJCN-2702-MONOMER Uniprot:Q3A8P8
Length = 812
Score = 1700 (603.5 bits), Expect = 9.7e-185, Sum P(2) = 9.7e-185
Identities = 335/701 (47%), Positives = 476/701 (67%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV+L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LG++ KP +K
Sbjct: 6 KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEVLGKFHPHGD AVYD++VRMAQDFS RYPLI GHGNFGS+D D AAAMRYTE R
Sbjct: 66 AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPH 262
+ ++ ML DID++TV+F+PN+D S KE NG+SGIAVGMATNIPPH
Sbjct: 126 MAKITVEML-RDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I +PE + EL++ + GPDFPTGG IMG GI AY TGRG I VR
Sbjct: 185 NLREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAV 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T E L + +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR GMRIV
Sbjct: 245 TTFEKLSGG--KTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P +V+N L++ T LQ +F M+ ++D QP+ + LKE+L +L+ + VV R
Sbjct: 303 IELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L++ +ER HI+EG+ + L NLD VI+I+R + TA L F L+EKQA AI
Sbjct: 363 RTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L+++I +L+ + +L +I QE++E+K ++ R
Sbjct: 423 LDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDARR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +S D+ D+I ++M++ I+ +GY+KR+ +T+ Q RG G + + D
Sbjct: 483 TQITNEES-IFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMATKEEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H+++L+F+++G VY + ++IPE R A GTP+V +L + ERIT+IIPV
Sbjct: 542 VRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERITAIIPV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L M+T NG +KK L+ + S R GIIA+ L GD+L V+ T + V +
Sbjct: 602 KEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
++ GM I S +R + R RG + L GD++ ++++
Sbjct: 662 TKKGMAIRFSETDVRPMGRTARGVKGITLSPGDEVIGLEVV 702
Score = 114 (45.2 bits), Expect = 9.7e-185, Sum P(2) = 9.7e-185
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
LL V+ G GK+ P S +R G+I K + ++ VVG +++V+
Sbjct: 708 LLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGE----VVGIVAVRP---EDEVM 760
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+S G + R+K +IS Q R +GV LM+L ++ + + I+ E E
Sbjct: 761 AISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDE 809
Score = 53 (23.7 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
Identities = 26/128 (20%), Positives = 57/128 (44%)
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV--GLIGYKFSAEDRLAAVFVV 854
D +VK S+G + + G + S P+ R G+ G S D V+
Sbjct: 644 DKLIDVKLSTGQEEVIIGTK-KGMAIRFSETDVRPMGRTARGVKGITLSPGDE-----VI 697
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLIS 913
G + ++ +++ V+ G + + +Q R +G+I M++ + +G++ +++
Sbjct: 698 GLEVVDE---QAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEV--VGIVA 752
Query: 914 VTEPETDL 921
V PE ++
Sbjct: 753 V-RPEDEV 759
>UNIPROTKB|P05653 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AL009126
GenomeReviews:AL009126_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:D26185 EMBL:X02369 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 PIR:F22930
RefSeq:NP_387888.1 ProteinModelPortal:P05653 SMR:P05653
IntAct:P05653 EnsemblBacteria:EBBACT00000002843 GeneID:940002
KEGG:bsu:BSU00070 PATRIC:18971463 GenoList:BSU00070
ProtClustDB:PRK05560 BioCyc:BSUB:BSU00070-MONOMER BindingDB:P05653
ChEMBL:CHEMBL4216 Uniprot:P05653
Length = 821
Score = 1675 (594.7 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 330/756 (43%), Positives = 508/756 (67%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++E NGA+GIAVGMATNIP
Sbjct: 126 ARMSKISME-ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ + ++NG++I +R + R G + L D D + M+I+ H +
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYG 720
Query: 792 ERTP-EDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826
+RTP E+ + +G G ++E+ +G+ V + +
Sbjct: 721 KRTPAEEYRTQSRGGKGLKTAKITEN-NGQLVAVKA 755
Score = 115 (45.5 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQV 868
+L V+E G+GKR P +R GL K + + +L AV A GE D +
Sbjct: 711 VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------KATKGEED--L 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
++++ SG + R+ + DISI R +GV L+R+ + + +L+ E +
Sbjct: 763 MIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALVEKNEED 812
>TIGR_CMR|BA_0006 [details] [associations]
symbol:BA_0006 "DNA gyrase, A subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 HOGENOM:HOG000076279
HSSP:P09097 RefSeq:NP_842578.1 RefSeq:YP_016609.1
RefSeq:YP_026297.1 ProteinModelPortal:Q81W30 SMR:Q81W30
DNASU:1083944 EnsemblBacteria:EBBACT00000012746
EnsemblBacteria:EBBACT00000018520 EnsemblBacteria:EBBACT00000022030
GeneID:1083944 GeneID:2816389 GeneID:2851434 KEGG:ban:BA_0006
KEGG:bar:GBAA_0006 KEGG:bat:BAS0006
BioCyc:BANT260799:GJAJ-6-MONOMER BioCyc:BANT261594:GJ7F-6-MONOMER
Uniprot:Q81W30
Length = 823
Score = 1674 (594.3 bits), Expect = 4.4e-180, Sum P(2) = 4.4e-180
Identities = 328/754 (43%), Positives = 503/754 (66%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++E NG +GIAVGMATNIPPH
Sbjct: 129 MSKISME-LIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTNDD 543
Query: 623 --MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+ + HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +II
Sbjct: 544 DFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAII 603
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D +
Sbjct: 604 PIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDII 663
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL-------ER 793
+ + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++ + +R
Sbjct: 664 VGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKR 723
Query: 794 TPEDSHS-NVKGSSGPWLLFVSESGHGKRVPLSS 826
TP D + +G G +++ +GK V + S
Sbjct: 724 TPIDEYRLQSRGGKGLKTCNITDK-NGKLVAVKS 756
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 60/250 (24%), Positives = 118/250 (47%)
Query: 560 PRLSMLEDADSGQLDDIDIIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKS 613
P +++L D G+ + IIP +DE L +++G KR ++F N++ G I S
Sbjct: 586 PIINLL-GVDKGEWINA-IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAIS 643
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
LR D + + ++ + G++ + RNAAG V+ ++L +
Sbjct: 644 ---LREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGEE 697
Query: 674 ERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWV 730
+++ + V E D ++++T NGY K+ ++ + S G+ + + +L V
Sbjct: 698 DQVVGMEIVEE---DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAV 754
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ T ++ + + + G++I D I + RNT+G +RL+D ++A+ + A D
Sbjct: 755 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVAT---VAKAQKDD 811
Query: 791 LERTPEDSHS 800
E T E+ S
Sbjct: 812 EEETSEEVSS 821
Score = 96 (38.9 bits), Expect = 4.4e-180, Sum P(2) = 4.4e-180
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQV 868
+L V+++G+GKR P+ +R GL + ++ +L AV V GE D +
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV------TGEED--I 763
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+L++ +G + R+ V IS R +GV L+RLE
Sbjct: 764 MLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>UNIPROTKB|P0AES4 [details] [associations]
symbol:gyrA species:83333 "Escherichia coli K-12"
[GO:0042493 "response to drug" evidence=IMP] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0016020 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:X06373 EMBL:X06744
EMBL:M15631 EMBL:Y00544 PIR:S02340 RefSeq:NP_416734.1
RefSeq:YP_490470.1 PDB:1AB4 PDB:1X75 PDB:1ZI0 PDB:2Y3P PDB:3NUH
PDB:4ELY PDBsum:1AB4 PDBsum:1X75 PDBsum:1ZI0 PDBsum:2Y3P
PDBsum:3NUH PDBsum:4ELY ProteinModelPortal:P0AES4 SMR:P0AES4
DIP:DIP-36179N IntAct:P0AES4 MINT:MINT-201682 SWISS-2DPAGE:P0AES4
PaxDb:P0AES4 PRIDE:P0AES4 EnsemblBacteria:EBESCT00000004656
EnsemblBacteria:EBESCT00000017137 GeneID:12933138 GeneID:946614
KEGG:ecj:Y75_p2193 KEGG:eco:b2231 PATRIC:32119821 EchoBASE:EB0418
EcoGene:EG10423 BioCyc:EcoCyc:EG10423-MONOMER
BioCyc:ECOL316407:JW2225-MONOMER BioCyc:MetaCyc:EG10423-MONOMER
BindingDB:P0AES4 ChEMBL:CHEMBL1858 EvolutionaryTrace:P0AES4
Genevestigator:P0AES4 Gene3D:1.10.268.10 Uniprot:P0AES4
Length = 875
Score = 1129 (402.5 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 219/410 (53%), Positives = 301/410 (73%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATN 258
TE RL ++ L+AD++++TV+FV N+D ++K NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK+++ AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
VV RR F+L + ++R HI+E + V L N+D +I ++R AP+ + A AL
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTAL 410
Score = 531 (192.0 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 112/293 (38%), Positives = 180/293 (61%)
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
+ L+E+QA AILD+ L++LT LE +K +DE K L++QI +L +L S ++++I +E+
Sbjct: 448 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 507
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
++ +F R + + A+S ++ D+I +++++ +S +GYVK + + Q RG G
Sbjct: 508 LVREQFGDKRRTEIT-ANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG 566
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
KS +++ D + +V HDH+L FS RG VYS + Y++PE TR A G P+V +L L
Sbjct: 567 KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE 626
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
ERIT+I+PV+EF + M T NG +KK L F+ +RT G +AI+LV GDEL V
Sbjct: 627 QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD 686
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ +D V + S G V+ +R++ NT G +RL +GDK+ S+ I+P
Sbjct: 687 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL-IVP 738
Score = 127 (49.8 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 50/205 (24%), Positives = 92/205 (44%)
Query: 592 GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651
G VK+ FN T GK KL D + + D V+ FS G V +
Sbjct: 653 GTVKKTVLTEFNRLR--TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS 710
Query: 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--S 709
+ N G V+ + L +G+++ S+I V GD ++ T NGY K+ ++ +
Sbjct: 711 VRAMGCNTTG---VRGIRLGEGDKVVSLI-VPR--GDGAILTATQNGYGKRTAVAEYPTK 764
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTND-DLVAMASQNGMVILSSCDIIRSLSRNTRGSVA 768
S T G+I+I++ + L +D D + M + G ++ + I + RNT+G +
Sbjct: 765 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824
Query: 769 MRLKDGDKMASMDIIPAAL-HKDLE 792
+R + + + + + + +DL+
Sbjct: 825 IRTAEDENVVGLQRVAEPVDEEDLD 849
Score = 106 (42.4 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 38/126 (30%), Positives = 63/126 (50%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L +++G+GKR ++ + G+I K + + L VVG +D + Q++
Sbjct: 744 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL----VVGAVQVDDCD---QIM 796
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP--ETDLFLPSTS 927
+++ +GT+ R +V +ISI R +GVIL+R + L V EP E DL T
Sbjct: 797 MITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV--VGLQRVAEPVDEEDL---DTI 851
Query: 928 DKLATE 933
D A E
Sbjct: 852 DGSAAE 857
Score = 88 (36.0 bits), Expect = 2.8e-131, Sum P(3) = 2.8e-131
Identities = 59/295 (20%), Positives = 130/295 (44%)
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLM---EQILKLEELLSSRKNILQLIEQEVIELK- 554
AD ++++ +R L R++F D+ +T + + LE+L++ ++ L Q ++ +
Sbjct: 495 ADRLMEV-IREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQP 553
Query: 555 -NRFSTPRL-----SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRG 608
+ + R S + +D + + + +L S +G V MK RG
Sbjct: 554 LSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 613
Query: 609 TIGKSVGKL---RVNDAMSDFI-VCRAHDHVLYF--SDRGIVYSARAYKIPECTR-NAAG 661
G+ + L ++ ++ + V + V F + G V + + E R AG
Sbjct: 614 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV---KKTVLTEFNRLRTAG 670
Query: 662 TPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYI---KKVSLNLFSSIRTTGIIA 718
++++ DG+ + I V +G+ +++ + G + K+ S+ TTG+
Sbjct: 671 KVAIKLV---DGDEL---IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTTGVRG 723
Query: 719 IQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD 773
I+L GD++ + D + A+QNG ++ + SR T+G +++++ +
Sbjct: 724 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 778
Score = 87 (35.7 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 37/177 (20%), Positives = 74/177 (41%)
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
+++ V+ NR T ++ D +L +D+ ++ ++ S +G V R K ++
Sbjct: 655 VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM 714
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
T G +L D + IV R +L + G Y R T++ A ++
Sbjct: 715 GCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG--YGKRTAVAEYPTKSRATKGVI 772
Query: 666 QILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSI--RTTGIIAIQ 720
I + + V + DQ ++M+T G + + ++ S + T G+I I+
Sbjct: 773 SIKVTERNGLVVGAVQVDDC--DQ-IMMITDAGTLVRTRVSEISIVGRNTQGVILIR 826
Score = 66 (28.3 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+LF +E G R SS R + N G+ G + D++ ++ V D ++
Sbjct: 695 MLFSAE-GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP--------RGDGAIL 745
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSA 909
+Q+G R V + ++R +GVI +++ E +G + A
Sbjct: 746 TATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 786
Score = 54 (24.1 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 28/109 (25%), Positives = 45/109 (41%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
+S G+ K PLS + G + ED + + V + + ++ S
Sbjct: 543 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN--------THDHILCFS 594
Query: 873 QSGTVNRIKVRDISIQARYARG---VILMRLELSGKIQSASLISVTEPE 918
G V +KV + R ARG V L+ LE +I +++ VTE E
Sbjct: 595 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI--TAILPVTEFE 641
Score = 45 (20.9 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 430 QAFLDFRCSVVERRARFKL-SQVKERRHIVEGIMVGLDNLDRVIRIVRE 477
QA LD R + KL + KE + ++ L + DR++ ++RE
Sbjct: 456 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 504
>UNIPROTKB|A9WK19 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HOGENOM:HOG000076279 RefSeq:YP_001634859.1
ProteinModelPortal:A9WK19 SMR:A9WK19 STRING:A9WK19 GeneID:5828345
KEGG:cau:Caur_1241 PATRIC:21413315
BioCyc:CAUR324602:GIXU-1260-MONOMER Uniprot:A9WK19
Length = 822
Score = 1677 (595.4 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 325/701 (46%), Positives = 484/701 (69%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
PV + EM +Y++Y+MSV++ RALPD RDGLKPV RRIL+ M ++G S +P+KK AR+
Sbjct: 8 PVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+VLGK HPHGD+AVYD+L RMAQ +S+RYPLI G GNFGSID DP AAMRYTE RL
Sbjct: 68 VGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARLAP 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLG 265
++E LL++I++DTV+F NFD S +E NGASGIAVGMATNIPPHNLG
Sbjct: 128 IAEE-LLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNLG 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL D + LI +PEAT++EL++ +PGPDFPT GLI+G GIL AY TGRG+IT+R KT +
Sbjct: 187 ELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ +++ E+PYQ NK+ L E+IAELV+++ ++GI D+RDESDR+GMR+VI L
Sbjct: 247 E--EAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILD-G-QPKQMGLKEVLQAFLDFRCSVVERR 443
K+ A P V+N+LY+ T +Q++F NM+ +++ G QP+ + LK +LQ ++ R V+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L++ +ER HI+EG+ + LDNLD VI+ +R++ + +A L F L+E+QA AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
D+ LRRL LERKK DE + +++ I +LE++L++ + +L LI+Q++ LK ++ PR +
Sbjct: 425 DLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDPRRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV-GKL-RVND 621
+ +G++ D D+IP+ +++ ++++GY+KR P+ + Q RG G+ + G L R D
Sbjct: 485 RIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRG--GRGIKGMLTREQD 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + C + D++L+F+DRG VY +A+++P+ +R A G PLV ++SL GE++TS++
Sbjct: 543 IVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLA 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF + +LVM T+ G IK+ L +S +R+ G+IAI L GD L WVR + + +
Sbjct: 603 VREFDAE-YLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILL 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
+ G + +R + R G + + L DGD++ SMD+
Sbjct: 662 TTARGQTLRFEQSEVRPMGRPATGVIGINLADGDRVVSMDL 702
Score = 143 (55.4 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 62/260 (23%), Positives = 122/260 (46%)
Query: 532 LEELL--SSRKNILQLIEQEVIEL-KNRFSTPRLSMLEDADSGQLDDIDIIPN-D-EMLL 586
L+ LL + R + QL EV + + P ++++ Q+ + + D E L+
Sbjct: 553 LDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAVREFDAEYLV 612
Query: 587 AISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ +G +KR + ++ +++ G I ++G L D + V H+ +L + RG
Sbjct: 613 MATVRGKIKRTQLREYSQVRSNGLI--AIG-LEEGDVLGWVRVSHGHEDILLTTARGQTL 669
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705
++ R A G V ++L+DG+R+ S+ ++E D L+++T G K+ +L
Sbjct: 670 RFEQSEVRPMGRPATG---VIGINLADGDRVVSM-DLAEEGAD--LLVVTARGIGKRTAL 723
Query: 706 NLF--SSIRTTGIIAIQLVPG-DELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRN 762
+ + T G+I I+L DE+ L+ + GMV+ +S I L R
Sbjct: 724 SEYPVKGRATGGVITIKLRNDLDEVAAAAVVREHSLLTFITTGGMVLRTSASEISRLGRA 783
Query: 763 TRGSVAMRLKDGDKMASMDI 782
T+G + + GD++A++ +
Sbjct: 784 TQGVTIVNVATGDRVAALSV 803
Score = 69 (29.3 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L + G R S R + G+IG + DR VV LAE+G +D ++
Sbjct: 659 ILLTTARGQTLRFEQSEVRPMGRPATGVIGINLADGDR-----VVSMDLAEEG-AD--LL 710
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+V+ G R + + ++ R GVI ++L
Sbjct: 711 VVTARGIGKRTALSEYPVKGRATGGVITIKL 741
Score = 69 (29.3 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGESD 865
G LL V+ G GKR LS + G+I K + D +AA VV
Sbjct: 706 GADLLVVTARGIGKRTALSEYPVKGRATGGVITIKLRNDLDEVAAAAVV--------REH 757
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ ++ G V R +IS R +GV ++ + ++ + +SV +PE
Sbjct: 758 SLLTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAA---LSVEDPE 807
>TIGR_CMR|DET_1630 [details] [associations]
symbol:DET_1630 "DNA gyrase, A subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_182324.1 ProteinModelPortal:Q3Z625 SMR:Q3Z625
STRING:Q3Z625 GeneID:3229170 KEGG:det:DET1630 PATRIC:21610274
BioCyc:DETH243164:GJNF-1631-MONOMER Uniprot:Q3Z625
Length = 809
Score = 1651 (586.2 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 329/698 (47%), Positives = 473/698 (67%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + EEM GSY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM++LG+ P+KK AR+
Sbjct: 8 PINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ FS RYPL+ G GNFGS+D DP AAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEARLAQ 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLG 265
++E LL DID++TV+F+PNFD S +E NG+SGIAVGMATNIPPHNL
Sbjct: 128 IAE-QLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLA 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL +C LI NP+ + +L++++ GPDFPTGG I+G GI AY TG+G+I ++ K +
Sbjct: 187 ELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+D+ R + + EIPYQ NK+ LV KIAELV+++ + GISD+RDESDR GMR+VIEL
Sbjct: 247 GEVDN---RKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIEL 303
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR A+P V+NSLY+ T +++SF NM+ ++DGQP+ + LKEVL+ F+DFR ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L K+R HI+EG+ LD +DR+I I+R + + TA L EF S QA AILD+
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQAQAILDL 423
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K +DE LM++I LE+LLS + I L++++ +LK + PR + +
Sbjct: 424 QLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSYGQPRATEI 483
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ D++P+ ++++ +SE+G++KR+ N F LQ+RG G R DA+
Sbjct: 484 SSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRF 543
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPE-CTRNAAGTPLVQILSLSDGERITSIIPVSE 684
V HD +L+F++RG V+S R + IP+ +R A GT +V ++ ++ ERIT+I+ +
Sbjct: 544 LSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKS 603
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D FL+M T G IKK SL F+++R++G+IA+ L DEL T + + +A++
Sbjct: 604 FPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKDILLATR 663
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
G I +R+ R + G A+ L GD++ SMD+
Sbjct: 664 MGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDV 701
Score = 78 (32.5 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
G ++ V+E+G GK + + + G+I +K D+ V V + E+D
Sbjct: 705 GTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFK--VVDKTGEV--VASKVVS--ETD- 757
Query: 867 QVVLVSQSGTVNRIKVRD------ISIQARYARGVILMRLELSGKI 906
Q++L+S G V R +V++ I I R +GV +MRLE ++
Sbjct: 758 QMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRV 803
>TIGR_CMR|CBU_0524 [details] [associations]
symbol:CBU_0524 "DNA gyrase, A subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:NP_819556.2 PRIDE:Q83E13 GeneID:1208409
KEGG:cbu:CBU_0524 PATRIC:17929749
BioCyc:CBUR227377:GJ7S-527-MONOMER Uniprot:Q83E13
Length = 850
Score = 1157 (412.3 bits), Expect = 1.5e-169, Sum P(3) = 1.5e-169
Identities = 223/405 (55%), Positives = 297/405 (73%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM ELG KP KK A
Sbjct: 10 IIPITIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD AVYD++VRMAQ FSLRY LI G GNFGS+D D AAMRYTE RL
Sbjct: 70 RIVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRL 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
+ A L+AD+D++TV+F PN+DE++ NGASGIAVGMATNIPPHN
Sbjct: 130 SRFAHA-LMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+++ ALI NP+ ++EL+ ++PGPDFPT G+I G GI+ AY+TGRGRI VR KT
Sbjct: 189 LNEIINATLALIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKT 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E +KS R +++ E+PYQ NK+ L+EKI ELV K ++GIS +RDESD+ GMR+VI
Sbjct: 249 EIET--TKSGRSLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+ RG + IV+N+LY T LQ+ F NMV + +GQP+ + LK++L AFL R VV RR
Sbjct: 307 EVSRGDNAEIVLNNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
F+L + +ER HI+EG+ V L N+D VI ++++A + + A L
Sbjct: 367 TLFELRKARERAHILEGLGVALANIDEVIALIKKAKTPAIAKENL 411
Score = 442 (160.7 bits), Expect = 1.5e-169, Sum P(3) = 1.5e-169
Identities = 111/356 (31%), Positives = 189/356 (53%)
Query: 476 REAPSNSTASAALKDE-FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
R P + A L+ E + LS QA AILD+ L RLT LE K +E ++++I +L
Sbjct: 432 RTRPDDLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIA 491
Query: 535 LLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYV 594
++S + ++I +E+I +K +F R +++ D D L D+IP + ++ +S +GY+
Sbjct: 492 IVSDPDKLHEVIREELIAVKEQFGDERRTVIID-DHSDLTHEDLIPEEHRVVTLSHEGYI 550
Query: 595 KRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPE 654
K +++ Q+RG GK ++ D + + +V +HD +L FS +G VY + Y++P+
Sbjct: 551 KSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQ 610
Query: 655 CTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
+R A G P++ +L L E+I++I+P+ + G F+ M T G IKKVSL FS RT
Sbjct: 611 GSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTK 670
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG 774
G IA+ L GD L V + + + G I +R + R+ RG ++LK
Sbjct: 671 GKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLKAK 730
Query: 775 DKMASM-------DIIPAALHKDLERTP-EDSHSNVKGSSGPWLLFVSESGHGKRV 822
+ ++ +I+ A +H +RT +D S +G G + ++ S +GK V
Sbjct: 731 QNVIALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRIN-SRNGKVV 785
Score = 106 (42.4 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 48/230 (20%), Positives = 102/230 (44%)
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
L +++D + I + + +G +K++ F+ Q R T GK L D
Sbjct: 624 LPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFS-QPR-TKGKIALALNEGD 681
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + ++ +D G ++ E R+A G V+ + L + + ++I
Sbjct: 682 RLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARG---VRGIKLKAKQNVIALIV 738
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVP--GDELKWVRCCTNDD 737
V G+ ++ T++GY ++ +L+ + S G++AI++ G + + +DD
Sbjct: 739 VKP-KGN--ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDD 795
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
V + S G ++ + + I + RNT+G ++L + + M+ I A L
Sbjct: 796 -VLLISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAEL 844
Score = 87 (35.7 bits), Expect = 1.5e-169, Sum P(3) = 1.5e-169
Identities = 30/111 (27%), Positives = 55/111 (49%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L + G+G+R L +R G++ + ++ + VV + D D+ V+
Sbjct: 745 ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGK----VVSAAQVFD---DDDVL 797
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRL---ELSGKIQSASLISVTEP 917
L+S GT+ R +V +IS R +GV L++L EL +++ S + EP
Sbjct: 798 LISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEEP 848
Score = 74 (31.1 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 31/121 (25%), Positives = 60/121 (49%)
Query: 802 VKGSSGPWLLFVSES-GHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
++ G +F++ + G K+V L+ F + P + G I + DRL V +
Sbjct: 638 IRAYDGSHFVFMATAQGAIKKVSLAEFSQ-PRTK-GKIALALNEGDRLVGVDIT------ 689
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
DG+ ++++LV+ +G R +++ R ARGV ++L K +LI V +P+ +
Sbjct: 690 DGK--KEIMLVTDAGKAIRFHEKEVREMGRSARGV--RGIKLKAKQNVIALI-VVKPKGN 744
Query: 921 L 921
+
Sbjct: 745 I 745
Score = 44 (20.5 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
+S G+ K LSS++ G + +D FV +A S + ++ S
Sbjct: 544 LSHEGYIKSQSLSSYQAQHRGGRGKLAAAVKEQD-----FVKNILVAN---SHDTILCFS 595
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRL 900
G V +KV + +R ARG ++ L
Sbjct: 596 TQGKVYWLKVYQVPQGSRIARGRPIINL 623
>UNIPROTKB|Q9KSJ8 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 Gene3D:1.10.268.10
HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1 ProteinModelPortal:Q9KSJ8
SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695 KEGG:vch:VC1258
PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 1161 (413.8 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
Identities = 224/410 (54%), Positives = 299/410 (72%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ NGASGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E D K +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET-DKNGKET-IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGL 409
Score = 503 (182.1 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
Identities = 134/442 (30%), Positives = 239/442 (54%)
Query: 488 LKD-EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLI 546
++D ++ L+E+QA AILD+ L +LT LE +K +DE K L+E+I L +L+S + ++++I
Sbjct: 442 IRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVI 501
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQN 606
+E+ ++ FS R + + A + +D ++I +++++ +S +GYVK + + Q
Sbjct: 502 REELEAIRAGFSDARRTEITAA-THDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQR 560
Query: 607 RGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQ 666
RG GKS K++ D + +V HD++L FS RG Y + Y++P +R A G P+V
Sbjct: 561 RGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVN 620
Query: 667 ILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDE 726
+L L + ERIT+I+PV+EF+ D+F+ M T +G +KK SL+ F+++R G+IA+ L D
Sbjct: 621 LLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDS 680
Query: 727 LKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP- 784
L V + + + S+ G V+ + + N G + ++ + P
Sbjct: 681 LIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN--GQPVLDENGQPEIKFKGVRPM 738
Query: 785 ---AALHKDLERTPEDSHSN--VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
AA + ++ D + V + G +L V+E+G+GKR LS + G++
Sbjct: 739 GRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTSLSEYPTKGRGTQGVVS 797
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
K S +R +V VG + E DE ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 798 IKVS--ERNGSV--VG--AVQVAEGDE-FMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
Query: 900 LELSGKIQSASLISVTEPETDL 921
+ I E E++L
Sbjct: 851 TSEGESVVGLQRIDEIE-ESEL 871
Score = 115 (45.5 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 39/154 (25%), Positives = 79/154 (51%)
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TT 714
R AAG V+ + L+DG+++ S+I V + GD ++ +T NGY K+ SL+ + + T
Sbjct: 740 RTAAG---VRGMKLADGDQVVSLI-VPKTEGD--VLTVTENGYGKRTSLSEYPTKGRGTQ 793
Query: 715 GIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+++I++ G + V+ D+ + M + G ++ + + + RNT+G +R
Sbjct: 794 GVVSIKVSERNGSVVGAVQVAEGDEFM-MITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+G+ + + I +L PE + V+ +
Sbjct: 853 EGESVVGLQRIDEIEESEL---PEGEEALVENDA 883
Score = 59 (25.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 36/131 (27%), Positives = 62/131 (47%)
Query: 447 KLSQ-VKERRHIVEGIMVGLDNLDRV-IRIVREAPSNSTASAALKDEFKLSEKQAD---- 500
K+++ VKE++ VEGI D D+ +RIV E ++ L + + ++ Q
Sbjct: 275 KIAELVKEKK--VEGISALRDESDKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGIN 332
Query: 501 -AILDMNLRRLTMLER--KKFVDESKTLMEQ--ILKLEELLSSRKNILQLIE------QE 549
LD +L L+ K FVD + ++ + I +L + R +IL+ + E
Sbjct: 333 MVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKA-RERAHILEGLALALANIDE 391
Query: 550 VIELKNRFSTP 560
+IEL R +TP
Sbjct: 392 IIELIRRAATP 402
>TIGR_CMR|VC_1258 [details] [associations]
symbol:VC_1258 "DNA gyrase, subunit A" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1
ProteinModelPortal:Q9KSJ8 SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695
KEGG:vch:VC1258 PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 1161 (413.8 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
Identities = 224/410 (54%), Positives = 299/410 (72%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ NGASGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E D K +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET-DKNGKET-IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGL 409
Score = 503 (182.1 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
Identities = 134/442 (30%), Positives = 239/442 (54%)
Query: 488 LKD-EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLI 546
++D ++ L+E+QA AILD+ L +LT LE +K +DE K L+E+I L +L+S + ++++I
Sbjct: 442 IRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVI 501
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQN 606
+E+ ++ FS R + + A + +D ++I +++++ +S +GYVK + + Q
Sbjct: 502 REELEAIRAGFSDARRTEITAA-THDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQR 560
Query: 607 RGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQ 666
RG GKS K++ D + +V HD++L FS RG Y + Y++P +R A G P+V
Sbjct: 561 RGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVN 620
Query: 667 ILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDE 726
+L L + ERIT+I+PV+EF+ D+F+ M T +G +KK SL+ F+++R G+IA+ L D
Sbjct: 621 LLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDS 680
Query: 727 LKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP- 784
L V + + + S+ G V+ + + N G + ++ + P
Sbjct: 681 LIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN--GQPVLDENGQPEIKFKGVRPM 738
Query: 785 ---AALHKDLERTPEDSHSN--VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
AA + ++ D + V + G +L V+E+G+GKR LS + G++
Sbjct: 739 GRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTSLSEYPTKGRGTQGVVS 797
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
K S +R +V VG + E DE ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 798 IKVS--ERNGSV--VG--AVQVAEGDE-FMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
Query: 900 LELSGKIQSASLISVTEPETDL 921
+ I E E++L
Sbjct: 851 TSEGESVVGLQRIDEIE-ESEL 871
Score = 115 (45.5 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 39/154 (25%), Positives = 79/154 (51%)
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TT 714
R AAG V+ + L+DG+++ S+I V + GD ++ +T NGY K+ SL+ + + T
Sbjct: 740 RTAAG---VRGMKLADGDQVVSLI-VPKTEGD--VLTVTENGYGKRTSLSEYPTKGRGTQ 793
Query: 715 GIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+++I++ G + V+ D+ + M + G ++ + + + RNT+G +R
Sbjct: 794 GVVSIKVSERNGSVVGAVQVAEGDEFM-MITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+G+ + + I +L PE + V+ +
Sbjct: 853 EGESVVGLQRIDEIEESEL---PEGEEALVENDA 883
Score = 59 (25.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 36/131 (27%), Positives = 62/131 (47%)
Query: 447 KLSQ-VKERRHIVEGIMVGLDNLDRV-IRIVREAPSNSTASAALKDEFKLSEKQAD---- 500
K+++ VKE++ VEGI D D+ +RIV E ++ L + + ++ Q
Sbjct: 275 KIAELVKEKK--VEGISALRDESDKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGIN 332
Query: 501 -AILDMNLRRLTMLER--KKFVDESKTLMEQ--ILKLEELLSSRKNILQLIE------QE 549
LD +L L+ K FVD + ++ + I +L + R +IL+ + E
Sbjct: 333 MVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKA-RERAHILEGLALALANIDE 391
Query: 550 VIELKNRFSTP 560
+IEL R +TP
Sbjct: 392 IIELIRRAATP 402
>UNIPROTKB|Q74H88 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 1117 (398.3 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 214/402 (53%), Positives = 286/402 (71%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR L+AM+++G KP+KK ARVV
Sbjct: 11 VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD A YD++VRMAQDFSLRYPL+ G GNFGS+D D AAMRYTE R+E L
Sbjct: 71 GDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQL 130
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGE 266
+ LL D++++TV+ PN+D S E NG+SGIAVGMATNIPPHNL E
Sbjct: 131 AHE-LLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLTE 189
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+++ + A I NP + +ELL +PGPDFPTGG I G GIL YRTGRG + +R + +E
Sbjct: 190 VINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASIE 249
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
K++R +I+ EIPYQ NK+ L+ KIAELV K L+GISDIRDESDR GMRIVI+LK
Sbjct: 250 T-HKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R +P +++N LY+ T +Q+SF NM+ I+ G+P+ + L++ + F+D R +V RR F
Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
L + + R HI+EG + LD LD VI ++R + + + A L
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGL 410
Score = 450 (163.5 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 113/325 (34%), Positives = 181/325 (55%)
Query: 459 EGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKF 518
EG+M GL + + +R + P + S K +L+E QA IL++ L RLT LER K
Sbjct: 408 EGLMSGLFSDEEWLRKMG-LPLPAIHSQYQKP-VRLTEVQAQEILNLRLHRLTGLERDKI 465
Query: 519 VDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDI 578
+ E +++ I +L+E+L+S IL++I E+ ELK +F R + + D S ++ D
Sbjct: 466 LQEYDDILKYIARLKEILASEAEILKIIVGELRELKEKFGDERRTEIVDR-SAEISLEDT 524
Query: 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF 638
I +++++ +S GY+KR + + Q RG GK+ K + D + V + D +L+F
Sbjct: 525 IVEEDVVVTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFF 584
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG 698
+D G VY + Y+IPE R G +V +L+L + E+IT+I+ V F D+ ++M T G
Sbjct: 585 TDAGKVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLG 644
Query: 699 YIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS 758
+KK L +++IR+ GIIA+ L GD+L V V +AS+NG I D R
Sbjct: 645 VVKKSPLREYANIRSGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARP 704
Query: 759 LSRNTRGSVAMRLKDGDKMASMDII 783
+ R +RG M L+D D + M+II
Sbjct: 705 MGRVSRGVRGMSLEDDDVVIGMEII 729
Score = 91 (37.1 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
++G + V+E+G GKR L +R G+I K + + VV D E+
Sbjct: 733 ATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGC----VVDIMQVTD-EN 787
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D ++L++ G + RI V S+ R +GV LM E + +I + + ++ + D
Sbjct: 788 D--LMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDD 841
Score = 83 (34.3 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 29/126 (23%), Positives = 61/126 (48%)
Query: 565 LEDADSGQLDDIDII-PN--DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-- 619
LED D + ++II PN + ++E G+ KR + + + +Q+RG GK + ++
Sbjct: 717 LEDDDV--VIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRG--GKGIITIKTTE 772
Query: 620 -NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
N + D + + ++ +D+G + + RN G V++++ ERI +
Sbjct: 773 RNGCVVDIMQVTDENDLMLITDQGKILRIPVAQFSVIGRNTQG---VRLMTAEQNERIVA 829
Query: 679 IIPVSE 684
+ ++E
Sbjct: 830 VAKLAE 835
Score = 81 (33.6 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 43/180 (23%), Positives = 81/180 (45%)
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DD++ ++ ++ S +I++ + R ++ K GD+ + +I+ + LE T
Sbjct: 470 DDILKYIARLKEILASEAEILKIIVGELR---ELKEKFGDERRT-EIVDRSAEISLEDTI 525
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ +V ++ VS +G+ KR +S +R G G K ED + +FV
Sbjct: 526 VEE--DV-------VVTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVAS 576
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG-VILMRLELSGKIQSASLISV 914
S + ++ + +G V +IKV +I R RG I+ L L Q +++SV
Sbjct: 577 --------SKDFMLFFTDAGKVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSV 628
Score = 78 (32.5 bits), Expect = 3.2e-165, Sum P(3) = 3.2e-165
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 816 SGHGKRVPLSSFRKLPLNRV--GLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
S +GK + P+ RV G+ G +D V+G + + + V++
Sbjct: 689 SKNGKSIRFHEDDARPMGRVSRGVRGMSLEDDD-----VVIGMEIINPNATGSTIFTVTE 743
Query: 874 SGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPETDLFLPSTSDKL 930
+G R ++ + +Q+R +G+I ++ E +G + ++ VT+ E DL L + K+
Sbjct: 744 NGFGKRTELDEYRVQSRGGKGIITIKTTERNGCV--VDIMQVTD-ENDLMLITDQGKI 798
Score = 63 (27.2 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ + G K+ PL + + G+I D+L AV + DG D V+
Sbjct: 637 IIMATRLGVVKKSPLREYANIRSG--GIIAVNLDDGDKLIAVALT------DGRQD--VL 686
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
L S++G R D R +RGV M LE + +I+ + +F
Sbjct: 687 LASKNGKSIRFHEDDARPMGRVSRGVRGMSLEDDDVVIGMEIINPNATGSTIF 739
Score = 60 (26.2 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 25/120 (20%), Positives = 55/120 (45%)
Query: 665 VQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLV 722
V+ +SL D + + + ++ A + +T NG+ K+ L+ + S GII I+
Sbjct: 712 VRGMSLEDDDVVIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTT 771
Query: 723 P--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
G + ++ +DL+ + Q G ++ + RNT+G M + +++ ++
Sbjct: 772 ERNGCVVDIMQVTDENDLMLITDQ-GKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAV 830
>TIGR_CMR|GSU_0004 [details] [associations]
symbol:GSU_0004 "DNA gyrase, A subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 1117 (398.3 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 214/402 (53%), Positives = 286/402 (71%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR L+AM+++G KP+KK ARVV
Sbjct: 11 VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD A YD++VRMAQDFSLRYPL+ G GNFGS+D D AAMRYTE R+E L
Sbjct: 71 GDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQL 130
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGE 266
+ LL D++++TV+ PN+D S E NG+SGIAVGMATNIPPHNL E
Sbjct: 131 AHE-LLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLTE 189
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+++ + A I NP + +ELL +PGPDFPTGG I G GIL YRTGRG + +R + +E
Sbjct: 190 VINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASIE 249
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
K++R +I+ EIPYQ NK+ L+ KIAELV K L+GISDIRDESDR GMRIVI+LK
Sbjct: 250 T-HKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R +P +++N LY+ T +Q+SF NM+ I+ G+P+ + L++ + F+D R +V RR F
Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
L + + R HI+EG + LD LD VI ++R + + + A L
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGL 410
Score = 450 (163.5 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 113/325 (34%), Positives = 181/325 (55%)
Query: 459 EGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKF 518
EG+M GL + + +R + P + S K +L+E QA IL++ L RLT LER K
Sbjct: 408 EGLMSGLFSDEEWLRKMG-LPLPAIHSQYQKP-VRLTEVQAQEILNLRLHRLTGLERDKI 465
Query: 519 VDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDI 578
+ E +++ I +L+E+L+S IL++I E+ ELK +F R + + D S ++ D
Sbjct: 466 LQEYDDILKYIARLKEILASEAEILKIIVGELRELKEKFGDERRTEIVDR-SAEISLEDT 524
Query: 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF 638
I +++++ +S GY+KR + + Q RG GK+ K + D + V + D +L+F
Sbjct: 525 IVEEDVVVTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFF 584
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG 698
+D G VY + Y+IPE R G +V +L+L + E+IT+I+ V F D+ ++M T G
Sbjct: 585 TDAGKVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLG 644
Query: 699 YIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS 758
+KK L +++IR+ GIIA+ L GD+L V V +AS+NG I D R
Sbjct: 645 VVKKSPLREYANIRSGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARP 704
Query: 759 LSRNTRGSVAMRLKDGDKMASMDII 783
+ R +RG M L+D D + M+II
Sbjct: 705 MGRVSRGVRGMSLEDDDVVIGMEII 729
Score = 91 (37.1 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
++G + V+E+G GKR L +R G+I K + + VV D E+
Sbjct: 733 ATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGC----VVDIMQVTD-EN 787
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D ++L++ G + RI V S+ R +GV LM E + +I + + ++ + D
Sbjct: 788 D--LMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDD 841
Score = 83 (34.3 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 29/126 (23%), Positives = 61/126 (48%)
Query: 565 LEDADSGQLDDIDII-PN--DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-- 619
LED D + ++II PN + ++E G+ KR + + + +Q+RG GK + ++
Sbjct: 717 LEDDDV--VIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRG--GKGIITIKTTE 772
Query: 620 -NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
N + D + + ++ +D+G + + RN G V++++ ERI +
Sbjct: 773 RNGCVVDIMQVTDENDLMLITDQGKILRIPVAQFSVIGRNTQG---VRLMTAEQNERIVA 829
Query: 679 IIPVSE 684
+ ++E
Sbjct: 830 VAKLAE 835
Score = 81 (33.6 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 43/180 (23%), Positives = 81/180 (45%)
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DD++ ++ ++ S +I++ + R ++ K GD+ + +I+ + LE T
Sbjct: 470 DDILKYIARLKEILASEAEILKIIVGELR---ELKEKFGDERRT-EIVDRSAEISLEDTI 525
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ +V ++ VS +G+ KR +S +R G G K ED + +FV
Sbjct: 526 VEE--DV-------VVTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVAS 576
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG-VILMRLELSGKIQSASLISV 914
S + ++ + +G V +IKV +I R RG I+ L L Q +++SV
Sbjct: 577 --------SKDFMLFFTDAGKVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSV 628
Score = 78 (32.5 bits), Expect = 3.2e-165, Sum P(3) = 3.2e-165
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 816 SGHGKRVPLSSFRKLPLNRV--GLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
S +GK + P+ RV G+ G +D V+G + + + V++
Sbjct: 689 SKNGKSIRFHEDDARPMGRVSRGVRGMSLEDDD-----VVIGMEIINPNATGSTIFTVTE 743
Query: 874 SGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPETDLFLPSTSDKL 930
+G R ++ + +Q+R +G+I ++ E +G + ++ VT+ E DL L + K+
Sbjct: 744 NGFGKRTELDEYRVQSRGGKGIITIKTTERNGCV--VDIMQVTD-ENDLMLITDQGKI 798
Score = 63 (27.2 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ + G K+ PL + + G+I D+L AV + DG D V+
Sbjct: 637 IIMATRLGVVKKSPLREYANIRSG--GIIAVNLDDGDKLIAVALT------DGRQD--VL 686
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
L S++G R D R +RGV M LE + +I+ + +F
Sbjct: 687 LASKNGKSIRFHEDDARPMGRVSRGVRGMSLEDDDVVIGMEIINPNATGSTIF 739
Score = 60 (26.2 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 25/120 (20%), Positives = 55/120 (45%)
Query: 665 VQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLV 722
V+ +SL D + + + ++ A + +T NG+ K+ L+ + S GII I+
Sbjct: 712 VRGMSLEDDDVVIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTT 771
Query: 723 P--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
G + ++ +DL+ + Q G ++ + RNT+G M + +++ ++
Sbjct: 772 ERNGCVVDIMQVTDENDLMLITDQ-GKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAV 830
>TIGR_CMR|SO_2411 [details] [associations]
symbol:SO_2411 "DNA gyrase, A subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_718001.1
ProteinModelPortal:Q8EEH1 SMR:Q8EEH1 GeneID:1170127
KEGG:son:SO_2411 PATRIC:23524439 Uniprot:Q8EEH1
Length = 919
Score = 1140 (406.4 bits), Expect = 3.1e-166, Sum P(2) = 3.1e-166
Identities = 218/413 (52%), Positives = 303/413 (73%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I P+ + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM EL KP
Sbjct: 3 DLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATN 258
TE R++ L+ LLAD++++TV++VPN+D +++ NG+SGIAVGMATN
Sbjct: 123 TEIRMDKLAH-QLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V ALI +P ++++L++Y+PGPDFPT +I G GI+DAY+TGRGR
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAI 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R EVE ++ +R +I+ EIPYQ NK+ L+EKIAELV++K L+GIS +RDESD+ G
Sbjct: 242 MRALAEVETEENGRER--IIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KRG +V+N+LY T +Q SF NMV + +GQPK LKE+L+ F+ R
Sbjct: 300 MRIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
VV RR F+L + +ER HI+E + V L N+D +I +++ +P+ + A L ++
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQ 412
Score = 499 (180.7 bits), Expect = 3.1e-166, Sum P(2) = 3.1e-166
Identities = 133/436 (30%), Positives = 226/436 (51%)
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
+ L+E+QA AIL++ L RLT LE K + E + L+E I L +L S + ++++I++E+
Sbjct: 447 YYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAGLLFILRSPERLMEVIKEELE 506
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
E+ + R +++ +A+ + D+I +++++ +S GY K + + Q RG G
Sbjct: 507 EILAEYGDARRTVI-NANEIDMSLEDLINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKG 565
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
K K++ D + +V HD +L FSD G +Y + Y++P +R + G P+V +L L+
Sbjct: 566 KVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLA 625
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
DGERIT+I+PV E+A D++++M T NG +KK +L +S+ R GIIA+ L GD+L V
Sbjct: 626 DGERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVD 685
Query: 732 CCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
DD + + S G V+ + + L N G+ + + ++ + P
Sbjct: 686 ITNGDDEIMLFSNEGKVVRFKEGEEVAVLDEN--GNPVLDEEGNPQINFKGVRPMGRGAT 743
Query: 791 ------LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844
LE V G +L V+E+G+GKR LS + G++ K S
Sbjct: 744 GVRGIKLEEGQRVVSLIVPKDDGA-ILTVTENGYGKRTELSEYPSKSRATKGVVSIKVS- 801
Query: 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
+R AV VG + G +DE ++L+S GT+ R +SI R +GV ++R
Sbjct: 802 -ERNGAV--VG--AVQVGGNDE-IMLISDKGTLVRTPANGVSIIGRNTQGVTIIRTASDE 855
Query: 905 KIQSASLISVTEPETD 920
K+ I + + D
Sbjct: 856 KVVGLQRIDEIQGDED 871
Score = 117 (46.2 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 33/123 (26%), Positives = 61/123 (49%)
Query: 578 IIPNDE-MLLAISEKGYVKRMKPNTFNLQNRGTIGK-SVGKLRVNDAMSDFIVCRAHDHV 635
I+P D+ +L ++E GY KR + + + ++R T G S+ N A+ + +D +
Sbjct: 760 IVPKDDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEI 819
Query: 636 LYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLT 695
+ SD+G + A + RN G +++ + SD E++ + + E GD+ V L
Sbjct: 820 MLISDKGTLVRTPANGVSIIGRNTQGVTIIR--TASD-EKVVGLQRIDEIQGDEDEVELD 876
Query: 696 MNG 698
NG
Sbjct: 877 ENG 879
>UNIPROTKB|Q89L52 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_771336.2
ProteinModelPortal:Q89L52 GeneID:1052360 KEGG:bja:bll4696
PATRIC:21193036 BioCyc:BJAP224911:GJEJ-4729-MONOMER Uniprot:Q89L52
Length = 884
Score = 1135 (404.6 bits), Expect = 2.5e-165, Sum P(3) = 2.5e-165
Identities = 218/396 (55%), Positives = 287/396 (72%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M SY+ Y+MSV++ RALPD RDGLKPVHRRIL++M+E G + K + K ARVVG+V+GK
Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD ++YD++VRMAQDFS+R PLI G GNFGS+D DP AA RYTE RL + A LL
Sbjct: 61 YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALA-LL 119
Query: 213 ADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLC 272
ADID+DTV+F PN+D ++ E NGA GIAVGMATNIPPHNLGE++D
Sbjct: 120 ADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACV 179
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
ALI NP T+ EL+ +PGPDFPTGG+I+G GI AY GRG I +RGK +E + +
Sbjct: 180 ALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETI--RK 237
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
+R +II EIPYQ NK+ +VE+IAELV+ K ++GI D+RDESDR G R+VIELKR A
Sbjct: 238 EREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVAD 297
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
+V+N LYR T LQ+SF NMV + G+P+ M LK++L F+DFR VV RR +F L++ +
Sbjct: 298 VVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKAR 357
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
+R HI+ G+ + + N+D +IR++R +P +TA L
Sbjct: 358 DRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTL 393
Score = 434 (157.8 bits), Expect = 2.5e-165, Sum P(3) = 2.5e-165
Identities = 101/295 (34%), Positives = 169/295 (57%)
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
+LS +QA AILD+ L+RLT L R + DE L +I ++L SR+ +L +I+ E+ E
Sbjct: 424 RLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTELAE 483
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+K F+TPR +++ + + G+++D D+I ++M++ +S GYVKR+ + + Q RG G+
Sbjct: 484 VKAEFATPRRTVIMEQE-GEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGR 542
Query: 613 SVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSD 672
+ + R D +S V H VL+FS RG VY + +++P NA G L+ IL L
Sbjct: 543 AGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQ 602
Query: 673 GERITSIIPVSEFA---GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
GERIT+I+P+ E G+ ++ T G +++ L+ F +R +GIIA++L + +
Sbjct: 603 GERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVD 662
Query: 730 VRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLKDGDKMASMDII 783
V+ CT D V + G I +R + R + G + L +GDK+ S+ I+
Sbjct: 663 VQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAIL 717
Score = 78 (32.5 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
VS +G+ KRVPLS++R G G + ED ++ +FV + V+ S
Sbjct: 518 VSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVAS--------THTPVLFFS 569
Query: 873 QSGTVNRIKVRDISIQARYARGVILMR-LELSGKIQSASLISVTEPET 919
G V + KV + + A ARG L+ L L + +++ + E E+
Sbjct: 570 SRGQVYKEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDES 617
Score = 77 (32.2 bits), Expect = 2.5e-165, Sum P(3) = 2.5e-165
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L VS +G+GKR +R G++ S +R + V F + ED + Q++
Sbjct: 776 VLTVSVNGYGKRTSSYEYRTTGRGGKGIVA--MSVNNRNGNL-VASFPV-EDAD---QIM 828
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVIL 897
LV+ G + R V I I R +GVI+
Sbjct: 829 LVTDKGQLIRCPVEGIRIAGRSTQGVIV 856
Score = 71 (30.1 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 23/114 (20%), Positives = 50/114 (43%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVC---RAH 632
+++ ++++L +S GY KR + RG GK + + VN+ + +
Sbjct: 767 VEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRG--GKGIVAMSVNNRNGNLVASFPVEDA 824
Query: 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
D ++ +D+G + I R+ G V + ++ E + S+ ++E A
Sbjct: 825 DQIMLVTDKGQLIRCPVEGIRIAGRSTQG---VIVFDTAEDEHVVSVEHITEEA 875
Score = 66 (28.3 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 48/203 (23%), Positives = 89/203 (43%)
Query: 592 GYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
G V+R K + F +++ G I KL N+A+ D +C D VL G
Sbjct: 631 GNVRRNKLSDFVDVRRSGIIAM---KLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVT 687
Query: 651 KIPECT-RNAAGTPLVQILSLSDGERITS--IIPVSEFAGDQFLVMLTMNGYI------K 701
+ T R + G V+ ++L +G+++ S I+ E D+ L M + +
Sbjct: 688 DVRVFTGRTSMG---VRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAE 744
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
+ + + + T+G + QL + ++V + +V S NG +S R+ R
Sbjct: 745 EPAADAEAE-ETSG--SFQLA---QERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGR 798
Query: 762 NTRGSVAMRL--KDGDKMASMDI 782
+G VAM + ++G+ +AS +
Sbjct: 799 GGKGIVAMSVNNRNGNLVASFPV 821
Score = 60 (26.2 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTG-----IIAIQLVPGDELKWVRCCTND-DLV 739
A +Q ++ +++NGY K+ S + RTTG I+A+ + + D D +
Sbjct: 771 AAEQVVLTVSVNGYGKRTSSYEY---RTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQI 827
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
+ + G +I + IR R+T+G + + + + S++ I
Sbjct: 828 MLVTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHI 871
Score = 39 (18.8 bits), Expect = 2.6e-161, Sum P(3) = 2.6e-161
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 866 EQVVL-VSQSGTVNRIKVRDISIQARYARGVILM 898
EQVVL VS +G R + R +G++ M
Sbjct: 773 EQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAM 806
>UNIPROTKB|Q7NIY2 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 TIGRFAMs:TIGR01063 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_924996.1
ProteinModelPortal:Q7NIY2 GeneID:2600452 KEGG:gvi:gvip274
PATRIC:22043559 OMA:PNYDGTR BioCyc:GVIO251221:GH9A-2101-MONOMER
Uniprot:Q7NIY2
Length = 825
Score = 1566 (556.3 bits), Expect = 7.3e-165, Sum P(2) = 7.3e-165
Identities = 319/711 (44%), Positives = 469/711 (65%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
GP R+VP LH EM SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAMHELGL+
Sbjct: 9 GPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAPD 68
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAM 196
+PF+KCARVVG+VLGK+HPHGD AVYD+LVR+ QDFS RYPL+ GHGNFGSID DP AAM
Sbjct: 69 RPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAAM 128
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMA 256
RYTECRL A+ LLA+ID TV F NFD SQ+E NG++GIAVGMA
Sbjct: 129 RYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGMA 188
Query: 257 TNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGR 316
TNIPPHNLGELVD L ALI NPE ++LL +PGPDFPTGG I+G GI +AY TGRG
Sbjct: 189 TNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIREAYLTGRGS 248
Query: 317 ITVRGKTEVELLDSKSKRM-GVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
IT+RG T E + S +R +I+ +PYQ NK+ +EK+AELV ++GISD+RDES+
Sbjct: 249 ITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDESN 308
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R G+R+V+E+KR A P ++ LYRLT LQ++F ++ ++ GQP+ + L+E+L+ FL+F
Sbjct: 309 REGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRELLEQFLEF 368
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
R + + RR ++ L + ER H +EG +V L NL +++++ A + A A L+ + LS
Sbjct: 369 RVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAELEASYGLS 428
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
E+Q++ IL M LRRLT L+R++ E + L E++++L+ L SR+ +L L+++E+ +LK
Sbjct: 429 ERQSEEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRDLKK 488
Query: 556 RFSTPRLSMLEDADSGQLDDI-DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
+ + PR + +E A + L + +I +DE+++ ++ +GYV+R+ F ++R ++V
Sbjct: 489 KHADPRRTCIE-ARTAPLPTLAEITSDDEVVVQLTHRGYVRRIPAAAFERRSRSR--RAV 545
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
+ ND + + R + +L + G YS + +IPE + GTPLV +LS+ GE
Sbjct: 546 SRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTLLSIQ-GE 604
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
+I + + D FLV+LT G IKK+ L+ +++ G++ ++L D+L V T
Sbjct: 605 QIAATFVRENYPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLAT 664
Query: 735 NDDLVAMASQNGMVILSSCDIIR--SLSRNTRGSVAMRLKDGDKMASMDII 783
+ + + G ++ D + ++ R+ G A++L+ G+ +A+M ++
Sbjct: 665 AHSQIVVGTSAGRLLRFVADEAQLPAMGRSALGLQAIKLRRGESLAAMTVV 715
Score = 60 (26.2 bits), Expect = 7.3e-165, Sum P(2) = 7.3e-165
Identities = 38/125 (30%), Positives = 59/125 (47%)
Query: 798 SHSN-VKGSS-GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+HS V G+S G L FV++ ++P + + +GL K + LAA+ VVG
Sbjct: 665 AHSQIVVGTSAGRLLRFVADEA---QLPA-----MGRSALGLQAIKLRRGESLAAMTVVG 716
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG--VILMRLELSGKIQSASLIS 913
+ E +++VS+ G R+K +I +Q R G V L+R E +G A L
Sbjct: 717 --------NGEDLLMVSRLGLGKRLKTGEIRLQERAGLGTPVGLLR-ERNGDSLLAVLAV 767
Query: 914 VTEPE 918
E E
Sbjct: 768 GAEGE 772
>UNIPROTKB|Q8CM44 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P09097 RefSeq:NP_710187.1
ProteinModelPortal:Q8CM44 SMR:Q8CM44 GeneID:1149349
KEGG:lil:LA_0006 PATRIC:22380851 BioCyc:LINT189518:GJBB-6-MONOMER
Uniprot:Q8CM44
Length = 834
Score = 1504 (534.5 bits), Expect = 2.0e-162, Sum P(2) = 2.0e-162
Identities = 296/702 (42%), Positives = 464/702 (66%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R++PVE+ ++M +Y+ Y+MSV++GRALPDVRDGLKPVHRRIL AM+E S +P+ KC
Sbjct: 31 RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 90
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A++VGEV+G +HPHGD +VY++LVRM Q+FSLR PLI G GNFGSID D AA RYTE R
Sbjct: 91 AKIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 150
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPH 262
LE ++E LL DI+++TV+F PN+D+++++ NG+SGIAVGMATNIPPH
Sbjct: 151 LEKVAEE-LLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPH 209
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E +D + A+I NPE T+ E+L+ +PGPDFPT G+I+G G++ AY TG+G I +R K
Sbjct: 210 NLRETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSK 269
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K+ R +++ EIPYQ NK +L+EKI +LV K ++GIS+I D SDR G+R+
Sbjct: 270 VEIE--EKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVE 327
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I +K+ A+ +++N LY++T LQ S+ M+ ILD +PK +KE+L A+ R V+ R
Sbjct: 328 IHIKKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVR 387
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + ++R HI+EG+ + L+N++ VI+++R + + A L F LSE Q+DAI
Sbjct: 388 RTQFDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIRFSLSEVQSDAI 447
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L+RLT LE +K +DE + + + I+ L+++L+ + +++ E+ E+ +++ R
Sbjct: 448 LEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPSRVNEIVCTELQEVGDKYGNKRK 507
Query: 563 S--MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL--R 618
+ +E +S + D+I ++E+++ I+ ++KR+ +TF Q RG GK + L +
Sbjct: 508 TEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRG--GKGIQGLSQK 565
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + HD++++FS+ G VY +AY++P ++ A G L I++L + E I+S
Sbjct: 566 RDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISS 625
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+ D+ L+++T G+IK++ L F +++ +GIIAI L GDEL V T+ D
Sbjct: 626 VFTFRGEDMDKDLLLVTRKGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVESMTDKDE 685
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
V + S+ G+ + +IIR+ R G MRL + D + +
Sbjct: 686 VMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDAIVGL 727
Score = 99 (39.9 bits), Expect = 2.0e-162, Sum P(2) = 2.0e-162
Identities = 31/111 (27%), Positives = 54/111 (48%)
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K G + VSE G+GKR+ F G+ K + ++ GFS+
Sbjct: 729 KYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKN--------GFSVGTGS 780
Query: 863 E-SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
S+++++L++Q G RI DIS R A GV ++ L+ + K+Q +++
Sbjct: 781 VGSEDEIILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKVQDFTVL 831
>TIGR_CMR|CJE_1171 [details] [associations]
symbol:CJE_1171 "DNA gyrase, A subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_179162.1 ProteinModelPortal:Q5HU73 SMR:Q5HU73
STRING:Q5HU73 GeneID:3231680 KEGG:cjr:CJE1171 PATRIC:20044135
BioCyc:CJEJ195099:GJC0-1198-MONOMER Uniprot:Q5HU73
Length = 862
Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
Identities = 344/832 (41%), Positives = 515/832 (61%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++ + GSY+ YSMSV++GRALPD RDGLKPVHRRIL+AM SR F K AR+V
Sbjct: 14 VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G V+G++HPHGD AVYD+LVRMAQDFS+RYP I G GNFGSID D AAAMRYTE ++ L
Sbjct: 74 GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGE 266
S LL DID+DTV+FVPN+D S+ E NG+SGIAVGMATNIPPH+L E
Sbjct: 134 SHE-LLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L+D L L+ + + +L+E+++++ GPDFPTGG+I G GI++AYRTGRGR+ VR KT +E
Sbjct: 193 LIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
K+ + ++I E+PYQTNK+ L+E+IAELV+ K ++GIS++RDES++ G+R+VIELK
Sbjct: 253 ---KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVVIELK 309
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A IV+N+L++ T ++S+F M+ I + +PK L E+L FL R +V+ RR F
Sbjct: 310 REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIF 369
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LDN+D VI +++ + N+TA +L +F LSE QA+AILDM
Sbjct: 370 ELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMK 429
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RLT LER+K +E LM++I +LEE+L S + LI E+ E++++F PR++ +E
Sbjct: 430 LGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIE 489
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D D +D D+IPN+ M++ I+ +GY+KR+ + Q RG GK +D + F
Sbjct: 490 D-DYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
HD +++ +DRG +Y + YKIPE +R A G +V +++L E+I +IIP ++F
Sbjct: 549 FTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD--LVAMASQ 744
+ L T NG +K+ +L+ + +IR+ G+ AI L DEL D+ + A +
Sbjct: 609 ESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGE 668
Query: 745 NGMVI--LSSCD---IIRSLSRNTRGSVAMRL-KDG-------DKMASMDIIPAALH--K 789
+ + + D + S +T+G + + K G K+ + + + K
Sbjct: 669 ENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIK 728
Query: 790 DLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLA 849
E+ E + V + +L +S G GKR +R G+I K + + +
Sbjct: 729 FKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTK-D 787
Query: 850 AVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ VV + + E+ + + L S SG + R+ ++ I R GVI++ +E
Sbjct: 788 LISVV---IVD--ETMDLMALTS-SGKMIRVDMQSIRKAGRNTSGVIVVNVE 833
>UNIPROTKB|Q8A9B6 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HSSP:P09097 RefSeq:NP_809812.1
ProteinModelPortal:Q8A9B6 SMR:Q8A9B6 GeneID:1076273
KEGG:bth:BT_0899 PATRIC:21056597 BioCyc:BTHE226186:GJXV-915-MONOMER
Uniprot:Q8A9B6
Length = 858
Score = 1482 (526.7 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 315/759 (41%), Positives = 473/759 (62%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ + + EEM SYI YSMSV++ RALPDVRDG KPVHRRIL+ M ELG +S KP+KK
Sbjct: 6 RIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VY ++VRMAQ++++RYPL+ G GNFGS+D D AAMRYTE R
Sbjct: 66 ARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPH 262
L L EAM+ D+ ++TV+F PNFD + E NGASGIAVGMATN+PPH
Sbjct: 126 LNKLGEAMM-DDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D A I N E T++EL+ Y+ PDFPTGG I G G+ + Y TGRGR+ +R K
Sbjct: 185 NLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K +++ EIPY NK+ L++ IA+LV +K ++GIS+ DESDR GMRIV
Sbjct: 245 AEIETGQTHDK---IVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I++KR A+ S+V+N LY++TALQ+SF N V ++ G+PK + L+++++ F++ R VV R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + KER HI+EG+++ DN+D VIRI+R A + + A A L + F L+E Q+ AI
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQSRAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
++M LR+LT L + + E + +M+QI LE +L+ + ++++ E++E+K ++ R
Sbjct: 422 VEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGDERR 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + + S + + D +D+M++ IS GY+KR F QNRG +G + R D
Sbjct: 482 SEIVYS-SEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDADF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ H+ +++F+ +G Y + Y+IPE T+N+ G + +L++ + +T+ + V
Sbjct: 541 VEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYLRV 600
Query: 683 -----SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
+E+ +++ T G IKK L +S R G+ AI + D + VR ++
Sbjct: 601 KSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNN 660
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A++NG I +R + R G + L D D ++I KDLE +
Sbjct: 661 EIIIANRNGRAIRFHEAAVRVMGRTATGVRGITL-DND--GQDEVIGMICIKDLET---E 714
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVG 836
S ++ VSE G+GKR + +RK NR G
Sbjct: 715 S-----------VMVVSEQGYGKRSEIEDYRKT--NRGG 740
Score = 100 (40.3 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ VSE G+GKR + +RK NR G G K V S+ + E+D ++
Sbjct: 716 VMVVSEQGYGKRSEIEDYRKT--NRGGK-GVKTMNITEKTGKLVTIKSVTD--END--LM 768
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++++SG R+KV D+ I R +GV L+ LE
Sbjct: 769 IINKSGITIRLKVADVRIMGRATQGVRLINLE 800
>UNIPROTKB|A6V2Q7 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 RefSeq:YP_001347342.1
ProteinModelPortal:A6V2Q7 SMR:A6V2Q7 STRING:A6V2Q7 GeneID:5355666
KEGG:pap:PSPA7_1961 PATRIC:19825727
BioCyc:PAER381754:GHMY-2022-MONOMER Uniprot:A6V2Q7
Length = 921
Score = 1168 (416.2 bits), Expect = 6.8e-159, Sum P(3) = 6.8e-159
Identities = 220/409 (53%), Positives = 304/409 (74%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I+PV + +E+ SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AM ELG KP+
Sbjct: 4 LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNI 259
E R+ L+ LLAD++++TV++VPN+D +++ NG+SGIAVGMATNI
Sbjct: 124 EVRMAKLAHE-LLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D AL+ NP+ T+ EL++Y+PGPDFPT G+I G GI++AYRTGRGRI +
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + VE ++ R +II E+PYQ NK+ L+EKIAELV+ K ++GIS++RDESD+ GM
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIEL+RG +V+N+LY T LQS F N+V ++DGQP+ + LK++L+ F+ R V
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
V RR ++L + +ER HI+EG V L N+D VI +++ +P+ + A L
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERL 411
Score = 299 (110.3 bits), Expect = 6.8e-159, Sum P(3) = 6.8e-159
Identities = 87/312 (27%), Positives = 154/312 (49%)
Query: 479 PSNSTASAALKD-EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
P + L+D ++ LS +QA AIL++ L RLT LE +K + E + ++ I +L +L+
Sbjct: 435 PEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGELIRILT 494
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
+ ++++I +E+ +K F R + + A L D+I ++ ++ IS GY K
Sbjct: 495 NPARLMEVIREELEAVKAEFGDARRTEIV-ASQVDLTIADLITEEDRVVTISHGGYAKSQ 553
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+ Q RG GKS ++ D + +V +H +L FS +G VY R ++IPE +R
Sbjct: 554 PLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLRTFEIPEASR 613
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717
A G PLV +L L +GERIT+++ + L L NG ++ ++
Sbjct: 614 TARGRPLVNLLPLDEGERITAMLQID-------LEALQQNGGADDDLDEAEGAVLEGEVV 666
Query: 718 A---IQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG 774
I+ V G+ + V T + MA+ G V +++ + G +A++L++G
Sbjct: 667 EAAEIEEVEGETAELVAEPTGA-YIFMATAFGTV--KKTPLVQFSRPRSSGLIALKLEEG 723
Query: 775 DKMASMDIIPAA 786
D + + I A
Sbjct: 724 DTLIAAAITDGA 735
Score = 131 (51.2 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 664 LVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723
+V+ + + E T+ + V+E G ++ M T G +KK L FS R++G+IA++L
Sbjct: 665 VVEAAEIEEVEGETAEL-VAEPTG-AYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722
Query: 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
GD L V + S G VI + ++R + RN RG MRL G ++ SM +I
Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISM-LI 781
Query: 784 P 784
P
Sbjct: 782 P 782
Score = 118 (46.6 bits), Expect = 6.8e-159, Sum P(3) = 6.8e-159
Identities = 43/137 (31%), Positives = 66/137 (48%)
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
SG +L SE G GKR PLS F + G+I +R A+ A +
Sbjct: 784 SGAQILTASERGFGKRTPLSKFPRRGRGGQGVIA--MVTNERNGALIA-----AVQVQEG 836
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE--TDLFL 923
E+++L+S GT+ R +V ++S+ +R +GV L++L S ++ L V EP D L
Sbjct: 837 EEIMLISDQGTLVRTRVDEVSLSSRNTQGVTLIKLA-SDEVL-VGLERVQEPSGGDDEEL 894
Query: 924 PSTSD--KLATESGVSE 938
P + + ES SE
Sbjct: 895 PEGEEGAEALGESAESE 911
Score = 102 (41.0 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 44/149 (29%), Positives = 70/149 (46%)
Query: 781 DIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840
+++ AA ++E ++ V +G ++ + G K+ PL F + P + GLI
Sbjct: 664 EVVEAA---EIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSR-PRSS-GLIAL 718
Query: 841 KFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
K D L A + DG ++V+L S +G V R + I R ARGV MRL
Sbjct: 719 KLEEGDTLIAAAIT------DGA--KEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRL 770
Query: 901 ELSGKIQSASLISVTEPETDLFLPSTSDK 929
GK Q LIS+ PE+ + + S++
Sbjct: 771 ---GKGQQ--LISMLIPESGAQILTASER 794
Score = 92 (37.4 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 50/236 (21%), Positives = 101/236 (42%)
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+E+ + G+ ++ P + + G VK+ F+ + R + G KL D +
Sbjct: 671 IEEVE-GETAELVAEPTGAYIFMATAFGTVKKTPLVQFS-RPRSS-GLIALKLEEGDTLI 727
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ V+ FS G V + RNA G V+ + L G+++ S++ + E
Sbjct: 728 AAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML-IPE 783
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDE----LKWVRCCTNDDLVA 740
+G Q L + G+ K+ L+ F G I +V + + V+ ++++
Sbjct: 784 -SGAQILTA-SERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIML 841
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
++ Q G ++ + D + SRNT+G ++L + + ++ + D E PE
Sbjct: 842 ISDQ-GTLVRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPE 896
Score = 47 (21.6 bits), Expect = 2.1e-151, Sum P(3) = 2.1e-151
Identities = 31/122 (25%), Positives = 52/122 (42%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+LF S +G R S R + N G+ G + +L ++ + ES Q++
Sbjct: 739 MLF-SSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISMLIP--------ESGAQIL 789
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPETDLFLPSTSD 928
S+ G R + + R +GVI M E +G + +A + V E E ++ L S
Sbjct: 790 TASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA--VQVQEGE-EIMLISDQG 846
Query: 929 KL 930
L
Sbjct: 847 TL 848
Score = 47 (21.6 bits), Expect = 1.9e-121, Sum P(2) = 1.9e-121
Identities = 21/88 (23%), Positives = 36/88 (40%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
+S G+ K PL++++ G ED + + V S ++L S
Sbjct: 544 ISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVAN--------SHATLLLFS 595
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRL 900
G V ++ +I +R ARG L+ L
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNL 623
Score = 43 (20.2 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 414 GILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL-SQVKERRHIVEGIMVGLDNLDRVI 472
G+ DG K E QA L+ R + KL S+ +E +++ ++ L N R++
Sbjct: 443 GLRDG--KYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLM 500
Query: 473 RIVRE 477
++RE
Sbjct: 501 EVIRE 505
>TIGR_CMR|SPO_2051 [details] [associations]
symbol:SPO_2051 "DNA gyrase, A subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_167281.1 ProteinModelPortal:Q5LRS4
SMR:Q5LRS4 GeneID:3193149 KEGG:sil:SPO2051 PATRIC:23377441
Uniprot:Q5LRS4
Length = 891
Score = 1103 (393.3 bits), Expect = 1.3e-157, Sum P(3) = 1.3e-157
Identities = 221/467 (47%), Positives = 313/467 (67%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + EM SY+ Y+MSV++ RA+PD+RDGLKPVHRRIL+AMHE G KP++K AR V
Sbjct: 5 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+A+YD+LVRMAQDFS+ PL+ G GNFGS+D D AAMRYTE R++
Sbjct: 65 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGE 266
+ A LL+DID++TV+F N+D +E NGA GIAVGMATNIPPHNLGE
Sbjct: 125 A-AFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 183
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+VD ALI +P+ T ++L++Y+PGPDFPTGG+++G G AY GRG + +R KT VE
Sbjct: 184 VVDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 243
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
L + R +I+ EIPYQ NK+ ++EKIAE V K ++G++ ++DESDR+G+R+V+ELK
Sbjct: 244 EL--RKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELK 301
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A P +V+N LYR + +Q+SF CNM+ + G+P+Q+ L+ L F+DFR VV RR
Sbjct: 302 RDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAH 361
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + +ER H++ G+ V + N+D V+ +R S+A AA E ++ + A +
Sbjct: 362 DLRKARERSHVLCGLAVAVSNVDEVVATIR-----SSADAADAREKLMTRRWPAADIAAY 416
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSR-KNILQLIEQEVIE 552
LR + K D + L E ++ +L R + + QL +EV +
Sbjct: 417 LRLIDDPLSKMNEDGTYNLTE--VQARAILDLRLQRLTQLGVKEVTD 461
Score = 401 (146.2 bits), Expect = 1.3e-157, Sum P(3) = 1.3e-157
Identities = 93/296 (31%), Positives = 167/296 (56%)
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
+ L+E QA AILD+ L+RLT L K+ DE + L +I + E+L SR+ I+ +I E+
Sbjct: 433 YNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERIMGIIADELR 492
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
E++ +F+ PR + + D SG ++D D+I ++M++ ++ GY+KR F Q RG G
Sbjct: 493 EVREQFAVPRRTEIVDW-SGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKG 551
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
S + + D ++ V H +L+F+ G+VY + +++P+ R G +V IL +
Sbjct: 552 LSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIP 611
Query: 672 DGERITSIIPVS--EFAGDQF-LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELK 728
G I +I+PV + D +V T G +++ +L+ F++++ G IA++L EL
Sbjct: 612 TGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMKLPEDVELV 671
Query: 729 WVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
R C+ +D V + + +G I + D+ R++ G +RL++GD++ SM +I
Sbjct: 672 NARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSMSVI 727
Score = 75 (31.5 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 25/109 (22%), Positives = 48/109 (44%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
V+ G+ KR PL+ FR GL G + ED + +FV + Q++ +
Sbjct: 528 VTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVAN--------THTQLLFFT 579
Query: 873 QSGTVNRIKVRDISIQARYARGVILMR-LELSGKIQSASLISVTEPETD 920
G V ++K + R +G ++ L + + A+++ V P+ +
Sbjct: 580 TDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEE 628
Score = 69 (29.3 bits), Expect = 1.3e-157, Sum P(3) = 1.3e-157
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L ++ +G GK LSS P+ G G K SA R F + D+Q+
Sbjct: 785 ILTITVTGLGK---LSSSHDYPVRGRGGQGVKAISAGPR-GGTLAASFPVL----MDDQI 836
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+L + G R+ V IS ++R A GV + ++ S + I+
Sbjct: 837 MLATSGGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARIA 881
Score = 55 (24.4 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIG-KSVGK-LRVNDAMSDFIVCRAHDHVLYFSD 640
+++L I+ G K + + ++ RG G K++ R + F V D ++ +
Sbjct: 783 DLILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPRGGTLAASFPVLM-DDQIMLATS 841
Query: 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
G I +R+A G V++ + S GE + S+ ++E GD+
Sbjct: 842 GGQSIRVPVEGISFRSRSAGG---VRVFNTSKGEEVVSVARIAE-QGDE 886
>UNIPROTKB|Q07702 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0046677 EMBL:BX842572
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
EMBL:L27512 EMBL:L11919 EMBL:X72872 PIR:D70698 RefSeq:NP_214520.1
RefSeq:NP_334415.1 RefSeq:YP_006513318.1 PDB:3IFZ PDB:3ILW PDB:3UC1
PDBsum:3IFZ PDBsum:3ILW PDBsum:3UC1 ProteinModelPortal:Q07702
SMR:Q07702 EnsemblBacteria:EBMYCT00000001336
EnsemblBacteria:EBMYCT00000068956 GeneID:13315979 GeneID:887105
GeneID:922437 KEGG:mtc:MT0006 KEGG:mtu:Rv0006 KEGG:mtv:RVBD_0006
PATRIC:18121736 TubercuList:Rv0006 BindingDB:Q07702
ChEMBL:CHEMBL4165 EvolutionaryTrace:Q07702 Uniprot:Q07702
Length = 838
Score = 1457 (517.9 bits), Expect = 1.5e-155, Sum P(2) = 1.5e-155
Identities = 309/718 (43%), Positives = 447/718 (62%)
Query: 75 TVGPNVS-PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 133
T+ P+ S RI PV++ +EM SYI Y+MSV++GRALP+VRDGLKPVHRR+L+AM + G
Sbjct: 5 TLPPDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGF 64
Query: 134 SSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA 193
+ K AR V E +G +HPHGD ++YDSLVRMAQ +SLRYPL+ G GNFGS DP
Sbjct: 65 RPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 124
Query: 194 AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAV 253
AAMRYTE RL L+ ML +ID++TV+F+PN+D +E NG+ GIAV
Sbjct: 125 AAMRYTEARLTPLAMEML-REIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAV 183
Query: 254 GMATNIPPHNLGELVDVLCALIHNPEA----TLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GMATNIPPHNL EL D + + N +A TL ++ + GPDFPT GLI+G+ G DA
Sbjct: 184 GMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADA 243
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRG I +RG EVE DS+ R ++I E+PYQ N + IAE V + L GIS+
Sbjct: 244 YKTGRGSIRMRGVVEVEE-DSRG-RTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISN 301
Query: 370 IRDES-DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEV 428
I D+S DR G+RIVIE+KR A +V+N+LY+ T LQ+SF NM+ I+DG P+ + L ++
Sbjct: 302 IEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQL 361
Query: 429 LQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
++ ++D + V+ RR ++L + ER HI+ G++ LD LD VI ++R + + A A L
Sbjct: 362 IRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGL 421
Query: 489 KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQ 548
+ + E QA AILDM LRRL LER++ +D+ + +I LE++L+ + ++
Sbjct: 422 IELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRD 481
Query: 549 EVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRG 608
E+ E+ +R R + + AD G + D D+I +++++ I+E GY KR K + + Q RG
Sbjct: 482 ELAEIVDRHGDDRRTRIIAAD-GDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRG 540
Query: 609 TIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL 668
G L+ +D ++ F VC HD +L+F+ +G VY A+AY +PE +R A G + +L
Sbjct: 541 GKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLL 600
Query: 669 SLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELK 728
+ ERI +I + + +LV+ T NG +KK L F S R+ GI+A+ L DEL
Sbjct: 601 AFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELV 660
Query: 729 W-VRCCTNDDLVAMASQNGMVI-LSSCD-IIRSLSRNTRGSVAMRLKDGDKMASMDII 783
V C DDL+ + S NG I S+ D +R + R T G MR D++ S++++
Sbjct: 661 GAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLVSLNVV 717
Score = 81 (33.6 bits), Expect = 1.5e-155, Sum P(2) = 1.5e-155
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRV--GLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S+G LL VS +G R + P+ R G+ G +F+ +DRL ++ VV +G
Sbjct: 666 SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLVSLNVV-----REG 720
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS-GKIQSASLI 912
+++ + G R + + +Q R +GV+ + + G++ A ++
Sbjct: 721 T---YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV 768
Score = 71 (30.1 bits), Expect = 1.7e-154, Sum P(2) = 1.7e-154
Identities = 26/94 (27%), Positives = 40/94 (42%)
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
G +LL + G+ KR + + P+ G G DR +VG + +D D
Sbjct: 720 GTYLLVATSGGYAKRTAIEEY---PVQGRGGKGVLTVMYDRRRGR-LVGALIVDD---DS 772
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ V+ G V R R + R +GV LM L
Sbjct: 773 ELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL 806
>TIGR_CMR|NSE_0958 [details] [associations]
symbol:NSE_0958 "DNA gyrase, A subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 RefSeq:YP_506822.1
ProteinModelPortal:Q2GCH4 STRING:Q2GCH4 GeneID:3932182
KEGG:nse:NSE_0958 PATRIC:22681889
BioCyc:NSEN222891:GHFU-960-MONOMER Uniprot:Q2GCH4
Length = 869
Score = 1073 (382.8 bits), Expect = 9.1e-154, Sum P(2) = 9.1e-154
Identities = 213/468 (45%), Positives = 323/468 (69%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV L +E+ SY++Y+MSV++ RA+PDVRDGLKPVHRRIL++M+EL KP++K A
Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RV+GEV+GK+HPHGD+A+YD+LVRMAQ+FSL PLI G GNFGSID DPAAAMRYTE RL
Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
E +S+ LL D+ +++V+F N+D S+ E NG +G+AVGMATN+P HN
Sbjct: 124 EYISK-FLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHN 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+++ + N T ELL+ + GPDFPTGGLI+G GI ++ +GRG I +R KT
Sbjct: 183 LSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKT 242
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E ++++ + +I+ E+PYQ NK+ L+E IA LV+ K LD ISD+RDES++ G+R+VI
Sbjct: 243 HFE--ETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVI 299
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVER 442
ELKRGA +V+N L+++T LQ+S+S NMV +LD +P M L+++L AF+ R V+ R
Sbjct: 300 ELKRGASFEVVLNQLFQMTQLQTSYSTNMV-LLDNMRPTLMSLRDILAAFIAHRKEVISR 358
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ +E+ +++ + V + N+D V+ I++ + N A AL + +++ + +
Sbjct: 359 RTEFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL 418
Query: 503 LDM--NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQ 548
++ N++ L E K +SK ++E +K++ + ++ K QL+ +
Sbjct: 419 VETISNIKLLNR-EYKLSTAQSKAILE--MKMQRITNTEKG--QLVAE 461
Score = 448 (162.8 bits), Expect = 9.1e-154, Sum P(2) = 9.1e-154
Identities = 134/466 (28%), Positives = 235/466 (50%)
Query: 468 LDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLME 527
+D + ++ E SN L E+KLS Q+ AIL+M ++R+T E+ + V E M+
Sbjct: 411 IDEELELLVETISNIKL---LNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMD 467
Query: 528 QILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM-LEDADSGQLDDIDIIPNDEMLL 586
+ + +L S + +I +E+ E+K ++ R S+ L++ ++ ++ D+I +++++
Sbjct: 468 IVKECASILGSEAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEE-DLIEREQVVV 526
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+ GY+KR+ + + +Q RG G+ ++ D ++ V HD +L+FS RG VY
Sbjct: 527 TATYSGYIKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYK 586
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+AYK+P + G LV I L+D E ITSI+P+ + L+ LT G +K+ S++
Sbjct: 587 LKAYKLPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAEN-LIFLTAQGKVKRNSMS 645
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRG 765
F+ + G +AI+L D L V+ N+D V +++++G I +R L SR++ G
Sbjct: 646 DFAYVPANGKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEG 705
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS-----SGP------WLLFVS 814
A+ L D S+ I L+K + +PED +K P ++L V+
Sbjct: 706 VKAITLGKDDNAISLSI----LNKQV-LSPEDKAEYMKTKFFERIQNPENHEEQFVLTVT 760
Query: 815 ESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQS 874
E+G+GK +R VG+I S +R V V F + ++LV+
Sbjct: 761 ENGYGKITSSYEYRITNRGGVGIIN--ISTSERNGKV-VSSFKVT----LSNHIMLVTNR 813
Query: 875 GTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
G V RI+ +I + R +GV L + ++ AS+ V E E D
Sbjct: 814 GQVIRIEANNIPVLGRNTQGVRLFSIRAEERV--ASVTEVEEVEDD 857
Score = 71 (30.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL-KWVRC--CTNDDLVAMASQ 744
+QF++ +T NGY K S + G+ I + + K V T + + + +
Sbjct: 753 EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTN 812
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
G VI + I L RNT+G ++ +++AS+ + D E T E+ N
Sbjct: 813 RGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVEDDDSETT-ENCQDN 868
Score = 50 (22.7 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
S+ K + ++ V+ G R+ ++ L N G+ + AE+R+A+V V
Sbjct: 797 SSFKVTLSNHIMLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVED 856
Query: 860 EDGESDE 866
+D E+ E
Sbjct: 857 DDSETTE 863
>UNIPROTKB|Q3KMH3 [details] [associations]
symbol:gyrA_1 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_327997.1 ProteinModelPortal:Q3KMH3 STRING:Q3KMH3
GeneID:3687233 KEGG:cta:CTA_0207 PATRIC:32022280
BioCyc:CTRA315277:GI4C-249-MONOMER Uniprot:Q3KMH3
Length = 836
Score = 1433 (509.5 bits), Expect = 3.9e-153, Sum P(2) = 3.9e-153
Identities = 294/705 (41%), Positives = 441/705 (62%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP L EEM SY+ YSMSV++ RALPD RDGLKP RRIL+AM +L L+ +KCA
Sbjct: 8 IVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
++ G+ G +HPHG++ +Y +LVRMAQD+++RYPL+ G GNFGSID DPAAAMRYTE RL
Sbjct: 68 KICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTEARL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
S LL D+D+DTV+ VPN+DE++ E NG+SGIAVGMATNIPPHN
Sbjct: 128 TH-SAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ ++ N + +++++LE MPGPDFPTGG+I G GI Y TGRG++ +R +
Sbjct: 187 LGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLRARM 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
VE +S +R +I+ E+PY NKS L+E+IAEL+ KTL GISD+RDESD+ G+R+V+
Sbjct: 247 HVEE-NSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRVVL 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+G +V+N LY+ T +Q +F NM+ + P+ M + ++ A++ R V++RR
Sbjct: 306 ELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
R++L++ + R HI+EG + L +D V++ +RE+ + A L + F SE QA AIL
Sbjct: 366 TRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQALAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
++ L +LT LE K E L+E+I ++L+ + + +I +E+ EL TPR +
Sbjct: 426 ELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRT 485
Query: 564 MLEDADSGQLDDI-DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-ND 621
+E D+G + DI DII ++ +++ IS YVKRM F Q RG G + ++ +D
Sbjct: 486 RIE-MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS-LSDGERITSII 680
+ D++L F++ G Y + +++PE R A G P++ L + GE++ +++
Sbjct: 545 FLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERKAKGKPIINFLEGIRPGEQVAAVL 604
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD-LV 739
V F ++L + T G +KKVSL+ F S R GI A+++ GDEL R ND+ V
Sbjct: 605 NVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKV 664
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDII 783
+ ++ GM + D +R + R RG + LK + D + S ++
Sbjct: 665 MLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVV 709
Score = 82 (33.9 bits), Expect = 3.9e-153, Sum P(2) = 3.9e-153
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L V ++G GKR + FR+ NR G +G + ++ V+G D +S ++
Sbjct: 715 VLVVCDNGFGKRSLVCDFRET--NR-GSVGVRSIVINQRNGD-VLGAISVTDCDS---IL 767
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV-TEP-ETD 920
L+S G RI ++D+ + R +GV L+ L + + +S+ TE ET+
Sbjct: 768 LMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVETE 820
>UNIPROTKB|Q9RT53 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
EMBL:AE000513 GenomeReviews:AE000513_GR GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E75338 RefSeq:NP_295636.1
ProteinModelPortal:Q9RT53 GeneID:1798351 KEGG:dra:DR_1913
PATRIC:21631472 BioCyc:DRAD243230:GH46-2282-MONOMER Uniprot:Q9RT53
Length = 812
Score = 1412 (502.1 bits), Expect = 5.1e-151, Sum P(2) = 5.1e-151
Identities = 295/705 (41%), Positives = 451/705 (63%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ E+ ++I Y+M+V++ RALPDVRDG+KPV RRI++AM + GL+S K A
Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+ ++HPHGD+++YD++VR+ Q +++RY L+ GNFGS+D D AAAMRYTE R+
Sbjct: 64 SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
++E +LAD++++TV+ PN+DE+ E NGASGIAVGMATNIPPHN
Sbjct: 124 TKVAEE-ILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L ALI NP TL E++ ++ GPDFPTGG I +GI +AY TG + VRGK
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKA 241
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIV 382
+E + K+ R +II EIPYQ NK+ L++ I+ + + + I +RDESDR +RIV
Sbjct: 242 RIE--EGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIV 299
Query: 383 IELKRGADP--SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IELKR A ++V+N LY+ T LQSS++ + I++G+P+ + L + ++ FLD R VV
Sbjct: 300 IELKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVV 359
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L + KER H++EG++ LD++D VI ++R + + + A L F LSE QA
Sbjct: 360 TRRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQ 419
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RL LER+K E L + I +LE +L K + + I++E+ ++++R+
Sbjct: 420 AILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDA 479
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R S++ + + ++ D+I ++M++ ++ GYVKR + Q RG G S GKLR
Sbjct: 480 RRSVITELEE-DINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREE 538
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSI 679
DA + V HD++L+F+D+G V+ + Y +PE R+A GT + +L L D E I S+
Sbjct: 539 DANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDDENIASV 598
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ VS F + T +G IKK + +++I + G+IAI L PGDEL V + D V
Sbjct: 599 LSVSGFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGDDV 658
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+A++NG + ++R R T+G + +RL++GD++ SM ++P
Sbjct: 659 VLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDEVVSMALVP 703
Score = 83 (34.3 bits), Expect = 5.1e-151, Sum P(2) = 5.1e-151
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
LL +SE G GKR +S + +G+I D+ + +LA ++E +V
Sbjct: 711 LLAISECGLGKRTKVSDYPSKGRGGLGVI--TLDVTDKTGKLV----TLAHVAGNEELMV 764
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRL 900
L ++ GTV R +V ++ + R A+GV ++ +
Sbjct: 765 L-TEKGTVIRTRVEEVRVTGRNAQGVKVINI 794
Score = 70 (29.7 bits), Expect = 1.2e-149, Sum P(2) = 1.2e-149
Identities = 24/111 (21%), Positives = 50/111 (45%)
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
G ++ +++G R + R G+IG + D VV +L + +
Sbjct: 655 GDDVVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDE-----VVSMALVPGNDEEG 709
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTE 916
+++ +S+ G R KV D + R GVI + + + +GK+ + + ++ E
Sbjct: 710 ELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNE 760
>UNIPROTKB|P35885 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 EMBL:L27063 EMBL:AL939118 RefSeq:NP_628060.1
ProteinModelPortal:P35885 GeneID:1099309 KEGG:sco:SCO3873
PATRIC:23737530 Uniprot:P35885
Length = 857
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 293/721 (40%), Positives = 449/721 (62%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G ++ R+ PV L EM SY+ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++ G
Sbjct: 6 GDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPE 65
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAM 196
+ F KCARVVG+V+G +HPHGD+++YD+LVR+AQ +S+R PL+ +GNFGS DPAAAM
Sbjct: 66 RGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAM 125
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMA 256
RYTEC++ LS M+ DID++TV+F N+D +E NG++GIAVGMA
Sbjct: 126 RYTECKMAPLSMEMV-RDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMA 184
Query: 257 TNIPPHNLGELVDVLCALIHNPEATLQELL----EYMPGPDFPTGGLIMGNLGILDAYRT 312
TNIPPHNL E+ + N EA+ +ELL E + GPDFPTG L++G GI +AYRT
Sbjct: 185 TNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRT 244
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG IT+R EVE + + R +++ E+PYQTN L +KIA+LV++ + GI+D+RD
Sbjct: 245 GRGSITMRAVVEVEEIQN---RQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRD 301
Query: 373 E-SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
E S R+G R+VI LKR A +V+N+LY+ T LQS+F NM+ ++DG P+ + L ++
Sbjct: 302 ETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRH 361
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
+++ + V+ RR RF+L + +ER HI+ G++ LD +D VI ++R + + A L D
Sbjct: 362 WVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDL 421
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
++ E QA+AIL+M LRRL LER+K V E L +I + E+L+S ++ +E+
Sbjct: 422 LEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELT 481
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
L ++ R + L + G + D+I +++++ ++ GY+KR K + + Q RG G
Sbjct: 482 ALVEKYGDDRKTKLIPYE-GDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 540
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
KL+ +D ++ F V H +L+F+++G VY A+AY++P+ R+A G + +L+
Sbjct: 541 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 600
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQL---VPG--DE 726
E I I + ++ +LV+ T G +KK L + S R+ G+IAI L G DE
Sbjct: 601 PDETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDE 660
Query: 727 LKWVRCCTNDDLVAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
L + +D + + S+ I +S D +R + R T G M ++GD++ SM+++
Sbjct: 661 LIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVVR 720
Query: 785 A 785
A
Sbjct: 721 A 721
>UNIPROTKB|Q45066 [details] [associations]
symbol:parC "DNA topoisomerase 4 subunit A" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
TIGRFAMs:TIGR01063 EMBL:Z73234 EMBL:AF024713 PIR:B69637
RefSeq:NP_389692.2 ProteinModelPortal:Q45066 SMR:Q45066
PRIDE:Q45066 EnsemblBacteria:EBBACT00000001040 GeneID:937107
KEGG:bsu:BSU18100 PATRIC:18975451 GenoList:BSU18100
HOGENOM:HOG000076279 KO:K02621 ProtClustDB:PRK05561
BioCyc:BSUB:BSU18100-MONOMER ChEMBL:CHEMBL3487 HAMAP:MF_00937
TIGRFAMs:TIGR01061 Uniprot:Q45066
Length = 806
Score = 1208 (430.3 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 258/696 (37%), Positives = 415/696 (59%)
Query: 91 EEMTGS-YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV 149
EE+ G + YS ++ RALPD RDGLKPV RRIL+AMH G + K F+K A+ VG V
Sbjct: 13 EEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNV 72
Query: 150 LGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEA 209
+G +HPHGD++VY+++VRM+QD+ +R LI HGN GSID DP AAMRYTE RL ++
Sbjct: 73 IGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASE 132
Query: 210 MLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
LL DID++TV FVPNFD++ KE NG++GI+ G AT+IPPH+LGE++D
Sbjct: 133 -LLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVID 191
Query: 270 VLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLD 329
+ I P ++ EL+E + GPDFPTGG+I G GI AY TG+G+I +RGK E+E +
Sbjct: 192 AVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETI- 250
Query: 330 SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
+ R ++I EIP++ NK+ LV+K+ E +K ++GIS++RDE+DR+G+R+VIELK+ A
Sbjct: 251 -RGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEA 309
Query: 390 DPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLS 449
D ++N LY+ T LQ +++ NMV I + +P M L +L A++ + VV R+ ++L
Sbjct: 310 DAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQ 369
Query: 450 QVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRR 509
+ K+R HIVEG+M L LD VI +R + A L +++ +E QA+AI+ + L R
Sbjct: 370 KAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYR 429
Query: 510 LTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDAD 569
LT + +E++ L ++I +LE +LS+ K +L++I + LK +++ R S++E+
Sbjct: 430 LTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADTRRSVIEEKI 489
Query: 570 SGQLDDIDI-IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
++++ + ++++ + +++ GY+KR +F N G+ G ++ D M
Sbjct: 490 EEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASN----GQDFG-MKDTDRMLHQFE 544
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
D +L F+++G +++P+ G ++++ E I IP+ EF
Sbjct: 545 MNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPS 604
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIR-TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
+L+ T NG +KK L + + R + ++A+ L DEL V + + MA+ G
Sbjct: 605 AYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGY 664
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
+ D + + G + LK+ D + S +I+
Sbjct: 665 GLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEIL 700
Score = 70 (29.7 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 796 EDSHSNVKGSSGPWLLFVSES-GHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
ED +V ++G +F++ G+G + G+ G +D FVV
Sbjct: 641 EDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDD-----FVV 695
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ + +S +VL +Q G V R+ + + +R RGV+++R
Sbjct: 696 SGEILQQSDS---IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLR 737
Score = 65 (27.9 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED--RLAAVFVVGFSLAEDGESDEQ 867
+LF ++ G KR+ LS F K + G++ + ++ R+ A+F G +++
Sbjct: 707 VLF-TQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGL--------EQR 757
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
++ ++ G ++ +++ RY+ G E SGK+
Sbjct: 758 LMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKV 796
>UNIPROTKB|O67108 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 PIR:A70385
RefSeq:NP_213671.1 PDB:3NO0 PDBsum:3NO0 ProteinModelPortal:O67108
GeneID:1193742 KEGG:aae:aq_980 PATRIC:20959298 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 OMA:HRLEVIL ProtClustDB:CLSK2299574
BioCyc:AAEO224324:GJBH-704-MONOMER EvolutionaryTrace:O67108
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Uniprot:O67108
Length = 744
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 284/721 (39%), Positives = 430/721 (59%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+V + + EE+ +YI Y+MSV++GRA+PDVRDGLKPV RRIL++M+E+GL KPFKK A
Sbjct: 7 LVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGE LGK+HPHGD AVY++LVRMAQDF++RYPLI G GNFGSID DPAA MRYTE +L
Sbjct: 67 RIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEAKL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
L+ ML DID+DTV+F PNFD++ E NG SGIAVG+AT+IPPHN
Sbjct: 127 SPLAVEML-TDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L L NP+ ++ E++E + GPDFPTGG+I + + Y+TGRG I V+GK
Sbjct: 186 LTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGKA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
VE + +R ++I EIPYQ NK+ L++KIA+ V N + ISDIRDE+D+ G+RIV+
Sbjct: 246 HVEKVQGGRER--IVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A V+ LY+ T L+ F N+V ++D +PK + +K +L+ F+ R V+ RR
Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+++ L +V++R HIVEG++ ++ +D +I +R + S A L +EF LSEKQA A+L
Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAVL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
D+ L+RLT LER+K ++E K L E+I ++L++S +++ +E EL ++ R +
Sbjct: 424 DLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKYGDKRRT 483
Query: 564 ML---EDADSGQ-----LDDIDIIPNDEMLLAISEKGYVKRMKPNT---FNLQNRGTIGK 612
+ ++ G L D IIP +E+ L + + R+ P T F + NRG +
Sbjct: 484 FIGGVKEVKEGSITVAVLQDGSIIPVEELPLEKAPVVNILRV-PFTEGLFLVSNRGRVYW 542
Query: 613 SVGKLRVNDAMSDFIVCRAHDHV-LY----FSDRGIVYSARAY--KIPECTRNAAGTPLV 665
G + + + R V + F +R ++ + + Y KIP +
Sbjct: 543 IAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGM- 600
Query: 666 QILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP 723
I+ L++G+ + SI + + +++ T G + + S+ S+ G+ I+L
Sbjct: 601 PIIKLTEGDEVVSI---ASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK 657
Query: 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
DE +R + + + + G V S + I +R +G+ KD +D+I
Sbjct: 658 NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKD----TLVDLI 713
Query: 784 P 784
P
Sbjct: 714 P 714
>TIGR_CMR|APH_0899 [details] [associations]
symbol:APH_0899 "DNA gyrase, A subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_505474.1 ProteinModelPortal:Q2GJH7
STRING:Q2GJH7 GeneID:3931204 KEGG:aph:APH_0899 PATRIC:20950506
BioCyc:APHA212042:GHPM-912-MONOMER Uniprot:Q2GJH7
Length = 906
Score = 1136 (405.0 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 220/482 (45%), Positives = 332/482 (68%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+S ++PV + +E+ SY++Y+MSV++ RA+PDVRDGLKPVHRRIL++M++ G KP+
Sbjct: 1 MSDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPY 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK ARVVG+V+G++HPH D A+YD+LVRMAQDFSL PLI GNFGS+D DP A+MRYT
Sbjct: 61 KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNI 259
E RL A + LL DID+DTV+F PN+DE+++E NGA G+AVGM+TNI
Sbjct: 121 EARL-AQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNI 179
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
P HNLGE++D I NPE TL+EL+ +PGPDFPTGG+IMG+ GI A+ TGRG I +
Sbjct: 180 PSHNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIII 239
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
+GKT +E L S R +II EIPYQTNK+ LVE+I ELV+ K ++G+SD+RDES++SG+
Sbjct: 240 QGKTHIEELPSG--RQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGI 297
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+ IELK+ + +V+N L LT L++SFS N + + + +P+ M L E+++ F+ FR V
Sbjct: 298 RVAIELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEV 357
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR R++L +V+ER H+ G+ + + N+D ++ I+R + + A+AAL++ ++
Sbjct: 358 LVRRTRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEV 417
Query: 500 DAILDMNLRRLTMLERKKF---VDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556
++++ ++E ++ + K ++E ++L+ L K L++ Q ++ L
Sbjct: 418 RGMIELVSDSTGVIEGGRYRLTAPQIKAILE--MRLQRLTGLEKGKLEVELQSMVALITE 475
Query: 557 FS 558
++
Sbjct: 476 YT 477
Score = 406 (148.0 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 98/318 (30%), Positives = 177/318 (55%)
Query: 472 IRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILK 531
+R + E S+ST ++L+ Q AIL+M L+RLT LE+ K E ++++ I +
Sbjct: 417 VRGMIELVSDSTGVIE-GGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITE 475
Query: 532 LEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEK 591
++LS+ ++ ++ + ++++K R +TPR + +E++ G +D +IP +EM++ ++
Sbjct: 476 YTKILSTDSLLMCMVREGLLDVKRRVATPRRTTIEES-KGDIDAESLIPREEMVVTVTMN 534
Query: 592 GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651
G+VKR+K + + Q RG G+ ++ D + V H VL+FS+ G VY + YK
Sbjct: 535 GFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYK 594
Query: 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD-----QFLVMLTMNGYIKKVSLN 706
+P + G LV I L++GE ITS++P+ + D +V T +G I++ +L
Sbjct: 595 LPLGEPASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALA 654
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRG 765
F + + G IA+ L PGD+L C + D V ++S+ G I S +R R + G
Sbjct: 655 DFQYVPSNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDG 714
Query: 766 SVAMRLKDGDKMASMDII 783
A++L +GD++ SM ++
Sbjct: 715 VRAIKLAEGDQVISMSVL 732
Score = 118 (46.6 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 46/189 (24%), Positives = 86/189 (45%)
Query: 725 DELKWVRCCTNDDLVAMASQNGMVILSSC-DIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
D ++ ++ D +++M+ +G S + + ++R A DG+ +
Sbjct: 713 DGVRAIKLAEGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAE--SDGESIGKR--- 767
Query: 784 PAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843
+ + + L+ + E VK ++L V+E+G GKR +R VG++ +
Sbjct: 768 VSGMLEGLQLSEETFVDMVKKEQ--FILTVTENGFGKRTSAYEYRTTARGGVGVLNILTT 825
Query: 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
A + V FS+A +QV+L++ G + RI V DI I R +GV L + E
Sbjct: 826 ARN---GKVVASFSVAHT----DQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKG 878
Query: 904 GKIQSASLI 912
K+ S +L+
Sbjct: 879 EKVVSVALV 887
Score = 93 (37.8 bits), Expect = 6.5e-123, Sum P(2) = 6.5e-123
Identities = 33/132 (25%), Positives = 60/132 (45%)
Query: 561 RLS-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG--KSVGKL 617
R+S MLE + +D++ ++ +L ++E G+ KR + RG +G +
Sbjct: 767 RVSGMLEGLQLSEETFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTA 826
Query: 618 RVNDAMSDFIVCRAH-DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
R ++ F V AH D V+ +D+G + I R+ G V + GE++
Sbjct: 827 RNGKVVASFSV--AHTDQVMLITDKGKLIRISVSDIRIIGRSTQG---VTLFKTEKGEKV 881
Query: 677 TSIIPVSEFAGD 688
S+ V + +GD
Sbjct: 882 VSVALVID-SGD 892
Score = 89 (36.4 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 49/214 (22%), Positives = 100/214 (46%)
Query: 579 IPNDEMLLAISEKGYVKRMKPNTFNL-QNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLY 637
+ D +LL+ S G K ++ + N+ Q +G + V +++ A D ++ + VL+
Sbjct: 682 VSTDHVLLS-SRMG--KSIRFSVGNVRQFKGRMSDGVRAIKL--AEGDQVISMS---VLH 733
Query: 638 FSDRGIVYSARAYKIPECTR-NAA---GTPLVQILS-LSDGERITSIIPVSEFAGDQFLV 692
S+ KIP +R AA G + + +S + +G +++ V +QF++
Sbjct: 734 GSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQLSEETFVDMVKKEQFIL 793
Query: 693 MLTMNGYIKKVSLNLFSSIRTTGIIAIQ-LVPGDELKWVRCCT--NDDLVAMASQNGMVI 749
+T NG+ K+ S + + G+ + L K V + + D V + + G +I
Sbjct: 794 TVTENGFGKRTSAYEYRTTARGGVGVLNILTTARNGKVVASFSVAHTDQVMLITDKGKLI 853
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
S IR + R+T+G + + G+K+ S+ ++
Sbjct: 854 RISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALV 887
Score = 65 (27.9 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 27/113 (23%), Positives = 55/113 (48%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++F + SG+ +R L+ F+ +P N G I + D+L + V S + V+
Sbjct: 639 VVFATSSGNIRRNALADFQYVPSN--GKIAMVLTPGDQLISANVC--------VSTDHVL 688
Query: 870 LVSQSGTVNRIKVRDI-SIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
L S+ G R V ++ + R + GV ++L ++ S S++ +E +++
Sbjct: 689 LSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKLAEGDQVISMSVLHGSEASSEV 741
Score = 65 (27.9 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 31/124 (25%), Positives = 53/124 (42%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
V+ +G KRV LS++R G + ED +FVV ++ V+ S
Sbjct: 531 VTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVV--------DTHTSVLFFS 582
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
G V ++KV + + +RG L+ + L+ S++ + + D + S A
Sbjct: 583 NVGKVYKLKVYKLPLGEPASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFA 642
Query: 932 TESG 935
T SG
Sbjct: 643 TSSG 646
Score = 53 (23.7 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARG 894
+E VV V+ +G V R+K+ + Q R +G
Sbjct: 525 EEMVVTVTMNGFVKRVKLSNYRAQKRGGKG 554
Score = 46 (21.3 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
Identities = 28/123 (22%), Positives = 55/123 (44%)
Query: 763 TRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR- 821
+ G +AM L GD++ S ++ + H L S ++ S G F G R
Sbjct: 661 SNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKS---IRFSVGNVRQFKGRMSDGVRA 717
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
+ L+ ++ ++ L G + S+E R A + + S + ESD + + SG + ++
Sbjct: 718 IKLAEGDQV-ISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQ 776
Query: 882 VRD 884
+ +
Sbjct: 777 LSE 779
>UNIPROTKB|O50510 [details] [associations]
symbol:O50510 "DNA gyrase-like protein" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
GenomeReviews:AL645882_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
ProtClustDB:PRK05561 HSSP:P09097 EMBL:AL939125 PIR:T35872
RefSeq:NP_629959.1 ProteinModelPortal:O50510 GeneID:1101278
KEGG:sco:SCO5836 PATRIC:23741572 OMA:YSRALPD Uniprot:O50510
Length = 818
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 276/729 (37%), Positives = 423/729 (58%)
Query: 72 SVATVGPNVS--PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
S T P+ S RI+ +++ +EM GS++ Y+ SV+ RALPD RDGLKPVHRRI++ M+
Sbjct: 5 STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSI- 188
E+GL + + KCARVVGEV+GK HPHGD ++YD+LVRMAQ FS+R PL+ GHGNFGS+
Sbjct: 65 EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLG 124
Query: 189 DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGA 248
+ DP AAMRYTECR+ A + ++ ID+DTV+F PN+D ++E NGA
Sbjct: 125 NDDPPAAMRYTECRM-AEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGA 183
Query: 249 SGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILD 308
SGIAVGMATN+PPHNL E++ LI P A L L++++PGPD PTGG I+G GI D
Sbjct: 184 SGIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRD 243
Query: 309 AYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGIS 368
AY TGRG +R VE + ++ K G+++ E+P+ ++ KI +LV K + GI+
Sbjct: 244 AYETGRGTFKIRATVSVETVTARRK--GLVVTELPFAVGPEKVISKIKDLVGAKKIQGIA 301
Query: 369 DIRDESDRS-GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKE 427
D++D +DR+ G+R+VIE+K G P V+ LY+LTA++ SF N V ++DGQP +GLKE
Sbjct: 302 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKE 361
Query: 428 VLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA 487
+L+ +LD R +VV RR+ F+ S+ ++R H+VEG++ L ++D VIR++R + +++ A
Sbjct: 362 LLEVYLDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQR 421
Query: 488 LKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIE 547
L + F LS+ Q ILD LRRLT +R + E L +I +L +L S + +L+
Sbjct: 422 LMERFSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVS 481
Query: 548 QEVIELKNRFSTPRLSMLEDADSGQLDDIDI-IPNDEMLLAISEKGYVKRMKPNTFNLQN 606
E+ + +F T R + L ++ + + + + +D + +S G + R T N +
Sbjct: 482 AELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDPCRVLLSSTGLLAR----TANDEP 537
Query: 607 RGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-----TRN-A 659
T G RV +D + + A V + G + +P+ T N A
Sbjct: 538 LVT---EAGAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLA 594
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G PL + +SL D E + + + E + L + T G +K+V + S+ +I +
Sbjct: 595 GGAPLAEFVSLEDDEDVVCLTTLDESSPG--LALGTEQGVVKRVVPDYPSNKDELEVITL 652
Query: 720 QLVPGDELKW-VRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMA 778
+ GD + V T D+ + + + ++ +R R G ++L DG K+
Sbjct: 653 K--DGDRIVGGVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVI 710
Query: 779 SMDII-PAA 786
S + PAA
Sbjct: 711 SFTAVDPAA 719
>TIGR_CMR|BA_3656 [details] [associations]
symbol:BA_3656 "DNA topoisomerase IV, A subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 HOGENOM:HOG000076279 KO:K02621
ProtClustDB:PRK05561 TIGRFAMs:TIGR01061 HSSP:P09097
RefSeq:NP_845921.1 RefSeq:YP_020291.1 RefSeq:YP_029648.1
ProteinModelPortal:Q81Y99 SMR:Q81Y99 DNASU:1085874
EnsemblBacteria:EBBACT00000011931 EnsemblBacteria:EBBACT00000015898
EnsemblBacteria:EBBACT00000022636 GeneID:1085874 GeneID:2818280
GeneID:2851102 KEGG:ban:BA_3656 KEGG:bar:GBAA_3656 KEGG:bat:BAS3391
OMA:SYIAHRK BioCyc:BANT260799:GJAJ-3453-MONOMER
BioCyc:BANT261594:GJ7F-3562-MONOMER Uniprot:Q81Y99
Length = 807
Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
Identities = 272/762 (35%), Positives = 440/762 (57%)
Query: 91 EEMTGS-YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV 149
E++ G + YS ++ RALPD RDGLKPV RRIL++M+ G K F+K A+ VG V
Sbjct: 12 EDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTVGNV 71
Query: 150 LGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEA 209
+G +HPHGD++VY+++VR++Q + +R L+ HGN GS+D DPAAAMRYTE RL ++
Sbjct: 72 IGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPIASE 131
Query: 210 MLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
LL D+D++TV FV NFD++ +E NG++GI+ G AT IPPH+LGE++D
Sbjct: 132 -LLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEVID 190
Query: 270 VLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLD 329
I P +T+ +LL M GPDFPTGG+I G GI AY TG+G+I +RGK EVE +
Sbjct: 191 ATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVETV- 249
Query: 330 SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
+ + ++I EIPY+ NK+ LV+K+ EL +K LDGI+++RDE+DR+G+RIV+ELK+ A
Sbjct: 250 -RGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308
Query: 390 DPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLS 449
+ ++N LY+ T LQ ++ NMV I + +P M L ++L A++ + VV RR++++L
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368
Query: 450 QVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRR 509
+ + R+HIVEG+ L LD+VI +R + A L +F +E QA+AI+ + L R
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAEAIVSLQLYR 428
Query: 510 LTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDAD 569
LT + E+ L ++I++L+ +L S K +LQ+I+ ++ +K +S R +++ED
Sbjct: 429 LTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQI 488
Query: 570 SGQLDDIDI-IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
D+++ IP +++++ ++++GYVKR + N N GK G ++ D + +
Sbjct: 489 EEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASN----GKDFG-MKEGDILLERFD 543
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
+ VL F+++G Y++P+ G + I+SL E I V F +
Sbjct: 544 TNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEE 603
Query: 689 Q-FLVMLTMNGYIKKVSLNLFSSIR-TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ F+V +T NG IKK LN + R + +A+ L DE+ + + +A+
Sbjct: 604 KRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGA 663
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
++ D + + G A+ LK+ D +AS + A + + T + +K S
Sbjct: 664 YALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASE 723
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
+ +S KR L F++L N ++G + +D L
Sbjct: 724 ------IEKSTRAKR-GLVIFKELKRNPYRIVGIEIVRDDEL 758
>TIGR_CMR|ECH_0858 [details] [associations]
symbol:ECH_0858 "DNA gyrase, A subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_507653.1 ProteinModelPortal:Q2GFY0 STRING:Q2GFY0
GeneID:3927477 KEGG:ech:ECH_0858 PATRIC:20577126
BioCyc:ECHA205920:GJNR-861-MONOMER Uniprot:Q2GFY0
Length = 898
Score = 1097 (391.2 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 224/495 (45%), Positives = 332/495 (67%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV + +E+ SY++Y+MSV++ RA+PD+RDGLKPVHRRIL++M++ G KP+KK A
Sbjct: 7 VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPH D A+YDSLVRMAQDFSL PLI GNFGSID DP A+MRYTE RL
Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHN 263
A + LL DID+DTV+F PN+DE++ E NGA G+AVGM+TNIP HN
Sbjct: 127 -AKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A I NPE T EL+ + GPDFPTGG I+G+ GI A+ TG+G I ++GKT
Sbjct: 186 LGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGKT 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E D S + +II EIPYQ NK+ L+E+I EL++ K ++GI D+RDES++ G+R+ I
Sbjct: 246 HLE--DLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAI 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ +++N + LT L++SFS N + + + +PK M L +++ F+++R V+ RR
Sbjct: 304 ELKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASA--------ALKDEFKLS 495
+F+L +V+ER H+ G+ + + N+D+VI I+R + + A+ AL ++
Sbjct: 364 TQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMI 423
Query: 496 EKQADA---ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
E AD+ ++D N+ +LT ++ K + E K L+ E+L K+++ +I+Q
Sbjct: 424 ELVADSKSIVID-NVCQLTGVQVKSIL-EMKLQRLTNLEKEKLELDLKSMVSMIKQYTEL 481
Query: 553 LKNRFSTPRLSMLED 567
LKN+ S L +++D
Sbjct: 482 LKNKESL--LQLIKD 494
Score = 396 (144.5 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 101/335 (30%), Positives = 184/335 (54%)
Query: 472 IRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILK 531
+R + E ++S S + + +L+ Q +IL+M L+RLT LE++K + K+++ I +
Sbjct: 419 VREMIELVADSK-SIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQ 477
Query: 532 LEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEK 591
ELL +++++LQLI+ E+K + + PR + + D + D D+IP ++M++ ++
Sbjct: 478 YTELLKNKESLLQLIKDGFKEIKAKLAVPRRTTI-DYSHFETDIEDLIPKEDMVVTVTMS 536
Query: 592 GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651
GY+KR K + + Q RG G+ ++ D +++ V H VL+FS+ G VY + YK
Sbjct: 537 GYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYK 596
Query: 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD-QFL--VMLTMNGYIKKVSLNLF 708
+P + G LV I LS+ E ITS++P+ + D + L V T +G +++ +L+ F
Sbjct: 597 LPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDF 656
Query: 709 SSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSV 767
+ + G IA+ L GD L V+ C +D V ++++ G I S +R R + G
Sbjct: 657 QYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVR 716
Query: 768 AMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
A++L D + SM ++ L D++ +D + V
Sbjct: 717 AIKLSSDDNVISMSVL---LAMDIDSEKKDLYLKV 748
Score = 109 (43.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQ 867
++L V+E+G GKR +R VG++ +A + + A F V ES++
Sbjct: 789 FILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPV--------ESNDH 840
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
++L++ G + RI V DI I R +GV L + E K+ S + I + +D+
Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDI 894
Score = 91 (37.1 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 58/257 (22%), Positives = 110/257 (42%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
+ +V +TM+GYIK+ L+ + + + G I G +K TN L + + +
Sbjct: 527 EDMVVTVTMSGYIKRAKLSNYRAQKRGGKGRI----GQAIKEEDVITN--LFVVNTHTSV 580
Query: 748 VILSSCDIIRSLS--RNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
+ S+ + L + G R G + ++I P + ++ + NV+ +
Sbjct: 581 LFFSNIGRVYKLKVYKLPLGEPTSR---GRSL--VNIFPLSENESITSVMP-LPDNVEDA 634
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
++F + SG+ +R LS F+ +P N G I D L +V V + +
Sbjct: 635 EILNIVFATASGNLRRNALSDFQYVPSN--GKIAMVLDTGDTLISVKVC--------KEE 684
Query: 866 EQVVLVSQSGTVNRIKVRDI-SIQARYARGVILMRLELSGKIQSASLI---SVTEPETDL 921
+ V+L ++ G R V ++ + R + GV ++L + S S++ + + DL
Sbjct: 685 DHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSDDNVISMSVLLAMDIDSEKKDL 744
Query: 922 FLPSTSDK--LATESGV 936
+L DK E GV
Sbjct: 745 YLKVPLDKRMCVKEEGV 761
Score = 84 (34.6 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 26/118 (22%), Positives = 53/118 (44%)
Query: 569 DSGQLDDIDI--IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG--KSVGKLRVNDAMS 624
D G DI + + N++ +L ++E G+ KR + RG +G + R + ++
Sbjct: 772 DLGLEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVA 831
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
F V ++DH++ +D+G + I R+ G V + E++ S+ +
Sbjct: 832 SFPV-ESNDHIMLITDKGKLIRIAVSDIRIIGRSTQG---VTLFKTEKREKVVSVAKI 885
Score = 78 (32.5 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 24/116 (20%), Positives = 59/116 (50%)
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP----GDELKWVRCCTNDD 737
V+ +QF++ +T NG+ K+ S + + G+ + ++ G+ + +ND
Sbjct: 781 VTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDH 840
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM-DIIPAALHKDLE 792
++ + + ++ ++ DI R + R+T+G + + +K+ S+ II A + D++
Sbjct: 841 IMLITDKGKLIRIAVSDI-RIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDID 895
Score = 74 (31.1 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 35/143 (24%), Positives = 59/143 (41%)
Query: 759 LSRNTRGSVAMRLKDGDKMASMDI-IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESG 817
L +N + S+ +KDG K + +P D D + ++ V+ SG
Sbjct: 481 LLKN-KESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKED--MVVTVTMSG 537
Query: 818 HGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTV 877
+ KR LS++R G IG ED + +FVV + V+ S G V
Sbjct: 538 YIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVN--------THTSVLFFSNIGRV 589
Query: 878 NRIKVRDISIQARYARGVILMRL 900
++KV + + +RG L+ +
Sbjct: 590 YKLKVYKLPLGEPTSRGRSLVNI 612
Score = 43 (20.2 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 562 LSMLEDADSGQL-DDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
+++L A +G + + ND ++L I++KG + R+ + + R T G ++ K
Sbjct: 818 VNILTTARNGNVVASFPVESNDHIML-ITDKGKLIRIAVSDIRIIGRSTQGVTLFK 872
>UNIPROTKB|Q89K54 [details] [associations]
symbol:gyrA "Topoisomerase II" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097 OMA:KYKDGGL
RefSeq:NP_771697.1 ProteinModelPortal:Q89K54 GeneID:1051823
KEGG:bja:bll5057 PATRIC:21193782
BioCyc:BJAP224911:GJEJ-5094-MONOMER Uniprot:Q89K54
Length = 751
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 259/710 (36%), Positives = 388/710 (54%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
P I V L E + Y+ Y++S ++ RALPD RDGLKPVHRRIL+ M L L
Sbjct: 7 PPEPAEIHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGT 66
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
FKK A++VG+V+G FHPHGD A+YD++VR+AQDFS RYPL+ G GNFG+ID D AA R
Sbjct: 67 AFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYR 126
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMAT 257
YTE R+ ++ +LL ID+D V F PN+D KE NGA GIAVGMAT
Sbjct: 127 YTEARMTDVAR-LLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMAT 185
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNL-GILDAYRTGRGR 316
+IPPHN EL D LI P+A + LL+++ GPDFPTGG+ + + I +AY TGRG
Sbjct: 186 SIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGS 245
Query: 317 ITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
VR + E E + V++ EIP+ KS L+EKIAEL + K L + D+RDES
Sbjct: 246 FRVRARWEQE--EGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAE 303
Query: 377 SGMRIVIELK-RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ-PKQMGLKEVLQAFLD 434
+RIVIE K + DP++++ SL+RLT L++ N+ ++ G+ PK +GL E L+ +LD
Sbjct: 304 D-VRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLD 362
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
V+ RR+ ++ +Q++ R ++ G ++ N+D+VI+I+R + AL FKL
Sbjct: 363 HLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIR---TEDEPKPALMKAFKL 419
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
+E QA+AIL+M LR L LE + E K L ++ + +L+S + + ++V +++
Sbjct: 420 TEVQAEAILNMRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVR 479
Query: 555 NRFS--TP---RLSMLEDADSGQLDDID--IIPNDEMLLAISEKGYVKRMKPNTFNLQNR 607
+ F TP R + DA L I+ + + + + +S+KG+++ MK + +L
Sbjct: 480 DMFGPKTPLGKRRTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLS-- 537
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G K +D + +L F+ G YS K+P G P+
Sbjct: 538 GLAFKQ------DDRLGFAFFAETTSKLLLFATNGKFYSLDVAKLPG--GRGHGEPIRLF 589
Query: 668 LSLSDGERITSIIPVSEFAGDQFLVMLTMN-GYIKKVSLNLFSSIRTTGIIAIQLVPGDE 726
+ L E + V++ G +FLV G++ +N + TT Q++ D
Sbjct: 590 IDLEQ-EAAPVALFVNK-GGRKFLVASHEGQGFV----VNEDDCVGTTKK-GKQVLNVDM 642
Query: 727 LKWVRCCTN--DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG 774
R T D VA+ +N +++ D I ++R RG + KDG
Sbjct: 643 PNEARTVTEVVGDTVAVIGENRKMLVFPLDQIPEMARG-RGVRLQKYKDG 691
>TIGR_CMR|CBU_1866 [details] [associations]
symbol:CBU_1866 "DNA topoisomerase IV, A subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_820843.1 ProteinModelPortal:Q83AL7 PRIDE:Q83AL7
GeneID:1209779 KEGG:cbu:CBU_1866 PATRIC:17932465 OMA:RIDFEAL
BioCyc:CBUR227377:GJ7S-1842-MONOMER Uniprot:Q83AL7
Length = 753
Score = 959 (342.6 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 225/613 (36%), Positives = 357/613 (58%)
Query: 79 NVSPRIVPVE---LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
+ +P + VE L E + +Y+ YSMSV+L RALP + DGLKPV RRI++AM ELGL S
Sbjct: 6 STTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKS 65
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA-- 193
+KK AR VG+VLGKFHPHGD A Y+++V MAQ FS RYP + G GN+GS D DP
Sbjct: 66 TAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSF 124
Query: 194 AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAV 253
AAMRYTE RL A ++ +LL ++ + TV+++PNFD + KE NG SGIAV
Sbjct: 125 AAMRYTEARLSAYAQ-LLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAV 183
Query: 254 GMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRT 312
GMAT+IPPHNL E+ D L+ +PEATL+++++++ GPD+PT +I I YRT
Sbjct: 184 GMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRT 243
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
G+G + +R + E + ++I +P+Q + + ++E+IA + K L +SDIRD
Sbjct: 244 GQGSLRMRATYQKENGE-------IVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRD 296
Query: 373 ESDRSG-MRIVIELKRGA-DPSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEV 428
ESD R+VI + + ++ L+ T L+ S+ + NM+GI DG+PK L +
Sbjct: 297 ESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGI-DGRPKVKDLISL 355
Query: 429 LQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
L+ +L+FR V +R +++L V ER H++EG ++ NLD +I I+R+ L
Sbjct: 356 LKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRK---EDKPKPVL 412
Query: 489 KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQ 548
+FKLS++QA+AIL++ LR+L LE KK DE L ++ ++E+ L+S+ + +LI
Sbjct: 413 MKKFKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRG 472
Query: 549 EVIELKNRFSTPRLS-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNR 607
E+ K ++ R S ++E + + + +++P++ + + +S+KG+++ K + +
Sbjct: 473 ELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGE-- 530
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
T+ G + A R ++ ++ G Y+ A+ +P G PL
Sbjct: 531 -TLNYRSGDEFLMQAQG-----RTNELAVFLDSAGKSYALPAHILPSA--RGLGDPLTSR 582
Query: 668 LSLSDGERITSII 680
L + G ++
Sbjct: 583 LKPASGAHFVGVL 595
Score = 48 (22.0 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 24/104 (23%), Positives = 44/104 (42%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGI-IAIQLVP--GDELKWVRCCTNDDLVAMASQ 744
++ V L G + ++ S R G + +L P G V +DDL +AS
Sbjct: 549 NELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHFVGVLMGADDDLFLLASD 608
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
G L+S ++ +N G ++L G ++ ++P +H
Sbjct: 609 AGYGFLTS--LVNLHVKNRSGKAVIKLPKGAQV----MLPQRVH 646
>UNIPROTKB|Q9KPE0 [details] [associations]
symbol:VC_2430 "Topoisomerase IV, subunit A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 260/747 (34%), Positives = 414/747 (55%)
Query: 96 SYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHP 155
+Y+ YSM V++ RALP + DGLKPV RRI++AM ELGLS+ +KK AR VG+VLGK+HP
Sbjct: 22 AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
Query: 156 HGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA--AAMRYTECRLEALSEAMLLA 213
HGD+A Y+++V MAQ FS RYPL+ G GN+G+ D DP AAMRYTE +L +E +LL+
Sbjct: 82 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFAE-ILLS 139
Query: 214 DIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCA 273
++ Q TV++ PNFD + +E NG +GIAVGMAT+IPPHN+ E+ D
Sbjct: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
Query: 274 LIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
LI NP A L +L++Y+ GPDFPT +I + + YR+GRG I +R E D
Sbjct: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-AD 390
++I +P+Q + + L+E+IA + K L + D+RDESD RIVI + D
Sbjct: 257 ----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVD 312
Query: 391 PSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
+++N L+ T L+ SF + NM+G LD +P+ GL ++L ++ FR V R +++L
Sbjct: 313 CDLLMNHLFASTDLEKSFRVNLNMIG-LDNRPQVKGLVQILSEWISFRRETVRSRLQYRL 371
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+V R HI++G+++ NLD VI I+R + A L F L++ QADAILD LR
Sbjct: 372 DKVLARLHILQGLLIAYLNLDEVIEIIR---NEDDPKAVLMARFDLTDIQADAILDTKLR 428
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLED 567
L LE K E L ++ KLEELL S + + L+++E+ ++F R S ++E
Sbjct: 429 HLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVER 488
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
++ L + D++P++ + + +SEKG+++ K + + Q+ + G + A
Sbjct: 489 EEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQS---LNYKAGDNYLTHACG--- 542
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+++ ++ G YS ++ +P G P+ L++++G I ++ E
Sbjct: 543 --KSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEE--- 595
Query: 688 DQFLVMLTMNGY--IKKVSLNLFSSIRTTGIIAIQLVPGDEL---KWVRCCTNDDLVAMA 742
DQ ++ + GY + K +L S R+ G I L E+ + + ND+++A+
Sbjct: 596 DQLWLVGSDAGYGFVCKGD-DLLSKNRS-GKALINLPENSEVMTPQVIADLDNDEILAIT 653
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q M++ I+ L + ++G G+K+ + IPAA K E +
Sbjct: 654 NQGRMLLFP----IKDLPQLSKGK-------GNKIIN---IPAAKAKTREEVLSNLMVLP 699
Query: 803 KGSSGPWLLFVSESGHGKRVP-LSSFR 828
+G+S L+ + G +V L +FR
Sbjct: 700 QGAS--ITLYAGKRKLGLKVSDLDNFR 724
>TIGR_CMR|VC_2430 [details] [associations]
symbol:VC_2430 "topoisomerase IV, subunit A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 260/747 (34%), Positives = 414/747 (55%)
Query: 96 SYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHP 155
+Y+ YSM V++ RALP + DGLKPV RRI++AM ELGLS+ +KK AR VG+VLGK+HP
Sbjct: 22 AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
Query: 156 HGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA--AAMRYTECRLEALSEAMLLA 213
HGD+A Y+++V MAQ FS RYPL+ G GN+G+ D DP AAMRYTE +L +E +LL+
Sbjct: 82 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFAE-ILLS 139
Query: 214 DIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCA 273
++ Q TV++ PNFD + +E NG +GIAVGMAT+IPPHN+ E+ D
Sbjct: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
Query: 274 LIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
LI NP A L +L++Y+ GPDFPT +I + + YR+GRG I +R E D
Sbjct: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-AD 390
++I +P+Q + + L+E+IA + K L + D+RDESD RIVI + D
Sbjct: 257 ----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVD 312
Query: 391 PSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
+++N L+ T L+ SF + NM+G LD +P+ GL ++L ++ FR V R +++L
Sbjct: 313 CDLLMNHLFASTDLEKSFRVNLNMIG-LDNRPQVKGLVQILSEWISFRRETVRSRLQYRL 371
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+V R HI++G+++ NLD VI I+R + A L F L++ QADAILD LR
Sbjct: 372 DKVLARLHILQGLLIAYLNLDEVIEIIR---NEDDPKAVLMARFDLTDIQADAILDTKLR 428
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLED 567
L LE K E L ++ KLEELL S + + L+++E+ ++F R S ++E
Sbjct: 429 HLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVER 488
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
++ L + D++P++ + + +SEKG+++ K + + Q+ + G + A
Sbjct: 489 EEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQS---LNYKAGDNYLTHACG--- 542
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+++ ++ G YS ++ +P G P+ L++++G I ++ E
Sbjct: 543 --KSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEE--- 595
Query: 688 DQFLVMLTMNGY--IKKVSLNLFSSIRTTGIIAIQLVPGDEL---KWVRCCTNDDLVAMA 742
DQ ++ + GY + K +L S R+ G I L E+ + + ND+++A+
Sbjct: 596 DQLWLVGSDAGYGFVCKGD-DLLSKNRS-GKALINLPENSEVMTPQVIADLDNDEILAIT 653
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q M++ I+ L + ++G G+K+ + IPAA K E +
Sbjct: 654 NQGRMLLFP----IKDLPQLSKGK-------GNKIIN---IPAAKAKTREEVLSNLMVLP 699
Query: 803 KGSSGPWLLFVSESGHGKRVP-LSSFR 828
+G+S L+ + G +V L +FR
Sbjct: 700 QGAS--ITLYAGKRKLGLKVSDLDNFR 724
>UNIPROTKB|A6VD77 [details] [associations]
symbol:parC "DNA topoisomerase IV, A subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
KO:K02621 ProtClustDB:PRK05561 HOGENOM:HOG000076277 OMA:YKAGDSY
TIGRFAMs:TIGR01062 RefSeq:YP_001351012.1 ProteinModelPortal:A6VD77
SMR:A6VD77 STRING:A6VD77 GeneID:5358846 KEGG:pap:PSPA7_5693
PATRIC:19832871 BioCyc:PAER381754:GHMY-5699-MONOMER Uniprot:A6VD77
Length = 754
Score = 953 (340.5 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 220/577 (38%), Positives = 337/577 (58%)
Query: 96 SYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHP 155
+Y+ YSM V++ RALP + DGLKPV RRI++AM ELGL + KK AR VG+VLGKFHP
Sbjct: 24 AYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKSARTVGDVLGKFHP 83
Query: 156 HGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA--AAMRYTECRLEALSEAMLLA 213
HGD A Y+++V MAQ FS RYPL+ G GN+G+ D DP AAMRYTE RL SE +LL+
Sbjct: 84 HGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEARLSRYSE-VLLS 141
Query: 214 DIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCA 273
++ Q TV++VPNFD + E NG +GIAVGMAT++PPHNL E+
Sbjct: 142 ELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNLREVASACVR 201
Query: 274 LIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
L+ P AT+ EL E++PGPDFPT +I + Y TGRG + +R VE D
Sbjct: 202 LLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMRAVYRVEDGD--- 258
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-AD 390
++I +P+Q + S ++E+IA ++ K L ++D+RDESD RIVI + D
Sbjct: 259 ----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPRSNRVD 314
Query: 391 PSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
++ L+ T L++++ + N++G LDG+P+ L+++L +L +R V RR +F+L
Sbjct: 315 VEELMTHLFATTDLETTYRVNLNIIG-LDGKPQVKDLRQLLSEWLQYRIGTVRRRLQFRL 373
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+V+ R H+++G+++ NLD VI I+R + A L + F+LSE QAD ILD LR
Sbjct: 374 DKVERRLHLLDGLLIAFLNLDEVIHIIR---TEDQPKAVLMERFELSEVQADYILDTRLR 430
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLED 567
+L LE K E + L+++ +L+ LL S + +L+ +E+I+ + R S ++
Sbjct: 431 QLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVAR 490
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
A++ L + +++P + + + +SEKG+V+ K + + G S + D
Sbjct: 491 AEARALSETELMPTEPVTVVLSEKGWVRCAKGHDID-----AAGLSY---KAGDGFKAAA 542
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPL 664
R++ + ++ G YS A+ +P G PL
Sbjct: 543 PGRSNQYAVFIDSTGRSYSLPAHSLPSA--RGQGEPL 577
Score = 40 (19.1 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 20/77 (25%), Positives = 29/77 (37%)
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ---SASL 911
GF A G S++ V + +G + + ARG LSG++ AS
Sbjct: 537 GFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPS----ARG---QGEPLSGRLTPPPGASF 589
Query: 912 ISVTEPETDLFLPSTSD 928
V P+ D SD
Sbjct: 590 ECVLLPDDDALYVIASD 606
>TIGR_CMR|SO_3897 [details] [associations]
symbol:SO_3897 "DNA topoisomerase IV, A subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_719428.1 ProteinModelPortal:Q8EAK5 SMR:Q8EAK5
GeneID:1171537 KEGG:son:SO_3897 PATRIC:23527476 Uniprot:Q8EAK5
Length = 758
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 222/593 (37%), Positives = 347/593 (58%)
Query: 96 SYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHP 155
+Y+ YSM V++ RALP + DGLKPV RRI++AM ELGLS++ KK AR VG+VLGK+HP
Sbjct: 24 AYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKSARTVGDVLGKYHP 83
Query: 156 HGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA--AAMRYTECRLEALSEAMLLA 213
HGD+A Y+++V MAQ FS RYPL+ G GN+G+ D DP AAMRYTE RL SE +LL+
Sbjct: 84 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEARLSKFSE-VLLS 141
Query: 214 DIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCA 273
++ Q TV + NFD + KE NG +GIAVGMAT+IPPHN+ ELV+ A
Sbjct: 142 ELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPPHNVRELVNACVA 201
Query: 274 LIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
L+ P+ L++L+ Y+PGPD+PT +I I Y TGRG + R VE +
Sbjct: 202 LLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYETGRGSLKARAVYSVEAGE--- 258
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-AD 390
++I +P+Q + ++E IA ++ K L ++D+RDESD +R+VI + D
Sbjct: 259 ----IVITALPHQASSGKILELIAAQMQAKKLPMVADLRDESDHENPVRLVIVPRSNRVD 314
Query: 391 PSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
++ L+ T L+ SF + N++G LDG+P+ GLK++L +L+FR V RR ++L
Sbjct: 315 CDQLMAHLFATTDLEKSFRVNLNVLG-LDGRPRVKGLKDLLTEWLEFRVDTVRRRLEYRL 373
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+V R HI+E +M+ N+D VI I+R + A L F L++KQA+AIL++ LR
Sbjct: 374 DKVLARLHILEALMIAFLNIDEVIEIIR---FHDEPKAELMARFNLTDKQAEAILELKLR 430
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLED 567
L LE K E L + KLE+LL S + + LI++E+I+ + R S ++E
Sbjct: 431 HLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELIQDGETYGDDRRSPIVER 490
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
+S L + ++ P++ + + +S+KG+V+ K + + ++ + G + AM
Sbjct: 491 HESKALTEQELTPSEPVTVVLSDKGWVRSAKGHDIDAES---LSYKAGDQYLCSAMG--- 544
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
R++ ++ G ++ ++ +P + G P+ +++ GE + +I
Sbjct: 545 --RSNQAAVFIDSSGRAFATDSHSLPSA--RSQGEPITTRFNMAPGETMQHVI 593
>TIGR_CMR|SPO_0726 [details] [associations]
symbol:SPO_0726 "DNA topoisomerase IV, A subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K02621
ProtClustDB:PRK05561 HOGENOM:HOG000076277 RefSeq:YP_165980.1
ProteinModelPortal:Q5LVH5 GeneID:3193734 KEGG:sil:SPO0726
PATRIC:23374725 OMA:KYKDGGL Uniprot:Q5LVH5
Length = 782
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 247/692 (35%), Positives = 374/692 (54%)
Query: 97 YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPH 156
Y+TY++S ++ RALPD RDGLKPVHRRIL+AM EL LSS F+K A++ G+V+G +HPH
Sbjct: 31 YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISGDVMGNYHPH 90
Query: 157 GDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADID 216
GD A+YD++ R+AQDF++RYPL+ G GNFG+ID D AA RYTE R+ ++EA LL ++
Sbjct: 91 GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEA-LLDGLN 149
Query: 217 QDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIH 276
+D V+F N+D + E NG+SGIAVGMATNIPPHN+ EL D LI
Sbjct: 150 EDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCDACLHLIK 209
Query: 277 NPEATLQELLEYMPGPDFPTGGLIMGNL-GILDAYRTGRGRITVRGKTEVELLDSKSKRM 335
P+A LL Y+PGPDFPTGG+I+ I AYRTGRG +R K EVE D +
Sbjct: 210 TPDARDDTLLNYVPGPDFPTGGIIVEPPESIAQAYRTGRGSFRLRCKYEVE--DLGRGQW 267
Query: 336 GVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK-RGADPSIV 394
+++ EIPYQ KS L+EK+AE+++ K + ++D+RDES +R+++E + + DP ++
Sbjct: 268 QIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDES-ADDIRLILEPRTKNVDPEVL 326
Query: 395 VNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKE 453
+ LYR + L+ FS NM ++DG PK +KEVL+AFLD R V+ RR+R +L ++
Sbjct: 327 MGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRHRLGKIDH 386
Query: 454 RRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTML 513
R ++EG ++ NLDRVI I+R +A +++E+ + +A D
Sbjct: 387 RLEVLEGFIIAFLNLDRVIDIIRY--DEDPKAALMREEWGIDHPRALNEADYVSPAPGEG 444
Query: 514 ERKKFVDES--KTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
E + E+ + + +LEE+ R+ + E+ E+++ + P L +D
Sbjct: 445 ELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAERA--EIEDLLADPALQWARISD-- 500
Query: 572 QLDDIDI-----IPNDEMLLAISEKGYVKRM--------KPNTFNLQNRGTIGKSVG--- 615
QL + P +E G V+ + +P T G + G
Sbjct: 501 QLKETKKTFGKDFPGGARRTRFAEAGEVEEVPLEAMIEREPITVVCSQMGWVRAMTGHID 560
Query: 616 ---KLRVNDAMSDFIVCRAH--DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+L+ D + A D +L F+ G Y+ A +P G PL ++ L
Sbjct: 561 LTRELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAANLPG--GRGMGEPLRLMVDL 618
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTM-NGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
+ I I+ + + + LV T NG++ + + + RT G + V DE
Sbjct: 619 PNEAEIVDIL-IHQ-PERKLLVASTAGNGFVVPET-EVVAQTRT-GKQVLN-VRDDERAL 673
Query: 730 VRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
+ D VA+ SQNG ++ D + + R
Sbjct: 674 ICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGR 705
>UNIPROTKB|P0AFI2 [details] [associations]
symbol:parC species:83333 "Escherichia coli K-12"
[GO:0007059 "chromosome segregation" evidence=IDA;IMP] [GO:0003916
"DNA topoisomerase activity" evidence=IEA;IDA] [GO:0019897
"extrinsic to plasma membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA;IDA] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0030541 "plasmid partitioning"
evidence=IDA] [GO:0007062 "sister chromatid cohesion" evidence=IMP]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0019897 EMBL:U28377
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 EMBL:M63491 eggNOG:COG0188
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 DrugBank:DB00817
GO:GO:0030541 KO:K02621 ProtClustDB:PRK05561 EMBL:M58408
EMBL:L22025 PIR:A65089 RefSeq:NP_417491.1 RefSeq:YP_491211.1
PDB:1ZVT PDB:1ZVU PDBsum:1ZVT PDBsum:1ZVU ProteinModelPortal:P0AFI2
SMR:P0AFI2 DIP:DIP-36030N IntAct:P0AFI2 MINT:MINT-1227290
PaxDb:P0AFI2 PRIDE:P0AFI2 EnsemblBacteria:EBESCT00000000502
EnsemblBacteria:EBESCT00000015620 GeneID:12933371 GeneID:947499
KEGG:ecj:Y75_p2945 KEGG:eco:b3019 PATRIC:32121452 EchoBASE:EB0680
EcoGene:EG10686 HOGENOM:HOG000076277 OMA:YKAGDSY
BioCyc:EcoCyc:EG10686-MONOMER BioCyc:ECOL316407:JW2987-MONOMER
BindingDB:P0AFI2 ChEMBL:CHEMBL1895 EvolutionaryTrace:P0AFI2
Genevestigator:P0AFI2 HAMAP:MF_00936 TIGRFAMs:TIGR01062
Uniprot:P0AFI2
Length = 752
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 223/604 (36%), Positives = 344/604 (56%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
LHE +Y+ YSM V++ RALP + DGLKPV RRI++AM ELGL++ FKK AR VG+
Sbjct: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA--AAMRYTECRLEAL 206
VLGK+HPHGD+A Y+++V MAQ FS RYPL+ G GN+G+ D DP AAMRYTE RL
Sbjct: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGE 266
SE +LL+++ Q T ++VPNFD + +E NG +GIAVGMAT+IPPHNL E
Sbjct: 129 SE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRITVRGKTEV 325
+ ALI P+ TL +LL+ + GPD+PT +I I Y GRG + +R +
Sbjct: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIE 384
E D V+I +P+Q + + ++E+IA + NK L + D+RDESD R+VI
Sbjct: 248 E--DG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300
Query: 385 LKRG-ADPSIVVNSLYRLTALQSSF--SCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
+ D V+N L+ T L+ S+ + NM+G LDG+P L E+L +L FR V
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIG-LDGRPAVKNLLEILSEWLVFRRDTVR 359
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++L +V +R HI+EG++V N+D VI I+R + AL F L+E QA+A
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEA 416
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL++ LR L LE K E L ++ +L+ +L+S + + L+++E+ + R
Sbjct: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476
Query: 562 LSMLEDADSGQ-LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
S L++ + + + + D++P++ + + +S+ G+V+ K + ++ G +
Sbjct: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH--DIDAPGL------NYKAG 528
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D+ + +++ V++ G Y+ +P G PL L+L G + ++
Sbjct: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML 586
Query: 681 PVSE 684
S+
Sbjct: 587 MESD 590
>UNIPROTKB|A8ISW5 [details] [associations]
symbol:CHLREDRAFT_115934 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 EMBL:DS496122
RefSeq:XP_001692279.1 ProteinModelPortal:A8ISW5 STRING:A8ISW5
EnsemblPlants:EDP04229 GeneID:5717863 KEGG:cre:CHLREDRAFT_115934
BioCyc:CHLAMY:CHLREDRAFT_115934-MONOMER Uniprot:A8ISW5
Length = 315
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 167/305 (54%), Positives = 212/305 (69%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++ RALPDVRDGLKPVHRRIL+AMHELGL + KP+KKCARVVGEVLGKFHPHGDNAV
Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
YDSLVR+AQDFS+R PL++GHGNFGS+DADPAAAMRYTECRL +E +LL D+ TV
Sbjct: 61 YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120
Query: 222 FVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
+ FD SQ+E NG+ GIAVG+A+ IPPHNLGE+V L LI NPE T
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-ELLDSKSKRMGVIIK 340
+EL+E + GPD+PTGG ++ +L AYRTGRG + E D + ++I
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPELLAAYRTGRGSAAAEKLAQAAETADGGPEL--IVIT 238
Query: 341 EIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYR 400
E+PY K + G++D+RDESDR+GMR+V+E+K G + +++ L++
Sbjct: 239 ELPYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFK 298
Query: 401 LTALQ 405
T LQ
Sbjct: 299 DTRLQ 303
>GENEDB_PFALCIPARUM|PFL1120c [details] [associations]
symbol:PFL1120c "DNA GyrAse a-subunit, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 505 (182.8 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 121/349 (34%), Positives = 197/349 (56%)
Query: 62 SKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVH 121
+ D+ N N ++ + VE+ E ++ S+++Y+ ++L R L D RDGLK V
Sbjct: 150 TNDKLDNINNNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQ 209
Query: 122 RRILFAMHELGLS-SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIR 180
RRI+++M+E+ +K +KKCAR+VGEV+GK+HPHGD +VYD+LVR+AQ LI+
Sbjct: 210 RRIIWSMYEINKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIK 269
Query: 181 GHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXX 240
G+GNFGS++ + AAAMRYTE ++ + +LL +I+ + V ++ NFD +++E
Sbjct: 270 GYGNFGSVEYN-AAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKI 328
Query: 241 XXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLI 300
NG SGIAV + ++IP HNL ++ + + N EL + GPDF TGG+I
Sbjct: 329 PLLLINGCSGIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGII 388
Query: 301 MGNLGIL-DAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSM--LVEKIA- 356
+ IL + Y +G+G +R E + + K + I ++ N + L +KI
Sbjct: 389 ISKYDILKNIYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIII 448
Query: 357 ----------ELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVV 395
EL+EN ++ ++D ++E D +RI E ++ D IV+
Sbjct: 449 KNLPPNVKPNELIEN-IINLLNDKKNEHDNILLRIRDESEK-EDMRIVL 495
Score = 244 (91.0 bits), Expect = 9.5e-25, Sum P(3) = 9.5e-25
Identities = 66/243 (27%), Positives = 129/243 (53%)
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTL--DGIS-DIRDESDRSGMRIVIE 384
+D +K+ +IIK +P + L+E I L+ +K D I IRDES++ MRIV+E
Sbjct: 439 IDKLTKK--IIIKNLPPNVKPNELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLE 496
Query: 385 LKRGADPSIVVNSL---YRLTALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVV 440
LK+ + + N L ++ T +Q S+ CN V I + Q LK ++ + + R +
Sbjct: 497 LKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFI 556
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+ K ++++ +I++ ++ + + +I ++ + LK+ FKL+ +Q
Sbjct: 557 KTNYEIKNKNLQKQLNIIDLYLIIQNKILDIITFFQKNQNIEQIQLYLKNNFKLNPEQIK 616
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
IL + L++L ++ F+ + +M QI +E++++ +NI LI QE+I +KN++
Sbjct: 617 YILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIH 676
Query: 561 RLS 563
L+
Sbjct: 677 NLN 679
Score = 116 (45.9 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 43/202 (21%), Positives = 94/202 (46%)
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
I+ R D +L + + Y + + ++ GTP+ QI+ S + IT I E
Sbjct: 920 ILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSS--KNITGITKFQE-- 975
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
++L++ + NG +K ++ ++F + GI +L + + C +D + ++NG
Sbjct: 976 NKKYLIVCSENGKMKVINNDVFLKRKKKGI---KLFKNKKNIYFSYCNFNDNCIVGTKNG 1032
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+I + +N+ G+ + L DK+ +D++ + E++ N+K
Sbjct: 1033 YIIQFPLSSFKISKKNSLGNKCISLAKNDKV--VDLL----------SYENNEKNLKNYK 1080
Query: 807 GPWLLFVSESGHGKRVPLSSFR 828
++FV+++G GK + L+ +
Sbjct: 1081 ---IIFVTKNGFGKMINLNELK 1099
Score = 75 (31.5 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 25/122 (20%), Positives = 60/122 (49%)
Query: 814 SESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
+++G+ + PLSSF+ N +G + D++ V ++ + E + +++ V++
Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKV--VDLLSYENNEKNLKNYKIIFVTK 1086
Query: 874 SGTVNRIKVRDISIQARYARGVILMRLELS-----GK--IQSASLISVTEPETDLFLPST 926
+G I + ++ IQ + +G +M+ + S K I+ + ++ + D +PS
Sbjct: 1087 NGFGKMINLNELKIQKKKGKGHRIMKFKKSKTRKDNKKDIEKKQINAINNKDKDKDIPSN 1146
Query: 927 SD 928
+D
Sbjct: 1147 ND 1148
Score = 64 (27.6 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQN 606
DI NDE+L+ I+ GY+K++K N L+N
Sbjct: 798 DIYNNDEVLILITYGGYIKKIKINE-KLKN 826
Score = 61 (26.5 bits), Expect = 3.2e-49, Sum P(3) = 3.2e-49
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 685 FAGDQFLVMLTMNGYIKKVSLN 706
+ D+ L+++T GYIKK+ +N
Sbjct: 800 YNNDEVLILITYGGYIKKIKIN 821
Score = 52 (23.4 bits), Expect = 2.6e-44, Sum P(3) = 2.6e-44
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
ND ++ ++ GY+ + ++F + + ++G L ND + D +
Sbjct: 1022 NDNCIVG-TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLL 1067
Score = 44 (20.5 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 864 SDEQVVLVSQSGTVNRIKVRD 884
+DE ++L++ G + +IK+ +
Sbjct: 802 NDEVLILITYGGYIKKIKINE 822
Score = 37 (18.1 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 6/47 (12%), Positives = 24/47 (51%)
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
D++ M + + ++I + +++ ++ + ++ +++ DII
Sbjct: 1176 DILIMITDHAVLIRKNMSLLKEKNKKHSSQIYAKMNKINQLVYFDII 1222
>UNIPROTKB|Q8I0X3 [details] [associations]
symbol:GyrA "DNA gyrase subunit A;evidence=inferred from
direct assay" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 505 (182.8 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 121/349 (34%), Positives = 197/349 (56%)
Query: 62 SKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVH 121
+ D+ N N ++ + VE+ E ++ S+++Y+ ++L R L D RDGLK V
Sbjct: 150 TNDKLDNINNNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQ 209
Query: 122 RRILFAMHELGLS-SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIR 180
RRI+++M+E+ +K +KKCAR+VGEV+GK+HPHGD +VYD+LVR+AQ LI+
Sbjct: 210 RRIIWSMYEINKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIK 269
Query: 181 GHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXX 240
G+GNFGS++ + AAAMRYTE ++ + +LL +I+ + V ++ NFD +++E
Sbjct: 270 GYGNFGSVEYN-AAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKI 328
Query: 241 XXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLI 300
NG SGIAV + ++IP HNL ++ + + N EL + GPDF TGG+I
Sbjct: 329 PLLLINGCSGIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGII 388
Query: 301 MGNLGIL-DAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSM--LVEKIA- 356
+ IL + Y +G+G +R E + + K + I ++ N + L +KI
Sbjct: 389 ISKYDILKNIYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIII 448
Query: 357 ----------ELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVV 395
EL+EN ++ ++D ++E D +RI E ++ D IV+
Sbjct: 449 KNLPPNVKPNELIEN-IINLLNDKKNEHDNILLRIRDESEK-EDMRIVL 495
Score = 244 (91.0 bits), Expect = 9.5e-25, Sum P(3) = 9.5e-25
Identities = 66/243 (27%), Positives = 129/243 (53%)
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTL--DGIS-DIRDESDRSGMRIVIE 384
+D +K+ +IIK +P + L+E I L+ +K D I IRDES++ MRIV+E
Sbjct: 439 IDKLTKK--IIIKNLPPNVKPNELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLE 496
Query: 385 LKRGADPSIVVNSL---YRLTALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVV 440
LK+ + + N L ++ T +Q S+ CN V I + Q LK ++ + + R +
Sbjct: 497 LKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFI 556
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+ K ++++ +I++ ++ + + +I ++ + LK+ FKL+ +Q
Sbjct: 557 KTNYEIKNKNLQKQLNIIDLYLIIQNKILDIITFFQKNQNIEQIQLYLKNNFKLNPEQIK 616
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
IL + L++L ++ F+ + +M QI +E++++ +NI LI QE+I +KN++
Sbjct: 617 YILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIH 676
Query: 561 RLS 563
L+
Sbjct: 677 NLN 679
Score = 116 (45.9 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 43/202 (21%), Positives = 94/202 (46%)
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
I+ R D +L + + Y + + ++ GTP+ QI+ S + IT I E
Sbjct: 920 ILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSS--KNITGITKFQE-- 975
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
++L++ + NG +K ++ ++F + GI +L + + C +D + ++NG
Sbjct: 976 NKKYLIVCSENGKMKVINNDVFLKRKKKGI---KLFKNKKNIYFSYCNFNDNCIVGTKNG 1032
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+I + +N+ G+ + L DK+ +D++ + E++ N+K
Sbjct: 1033 YIIQFPLSSFKISKKNSLGNKCISLAKNDKV--VDLL----------SYENNEKNLKNYK 1080
Query: 807 GPWLLFVSESGHGKRVPLSSFR 828
++FV+++G GK + L+ +
Sbjct: 1081 ---IIFVTKNGFGKMINLNELK 1099
Score = 75 (31.5 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 25/122 (20%), Positives = 60/122 (49%)
Query: 814 SESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
+++G+ + PLSSF+ N +G + D++ V ++ + E + +++ V++
Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKV--VDLLSYENNEKNLKNYKIIFVTK 1086
Query: 874 SGTVNRIKVRDISIQARYARGVILMRLELS-----GK--IQSASLISVTEPETDLFLPST 926
+G I + ++ IQ + +G +M+ + S K I+ + ++ + D +PS
Sbjct: 1087 NGFGKMINLNELKIQKKKGKGHRIMKFKKSKTRKDNKKDIEKKQINAINNKDKDKDIPSN 1146
Query: 927 SD 928
+D
Sbjct: 1147 ND 1148
Score = 64 (27.6 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQN 606
DI NDE+L+ I+ GY+K++K N L+N
Sbjct: 798 DIYNNDEVLILITYGGYIKKIKINE-KLKN 826
Score = 61 (26.5 bits), Expect = 3.2e-49, Sum P(3) = 3.2e-49
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 685 FAGDQFLVMLTMNGYIKKVSLN 706
+ D+ L+++T GYIKK+ +N
Sbjct: 800 YNNDEVLILITYGGYIKKIKIN 821
Score = 52 (23.4 bits), Expect = 2.6e-44, Sum P(3) = 2.6e-44
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
ND ++ ++ GY+ + ++F + + ++G L ND + D +
Sbjct: 1022 NDNCIVG-TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLL 1067
Score = 44 (20.5 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 864 SDEQVVLVSQSGTVNRIKVRD 884
+DE ++L++ G + +IK+ +
Sbjct: 802 NDEVLILITYGGYIKKIKINE 822
Score = 37 (18.1 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 6/47 (12%), Positives = 24/47 (51%)
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
D++ M + + ++I + +++ ++ + ++ +++ DII
Sbjct: 1176 DILIMITDHAVLIRKNMSLLKEKNKKHSSQIYAKMNKINQLVYFDII 1222
>UNIPROTKB|Q8EYM0 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 EMBL:AE010300 GenomeReviews:AE010300_GR HSSP:P09097
RefSeq:NP_714373.1 ProteinModelPortal:Q8EYM0 GeneID:1153535
KEGG:lil:LA_4193 PATRIC:22389225 HOGENOM:HOG000040410 OMA:TINVITH
ProtClustDB:CLSK575165 BioCyc:LINT189518:GJBB-3319-MONOMER
Uniprot:Q8EYM0
Length = 462
Score = 266 (98.7 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 64/172 (37%), Positives = 91/172 (52%)
Query: 100 YSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDN 159
YS V RA+P DGLKPV RRIL+AM +R + K +V G +G +HPHGD
Sbjct: 29 YSRYVCDSRAIPHEIDGLKPVQRRILWAMWNS--DARNRYTKTVKVAGLAMG-YHPHGDK 85
Query: 160 AVYDSLVRMAQDFSL--RYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADID 216
++ D+L +MAQDF+ PL+ G G FG + D A+ RYTE +L + + +
Sbjct: 86 SIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSDFVKDLGFFESL 145
Query: 217 QDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELV 268
D +++V N+DE++ E N GIA G IP H L ++V
Sbjct: 146 PD-IDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADIV 196
Score = 116 (45.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 47/225 (20%), Positives = 109/225 (48%)
Query: 339 IKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIV-VNS 397
+ + P N+ ++ + +++E K + D D S ++ R+ ++ K+G PS + +
Sbjct: 249 LTDSPMNWNREKVISLLDDILERKD-SWLKDYVDYSSQT-FRVELQYKKGEKPSQKEIMA 306
Query: 398 LYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHI 457
L+ +Q+ + N++ DG+ K +E+++ F DFR + + RR + +LS ++E +
Sbjct: 307 LFNKEDVQT-LAMNVI-TYDGKLKNFKPEEIIKRFCDFRKTHLIRRFK-RLSGLEEEK-- 361
Query: 458 VEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF----KLSE-KQADAILDMNLRRLTM 512
++ +IR ++E + K +F K S+ K + + + + R+T+
Sbjct: 362 -------IERNSELIRFIKEKWNEKVIGIKSKKDFEEKLKTSKFKYFEWLSTIPVYRMTI 414
Query: 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
E KK + + + + L+ K + + + E+ EL+N++
Sbjct: 415 EEVKKCEEAIVEAKTTLARYQGLVKEDKKLTEFMIIELEELQNKW 459
>UNIPROTKB|Q3KL34 [details] [associations]
symbol:gyrA_2 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:CP000051 GenomeReviews:CP000051_GR GO:GO:0006265
eggNOG:COG0188 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 RefSeq:YP_328486.1 ProteinModelPortal:Q3KL34
STRING:Q3KL34 GeneID:3687724 KEGG:cta:CTA_0717 PATRIC:32023358
HOGENOM:HOG000028598 OMA:ERAIPHI ProtClustDB:PRK09630
BioCyc:CTRA315277:GI4C-738-MONOMER Uniprot:Q3KL34
Length = 490
Score = 275 (101.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 77/237 (32%), Positives = 122/237 (51%)
Query: 97 YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPH 156
+ Y+ V+L RA+P V DGLKPV RR+L+ + + K K A + G + HPH
Sbjct: 12 FTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM--DDGK-MHKVANIAGRTMA-LHPH 67
Query: 157 GDNAVYDSLVRMAQDFSLRYPLIRGHGNFGS-IDADPAAAMRYTECRLEALSEAMLLADI 215
GD + ++LV +A + LI GNFG+ + DP AA RY E RL L++ +L
Sbjct: 68 GDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVLF--- 120
Query: 216 DQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALI 275
+ D + F ++D ++E +G GIAVGM T I PHN +L++ A++
Sbjct: 121 NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQIAIL 180
Query: 276 HNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
++ +L PDFP GG + + D Y+ G G I +R +++++ K+
Sbjct: 181 NDQPFSLL--------PDFPPGGTMDAS----D-YQDGLGSIVLRAT--IDIINDKT 222
Score = 108 (43.1 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 75/300 (25%), Positives = 131/300 (43%)
Query: 292 PDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSML 351
PDFP GG + + D Y+ G G I +R +++++ K+ ++IKEI T L
Sbjct: 189 PDFPPGGTMDAS----D-YQDGLGSIVLRAT--IDIINDKT----LLIKEICPSTTTETL 237
Query: 352 VEKIAELVENKTLDGISDIRDESDRSG--MRIVIELKRGADPSIVVNSLYRLTALQSSFS 409
+ I EN GI I D S I I+L +G ++ LY T Q +
Sbjct: 238 IRSI----ENAAKRGIIKIDSIQDFSTDLPHIEIKLPKGIYAKDLLRPLYTHTECQVILT 293
Query: 410 CNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF-KLSQVKERRH-IVEGIMVGLDN 467
I G+P + + E+L+ + +++ + S +E H +E + +
Sbjct: 294 SRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILEDSLSRELYHKTLEYLFIKHKL 353
Query: 468 LDRVIRIV---REAPSNSTA-SAALK------DEFKLSEKQADAILDMNLRRLTMLERKK 517
D V ++ + +PS+S +A L+ D +KQA A L LT+ +
Sbjct: 354 YDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAPDKQATA----QLAALTIKKILC 409
Query: 518 FVDESKTLMEQILKLEELLSS-RKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI 576
F DE+ + +++ LE+ SS +K++ QL + V+ +K T R + DD+
Sbjct: 410 F-DEN-SYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETYRQLGHRKTKIAKFDDL 467
>UNIPROTKB|Q8A1S9 [details] [associations]
symbol:BT_3579 "Topoisomerase IV subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 KO:K02621 HSSP:P09097 HOGENOM:HOG000028598
RefSeq:NP_812491.1 ProteinModelPortal:Q8A1S9 GeneID:1072261
KEGG:bth:BT_3579 PATRIC:21062161 OMA:DTQGNWG ProtClustDB:PRK12758
BioCyc:BTHE226186:GJXV-3646-MONOMER Uniprot:Q8A1S9
Length = 850
Score = 271 (100.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 93/290 (32%), Positives = 136/290 (46%)
Query: 97 YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPH 156
++ Y+ V+L RA+P + DGLKPV RRIL +M L R + K A +VG + +FHPH
Sbjct: 6 FLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD-DGR--YNKVANIVGHTM-QFHPH 61
Query: 157 GDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADI 215
GD ++ D+LV++ Q L LI GN+G+I D AAA RY E RL S+ L
Sbjct: 62 GDASIGDALVQLGQK-DL---LIDCQGNWGNILTGDGAAAPRYIEARL---SKFALDIVF 114
Query: 216 DQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALI 275
+ T + ++D KE G GIAVG+++ I PHN EL D + +
Sbjct: 115 NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYL 174
Query: 276 HN------PEATLQELLEYMPGPDFPTGGLIM--GNLGILDAYRTGRGRITVRGKTEVEL 327
H P+ ++ D GG + + LD I GKT +
Sbjct: 175 HGESFQLYPDFQTGGSIDVAKYNDGERGGAVKVRAKINKLDNKTLAITEIPY-GKTTSTV 233
Query: 328 LDS--KSKRMGVI-IKEIPYQT--NKSMLVEKIAELVENKTLDGISDIRD 372
+DS K+ G I I+++ T N +LV +KT+D + D
Sbjct: 234 IDSILKAVDKGKIKIRKVDDNTAANVEILVHLAPGTSSDKTIDALYAFTD 283
Score = 143 (55.4 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 76/350 (21%), Positives = 154/350 (44%)
Query: 274 LIHNPEATLQELLEYMPG------PDFPTGGLIMGNLGILDAYRTGR--GRITVRGKTEV 325
L HN + Y+ G PDF TGG I + Y G G + VR K +
Sbjct: 159 LPHNFNELCDASISYLHGESFQLYPDFQTGGSID-----VAKYNDGERGGAVKVRAK--I 211
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
LD+K+ + I EIPY S +++ I + V+ + I + D++ + + I++ L
Sbjct: 212 NKLDNKT----LAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKV-DDNTAANVEILVHL 265
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
G +++LY T + S S N I D +P + + +VL+ D ++++
Sbjct: 266 APGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTLGLLKQELE 325
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
K ++ E H + ++ +R+ + S +A + +L+ I ++
Sbjct: 326 IKKGEILESLHFASLEKIFIE--ERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFIREV 383
Query: 506 NLRR-LTMLERK-----KF-VDESKTLMEQILKLEELLSSRKNILQLIEQEVI---ELKN 555
L ++E K KF D++ L+ + +K EE+ ++ +++ V LK+
Sbjct: 384 TKEDILKLMEIKMGRILKFNTDKADELIAR-MK-EEIAEIDDHLAHIVDYTVNWYQMLKS 441
Query: 556 RFST--PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYV-KRMKPNTF 602
++ PR + L + D+ ++ ++ +E L ++G++ +K + F
Sbjct: 442 KYGKNFPRRTELRNFDT--IEAAKVVEANEKLYINRDEGFIGTALKKDEF 489
Score = 60 (26.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKV-RD---ISIQARYARGVILMRL 900
FS +GE++ V + + V RI RD ISI+ R A+GVIL RL
Sbjct: 580 FSANPNGEAEIIKVTLKPNPRVRRIIFERDFSEISIKGRQAQGVILTRL 628
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 199 (75.1 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 62/219 (28%), Positives = 106/219 (48%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G ++ P I + + + + I +SMS + R++P V DG KP R++L+ + L S
Sbjct: 720 GTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE 778
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSIDADPA- 193
+ A V E G +H HG+ ++ +++ +AQ+F S +++ +G+FGS A
Sbjct: 779 IKVAQLAGYVSENTG-YH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKD 836
Query: 194 -AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIA 252
+A RY L ++ + +D +V + DE E NGA GI
Sbjct: 837 FSAARYIFTELSEITRK-IFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 894
Query: 253 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPG 291
G +TNIP +N +LV + L++ E LQE+ + G
Sbjct: 895 TGWSTNIPSYNPKDLVTNIRRLMNGEE--LQEMTPWYKG 931
Score = 67 (28.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN-KTLDGISDIR 371
G + V G+ +E +DS + V I EIP +T + + E + N KT I D+
Sbjct: 940 GPQKFKVSGR--IEQIDSNT----VEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM- 992
Query: 372 DESDRSGMRIVIELKRGA-DPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQ 430
+E + +R VI+L S+ + L R + S NMV D + +VL+
Sbjct: 993 EEHHTTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAF-DPMGRIKKYNDVLE 1051
Query: 431 AFLDF 435
DF
Sbjct: 1052 IIKDF 1056
Score = 41 (19.5 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 14/69 (20%), Positives = 37/69 (53%)
Query: 500 DAILDMNLRRLTMLERKK-FVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ I D RL +++K ++ ++ L Q+L +LS + +++I ++ + + N+
Sbjct: 1051 EIIKDFYYVRLEYYQKRKDYMTDN--LQNQLL----MLSEQARFIKMIIEKQLSVANKKK 1104
Query: 559 TPRLSMLED 567
+++LE+
Sbjct: 1105 KQLVALLEE 1113
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 199 (75.1 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 62/219 (28%), Positives = 106/219 (48%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G ++ P I + + + + I +SMS + R++P V DG KP R++L+ + L S
Sbjct: 720 GTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE 778
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSIDADPA- 193
+ A V E G +H HG+ ++ +++ +AQ+F S +++ +G+FGS A
Sbjct: 779 IKVAQLAGYVSENTG-YH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKD 836
Query: 194 -AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIA 252
+A RY L ++ + +D +V + DE E NGA GI
Sbjct: 837 FSAARYIFTELSEITRK-IFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 894
Query: 253 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPG 291
G +TNIP +N +LV + L++ E LQE+ + G
Sbjct: 895 TGWSTNIPSYNPKDLVTNIRRLMNGEE--LQEMTPWYKG 931
Score = 67 (28.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 35/125 (28%), Positives = 55/125 (44%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN-KTLDGISDIR 371
G + V G+ +E +DS + V I EIP +T + + E + N KT I D+
Sbjct: 940 GPQKFKVSGR--IEQIDSNT----VEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM- 992
Query: 372 DESDRSGMRIVIELKRGA-DPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQ 430
+E + +R VI+L S+ + L R + S NMV D + +VL+
Sbjct: 993 EEHHTTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAF-DPMGRIKKYNDVLE 1051
Query: 431 AFLDF 435
DF
Sbjct: 1052 IIKDF 1056
Score = 41 (19.5 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 14/69 (20%), Positives = 37/69 (53%)
Query: 500 DAILDMNLRRLTMLERKK-FVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ I D RL +++K ++ ++ L Q+L +LS + +++I ++ + + N+
Sbjct: 1051 EIIKDFYYVRLEYYQKRKDYMTDN--LQNQLL----MLSEQARFIKMIIEKQLSVANKKK 1104
Query: 559 TPRLSMLED 567
+++LE+
Sbjct: 1105 KQLVALLEE 1113
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 194 (73.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 110/470 (23%), Positives = 202/470 (42%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ E + G + + M V L R++P + DGLKP R+IL+ + L K +++
Sbjct: 700 ISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLA 756
Query: 147 GEVLGK--FHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSID--ADPAAAMRYTE 200
G V + +H HG+ ++ +++RM Q F S PL++ G FG+ + AA+ RY
Sbjct: 757 GAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIF 815
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNI 259
L A + +L D D + N +E E NG GI G +T I
Sbjct: 816 TAL-APTTRLLFPQADDDLLQ--KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKI 872
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
N +++D++ I + EY P + G L ++ +
Sbjct: 873 ANRNPIDIIDMIRRKIDSIST------EYEIPPFYEE---FRGKLEVVTPTK-----FIS 918
Query: 320 RGKTEVELLDSKS-KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
GK ++ + K+ + I E+P S EK++++VE + S+ R R
Sbjct: 919 SGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSE-RHTEKRVH 977
Query: 379 MRIVIELKRGADPSIVVNS-LYRLTALQSSFSCNMVGILD--GQPKQMG-LKEVLQAFLD 434
RI ++ K+ + NS L L++S + N V + D G+ K+ G + E+ F +
Sbjct: 978 FRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRV-LFDRNGELKEFGNISEIAAEFFE 1036
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
R + E+R + + + + + VE + ++ + +R N + F++
Sbjct: 1037 VRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRV 1096
Query: 495 --------SEKQADA--ILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ K+A+ +L+M + RLT E K+ ++E K+ L+ E
Sbjct: 1097 DPMATIAKNSKKANYGYLLEMPVSRLTSDEMKR-LEERKSRRRTELEAAE 1145
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 194 (73.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 110/470 (23%), Positives = 202/470 (42%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ E + G + + M V L R++P + DGLKP R+IL+ + L K +++
Sbjct: 700 ISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLA 756
Query: 147 GEVLGK--FHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSID--ADPAAAMRYTE 200
G V + +H HG+ ++ +++RM Q F S PL++ G FG+ + AA+ RY
Sbjct: 757 GAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIF 815
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNI 259
L A + +L D D + N +E E NG GI G +T I
Sbjct: 816 TAL-APTTRLLFPQADDDLLQ--KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKI 872
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
N +++D++ I + EY P + G L ++ +
Sbjct: 873 ANRNPIDIIDMIRRKIDSIST------EYEIPPFYEE---FRGKLEVVTPTK-----FIS 918
Query: 320 RGKTEVELLDSKS-KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
GK ++ + K+ + I E+P S EK++++VE + S+ R R
Sbjct: 919 SGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSE-RHTEKRVH 977
Query: 379 MRIVIELKRGADPSIVVNS-LYRLTALQSSFSCNMVGILD--GQPKQMG-LKEVLQAFLD 434
RI ++ K+ + NS L L++S + N V + D G+ K+ G + E+ F +
Sbjct: 978 FRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRV-LFDRNGELKEFGNISEIAAEFFE 1036
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
R + E+R + + + + + VE + ++ + +R N + F++
Sbjct: 1037 VRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRV 1096
Query: 495 --------SEKQADA--ILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ K+A+ +L+M + RLT E K+ ++E K+ L+ E
Sbjct: 1097 DPMATIAKNSKKANYGYLLEMPVSRLTSDEMKR-LEERKSRRRTELEAAE 1145
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 191 (72.3 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 60/199 (30%), Positives = 105/199 (52%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
I YS + L R++P + DGLKP R+ILFA + L++ + + V E +H HG
Sbjct: 799 IHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLSGYVAEQTS-YH-HG 855
Query: 158 DNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSI---DADPAAAMRYTECRLEALSEAMLL 212
+ ++ ++V+MA +F S PL+ G FG+ +D A+A RY +LE ++ L
Sbjct: 856 EQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASA-RYIFTKLEPVAR-YLF 913
Query: 213 ADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLC 272
++D +N++ ES + NG+ GI VGM+T+IP + +++D L
Sbjct: 914 NELDDPLLNYLEEEGESIQPDYYIPIIPMLLV-NGSEGIGVGMSTSIPLFSPIDIIDQLM 972
Query: 273 ALIHNPEATLQELLEYMPG 291
++N + L++L+ + G
Sbjct: 973 LRLNN-QVALKKLIPWYRG 990
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 155 (59.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 49/169 (28%), Positives = 86/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DG KP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 722 RSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L +L+ +L +D + +
Sbjct: 778 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLAR-LLFPAVDDNLLK 836
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 837 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 883
Score = 88 (36.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 71/331 (21%), Positives = 142/331 (42%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 912 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 965
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 966 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1025
Query: 427 EVLQAFLDFRCSVVERRARFKLSQV--------KERRHIVEGIM--VGLDNLDR--VIRI 474
++L+ F D R S R + + + + R I+E I + ++N + +I++
Sbjct: 1026 DILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 1085
Query: 475 VREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ + S A K+ EK A+ N + + S IL +
Sbjct: 1086 LVQRGYESDPVRAWKEA---QEKAAEEEDTQNQHDDSSSDSGT---PSGPDFNYILNMSL 1139
Query: 535 LLSSRKNILQLIEQ------EVIELKNRFSTPRLSMLED--ADSGQLDDIDIIPNDEMLL 586
+++ + +LI+Q EV +LK + +P ED A +LD ++ +++L
Sbjct: 1140 WSLTKEKVEELIKQRDTKGREVNDLKRK--SPSDLWKEDLAAFVEELDKVEAQEREDILA 1197
Query: 587 AISEKGYVKRM-KPNTFNLQNRGTIGKSVGK 616
+S K ++ KP LQ T+ G+
Sbjct: 1198 GMSGKAIKGKVGKPKVKKLQLEETMPSPYGR 1228
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 154 (59.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DG KP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 713 RSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 768
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 769 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLAR-LLFPAVDDNLLK 827
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 828 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 874
Score = 88 (36.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 70/331 (21%), Positives = 142/331 (42%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 903 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 956
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 957 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1016
Query: 427 EVLQAFLDFRCSVVERRARFKLSQV--------KERRHIVEGIM--VGLDNLDR--VIRI 474
++L+ F D R S R + + + + R I+E I + ++N + +I++
Sbjct: 1017 DILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 1076
Query: 475 VREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ + S A K+ EK A+ N + + S IL +
Sbjct: 1077 LVQRGYESDPVKAWKEA---QEKAAEEEESQNQHDDSSSDSGT---PSGPDFNYILNMSL 1130
Query: 535 LLSSRKNILQLIEQ------EVIELKNRFSTPRLSMLED--ADSGQLDDIDIIPNDEMLL 586
+++ + +LI+Q EV +LK + +P ED A +LD ++ +++L
Sbjct: 1131 WSLTKEKVEELIKQRDAKGREVSDLKRK--SPSDLWKEDLAAFVEELDKVEAQEREDVLA 1188
Query: 587 AISEKGYVKRM-KPNTFNLQNRGTIGKSVGK 616
++ K ++ KP LQ T+ G+
Sbjct: 1189 GMAGKAIKGKVGKPKVKKLQLEETMPSPYGR 1219
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 154 (59.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DG KP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 734 RSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 790 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLAR-LLFPAVDDNLLK 848
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 849 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 895
Score = 88 (36.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 71/331 (21%), Positives = 142/331 (42%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 924 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 977
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 978 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1037
Query: 427 EVLQAFLDFRCSVVERRARFKLSQV--------KERRHIVEGIM--VGLDNLDR--VIRI 474
++L+ F D R S R + + + + R I+E I + ++N + +I++
Sbjct: 1038 DILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 1097
Query: 475 VREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ + S A K+ EK A+ N + + S IL +
Sbjct: 1098 LVQRGYESDPVKAWKEA---QEKAAEEDETQNQHDDSSSDSGT---PSGPDFNYILNMSL 1151
Query: 535 LLSSRKNILQLIEQ------EVIELKNRFSTPRLSMLED--ADSGQLDDIDIIPNDEMLL 586
+++ + +LI+Q EV +LK + +P ED A +LD ++ +++L
Sbjct: 1152 WSLTKEKVEELIKQRDAKGREVNDLKRK--SPSDLWKEDLAAFVEELDKVESQEREDVLA 1209
Query: 587 AISEKGYVKRM-KPNTFNLQNRGTIGKSVGK 616
+S K ++ KP LQ T+ G+
Sbjct: 1210 GMSGKAIKGKVGKPKVKKLQLEETMPSPYGR 1240
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 154 (59.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DG KP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 729 RSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 785 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLAR-LLFPAVDDNLLK 843
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 844 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 890
Score = 84 (34.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/132 (24%), Positives = 64/132 (48%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 919 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 972
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 973 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1032
Query: 427 EVLQAFLDFRCS 438
++L+ F D R S
Sbjct: 1033 DILKEFFDLRLS 1044
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 183 (69.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 70/272 (25%), Positives = 126/272 (46%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G + P + +++ + + I +S++ L R++P + DGLKP R+++F + +
Sbjct: 667 GTVLDPHLTEIQIGDFINKELILFSLADNL-RSIPHLLDGLKPSQRKVIFGSFKRNIMKT 725
Query: 137 --KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGS--IDA 190
K + A V G+ +H H + ++ ++V +AQDF + L+ G FG+
Sbjct: 726 EIKVQELAAYVSGQTA--YH-HTEQSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRATGG 782
Query: 191 DPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASG 250
AAA RY +L ++S+ + +D + +V + DE E NGA G
Sbjct: 783 KDAAAARYIFTQLNSISKHVF-NPLDNPLLTYVQD-DEKTVEPEWYVPALPMVLVNGAEG 840
Query: 251 IAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAY 310
I G +T+IPP N ++V+ L L+ E ++ + G + G + +DA
Sbjct: 841 IGTGWSTSIPPFNPIDIVNNLRKLMRGDEP--DDMAPWFRGWN--------GTMQKIDAQ 890
Query: 311 RTGR-GRITVRGKTEVELLDSKSKRMGVIIKE 341
R GRI G+ VE+ + ++ IKE
Sbjct: 891 RYRIFGRIEQVGENTVEITELPARTWTTTIKE 922
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 181 (68.8 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 90/367 (24%), Positives = 158/367 (43%)
Query: 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSL 165
L R++P + DGLKP R+IL+A + L + + V E +H HG+ ++ ++
Sbjct: 697 LDRSIPSMLDGLKPGQRKILYACFKRNLKKDIKVAQLSAYVAEH-SAYH-HGEGSLASTI 754
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQDF S L+ G FG+ AA+ RY RL AL+ + + DQ +
Sbjct: 755 VNLAQDFVGSNNVNLLHPSGQFGTRLQGGKDAASARYIYTRLAALTRHLFNENDDQ-LLT 813
Query: 222 FVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
++ N + E NGA GI G +T IP +N +++ L L+ E
Sbjct: 814 YL-NEEGQSIEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDIMANLRRLL---EGE 869
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR------GRITVRGKTEVELLDSKSKRM 335
QE + P + G GN+ +++G G +T G +E+ + ++
Sbjct: 870 AQEAMH----PWY-RG--FNGNIAEAATHKSGSRSYVVSGTVTQTGPNTIEITELPIRKW 922
Query: 336 GVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVV 395
KE +++L + E V I+D + S + V+EL G ++
Sbjct: 923 TQDYKEFL----ETLL--RPTEKVRRDEAPIIADYSEHHSDSNVHFVVELLPGKMEELLA 976
Query: 396 N--SLYRLTALQSSFSCNMVGILD--GQPKQMGLKEVLQA-FLDFRCSVVERR--ARFKL 448
+ L L + + + + + D G K E++ A F + R E+R A K+
Sbjct: 977 SPGGLDGKFKLTTKIATSNMMLFDHSGMIKHYSSPEMIVAEFYELRLDYYEKRRIAMLKV 1036
Query: 449 SQVKERR 455
+ + ++R
Sbjct: 1037 ASLDQKR 1043
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 159 (61.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 739 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 794
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 795 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLAR-LLFPSVDDNLLK 853
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 854 FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVN 900
Score = 86 (35.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 33/139 (23%), Positives = 64/139 (46%)
Query: 306 ILDAYRTGRGRITVRGKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVEN-- 361
+L Y+ RG I G+ + + R V I E+P +T + E++ E + N
Sbjct: 914 MLPNYKNFRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGT 973
Query: 362 -KTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ- 419
KT ISD ++ + ++ V+++ L+++ LQ+S +CN + + D
Sbjct: 974 EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMG 1033
Query: 420 --PKQMGLKEVLQAFLDFR 436
K ++++L+ F D R
Sbjct: 1034 CLKKYETVQDILKEFFDLR 1052
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLD 574
E++ + N FS P S D D+ +LD
Sbjct: 1444 EKKNQDFGNIFSFPSYSQKTDDDTTKLD 1471
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 159 (61.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 739 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 794
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 795 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLAR-LLFPSVDDNLLK 853
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 854 FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVN 900
Score = 86 (35.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 33/139 (23%), Positives = 64/139 (46%)
Query: 306 ILDAYRTGRGRITVRGKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVEN-- 361
+L Y+ RG I G+ + + R V I E+P +T + E++ E + N
Sbjct: 914 MLPNYKNFRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGT 973
Query: 362 -KTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ- 419
KT ISD ++ + ++ V+++ L+++ LQ+S +CN + + D
Sbjct: 974 EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMG 1033
Query: 420 --PKQMGLKEVLQAFLDFR 436
K ++++L+ F D R
Sbjct: 1034 CLKKYETVQDILKEFFDLR 1052
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLD 574
E++ + N FS P S D D+ +LD
Sbjct: 1444 EKKNQDFGNIFSFPSYSQKTDDDTTKLD 1471
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 159 (61.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 741 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 796
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L L+ +L +D + +
Sbjct: 797 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLAR-LLFPSVDDNLLK 855
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 856 FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVN 902
Score = 86 (35.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 33/139 (23%), Positives = 64/139 (46%)
Query: 306 ILDAYRTGRGRITVRGKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVEN-- 361
+L Y+ RG I G+ + + R V I E+P +T + E++ E + N
Sbjct: 916 MLPNYKNFRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGT 975
Query: 362 -KTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ- 419
KT ISD ++ + ++ V+++ L+++ LQ+S +CN + + D
Sbjct: 976 EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMG 1035
Query: 420 --PKQMGLKEVLQAFLDFR 436
K ++++L+ F D R
Sbjct: 1036 CLKKYETVQDILKEFFDLR 1054
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLD 574
E++ + N FS P S D D+ +LD
Sbjct: 1446 EKKNQDFGNIFSFPSYSQKTDDDTTKLD 1473
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 147 (56.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 50/171 (29%), Positives = 86/171 (50%)
Query: 108 RALPDVRD--GLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYD 163
R++P + D G KP R++LF + + K K A++ G V + +H HG+ A+
Sbjct: 711 RSIPSLVDEIGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMM 766
Query: 164 SLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDT 219
++V +AQ+F S L++ G FG+ AA+ RY L +LS +L +D +
Sbjct: 767 TIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSR-LLFPAVDDNL 825
Query: 220 VNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
+ F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 826 LKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 874
Score = 86 (35.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 70/331 (21%), Positives = 142/331 (42%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 903 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 956
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 957 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1016
Query: 427 EVLQAFLDFRCSVVERRARFKLSQV--------KERRHIVEGIM--VGLDNLDR--VIRI 474
++L+ F D R S R + + + + R I+E I + ++N + +I++
Sbjct: 1017 DILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 1076
Query: 475 VREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ + S A K+ EK A+ N + + S IL +
Sbjct: 1077 LVQRGYESDPVKAWKEA---QEKAAEEEETQNQHDDSSSDSGT---PSGPDFNYILNMSL 1130
Query: 535 LLSSRKNILQLIEQ------EVIELKNRFSTPRLSMLED--ADSGQLDDIDIIPNDEMLL 586
+++ + +LI+Q EV +LK + +P ED A +LD ++ +++L
Sbjct: 1131 WSLTKEKVEELIKQRDAKGREVNDLKRK--SPSDLWKEDLAAFVEELDKVEAQEREDILA 1188
Query: 587 AISEKGYVKRM-KPNTFNLQNRGTIGKSVGK 616
++ K ++ KP LQ T+ G+
Sbjct: 1189 GMAGKAIKGKVGKPKVKKLQLEETMPSPYGR 1219
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 144 (55.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 49/171 (28%), Positives = 86/171 (50%)
Query: 108 RALPDVRD--GLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYD 163
R++P + D G KP R++LF + + K K A++ G V + +H HG+ A+
Sbjct: 726 RSIPSLVDETGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMM 781
Query: 164 SLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDT 219
++V +AQ+F S L++ G FG+ AA+ RY L +L+ +L +D +
Sbjct: 782 TIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLAR-LLFPAVDDNL 840
Query: 220 VNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
+ F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 841 LKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN 889
Score = 86 (35.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 70/331 (21%), Positives = 142/331 (42%)
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVEN---KTLDGISD 369
G+ + V G E+ ++D R V I E+P +T + E++ E + N KT ISD
Sbjct: 918 GQNQYAVSG--EIFVVD----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISD 971
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLK 426
++ + ++ V+++ L+++ LQ++ +CN + + D K ++
Sbjct: 972 YKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQ 1031
Query: 427 EVLQAFLDFRCSVVERRARFKLSQV--------KERRHIVEGIM--VGLDNLDR--VIRI 474
++L+ F D R S R + + + + R I+E I + ++N + +I++
Sbjct: 1032 DILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 1091
Query: 475 VREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEE 534
+ + S A K+ EK A+ N + + S IL +
Sbjct: 1092 LVQRGYESDPVKAWKEA---QEKAAEEEETQNQHDDSSSDSGT---PSGPDFNYILNMSL 1145
Query: 535 LLSSRKNILQLIEQ------EVIELKNRFSTPRLSMLED--ADSGQLDDIDIIPNDEMLL 586
+++ + +LI+Q EV +LK + +P ED A +LD ++ +++L
Sbjct: 1146 WSLTKEKVEELIKQRDAKGREVNDLKRK--SPSDLWKEDLAAFVEELDKVEAQEREDVLA 1203
Query: 587 AISEKGYVKRM-KPNTFNLQNRGTIGKSVGK 616
++ K ++ KP LQ T+ G+
Sbjct: 1204 GMAGKAIKGKIGKPKVKKLQLEETMPSPFGR 1234
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 168 (64.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 63/212 (29%), Positives = 103/212 (48%)
Query: 63 KDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHR 122
K E R S G ++ R V + + I +SM+ L R++P + DGLKP R
Sbjct: 658 KIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQR 716
Query: 123 RILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSLVRMAQDF--SLRYPL 178
+ILF + +RK K A++VG V L +H HG+ ++ +++ MAQD+ S L
Sbjct: 717 KILFVAFKK--IARKEMK-VAQLVGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINL 772
Query: 179 IRGHGNFGSIDAD--PAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXX 236
+ +G FG+ + +A+ RY +L ++ + D D ++++ N D + E
Sbjct: 773 LLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKD-DDLLLDYL-NEDGQRIEPTWY 830
Query: 237 XXXXXXXXXNGASGIAVGMATNIPPHNLGELV 268
NGA GI G +T IP +N E+V
Sbjct: 831 MPIIPTVLVNGAEGIGTGWSTFIPNYNPREIV 862
Score = 57 (25.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 519 VDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDI 578
VDE+ T+ L + KN LQ LK P ++ + + D D+
Sbjct: 909 VDET-TIRITELPIRRWNDDYKNFLQ-------SLKTDNGAPFFQDVKAYNDEKSVDFDL 960
Query: 579 IPNDEMLLAISEKGYVKRMKPNT 601
I ++E +LA ++G++K+ K T
Sbjct: 961 ILSEENMLAARQEGFLKKFKLTT 983
Score = 44 (20.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 516 KKFVDESKTLMEQI-LKLEELLSSRKNILQLIEQEVIELKNR 556
KK+V + L E L+ E ++ +++ +E E+++L+N+
Sbjct: 1000 KKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLKLENK 1041
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 170 (64.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 69/266 (25%), Positives = 122/266 (45%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVR 167
R++P + DG KP R++LFA + + A V E+ +H HG+ ++ ++V
Sbjct: 748 RSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAEI-SAYH-HGEQSLMGTIVN 805
Query: 168 MAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFV 223
+AQD+ S L+ G FG+ +A+ RY +L ++ + A D + + F+
Sbjct: 806 LAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAH-DDNVLRFL 864
Query: 224 PNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHN-PEAT 281
++E+Q+ E NGA GI G +TNIP +N ELV + LI P+
Sbjct: 865 --YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKA 922
Query: 282 LQELLEYMPGPDF---PTGGLIMGNLGILDAYRTGRGRITVRGKTE------VE-LLDSK 331
L + G P+ G + +LD + ++ T+ +E L++S
Sbjct: 923 LAPWYKNFRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESS 982
Query: 332 SKRMGVIIKEIPYQTNKSM-LVEKIA 356
K+ VI+ Y T+ ++ V K++
Sbjct: 983 DKKSPVIVDYKEYHTDTTVKFVVKLS 1008
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 170 (64.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 69/266 (25%), Positives = 122/266 (45%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVR 167
R++P + DG KP R++LFA + + A V E+ +H HG+ ++ ++V
Sbjct: 748 RSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAEI-SAYH-HGEQSLMGTIVN 805
Query: 168 MAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFV 223
+AQD+ S L+ G FG+ +A+ RY +L ++ + A D + + F+
Sbjct: 806 LAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAH-DDNVLRFL 864
Query: 224 PNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHN-PEAT 281
++E+Q+ E NGA GI G +TNIP +N ELV + LI P+
Sbjct: 865 --YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKA 922
Query: 282 LQELLEYMPGPDF---PTGGLIMGNLGILDAYRTGRGRITVRGKTE------VE-LLDSK 331
L + G P+ G + +LD + ++ T+ +E L++S
Sbjct: 923 LAPWYKNFRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESS 982
Query: 332 SKRMGVIIKEIPYQTNKSM-LVEKIA 356
K+ VI+ Y T+ ++ V K++
Sbjct: 983 DKKSPVIVDYKEYHTDTTVKFVVKLS 1008
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 169 (64.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 81/357 (22%), Positives = 153/357 (42%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
I +SM+ + R++P + DGLKP R++LF + L + + A V + +H HG
Sbjct: 790 ILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAGYVSKEAA-YH-HG 846
Query: 158 DNAVYDSLVRMAQDF--SLRYPLIRGHGNFGS--IDADPAAAMRYTECRLEALSEAMLLA 213
+ ++ +++ +AQ+F S + GNFGS AA+ RY RL L+ +
Sbjct: 847 EQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARK-IFH 905
Query: 214 DIDQDTVNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLC 272
+D+ + F FD+ + E NGA GI G +T+IP ++ ++V+ L
Sbjct: 906 PLDEPNLEF--QFDDGKLIEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLK 963
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
+ + E + P + G G + G R G EV +
Sbjct: 964 RRMGRDSSGDGEEKPFEPMTPW-----FRGWKGTPEP--DGPNRFKFNGIVEVNPQNPNE 1016
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVE-NKTLDGISDIRDESDRSGMRIVIELKRGADP 391
V + E+P + K+ E++ +K+ I D ++ +D + +I L+
Sbjct: 1017 ----VDVTELPIRMWTDDFKSKLEEIIRGDKSPSWIKDYKEYNDHQTVHFIIALEEKHMS 1072
Query: 392 SIVVNSLYRLTALQSSFSC-NMVGI-LDGQ-PKQMGLKEVLQAFLDFRCSVVERRAR 445
S + + L L + + N+V G+ K +E+++ + +R ++ R +
Sbjct: 1073 SALRDGLIEKFKLTKTVATTNLVAFDTRGKIHKYENPQEIMEEYYHYRLNLYGERKK 1129
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 166 (63.5 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 65/229 (28%), Positives = 110/229 (48%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 733 RSIPSLVDGLKPGQRKVLFTCVK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 788
Query: 166 VRMAQDF--SLRYPLIRGHGNFGS-IDADP-AAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S +++ G FG+ I+ AA+ RY L L++ +L +D +
Sbjct: 789 VNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAK-LLFPAVDSSLLK 847
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++QK E NGA GI G A IP ++ E+V+ + ++ N +
Sbjct: 848 FL--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRML-NHQD 904
Query: 281 TLQELLEY--MPGPDFPTGG---LIMGNLGILDAYRTGRGRITVRGKTE 324
L L Y G G L+ G + +LD + VR T+
Sbjct: 905 PLPMLPSYKNFKGTIHELGQNQYLVSGEVSVLDKNTIEISELPVRTWTQ 953
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 162 (62.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/378 (25%), Positives = 167/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPKDDQTLK 827
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 828 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEP 885
Query: 281 TLQELLEY--MPGPD---FPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G P +I G + IL++ + VR T+ +L
Sbjct: 886 -LPMLPSYKNFRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPML 944
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 945 NGTEKTPPLITDYREYHTDTT--VKFVVKMTEEKLA--------EAERVGLHKVFKLQT- 993
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L + +
Sbjct: 994 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLN 1049
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + IVE
Sbjct: 1050 NQARFILEKIDGKIIIVE 1067
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 158 (60.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 69/267 (25%), Positives = 124/267 (46%)
Query: 109 ALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSLV 166
++P + DGLKP R++LFA + + K K A++ G V + +H HG+ ++ ++V
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFK---RANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368
Query: 167 RMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNF 222
+AQD+ S L+ G FG+ +A+ R +L ++ + A D + + F
Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAH-DDNVLRF 427
Query: 223 VPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHN-PEA 280
+ ++E+Q+ E NGA G G +TNIP +N ELV + LI P+
Sbjct: 428 L--YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQK 485
Query: 281 TLQELLEYMPGPDF---PTGGLIMGNLGILDAYRTGRGRITVRGKTE------VE-LLDS 330
L + G P+ G + +LD + ++ T+ +E L++S
Sbjct: 486 ALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMES 545
Query: 331 KSKRMGVIIKEIPYQTNKSM-LVEKIA 356
K+ VI+ Y T+ ++ V K++
Sbjct: 546 SDKKSPVIVDYKEYHTDTTVKFVVKLS 572
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 158 (60.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 69/267 (25%), Positives = 124/267 (46%)
Query: 109 ALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSLV 166
++P + DGLKP R++LFA + + K K A++ G V + +H HG+ ++ ++V
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFK---RANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368
Query: 167 RMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNF 222
+AQD+ S L+ G FG+ +A+ R +L ++ + A D + + F
Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAH-DDNVLRF 427
Query: 223 VPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHN-PEA 280
+ ++E+Q+ E NGA G G +TNIP +N ELV + LI P+
Sbjct: 428 L--YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQK 485
Query: 281 TLQELLEYMPGPDF---PTGGLIMGNLGILDAYRTGRGRITVRGKTE------VE-LLDS 330
L + G P+ G + +LD + ++ T+ +E L++S
Sbjct: 486 ALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMES 545
Query: 331 KSKRMGVIIKEIPYQTNKSM-LVEKIA 356
K+ VI+ Y T+ ++ V K++
Sbjct: 546 SDKKSPVIVDYKEYHTDTTVKFVVKLS 572
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 170 (64.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 56/219 (25%), Positives = 101/219 (46%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G + P + + + + + I +S++ + R++P+V DG KP R++L+ + L S
Sbjct: 660 GTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSE 718
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGS--IDADP 192
+ A V E +H HG+ ++ +++ +AQ+F S L+ +G FG+
Sbjct: 719 LKVAQLAPYVSECTA-YH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKD 776
Query: 193 AAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIA 252
AAA RY L L+ + D ++ DE E NGA GI
Sbjct: 777 AAAARYIYTELNKLTRK-IFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIG 834
Query: 253 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPG 291
G +T IPP N E++ + L+++ E L+++ + G
Sbjct: 835 TGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG 871
Score = 52 (23.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 32/142 (22%), Positives = 58/142 (40%)
Query: 478 APSNSTASAAL------KDEFKLSE-----KQADAILD-MNLRRLTMLERKKFVDESKTL 525
APS++++S+ KDE +LS+ K+ I D M T E D+ T
Sbjct: 1264 APSSTSSSSIFDIKKEDKDEGELSKISNKFKKISTIFDKMGSTSATSKENTPEQDDVATK 1323
Query: 526 MEQILKLEELLS---SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPN- 581
Q + + ++K + + +Q+V+EL L D + D+ D IP
Sbjct: 1324 KNQTTAKKTAVKPKLAKKPVRK--QQKVVELSGESDLEILDSYTDREDSNKDEDDAIPQR 1381
Query: 582 -----DEMLLAISEKGYVKRMK 598
++ +K YV+ ++
Sbjct: 1382 SRRQRSSRAASVPKKSYVETLE 1403
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 307 LDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNK--SMLVEKIAEL 358
L+ Y+ + ++ R + EVE + K + +II++ TNK + +++++ L
Sbjct: 1002 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 1055
Score = 37 (18.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 317 ITVRGKTEVELLDSKSKR 334
+ + G++++E+LDS + R
Sbjct: 1350 VELSGESDLEILDSYTDR 1367
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 176 (67.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 94/418 (22%), Positives = 192/418 (45%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R+++F + + K K A++ G V + +H HG+ ++ ++
Sbjct: 712 RSIPCMVDGLKPGQRKVVFCCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLMMTI 767
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ +A+ RY L L+ +L +D + +
Sbjct: 768 VGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLAR-LLFPVVDDNLLK 826
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
+ N+D+ + E NG GI G A+ IP +++ E+++ + +I+ E
Sbjct: 827 Y--NYDDYLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEEP 884
Query: 281 TLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVI-I 339
+P + P+ G G +D + + G EV ++DS + + + +
Sbjct: 885 --------LPMVNLPS---YKGFKGTID--ELAKNQYVNNG--EVAIIDSTTIEITELPV 929
Query: 340 KE-IPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSL 398
K P T K ++E + E K I+D ++ + +R V+++ L
Sbjct: 930 KTWTPGLTYKENVLEVMLNGTE-KVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGL 988
Query: 399 YRLTALQSSFSCNMVGILD--GQPKQM-GLKEVLQAFLDFRCSVVERRARFKLSQV---- 451
+++ LQ+ +CN + + D G K+ ++++L+ F + R R + + +
Sbjct: 989 HKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGMLGAES 1048
Query: 452 ----KERRHIVEGIM--VGLDNLDR--VIRIVREAPSNSTASAALKDEFKLSEKQADA 501
+ R I+E I + ++N + +IR++++ +S A KD + E++ DA
Sbjct: 1049 AKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAWKDAQE-KEEEEDA 1105
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
+++GESD + L+S+ + R +++ +Y+
Sbjct: 1303 SDEGESDSDLELMSEETAPREKRERRAAVEKKYS 1336
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 473 RIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
R++ S A K+ K S+K+A ++ M
Sbjct: 1215 RVIPRITSTMKVQAVKKERGKGSKKEAGLVMKM 1247
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 160 (61.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 92/378 (24%), Positives = 169/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPKDDHTLR 826
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 827 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEP 884
Query: 281 TLQELLEY--MPGP--DFPTGGLIM-GNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G + + ++ G + ILD+ + +R T+ +L
Sbjct: 885 -LPMLPSYKNFKGTIEELASNQYVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPML 943
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 944 NGTEKTPSLITDYREYHTDTT--VKFVIKMTEEKLA--------EAERVGLHKVFKLQS- 992
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L S +
Sbjct: 993 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLN 1048
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + ++E
Sbjct: 1049 NQARFILEKI-DGKIVIE 1065
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 160 (61.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 94/378 (24%), Positives = 169/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L +L+ +L D T+
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLAR-LLFPPKDDHTLK 827
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 828 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEP 885
Query: 281 TLQELLEY--MPGPD---FPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G P +I G + IL++ + VR T+ +L
Sbjct: 886 -LPMLPSYKNFKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPML 944
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 945 NGTEKTPPLITDYREYHTDTT--VKFVVKMTEEKLA--------EAERVGLHKVFKLQT- 993
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L + +
Sbjct: 994 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLN 1049
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + I+E
Sbjct: 1050 NQARFILEKI-DGKIIIE 1066
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 159 (61.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 93/378 (24%), Positives = 169/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ + A D T+
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAK-DDHTLK 827
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 828 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEP 885
Query: 281 TLQELLEY--MPGPD---FPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G P +I G + IL++ + +R T+ +L
Sbjct: 886 -LPMLPSYKNFKGTVEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPML 944
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R+G+ V +L+
Sbjct: 945 NGTEKTPPLITDYREYHTDTT--VKFVVKMTEEKLA--------EAERAGLHKVFKLQT- 993
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L + +
Sbjct: 994 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLN 1049
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + I+E
Sbjct: 1050 NQARFILEKI-DGKIIIE 1066
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 156 (60.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 63/229 (27%), Positives = 108/229 (47%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 735 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEASLMMTI 790
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L +D + +
Sbjct: 791 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPVDDNVLR 849
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E V+ + L+ E
Sbjct: 850 FL--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEP 907
Query: 281 TLQELLEY--MPGP-DF--PTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
L L Y G D P +I G + ILD+ + VR T+
Sbjct: 908 -LPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQ 955
Score = 56 (24.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 46/214 (21%), Positives = 91/214 (42%)
Query: 411 NMVGILDGQ-PKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLD 469
N G +D P Q + + + E R KE+ ++E ++ G +
Sbjct: 916 NFKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQ--VLEPMLNGTEKTP 973
Query: 470 RVIRIVREAPSNSTASAALK-DEFKLSEKQADAI-----LDMNL--RRLTMLERKKFVD- 520
+I +E +++T +K E KL+E +A + L NL + + + F+
Sbjct: 974 PLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKK 1033
Query: 521 -ES-KTLMEQILKLE-ELLSSRKN-ILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI 576
ES + ++++ +L RK ++ ++ E +L N+ R +LE D G++ I
Sbjct: 1034 YESPQDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQ---ARF-ILEKID-GKIV-I 1087
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTI 610
+ P E++ + ++GY LQN+ I
Sbjct: 1088 ENKPKKELIQVLIQRGYESDPVKAWKELQNKAII 1121
Score = 37 (18.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 552 ELKNRFSTPRLSMLEDADSG 571
EL+N+ P +S+ E+ + G
Sbjct: 1114 ELQNKAIIPSVSISEEEEEG 1133
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 158 (60.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 93/378 (24%), Positives = 169/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPKDDHTLK 827
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ + E
Sbjct: 828 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNI-RLLMDGEE 884
Query: 281 TLQELLEY--MPGPD---FPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G P +I G + IL++ + +R T+ +L
Sbjct: 885 PLPMLPSYKNFKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPML 944
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 945 NGTEKTPPLITDYREYHTDTT--VKFVVKMTEEKLA--------EAERVGLHKVFKLQT- 993
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L + +
Sbjct: 994 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLN 1049
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + I+E
Sbjct: 1050 NQARFILEKI-DGKIIIE 1066
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 158 (60.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 94/378 (24%), Positives = 168/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 722 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 777
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 778 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPKDDQTLK 836
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 837 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEP 894
Query: 281 TLQELLEY--MPGPD---FPTGGLIMGNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G P +I G + IL++ + VR T+ +L
Sbjct: 895 -LPMLPSYKNFRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPML 953
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 954 NGTEKTPPLITDYREYHTDTT--VKFVVKMTEEKLA--------EAERVGLHKVFKLQT- 1002
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + + K GL KE L L + +
Sbjct: 1003 ---SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLN 1058
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + I+E
Sbjct: 1059 NQARFILEKI-DGKIIIE 1075
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 167 (63.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 55/203 (27%), Positives = 98/203 (48%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ + + + I +SM+ L R++P + DG+KP R++++ + + + K K
Sbjct: 770 VAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVL 825
Query: 144 RVVGEV--LGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSI---DADPAAAM 196
+ G+V L +H HGD +++ +++ +AQDF S + GNFGS AD ++A
Sbjct: 826 DLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSA- 883
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMA 256
RY RL + + D + ++ + D + E NGA GI G +
Sbjct: 884 RYIHTRLSPFARKIFHPH-DDPILKYLED-DGKEIEPWVYVPVVPMILINGADGIGTGWS 941
Query: 257 TNIPPHNLGELVDVLCALIHNPE 279
T+IP +N ++VD L +I E
Sbjct: 942 TSIPNYNPEDIVDNLKRMIRGEE 964
Score = 44 (20.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 85 VPVELHEEMTGSYI 98
+PVE+HEE G YI
Sbjct: 212 IPVEMHEEH-GMYI 224
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 167 (63.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 55/203 (27%), Positives = 98/203 (48%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ + + + I +SM+ L R++P + DG+KP R++++ + + + K K
Sbjct: 770 VAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVL 825
Query: 144 RVVGEV--LGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSI---DADPAAAM 196
+ G+V L +H HGD +++ +++ +AQDF S + GNFGS AD ++A
Sbjct: 826 DLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSA- 883
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMA 256
RY RL + + D + ++ + D + E NGA GI G +
Sbjct: 884 RYIHTRLSPFARKIFHPH-DDPILKYLED-DGKEIEPWVYVPVVPMILINGADGIGTGWS 941
Query: 257 TNIPPHNLGELVDVLCALIHNPE 279
T+IP +N ++VD L +I E
Sbjct: 942 TSIPNYNPEDIVDNLKRMIRGEE 964
Score = 44 (20.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 85 VPVELHEEMTGSYI 98
+PVE+HEE G YI
Sbjct: 212 IPVEMHEEH-GMYI 224
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 165 (63.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 55/184 (29%), Positives = 90/184 (48%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
I +SM+ LL R++P + DGLKP R+ILF + L + + V E +H HG
Sbjct: 693 IQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKEIKVAQFSGYVSEH-SAYH-HG 749
Query: 158 DNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSID--ADPAAAMRYTECRLEALSEAMLLA 213
+ ++ ++ MAQDF S L++ +G FG+ D AA+ RY L ++ ++
Sbjct: 750 EQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPK 809
Query: 214 DIDQDTVNFVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCA 273
D D +N++ D E NG+ GI G +T IP +N ++V L
Sbjct: 810 D-DDILLNYLDE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRR 867
Query: 274 LIHN 277
L+++
Sbjct: 868 LLND 871
Score = 40 (19.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 85 VPVELHEEMTGSYI 98
+PVE+H+E G Y+
Sbjct: 122 IPVEIHQE-EGVYV 134
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 156 (60.0 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 63/229 (27%), Positives = 108/229 (47%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 714 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEASLMMTI 769
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L +D + +
Sbjct: 770 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPVDDNVLR 828
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E V+ + L+ E
Sbjct: 829 FL--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEP 886
Query: 281 TLQELLEY--MPGP-DF--PTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
L L Y G D P +I G + ILD+ + VR T+
Sbjct: 887 -LPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQ 934
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 156 (60.0 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 118/542 (21%), Positives = 228/542 (42%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DG KP R++LF + + K K A++ G V + +H HG+ A+ ++
Sbjct: 722 RSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F S L++ G FG+ AA+ RY L +L+ +L +D + +
Sbjct: 778 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLAR-LLFPAVDDNLLK 836
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G A +P ++ E+V+
Sbjct: 837 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVN----------- 883
Query: 281 TLQELLEYM-PGPDFPTGGLIMGNLGIL--DAYRTGRGRITVRGKTEVELLDSKSKRMGV 337
++ +LE + P P P G + L + Y G I V + VE+ + +
Sbjct: 884 NVRRMLEGLDPHPMLPNYKNFKGTIQELGQNQYAVS-GEIFVVDRNTVEITELPVRTWTQ 942
Query: 338 IIKEIPYQTNKSML--VEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVV 395
+ KE Q + ML +K L+ + + ++ + + E K + +
Sbjct: 943 VYKE---QVLEPMLNGTDKTPALISD-----YKEYHTDTTVKFVVKMTEEKLAQAEAAGL 994
Query: 396 NSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV---- 451
+ +++L + S + + K ++++L+ F D R S R + + +
Sbjct: 995 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1054
Query: 452 ----KERRHIVEGIM--VGLDNLDR--VIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+ R I+E I + ++N + +I+++ + S A K+ EK A+
Sbjct: 1055 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEA---QEKAAEEED 1111
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQ------EVIELKNRF 557
N + + S IL + +++ + +LI+Q EV +LK +
Sbjct: 1112 SQNQHDDSSSDSGT---PSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRK- 1167
Query: 558 STPRLSMLED--ADSGQLDDIDIIPNDEMLLAISEKGYVKRM-KPNTFNLQNRGTIGKSV 614
+P ED A +LD ++ +++L +S K ++ KP LQ T+
Sbjct: 1168 -SPSDLWKEDLAAFVEELDKVEAQEREDILAGMSGKAIKGKVGKPKVKKLQLEETMPSPY 1226
Query: 615 GK 616
G+
Sbjct: 1227 GR 1228
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 154 (59.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 63/229 (27%), Positives = 108/229 (47%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 714 RSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKGAQLAGSVAEMSSYH-HGEASLMMTI 769
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L +D + +
Sbjct: 770 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPPVDDNVLR 828
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E V+ + L+ E
Sbjct: 829 FL--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEP 886
Query: 281 TLQELLEY--MPGP-DF--PTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
L L Y G D P +I G + ILD+ + VR T+
Sbjct: 887 -LPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQ 934
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 152 (58.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 91/378 (24%), Positives = 168/378 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTR-LLFPPKDDHTLK 826
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ E
Sbjct: 827 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEP 884
Query: 281 TLQELLEY--MPGP--DFPTGGLIM-GNLGILDAYRTGRGRITVRGKTEV-------ELL 328
L L Y G + + ++ G + IL++ + +R T+ +L
Sbjct: 885 -LPMLPSYKNFKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPML 943
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 944 NGTEKTPPLITDYREYHTDTT--VKFVIKMTEEKLA--------EAERVGLHKVFKLQT- 992
Query: 389 ADPSIVVNS--LYRLTALQSSFSCNMVGILDG----QPKQMGL-KEVLQAFLDFRCSVVE 441
S+ NS L+ + ++ IL + K GL KE L L + +
Sbjct: 993 ---SLTCNSMVLFDHVGCLKKYD-TVLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLN 1048
Query: 442 RRARFKLSQVKERRHIVE 459
+ARF L ++ + + I+E
Sbjct: 1049 NQARFILEKI-DGKIIIE 1065
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 152 (58.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 90/377 (23%), Positives = 166/377 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 711 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 766
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 767 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPSKDDHTLR 825
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALI--HNP 278
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ P
Sbjct: 826 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEP 883
Query: 279 EATLQELLEYMPGPDFPTGG--LIMGNLGILDAYRTGRGRITVRGKTEV-------ELLD 329
L Y + +I G + IL++ + +R T+ +L+
Sbjct: 884 LPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLN 943
Query: 330 SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 944 GTEKTPPLITDYREYHTDTT--VKFVIKMTEEKLA--------EAERVGLHKVFKLQT-- 991
Query: 390 DPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVER 442
S+ NS L+ + ++ IL + + K GL KE L L S +
Sbjct: 992 --SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNN 1048
Query: 443 RARFKLSQVKERRHIVE 459
+ARF L ++ + + ++E
Sbjct: 1049 QARFILEKI-DGKIVIE 1064
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 152 (58.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 90/377 (23%), Positives = 166/377 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPSKDDHTLR 826
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALI--HNP 278
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ P
Sbjct: 827 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEP 884
Query: 279 EATLQELLEYMPGPDFPTGG--LIMGNLGILDAYRTGRGRITVRGKTEV-------ELLD 329
L Y + +I G + IL++ + +R T+ +L+
Sbjct: 885 LPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLN 944
Query: 330 SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 945 GTEKTPPLITDYREYHTDTT--VKFVIKMTEEKLA--------EAERVGLHKVFKLQT-- 992
Query: 390 DPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVER 442
S+ NS L+ + ++ IL + + K GL KE L L S +
Sbjct: 993 --SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNN 1049
Query: 443 RARFKLSQVKERRHIVE 459
+ARF L ++ + + ++E
Sbjct: 1050 QARFILEKI-DGKIVIE 1065
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 152 (58.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 90/377 (23%), Positives = 166/377 (44%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R++LF + + K K A++ G V + +H HG+ ++ ++
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ +AQ+F S L++ G FG+ +A+ RY L L+ +L D T+
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLAR-LLFPSKDDHTLR 826
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALI--HNP 278
F+ +D++Q+ E NGA GI G + IP ++ E+V+ + L+ P
Sbjct: 827 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEP 884
Query: 279 EATLQELLEYMPGPDFPTGG--LIMGNLGILDAYRTGRGRITVRGKTEV-------ELLD 329
L Y + +I G + IL++ + +R T+ +L+
Sbjct: 885 LPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLN 944
Query: 330 SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
K +I Y T+ + V+ + ++ E K E++R G+ V +L+
Sbjct: 945 GTEKTPPLITDYREYHTDTT--VKFVIKMTEEKLA--------EAERVGLHKVFKLQT-- 992
Query: 390 DPSIVVNS--LYRLTALQSSFSCNMVGIL----DGQPKQMGL-KEVLQAFLDFRCSVVER 442
S+ NS L+ + ++ IL + + K GL KE L L S +
Sbjct: 993 --SLTCNSMVLFDHVGCLKKYD-TVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNN 1049
Query: 443 RARFKLSQVKERRHIVE 459
+ARF L ++ + + ++E
Sbjct: 1050 QARFILEKI-DGKIVIE 1065
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 141 (54.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 46/169 (27%), Positives = 82/169 (48%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL--GKFHPHGDNAVYDSL 165
R++P++ DG KP R++L+ + L + K A++VG + +H HG++++ ++
Sbjct: 743 RSIPNIMDGWKPGQRKVLYGCFKRNLKNEC---KVAQLVGYIAEHSAYH-HGESSLQQTI 798
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSID--ADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
+ MAQ F S + G FGS A+A RY +L A S + + D +
Sbjct: 799 INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKL-ASSTRSIFNEYDDPILK 857
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVD 269
++ N +E QK E NG GI G ++ IP +N ++++
Sbjct: 858 YL-N-EEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIN 904
Score = 63 (27.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 55/290 (18%), Positives = 116/290 (40%)
Query: 310 YRTGRGRITVRGKTEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGI 367
Y+ +GRI GK+ E + +K + I E+P + E + EL+ ++ I
Sbjct: 922 YKDFKGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLI 981
Query: 368 SDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKE 427
D D S + I++ L ++ L+S+ + + + D + K
Sbjct: 982 IDYIDNSSHEDVCFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYAS 1041
Query: 428 VLQAFLDF---RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVR-EAPSNST 483
L DF R + R + +S++++ + I+ + ++ I+ E N
Sbjct: 1042 ELDILKDFCFHRLNAYTDRKNYLISKLEKEKRIIS------NKTKFILAIINGELVVNKK 1095
Query: 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS--SRKN 541
L +E L K D D++ + + ++ +D ++ + EE+++ + K+
Sbjct: 1096 KKKILVEE--LYRKGYDPYKDIHKLKKEEIFEQELLDAAENPEDN----EEIIAGVTVKD 1149
Query: 542 ILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEK 591
L+ + L LS L++ + +L+ + I + M L EK
Sbjct: 1150 YNYLLNMPIFSLTLEKVEELLSQLKEKEQ-ELEILKSITVETMWLKDIEK 1198
Score = 49 (22.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 39/190 (20%), Positives = 82/190 (43%)
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
F L+ ++ + +L + LE K + ++ I K+EE + ++N+ +L +E
Sbjct: 1159 FSLTLEKVEELLSQLKEKEQELEILKSITVETMWLKDIEKVEEAIEFQRNV-ELANREE- 1216
Query: 552 ELKNRFSTPRLSM----LEDADSGQL---DDIDIIPNDEMLLAISEKGYVKRMKPNTFNL 604
N+F R + + +L D+ + +D I+ +K+ T N
Sbjct: 1217 --SNKFKVARKKIGAGFKKKKKKKKLTSDDESEGDTSDSSEFMINSLN-IKKNSKKTPNK 1273
Query: 605 QNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY-KIPECTRNAAGTP 663
+N ++ K + K+ ++ D +L S+ I S +Y K + N+ TP
Sbjct: 1274 KNNNSVRKKIRKIDSGISVDDN---NTQTPILINSNE-IDDSNISYSKTGDNAYNSDDTP 1329
Query: 664 LV-QILSLSD 672
L+ +I++ S+
Sbjct: 1330 LINKIINTSN 1339
Score = 43 (20.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 322 KTEVELLDSKSKRMGV-IIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
K E L K K + I+K I +T +EK+ E +E + +++ R+ES++
Sbjct: 1165 KVEELLSQLKEKEQELEILKSITVETMWLKDIEKVEEAIEFQRNVELAN-REESNK 1219
Score = 40 (19.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
+A D ++ LE++K + +KT + EL+ ++K L+E+ + + +
Sbjct: 1055 NAYTDRKNYLISKLEKEKRIISNKTKFILAIINGELVVNKKKKKILVEELYRKGYDPYKD 1114
Query: 560 PRLSMLEDADSGQLDDIDIIP--NDEMLLAISEKGYVKRMKPNTFNL 604
E+ +L D P N+E++ ++ K Y + F+L
Sbjct: 1115 IHKLKKEEIFEQELLDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSL 1161
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 151 (58.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 48/167 (28%), Positives = 86/167 (51%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL--GKFHPHGDNAVYDSL 165
R++P++ DGLK HR+ L++ + L +K K A+++G V +H HG+ ++Y ++
Sbjct: 769 RSIPNIVDGLKTSHRKTLYSCFKRNL--KKEIK-VAQLIGYVSEHSAYH-HGEASLYSTI 824
Query: 166 VRMAQDF--SLRYPLIRGHGNFGSIDAD--PAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V MAQ+F S L+ G++G+ A ++ RY RL ++ A+ AD D ++
Sbjct: 825 VGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHAD-DDPILS 883
Query: 222 FVPNFDESQKEXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELV 268
V + D + + NG GI G ++ IP +N +L+
Sbjct: 884 CVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLI 929
Score = 51 (23.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 47/182 (25%), Positives = 78/182 (42%)
Query: 426 KEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS 485
K+ L L S + +ARF L+ V + I V L N + ++ R NS S
Sbjct: 1129 KDFLSERLSEEYSRLSNKARFILAVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKS 1188
Query: 486 AALKDEFKLSEK---QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
A +D+ K + + DA + + + E + D++K + +L L + + +
Sbjct: 1189 A--RDKIKKKKNAFDEEDAAISSDEEKDGAQEEQD--DDTKGY-DYLLSLPLWSLTLERV 1243
Query: 543 LQLIEQEVIELKN---RFSTPRLSMLE-DADSGQ--LDDIDIIPNDEMLLAISEKGYVKR 596
+LIE+ + K STP + + D D+ + LDD D DE L +E KR
Sbjct: 1244 KKLIEERDSKKKEWDILLSTPIQEIYKRDLDALEKALDDQDAY--DESLKNQTES-LKKR 1300
Query: 597 MK 598
K
Sbjct: 1301 TK 1302
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 138 (53.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 62/261 (23%), Positives = 120/261 (45%)
Query: 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDNAVYDSL 165
R++P + DGLKP R+++F + + K K A++ G V + +H HG+ ++ ++
Sbjct: 693 RSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMTI 748
Query: 166 VRMAQDF--SLRYPLIRGHGNFGS--IDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
V +AQ+F + L+ G FG+ A+ RY + L+ ++ +D ++
Sbjct: 749 VNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTR-LIYHPLDDPLLD 807
Query: 222 FVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280
+ D+ QK E NGA GI G +T I +N E++ L +I+ E
Sbjct: 808 Y--QVDDGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEP 865
Query: 281 TLQE--LLEYMPGPDFPTGGLIM--GNLGILDAYRTGRGRITVRGKTE------VELLDS 330
++ ++ ++ + G + GN+ IL R + V T+ +E L +
Sbjct: 866 SVMHPWYKNFLGRMEYVSDGRYIQTGNIQILSGNRLEISELPVGVWTQNYKENVLEPLSN 925
Query: 331 KSKRMGVIIKEI-PYQTNKSM 350
++++ II E Y T+ ++
Sbjct: 926 GTEKVKGIISEYREYHTDTTV 946
>RGD|1586156 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10116 "Rattus
norvegicus" [GO:0001764 "neuron migration" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISO]
[GO:0005080 "protein kinase C binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006265 "DNA topological
change" evidence=ISO] [GO:0007409 "axonogenesis" evidence=ISO]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0042826 "histone deacetylase binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO] [GO:0005694
"chromosome" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0000792 "heterochromatin" evidence=ISO] InterPro:IPR002205
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 SMART:SM00434
RGD:1586156 GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0042826 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819
GO:GO:0006312 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 HSSP:P06786 EMBL:D14046 IPI:IPI00763824 PIR:B48536
UniGene:Rn.104585 UniGene:Rn.226280 ProteinModelPortal:Q63177
ChEMBL:CHEMBL4672 Genevestigator:Q63177 Uniprot:Q63177
Length = 214
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 39/134 (29%), Positives = 68/134 (50%)
Query: 143 ARVVGEV--LGKFHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAM 196
A++ G V + +H HG+ A+ ++V +AQ+F S L++ G FG+ AA+
Sbjct: 1 AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGM 255
RY L +L+ +L +D + + F+ +D++Q+ E NGA GI G
Sbjct: 60 RYIFTMLSSLAR-LLFPAVDDNLLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGW 116
Query: 256 ATNIPPHNLGELVD 269
A +P ++ E+VD
Sbjct: 117 ACKLPNYDAREIVD 130
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 154 (59.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 94/383 (24%), Positives = 174/383 (45%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P++ + + I +SM+ + R++P V DGLKP R++++ + L K +R
Sbjct: 723 IPID--DFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHET---KVSR 776
Query: 145 VVGEVLGK--FHPHGDNAVYDSLVRMAQDF--SLRYPLIRGHGNFG--SIDADPAAAMRY 198
+ G V + +H HG+ ++ ++V +AQ+F S L+ +G FG S A+A RY
Sbjct: 777 LAGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRY 835
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQK-EXXXXXXXXXXXXXNGASGIAVGMAT 257
L L+ + ++ DQ +N+ N DE Q E NGA GI G +T
Sbjct: 836 LNTALSPLARVLFNSNDDQ-LLNY-QN-DEGQWIEPEYYVPILPMVLVNGAEGIGTGWST 892
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGIL--DAYRTGRG 315
IP +N ++ L +++ E LE M P + G G++ + D Y+ G
Sbjct: 893 FIPNYNPKDITANLRHMLNG------EPLEIMT-PWY-RG--FRGSITKVAPDRYKIS-G 941
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAE-LVENKTLDGISDIRDES 374
I G+ +VE+ + + +KE Y + EKI + +V+ ++ G ++
Sbjct: 942 IINQIGENKVEITELPIRFWTQDMKE--YLEAGLVGTEKIRKFIVDYESHHGEGNVHFNV 999
Query: 375 D--RSGMRIVIELKRGADPSIVVN-SLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
+GM K + S+ V L R A + + + G + K ++++L
Sbjct: 1000 TLTEAGM------KEALNESLEVKFKLSRTQATSNMIAFDASGRIK---KYDSVEDILTE 1050
Query: 432 FLDFRCSVVERRARFKLSQVKER 454
F + R +RR ++++++R
Sbjct: 1051 FYEVRLRTYQRRKEHMVNELEKR 1073
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 597 MKPNTF-----NLQNRGTIGKSVGKLRVNDAMSDFIV 628
+KP+T + +N+G SV K D DFI+
Sbjct: 1375 LKPSTITSTKASAKNKGKKASSVKKQSPEDDDDDFII 1411
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 68 NGNGSVATVGPNVSPR 83
NGN +V+T ++PR
Sbjct: 69 NGNSNVSTQYQRLTPR 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 941 892 0.00087 122 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 612 (65 KB)
Total size of DFA: 355 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 76.67u 0.09s 76.76t Elapsed: 00:00:03
Total cpu time: 76.71u 0.09s 76.80t Elapsed: 00:00:03
Start: Sat May 11 11:38:43 2013 End: Sat May 11 11:38:46 2013