BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002290
(941 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359487079|ref|XP_002271674.2| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 925
Score = 1513 bits (3916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/923 (81%), Positives = 819/923 (88%), Gaps = 19/923 (2%)
Query: 6 FTNTS----PMALS---STLRFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTP 58
FT T+ PMA S S LR S L H+ + RFLS ++ PP +P
Sbjct: 5 FTPTALFHPPMAFSAASSLLRHQFSLPL-HHRLSYLRFLS-----VTAPPRKP-----HL 53
Query: 59 ILASKDEERNGNGS-VATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGL 117
+ A + ++ GNGS V RIVP ELH+E T +Y+ Y+MSVLLGRALPDVRDGL
Sbjct: 54 VRARRRDDEEGNGSLVLKEKDGRDGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGL 113
Query: 118 KPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYP 177
KPVHRRILFAMHELGLSSRKP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQDFSLR P
Sbjct: 114 KPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCP 173
Query: 178 LIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLP 237
LI+GHGNFGS+DADP AAMRYTECRLEAL+EAMLLAD++QDTV+F+PNFD SQKEPSLLP
Sbjct: 174 LIQGHGNFGSVDADPPAAMRYTECRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLP 233
Query: 238 ARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTG 297
ARLPTLLLNG+SGIAVGMATNIPPHN+GELVDVLC LI NPEATLQELLEYMPGPDFPTG
Sbjct: 234 ARLPTLLLNGSSGIAVGMATNIPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTG 293
Query: 298 GLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAE 357
GLIMGN+GIL+AYRTGRGRI VRGKTEVELLDSK+KR VIIKEIPYQTNKS LVEKIAE
Sbjct: 294 GLIMGNIGILEAYRTGRGRIIVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAE 353
Query: 358 LVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILD 417
LVENK+LDGISDIRDESDRSGMRIVIELKRG+DPSIV+N LYRLTALQSSFSCNM+GILD
Sbjct: 354 LVENKSLDGISDIRDESDRSGMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILD 413
Query: 418 GQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVRE 477
GQPK MGLKE+LQAFLDFRCSVVERRARFKLSQ +ERRHIVEGI+VGLDNLD VIR+++E
Sbjct: 414 GQPKLMGLKELLQAFLDFRCSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKE 473
Query: 478 APSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
APSN+ AS L++EF LSE+QA+AILD++LRR+T LER+KFV ESK+LMEQI KL+ELLS
Sbjct: 474 APSNAMASTGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLS 533
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SRK ILQLIEQE IELKNRFSTPR SMLED DSGQL+D+D+IPN+EMLLA+SEKGYVKRM
Sbjct: 534 SRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRM 593
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVC AHD+VLYFSDRGIV+SARAYKIPECTR
Sbjct: 594 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTR 653
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717
AAGTPLVQIL LSDGERITSIIPVSEFA DQFL+MLTMNGYIKKVSLN FSSIR+TGII
Sbjct: 654 TAAGTPLVQILCLSDGERITSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGII 713
Query: 718 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKM 777
AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC+IIR+L RNTRGS+AMRLK GDKM
Sbjct: 714 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRALGRNTRGSIAMRLKQGDKM 773
Query: 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
ASMDIIPAA+ KDLE+ ED S + +GPWLLFVSESG GKRVPLS FR PLNRVGL
Sbjct: 774 ASMDIIPAAIRKDLEKALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGL 833
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
IGYKFSAED LAAVFVVGFSL EDGESDEQVVLVSQSGT+NRIKV DISIQ+R+ARGVIL
Sbjct: 834 IGYKFSAEDHLAAVFVVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVIL 893
Query: 898 MRLELSGKIQSASLISVTEPETD 920
MRLE +GKIQSASL+S TE ETD
Sbjct: 894 MRLEYAGKIQSASLMSATETETD 916
>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
Length = 932
Score = 1452 bits (3758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/904 (79%), Positives = 792/904 (87%), Gaps = 11/904 (1%)
Query: 25 FLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILASKDEERNGNGSV----ATVGPNV 80
FL H RF SS R RP SR + D+ NG+ V
Sbjct: 26 FLHHRSVSDLRFSSSSPRI------RPVVQSRRREEPATDDSENGSLLVKDPNGGSPGGG 79
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R+V ELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS+KPFK
Sbjct: 80 NGRVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFK 139
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
KCARVVGEVLGKFHPHGD AVYD+LVRMAQDFSLR PLI+GHGNFGS+DADP AAMRYTE
Sbjct: 140 KCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTE 199
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
CRL+ L+EA+ LAD++QDTV+FVPNFD SQKEPSL P RLPTLLLNG+SGIAVGMAT IP
Sbjct: 200 CRLDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIP 259
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG+IMGN GILDAYR+G+GRI VR
Sbjct: 260 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAYRSGQGRIVVR 319
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
GKT+VELLDSK+KR VIIKEIPYQTNK+ LVEKIAELVE+K LDGISDIRDESDRSGMR
Sbjct: 320 GKTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMR 379
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKRGADPSIV+N+LYRLT LQSSFSCNMVGILDGQPKQMGLKE+LQAFLDFRCSVV
Sbjct: 380 IVIELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVV 439
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERRA FKLS+ ++RRHIVEG+M GLDNLDRV+ I+R+A SN+ ASA L++EF LSEKQA+
Sbjct: 440 ERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAE 499
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILD++LRRLT+LE KKFV+ESK+LMEQI KLEELLSSR NILQLIEQE +ELKN+FS P
Sbjct: 500 AILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNP 559
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R SMLED+DSGQL+DID+IPN+EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR +
Sbjct: 560 RRSMLEDSDSGQLEDIDVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDS 619
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DAMSDFIVC AHD VLYFSD+GIVYSA AYKIPECTR AAGTPL+Q LSLSDGERITSII
Sbjct: 620 DAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSII 679
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF DQFL+MLT+NGYIKKVSLN FS+IR+TGIIAIQLVPGDELKWVRCCTN DLVA
Sbjct: 680 PVSEFVEDQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVA 739
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
MASQNGMVIL+SC+ IR+L RNTRG VAMRL++GDK+ASMDIIPA+L KDLE +DS +
Sbjct: 740 MASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEVASKDSEN 799
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
N KG +GPWLLFVSESGHGKRVPLSSF++ LNRVGLIGYKF ED LAAVF VGFSL E
Sbjct: 800 NNKG-TGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSLTE 858
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
DGESDEQVVLVSQSGTVNRIKVRDISIQ+R+ARGVILMRLE +GKIQS SLIS +PE +
Sbjct: 859 DGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGKIQSTSLISAADPELE 918
Query: 921 LFLP 924
P
Sbjct: 919 ELAP 922
>gi|449458077|ref|XP_004146774.1| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 923
Score = 1441 bits (3731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/920 (79%), Positives = 798/920 (86%), Gaps = 26/920 (2%)
Query: 12 MALSSTLRFSSSFFLFH--------NHCRHARFLSSPRRFLSFPPSRPPPSSR------- 56
MA SS LR S + L H N S RFLS S S R
Sbjct: 1 MASSSGLRIS--YLLRHQLAPPLVSNRFTRTCLGLSELRFLSTKNSTASRSLRLAKSGRR 58
Query: 57 -TPILASKDEERNGNGSVATV--GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDV 113
P+ D+ ++GNGSVA G RIV LH+E T +Y+ Y+MSVLLGRALPDV
Sbjct: 59 DEPVKDEGDDGQDGNGSVAVKKDGGGSDGRIVHTALHKEATDAYMAYAMSVLLGRALPDV 118
Query: 114 RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS 173
RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS
Sbjct: 119 RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS 178
Query: 174 LRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEP 233
LR PLI+GHGNFGSIDADP AAMRYTECRLEALSEAMLL+D++ +TV+FVPNFD SQKEP
Sbjct: 179 LRSPLIQGHGNFGSIDADPPAAMRYTECRLEALSEAMLLSDLEMNTVDFVPNFDNSQKEP 238
Query: 234 SLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPD 293
SLLPARLPTLLLNG+SGIAVGMATNIPPHNLGE+VD LC LIHNPEATLQELLEYMPGPD
Sbjct: 239 SLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEVVDALCVLIHNPEATLQELLEYMPGPD 298
Query: 294 FPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVE 353
FPTGGLIMGN GIL+AYRTGRGRITVRGKTEVELLDSK+KR VIIKEIPYQTNKS LVE
Sbjct: 299 FPTGGLIMGNNGILEAYRTGRGRITVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSALVE 358
Query: 354 KIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMV 413
+IAELVENKTLDGISDIRDESDR+GMRIVIELKRGADPSIV N+LYRLT+LQSSFSCNMV
Sbjct: 359 RIAELVENKTLDGISDIRDESDRTGMRIVIELKRGADPSIVQNNLYRLTSLQSSFSCNMV 418
Query: 414 GILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIR 473
GI++GQPK MGLKE+LQAFLDFRCSVVERRARFKL +ERRHIVEGI++GLDNLD VIR
Sbjct: 419 GIINGQPKLMGLKELLQAFLDFRCSVVERRARFKLLHAQERRHIVEGIVIGLDNLDGVIR 478
Query: 474 IVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLE 533
++REA S+S ASA+L+ +F LSEKQA+A+LD+NLRRLT LERKKF+DESK+LME I KLE
Sbjct: 479 LIREASSHSIASASLRTQFNLSEKQAEAVLDINLRRLTHLERKKFIDESKSLMENISKLE 538
Query: 534 ELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGY 593
ELLSSR NILQLIEQE ELK++F PR S+LED DSGQ++DID+IPN+EMLLA SEKGY
Sbjct: 539 ELLSSRNNILQLIEQEATELKDKFPNPRRSVLEDTDSGQVEDIDVIPNEEMLLAFSEKGY 598
Query: 594 VKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIP 653
VKRMKPNTFNLQ+RGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD+GIVYSARAYKIP
Sbjct: 599 VKRMKPNTFNLQHRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDKGIVYSARAYKIP 658
Query: 654 ECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT 713
EC R AAGTPLVQ+LSLSDGERITSIIPVSEF GDQFL+MLT GYIKKVSLN FSSIR+
Sbjct: 659 ECGRTAAGTPLVQVLSLSDGERITSIIPVSEFEGDQFLLMLTAYGYIKKVSLNFFSSIRS 718
Query: 714 TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD 773
TGIIAIQLV GDELKWVR CTND+LVAMASQNGMVILSSCD IR+L RNTRGSVAM+LK
Sbjct: 719 TGIIAIQLVSGDELKWVRRCTNDNLVAMASQNGMVILSSCDTIRALGRNTRGSVAMKLKT 778
Query: 774 GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLN 833
GDKMASMDIIPAA+ DLER ++ K S+GPWLLFVSESG GKRVPL SFR PL
Sbjct: 779 GDKMASMDIIPAAVWNDLER------NSSKSSNGPWLLFVSESGVGKRVPLKSFRLSPLR 832
Query: 834 RVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
RVGLIG KFS++DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD+SIQ+R+AR
Sbjct: 833 RVGLIGCKFSSQDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRFAR 892
Query: 894 GVILMRLELSGKIQSASLIS 913
GVILMRL+ +GKIQSASLIS
Sbjct: 893 GVILMRLDHAGKIQSASLIS 912
>gi|356529056|ref|XP_003533113.1| PREDICTED: LOW QUALITY PROTEIN: DNA gyrase subunit A,
chloroplastic/mitochondrial-like [Glycine max]
Length = 924
Score = 1439 bits (3726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/916 (78%), Positives = 803/916 (87%), Gaps = 23/916 (2%)
Query: 13 ALSSTLRFSSSFFLFHNHCRHARFLSSPRRFLSF-PPSRPPPSSRTPILASKDEERNGNG 71
++S TL SS L RHA S RFLS P RP + R+ +D+E NG
Sbjct: 14 SISKTLTLSSPLRL-----RHA---PSELRFLSARAPRRPASAFRSA--RRRDDE---NG 60
Query: 72 SVATVGPNVSP-------RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRI 124
SV T + R+VP ELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRI
Sbjct: 61 SVTTAASATTDNGYVSEGRVVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRI 120
Query: 125 LFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGN 184
LFAMHELGLSS+KPFKKCARVVGEVLGKFHPHGD AVYDSLVRMAQDFSLR PLI+GHGN
Sbjct: 121 LFAMHELGLSSKKPFKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIQGHGN 180
Query: 185 FGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLL 244
FGSIDADP AAMRYTECRL+ L+EAMLL D++QDTV+FVPNFD SQKEPSLLPARLPTLL
Sbjct: 181 FGSIDADPPAAMRYTECRLDDLTEAMLLTDLEQDTVDFVPNFDNSQKEPSLLPARLPTLL 240
Query: 245 LNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNL 304
LNG+SGIAVGMATNIPPHNLGE+VDVLC LIHNPEATLQELLEYMPGPDFPTGGLIMGNL
Sbjct: 241 LNGSSGIAVGMATNIPPHNLGEVVDVLCVLIHNPEATLQELLEYMPGPDFPTGGLIMGNL 300
Query: 305 GILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTL 364
GIL+AYRTGRGR+ +RGKT++ELLDSK+KR +IIKEIPYQTNK+ LVEKIAELVENK+L
Sbjct: 301 GILEAYRTGRGRVIIRGKTDIELLDSKTKRTAIIIKEIPYQTNKATLVEKIAELVENKSL 360
Query: 365 DGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMG 424
DGISDIRDESDRSGMRIVIELKRG+DP IV+N+LYRLT+LQS+FSCNMVGIL+GQPKQMG
Sbjct: 361 DGISDIRDESDRSGMRIVIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNGQPKQMG 420
Query: 425 LKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA 484
LKE+LQAFLDFRCSVVERRARFKLSQ +ERRHIVEGI++G DNLD VIRI+REA SNS A
Sbjct: 421 LKELLQAFLDFRCSVVERRARFKLSQAQERRHIVEGILIGFDNLDGVIRIIREASSNSAA 480
Query: 485 SAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQ 544
+A L++ F LSEKQA+A+LD++LRRL++ E FV ESK+LMEQI KLEELLSSRKNIL+
Sbjct: 481 AAGLRNAFSLSEKQAEALLDISLRRLSLRESGNFVAESKSLMEQISKLEELLSSRKNILE 540
Query: 545 LIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNL 604
LIEQE IELK++FS PR SMLED D+GQL+DID+IPN+EM+LA+SEKGY+KRMKP+TFNL
Sbjct: 541 LIEQEAIELKSKFSNPRRSMLEDTDNGQLEDIDVIPNEEMILALSEKGYMKRMKPSTFNL 600
Query: 605 QNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPL 664
QNRGTIGKSVGKL+VND+MSDF+VC AHDHVLYFSD+G VYSARAYKIPEC+R AAGTPL
Sbjct: 601 QNRGTIGKSVGKLKVNDSMSDFLVCHAHDHVLYFSDKGTVYSARAYKIPECSRTAAGTPL 660
Query: 665 VQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPG 724
VQILSLSDGERITSIIPVSEFA DQFL+MLTM GYIK+VSLNLFSSIR+ GIIAIQLVPG
Sbjct: 661 VQILSLSDGERITSIIPVSEFAEDQFLLMLTMQGYIKRVSLNLFSSIRSIGIIAIQLVPG 720
Query: 725 DELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
DELKWVR C+NDD VAMAS NGMV+LS C IR+LSRNTRG+ AMRLK GDKMAS+DIIP
Sbjct: 721 DELKWVRLCSNDDFVAMASHNGMVMLSQCSKIRTLSRNTRGAPAMRLKKGDKMASVDIIP 780
Query: 785 AALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844
AA+ +LE T + N K +GPWLLFVSE+G+GKRVPLSSFR LNRVGLIGYKFSA
Sbjct: 781 AAMWNNLETTSKFPGINAKSQNGPWLLFVSENGYGKRVPLSSFRISSLNRVGLIGYKFSA 840
Query: 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
EDRLAAVFVVGFS AEDGESDEQVVLVSQSGTVNRIKVRDISIQ+R+ARGVILMRL+ SG
Sbjct: 841 EDRLAAVFVVGFSSAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHSG 900
Query: 905 KIQSASLISVT--EPE 918
KIQSASLIS T EPE
Sbjct: 901 KIQSASLISATDCEPE 916
>gi|357438765|ref|XP_003589659.1| DNA gyrase subunit A [Medicago truncatula]
gi|355478707|gb|AES59910.1| DNA gyrase subunit A [Medicago truncatula]
Length = 992
Score = 1407 bits (3643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/987 (72%), Positives = 804/987 (81%), Gaps = 77/987 (7%)
Query: 12 MALSSTLRFSS-SFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILAS--KDE-ER 67
MA SS LR + S F R +S RFLS R P +S AS +DE ER
Sbjct: 1 MAFSSALRLLTLSPFTPTTRLSFLRRTTSDLRFLSASTRRRPSTSIKAAAASVRRDEPER 60
Query: 68 NGNGSVATVGPNVSP-------RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPV 120
+GNGSV V S RIV ELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPV
Sbjct: 61 DGNGSVTVVDNGSSDVVKRSEGRIVLTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPV 120
Query: 121 HRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIR 180
HRRILFAMHELGLSS+KPFKKCARVVGEVLGKFHPHGD AVYDS+VRMAQDFSLR PL+
Sbjct: 121 HRRILFAMHELGLSSKKPFKKCARVVGEVLGKFHPHGDTAVYDSMVRMAQDFSLRSPLVN 180
Query: 181 GHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240
GHGNFGSIDADP AAMRYTECRLE L+EA++LAD+DQDTV+FVPNFD SQKEPSLLPARL
Sbjct: 181 GHGNFGSIDADPPAAMRYTECRLEELAEAVMLADLDQDTVDFVPNFDNSQKEPSLLPARL 240
Query: 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT--LQELLEYMPGPDFPTGG 298
PTLLLNG+SGIAVGMATNIPPHNLGE+VDVL +IHNPEAT LQELLEYMPGPDFPTGG
Sbjct: 241 PTLLLNGSSGIAVGMATNIPPHNLGEVVDVLRVMIHNPEATVSLQELLEYMPGPDFPTGG 300
Query: 299 LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAEL 358
LIMGNLGIL+AYRTGRGR+ VRGKT+VELLDSKSKR +IIKEIPYQTNKS LVEKIA+L
Sbjct: 301 LIMGNLGILEAYRTGRGRVVVRGKTDVELLDSKSKRSAIIIKEIPYQTNKSALVEKIADL 360
Query: 359 VENKTL--------------------------------------------DGISDIRDES 374
VENK+L DGISDIRDES
Sbjct: 361 VENKSLPLTSSTLSPLVSSLHANIESDGLGGGGGSSGMHKIPFSRLSPSLDGISDIRDES 420
Query: 375 DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLD 434
DRSGMR+VIELKRG+DP IV+N+LYRLT+LQS+FSCNMVGIL+G+PKQMGLKE+LQAFLD
Sbjct: 421 DRSGMRVVIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNGKPKQMGLKEILQAFLD 480
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
FRCSVVERRARF+LS+ ++RRHIVEGI+VG DNLD VIRI+REA SNS A+A L++EF +
Sbjct: 481 FRCSVVERRARFQLSKAQQRRHIVEGILVGFDNLDGVIRIIREASSNSIAAAGLQNEFNI 540
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNIL----------- 543
SEKQA+A+LDM+LRRLT+ E FV E+K+L EQI KLEELLSSRKNIL
Sbjct: 541 SEKQAEALLDMSLRRLTLRESDNFVAENKSLSEQISKLEELLSSRKNILEQEVLMAPALK 600
Query: 544 -------QLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKR 596
Q+IEQE I+LKN+F++PR S+LED D GQL+DID+IPN+EMLL +SEKGY+KR
Sbjct: 601 SQLDSSIQVIEQEAIDLKNKFASPRRSILEDTDDGQLEDIDVIPNEEMLLTLSEKGYLKR 660
Query: 597 MKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT 656
MKP+TFNLQ+RGTIGKSVGKL++ND+MSDFIVCRAHD VLYFSD+G VYSARAYKIPEC+
Sbjct: 661 MKPSTFNLQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKIPECS 720
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGI 716
R A+GTPLVQILSLSDGERITSIIPVSEF DQFL+MLTM GYIK+V LN FSSIR++GI
Sbjct: 721 RTASGTPLVQILSLSDGERITSIIPVSEFTDDQFLLMLTMQGYIKRVPLNSFSSIRSSGI 780
Query: 717 IAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDK 776
IAIQLVPGDELKWVRCCTNDD VAMAS NGMVILS C IR+L RNTRG++AMRLK+GD+
Sbjct: 781 IAIQLVPGDELKWVRCCTNDDFVAMASHNGMVILSLCSKIRTLGRNTRGALAMRLKEGDR 840
Query: 777 MASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVG 836
MAS+DIIPAA+ +LE + SN K GPWLLF+SESGHGKRVPLS FR LNRVG
Sbjct: 841 MASVDIIPAAMWNNLETISKLPESNGKSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVG 900
Query: 837 LIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
LIGYKFSAEDRLAAVFVVGF+LAEDGESDEQVVLVSQSGTVNRIKVRDISIQ+R+ARGVI
Sbjct: 901 LIGYKFSAEDRLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVI 960
Query: 897 LMRLELSGKIQSASLISVT--EPETDL 921
LMRL+ +GKIQ+ASLIS T EPE +L
Sbjct: 961 LMRLDHAGKIQTASLISATECEPEEEL 987
>gi|75252690|sp|Q5YLB5.1|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
Flags: Precursor
gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
Length = 935
Score = 1394 bits (3608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/928 (76%), Positives = 798/928 (85%), Gaps = 26/928 (2%)
Query: 6 FTNTSPMALSSTL---RFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSR-TPILA 61
T + PMA S+ + RFS R SS RFLS PPP + P+ A
Sbjct: 12 LTQSKPMAFSTGITPSRFSG-----------LRKTSSELRFLS--SVTPPPRKQLRPVSA 58
Query: 62 SKDEER---NGNGSV------ATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPD 112
+ EE GNGSV N R+V ELH+E T +Y++Y+MSVLLGRALPD
Sbjct: 59 RRKEEEVGDEGNGSVILRDRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPD 118
Query: 113 VRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF 172
VRDGLKPVHRRIL+AMHELGLSS+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQDF
Sbjct: 119 VRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDF 178
Query: 173 SLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKE 232
SLR PLIRGHGNFGSIDADP AAMRYTECRLEAL+E+MLLAD++Q+TV+FVPNFD SQKE
Sbjct: 179 SLRSPLIRGHGNFGSIDADPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKE 238
Query: 233 PSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGP 292
PSLLPAR+P LLLNGASGIAVGMATNIPPHNLGELVD L ALIHNPEATLQELLEYMPGP
Sbjct: 239 PSLLPARVPNLLLNGASGIAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGP 298
Query: 293 DFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLV 352
DFPTGG+IMGN+GIL+A+RTGRGR+ +RGKT++ELLDSK+KR +II+EIPYQTNK+ LV
Sbjct: 299 DFPTGGIIMGNIGILEAFRTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLV 358
Query: 353 EKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNM 412
EKIA+LVENK L+G+SDIRDESDRSGMRIVIELKRG+DP+IV+N+LYRLTALQSSFSCNM
Sbjct: 359 EKIADLVENKILEGVSDIRDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNM 418
Query: 413 VGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVI 472
VGIL+GQPK MGLKE+LQAFLDFRCSVVERRARFKLSQ +ER HIVEGI+VGLDNLD VI
Sbjct: 419 VGILNGQPKLMGLKELLQAFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVI 478
Query: 473 RIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
+R+A SN+ A+A+L+ EF+LSEKQA+AILD++LRRLT LER KFV+E K+L QI KL
Sbjct: 479 NTIRKASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKL 538
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
EELLSS+K ILQLIE+E IE+KN+F PR SMLED DSG L+DID+IPN+EMLLAISEKG
Sbjct: 539 EELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLAISEKG 598
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
YVKRMKP+TFNLQNRGTIGKSVGKLRVNDAMSDF+VCRAHD VLYFSD+G VYS+ AYKI
Sbjct: 599 YVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKI 658
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR 712
PEC+R AAGTPLVQILSLSDGERITSIIPVSEFA DQ+LVMLT+NGYIKKVSLN F+SIR
Sbjct: 659 PECSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIR 718
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
TGIIAIQLVP DELKWV+CC+N+D VAMASQNGMVIL+ C IR+L RNTRGSVAMRLK
Sbjct: 719 CTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLK 778
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
+GDK+ASMDIIP AL K+L++T E + GPWLLFVSESG+GKRVP+S FR PL
Sbjct: 779 EGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPL 838
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
NRVGL GYKFS+ED LAAVFVVGFSL EDGESDEQVVLVSQSGTVNRIKVRDISIQ+RYA
Sbjct: 839 NRVGLFGYKFSSEDCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYA 898
Query: 893 RGVILMRLELSGKIQSASLISVTEPETD 920
RGVILMRLE +GKIQSASLIS + + +
Sbjct: 899 RGVILMRLEHAGKIQSASLISAADADPE 926
>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A [Arabidopsis thaliana]
gi|110808536|sp|Q9CAF6.2|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
chloroplastic/mitochondrial; Flags: Precursor
gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana]
Length = 950
Score = 1366 bits (3535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/893 (76%), Positives = 786/893 (88%), Gaps = 9/893 (1%)
Query: 31 CRHARFLSSPRRFLSFPPSRPPPSSRTPILASK--DE---ERNGNGSVATVGPNVSPRIV 85
CR R S RF S SR P S + + A K DE E +G + V RIV
Sbjct: 46 CRLRRTEPSATRFFS---SRTPRSGKFVVGAGKRGDEQVKEESGANNGGLVVSGDESRIV 102
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHRRILFAMHELG+SS+KP+KKCARV
Sbjct: 103 PFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARV 162
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GHGNFGSIDADP AAMRYTECRL+
Sbjct: 163 VGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDP 222
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
L+EA+LL+D+DQDTV+FV NFD SQKEP++LPARLP LLLNGASGIAVGMATNIPPHNLG
Sbjct: 223 LAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLG 282
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
ELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMGNLG+LDAYRTGRGR+ VRGK EV
Sbjct: 283 ELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKAEV 342
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
ELLD K+KR VII EIPYQTNK+ LV+KIAELVENKTL+GISDIRDESDR+GMR+VIEL
Sbjct: 343 ELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIEL 402
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK MGLKE+LQAF+DFRCSVVERRAR
Sbjct: 403 KRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVVERRAR 462
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
FKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S+A+AAL+ E+ LSEKQA+AIL++
Sbjct: 463 FKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEI 522
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT LERKKF DES +L EQI KLE+LLS+R NIL+LIEQE IELK+RFS+PR SML
Sbjct: 523 TLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSML 582
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
ED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TFNLQ+RGTIGKSVGKLRV+DAMSD
Sbjct: 583 EDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
F+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGTPLVQILS+S+GER+TSI+PVSEF
Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEF 702
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
A D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL GDELKWVRCC++DDLVAMASQN
Sbjct: 703 AEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQN 762
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
GMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDIIPA+L KD+E ED+ S VK S
Sbjct: 763 GMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA-SLVKQS 821
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYKF+ +DRLAAVFVVG+SLAEDGESD
Sbjct: 822 TGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESD 881
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
EQVVLVSQSGTVNRIKVRDISIQ+R ARGVILMRL+ +GKIQSASLIS + E
Sbjct: 882 EQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISAADEE 934
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 41/274 (14%)
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIP-----NDEMLLAISEKGYVKRMKPNTFN-LQNR 607
+N TP + +L ++ ++ I+P D LL ++ G +K++ F+ +++
Sbjct: 674 RNAAGTPLVQILSMSEGERV--TSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRST 731
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G I +L D + C + D V S G+V + + +RN G V
Sbjct: 732 GIIAI---QLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKG---VTA 785
Query: 668 LSLSDGERITS--IIPVS------EFAGDQ---------FLVMLTMNGYIKKVSLNLF-- 708
+ L + ++I S IIP S E + D +L+ + NGY K+V L+ F
Sbjct: 786 MRLKNEDKIASMDIIPASLRKDMEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRR 845
Query: 709 SSIRTTGIIAIQLVPGDELKWVRCC--------TNDDLVAMASQNGMVILSSCDIIRSLS 760
S + G+ + D L V +D+ V + SQ+G V I S
Sbjct: 846 SRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQS 905
Query: 761 RNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
R RG + MRL K+ S +I AA ++ E T
Sbjct: 906 RRARGVILMRLDHAGKIQSASLISAADEEETEGT 939
>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 1362 bits (3524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/904 (75%), Positives = 790/904 (87%), Gaps = 12/904 (1%)
Query: 23 SFFLF---HNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILASK--DE---ERNGNGSVA 74
SFF F CR R S RF S SR P S + + ASK DE E +G +
Sbjct: 35 SFFRFPLTDPLCRLRRTEPSASRFFS---SRTPRSGQFVVGASKRADEQFKEESGANNGG 91
Query: 75 TVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 134
V RIVP ELH+E T SY+ Y++SVLLGRALPDVRDGLKPVHRRILFAMHELG+S
Sbjct: 92 LVVSGDESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMS 151
Query: 135 SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAA 194
S+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GHGNFGSIDADP A
Sbjct: 152 SKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPA 211
Query: 195 AMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVG 254
AMRYTECRL+ L+EA+LL+D+DQDTV+FV NFD SQKEP++LPARLP LLLNGASGIAVG
Sbjct: 212 AMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVG 271
Query: 255 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314
MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMGNLG+LDAYRTGR
Sbjct: 272 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGR 331
Query: 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDES 374
GR+ VRGK EVELLD K+KR VII EIPYQTNK+ LV+KIAELVENKTL+GISDIRDES
Sbjct: 332 GRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDES 391
Query: 375 DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLD 434
DR+GMR+VIELKRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK MGLKE+LQAF+D
Sbjct: 392 DRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFID 451
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
FRCSVVERRARFKLS ++R+H +EGI+VGLDN+D VI++++ A S+S+ASAAL+ E+ L
Sbjct: 452 FRCSVVERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSEYGL 511
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
SEKQA+AIL++ LRRLT LERKK DES +L EQI KLE+LLS+R NIL+LIEQE IELK
Sbjct: 512 SEKQAEAILEITLRRLTTLERKKVTDESSSLTEQITKLEQLLSTRANILKLIEQEAIELK 571
Query: 555 NRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
+RFS+PR SMLED+DSG L+DID+IPN+EML+AISEKGYVK+MK +TFNLQ+RGTIGKSV
Sbjct: 572 DRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSV 631
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
GKLRV+DAMSDF+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGTPLVQILS+S+GE
Sbjct: 632 GKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGE 691
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
R+TSI+PVSEFA D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL GDELKWVRCC+
Sbjct: 692 RVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCS 751
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+DDLVAMASQNG+V+LS+CD +R+LSRNT+G AMRLK+ DK+ASMDIIPA+L KD+E
Sbjct: 752 SDDLVAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEK 811
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
ED+ S VK S+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYKF+ +DRLAAVFVV
Sbjct: 812 SEDA-SIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVV 870
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G+SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ+R ARGVILMRL+ +GKIQSASLIS
Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930
Query: 915 TEPE 918
+ E
Sbjct: 931 ADEE 934
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 41/277 (14%)
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIP-----NDEMLLAISEKGYVKRMKPNTFN-LQNR 607
+N TP + +L ++ ++ I+P D LL ++ G +K++ F+ +++
Sbjct: 674 RNAAGTPLVQILSMSEGERV--TSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRST 731
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G I +L D + C + D V S G+V + + +RN G V
Sbjct: 732 GIIAI---QLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLSRNTKG---VTA 785
Query: 668 LSLSDGERITS--IIPVS------EFAGDQ---------FLVMLTMNGYIKKVSLNLF-- 708
+ L + ++I S IIP S E + D +L+ + NGY K+V L+ F
Sbjct: 786 MRLKNEDKIASMDIIPASLRKDMEEKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRR 845
Query: 709 SSIRTTGIIAIQLVPGDELKWVRCC--------TNDDLVAMASQNGMVILSSCDIIRSLS 760
S + G+ + D L V +D+ V + SQ+G V I S
Sbjct: 846 SRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQS 905
Query: 761 RNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
R RG + MRL K+ S +I AA ++ E TP +
Sbjct: 906 RRARGVILMRLDHAGKIQSASLISAADEEETEGTPTN 942
>gi|413932670|gb|AFW67221.1| hypothetical protein ZEAMMB73_149484 [Zea mays]
Length = 932
Score = 1302 bits (3370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/828 (74%), Positives = 733/828 (88%), Gaps = 4/828 (0%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V RI+PVELH+E T +Y++Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 94 VKERILPVELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 153
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD AVY+SLVRMAQDFS+RYPL++GHGNFGS+DADP AAMRYT
Sbjct: 154 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 213
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
ECRL++L+EAM L D++ +TV+FVPNFD SQKEPSLLP+R+P+LLLNG+SGIAVGMATNI
Sbjct: 214 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPSRVPSLLLNGSSGIAVGMATNI 273
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGELVDVL +I N EATLQELLE MPGPDFPTGG I+GN GIL+AY++GRGRI V
Sbjct: 274 PPHNLGELVDVLSVIIENREATLQELLERMPGPDFPTGGTILGNQGILEAYKSGRGRIVV 333
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
RGKT++E +D KSKR +IIKEIPYQTNK+ LV+KIAELVE+K L+GISDIRDESDR+GM
Sbjct: 334 RGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELVEDKVLEGISDIRDESDRTGM 393
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIELKR ADP++V+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAFLDFRCSV
Sbjct: 394 RVVIELKRSADPAVVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSV 453
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ERRAR+KLSQ ER+HIVEGI++GLDNLD VI+I+RE +++ A+ AL +EF LSEKQA
Sbjct: 454 IERRARYKLSQALERKHIVEGIVIGLDNLDAVIQIIRETSNHTAATRALVNEFDLSEKQA 513
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
+A+LD+ L++LT LERKKFVDE+KT+ E+I KL ELLSS+K I QLI+QE +LK++FST
Sbjct: 514 EALLDITLKKLTSLERKKFVDEAKTMSEEISKLNELLSSKKLIFQLIQQEAADLKSKFST 573
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
PR S+++D+ S ++DDIDIIPN+EMLL +SEKGY KRM P+TF+LQ+RGTIGKSVGK+R+
Sbjct: 574 PRRSVIDDSISSEVDDIDIIPNEEMLLILSEKGYAKRMNPDTFSLQHRGTIGKSVGKMRM 633
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
ND+ SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+L LSDGERITSI
Sbjct: 634 NDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSDGERITSI 693
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IPVSEF +Q+LVMLT+NGYIKKV LN FSSIR+TGII+IQLVPGDELKWVR C NDDLV
Sbjct: 694 IPVSEFGENQYLVMLTVNGYIKKVPLNAFSSIRSTGIISIQLVPGDELKWVRHCGNDDLV 753
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
A+ASQ G VI++SCD +R+L RNTRG AM+LK+GD MA+MDIIPA +HK PE +
Sbjct: 754 ALASQKGRVIVNSCDKLRALGRNTRGVCAMKLKEGDMMAAMDIIPATVHK----MPERCN 809
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
S ++ SS PWLLF++ESG GKRVPL++FR+ N VGL GYK A+ RLAAVFV G SL
Sbjct: 810 SRLRDSSPPWLLFIAESGIGKRVPLNAFRQSNFNAVGLQGYKLPADCRLAAVFVAGLSLT 869
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
EDGESDEQVVLVSQSGTVNRIKV+DISIQ+R +RGVILMRLE +GKIQ
Sbjct: 870 EDGESDEQVVLVSQSGTVNRIKVKDISIQSRRSRGVILMRLEHAGKIQ 917
>gi|413932669|gb|AFW67220.1| hypothetical protein ZEAMMB73_149484 [Zea mays]
Length = 933
Score = 1298 bits (3359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/829 (74%), Positives = 733/829 (88%), Gaps = 5/829 (0%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V RI+PVELH+E T +Y++Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 94 VKERILPVELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 153
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD AVY+SLVRMAQDFS+RYPL++GHGNFGS+DADP AAMRYT
Sbjct: 154 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 213
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
ECRL++L+EAM L D++ +TV+FVPNFD SQKEPSLLP+R+P+LLLNG+SGIAVGMATNI
Sbjct: 214 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPSRVPSLLLNGSSGIAVGMATNI 273
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGELVDVL +I N EATLQELLE MPGPDFPTGG I+GN GIL+AY++GRGRI V
Sbjct: 274 PPHNLGELVDVLSVIIENREATLQELLERMPGPDFPTGGTILGNQGILEAYKSGRGRIVV 333
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
RGKT++E +D KSKR +IIKEIPYQTNK+ LV+KIAELVE+K L+GISDIRDESDR+GM
Sbjct: 334 RGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELVEDKVLEGISDIRDESDRTGM 393
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIELKR ADP++V+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAFLDFRCSV
Sbjct: 394 RVVIELKRSADPAVVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSV 453
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ERRAR+KLSQ ER+HIVEGI++GLDNLD VI+I+RE +++ A+ AL +EF LSEKQA
Sbjct: 454 IERRARYKLSQALERKHIVEGIVIGLDNLDAVIQIIRETSNHTAATRALVNEFDLSEKQA 513
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
+A+LD+ L++LT LERKKFVDE+KT+ E+I KL ELLSS+K I QLI+QE +LK++FST
Sbjct: 514 EALLDITLKKLTSLERKKFVDEAKTMSEEISKLNELLSSKKLIFQLIQQEAADLKSKFST 573
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAI-SEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR S+++D+ S ++DDIDIIPN+EMLL I SEKGY KRM P+TF+LQ+RGTIGKSVGK+R
Sbjct: 574 PRRSVIDDSISSEVDDIDIIPNEEMLLKILSEKGYAKRMNPDTFSLQHRGTIGKSVGKMR 633
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+ND+ SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+L LSDGERITS
Sbjct: 634 MNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSDGERITS 693
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF +Q+LVMLT+NGYIKKV LN FSSIR+TGII+IQLVPGDELKWVR C NDDL
Sbjct: 694 IIPVSEFGENQYLVMLTVNGYIKKVPLNAFSSIRSTGIISIQLVPGDELKWVRHCGNDDL 753
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
VA+ASQ G VI++SCD +R+L RNTRG AM+LK+GD MA+MDIIPA +HK PE
Sbjct: 754 VALASQKGRVIVNSCDKLRALGRNTRGVCAMKLKEGDMMAAMDIIPATVHK----MPERC 809
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+S ++ SS PWLLF++ESG GKRVPL++FR+ N VGL GYK A+ RLAAVFV G SL
Sbjct: 810 NSRLRDSSPPWLLFIAESGIGKRVPLNAFRQSNFNAVGLQGYKLPADCRLAAVFVAGLSL 869
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
EDGESDEQVVLVSQSGTVNRIKV+DISIQ+R +RGVILMRLE +GKIQ
Sbjct: 870 TEDGESDEQVVLVSQSGTVNRIKVKDISIQSRRSRGVILMRLEHAGKIQ 918
>gi|357114941|ref|XP_003559252.1| PREDICTED: probable DNA gyrase subunit A,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 1130
Score = 1295 bits (3351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/880 (71%), Positives = 744/880 (84%), Gaps = 18/880 (2%)
Query: 42 RFLSFPPSRPPPSSRTPILASKDEER--NGNGSVATVGPNVSPRIVPVELHEEMTGSYIT 99
RFL SR P+ A +D+ R +G+G VA V RIVPVELH+E T +Y+
Sbjct: 41 RFLCAASSR----GARPVRARRDDGRSADGDGVVA-----VKERIVPVELHKEATEAYMA 91
Query: 100 YSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDN 159
Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+P++KCARVVGEVLGKFHPHGD+
Sbjct: 92 YAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPYRKCARVVGEVLGKFHPHGDS 151
Query: 160 AVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE---ALSEAMLLADID 216
AVY++LVRMAQDFS+RYPL++GHGNFGSIDADP AAMRYTECRL+ + +
Sbjct: 152 AVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCSFFRPISCQLFS 211
Query: 217 QDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIH 276
V++VPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGMATNIPPHNLGELVD L +I
Sbjct: 212 TGQVDYVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDALSVIIQ 271
Query: 277 NPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMG 336
NPEATLQELLE MPGPDFPTGG+IMGN GILDAYRTGRGR+ VRGKT++E +D KSKR
Sbjct: 272 NPEATLQELLECMPGPDFPTGGIIMGNDGILDAYRTGRGRVIVRGKTDMETIDEKSKRTA 331
Query: 337 VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVN 396
+IIKEIPYQTNK+ LV++IAEL E+K L+GISDIRDESDRSGMR+VIE+KRGA+P IV+N
Sbjct: 332 IIIKEIPYQTNKATLVQRIAELAEDKVLEGISDIRDESDRSGMRVVIEVKRGANPEIVLN 391
Query: 397 SLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRH 456
+LYR TALQSSFSCNMV ILDG PK MGLKE+LQAFLDFRCSV+ERRA+FKLSQ ER+H
Sbjct: 392 NLYRHTALQSSFSCNMVAILDGHPKLMGLKEILQAFLDFRCSVIERRAKFKLSQALERKH 451
Query: 457 IVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERK 516
IVEGI++GLDNLD VI+++RE ++S A AL +E+ LSEKQA+A+LD+ LR+LT LERK
Sbjct: 452 IVEGIVIGLDNLDSVIQMIRETSNHSKAKEALANEYGLSEKQAEALLDITLRKLTSLERK 511
Query: 517 KFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI 576
KF+DES +L E I KL ELLSS+K + QLIEQE +LKN+F+TPR S LED+ +G++DD+
Sbjct: 512 KFIDESNSLSEDISKLNELLSSKKLMFQLIEQEAADLKNKFATPRRSFLEDSANGEVDDM 571
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVL 636
D+IPN+EMLL +SEKGY+KRMKPNTFNLQ+RGTIGKSVGK+R ND+ SDFIVC+ HDHVL
Sbjct: 572 DVIPNEEMLLIVSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRTNDSTSDFIVCQTHDHVL 631
Query: 637 YFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTM 696
YFSD+GIVYSARAYKIPECTRNAAGTPLVQ+LSLSDGERITSIIPVSEF DQ+LVMLT+
Sbjct: 632 YFSDKGIVYSARAYKIPECTRNAAGTPLVQLLSLSDGERITSIIPVSEFGEDQYLVMLTV 691
Query: 697 NGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDII 756
NGYIKKV LN+FSSIR TGII+IQLVPGDELKWVR C +DDLVA+ASQ GMVI+++C+ +
Sbjct: 692 NGYIKKVPLNVFSSIRPTGIISIQLVPGDELKWVRLCGDDDLVALASQTGMVIVNTCNKL 751
Query: 757 RSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSES 816
R+L R TRG VAM+LK+ DKMASMDIIPA +HK PE S VK S PWLLF++E+
Sbjct: 752 RALGRKTRGVVAMKLKEDDKMASMDIIPATMHK----MPEKYDSRVKDLSPPWLLFIAEN 807
Query: 817 GHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGT 876
G GKRVPL++FR+ NR GL GYK + RLAAVFVVG SLA+DG SDEQVVL+S GT
Sbjct: 808 GLGKRVPLNAFRQSSFNRRGLHGYKLPEDCRLAAVFVVGVSLADDGGSDEQVVLISHGGT 867
Query: 877 VNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
VNRIKV+DISIQ R A+GVILMRLE +GKIQSASL+S E
Sbjct: 868 VNRIKVKDISIQGRGAKGVILMRLEHAGKIQSASLMSAAE 907
>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
Length = 899
Score = 1285 bits (3326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/870 (74%), Positives = 749/870 (86%), Gaps = 23/870 (2%)
Query: 31 CRHARFLSSPRRFLSFPPSRPPPSSRTPILASK-------DEERNGNGSVATVGPNVSPR 83
CR R S RF S SR P S + + A K +E NG + G R
Sbjct: 28 CRLRRTEPSATRFFS---SRTPRSGKFVVGAGKRGDEQVKEESGANNGGLVVSGDE--SR 82
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHRRILFAMHELG+SS+KP+KKCA
Sbjct: 83 IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCA 142
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GHGNFGSIDADP AAMRYTECRL
Sbjct: 143 RVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRL 202
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+EA+LL+D+DQDTV+FV NFD SQKEP++LPARLP LLLNGASGIAVGMATNIPPHN
Sbjct: 203 DPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHN 262
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMGNLG+LDAYRTGRGR+ VRGK
Sbjct: 263 LGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKA 322
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
EVELLD K+KR VII EIPYQTNK+ LV+KIAELVENKTL+GISDIRDESDR+GMR+VI
Sbjct: 323 EVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVI 382
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK MGLKE+LQAF+DFRCSVVERR
Sbjct: 383 ELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVVERR 442
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
ARFKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S+A+AAL+ E+ LSEKQA+AIL
Sbjct: 443 ARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAIL 502
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
++ LRRLT LERKKF DES +L EQI KLE+LLS+R NIL+LIEQE IELK+RFS+PR S
Sbjct: 503 EITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRS 562
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
MLED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TFNLQ+RGTIGKSVGKLRV+DAM
Sbjct: 563 MLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAM 622
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
SDF+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGTPLVQILS+S+GER+TSI+PVS
Sbjct: 623 SDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVS 682
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EFA D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL GDELKWVRCC++DDLVAMAS
Sbjct: 683 EFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMAS 742
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
QNGMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDIIPA+L KD+E ED+ S VK
Sbjct: 743 QNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA-SLVK 801
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYK + + F+V F
Sbjct: 802 QSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSG---FSPFLVVF------- 851
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
SDEQVVLVSQSGTVNRIKVRDISIQ+R AR
Sbjct: 852 SDEQVVLVSQSGTVNRIKVRDISIQSRRAR 881
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ L+ ++ GY+K++ + F+ T G +L D + C D V S
Sbjct: 581 EEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDR 640
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMR---LKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G+V + I SRN G+ ++ + +G+++ S I+P + ED
Sbjct: 641 GIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS--IVPVS------EFAEDR---- 688
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+LL ++ +G K+V L F + G+I + ++ D L V
Sbjct: 689 ------YLLMLTVNGCIKKVSLKLFSGI--RSTGIIAIQLNSGDELKWVRCCS------- 733
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
SD+ V + SQ+G V + +R +GV MRL+ KI S +I
Sbjct: 734 -SDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDII 782
>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
Length = 917
Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/870 (74%), Positives = 749/870 (86%), Gaps = 23/870 (2%)
Query: 31 CRHARFLSSPRRFLSFPPSRPPPSSRTPILASK-------DEERNGNGSVATVGPNVSPR 83
CR R S RF S SR P S + + A K +E NG + G R
Sbjct: 46 CRLRRTEPSATRFFS---SRTPRSGKFVVGAGKRGDEQVKEESGANNGGLVVSGDE--SR 100
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHRRILFAMHELG+SS+KP+KKCA
Sbjct: 101 IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCA 160
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GHGNFGSIDADP AAMRYTECRL
Sbjct: 161 RVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRL 220
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+EA+LL+D+DQDTV+FV NFD SQKEP++LPARLP LLLNGASGIAVGMATNIPPHN
Sbjct: 221 DPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHN 280
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMGNLG+LDAYRTGRGR+ VRGK
Sbjct: 281 LGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKA 340
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
EVELLD K+KR VII EIPYQTNK+ LV+KIAELVENKTL+GISDIRDESDR+GMR+VI
Sbjct: 341 EVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVI 400
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK MGLKE+LQAF+DFRCSVVERR
Sbjct: 401 ELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVVERR 460
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
ARFKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S+A+AAL+ E+ LSEKQA+AIL
Sbjct: 461 ARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAIL 520
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
++ LRRLT LERKKF DES +L EQI KLE+LLS+R NIL+LIEQE IELK+RFS+PR S
Sbjct: 521 EITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRS 580
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
MLED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TFNLQ+RGTIGKSVGKLRV+DAM
Sbjct: 581 MLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAM 640
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
SDF+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGTPLVQILS+S+GER+TSI+PVS
Sbjct: 641 SDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVS 700
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EFA D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL GDELKWVRCC++DDLVAMAS
Sbjct: 701 EFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMAS 760
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
QNGMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDIIPA+L KD+E ED+ S VK
Sbjct: 761 QNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA-SLVK 819
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYK + + F+V F
Sbjct: 820 QSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSG---FSPFLVVF------- 869
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
SDEQVVLVSQSGTVNRIKVRDISIQ+R AR
Sbjct: 870 SDEQVVLVSQSGTVNRIKVRDISIQSRRAR 899
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ L+ ++ GY+K++ + F+ T G +L D + C D V S
Sbjct: 599 EEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDR 658
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMR---LKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G+V + I SRN G+ ++ + +G+++ S I+P + ED
Sbjct: 659 GIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTS--IVPVS------EFAEDR---- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+LL ++ +G K+V L F + G+I + ++ D L V
Sbjct: 707 ------YLLMLTVNGCIKKVSLKLFSGI--RSTGIIAIQLNSGDELKWVRCCS------- 751
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
SD+ V + SQ+G V + +R +GV MRL+ KI S +I
Sbjct: 752 -SDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDII 800
>gi|110808537|sp|Q7XZF7.2|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
chloroplastic/mitochondrial; Flags: Precursor
Length = 939
Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/838 (73%), Positives = 729/838 (86%), Gaps = 11/838 (1%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V R+VPVELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 78 VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD+AVY++LVRMAQDFS+RYPL++GHGNFGSIDADP AAMRYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197
Query: 200 ECRLEALSEAMLLADIDQ----DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
ECRL+ DID V+FVPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGM
Sbjct: 198 ECRLDV--GCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGM 255
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNLGELVDVL +I NPEATLQELLE MPGPDFPTGG I+GN GIL+AY+TGRG
Sbjct: 256 ATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRG 315
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
R+ +RGKT++E +D KSKR +IIKE+PYQTNKS LVE+IAELVE K L+GISDIRDESD
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
RSGMR+VIELKRGADP+IV+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAF+DF
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDF 435
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
RCSV+ERRARFKLSQ ER+HIVEGI++GLDNLD VI+I+R +++ A +L EF LS
Sbjct: 436 RCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLS 495
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
+KQA+A+LD+ LR+LT LERKKFVDE+K+L E+I KL ELLS++K I QLI QE +LKN
Sbjct: 496 DKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKN 555
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+F+TPR S +ED+ S ++DD+DIIPN+EMLL +SEKGYVKRMKPNTFNLQNRGTIGKSVG
Sbjct: 556 KFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVG 615
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
K+R+ND SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+LSLSDGER
Sbjct: 616 KMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGER 675
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
ITSI+PV+EF DQ+LVMLT+NGYIKKV LN FS+IRT+GII+IQL PGDELKWVR C +
Sbjct: 676 ITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGD 735
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DDLVA+ASQNGMVI+++C+ +R+L R TRG +AM+LK+GDKMASMDIIPA H P
Sbjct: 736 DDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHN----MP 791
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
E ++S V+ S PWLLF++++G GKRVPL++FR+ NRVGL GYK + LAAVFVVG
Sbjct: 792 E-TYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVG 850
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
FSL +DGESDEQVVLVSQSGTVNRIKV+DISI++R ARGVILMRLE +GKIQSASLIS
Sbjct: 851 FSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLIS 908
>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
Length = 931
Score = 1283 bits (3319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/838 (73%), Positives = 729/838 (86%), Gaps = 11/838 (1%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V R+VPVELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 78 VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD+AVY++LVRMAQDFS+RYPL++GHGNFGSIDADP AAMRYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197
Query: 200 ECRLEALSEAMLLADIDQ----DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
ECRL+ DID V+FVPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGM
Sbjct: 198 ECRLDV--GCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGM 255
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNLGELVDVL +I NPEATLQELLE MPGPDFPTGG I+GN GIL+AY+TGRG
Sbjct: 256 ATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRG 315
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
R+ +RGKT++E +D KSKR +IIKE+PYQTNKS LVE+IAELVE K L+GISDIRDESD
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
RSGMR+VIELKRGADP+IV+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAF+DF
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDF 435
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
RCSV+ERRARFKLSQ ER+HIVEGI++GLDNLD VI+I+R +++ A +L EF LS
Sbjct: 436 RCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLS 495
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
+KQA+A+LD+ LR+LT LERKKFVDE+K+L E+I KL ELLS++K I QLI QE +LKN
Sbjct: 496 DKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKN 555
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+F+TPR S +ED+ S ++DD+DIIPN+EMLL +SEKGYVKRMKPNTFNLQNRGTIGKSVG
Sbjct: 556 KFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVG 615
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
K+R+ND SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+LSLSDGER
Sbjct: 616 KMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGER 675
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
ITSI+PV+EF DQ+LVMLT+NGYIKKV LN FS+IRT+GII+IQL PGDELKWVR C +
Sbjct: 676 ITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGD 735
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DDLVA+ASQNGMVI+++C+ +R+L R TRG +AM+LK+GDKMASMDIIPA H P
Sbjct: 736 DDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHN----MP 791
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
E ++S V+ S PWLLF++++G GKRVPL++FR+ NRVGL GYK + LAAVFVVG
Sbjct: 792 E-TYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVG 850
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
FSL +DGESDEQVVLVSQSGTVNRIKV+DISI++R ARGVILMRLE +GKIQSASLIS
Sbjct: 851 FSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLIS 908
>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
Length = 823
Score = 1267 bits (3279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/716 (86%), Positives = 668/716 (93%)
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
AL+EAMLLAD++QDTV+F+PNFD SQKEPSLLPARLPTLLLNG+SGIAVGMATNIPPHN+
Sbjct: 99 ALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNI 158
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GELVDVLC LI NPEATLQELLEYMPGPDFPTGGLIMGN+GIL+AYRTGRGRI VRGKTE
Sbjct: 159 GELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIVRGKTE 218
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VELLDSK+KR VIIKEIPYQTNKS LVEKIAELVENK+LDGISDIRDESDRSGMRIVIE
Sbjct: 219 VELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIE 278
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG+DPSIV+N LYRLTALQSSFSCNM+GILDGQPK MGLKE+LQAFLDFRCSVVERRA
Sbjct: 279 LKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERRA 338
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
RFKLSQ +ERRHIVEGI+VGLDNLD VIR+++EAPSN+ AS L++EF LSE+QA+AILD
Sbjct: 339 RFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILD 398
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
++LRR+T LER+KFV ESK+LMEQI KL+ELLSSRK ILQLIEQE IELKNRFSTPR SM
Sbjct: 399 ISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSM 458
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
LED DSGQL+D+D+IPN+EMLLA+SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS
Sbjct: 459 LEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 518
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
DFIVC AHD+VLYFSDRGIV+SARAYKIPECTR AAGTPLVQIL LSDGERITSIIPVSE
Sbjct: 519 DFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSE 578
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
FA DQFL+MLTMNGYIKKVSLN FSSIR+TGIIAIQLVPGDELKWVRCCTNDDLVAMASQ
Sbjct: 579 FAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 638
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
NGMVILSSC+IIR+L RNTRGS+AMRLK GDKMASMDIIPAA+ KDLE+ ED S +
Sbjct: 639 NGMVILSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALEDRQSRARN 698
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
+GPWLLFVSESG GKRVPLS FR PLNRVGLIGYKFSAED LAAVFVVGFSL EDGES
Sbjct: 699 LNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDGES 758
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
DEQVVLVSQSGT+NRIKV DISIQ+R+ARGVILMRLE +GKIQSASL+S TE ETD
Sbjct: 759 DEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETETD 814
>gi|449517553|ref|XP_004165810.1| PREDICTED: LOW QUALITY PROTEIN: DNA gyrase subunit A,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 799
Score = 1259 bits (3257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/801 (79%), Positives = 692/801 (86%), Gaps = 20/801 (2%)
Query: 12 MALSSTLRFSSSFFLFH--------NHCRHARFLSSPRRFLSFPPSRPPPSSR------- 56
MA SS LR S + L H N S RFLS S S R
Sbjct: 1 MASSSGLRIS--YLLRHQLAPPLVSNRFTRTCLGLSELRFLSTKNSTASRSLRLAKSGRR 58
Query: 57 -TPILASKDEERNGNGSVATV--GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDV 113
P+ D+ ++GNGSVA G RIV LH+E T +Y+ Y+MSVLLGRALPDV
Sbjct: 59 DEPVKDEGDDGQDGNGSVAVKKDGGGSDGRIVHTALHKEATDAYMAYAMSVLLGRALPDV 118
Query: 114 RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS 173
RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS
Sbjct: 119 RDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFS 178
Query: 174 LRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEP 233
LR PLI+GH NFGSIDADP AAMRYTECRLEALSEAMLL+D++ +TV+FVPNFD SQKEP
Sbjct: 179 LRSPLIQGHXNFGSIDADPPAAMRYTECRLEALSEAMLLSDLEMNTVDFVPNFDNSQKEP 238
Query: 234 SLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPD 293
SLLPARLPTLLLNG+SGIAVGMATNIPPHNLGE+VD LC LIHNPEATLQELLEYMPGPD
Sbjct: 239 SLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEVVDALCVLIHNPEATLQELLEYMPGPD 298
Query: 294 FPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVE 353
FPTGGLIMGN GIL+AYRTGRGRITVRGKTEVELLDSK+KR VIIKEIPYQTNKS LVE
Sbjct: 299 FPTGGLIMGNNGILEAYRTGRGRITVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSALVE 358
Query: 354 KIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMV 413
+IAELVENKTLDGISDIRDESDR+GMRIVIELKRGADPSIV N+LYRLT+LQSSFSCNMV
Sbjct: 359 RIAELVENKTLDGISDIRDESDRTGMRIVIELKRGADPSIVQNNLYRLTSLQSSFSCNMV 418
Query: 414 GILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIR 473
GI++GQPK MGLKE+LQAFLDFRCSVVERRARFKL +ERRHIVEGI++GLDNLD VIR
Sbjct: 419 GIINGQPKLMGLKELLQAFLDFRCSVVERRARFKLLHAQERRHIVEGIVIGLDNLDGVIR 478
Query: 474 IVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLE 533
++REA S+S ASA+L+ +F LSEKQA+A+LD+NLRRLT LERKKF+DESK+LME I KLE
Sbjct: 479 LIREASSHSIASASLRTQFNLSEKQAEAVLDINLRRLTHLERKKFIDESKSLMENISKLE 538
Query: 534 ELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGY 593
ELLSSR NILQLIEQE ELK++F PR S+LED DSGQ++DID+IPN+EMLLA SEKGY
Sbjct: 539 ELLSSRNNILQLIEQEATELKDKFPNPRRSVLEDTDSGQVEDIDVIPNEEMLLAFSEKGY 598
Query: 594 VKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIP 653
VKRMKPNTFNLQ+RGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD+GIVYSARAYKIP
Sbjct: 599 VKRMKPNTFNLQHRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDKGIVYSARAYKIP 658
Query: 654 ECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT 713
EC R AAGTPLVQ+LSLSDGERITSIIPVSEF GDQFL+MLT GYIKKVSLN FSSIR+
Sbjct: 659 ECGRTAAGTPLVQVLSLSDGERITSIIPVSEFEGDQFLLMLTAYGYIKKVSLNFFSSIRS 718
Query: 714 TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD 773
TGIIAIQLV GDELKWVR CTND+LVAMASQNGMVILSSCD IR+L RNTRGSVAM+LK
Sbjct: 719 TGIIAIQLVSGDELKWVRRCTNDNLVAMASQNGMVILSSCDTIRALGRNTRGSVAMKLKT 778
Query: 774 GDKMASMDIIPAALHKDLERT 794
GDKMASMDIIPAA+ DLER
Sbjct: 779 GDKMASMDIIPAAVWNDLERN 799
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 33/230 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ L+ + GY+K++ N F+ T G +L D + C D V S
Sbjct: 587 EEMLLAFSEKGYVKRMKPNTFNLQHRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDK 646
Query: 746 GMVILSSCDIIRSLSRNTRGS---VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G+V + I R G+ + L DG+++ S IIP S
Sbjct: 647 GIVYSARAYKIPECGRTAAGTPLVQVLSLSDGERITS--IIPV--------------SEF 690
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+G +LL ++ G+ K+V L+ F + G+I + + D L V
Sbjct: 691 EGDQ--FLLMLTAYGYIKKVSLNFFSSI--RSTGIIAIQLVSGDELKWV--------RRC 738
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+D V + SQ+G V I R RG + M+L+ K+ S +I
Sbjct: 739 TNDNLVAMASQNGMVILSSCDTIRALGRNTRGSVAMKLKTGDKMASMDII 788
>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
Length = 872
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/848 (71%), Positives = 715/848 (84%), Gaps = 39/848 (4%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
+ Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF+KCARVVGEVLGKFHPHG
Sbjct: 1 MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60
Query: 158 DNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQ 217
D+AVY++LVRMAQDFS+RYPL++GHGNFGSIDADP AAMRYTECRL+ DID
Sbjct: 61 DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDV--GCFFFLDIDA 118
Query: 218 ----DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCA 273
V+FVPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGMATNIPPHNLGELVDVL
Sbjct: 119 IFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSV 178
Query: 274 LIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK 333
+I NPEATLQELLE MPGPDFPTGG I+GN GIL+AY+TGRGR+ +RGKT++E +D KSK
Sbjct: 179 MIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVMRGKTDIETIDVKSK 238
Query: 334 RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSI 393
R +IIKE+PYQTNKS LVE+IAELVE K L+GISDIRDESDRSGMR+VIELKRGADP+I
Sbjct: 239 RSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAI 298
Query: 394 VVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKE 453
V+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAF+DFRCSV+ERRARFKLSQ E
Sbjct: 299 VLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSVIERRARFKLSQALE 358
Query: 454 RRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTML 513
R+HIVEGI++GLDNLD VI+I+R +++ A +L EF LS+KQA+A+LD+ LR+LT L
Sbjct: 359 RKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLSDKQAEALLDITLRKLTSL 418
Query: 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQ----------------------------L 545
ERKKFVDE+K+L E+I KL ELLS++K I Q L
Sbjct: 419 ERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDGLDYLRAEINVVIRELKLMWSLFKL 478
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
I QE +LKN+F+TPR S +ED+ S ++DD+DIIPN+EMLL +SEKGYVKRMKPNTFNLQ
Sbjct: 479 ILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQ 538
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
NRGTIGKSVGK+R+ND SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLV
Sbjct: 539 NRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLV 598
Query: 666 QILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGD 725
Q+LSLSDGERITSI+PV+EF DQ+LVMLT+NGYIKKV LN FS+IRT+GII+IQL PGD
Sbjct: 599 QLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGD 658
Query: 726 ELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785
ELKWVR C +DDLVA+ASQNGMVI+++C+ +R+L R TRG +AM+LK+GDKMASMDIIPA
Sbjct: 659 ELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPA 718
Query: 786 ALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE 845
H PE ++S V+ S PWLLF++++G GKRVPL++FR+ NRVGL GYK +
Sbjct: 719 TSHN----MPE-TYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPD 773
Query: 846 DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGK 905
LAAVFVVGFSL +DGESDEQVVLVSQSGTVNRIKV+DISI++R ARGVILMRLE +GK
Sbjct: 774 CSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGK 833
Query: 906 IQSASLIS 913
IQSASLIS
Sbjct: 834 IQSASLIS 841
>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
Length = 845
Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/715 (75%), Positives = 638/715 (89%), Gaps = 1/715 (0%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V RI+PVELH+E T +Y++Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 92 VKERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 151
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD AVY+SLVRMAQDFS+RYPL++GHGNFGS+DADP AAMRYT
Sbjct: 152 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 211
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
ECRL++L+EAM L D++ +TV+FVPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGMATNI
Sbjct: 212 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 271
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGELVDVL +I NPEATLQELLE MPGPDFPTGG I+GN GIL+AY++GRGRI V
Sbjct: 272 PPHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTILGNQGILEAYKSGRGRIVV 331
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
RGKT++E +D KSKR +IIKEIPYQTNK+ LV+KIAEL E+K L+GISDIRDESDR+GM
Sbjct: 332 RGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTGM 391
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIELKR ADP+IV+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAFLDFRCSV
Sbjct: 392 RVVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSV 451
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ERRAR+KLSQ ER+HIVEGI++GLDNLD VI+++RE +++ A+ AL EF LSEKQA
Sbjct: 452 IERRARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKEFDLSEKQA 511
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
+A+LD+ L+RLT LERKKFVDE+K L E+I KL ELLSS++ I QLI+QE +LKN+FST
Sbjct: 512 EALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLSSKELIFQLIQQEAADLKNKFST 571
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAI-SEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR S+++D+ S ++DDIDIIPN+EMLL I SEKGY KRM PNTF+LQ+RGTIGKSVGK+R
Sbjct: 572 PRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGYAKRMNPNTFSLQHRGTIGKSVGKMR 631
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+ND+ SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+L LSDGERITS
Sbjct: 632 LNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSDGERITS 691
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF DQ LVMLT+NGYIKKV LN FSSIR+TGII+IQLVPGDELKWVR C NDDL
Sbjct: 692 IIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRSTGIISIQLVPGDELKWVRRCGNDDL 751
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
VA+ASQ G VI++SCD +R+L RNTRG AM+LK+GDKMA+MDIIPA HK E+
Sbjct: 752 VALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEGDKMAAMDIIPATAHKMPEK 806
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTND 736
IIP E L +L+ GY K+++ N FS T G ++ D C
Sbjct: 590 IIPNEEM----LLKILSEKGYAKRMNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTH 645
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRL---KDGDKMASMDIIPAALHKDLER 793
D V S G+V + I +R G+ ++L DG+++ S IIP +
Sbjct: 646 DHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSDGERITS--IIPVS------E 697
Query: 794 TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFV 853
ED L+ ++ +G+ K+VPL++F + G+I + D L V
Sbjct: 698 FGEDQ----------CLVMLTVNGYIKKVPLNAFSSI--RSTGIISIQLVPGDELKWVRR 745
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
G +D+ V L SQ G V + R RGV M+L+ K+ + +I
Sbjct: 746 CG--------NDDLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEGDKMAAMDIIP 797
Query: 914 VT 915
T
Sbjct: 798 AT 799
>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 813
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/811 (61%), Positives = 626/811 (77%), Gaps = 26/811 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP+ELH+E SYI Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGLSS+KPFKKC
Sbjct: 29 RIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLSSKKPFKKC 88
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGKFHPHGD AVYD+LVRMAQDFSLR PL+ GHGNFGS+D DPAAAMRYTECR
Sbjct: 89 ARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAAAMRYTECR 148
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ LSEAMLLAD++ DTV+F+P FD SQ EP++LPARLP +LLNGASGIAVGMATNIPPH
Sbjct: 149 LQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVGMATNIPPH 208
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+VD L AL+HNP AT++EL+E++PGPDFPTGG I+G GILDAYR G GR+TVRGK
Sbjct: 209 NLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGHGRLTVRGK 268
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E LD +S R VII E+PYQ NK+ LVEKIA+LV NKTL+G+SDIRDESDR GMRIV
Sbjct: 269 ASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDESDRFGMRIV 328
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+KRGA P +V+N+LY+ T LQ+ FSCNMVGI+ G+PK MGLK+ L+ F++FRCSV+ER
Sbjct: 329 IEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVEFRCSVIER 388
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
RA+F+L + ++R HIVEGI++GL NLD V++I+R A + AS L+ F ++ QADA+
Sbjct: 389 RAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQKGFNVTPAQADAL 448
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L M LRRLT LE K +E L +I L++LL S+ +LQ+IE+E + LK + TPR
Sbjct: 449 LAMPLRRLTSLESGKLKEEHDALTAEITDLKQLLESKHRVLQIIEKEALVLKKEYGTPRR 508
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++E G+++DID+I N+E ++ +SEKGY+KRM TF QNRGT GKS GK+R NDA
Sbjct: 509 TLVEQGRDGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDA 568
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
MSDF VCR HD+VL+FS+RGIVYS RAY+IPEC+R +AG PLVQ++ + GERITS+ V
Sbjct: 569 MSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSV 628
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
S+FA DQ+LVMLT GYIK+ +L+ F+SIR+TGI+AIQL PGDELKWVR +D VA+A
Sbjct: 629 SDFAEDQYLVMLTTGGYIKRTALSSFASIRSTGIVAIQLTPGDELKWVRNAAEEDTVALA 688
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
SQ GMV+ CD + L R TRG AMRL+ DK+ +MDI+PA+L + +
Sbjct: 689 SQRGMVVCIGCDDDKVLGRATRGVRAMRLRGDDKLTAMDIVPASLVR----------TGT 738
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K + PWLL V+E G GKRVP+ +F K RVG+IG K DG
Sbjct: 739 KKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKVKT----------------DG 782
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
ES+EQVV+ S G +NR++VRD+SIQ+R A+
Sbjct: 783 ESEEQVVVGSNKGILNRLRVRDVSIQSRTAK 813
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 661 GTPLVQILSLS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TTGII 717
GTP ++ DGE I + A ++ +V L+ GYIK+++ F++ TTG
Sbjct: 504 GTPRRTLVEQGRDGE----INDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKS 559
Query: 718 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD---G 774
++ D + C D V S+ G+V I SR + G+ +++ G
Sbjct: 560 GGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPG 619
Query: 775 DKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR 834
+++ S+ + + ED +L+ ++ G+ KR LSSF +
Sbjct: 620 ERITSV--------QSVSDFAEDQ----------YLVMLTTGGYIKRTALSSF--ASIRS 659
Query: 835 VGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG 894
G++ + + D L V + ++ V L SQ G V I D + R RG
Sbjct: 660 TGIVAIQLTPGDELKWV--------RNAAEEDTVALASQRGMVVCIGCDDDKVLGRATRG 711
Query: 895 VILMRLELSGKIQSASLI 912
V MRL K+ + ++
Sbjct: 712 VRAMRLRGDDKLTAMDIV 729
>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
Length = 880
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/863 (57%), Positives = 666/863 (77%), Gaps = 21/863 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R + VELH+E + SY++Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+S+KP +KC
Sbjct: 21 RTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKC 80
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQ-----------DFSLRYPLIRGHGNFGSIDAD 191
ARVVGEVLGKFHPHGD AVYD+LVR+AQ FSLR PLI GHGNFGS+D D
Sbjct: 81 ARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLDGD 140
Query: 192 PAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGI 251
PAAAMRYTECRL LSEAMLLAD+D DTV+F+PNFD SQKEP ++PARLP +L+NGASGI
Sbjct: 141 PAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGI 200
Query: 252 AVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYR 311
AVGMATNIPPHNL E+VD LCALI NP AT++EL+E++PGPDFPTGG I+G GI DA+R
Sbjct: 201 AVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFR 260
Query: 312 TGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
TGRG ITVRGK + E L+ K R +II EIPY TNKS LV KIAELV +KTL+G+SDIR
Sbjct: 261 TGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVSDIR 320
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
DESDR+GMRIV+ELKRGA ++V+N+LY+ TALQS FS N+VGIL+ +P+ +K +L+
Sbjct: 321 DESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEI 380
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
FLDFRCSVV+RRA+ +L++ + R H++EG + GLD LD V+++++ A +++A AL+ +
Sbjct: 381 FLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQKD 440
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
F+LS QA+A+L M LRR+T LER K ++E +L+ Q L ELLS+++ +L+++E+E +
Sbjct: 441 FELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASNLRELLSNKQRVLRVVEKEAL 500
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
LKN F +PR ++LE+ G++D+ID+IPN+E L +SEKGY+KRM+P+TF Q RGT G
Sbjct: 501 ALKNEFGSPRRTVLEEDGDGRIDNIDVIPNNESFLTLSEKGYIKRMQPDTFLAQRRGTTG 560
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
KS K++ ND M D +CR HDHVL FS+RG+VYS RAY++PEC+R +AG P++Q+LS+
Sbjct: 561 KSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTSAGVPIIQVLSIP 620
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
GERITSI P+SEF D FLVMLT GYIK+ L FSSIR GI+AIQL+ GDELKWVR
Sbjct: 621 AGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQLMEGDELKWVR 680
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
T D + + S+NGM + + C+ RS+ R RG AMR+K+GD++A++DI+P ++ K+
Sbjct: 681 LATQSDRIFIGSRNGMAMQAPCE-FRSMRRGARGLRAMRIKEGDEIAAIDIVPGSVWKE- 738
Query: 792 ERTPEDSHSNV-----KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED 846
+P ++V K S PWLLFVSE+G KRVP++SF + LN+VG+IG KF D
Sbjct: 739 --SPTLLCTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
RLA++FVVG S++ DGES+E++V+ +Q G NR KVR+ISI++R RG+ LM+L++ K+
Sbjct: 797 RLASMFVVGTSVS-DGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKV 855
Query: 907 QSASLISVTEPETDLFLPSTSDK 929
+S S+++ ++ PS S +
Sbjct: 856 KSVSVVAASDSPAHDEPPSDSSQ 878
>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
Length = 880
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/863 (57%), Positives = 663/863 (76%), Gaps = 21/863 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R + VELH+E + SY++Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+S+KP +KC
Sbjct: 21 RTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKC 80
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQ-----------DFSLRYPLIRGHGNFGSIDAD 191
ARVVGEVLGKFHPHGD AVYD+LVR+AQ FSLR PLI GHGNFGS+D D
Sbjct: 81 ARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLDGD 140
Query: 192 PAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGI 251
PAAAMRYTECRL LSEAMLLAD+D DTV+F+PNFD SQKEP ++PARLP +L+NGASGI
Sbjct: 141 PAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGI 200
Query: 252 AVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYR 311
AVGMATNIPPHNL E+VD LCALI NP AT++EL+E++PGPDFPTGG I+G GI DA+R
Sbjct: 201 AVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFR 260
Query: 312 TGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
TGRG ITVRGK + E L+ K R ++I EIPY TNKS LV KIAELV +K L+G+SDIR
Sbjct: 261 TGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVSDIR 320
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
DESDR+GMRIV+ELKRGA ++V+N+LY+ TALQS FS N+VGIL+ +P+ +K +L+
Sbjct: 321 DESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEI 380
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
FLDFRCSVV+RRA+ +L++ + R H++EG + GLD LD V+++++ A +++A AL+ +
Sbjct: 381 FLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQKD 440
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
F LS QA+A+L M LRR+T LER K ++E +L+ Q L ELLS+++ +L+++E+E +
Sbjct: 441 FGLSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASDLRELLSNKQRVLKVVEKEAL 500
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
LKN F +PR ++LE+ G++D+ID+IPN+E L +SEKGY+KRM+P+TF Q RGT G
Sbjct: 501 ALKNEFGSPRRTVLEEYGDGRIDNIDVIPNNESFLTLSEKGYIKRMQPDTFLAQRRGTTG 560
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
KS K++ ND M D +CR HDHVL FS+RG+VYS RAY++PEC+R + G P++Q+LS+
Sbjct: 561 KSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTSTGVPIIQVLSIP 620
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
GERITSI P+SEF D FLVMLT GYIK+ L FSSIR GI+AIQL+ GDELKWVR
Sbjct: 621 AGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQLMEGDELKWVR 680
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
T D + + S+NGM + + C+ RS+ R RG AMR+K+GD++A++DI+P ++ K+
Sbjct: 681 LATQSDRIFIGSRNGMAMQAPCE-FRSMRRGARGLRAMRIKEGDEIAAIDIVPGSVWKE- 738
Query: 792 ERTPEDSHSNV-----KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED 846
+P ++V K S PWLLFVSE+G KRVP++SF + LN+VG+IG KF D
Sbjct: 739 --SPTLLCTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
RLA++FVVG S++ DGES+E++V+ +Q G NR KVR+ISI++R RG+ LM+L++ K+
Sbjct: 797 RLASMFVVGTSVS-DGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKV 855
Query: 907 QSASLISVTEPETDLFLPSTSDK 929
+S S+++ ++ PS S +
Sbjct: 856 KSVSVVAASDSPAHDEPPSDSSQ 878
>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
Length = 911
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/852 (51%), Positives = 610/852 (71%), Gaps = 19/852 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R+PLI GHGNFGSID DP AAMRYTE R
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTESR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NP T EL+EY+PGPDFPTG I+G+ GI +AY TGRG +T+RG
Sbjct: 187 NLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVTMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R +II E+PYQTNK+ L+EKIA++V L+GISD+RDESDR GMR
Sbjct: 247 ATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+G+++ +P+ + L + LQ FLDFR +
Sbjct: 307 IVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G ++ LDNLD VI ++R + ++A L + + S QAD
Sbjct: 367 TRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIESYGFSATQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L E+I LE++L++R IL +I++EVI+++N ++
Sbjct: 427 AILQMQLRRLTALEAEKIQQEHEALTEKIADLEDILANRDRILAIIKEEVIQIRNAYANE 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R ++++ AD L DI +I N+++ + ++E+GY+KRM +TF QNR T GKS +++ +
Sbjct: 487 RRTLIK-ADENDLSDISLIANEQVAILVTEQGYIKRMLVDTFEAQNRATRGKSGTRMKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C +HDHVL+FSDRG+ YS RAY+IPE +R A G PLVQ+L + E++TS+I
Sbjct: 546 DGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESSRTAKGYPLVQMLPIPKEEKVTSVI 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF+ D +LVMLT G+IKK +L+ F+ IRT G+IAI L GDEL+WVR T DD V
Sbjct: 606 GVSEFSEDDYLVMLTQGGFIKKTALSAFNRIRTNGLIAISLEDGDELRWVRMATADDSVL 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ SQ GM I D +R L R T+G +M L++GD++ SMDI+P+ + +++E +DS
Sbjct: 666 IGSQRGMTIHFKADHAQLRPLGRPTKGVKSMSLREGDQLISMDILPSQVVEEVEGAIDDS 725
Query: 799 HSN----VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFV 853
+ GPW+L VS G GKRVP+S+FR +GL+ KF + D L A+ +
Sbjct: 726 DEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGDELVALRI 785
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
G D+++++VSQ G + R V IS+Q+R A GV L RL+ I + +L+
Sbjct: 786 AG--------PDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVP 837
Query: 914 VTEPETDLFLPS 925
+ E+D +PS
Sbjct: 838 HLD-ESDNEMPS 848
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 582 DEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
D+ L+ +++ G++K+ + FN ++ G I S L D + + A D VL S
Sbjct: 613 DDYLVMLTQGGFIKKTALSAFNRIRTNGLIAIS---LEDGDELRWVRMATADDSVLIGSQ 669
Query: 641 RGIVYSARAYKIPECTRNAAGTPL--VQILSLSDGERITS--IIP---VSEFAG------ 687
RG+ +K G P V+ +SL +G+++ S I+P V E G
Sbjct: 670 RGMTIH---FKADHAQLRPLGRPTKGVKSMSLREGDQLISMDILPSQVVEEVEGAIDDSD 726
Query: 688 ---------DQ--FLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQL-VPGDELKWVRCC 733
DQ ++++++ G K+V ++ F + G++A++ GDEL +R
Sbjct: 727 EDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGDELVALRIA 786
Query: 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
DD + + SQ G+++ S D I SR G RL D +A++ ++P D E
Sbjct: 787 GPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVPHLDESDNEM 846
Query: 794 TPEDSHSNVKGSSG 807
ED S V ++
Sbjct: 847 PSEDIASAVAETTA 860
>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
Length = 853
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/847 (52%), Positives = 602/847 (71%), Gaps = 25/847 (2%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S RI+P EL EE++ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +PF+
Sbjct: 7 SSRIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFR 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
KCARVVGEVLGK+HPHGD+AVYD+LVRMAQDFS+R+PLI GHGNFGSID DP AAMRYTE
Sbjct: 67 KCARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
CRL+AL+ LL DI+Q+TV+FV NFD SQ+EP +LPAR+P LLLNGASGIAVGMATNIP
Sbjct: 127 CRLQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIP 186
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGELVD L ALIH+P+ + +EL+ Y+PGPDFPTGG I+G GI +AY TGRG +T+R
Sbjct: 187 PHNLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTLR 246
Query: 321 GKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+E L++ + R +II E+PYQTNK+ L+EKIAELV K ++GI+D+RDESDR G
Sbjct: 247 AVATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDG 306
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A P +V+N+LY+ T LQ +F NM+ I++G+P+ + LK L+ FL FR
Sbjct: 307 IRVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFREE 366
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
+ RR R+ L + +ER H+++G++V L NLD VI+++R A + A L + LSE Q
Sbjct: 367 AIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSEAQ 426
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
ADAIL M LRRLT LE +K E L QI ++L+ R+ +L++IE+EV ELK +F+
Sbjct: 427 ADAILQMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAKFA 486
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
TPR S + AD G++ DID+I ND+ ++ ++++GY+KRM +TF Q+R G+ +++
Sbjct: 487 TPRRSRIVQAD-GEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRGRKGAEIK 545
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+DA+ F C HD +L+FSDRG+VY+ AY+IP +R A GTP+VQ+L + E+ITS
Sbjct: 546 EDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIPREEKITS 605
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V EF+ D++LVMLT G+IKK L FS IR+ G+IAI L GD+L+WVR D
Sbjct: 606 VIAVQEFSEDEYLVMLTRKGFIKKTPLAAFSHIRSNGLIAISLEEGDQLRWVRRTREQDT 665
Query: 739 VAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP- 795
+ + S+ GM I +S D +R L R TRG +M L+ GD++ MDI+PAA+ TP
Sbjct: 666 IIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPGDELVGMDILPAAIANRFA-TPS 724
Query: 796 -------EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA---E 845
EDS V S GPW+L ++ +G+GKRVP+ FR +G+ KF A E
Sbjct: 725 EDDSGEIEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNE 784
Query: 846 DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGK 905
D+LAA+ +V + +++++V+ G + R KV DIS Q+R A GV L RL+
Sbjct: 785 DQLAALRIVN--------AGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDA 836
Query: 906 IQSASLI 912
I +A+++
Sbjct: 837 IVTAAVL 843
>gi|354565676|ref|ZP_08984850.1| DNA gyrase, A subunit [Fischerella sp. JSC-11]
gi|353548549|gb|EHC17994.1| DNA gyrase, A subunit [Fischerella sp. JSC-11]
Length = 860
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/854 (51%), Positives = 597/854 (69%), Gaps = 35/854 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+S +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTSDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+FV NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTTDALLQDIESETVDFVNNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHNP+ T +L++Y+ GPDFPTGG ++G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVALIHNPDITNTQLMQYIHGPDFPTGGHVLGTAAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPEREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ LQ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLQVFLDFRVEAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER HI++G+++ L +LD +I ++R A TA L LSE QAD
Sbjct: 367 TRRTQYELRKAEERDHILQGLLIALSHLDAIIALIRHAADTPTAKGELITTHGLSEAQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L+ R+ IL +IE E+ LKN+F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRQEHEELQAQIADLQDILAKRERILHIIETEIQYLKNKFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G L+DID+I N++ ++ I+E+GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHGE-GDLEDIDLIANEKAVILITEQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DGVEHFLTCCDHDSLLFFSDRGVVYCLKAYQIPVGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF D++LVMLT G IKK L FS IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVSEFTSDEYLVMLTKGGNIKKTVLEAFSHIRANGLIAISLEEGDQLRWVRRAKVEDSVI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I CD +R L R TRG AM+LK+GD++ MDI+PAA+ +L TP
Sbjct: 666 IGSRQGMAIHFRCDHEQLRPLGRATRGVKAMKLKNGDELVGMDILPAAILDNL--TPVSE 723
Query: 799 HSNV-----------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841
G GPW+L ++ G+GKRVP++ FR GL+ K
Sbjct: 724 AEIAEIETEDIETEESAEVPGNGHHGPWVLVITTGGYGKRVPVAQFRLQNRAGQGLMATK 783
Query: 842 FSA---EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
F + +D+LA + +V +D+++++V+ G + R V IS+Q+R A GV +
Sbjct: 784 FKSRKIKDQLANLHIVN--------NDDEIMMVTSRGIIIRQAVNAISVQSRSATGVRVQ 835
Query: 899 RLELSGKIQSASLI 912
RL+ I +++
Sbjct: 836 RLDEDDVITGVAIV 849
>gi|428202096|ref|YP_007080685.1| DNA gyrase subunit A [Pleurocapsa sp. PCC 7327]
gi|427979528|gb|AFY77128.1| DNA gyrase, A subunit [Pleurocapsa sp. PCC 7327]
Length = 855
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/833 (51%), Positives = 597/833 (71%), Gaps = 24/833 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R+PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++LS LL DI+ +TV+FV NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLSTNALLRDIEAETVDFVDNFDGSQQEPVVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD + AL+HNP+ T +L+ Y+PGPDFPTGG I+G GI +AY TGRG I +RG
Sbjct: 187 NLGELVDGVVALLHNPQMTDTDLMRYIPGPDFPTGGQILGRAGIKEAYTTGRGSIIMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + R +II ++PYQTNK+ L+EKIAELV +K ++GISDIRDESDR GMR
Sbjct: 247 AQIETIEQHGRPDREAIIITQLPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NM+ +++G+P + LK+ LQ F+DFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPHLLSLKQFLQVFIDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER HI++G+++ L NLD VI+++R A +TA L F LSE QAD
Sbjct: 367 TRRTQYELRKAEERDHILQGLLIALSNLDAVIQLIRGAADTATAKTQLVGRFGLSEAQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L+++L+ R+ I +IEQEV ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIQAEHEELQAKIADLQDILARRERIEAIIEQEVQQIKTAHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A+ G+L D D+I N++ ++ ++E+GY+KRM NTF QNR T GK+ K++ +
Sbjct: 487 RRTEIIQAE-GELVDTDLIANEQAVILLTEQGYIKRMPVNTFGAQNRATRGKAAAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD++L+FSDRG+VY+ AY IP +R+A G P+VQ+L++S GE+ITSI+
Sbjct: 546 DVVEHFLTCCDHDNILFFSDRGVVYTLNAYHIPAGSRSARGVPIVQMLAISQGEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF + +L+MLT GYIKK +L+ FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 AVQEFTENDYLIMLTRKGYIKKTALSAFSNIRANGLIAISLEEGDQLRWVRLAREEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+ GM I D +R L R TRG AM+LK+GD++ SMDI+P+ + +
Sbjct: 666 LGSKGGMAIHFKADSQQLRPLGRATRGVKAMKLKEGDELISMDILPSQVVARIGTAEEES 725
Query: 792 ---ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDR 847
E+ S+ + + GPWLL ++ G+GKRVP+S FR +G+ KF SA+DR
Sbjct: 726 EDETLENEELVSSEEANQGPWLLAITTCGYGKRVPVSQFRLQNRAGMGVRAIKFRSAQDR 785
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
L A+ VV ++++++VS G + R V IS+Q+R A GV + RL
Sbjct: 786 LVAIHVVN--------REDEMMIVSNRGIIIRQAVDAISLQSRMATGVRVQRL 830
>gi|427417460|ref|ZP_18907643.1| DNA gyrase subunit A [Leptolyngbya sp. PCC 7375]
gi|425760173|gb|EKV01026.1| DNA gyrase subunit A [Leptolyngbya sp. PCC 7375]
Length = 932
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/874 (50%), Positives = 612/874 (70%), Gaps = 21/874 (2%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N RIV +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +P
Sbjct: 3 NPQERIVSTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRY
Sbjct: 63 FRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL AL+ LL DI+ +TV+F NFD SQ+EP+++PAR+P LLLNG+SGIAVGMATN
Sbjct: 123 TESRLHALTSHALLQDIESETVDFADNFDGSQQEPTVMPARIPQLLLNGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQEL-LEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
IPPHNLGELVD + ALI NPE T QEL L ++PGPDFPTG I+G+ GI DAY TGRG +
Sbjct: 183 IPPHNLGELVDGVIALIQNPEITSQELMLNHIPGPDFPTGAQIIGSNGIRDAYLTGRGSV 242
Query: 318 TVRGKTEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
T+R +E ++ + R +I+ E+PYQTNK+ L+EKIAELV ++ LDGISDIRDESD
Sbjct: 243 TMRAVASIETIEYPGRPDREAIIVTELPYQTNKAGLIEKIAELVNDRRLDGISDIRDESD 302
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R GMRIVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + L++ L+ FL+F
Sbjct: 303 RDGMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLALVNGEPQLLTLRQFLEVFLEF 362
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
R + RR R++L + +ER HI++G ++ LDNLD VI ++R A TA L + ++LS
Sbjct: 363 RVETITRRTRYELRKAEERDHILQGYLIALDNLDAVIALIRHAADVGTAKQELMESYELS 422
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
QADAIL M LRRLT LE K E + L E+I L ++L+ R+ IL +IE+E+ +L++
Sbjct: 423 SAQADAILQMQLRRLTALEADKIQQEHEALQEKIADLRDILARRERILAIIEEELQQLRS 482
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+ R +++E A+ +L DI +I N+++++ ++E+GY+KRM +TF QNR T GKS
Sbjct: 483 NHANERRTVIEAAED-ELTDISLIANEQVVILVTEQGYIKRMPVSTFEAQNRATRGKSGT 541
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
+++ +DA+ FI C HDH+L+F+DRG+ Y+ RAY+IPE +R A G P+VQ+L + E+
Sbjct: 542 RMKDDDAIEHFITCCTHDHMLFFTDRGVAYTLRAYQIPEGSRVARGNPIVQMLPIPREEK 601
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+TS++ V EFA D +LVMLT G+IKK +L+ F +IR G+IAI L GD+L+WVR
Sbjct: 602 VTSVLGVQEFAEDVYLVMLTQGGFIKKTALSAFGNIRANGLIAISLEEGDQLRWVRLARA 661
Query: 736 DDLVAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
+D + + SQ GM I + D +R L R TRG +M L+ GD++ SMDI+PAA+ +
Sbjct: 662 EDSIIIGSQQGMTIHFRADNDQLRPLGRPTRGVKSMSLRHGDRLISMDILPAAVTAQVAA 721
Query: 794 T----PEDSHSNV--KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
+ E+ + V +G GPW+L ++ G GKRVP+ +FR +GL+G KF E D
Sbjct: 722 SDVGDDENDEATVADEGDCGPWVLIIAAGGLGKRVPVDNFRLQNRAGMGLVGMKFRKEND 781
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
L A+ +V S ++++LV+Q G + R + ISIQ+R A GV L RL+ I
Sbjct: 782 ELVALRIVN--------SKDELMLVTQRGIIIRQAIDAISIQSRMATGVQLQRLDGDDAI 833
Query: 907 QSASLISVTEPETDLFLPSTSDKLATESGVSEML 940
+ +++ E D+ ++ TE GV+E +
Sbjct: 834 AAVAVVPELEIADDVTEDGVTEDGVTEDGVTEAV 867
>gi|359460097|ref|ZP_09248660.1| DNA gyrase subunit A [Acaryochloris sp. CCMEE 5410]
Length = 871
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/869 (51%), Positives = 607/869 (69%), Gaps = 39/869 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L +EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 11 RIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 71 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAAMRYTECR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+Q+TV+F NFD SQ+EP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 131 LQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGMATNIPPH 190
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNPE T EL++ +PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 191 NLGEVIDGLVALIHNPEITDLELMKLIPGPDFPTGGRILGTAGIREAYTTGRGSITMRGV 250
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E L+ + R +II E+P+QTNK+ L+E+IAE V +K L+GISDIRDESDR GMR
Sbjct: 251 AEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRDESDRDGMR 310
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NM+ ++ G P+ + LK+ L FL+FR V
Sbjct: 311 IVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLSLKQFLSVFLEFREDAV 370
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L NLD VI+++R+A ++ A L D F LSE QAD
Sbjct: 371 LRRTRYQLRKAQERDHLLQGLLIALGNLDAVIQLIRQAADSAVARQELMDRFGLSETQAD 430
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L E+I LE++L+ R+ +L++IE EV ELK +F++P
Sbjct: 431 AILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIETEVTELKAKFASP 490
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ LDDID+I ND+ ++ ++E+GYVKRM +TFN Q+R T G++ K++ +
Sbjct: 491 RRTLIE-ANLADLDDIDLIANDQAVILVTEQGYVKRMPVDTFNAQSRATRGRAGAKIKED 549
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ F C HD VL+FSDRG+VY RAY+IP +R A G PLVQ+L + E+ITS+I
Sbjct: 550 DAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARGVPLVQLLPIPREEKITSVI 609
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVM+T G+IKK +L FS+IR G+IAI L GD L+WVR +D +
Sbjct: 610 PVSEFSEDEYLVMMTAGGFIKKTALAAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIV 669
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+ GM I D +R L R TRG AMRL++GD+ MDI+P+++ L
Sbjct: 670 IGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREGDEFIGMDILPSSVVATLGNATDAE 729
Query: 792 -----------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840
E + S GPW+L ++ +G GKRVP++ FR G+
Sbjct: 730 EEEADDPDIVVEDDANEEESETIEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTAT 789
Query: 841 KF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
KF D++AA+ +V AED +++LV+ G V R V DIS Q+R A GV +
Sbjct: 790 KFKKLKTPDQMAALRIVN---AED-----ELMLVTSRGIVIRQAVTDISSQSRAATGVRV 841
Query: 898 MRLELSGKIQSASLI-----SVTEPETDL 921
RL+ I + +L+ S E ET+L
Sbjct: 842 QRLDEDDYIAAVALVPPEDLSDEEGETEL 870
>gi|443316636|ref|ZP_21046073.1| DNA gyrase, A subunit [Leptolyngbya sp. PCC 6406]
gi|442783773|gb|ELR93676.1| DNA gyrase, A subunit [Leptolyngbya sp. PCC 6406]
Length = 873
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/828 (51%), Positives = 588/828 (71%), Gaps = 19/828 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P +L EM+ SY+ Y+MSV++GRALPD +DGLKPVHRRIL+AMHELGL++ +PF+KCA
Sbjct: 3 IIPTDLRNEMSRSYLEYAMSVIVGRALPDAKDGLKPVHRRILYAMHELGLTADRPFRKCA 62
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R+PLI GHGNFGS+D DP AAMRYTECRL
Sbjct: 63 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRWPLINGHGNFGSVDNDPPAAMRYTECRL 122
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+AL+ LL DI+ DTV F FD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPHN
Sbjct: 123 QALTTDALLQDIESDTVEFGDTFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHN 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL+D + ALIHNPE TL EL+ +PGPDFPTG I+G GI DAY TGRG +T+RG
Sbjct: 183 LGELLDGVIALIHNPEITLNELIALIPGPDFPTGAQILGISGIRDAYTTGRGSVTMRGVA 242
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E L+ + + R +II E+PYQTNK+ ++E+IAE+V + L+GISDIRDESDR GMRI
Sbjct: 243 AIETLEQRGRPDRDAIIITELPYQTNKAAMIERIAEMVNERRLEGISDIRDESDRDGMRI 302
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQ++F NM+ ++DG+P+ +GLK +L+ FLDFR +
Sbjct: 303 VIELKRDAYPRVVLNNLYKQTPLQNNFGVNMLALVDGEPQLLGLKRMLEVFLDFRVETIT 362
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G ++ LDN+D +I ++R A TA L + LSE QADA
Sbjct: 363 RRTRYELRKAEERDHILQGYLIALDNMDAIIALIRHAADTPTAKQELISSYGLSEMQADA 422
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE K E + L +I LE++L+ R+ IL +IE E+ +++R++ PR
Sbjct: 423 ILQMQLRRLTALETDKIQQEHEDLRAKITDLEDILARRERILGIIETELAYIRDRYANPR 482
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+++E DS +L DI +I N+++++ ++E GY+KRM TF Q+R T GK+ +++ +D
Sbjct: 483 RTVIERDDS-ELTDISLIANEQVVILVTEYGYIKRMPVTTFEAQSRATRGKAGARIKEDD 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI C HDHVL+FSDRG+ YS RAY++PE +R A G P+VQ+L + E+ITS++
Sbjct: 542 GIQHFITCCCHDHVLFFSDRGVAYSLRAYQVPEGSRAAQGVPIVQMLPIPKEEKITSVLA 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V F D++L+MLT G+IKK +L+ FS+IR G+IAI L GDEL+WVR D + +
Sbjct: 602 VQGFTDDEYLIMLTRGGFIKKTALSAFSNIRANGLIAISLEEGDELRWVRLGRTSDSILI 661
Query: 742 ASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHK-----DLERT 794
S +GM I + D +R L R TRG AM L++GD++ SMD++P+ + + E
Sbjct: 662 GSNHGMAIHFKADDDQLRPLGRPTRGVRAMNLRNGDELISMDVLPSQITDAVALAEAEGN 721
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFV 853
EDS S GPW+L ++ G GKRVP+S FR +GL KF + D L A+ V
Sbjct: 722 DEDSEEAAANSQGPWVLVITARGMGKRVPVSLFRLQNRAGMGLQALKFRLDNDSLVALLV 781
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
V S E+++LV+ G + R ++ ISIQ+R A+GV + RL+
Sbjct: 782 VNES--------EELMLVTNRGIIIRQRINAISIQSRAAQGVRVQRLD 821
>gi|411118372|ref|ZP_11390753.1| DNA gyrase subunit A [Oscillatoriales cyanobacterium JSC-12]
gi|410712096|gb|EKQ69602.1| DNA gyrase subunit A [Oscillatoriales cyanobacterium JSC-12]
Length = 907
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/859 (51%), Positives = 597/859 (69%), Gaps = 27/859 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
P RIVP +L EM SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +
Sbjct: 7 PPSQDRIVPTDLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDR 66
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
PF+KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMR
Sbjct: 67 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRAPLIDGHGNFGSVDNDPPAAMR 126
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL L+ +L DI+ +TV+FV NFD SQ+EP +LPAR P LLLNG+SGIAVGMAT
Sbjct: 127 YTESRLRPLTTNAMLQDIESETVDFVDNFDGSQQEPIVLPARFPQLLLNGSSGIAVGMAT 186
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPHNLGEL+D L ALIHNPE T EL++Y+PGPDFPTGG I+G I +AYRTGRG I
Sbjct: 187 NIPPHNLGELIDGLIALIHNPEMTDLELMQYIPGPDFPTGGQILGTSAIREAYRTGRGSI 246
Query: 318 TVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
+RG +E L+ + + R +II E+PYQTNK+ L+EKIAELV ++ L+GISDIRDESD
Sbjct: 247 IMRGIANIETLEQRGRPEREAIIITELPYQTNKAALIEKIAELVNDRRLEGISDIRDESD 306
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R GMRIVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + L + L FLDF
Sbjct: 307 RDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLTLSQFLHVFLDF 366
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
R + RR +++L + +ER HI++G++V L NLD +I ++R A TA L + + LS
Sbjct: 367 RVETITRRTQYQLRKAQERDHILQGLLVALANLDAIIELIRHAADAPTARQQLIERYDLS 426
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
E QADAIL M LRRLT LE +K E L QI L+++L+ R+ IL +IE E+ E+K
Sbjct: 427 ETQADAILQMQLRRLTALEAEKIQQEHDDLQRQIADLQDILARRERILSIIETELNEVKT 486
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
++TPR +++E ++ ++ D D+I N+ ++ ++E+GY+KRM NTF QNR T GKS
Sbjct: 487 AYATPRRTVIEQSED-EIADADLIANERAVILVTEQGYIKRMPVNTFESQNRATRGKSGT 545
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
+++ +D + F+ CR HD VL FSDRG+VY +AY+IP +R + GTP+VQ+L + E+
Sbjct: 546 RMKEDDTVQHFLACRDHDSVLLFSDRGVVYCVKAYQIPTGSRTSRGTPIVQLLPIPVDEK 605
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
ITSI+ V+EF D++LVMLT NGYIKK +L+ FS+IRT G+IAI L GD+L+WVR
Sbjct: 606 ITSIVSVTEFTEDEYLVMLTCNGYIKKTALSAFSNIRTNGLIAISLEEGDQLRWVRRARA 665
Query: 736 DDLVAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL-- 791
+D + + S G I ++ + +R L R TRG AM L+ GD++ +DI+P+ + DL
Sbjct: 666 EDTIIIGSSQGKSIHFRANHEQLRPLGRATRGVRAMNLRTGDRLVGLDILPSDVVADLGA 725
Query: 792 ---ERTPEDSHSNVKGSS--------GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840
+ E+ S G GPW+L V+ G+GKRVP+S FR +G++
Sbjct: 726 ALETESGEEEASTTVGEEVIETSAPLGPWILIVTAGGYGKRVPMSQFRLQNRAGMGIVAT 785
Query: 841 KF-SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
KF DR+AA+ +V E DE +++++ G + R V IS Q+R A GV L R
Sbjct: 786 KFRKTGDRMAALRIV-------NEGDE-LMMITNRGIIIRQSVDAISCQSRAASGVRLQR 837
Query: 900 LELSGKIQSASLISVTEPE 918
L+ +I +A++I + E
Sbjct: 838 LDEDDEIVAATVIPASNEE 856
>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
Length = 871
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/869 (51%), Positives = 608/869 (69%), Gaps = 39/869 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L +EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 11 RIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 71 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAAMRYTECR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+Q+TV+F NFD SQ+EP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 131 LQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGMATNIPPH 190
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNPE T EL++ +PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 191 NLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTTGRGSITMRGV 250
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E L+ + R +II E+P+QTNK+ L+E+IAE V +K L+GISDIRDESDR GMR
Sbjct: 251 AEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRDESDRDGMR 310
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NM+ ++ G P+ + L++ L FL+FR +
Sbjct: 311 IVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLSVFLEFREDAI 370
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR RF+L + +ER H+++G+++ LDNLD VI+++R+A ++ A L D F LS+ QAD
Sbjct: 371 LRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELMDGFGLSDTQAD 430
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L E+I LE++L+ R+ +L++IE EV ELK +F++P
Sbjct: 431 AILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIETEVTELKTKFASP 490
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ LDDID+I ND+ ++ ++E+GYVKRM +TFN Q+R T G++ K++ +
Sbjct: 491 RRTLIE-ANLADLDDIDLIANDQAVILVTEQGYVKRMPVDTFNAQSRATRGRAGAKIKED 549
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ F C HD VL+FSDRG+VY RAY+IP +R A G PLVQ+L + E+ITS+I
Sbjct: 550 DAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARGVPLVQLLPIPREEKITSVI 609
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVM+T G+IKK +L FS+IR G+IAI L GD L+WVR +D +
Sbjct: 610 PVSEFSEDEYLVMMTAGGFIKKTALAAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIV 669
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+ GM I D +R L R TRG AMRL++GD+ MDI+ +A+ + L
Sbjct: 670 IGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREGDEFIGMDILSSAVVETLGNATDAD 729
Query: 792 -----------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840
E + S GPW+L ++ +G GKRVP++ FR G+
Sbjct: 730 DEETDDPDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTAT 789
Query: 841 KF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
KF D+LAA+ +V AED +++LV+ G V R V DIS Q+R A GV +
Sbjct: 790 KFKKLKTPDQLAALRIVN---AED-----ELMLVTSRGIVIRQAVTDISSQSRAATGVRV 841
Query: 898 MRLELSGKIQSASLI-----SVTEPETDL 921
RL+ I + +L+ S E ET+L
Sbjct: 842 QRLDEDDYIAAVALVPPEDLSDEEGETEL 870
>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
Length = 871
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/862 (50%), Positives = 594/862 (68%), Gaps = 40/862 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P++L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PFKKC
Sbjct: 7 RIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFKKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PL+ GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L A+IHNPE T EL++Y+ GPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GI+DIRDESDR GMR
Sbjct: 247 ANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N+LY+ T LQ++F NM+ +++ +P+ + LK+ L FLDFR +
Sbjct: 307 VVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L LD +I ++R AP TA L + LSE QAD
Sbjct: 367 ARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELITTYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I L+++L+ R+ +L++IE EV +LK F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHDELQAKITDLQDILARRERVLEIIETEVAQLKTNFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G+LDD D+I N++ ++ ++E+GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVILPGE-GELDDRDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FS+RG+VY RAY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ +++LVMLT G IKK L FS IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVDEFSSEEYLVMLTKGGNIKKTELAAFSHIRANGLIAISLEEGDQLRWVRRARVEDSVI 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+NGM I C + +R LSR TRG AM+LK+ D++ MDI+PAA+ + L
Sbjct: 666 IGSRNGMAINFRCNHEQLRPLSRATRGVKAMKLKNKDELVGMDILPAAILETLDIVTEAE 725
Query: 792 ------------------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLN 833
E T E + G GPW+L ++ G+GKRVP++ FR
Sbjct: 726 TEDIEAIETIETEDIEITETTEESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRA 785
Query: 834 RVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
GL+ KF +D+LA + +V D+++++V+ G + R V ISIQ+R
Sbjct: 786 GQGLMATKFKNRKTKDKLATLRIV-------NNDDDEIMMVTNRGIIIRQAVNAISIQSR 838
Query: 891 YARGVILMRLELSGKIQSASLI 912
A GV + RL+ I +++
Sbjct: 839 SATGVRVQRLDEDDAITGVAIV 860
>gi|427706591|ref|YP_007048968.1| DNA gyrase subunit A [Nostoc sp. PCC 7107]
gi|427359096|gb|AFY41818.1| DNA gyrase subunit A [Nostoc sp. PCC 7107]
Length = 862
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/875 (49%), Positives = 604/875 (69%), Gaps = 43/875 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSAALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHNPE T +L++Y+ GPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVALIHNPEITDLQLMQYIHGPDFPTGAQILGTAAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV +K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPEREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L+ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLEVFLDFRIISI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L +LD +I ++R AP TA L + LSE QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALSHLDTIINLIRHAPDAPTAKGELITSYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L E+I L ++L+ R+ IL++IE E+ +K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEELQERIGDLRDILARRERILEIIEAEISHIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ ++ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTIITHAE-GEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTVEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ D++LVMLT G IKK +L FS IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFSDDEYLVMLTKGGNIKKTALAAFSHIRANGLIAISLEEGDQLRWVRRARVEDSII 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE------ 792
+ S+ GM I C + +R L R TRG +M+LK GD++ MDIIPAA+ + L+
Sbjct: 666 VGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDIIPAAILETLDTGTEES 725
Query: 793 -----------RTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841
E + V G+ GPW+L ++ G+GKRVP++ FR GL+ K
Sbjct: 726 EIEEIETEDIENAEETTEVEVTGNVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATK 785
Query: 842 F---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
F +D+LA + +V SD+++++V+ G + R ISIQ+R A GV +
Sbjct: 786 FKNRKTKDKLATLQIVN--------SDDEIMMVTNRGIIIRQATNAISIQSRSATGVRVQ 837
Query: 899 RLELSGKIQSASLISVTEPETDLFLPSTSDKLATE 933
RL+ I +++ P T D+ TE
Sbjct: 838 RLDEDDAITGVAIVP----------PDTGDEEETE 862
>gi|428774594|ref|YP_007166382.1| DNA gyrase subunit A [Cyanobacterium stanieri PCC 7202]
gi|428688873|gb|AFZ48733.1| DNA gyrase subunit A [Cyanobacterium stanieri PCC 7202]
Length = 861
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/854 (50%), Positives = 601/854 (70%), Gaps = 22/854 (2%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++ RIVP L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +P
Sbjct: 3 SIQERIVPTNLTNEMSNSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRY
Sbjct: 63 FRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSVDNDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TECRL++L+ LL DI+ +TV+F+ NFD SQ+EP +LPAR+P LLLNGA+GIAVGMATN
Sbjct: 123 TECRLQSLATNGLLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGATGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGEL+D A+IHNPE T EL++Y+PGPDFPTG I+G GI +AY TGRG +T
Sbjct: 183 IPPHNLGELIDGTIAMIHNPEITDIELMQYIPGPDFPTGAQILGRQGIKEAYTTGRGSVT 242
Query: 319 VRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
+RG +E + + + + +I+ E+PYQTNK+ L+EKIAELV +K +DGISDIRDESDR
Sbjct: 243 MRGVASIETISQRGRQDKEAIIVTELPYQTNKASLIEKIAELVNDKKIDGISDIRDESDR 302
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
+GMRIVIELKR A +V+N+LY+ T +QS+F CNM+ ++ +P+ + L++ LQ FL+FR
Sbjct: 303 NGMRIVIELKRDAYARVVLNNLYKQTTIQSNFGCNMLALVGNEPQLLTLRKFLQVFLNFR 362
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSE 496
+ RR +++L + +ER HI++G+++ L NLD VIR++R A ++A L D+ LSE
Sbjct: 363 VEAITRRTQYRLRKAEERDHILQGLLIALGNLDAVIRLIRGAADTASAKQELVDDLSLSE 422
Query: 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556
QADAIL M LRRLT LE +K E + L+ QI L ++L R+ I +IE+E+ E+KN
Sbjct: 423 FQADAILQMQLRRLTALEAEKIEAEHQDLLTQITDLRDILERRERIDAIIEEELTEIKNI 482
Query: 557 FSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
+TPR + + D G L DID+I N+++ + ++E+GY+K+M +TF QNR T GK+ K
Sbjct: 483 HATPRRTEIIQGD-GDLVDIDLIANEQVAIILTEQGYLKKMLVSTFEAQNRATRGKAGAK 541
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
++ +D + F+ HD +L+FSDRG+VY+ AY+IP +RNA G P++Q+L +S E+I
Sbjct: 542 IKDDDEVQHFLTGCEHDTILFFSDRGVVYALNAYQIPSSSRNARGMPIIQMLPISSEEKI 601
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
TSI+ VSEF ++LVMLT NG+IKK +L+ F +IR+ G+IAI L GDEL+WVR T D
Sbjct: 602 TSILAVSEFTDHEYLVMLTRNGFIKKTALSAFGNIRSNGLIAISLAEGDELRWVRLATAD 661
Query: 737 DLVAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA--------A 786
D + + S+ GM I + D +R LSR +G +M+L+ GD++ SMDIIP+ A
Sbjct: 662 DSILIGSRRGMAIHFHADNDQLRPLSRTAKGVKSMKLRKGDQLISMDIIPSQVVATIGEA 721
Query: 787 LHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAE 845
+L+ ++ +N PW L V+ SG+GKRVP+S FR +GL +F +
Sbjct: 722 DENELDNDVDEELTNDTAKDAPWALAVTTSGYGKRVPVSQFRLQRRAGLGLKAIRFRKSN 781
Query: 846 DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGK 905
+ LAA+ +V D++ ++++ G + R V +S+Q+R A GV + +L+
Sbjct: 782 EELAALHIVN--------PDDEFMIITARGIIIRCDVNAVSLQSRNASGVRVQKLDDDDA 833
Query: 906 IQSASLISVTEPET 919
I + +L+ + ET
Sbjct: 834 IAAVALVPPSSEET 847
>gi|440681566|ref|YP_007156361.1| DNA gyrase subunit A [Anabaena cylindrica PCC 7122]
gi|428678685|gb|AFZ57451.1| DNA gyrase subunit A [Anabaena cylindrica PCC 7122]
Length = 886
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/867 (49%), Positives = 594/867 (68%), Gaps = 39/867 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+K
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPFRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGKFHPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ L+ A LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQGLTSAALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNPE T +L++Y+ GPDFPTG L++G I +AY TGRG IT+RG
Sbjct: 187 NLGEVIDGLVALIHNPEITPVQLMQYIHGPDFPTGALVLGTAAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + + +II E+PYQTNK+ L+EKIAELV +K +DGISDIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPEKEAIIITELPYQTNKAALIEKIAELVNDKRIDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + +K+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTIKDFLTVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L +LD +I ++R AP TA L + LSE QAD
Sbjct: 367 NRRTRYQLRKAEERDHLLQGLLIALSHLDAIIILIRHAPDAPTAKGELITTYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L I L+++L R+ +L++IE E+ ++K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEELQNVIADLQDILDRRERVLEIIETEISQIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G LDD+D+I N+++L+ I+++GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTLITHGE-GDLDDLDLIANEKVLILITKQGYIKRMPVSTFEAQSRATRGKAGAKVKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F C HD VL+FSDRG+VYS R Y+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFFTCCDHDSVLFFSDRGVVYSMRTYQIPLGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF D++LVMLT G IKK SL FS IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVDEFRDDEYLVMLTKGGNIKKTSLAAFSHIRANGLIAISLEEGDQLRWVRRAKVEDSVI 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+NGM I C + +R L R TRG +M+LK GD++ MDI+PAA+ + L E
Sbjct: 666 IGSRNGMAIHFRCTQEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAVLETLNTETEAE 725
Query: 799 HSNV-----------------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV 835
+ S+GPW+L ++ G+GKRVP+ FR
Sbjct: 726 IEEIIETEEIITETEEIIETEETAEVPNNSTGPWVLVITMGGYGKRVPVGQFRLQNRAGQ 785
Query: 836 GLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
GL+ KF +D+LA + +V +DE++++V+ G + R V IS+Q+R A
Sbjct: 786 GLMATKFKNRKTKDKLATLHIVN--------NDEEIMMVTNRGIIIRQAVNAISVQSRSA 837
Query: 893 RGVILMRLELSGKIQSASLISVTEPET 919
GV + RL+ I +++ ET
Sbjct: 838 TGVRVQRLDEDDAITGVAIVPADTGET 864
>gi|443311603|ref|ZP_21041229.1| DNA gyrase, A subunit [Synechocystis sp. PCC 7509]
gi|442778332|gb|ELR88599.1| DNA gyrase, A subunit [Synechocystis sp. PCC 7509]
Length = 879
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/870 (49%), Positives = 599/870 (68%), Gaps = 49/870 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLTGDSLLRDIEAETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNPE T EL++Y+PGPDFPTGG I+G I +AY TGRG I +RG
Sbjct: 187 NLGEVIDGLVALIHNPEITDLELMQYIPGPDFPTGGQILGTAAIKEAYTTGRGSICMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 247 ATIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N+LY+ T +Q++F NM+ +++ P+ + L++ LQ FLDFR +
Sbjct: 307 VVIELKRDAYPRVVLNNLYKQTPVQANFGANMLALVNNDPQLLTLRQFLQVFLDFRIVSI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L NLD +I +R+A + TA L + + LSE+QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALANLDAIIITIRQAADSPTAKVELIESYSLSEQQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L QI L+++L+ R+ IL+++E EV ++K STP
Sbjct: 427 AILQMQLRRLTALEADKIRHEHDDLQVQINDLQDILARRERILEIVETEVGQIKAAHSTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E D G+L DID+I N++ L+ ++E+GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTVIE-RDLGELGDIDLIANEKALILLTEQGYIKRMPVSTFEAQSRATRGKAGAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS +AY+IP +R + G P+VQ+L + E+ITSI+
Sbjct: 546 DGIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPAASRTSRGAPIVQMLPIPRNEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF +++LVMLT NGYIKK L FS+IR G+IAI L GD+L+WVR N+D +
Sbjct: 606 PVSEFTSEEYLVMLTRNGYIKKTELTAFSNIRANGLIAISLEDGDQLRWVRRARNEDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S++GM I ++ + +R L R TRG AM+LK GD++ MDI+P+A+ L D+
Sbjct: 666 IGSRSGMAIHFRTNKEQLRPLGRATRGVRAMKLKAGDELIGMDILPSAVLATLPVLDNDT 725
Query: 799 ---------------------------------HSNVKGSSGPWLLFVSESGHGKRVPLS 825
V +GPW+L ++ G+GKRVP++
Sbjct: 726 EEVEIEEVEVTDTEVEIAEVEVIETEVEITEGEEVTVTEGTGPWVLIITMGGYGKRVPVA 785
Query: 826 SFRKLPLNRVGLIGYKFSA---EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
F+ G I KF +D+LAA+ VV +D+++++V+ G + R V
Sbjct: 786 QFKLYNRATKGKIATKFKPRKMQDKLAALCVVN--------TDDELMMVTSRGIIIRQTV 837
Query: 883 RDISIQARYARGVILMRLELSGKIQSASLI 912
I Q+R A GV + RL+ I +L+
Sbjct: 838 NAIPTQSRTATGVRVQRLDEDDAIADVALV 867
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 673 GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVP---GDEL 727
GE +T V+E G +++++TM GY K+V + F T G IA + P D+L
Sbjct: 757 GEEVT----VTEGTG-PWVLIITMGGYGKRVPVAQFKLYNRATKGKIATKFKPRKMQDKL 811
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ DD + M + G++I + + I + SR G RL + D +A + ++P
Sbjct: 812 AALCVVNTDDELMMVTSRGIIIRQTVNAIPTQSRTATGVRVQRLDEDDAIADVALVP 868
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL---RVNDAMSDFIVCRAHDHVLYFSDR 641
+L I+ GY KR+ F L NR T GK K ++ D ++ V D ++ + R
Sbjct: 770 VLIITMGGYGKRVPVAQFKLYNRATKGKIATKFKPRKMQDKLAALCVVNTDDELMMVTSR 829
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
GI+ IP +R A G VQ L D +++P
Sbjct: 830 GIIIRQTVNAIPTQSRTATGV-RVQRLDEDDAIADVALVP 868
>gi|434391821|ref|YP_007126768.1| DNA gyrase subunit A [Gloeocapsa sp. PCC 7428]
gi|428263662|gb|AFZ29608.1| DNA gyrase subunit A [Gloeocapsa sp. PCC 7428]
Length = 860
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/873 (49%), Positives = 605/873 (69%), Gaps = 40/873 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD +VYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDGSVYDALVRMAQDFSMRLPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+A + LL DI+ +TV+F NFD SQ+EP +LPAR+P LLLNGASGIAVGMATNIPPH
Sbjct: 127 LQAFTGDALLRDIESETVDFTDNFDGSQQEPIVLPARVPQLLLNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALI NPE T +L++Y+PGPDFPTGG ++G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVALIRNPEITDNQLMQYIPGPDFPTGGQVLGTSGIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+E+IAE+V K L+GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPEREAIIITELPYQTNKAALIERIAEMVNEKRLEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELK A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKNNAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLTLKQFLNVFLDFRIDAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L NLD +I ++R A TA L + + LS+ QAD
Sbjct: 367 SRRTRYELRKAEERDHLLQGLLIALANLDGIIELIRHAADAPTARHELIERYGLSDAQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L QI L ++L+ R+ +L++IE EV ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIRQEHEELQLQIADLRDILARRERVLEIIETEVTQIKTTHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E D G++ D D+I N++ L+ ++E+GY+KRM + F Q+R T GK+ +++ +
Sbjct: 487 RRTVIE-PDEGEIGDTDLIANEKALILVTEQGYIKRMPIDAFEAQSRATRGKAATRMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITS++
Sbjct: 546 DGIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTSRGTPMVQMLPIPKDEKITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVMLT GYIKK L+ FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVSEFSSDEYLVMLTRGGYIKKTELSAFSNIRANGLIAISLEEGDQLRWVRRARVEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT---- 794
+ S+ GM I D +R L R TRG AM+L+DGD++ MDI+P+++ +L +
Sbjct: 666 IGSRYGMAIHFRTDHEQLRPLGRATRGVRAMKLRDGDELIGMDILPSSVLANLNSSVTAD 725
Query: 795 ---------PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA- 844
E+S + GPW+L V+ G+GKRVP++ F+ G I KF +
Sbjct: 726 AEADDDDETEENSELLENNTQGPWVLIVTMGGYGKRVPVTQFKLYNRATKGKIATKFKSR 785
Query: 845 ---EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+D+LAA+ +V E+DE +++V+ G + R V+ IS Q+R A GV + RL+
Sbjct: 786 KGFKDQLAALHIV-------NENDE-LMIVTSRGIIIRQAVKAISPQSRSATGVRVQRLD 837
Query: 902 LSGKIQSASLISVTEPETDLFLPSTSDKLATES 934
I + +L+ P SD TE+
Sbjct: 838 EDDAIAAVALVP----------PDVSDAAETEN 860
>gi|428214185|ref|YP_007087329.1| DNA gyrase subunit A [Oscillatoria acuminata PCC 6304]
gi|428002566|gb|AFY83409.1| DNA gyrase subunit A [Oscillatoria acuminata PCC 6304]
Length = 911
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/893 (48%), Positives = 603/893 (67%), Gaps = 49/893 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KC
Sbjct: 7 RIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++LS +L DIDQ+TV+F+ NFD SQ+EP +LP R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLSMDAMLRDIDQETVDFIDNFDGSQQEPIVLPTRVPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHNPE T EL++Y+PGPDFPTGG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELMDGLVALIHNPEITDVELMQYIPGPDFPTGGQILGVTSIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + + ++I E+PYQTNK+ ++E+IAE+V K L+GISDIRDESDR GMR
Sbjct: 247 AAIETIEHRGRPDKDAIVITELPYQTNKASMIERIAEMVNEKRLEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++ +P+ + L++ L FL+FR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQLLTLRQFLTVFLEFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R++L + +ER H+++G+++ L+NLD +I ++R A +A L ++ SE QAD
Sbjct: 367 ERRTRYELRKAEERDHLLQGLLIALENLDSIIALIRRAADTPSAKQELIANYEFSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L I L+++L+ R+ +L++IE E ELK +FSTP
Sbjct: 427 AILQMQLRRLTALEADKIQQEHDDLQLTIADLKDILARRERVLEIIENEASELKTKFSTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ G++D D+I N++ L+ I+E+GY+KRM NTF Q+R T GKS K++ +
Sbjct: 487 RRTVIEHAE-GEIDVTDLIANEKALVMITEQGYIKRMPVNTFEAQSRATRGKSGAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D ++ F+ CR HD +L+FSDRG+VY AY+IP +R A G + Q+L + E+ITS++
Sbjct: 546 DGIAHFLTCRDHDAILFFSDRGVVYCLNAYQIPTGSRTARGMAITQMLPIPFNEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF+ +++LVMLT GYIKK +L+ FS+IR G+IAI L GDEL+WVR +D +
Sbjct: 606 SVEEFSDEEYLVMLTKGGYIKKTALSAFSNIRANGLIAISLSEGDELRWVRKSRPEDTII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S GM I D +R L R TRG +M L+ GD + SMD++P+ + +E ED
Sbjct: 666 IGSAKGMAIHFKADHKQLRPLGRATRGVKSMNLRKGDNIISMDVLPSQVTAAMEEAIEDE 725
Query: 799 H-------------------------------SNVKGSS---GPWLLFVSESGHGKRVPL 824
+ NV +S GPW L ++ G GKRVP+
Sbjct: 726 NLELDVELDAELDIELEQEETDLQTEETEGEEENVAETSSYPGPWALVITTCGFGKRVPV 785
Query: 825 SSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+ FR G+ KF E DRLAA+ +V D+++++V+ G + R +
Sbjct: 786 TQFRLQRRAGKGVCAIKFRNEKDRLAALRIVN--------EDDELMIVTNRGIIIRQASK 837
Query: 884 DISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGV 936
IS Q+R ARGV + RL+ S I +L+ + E DL + ++ E+GV
Sbjct: 838 AISSQSRSARGVRVQRLDSSDAIAGVALVPASGEEDDL-TSENAIEIEMEAGV 889
>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
gi|354552419|ref|ZP_08971727.1| DNA gyrase, A subunit [Cyanothece sp. ATCC 51472]
gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
gi|353555741|gb|EHC25129.1| DNA gyrase, A subunit [Cyanothece sp. ATCC 51472]
Length = 862
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/852 (51%), Positives = 600/852 (70%), Gaps = 24/852 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+ DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNP+ + +EL++ +PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II ++PYQTNK+ L+E+IA+LV K +DGISDIRDESDR GMR
Sbjct: 247 AQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N++Y+ T +Q +F NM+ +++G+P+ + +K+ LQ FLDFR +
Sbjct: 307 VVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD VI+++R A S+A L EF LS QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFGLSPVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L+++L+ R+ I +IE E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEDELTQIKTIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM +TF Q R T GK+ K++ +
Sbjct: 487 RRTEIVH-DDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQRATRGKAAAKIKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY+ AY+IP +R A G P+VQ+L + E+ITSI+
Sbjct: 546 DVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQMLPIPKDEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D FLVMLT NGYIKK +L+ FS+IRT G+IAI L GD+L+WVR +D +
Sbjct: 606 AVSEFREDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQLRWVRLTREEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I D +R L R TRG AM+LK GD++ SMD++PA + + ED
Sbjct: 666 LGTRKGMAIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDVLPAQVTAGIGDAAEDE 725
Query: 799 H---------SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRL 848
+ + + GPW+L ++ G+GKRVP+S FR +G+ KF S D L
Sbjct: 726 DVLENETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFKSKTDCL 785
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
A++ VV AED ++++VS G + R V IS+Q+R A GV + RL+ I +
Sbjct: 786 ASLHVVN---AED-----ELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDDDDAIAA 837
Query: 909 ASLISVTEPETD 920
+L+ PETD
Sbjct: 838 VALVP-PAPETD 848
>gi|434388116|ref|YP_007098727.1| DNA gyrase, A subunit [Chamaesiphon minutus PCC 6605]
gi|428019106|gb|AFY95200.1| DNA gyrase, A subunit [Chamaesiphon minutus PCC 6605]
Length = 868
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/855 (50%), Positives = 596/855 (69%), Gaps = 25/855 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIVPTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ +L DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTMDAVLRDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + ALI NPE T EL++Y+PGPDFPTG I+G I +AY TGRG I +RG
Sbjct: 187 NLGELIDGVVALIENPEITDMELMQYIPGPDFPTGAQILGTTPIKEAYATGRGSIVMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E L+ K + R +II E+P+QTNK+ L+E+IAE+V + L+GISDIRDESDR GMR
Sbjct: 247 ANIETLEYKGRPDREAIIITELPFQTNKAALIERIAEMVNDHKLEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F CNM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQTNFGCNMLALVNGEPQLLSLKKFLTVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H++EG+++ L NLD VIR++R A ++TA + + F+LSE Q+D
Sbjct: 367 TRRTRYELRKAEERDHLLEGLLIALANLDAVIRLIRGAADSATAKQEMIERFQLSELQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I L ++L+ R+ IL +I+ E+ E+K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIHLEHNELTLKITDLRDILARRERILAIIQTEIAEIKATFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E + G L+D D+I N++ L+ ++E+GY+KRM +TF Q+R T GK ++
Sbjct: 487 RRTLIEHGE-GDLEDTDLIANEKSLILVTEQGYIKRMPVSTFETQSRATRGKKGTGMKEE 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ F+ C HD +L FSDRG+VY+ +AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DAIEHFLTCCDHDTILLFSDRGVVYTVKAYQIPVSSRTARGIPIVQMLPIPREEKITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF D++L+MLT G+IKK +L+ F+S+R G+IAI L GD L+WVR D
Sbjct: 606 PVSEFLDDEYLIMLTQKGFIKKTALSAFASVRANGLIAISLEDGDSLRWVRRAKETDSAI 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++NGM I + D +R L R TRG +M LK GD++ SMDI+P+ + + ED
Sbjct: 666 IGTRNGMTIHFRTDRDQLRPLGRATRGVKSMSLKKGDELISMDILPSQVIAQMVAASEDP 725
Query: 799 HSN-----------VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
V GPW+L V+ G GKRVP++ FR +G++ KF + D
Sbjct: 726 GVEDIDDTVAEDVVVPAGEGPWILVVTTGGLGKRVPVTQFRLQNRAGMGVLAIKFRKKGD 785
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
RLAA+ VV DE++++V+ G + R + IS Q+R A GV + +L+ I
Sbjct: 786 RLAALRVVN--------PDEEMMIVTNRGIIIRQAIDAISSQSRMATGVRVQKLDDDDAI 837
Query: 907 QSASLISVTEPETDL 921
+ +++ + E +L
Sbjct: 838 MAVAIVPASNGEEEL 852
>gi|427730872|ref|YP_007077109.1| DNA gyrase subunit A [Nostoc sp. PCC 7524]
gi|427366791|gb|AFY49512.1| DNA gyrase, A subunit [Nostoc sp. PCC 7524]
Length = 866
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/852 (50%), Positives = 595/852 (69%), Gaps = 31/852 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F+ NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSVALLQDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L A+IHNPE T +L++Y+ GPDFPTGG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVAVIHNPEITDLQLMQYVQGPDFPTGGQILGTAAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPDREAIIITELPYQTNKAGLIEKIAELVNEKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L LD +I ++R AP +A L + LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHLLQGLLIALSRLDAIINLIRNAPDAPSAKGELITTYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L+ R+ IL++IE EV ++K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEELQLQIADLQDILARRERILEIIETEVSQIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ L+ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHAE-GEIDERDLIANEKALILVTQQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTVEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVGSRTSRGTPIVQLLPIPREEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ +++LVMLT G IKK L FS+IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVDEFSSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRAKVEDSVI 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I C + +R L R TRG +M+LK GD++ MDI+PAA+ L ++
Sbjct: 666 VGSRQGMAIHFRCNHEQLRPLGRATRGVKSMKLKPGDELVGMDILPAAILDTLNTEEVET 725
Query: 799 HSNV---------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF- 842
GS GPW+L ++ G+GKRVP++ FR GL+ KF
Sbjct: 726 EELETEELETIEETAEVPGNGSVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFK 785
Query: 843 --SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+D+LA + +V +D ++++V+ G + R V IS+Q+R A GV + RL
Sbjct: 786 NRKTKDQLATLGIVN--------NDNEIMMVTSRGIIIRQAVNAISVQSRSATGVRVQRL 837
Query: 901 ELSGKIQSASLI 912
+ I +++
Sbjct: 838 DEDDAITGVAIV 849
>gi|428207643|ref|YP_007091996.1| DNA gyrase subunit A [Chroococcidiopsis thermalis PCC 7203]
gi|428009564|gb|AFY88127.1| DNA gyrase subunit A [Chroococcidiopsis thermalis PCC 7203]
Length = 859
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/856 (50%), Positives = 601/856 (70%), Gaps = 37/856 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KCA
Sbjct: 3 IIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCA 62
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECRL
Sbjct: 63 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIAGHGNFGSVDNDPPAAMRYTECRL 122
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+AL+E LL DI+ +TV+F+ NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPHN
Sbjct: 123 QALTENALLQDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPHN 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL+D + ALIHNPE + ++L++Y+PGPDFPTGG I+G GI +A+ TGRG IT+RG
Sbjct: 183 LGELIDGVVALIHNPEISDRQLMQYIPGPDFPTGGKILGTSGIHEAFTTGRGSITMRGVA 242
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E+E ++ + + R +II ++PYQTNK+ L+EKIAELV +K ++GI+DIRDESDR GMRI
Sbjct: 243 EIETVEQRGRPEREAIIITQLPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMRI 302
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQ++F NM+ +++ +P+ + LK+ L FL+FR +
Sbjct: 303 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNNEPQLLTLKQFLHVFLEFRVESIT 362
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L NLD +I +R A +TA L D LSE QADA
Sbjct: 363 RRTRYELRKAEERDHILQGLLIALLNLDEIIAAIRSAADTTTAKQQLIDTHGLSEAQADA 422
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E + L QI L+++L+ R+ IL++IE E+ ++K +TPR
Sbjct: 423 ILQMQLRRLTALEAEKIRQEHEDLQVQIADLKDILARRERILEIIETEITQIKQAHATPR 482
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +E A+ G+ D ID+I N++ ++ ++E+GY+KRM +TF Q+R T GKS +++ +D
Sbjct: 483 RTEIEPAE-GEFDAIDLIANEKAVILLTEQGYIKRMPLDTFEAQSRATRGKSGTRMKEDD 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ F+ C HD VL+FSDRG+VYS +AY+IP +R + G P+VQ+L + ERITSI+P
Sbjct: 542 GVDHFLTCCDHDSVLFFSDRGVVYSLKAYQIPVGSRTSRGVPIVQMLPIPKEERITSIVP 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF +++LVMLT GYIKK L F++IR G+IAI L GD+L+WVR +D + +
Sbjct: 602 VSEFTSEEYLVMLTKGGYIKKTELAAFTNIRANGLIAISLEEGDQLRWVRRARVEDSIII 661
Query: 742 ASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----HKDLERTP 795
S+ GM I +S + +R L R TRG AM+LK+GD++ MDII +A+ H + E P
Sbjct: 662 GSRFGMAIHFRTSHEQLRPLGRATRGVKAMKLKEGDELIGMDIIASAVLAASHME-EADP 720
Query: 796 EDSHSN---------------VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840
++ + GPW+L V+ +G+GKRVP+S F+ G I
Sbjct: 721 AEAEVEETEIVETETEENGEIANATQGPWVLIVTMAGYGKRVPVSQFKLYNRATKGKIAT 780
Query: 841 KFSA----EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
KF +D+LAA+ VV E DE ++L++ G + R I Q+R A GV
Sbjct: 781 KFKQNRKFKDKLAALMVV-------NEGDE-LMLITTRGIIIRQSTDAIPRQSRSATGVR 832
Query: 897 LMRLELSGKIQSASLI 912
+ RL+ I + +L+
Sbjct: 833 VQRLDEDDAIAAVALV 848
>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
Length = 869
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/858 (49%), Positives = 594/858 (69%), Gaps = 37/858 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L +EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHN E T +L++Y+ GPDFPTG I+G I +AY TGRG +T+RG
Sbjct: 187 NLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ +++ R +II E+PYQTNK+ L+EKIAELV +K ++GI+DIRDESDR GMR
Sbjct: 247 ATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQS+F NM+ +++G+P+ + LK L FLDFR + +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRIATI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + +ER HI++G+++ L +LD +I +R A +A L + LSE QAD
Sbjct: 367 NRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITNYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L R+ +L++IE EV ++K +F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEELQVQIADLQDILDRRERVLEIIETEVTQIKTQFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G +DDID+I N+++L+ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTIITHAE-GDIDDIDLIANEKVLILLTKQGYIKRMPVNTFEAQSRATRGKAGAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS R Y+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF +++LVMLT G IKK +L FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFTSEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVRRAKVEDSII 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S++GM I C D +R L R TRG +M+LK GD++ MDI+PAA+ + L+ E
Sbjct: 666 IGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPGDELVGMDILPAAILETLDTETEAE 725
Query: 799 HSNV---------------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
S+GPW+L ++ G+GKRVP+ FR GL
Sbjct: 726 IEEETIDIEETTEIEEISETTEAPNSNSTGPWVLVITMGGYGKRVPVGQFRLQNRAGQGL 785
Query: 838 IGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG 894
KF +D+LA + +V SDE++++ + G + R V IS+Q+R A G
Sbjct: 786 TATKFKNRKTKDKLATLRIVN--------SDEEIMMATNRGIIIRQTVNAISVQSRSATG 837
Query: 895 VILMRLELSGKIQSASLI 912
V + RL+ I +++
Sbjct: 838 VRVQRLDEDDAITGVAIV 855
>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
Length = 872
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/864 (49%), Positives = 598/864 (69%), Gaps = 43/864 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PFKKC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PL+ GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ + LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + A+IHNPE T +L++Y+ GPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L +LD +I ++R A TA L + LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELITTYMLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L+ R+ IL++IE E+ ++K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ ++ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHAE-GEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSSRTSRGTPIVQLLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF +++LVMLT G IKK L FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRARVEDSII 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----------- 787
+ S+ GM I C + +R L R TRG +M+LK GD++ MDI+PAA+
Sbjct: 666 IGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLNTEEPDI 725
Query: 788 ----HKDLERTPEDSH-----SNVKG-------SSGPWLLFVSESGHGKRVPLSSFRKLP 831
+D+E E + N++ S GPW+L ++ G+GKRVP+S FR
Sbjct: 726 DDIETEDIETAVETTEVLETLENLEAVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQN 785
Query: 832 LNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ 888
GL+ KF +D+LA + +V SD ++++V+ G + R V ISIQ
Sbjct: 786 RAGQGLMATKFKNRKTKDKLATLGIVN--------SDNEIMMVTNRGIIIRQAVNAISIQ 837
Query: 889 ARYARGVILMRLELSGKIQSASLI 912
+R A GV + RL+ I +++
Sbjct: 838 SRSATGVRVQRLDEDDAITGVAIV 861
>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Coleofasciculus chthonoplastes PCC 7420]
gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Coleofasciculus chthonoplastes PCC 7420]
Length = 838
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/834 (50%), Positives = 594/834 (71%), Gaps = 29/834 (3%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KCARVVGEVLGK+HPHGD AV
Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
YD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECRL++L+ LL DI+ +TV+
Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
F+ NFD SQ+EP +LPAR+P +LLNG+SGIAVGMATNIPPHNLGELVD L ALIHNPE T
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK--RMGVII 339
+EL++Y+P PDFPTGG I+G GI DAY TGRG IT+RG +VE ++ + + + +I+
Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240
Query: 340 KEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLY 399
E+PYQTNK+ L+EKIAE+V +K ++GISDIRDESDR GMR+VIELKR A P +V+N+LY
Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300
Query: 400 RLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVE 459
+ T LQS+F NM+ ++ +P+ + +K+ L+ FL+FR + RR +++L + +ER H+++
Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360
Query: 460 GIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFV 519
G+++ LDNLD VI ++R A +TA + L ++F LSE QADAIL M LRRLT LE +K
Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQFGLSEPQADAILQMQLRRLTALEAQKIQ 420
Query: 520 DESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDII 579
E + L +I L+++L++R IL++IE E +++K TPR + +++ + G+LDDID+I
Sbjct: 421 AEHEELQVRIADLQDILANRSRILEIIETEALQIKTTHDTPRRTAIQEVE-GELDDIDLI 479
Query: 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ ++ ++E+GY+KRM ++F Q R T GK+ +++ +D + F+ C HD +L+FS
Sbjct: 480 ANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAAARMKEDDGVEHFLTCCDHDSLLFFS 539
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
DRG+VYS RAY+IP +R A G P+VQ+L + E+ITS++PVSEF D +LVMLT GY
Sbjct: 540 DRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDEKITSVVPVSEFTDDVYLVMLTRKGY 599
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI--LSSCDIIR 757
IKK +L+ FS+IR G+IAI L GD+L+WVR C +D + + S GM I + D +R
Sbjct: 600 IKKTALDAFSNIRANGLIAISLGEGDQLRWVRLCRAEDSIIIGSSQGMAIHFKADHDQLR 659
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL--------ERTPEDSHSNVKGS---- 805
L R TRG AM+L+ D++ SMDI+PA + + L T +D+ V G
Sbjct: 660 PLGRATRGVKAMKLRSKDELISMDILPAQVVERLIATANSEEVETEDDTSDEVNGEEVHE 719
Query: 806 ---SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLAED 861
GPW+L V+ G GKRVP+S FR +GL+ KF +D+LAA+ VV
Sbjct: 720 TAGQGPWVLVVTTGGLGKRVPVSQFRLQNRAGMGLVTIKFRHKKDKLAALRVV------- 772
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
E DE +++V+ G + R + IS Q+R A G+ + RL+ I + +L+ ++
Sbjct: 773 NEGDE-LMMVTMRGIIIRQALDAISPQSRMATGIRVQRLDEEDAIAAVALVPLS 825
>gi|427736759|ref|YP_007056303.1| DNA gyrase subunit A [Rivularia sp. PCC 7116]
gi|427371800|gb|AFY55756.1| DNA gyrase subunit A [Rivularia sp. PCC 7116]
Length = 895
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/849 (51%), Positives = 591/849 (69%), Gaps = 42/849 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ FS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMRSPLISGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ +TV+F NFD SQ+EP++LPARLP LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLTSDALLQDIESETVDFADNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALI NPE T EL +Y+ GPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVALIQNPEITDIELTKYIHGPDFPTGGQILGTSGIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E L + + + +II E+PYQTNK+ L+EKIAELV +K +DGISDIRDESDR GMR
Sbjct: 247 ANIETLQQRGRPEKEAIIITELPYQTNKAALIEKIAELVNDKRIDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+LT LQ++F NM+ +++G+P + LK L+ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKLTPLQTNFGANMLALVNGEPILLTLKRFLEVFLDFRIEAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER HI++G+++ +LD +I ++R A TA L + LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHILQGLLIAQSHLDEIIALIRHAADAPTAKGELITNYGLSEAQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L ++L+ R+ IL++IE EV +L+ + +TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEQLQLQITDLRDILARRERILEIIETEVKQLREKHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G+LDDID+I N+++++ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTIITHKE-GELDDIDLIANEKVIILLTQQGYMKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FS+RG+VY +AY++P +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DNIEHFLTCCDHDSVLFFSERGVVYCMKAYQLPLGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVMLT GYIKK +L FS+IR G+IAI L GDEL+WVR +D V
Sbjct: 606 PVSEFSQDEYLVMLTKGGYIKKTALAAFSNIRANGLIAISLEEGDELRWVRRARAEDSVI 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRL-KDGDKMASMDIIPAAL---------- 787
+ S+ GM I C + +R L R TRG AM+L K GD++ MD++PA +
Sbjct: 666 IGSRMGMAIHFRCTHEQLRPLGRATRGVKAMKLRKGGDELVGMDVLPAHILNNIAPVSEA 725
Query: 788 ------------HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV 835
D E T E +N +SG W+L ++ G+GKRVP+ FR
Sbjct: 726 EAETEAETVETEDSDNEATVEVEDNN---NSGLWVLVITTGGYGKRVPVGQFRLQNRAGQ 782
Query: 836 GLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
GL+ KF +D+LA++ +V D ++++V+ G + R V ISIQ+R A
Sbjct: 783 GLMATKFKNLKTQDQLASLHIVS--------EDNEIMMVTSRGIIIRQAVNAISIQSRSA 834
Query: 893 RGVILMRLE 901
GV + RL+
Sbjct: 835 TGVRVQRLD 843
>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
Length = 856
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/860 (50%), Positives = 606/860 (70%), Gaps = 21/860 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 6 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTE R
Sbjct: 66 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTESR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ L+ LL DI+ +TV+F NFD SQ+EP++LPARLP LLLNG+SGIAVGMATNIPPH
Sbjct: 126 LKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N EL+ + ALIHNPE + +EL+ ++PGPDFPTGG ++G+ GI DAY TG+G IT+RG
Sbjct: 186 NPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMRGV 245
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++ +++ + R +II E+PYQTNK+ L+E+IAE+V K L+GISDIRDESDR GMR
Sbjct: 246 ATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDGMR 305
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQS+FS NM+ ++DG+P + LK L+ FLDFR +
Sbjct: 306 IVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIETI 365
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R++L + +ER H+++G+++ L NLD +I ++R + A L D + LSE Q+D
Sbjct: 366 ERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLSEVQSD 425
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I ++L+ R+ +L++IE E+ +L+ RF P
Sbjct: 426 AILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQRFQEP 485
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + L +AD G+L+ ID+I N++ +L ++++GY+KRM N F Q+RGT GK+ K + +
Sbjct: 486 RRTTLLEAD-GELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRGTRGKAGAKTKDD 544
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D++ F+ C HD++L+FSDRG+VY+ AY+IP +RNA G P+VQ+L + ERITSI+
Sbjct: 545 DSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLPIPREERITSIV 604
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVS F+ D++LVMLT GYIKK +L+ F++IR+ G+IAI L GD+L+WVR +D +
Sbjct: 605 PVSAFSDDEYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQLRWVRLAKPEDSIL 664
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I +S D +R L R TRG AM L+ GD + SMD++PA+L ++ T ++
Sbjct: 665 IGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASLTANMTETGDED 724
Query: 799 HSN----VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFV 853
++ V S GPW+L V+ G GKRVP+ FR +GL KF S +D L ++ +
Sbjct: 725 EADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQDELVSLRI 784
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
V ES +++V++SQ + R I Q+R A GV + RL+ + + +L+
Sbjct: 785 V--------ESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVP 836
Query: 914 VTEPETDLFLPSTSDKLATE 933
E E D ++ D +A++
Sbjct: 837 PGEEELD---ETSEDAIASD 853
>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
Length = 846
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/840 (51%), Positives = 592/840 (70%), Gaps = 25/840 (2%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ RI+ +L EM SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF
Sbjct: 1 MTARIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPF 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVG+V+GK+HPHGD AVY++LVRMAQDFS+R L+ GHGNFGSID DP AAMRYT
Sbjct: 61 RKCARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
ECRL A ++ LL DID +TV+F+ N+D SQ+EP +LPAR+P LLLNG+SGIAVGMATNI
Sbjct: 121 ECRLTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 180
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGELVD L ALIHNP T EL++++P PDFPTGGLIMG GI +AY TGRG IT+
Sbjct: 181 PPHNLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIREAYTTGRGSITL 240
Query: 320 RGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
RG VE ++ + + R +II E+PYQTNK+ ++EKIAELV K L+GI+DIRDESDR
Sbjct: 241 RGVATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDRE 300
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMR+VIELKR A P +V+N+LY+ T LQS+F NM+ IL+G+P+ + L++ LQAFLDFR
Sbjct: 301 GMRVVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLRDALQAFLDFRA 360
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ERR R++L + +ER H+++G ++ L LDRVI ++R A +TA A L+ LSE
Sbjct: 361 EVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQATLGLSEA 420
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QAD IL M LRRLT LE +K E + L+ QI L ++L+ R+ ++Q+I +E+ +LK+RF
Sbjct: 421 QADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKSRF 480
Query: 558 STPRLS--MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
++PR S LED +L D+I N E ++ ++E+GY+KRM F +Q R T GK+
Sbjct: 481 ASPRRSRLCLEDC---ELKVADLIENRETVIFLTEQGYIKRMDLEEFQVQGRATRGKAGA 537
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
+++ +DA+ F CR+HD +L+F+DRG+VY+ AY+IP+ +R A G+ +VQ+L ++ ER
Sbjct: 538 RIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQGSRTARGSAIVQLLPITREER 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+TS++PVSEF+ D++LVMLT GYIKK +L+ F+++R+ G+IAI L DEL+WVR +
Sbjct: 598 VTSMVPVSEFSDDEYLVMLTRAGYIKKTALSAFANVRSNGLIAISLEENDELRWVRRARS 657
Query: 736 DDLVAMASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
D V MA++ GM I D +R L R TRG A+ L GD + SMDII A ER
Sbjct: 658 SDDVVMATRQGMCIRFRADDEQLRPLGRATRGVRAITLNPGDDIVSMDIIFAESVMAAER 717
Query: 794 TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVF 852
E + PW+L +++ G GKR + FR+ G+I KF E D LAA+
Sbjct: 718 EGER-------LANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKFRQESDELAALR 770
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+V AED +++LV+ G V R + I Q+R A GV++ RL+ I +++
Sbjct: 771 IVN---AED-----EILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVV 822
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+DE L+ ++ GY+K+ + F N+++ G I S L ND + R+ D V+ +
Sbjct: 609 DDEYLVMLTRAGYIKKTALSAFANVRSNGLIAIS---LEENDELRWVRRARSSDDVVMAT 665
Query: 640 DRGIVYSARA--YKIPECTRNAAGTPLVQILSLSDGERITSI-------IPVSEFAGDQ- 689
+G+ RA ++ R G V+ ++L+ G+ I S+ + +E G++
Sbjct: 666 RQGMCIRFRADDEQLRPLGRATRG---VRAITLNPGDDIVSMDIIFAESVMAAEREGERL 722
Query: 690 ---FLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQL-VPGDELKWVRCCTNDDLVAMAS 743
+++++T G K+ +++ F G+IA + DEL +R +D + + +
Sbjct: 723 ANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKFRQESDELAALRIVNAEDEILLVT 782
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
G+V+ I + SR G + RL D + + ++PA+ +D
Sbjct: 783 ARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPASFIRD 829
>gi|414079256|ref|YP_007000680.1| DNA gyrase subunit A [Anabaena sp. 90]
gi|413972535|gb|AFW96623.1| DNA gyrase subunit A [Anabaena sp. 90]
Length = 877
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/866 (49%), Positives = 591/866 (68%), Gaps = 45/866 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIIPTDLRGEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLISGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LHALTSVALLQDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHNPE T +L++Y+ GPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVALIHNPEITDIQLMQYIHGPDFPTGAQILGVSGIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + +++ R +II E+PYQTNK+ L+EKIAELV +K ++GISDIRDESDR GMR
Sbjct: 247 ANIETITQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKRIEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQS+F NM+ +++ +P+ + LK L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSEPQTLNLKRFLSVFLDFRILSI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R++L + +ER H+++G+++ L LD +I ++R AP TA L + LSE QAD
Sbjct: 367 ERRTRYELRKAQERDHLLQGLLIALSRLDAIIVLIRHAPDAPTAKGELITTYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I L ++L+ R+ +L++IE E+ ++K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHDDLQVKITDLLDILARRERVLEIIETEISQIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G +DDID+I N++ ++ ++E+GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHGE-GDIDDIDLIANEKAIILVTEQGYIKRMPVNTFESQSRATRGKAGAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FSDRG+VY RAY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFLTCCDHDSILFFSDRGVVYCLRAYQIPVSSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ +++LVMLT G IKK L FS IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFSSEEYLVMLTKGGNIKKTVLEAFSHIRANGLIAISLEEGDQLRWVRRARVEDSII 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH---------- 788
+ S+ GM I C D +R L R TRG +M+LK+ D++ MDI+PAA+
Sbjct: 666 IGSRQGMAIHFRCTHDQLRPLGRATRGVKSMKLKNKDELIGMDILPAAILDTLATVIEGE 725
Query: 789 -------------------KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRK 829
++E + E + S+GPW+L ++ G+GKRVP+S FR
Sbjct: 726 SEESEETAEIEEIVETAEIAEIENSEEIVEVSNASSTGPWVLVITMGGYGKRVPVSQFRL 785
Query: 830 LPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
GL+ KF +D+LA + +V SDE++++ + G + R V IS
Sbjct: 786 QNRAGQGLMATKFKNRKTKDKLATLRIVN--------SDEEIMMATNRGIIIRQAVNAIS 837
Query: 887 IQARYARGVILMRLELSGKIQSASLI 912
IQ+R A GV + RL+ I +++
Sbjct: 838 IQSRSATGVRVQRLDEDDAITGVAIV 863
>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
Length = 872
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/864 (49%), Positives = 599/864 (69%), Gaps = 43/864 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PFKKC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PL+ GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ + LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + A+IHNPE T +L++Y+ GPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV +K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L +LD +I ++R A TA L + LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELITTYMLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L+ R+ IL++IE E+ ++K F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQIKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ ++ ++++GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHAE-GEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTSRGTPIVQLLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF +++LVMLT G IKK L FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRARVEDSII 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----------- 787
+ S+ GM I C + +R L R TRG +M+LK GD++ MDI+PAA+
Sbjct: 666 VGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLNTEEPDI 725
Query: 788 ----HKDLERTPEDSH-----SNVKG-------SSGPWLLFVSESGHGKRVPLSSFRKLP 831
+D+E E + N++ S GPW+L ++ G+GKRVP+S FR
Sbjct: 726 DDIETEDIETAVETTEVLETLENLEAVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQN 785
Query: 832 LNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ 888
GL+ KF +D+LA + +V SD ++++V+ G + R V ISIQ
Sbjct: 786 RAGQGLMATKFKNRKTKDKLATLGIVN--------SDNEIMMVTNRGIIIRQAVNAISIQ 837
Query: 889 ARYARGVILMRLELSGKIQSASLI 912
+R A GV + RL+ I +++
Sbjct: 838 SRSATGVRVQRLDEDDAITGVAIV 861
>gi|434403089|ref|YP_007145974.1| DNA gyrase subunit A [Cylindrospermum stagnale PCC 7417]
gi|428257344|gb|AFZ23294.1| DNA gyrase subunit A [Cylindrospermum stagnale PCC 7417]
Length = 877
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/866 (49%), Positives = 597/866 (68%), Gaps = 45/866 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ L+ A LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQGLTSAALLQDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + ALIHNPE T EL++Y+ GPDFPTG L++G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGIVALIHNPEITSLELMQYIHGPDFPTGALVLGTGAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + + +II E+PYQTNK+ L+EKIAELV +K +DGISD+RDESDR GMR
Sbjct: 247 ANIETIEQRGRPEKEAIIITELPYQTNKAALIEKIAELVNDKRIDGISDLRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LKE L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILALKEFLSVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L +LD +I ++R AP TA L + LSE QAD
Sbjct: 367 NRRTRYQLRKAEERDHLLQGLLIALSHLDAIIILIRHAPDAPTAKGELITSYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L+++L R+ +L++IE E+ +K FSTP
Sbjct: 427 AILQMQLRRLTALEADKIRLEHEELQTQIADLKDILDRRERVLEIIETEISVIKANFSTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ L+ ++E GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTIITHAE-GEIDERDLIANEKALILLTEHGYIKRMPVSTFEAQSRATRGKAGAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DNIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF +++LVMLT G IKK +L FS IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVDEFTNEEYLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVRRARVEDSVI 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-- 796
+ S++GM I C + +R L R TRG +M+LK GD++ MDI+PAA+ L E
Sbjct: 666 VGSRHGMAIHFRCNHEQLRPLGRATRGVKSMKLKKGDELVGMDILPAAVLDTLNPETEEE 725
Query: 797 ----------DSHSNVK-----------------GSSGPWLLFVSESGHGKRVPLSSFRK 829
++ + V+ G+ GPW+L ++ G+GKRVP++ FR
Sbjct: 726 LVGTLDTLNPETEAEVEDIVETEVETEEAEVPGNGNVGPWVLVITVGGYGKRVPVAQFRL 785
Query: 830 LPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
GL+ KF +D+LA + +V +DE++++V+ G + R V IS
Sbjct: 786 QKRAGQGLMATKFKNRKTKDQLATLRIVN--------NDEEIMMVTSRGIIIRQAVNAIS 837
Query: 887 IQARYARGVILMRLELSGKIQSASLI 912
Q+R A GV + RL+ + + +++
Sbjct: 838 TQSRSATGVRVQRLDEDDALTAVAIV 863
>gi|428778547|ref|YP_007170333.1| DNA gyrase subunit A [Dactylococcopsis salina PCC 8305]
gi|428692826|gb|AFZ48976.1| DNA gyrase, A subunit [Dactylococcopsis salina PCC 8305]
Length = 846
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/837 (49%), Positives = 595/837 (71%), Gaps = 16/837 (1%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P EL EM+ Y+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL++ +PF+KC
Sbjct: 7 RIIPTELRNEMSQCYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ FS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQLFSMRDPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+ DTV+F+ NFD SQ+EP +LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALSTDALLQDIESDTVDFIDNFDGSQQEPMVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD ALI NP+ T EL++Y+PGPDFPTGG I+G GI AY GRG IT+RG
Sbjct: 187 NLGELVDGAIALIQNPDLTTAELMQYIPGPDFPTGGQILGRSGIKAAYEEGRGSITMRGV 246
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E L + + +I+ E+PYQ+NK+ ++EKIAELV +K L+GISDIRDESDR+GMR
Sbjct: 247 AEIETLSQPGRQDKEAIIVTELPYQSNKAAIIEKIAELVNDKKLEGISDIRDESDRTGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL++ A P +V+N+LY+ T LQ +F NM+ +++G+P+ + LK+ L+ F++FR +
Sbjct: 307 IVIELRKDAYPRVVLNNLYKQTPLQMNFGANMLALVNGEPQHLNLKKFLEVFVEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L + +ER HI++G+++ L +++ VIRI+R A TA A L + F LSE Q D
Sbjct: 367 TRRTTYLLRKAQERDHILQGLLIALQDIEAVIRIIRSAADTPTAKANLTEHFGLSEAQTD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ +I +++L+ R+ I ++I+ E+ ++K +++TP
Sbjct: 427 AILQMQLRRLTALEAEKIQAEHEDLLAKITDYQDILARRERIEEIIQTELTQIKEKYATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ G++ D+D+I N++ ++ ++E+GY+KRM +TF QNR T GKS K++ +
Sbjct: 487 RRTIIESAE-GEIVDLDLIANEQAIILLTEQGYIKRMPVDTFGSQNRATRGKSAAKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HDH+L+FSDRG+VY+ AY+IP +R + GTPL+Q+L +S E+IT+++
Sbjct: 546 DGVEHFISCCDHDHLLFFSDRGVVYALNAYQIPIGSRTSRGTPLLQMLPISQAEKITTVL 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF + +L+MLT G IKK SL+ FS+IR+ G+IAI L D+L+WVR D +
Sbjct: 606 SVREFTEEDYLIMLTKQGNIKKTSLSAFSNIRSNGLIAISLAEEDQLRWVRLAKESDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I +S + +R L R TRG AM+LK D++ SMDI+PA + +++ +
Sbjct: 666 IGSRLGMAIHFRASHEQLRPLGRATRGVKAMKLKPNDELISMDILPAQVIAEMKEEATEE 725
Query: 799 HSNVKGSSGP---WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
++++ + W+L +++ G+GKRVP++ FR GL KF +D LAA+ VV
Sbjct: 726 DASIEEPTQEETLWILAITKGGYGKRVPITQFRLQKRAGKGLSAMKFRKQDCLAALKVV- 784
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+DE+++LV+ G + R I Q+R A GV + RL+ I + +L+
Sbjct: 785 -------HADEELMLVTNRGIIIRQGTDAIPRQSRQATGVRVQRLDQDDAIAAVALV 834
>gi|428308608|ref|YP_007119585.1| DNA gyrase subunit A [Microcoleus sp. PCC 7113]
gi|428250220|gb|AFZ16179.1| DNA gyrase subunit A [Microcoleus sp. PCC 7113]
Length = 871
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/846 (50%), Positives = 587/846 (69%), Gaps = 37/846 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP L EM SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KC
Sbjct: 7 RIVPTNLRNEMQQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRAPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ +L DI+ +TV+F+ NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LRPIATDAMLRDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + ALIHNP+ T EL+ Y+PGPDFPTGG I+G GI +A+ TGRG IT+RG
Sbjct: 187 NLGELIDGVLALIHNPDITDLELMRYIPGPDFPTGGQILGTAGIKEAFTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II E+PYQTNK+ L+EKIAE+V +K ++GISDIRDESDR GMR
Sbjct: 247 AQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q +F NM+ +++ +P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQMNFGANMLALVNNEPQLLSLKKFLSVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER HI++G+++ L NLDR+I+++R A TA A L + + LSE QAD
Sbjct: 367 TRRTQYELRKAQERDHILQGLLIALGNLDRIIQLIRHAADTPTAKAELMEVYGLSEAQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I LE++L+ R IL++IE EV +LK +TP
Sbjct: 427 AILQMQLRRLTALEAEKIQAEHEELQARIADLEDILARRSRILEIIETEVNQLKATHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R ++++ + G++DD D+I N++ ++ ++E+GY+KRM N F Q R T GK+ +++ +
Sbjct: 487 RRTIIQPME-GEIDDTDLIANEKAVILLTEQGYIKRMAVNEFGAQARATRGKAGTRMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FS+RG+ Y +AY IP +R A G P+VQ+L + E+ITSI+
Sbjct: 546 DGVEHFLTCCDHDSILFFSERGVTYCLKAYHIPSASRTARGVPIVQLLPIPREEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF ++LVMLT GYIKK +L+ FS+IR G+IAI L GD+L+WV+ T D +
Sbjct: 606 PVSEFTDHEYLVMLTRKGYIKKTALDAFSNIRANGLIAISLEEGDQLRWVQRATQTDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+ GM I + D +R L R TRG AM+L+ D++ SMDIIP + ++
Sbjct: 666 IGSRQGMAIHFKTDNDQLRPLGRATRGVKAMKLRAKDELISMDIIPGQVVAEMASAIEAT 725
Query: 792 ----------------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV 835
E E+ V GPW+L V+ G+GKRVP+S FR +
Sbjct: 726 VEEEVEDLNEVSETVNEAVSEEQELVVTAGQGPWVLVVTMGGYGKRVPVSQFRLQNRAGM 785
Query: 836 GLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG 894
G++ KF +D+LAA+ VV E DE +++ S+ G + R + IS Q+R A G
Sbjct: 786 GILATKFRLPKDKLAALRVV-------NEGDELMIITSR-GIIIRQAINAISPQSRMATG 837
Query: 895 VILMRL 900
V + RL
Sbjct: 838 VRVQRL 843
>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
Length = 841
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/833 (51%), Positives = 589/833 (70%), Gaps = 24/833 (2%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCARVVGEVLGK
Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DPAAAMRYTECRL++L+ LL
Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHNLGE++D +
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
ALIHNPE T++EL++++P PDFPTG I+G GI DAY TGRG IT+RG E+E L
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240
Query: 333 K-RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+ + +I+ ++PYQTNK+ L+E+IA++V +K +DGISDIRDESDR GMRIVIELKR A P
Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
+V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ LQ FLDFR V+ RR R++L +
Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ER HI++G+++ LDNLD VI ++R+A + A L D + LS+ QADAIL M LRRLT
Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMDGYNLSQAQADAILQMQLRRLT 420
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LE K E + L+ +I LE++L+ R+ + +IE E+ E+K + R + L D G
Sbjct: 421 ALEADKIEAEHQDLLLKITDLEDILARRERVYAIIEAELTEIKTIHQSDRRTELV-LDDG 479
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
L DID+I N++ + ++E+GY+KRM TF+ QNR T GK+ K++ +D + F+ C
Sbjct: 480 DLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQNRATRGKAATKMKEDDGVDHFLTCCD 539
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
HDHVL+F++RG+VYS AY+IP+ +R A G P +Q+L + E+IT+++ VSEF D++L
Sbjct: 540 HDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQLLPIPKDEKITAMLAVSEFTEDEYL 599
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
VMLT NGYIKK +L+ F+ IR+ G+IAI L GDEL+WVR +D + +AS GM I
Sbjct: 600 VMLTQNGYIKKTALSAFAKIRSNGLIAISLEDGDELRWVRLARQEDSIIVASSEGMAIHF 659
Query: 752 SCD--IIRSLSRNTRGSVAMRLK-DGDKMASMDIIPA--------ALHKDLERTPEDSHS 800
D +R L R+TRG AM+LK D DK+ SMDI+ + A + E E+
Sbjct: 660 QADHNQLRPLGRSTRGVRAMKLKSDDDKLVSMDIVSSQITAAIAAADTAEDEDDNEEVTE 719
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLA 859
NV GPW++ V+ G GKRVP+ FR VGL KF S DRLA++ +V
Sbjct: 720 NV--DQGPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLASLRIVN---- 773
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+++++LV+ G + R V IS+Q+R A GV + RL+ I + +L+
Sbjct: 774 ----PEDELMLVTGRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAVALV 822
>gi|332705056|ref|ZP_08425141.1| DNA gyrase subunit A [Moorea producens 3L]
gi|332356233|gb|EGJ35688.1| DNA gyrase subunit A [Moorea producens 3L]
Length = 846
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/829 (51%), Positives = 582/829 (70%), Gaps = 23/829 (2%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++GRALPD RDGLKPVHRRIL+AMHELGLS +PF+KCARVVGEVLGK+HPHGD AV
Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPERPFRKCARVVGEVLGKYHPHGDTAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
YD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECRL+A++ LL DI+ +TV+
Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQAIATNALLRDIESETVD 120
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
FV NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPHNLGELVD L A+IHNPE T
Sbjct: 121 FVDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLVAVIHNPEIT 180
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK--RMGVII 339
+EL Y+PGPDFPTG I+G GI DAY +GRG IT+RG E+E + + + + +II
Sbjct: 181 DKELRRYIPGPDFPTGAQILGTSGIKDAYTSGRGSITMRGVAEIETIGQRGRPDKEAIII 240
Query: 340 KEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLY 399
E+PYQTNK+ L+EKIAELV +K +DGISDIRDESDR+GMRIVIELKR A P +V+N+LY
Sbjct: 241 TELPYQTNKASLIEKIAELVNDKRIDGISDIRDESDRNGMRIVIELKRDAYPKVVLNNLY 300
Query: 400 RLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVE 459
+ T LQ++F NM+ ++ +P+ + +K+ L FLDFR + RR +++L + +ER H+++
Sbjct: 301 KQTPLQTNFGANMLALVGNEPQLLTIKQFLNVFLDFRIETITRRTQYQLRKAEERDHLLQ 360
Query: 460 GIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFV 519
G+++ LD+LD VI ++R A +TA L EF LSE QADAIL M LRRLT LE +K
Sbjct: 361 GLLIALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQKIQ 420
Query: 520 DESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDII 579
E + L +I L ++L+ R IL++IE E +LK F+TPR + ++ + G+LDD D+I
Sbjct: 421 AEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATPRRTQIQQVE-GELDDTDLI 479
Query: 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ ++ ++E+GY+KRM + F Q R T GK+ +++ +D + F C HD +L+FS
Sbjct: 480 ANEKAVILLTEQGYIKRMPVDEFRAQARATRGKAAARIKDDDEVEHFFTCCDHDSILFFS 539
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
DRG+VYS RAY+IP +R A G P+VQ+L + E+ITSI+PVSEF D++LVMLT GY
Sbjct: 540 DRGVVYSLRAYQIPAVSRTARGVPIVQMLPIPHEEKITSIVPVSEFTDDEYLVMLTHKGY 599
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC--DIIR 757
IKK +L+ FS IR G+IAI L GD+L+WV +D + + S++GM I C D +R
Sbjct: 600 IKKTALDAFSKIRANGLIAISLGEGDQLRWVLRAREEDSIIIGSRHGMAIHFKCDNDQLR 659
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPA------ALHKDLERTPE---DSHSNVKGSSGP 808
L R TRG AM+LK D++ MDI+ A +D E E DS + GP
Sbjct: 660 PLGRATRGVKAMKLKGDDELIGMDILSGQIIASLAAAEDSEEETEDLSDSEMVETAAQGP 719
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQ 867
W+L V+ G+GKRVP+S FR +G+ KF +D+LAA+ VV E DE
Sbjct: 720 WVLIVTMGGYGKRVPVSQFRLQNRAGMGVRSTKFRLPKDQLAALQVV-------NEGDE- 771
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++V+ G + R V IS Q+R A GV + +L+ I + +L+ +++
Sbjct: 772 LMIVTSRGIIIRQAVDAISPQSRMATGVRVQKLDDEDAIAAVALVPISD 820
>gi|428298370|ref|YP_007136676.1| DNA gyrase subunit A [Calothrix sp. PCC 6303]
gi|428234914|gb|AFZ00704.1| DNA gyrase subunit A [Calothrix sp. PCC 6303]
Length = 866
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/860 (49%), Positives = 596/860 (69%), Gaps = 35/860 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL S +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMSDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLISGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSAALLQDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L LIHNPE T EL++Y+ GPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGLVQLIHNPEMTTAELMQYIHGPDFPTGAQILGTSGIKEAYLTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ +++ R +II E+PYQTNK+ L+EKIAELV K L+GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRNRPDREAIIITELPYQTNKAALIEKIAELVNEKRLEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+LT +Q++F NM+ +++G+P+ + LK+ LQ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKLTPIQANFGANMLALVNGEPQVLELKQFLQVFLDFRVEAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L LD +I ++R++ + TA L + LSE QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALARLDSIIALIRQSADSPTAKGELITGYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L I L+++L+ R+ IL++IE EV +K +TP
Sbjct: 427 AILQMQLRRLTALEADKISHEHEALQVSIADLQDILARRERILEIIETEVTLIKTAHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ + G L+DID+I N++ ++ ++++GY+KRM NTF QNR T GK+ K++ +
Sbjct: 487 RRTIITHGE-GDLEDIDLIANEKAIILVTQQGYIKRMPVNTFESQNRATRGKAAAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS RAY+IP +R + GTP+VQ+L + E+ITS++
Sbjct: 546 DNIEHFLTCCDHDSVLFFSDRGVVYSLRAYQIPVSSRTSRGTPIVQMLPIPKEEKITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF+ +++LVMLT G IKK +L FS IR+ G+IAI L GD+L+WVR +D V
Sbjct: 606 HVDEFSSEEYLVMLTRGGNIKKTALEAFSHIRSNGLIAISLEEGDQLRWVRRAKPEDSVL 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----------- 787
+ S+ GM I C+ +R L R TRG +M+LK GD++ MDI+PAA+
Sbjct: 666 IGSRQGMAIHFRCNHSQLRPLGRATRGVKSMKLKKGDELVGMDILPAAILEKIAPVEEVE 725
Query: 788 -----HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG--- 839
+ D E+ G W+L ++ G+GKRVP++ FR GL+
Sbjct: 726 GEEIENLDEVLEVENEEVIEADPQGLWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKF 785
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
++D+LAA+ +V D+++++V+ G + R V IS+Q+R A GV + R
Sbjct: 786 KNKKSKDKLAALHIVNH--------DDEIMMVTSRGIIIRQAVNAISVQSRSATGVRVQR 837
Query: 900 LELSGKIQSASLISVTEPET 919
L+ + ++V P+T
Sbjct: 838 LDEDDALTG---VAVVPPDT 854
>gi|427717050|ref|YP_007065044.1| DNA gyrase subunit A [Calothrix sp. PCC 7507]
gi|427349486|gb|AFY32210.1| DNA gyrase subunit A [Calothrix sp. PCC 7507]
Length = 863
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/853 (49%), Positives = 595/853 (69%), Gaps = 31/853 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ A LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTSASLLHDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D + ALIHNPE T +L++Y+ GPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDGVVALIHNPEITDLQLMQYIHGPDFPTGAQILGTAPIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV +K ++GI+DIRDESDR GMR
Sbjct: 247 ANIETIEQRGRPEREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + +K+ L+ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTIKQFLEVFLDFRIESI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ L +LD +I ++R A TA L + LSE QAD
Sbjct: 367 NRRTRYELRKAQERDHLLQGLLIALSHLDAIINLIRHASDAPTAKGELITTYGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L QI L ++L+ R+ +L++IE E+ +LK F+TP
Sbjct: 427 AILQMQLRRLTALEADKIRIEHEDLQTQIADLLDILARRERVLEIIETEITQLKTSFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ A+ G++D+ D+I N++ L+ I+++GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTVITHAE-GEIDERDLIANEKALILITQQGYIKRMPVSTFEAQSRATRGKAGAKVKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY +AY+IP +R + GTP+VQ+L + E+ITSI+
Sbjct: 546 DNIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVGSRTSRGTPIVQMLPIPKEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ +++LVMLT G IKK L FS+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 PVDEFSSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQLRWVRRARVEDSIL 665
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT---- 794
+ S+ GM I C + +R LSR TRG AM+LK D++ MDI+PAA+ L
Sbjct: 666 IGSRQGMAIHFRCTHEQLRPLSRATRGVKAMKLKAKDELVGMDILPAAILDTLSSVTEGE 725
Query: 795 ----------PEDSHSNVKGSS--GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
+ + V G++ GPW+L ++ G+GKRVP+ FR GL+ KF
Sbjct: 726 IEEIETEEIENNEETTEVAGTNSIGPWVLVITNGGYGKRVPVGQFRLQNRAGQGLMATKF 785
Query: 843 ---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+D+LA + +V D+++++V+ G + R V ISIQ+R A GV + R
Sbjct: 786 KNRKTKDQLATLRIV-------NNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQR 838
Query: 900 LELSGKIQSASLI 912
L+ I +++
Sbjct: 839 LDEDDAITGVAIV 851
>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
Length = 859
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/844 (51%), Positives = 601/844 (71%), Gaps = 23/844 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+ DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNPE T +EL++ +PGPDFPTGG I+G GI DAY +GRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E ++ + + R +II ++PYQTNK+ L+E+IA+LV +K +DGISDIRDESDR GMR
Sbjct: 247 AEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N++Y+ T +Q +F NM+ +++G+P+ + +K+ LQ FL+FR +
Sbjct: 307 VVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD VI+++R A +TA L ++F LS QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQFGLSPVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L+++L+ R+ I +IE+E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEEELAQIKTIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM +TF Q R T GK+ K++ +
Sbjct: 487 RRTEIVH-DDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQRATRGKAAAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY+ AY+I +R A G P+VQ+L + E+ITSI+
Sbjct: 546 DVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIQAASRTARGIPIVQMLPIPKDEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF+ D FLVMLT NGYIKK +L+ FS+IRT G+IAI L GD+L+WVR +D +
Sbjct: 606 AVSEFSDDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQLRWVRLTREEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + NGM I D +R L R TRG AM+LK GD++ SMDI+ A + + T ED
Sbjct: 666 LGTSNGMSIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDILTAQVTAGMAYTEEDE 725
Query: 799 H---------SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRL 848
+ + ++GPW+L ++ G+GKRVP+S FR +G+ KF ++ D L
Sbjct: 726 EILDNENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKFKSDSDCL 785
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
A++ VV AED ++++VS G + R V IS+Q+R A GV + RL+ I +
Sbjct: 786 ASLRVVN---AED-----ELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAA 837
Query: 909 ASLI 912
+L+
Sbjct: 838 VALV 841
>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 842
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/849 (50%), Positives = 594/849 (69%), Gaps = 28/849 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+
Sbjct: 7 TARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFR 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
KCARVVG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ GHGNFGS+D DP AAMRYTE
Sbjct: 67 KCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
CRL A ++ LL DID +TV+FV N+D SQ+EP +LPAR+P LLLNG+SGIAVGMATNIP
Sbjct: 127 CRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 186
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL ELVD L ALIHNP T EL++++P PDFPTG LIMG GI +AY TGR IT+R
Sbjct: 187 PHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRSSITLR 246
Query: 321 GKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
G VE ++ + + R +II E+PYQTNK+ ++EKIAELV K L+GI+DIRDESDRSG
Sbjct: 247 GVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDRSG 306
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VIELKR A P +V+N+LY+ T LQ++F NM+ IL+G+P+ + L++ LQAFLDFR
Sbjct: 307 MRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFLDFREE 366
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ERR R++L + +ER H+++G ++ L LDRVI ++R A +TA L+ LSE Q
Sbjct: 367 VIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREELQAVLGLSEAQ 426
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
AD IL M LRRLT LE +K E + L+ QI L ++L+ R+ ++Q+I +E+ +LK RF+
Sbjct: 427 ADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKARFA 486
Query: 559 TPRLS--MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
+PR S LED G+L D+I N E ++ ++E+GY+KRM F +Q R T GK+ +
Sbjct: 487 SPRRSRLCLED---GELGTDDLIENRETVIFLTEQGYIKRMGLEEFQVQGRATRGKAGAR 543
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
++ +DA+ F CR+HD +L+F++RG+VY+ A++IP+ +R A G+ +VQ+L ++ ER+
Sbjct: 544 IKEDDAIEQFFACRSHDTILFFTNRGVVYTLPAHQIPQGSRAARGSAIVQLLPITREERV 603
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
TS++PVS+F+ D++LVMLT GYIKK +L+ F+++R+ G+IAI L DEL+WVR +
Sbjct: 604 TSMVPVSQFSDDEYLVMLTRGGYIKKTALSAFANVRSNGLIAISLEENDELRWVRRARSS 663
Query: 737 DLVAMASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
D V MA++ GM I D +R L R TRG A+ L GD + SMDII A ER
Sbjct: 664 DDVVMATRQGMSIRFPADDEQLRPLGRATRGVRAITLNAGDDIVSMDIISAESVMAAERE 723
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFV 853
E + PW+L +++ G GKR + +FR+ G+I KF A D LAA+ +
Sbjct: 724 GEK-------LANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKFRQASDELAALRI 776
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
V AED +++LV+ G V R + I Q+R A GV++ RL+ I +++
Sbjct: 777 VN---AED-----EILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVP 828
Query: 914 ---VTEPET 919
V E ET
Sbjct: 829 AALVAEEET 837
>gi|428777022|ref|YP_007168809.1| DNA gyrase subunit A [Halothece sp. PCC 7418]
gi|428691301|gb|AFZ44595.1| DNA gyrase subunit A [Halothece sp. PCC 7418]
Length = 848
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/825 (50%), Positives = 588/825 (71%), Gaps = 16/825 (1%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P EL EM+ Y+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL++ +PF+KC
Sbjct: 7 RIIPTELRNEMSQCYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVY++LVRMAQ FS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYEALVRMAQLFSMRDPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+ DTV+F+ NFD SQ+EP +LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALSTDALLQDIESDTVDFIDNFDGSQQEPMVLPSRVPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD ALIHNPE T EL++Y+PGPDFPTGG I+G GI AY GRG IT+RG
Sbjct: 187 NLGELVDGAIALIHNPELTTTELMQYIPGPDFPTGGQILGRSGIKSAYAEGRGSITMRGV 246
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E L + + +I+ E+PYQ+NK+ ++EKIAELV +K ++GISDIRDESDR+GMR
Sbjct: 247 AEIETLSQAGRQDKEAIIVTELPYQSNKAAIIEKIAELVNDKKIEGISDIRDESDRTGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A P +V+N+LY+ T LQ +F NM+ +++G+P+ + LK+ L+ F++FR +
Sbjct: 307 IVIELRRDAYPRVVLNNLYKQTPLQMNFGANMLALVNGEPQHLNLKKFLEVFIEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R+ L + +ER H+++G+++ L +++ VIRI+R A TA A+L + F LSE Q D
Sbjct: 367 TRRTRYLLQKAQERDHLLQGLLIALQDIEAVIRIIRGAADTPTAKASLVEHFGLSEVQTD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ +I +++L+ R+ I ++I+ E+ ++K +++TP
Sbjct: 427 AILQMQLRRLTALEAEKIEAEHQDLLAKISDYQDILARRERIEEIIQTELTQIKEKYATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ G++ D+D+I N++ ++ ++E+GY+KRM NTF QNR T GKS K++ +
Sbjct: 487 RRTIIESAE-GEIVDLDLIANEQAIILVTEQGYIKRMPVNTFGSQNRATRGKSATKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HDH+L+FSDRG+VY+ AY++P +R A GTPL+Q+L +S E+IT+++
Sbjct: 546 DEIEHFISCCDHDHLLFFSDRGVVYALSAYQVPIGSRTARGTPLLQMLPISQEEKITTVL 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF + +L+MLT G IKK SL+ FS+IRT G+IAI L D+L+WVR D +
Sbjct: 606 AVREFTEEDYLIMLTRQGNIKKTSLSAFSNIRTNGLIAISLADEDQLRWVRLAKESDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I +S + +R L R TRG AM+LK D++ SMDI+PA + +++ +
Sbjct: 666 IGSRKGMAIHFRASHEQLRPLGRATRGVKAMKLKPDDELISMDILPAQVIAEMKEENSEE 725
Query: 799 HSNVKGSSGP---WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ + P W+L +++ G+GKRVP++ FR GL KF +D LAA+ VV
Sbjct: 726 EEATQEFTQPETLWILAITKGGYGKRVPITQFRLQNRAGKGLSAMKFRKQDCLAALKVV- 784
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E+++LV+ G + R I Q+R A GV + RL
Sbjct: 785 -------HEGEELMLVTNRGIIIRQGSDAIPRQSRQATGVRVQRL 822
>gi|427726037|ref|YP_007073314.1| DNA gyrase subunit A [Leptolyngbya sp. PCC 7376]
gi|427357757|gb|AFY40480.1| DNA gyrase subunit A [Leptolyngbya sp. PCC 7376]
Length = 871
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/841 (50%), Positives = 587/841 (69%), Gaps = 20/841 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTE R
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTESR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ +TV+F NFD SQ+EP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LQSLTTNALLRDIESETVDFADNFDGSQQEPVVLPARVPQLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALIHNPE T+QEL++++P PDFPTG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGEIIDGATALIHNPEITIQELMQFIPAPDFPTGAQILGRSGIKDAYLTGRGSITMRGV 246
Query: 323 TEVELLDSKSK-RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
EVE+L + + +I+ E+PYQTNK+ L+E+IA++V +K LDGISDIRDESDR GMRI
Sbjct: 247 AEVEMLRQNGREKEAIIVTELPYQTNKAGLIERIADMVNDKRLDGISDIRDESDRQGMRI 306
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR V+
Sbjct: 307 VIELKRDAYAQVVLNNLYKHTPLQNNFGANMLALVNGEPQLLNLKQFLTVFLDFRVEVIT 366
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +++L + +ER HI++G+++ L NLD VI ++R A ++TA L + ++LS+ QADA
Sbjct: 367 RRTQYELRKARERDHILQGLLIALSNLDAVIALIRRAADSATARTELMEGYELSQPQADA 426
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE K E + L +I LE++L+ R+ + +IE E+ E+K + R
Sbjct: 427 ILQMQLRRLTALEADKIQAEHEDLQLKITDLEDILARRERVDAIIEDELTEIKTIHQSDR 486
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + D+G L DID+I N+ + ++E+GY+KRM TF+ QNR T GK+ K++ +D
Sbjct: 487 RTEIV-FDAGDLQDIDLIANERSAILLTEQGYIKRMPVATFDAQNRATRGKAAAKMKEDD 545
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ F+ C HDHVL+F+DRG+VYS AY+IPE +R A G P +Q+L + E+ITS+I
Sbjct: 546 GIDHFLTCCDHDHVLFFTDRGVVYSLHAYQIPESSRTARGLPAIQLLPIPKEEKITSMIR 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF D++LVMLT NGYIKK +L+ F+ IR+ G+IAI L GD+L WVR +D + +
Sbjct: 606 VSEFTEDEYLVMLTQNGYIKKTTLSAFARIRSNGLIAISLEDGDQLNWVRLARQEDSIIV 665
Query: 742 ASQNGMVILSSCD--IIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDS 798
AS GM I D +R L R+TRG AM+LK D D + SMDI+ A + + + E
Sbjct: 666 ASSEGMAIHFQADSKQLRPLGRSTRGVRAMKLKSDDDMLVSMDIVSAQITAAIAASDEAE 725
Query: 799 HSNVKG------SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+GPW++ V+ G GKRV + FR VGL KF ++ DRLA++
Sbjct: 726 EDEDNEDILEDVDNGPWVVAVTTKGFGKRVQVGRFRLQNRAGVGLRAIKFKSKGDRLASL 785
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+V S +++LV+ G + R V IS+Q+R A GV + RL+ I + +L
Sbjct: 786 RIV--------HSGNELMLVTSRGIMIRQAVESISLQSRNATGVRVQRLDKEDAIVAVAL 837
Query: 912 I 912
+
Sbjct: 838 V 838
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 582 DEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
DE L+ +++ GY+K+ + F +++ G I S L D ++ + R D ++ S
Sbjct: 612 DEYLVMLTQNGYIKKTTLSAFARIRSNGLIAIS---LEDGDQLNWVRLARQEDSIIVASS 668
Query: 641 RG--IVYSARAYKIPECTRNAAGTPLVQILSLSD--------GERITSIIPVSEFAGDQ- 689
G I + A + ++ R+ G +++ S D +IT+ I S+ A +
Sbjct: 669 EGMAIHFQADSKQLRPLGRSTRGVRAMKLKSDDDMLVSMDIVSAQITAAIAASDEAEEDE 728
Query: 690 -------------FLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQL-VPGDELKWVRCC 733
++V +T G+ K+V + F + G+ AI+ GD L +R
Sbjct: 729 DNEDILEDVDNGPWVVAVTTKGFGKRVQVGRFRLQNRAGVGLRAIKFKSKGDRLASLRIV 788
Query: 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
+ + + + + G++I + + I SRN G RL D + ++ ++P A +D+E
Sbjct: 789 HSGNELMLVTSRGIMIRQAVESISLQSRNATGVRVQRLDKEDAIVAVALVPEAADEDVED 848
Query: 794 TPEDSHSNVKGSS 806
T +D H+ + G S
Sbjct: 849 T-QDEHT-IDGDS 859
>gi|428769194|ref|YP_007160984.1| DNA gyrase subunit A [Cyanobacterium aponinum PCC 10605]
gi|428683473|gb|AFZ52940.1| DNA gyrase subunit A [Cyanobacterium aponinum PCC 10605]
Length = 852
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/855 (49%), Positives = 599/855 (70%), Gaps = 26/855 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL++ +PF+KC
Sbjct: 7 RIVPTNLTNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F+ NFD SQ+EP +LPAR+P LLLNGA+GIAVGMATNIPPH
Sbjct: 127 LQALAVEGLLRDIESETVDFIDNFDGSQQEPVVLPARVPQLLLNGATGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ A+IHNP+ T EL+EY+PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGELINGAIAMIHNPDITDLELMEYIPGPDFPTGGQILGRQGIKDAYTTGRGSITMRGV 246
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + + + ++ +I+ E+PYQTNK+ L+EKIAELV +K +DGISDIRDESDR+GMR
Sbjct: 247 ANIETVRAAGRQEKEAIIVTELPYQTNKAGLIEKIAELVNDKRIDGISDIRDESDRTGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ TA+QS+F NM+ +++ +P+ + + + L+ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTAIQSNFGANMLALVNNEPQLLTISQFLRVFLDFRVEAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ LDNLD VIR++R A ++TA L ++F LSE QAD
Sbjct: 367 TRRTRYQLRKAEERDHLLQGLLIALDNLDAVIRLIRGAADSATAKQELVNDFSLSETQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ QI +++L+ ++ I +IE E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIEAEHQDLLTQITDFQDILARKERIYNIIESELEDIKKVHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + AD G L DID+I N+++ + ++ +GY+K+M NTF QNR T GKS K++ +
Sbjct: 487 RRTEIVQAD-GDLGDIDLIANEQVAIILTNQGYLKKMLVNTFEAQNRATRGKSGAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ HD +L+FSD+G+VY AY++P +RNA G P+VQ+L ++ E+ITS+I
Sbjct: 546 DVVEHFLTGCDHDRILFFSDKGVVYGLNAYQLPALSRNARGVPIVQMLPIASDEKITSMI 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF ++LVMLT G IKK +L+ F++IR+ G+IAI L GDEL+WVR T DD +
Sbjct: 606 AVSEFTDHEYLVMLTQKGLIKKTALSAFANIRSNGLIAISLGEGDELRWVRLATEDDSIL 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I D +R LSR +G +M+L+ GD++ SMDI+P+ + + +
Sbjct: 666 IGSRQGMAIHFHADNEQLRPLSRTAKGVKSMKLRKGDEIISMDILPSQVTATIAEADDQE 725
Query: 799 HSNV----------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DR 847
+ G PW L V+ SG GKRVP+S FR +GL +F + D
Sbjct: 726 DDTLELEEEELTSDTGKEAPWALAVTTSGFGKRVPVSQFRLQRRAGMGLKAIRFRKKSDA 785
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
LAA+ +V +++ ++++ G + R V +S+Q+R A GV + +L+ I
Sbjct: 786 LAALRIVN--------PEDEFMIITTRGIIIRCDVNAVSLQSRQASGVRVQKLDSEDAIA 837
Query: 908 SASLI--SVTEPETD 920
+ +L+ S E E +
Sbjct: 838 AIALVPPSAEEEENE 852
>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
Length = 862
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/843 (51%), Positives = 595/843 (70%), Gaps = 23/843 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ALS LL DI+ DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNPE + +EL++ +PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II ++PYQTNK+ L+E+IA+LV K +DGISDIRDESDR GMR
Sbjct: 247 AQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N++Y+ T +Q +F NM+ +++G+P+ + +KE L FLDFR +
Sbjct: 307 VVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD VI+++R A S+A L EF LS QAD
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFGLSPVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L+++L+ R+ I +IE+E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIHAEHEELQLKIADLQDILARRERIEAIIEEELTQIKTIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM +TF Q R T GK+ K++ +
Sbjct: 487 RRTEIVH-DDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQRATRGKAAAKIKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY+ AY+IP +R A G P+VQ+L + E+ITSI+
Sbjct: 546 DVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQMLPIPKDEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D FLVMLT GYIKK +L+ FS+IRT G+IAI L GD+L+WVR +D +
Sbjct: 606 AVSEFTEDVFLVMLTHKGYIKKTALSAFSNIRTNGLIAISLGEGDQLRWVRLTREEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I D +R L R TRG AM+LK GD++ SMD++PA + + ED
Sbjct: 666 LGTRKGMAIHFHADNQQLRPLGRATRGVKAMKLKKGDELISMDVLPAQVTAGIADAAEDE 725
Query: 799 H---------SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRL 848
S + ++GPW+L ++ G+GKRVP+S FR +G+ KF S D L
Sbjct: 726 DVLDNETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFKSKTDCL 785
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
A++ VV AED ++++VS G + R V IS+Q+R A GV + RL+ I +
Sbjct: 786 ASLHVVN---AED-----ELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAA 837
Query: 909 ASL 911
+L
Sbjct: 838 VAL 840
>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
Length = 884
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/849 (50%), Positives = 587/849 (69%), Gaps = 26/849 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EEM SY+ Y+MSV++GRALPD RDG KPVHRRIL+AMHELGL +PF+KC
Sbjct: 7 RIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ FS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
LE+L+ +L DID +TVNF NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD L A+I+NPE T EL++Y+PGPDFPTG I+G GI +AY TG+G IT+RG
Sbjct: 187 NLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E L + + R +II ++PYQTNK+ L+EKIAE+V +K ++GISDIRDESDR GMR
Sbjct: 247 AQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+ T LQS+F NM+ +++ +P+++ L L+ FL+FR +
Sbjct: 307 IVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + +ER H+++G+++ LDNLD +I ++R A TA L + F+LSE QAD
Sbjct: 367 RRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIERFELSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L I L+++L+ R+ IL +IE E IELK R +P
Sbjct: 427 AILQMQLRRLTALEAHKIQAEHEELQNIIADLQDILARRERILDIIESEAIELKERHGSP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E + G+L+D D+I N++ ++ ++E+GY+KRM NTF+ QNR T GKS K++ +
Sbjct: 487 RRTEIEHTE-GELEDTDLIANEKAIILVTEQGYIKRMPVNTFDAQNRATRGKSGAKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FSDRG+VY +AY+IP +R A G P+VQ+L + ERITS++
Sbjct: 546 DGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIPVASRTARGVPIVQMLPIPKQERITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVMLT GYIKK L+ FS+IR G+IAI L GDEL+WVR DD +
Sbjct: 606 PVSEFSDDEYLVMLTKGGYIKKTELSAFSNIRANGLIAISLGEGDELRWVRLAKADDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I D +R L R TRG +M+L D++ SMDI+P+A+ + + E
Sbjct: 666 IGSRLGMAIHFRTDHKQLRPLGRATRGVKSMKLGKKDELISMDILPSAIVSSIAQL-ESE 724
Query: 799 HSNV---------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843
+++ + + ++ ++ G+GKRVP+S FR G+I KF
Sbjct: 725 ETDIEDEEVLETETEETTVENNQELAIMVITAGGYGKRVPVSQFRLQNRAGKGIIATKF- 783
Query: 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
+ L VVG + + D +++L++ G + R V I Q+R A GV + RL+
Sbjct: 784 -KQHLTTDEVVGLQVVNE---DNELMLITSRGIIIRQAVNAIPTQSRSATGVRVQRLDDE 839
Query: 904 GKIQSASLI 912
I + +++
Sbjct: 840 DAIAAVAIV 848
>gi|434397795|ref|YP_007131799.1| DNA gyrase subunit A [Stanieria cyanosphaera PCC 7437]
gi|428268892|gb|AFZ34833.1| DNA gyrase subunit A [Stanieria cyanosphaera PCC 7437]
Length = 853
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/835 (50%), Positives = 594/835 (71%), Gaps = 25/835 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRILFAM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ DTV+F NFD SQ+EP +LPARLP LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLATNALLRDIEADTVDFADNFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD + ALIHNPE + EL++Y+PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGELVDGVIALIHNPEISDLELMKYIPGPDFPTGGQILGRGGIKDAYLTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E + + + R +I+ ++PYQTNK+ L+EKIAELV +K L+GISDIRDESDR+GMR
Sbjct: 247 AEIETIHPRGRPEREAIIVTQLPYQTNKAALIEKIAELVNDKRLEGISDIRDESDRTGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NM+ I+ G+P+ + +K L+ FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQANFGANMLAIVGGEPQLITIKRFLEVFLDFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G++V L+++D+VI+++R A +TA L + LSE QAD
Sbjct: 367 TRRTQYQLRKAEERDHLLQGLLVALESIDQVIQLIRHAADTATAKGELIERLNLSETQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L++QI+ ++L+ ++ I +IE+EV ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIQAEHEDLLKQIIDFRDILAKKERIEAIIEEEVTQIKEIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + G+L D D+I N++ ++ ++E+GY+KRM +TF QNR T GK+ K++ +
Sbjct: 487 RRTEIIQGE-GELLDTDLIANEQAIIILTEQGYIKRMPVSTFEAQNRATRGKAAAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS AY+IP +R A G P+VQ+L +S E+ITSI+
Sbjct: 546 DVIEHFLTCCDHDTVLFFSDRGVVYSISAYQIPAASRTARGVPIVQMLPISQEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF +++L+MLT G IKK +L+ FS+IR G+IAI L GDEL+WVR +D V
Sbjct: 606 SVSEFTDNEYLIMLTQKGNIKKTALSAFSNIRANGLIAISLEEGDELRWVRLARTEDSVI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT---- 794
+ ++ GM I D +R L R T+G +M+LK D++ SMDI+P+ + +
Sbjct: 666 IGTRKGMAIHFKADNQQLRPLGRATKGVKSMKLKSEDELISMDILPSQIVATIASNGEEE 725
Query: 795 -------PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAED 846
E+ +GPWLL ++ +G+GKRVP++ FR +G+ KF +A D
Sbjct: 726 EEETDTEAEEIIIEEANPTGPWLLAITNNGYGKRVPVTKFRLQNRAGMGVRAIKFKNAND 785
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+LAA+ VV ++++++++ G + R V IS+Q+R A GV + +L+
Sbjct: 786 KLAAIHVVN--------PEDELMIITNRGIIIRQAVDAISLQSRNATGVRVQKLD 832
>gi|428224171|ref|YP_007108268.1| DNA gyrase subunit A [Geitlerinema sp. PCC 7407]
gi|427984072|gb|AFY65216.1| DNA gyrase subunit A [Geitlerinema sp. PCC 7407]
Length = 849
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/828 (51%), Positives = 590/828 (71%), Gaps = 18/828 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL++ +PF+KC
Sbjct: 7 RIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRAPLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LHALTTESLLRDIESETVDFGDNFDGSQQEPLVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNPE T L+ Y+PGPDFPTGG I+G GI DAY +GRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPELTDTGLMRYIPGPDFPTGGQILGASGIRDAYTSGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAELV K L+GI+DIRDESDR GMR
Sbjct: 247 AAIETVEQRGRPDRDAIIITELPYQTNKAALIEKIAELVNEKRLEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F N + +++G+P+ + LK L+ FL+FR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQNNFGVNTLALVNGEPQLLTLKRSLEVFLEFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L NLD +I ++R A +A L D + LSE Q+D
Sbjct: 367 TRRTQYELRKAQERDHLLQGLLIALGNLDAIIHLIRHAADTPSARQDLMDSYGLSESQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L QIL L+++L+ R+ IL++IE E+ ++++F+TP
Sbjct: 427 AILQMQLRRLTALEAEKIQREHEDLEAQILDLQDILARRERILEIIEIELKAIRDKFATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E + G L DID+I N+++L+ ++E+GY+KRM NTF Q+R T GK+ +++ +
Sbjct: 487 RRTTIETIE-GDLGDIDLIANEQVLILVTEQGYIKRMPINTFEAQSRATRGKAGARMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D ++ F+ C HD +L+FSDRG+ Y R+Y+IP +RNA G P+VQ+L + E+ITS++
Sbjct: 546 DVIAHFLTCCDHDSLLFFSDRGVAYCLRSYQIPTGSRNARGVPIVQMLPIPHDEKITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D++LVMLT GYIKK +L FS+IR G+IAI L GD+L+WVR +D V
Sbjct: 606 PVSEFSADEYLVMLTKGGYIKKTALAAFSNIRANGLIAISLEDGDQLRWVRRARAEDSVM 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPA----ALHKDLERT 794
+ S+ GMVI D +R L R TRG AM L+ GD++ SMDI+PA A+ + +
Sbjct: 666 IGSRKGMVIHFKTDHEQLRPLGRPTRGVKAMSLRSGDELISMDILPAQVVNAMEANSDLE 725
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFV 853
E + GPW+L ++ G+GKRVP+ FR +GL+ KF A+D+LA + V
Sbjct: 726 DESELAEPTQIQGPWVLVITTGGYGKRVPVGQFRLQNRAGMGLVASKFRKADDQLADLRV 785
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
VG ++++++ G + R IS Q+R A GV + RL+
Sbjct: 786 VG--------EGAELMMITSRGIIIRQVTDAISCQSRMATGVRVQRLD 825
>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
Length = 830
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/828 (50%), Positives = 585/828 (70%), Gaps = 26/828 (3%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KCARVVGEVLGK+HPHGD AV
Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
YD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL+AL+ + LL DI+ +TV+
Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
F+ NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPHNLGEL+D L ALIHNPE T
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK--RMGVII 339
+L++Y+ GPDFPTG I+G I +AY TGRG IT+RG +E + +++ R +II
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240
Query: 340 KEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLY 399
E+PYQTNK+ L+EKIAELV +K +DGI+DIRDESDR GMRIVIELKR + P +V+N+LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300
Query: 400 RLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVE 459
+ T LQ++F NM+ +++G+P+ + LK L FLDFR + RR R++L + +ER H+++
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360
Query: 460 GIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFV 519
G+++ L +LD +I ++R AP TA L + + LSE QADAIL M LRRLT LE K
Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELINSYGLSEVQADAILQMQLRRLTALEADKIR 420
Query: 520 DESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDII 579
E + L QI L ++L R+ +L++IE E ++K +F+TPR + + A+ G++DDID+I
Sbjct: 421 LEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFTTPRRTTITHAE-GEIDDIDLI 479
Query: 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N+++L+ ++++GY+KRM +TF QNR T GK+ K++ +D + F+ C HD VL+FS
Sbjct: 480 ANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAGAKVKEDDTIEHFLTCCDHDSVLFFS 539
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
DRG+VYS +AY+IPE +R + GTP+VQ+L + E+ITSI+ VSEF+ +++LVMLT G
Sbjct: 540 DRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEYLVMLTKGGN 599
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC--DIIR 757
IKK +L FS+IR G+IAI L GD+L+WVR +D V + S+ GM I C D +R
Sbjct: 600 IKKTALEAFSNIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIHFRCDNDQMR 659
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE-------RTPEDSHSNVKGSS---G 807
L R TRG +M+LK GD++ MDI+PAA+ L E++ N++ +S G
Sbjct: 660 PLGRATRGVKSMKLKTGDELIGMDILPAAILNTLNTEMEEELTEVEETSDNIEETSNILG 719
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGES 864
PW+L ++ G+GKRVP+ FR GL KF +D+LA + +V
Sbjct: 720 PWVLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVN--------P 771
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DE++++ + G + R + ISIQ+R A GV + +L+ I +++
Sbjct: 772 DEEIMMATNRGIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVV 819
>gi|427711599|ref|YP_007060223.1| DNA gyrase subunit A [Synechococcus sp. PCC 6312]
gi|427375728|gb|AFY59680.1| DNA gyrase subunit A [Synechococcus sp. PCC 6312]
Length = 858
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/843 (50%), Positives = 590/843 (69%), Gaps = 22/843 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P EL EE++ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGLS+ +PF+KC
Sbjct: 11 RIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLSADRPFRKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R+PLI GHGNFGSID DP AAMRYTECR
Sbjct: 71 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTECR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+Q+TV+F NFD SQ+EP ++PAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 131 LQALTSDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGMATNIPPH 190
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NPE T QEL++Y+PGPDFPTG I+G GI DAY TGRG +T+R
Sbjct: 191 NLGEIIDGVTALIANPEITDQELMQYIPGPDFPTGAQILGRAGIRDAYLTGRGSVTMRAV 250
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E L++ + R +II E+PYQTNK+ L+EKIAELV +K L+GISDIRDESDR G+R
Sbjct: 251 ANIETLENPGRPAREAIIITELPYQTNKAALMEKIAELVNDKKLEGISDIRDESDRDGLR 310
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N+L++ T LQ +F NM+ +++G P+ + LK L+ FL+FR +
Sbjct: 311 MVIELKRDAYPRVVLNNLFKQTPLQMNFGANMLALVNGNPQLLTLKRFLEVFLEFREEAI 370
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R L + +ER H+++G+++ L+NLD VI ++R + A L + LSE QAD
Sbjct: 371 ARRTRHNLRKAEERDHLLQGLLIALENLDAVIHLIRGSGDTGLARQELMQVYGLSEPQAD 430
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L QI L+++L R+ +L +I E+ ++K ++++P
Sbjct: 431 AILQMQLRRLTALEAEKIEREHEDLQAQIADLQDILQRRERVLDIIATEIAQIKTKYASP 490
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R S++ D G+L D+I N++ ++ ++++GY+KRM +TF Q+R G+ +++ +
Sbjct: 491 RRSIIIQ-DDGELLTKDLIANEKSVILVTQQGYIKRMPVDTFESQSRDGRGRKGAQIKED 549
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F C HD +L+FSDRG+VY AY+IP +RNA GTPLVQ+L + E+ITS+I
Sbjct: 550 DGVEHFFGCNDHDQILFFSDRGVVYGLPAYQIPIGSRNARGTPLVQMLPIPREEKITSVI 609
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF D++LVMLT GYIKK +L FS+IR+ G+IAI L GD+L+WVR D +
Sbjct: 610 AVQEFTEDEYLVMLTTKGYIKKTALAAFSNIRSNGLIAISLEEGDQLRWVRRAKVSDSII 669
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE-----R 793
+ S+ GM I +S + +R L R TRG +M L+ GD++ MDIIPA +
Sbjct: 670 IGSRAGMAIHFRASHEQLRPLGRATRGVKSMALRAGDELVGMDIIPAEIVNTFADQAEGE 729
Query: 794 TPEDSHSN-VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE---DRLA 849
+PE + V GPW+L V+ +G GKRVP++ FR +GL+ KF ++ D+LA
Sbjct: 730 SPETEDTEAVTSYPGPWVLVVTTNGFGKRVPVNQFRLQNRAGLGLMATKFKSKTTADQLA 789
Query: 850 AVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSA 909
A+ VV D+++++V+ G + R V IS Q+R A GV L RL+ I +A
Sbjct: 790 ALRVVNL--------DDELMIVTSRGIIIRQAVNVISSQSRLATGVRLQRLDEDDVIVTA 841
Query: 910 SLI 912
+++
Sbjct: 842 AIV 844
>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
Length = 853
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/845 (49%), Positives = 593/845 (70%), Gaps = 25/845 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRILFAM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI GHGNFGSID DP AAMRYTE R
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTESR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ LS LL DI+ +TV+F+ NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD A+IHNPE T EL++Y+PGPDFPTG I+G GI DAY GRG IT+RG
Sbjct: 187 NLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + + + R +I+ E+PYQTNK+ L+EKIAELV +K +DGI+DIRDESDR GMR
Sbjct: 247 AQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NM+ +++G+P+ + LK+ L+ FLDFR V+
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRVEVI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + +ER H+++G++V L NLD +I+++R A +TA L D+F LSE QAD
Sbjct: 367 TRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQFGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+++I L ++L R+ + +IE+E+ +LK +TP
Sbjct: 427 AILQMQLRRLTALESEKIQAEHEELLQKITDLRDILERRERVDHIIEEELNQLKTTHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G+L D+D+I N++ ++ ++E+GY+KRM +TF Q+R T GKS K++ +
Sbjct: 487 RRTEIIQED-GELIDLDLIANEQAVILLTEQGYIKRMPVSTFGQQSRATRGKSAAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD++L+FSDRG+VY AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSSRTARGVPIVQMLPIPKNEKITSML 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF+ D +L+MLT GYIKK L+ +S+IR G+IAI L GD+L+WVR +D +
Sbjct: 606 AVSEFSEDCYLIMLTRQGYIKKTVLSAYSNIRANGLIAITLSEGDQLRWVRLAREEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I D +R R RG +M+LK D++ S+DI+P+ + ++ T ED
Sbjct: 666 IGTRKGMAIHFKADSEQLRPTGRTARGVKSMKLKGTDEIISVDILPSQVVANIA-TSEDE 724
Query: 799 HSN----------VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DR 847
+ + + GPW+L ++ G+GKRVP+S FR +G+ +F + D+
Sbjct: 725 VEDETLETEEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFKNDHDQ 784
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
L A+ VV D+++++V+ G + R V I+ Q+R A GV + RL+ I
Sbjct: 785 LVAIHVVN--------QDDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIA 836
Query: 908 SASLI 912
+ +L+
Sbjct: 837 AVALV 841
Score = 43.1 bits (100), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 39/236 (16%)
Query: 582 DEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
D L+ ++ +GY+K+ + + N++ G I ++ + D + + R D ++ +
Sbjct: 613 DCYLIMLTRQGYIKKTVLSAYSNIRANGLIAITLSE---GDQLRWVRLAREEDSIIIGTR 669
Query: 641 RG--IVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS--IIP---VSEFAGDQ---- 689
+G I + A + ++ R A G V+ + L + I S I+P V+ A +
Sbjct: 670 KGMAIHFKADSEQLRPTGRTARG---VKSMKLKGTDEIISVDILPSQVVANIATSEDEVE 726
Query: 690 ------------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQLV-PGDELK 728
+++ +T GY K+V ++ F + G + AI+ D+L
Sbjct: 727 DETLETEEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFKNDHDQLV 786
Query: 729 WVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ DD + M + G++I + D I SR G RL + D +A++ ++P
Sbjct: 787 AIHVVNQDDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVP 842
>gi|443668512|ref|ZP_21134195.1| DNA gyrase, A subunit [Microcystis aeruginosa DIANCHI905]
gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
gi|443330801|gb|ELS45493.1| DNA gyrase, A subunit [Microcystis aeruginosa DIANCHI905]
Length = 850
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/847 (48%), Positives = 595/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER H+++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|440754404|ref|ZP_20933606.1| DNA gyrase, A subunit [Microcystis aeruginosa TAIHU98]
gi|440174610|gb|ELP53979.1| DNA gyrase, A subunit [Microcystis aeruginosa TAIHU98]
Length = 850
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 594/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
Length = 852
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/832 (50%), Positives = 591/832 (71%), Gaps = 23/832 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ LS LL DI+ +TV+F+ FD SQ+EP +LPARLP LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD A+IHNPE T EL++Y+PGPDFPTGG I+G GI DAY +GRG IT+RG
Sbjct: 187 NLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E + + + R +I+ E+PYQTNK+ L+EKIAELV +K +DGI+DIRDESDR GMR
Sbjct: 247 AEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A +V+N+LY+ T +Q++F NM+ +++G+P+ + LK+ L FL+FR V+
Sbjct: 307 IVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRVQVI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + +ER HI++G++V L NLD +I+++R+A S+A L ++F LSE QAD
Sbjct: 367 IRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQFGLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L ++L R+ + Q+I++E+ +LK+ +TP
Sbjct: 427 AILQMQLRRLTALESEKIQAEHQELQRKIADLTDILQRRERVDQIIQEELTQLKSTHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + + G + DID+I N++ ++ ++E+GY+KRM NTF Q+R T GKS K++ +
Sbjct: 487 RRTQIVEEEGG-IVDIDLIANEQAVILLTEQGYIKRMPVNTFGQQSRATRGKSGAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FSDRG+VY AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSSRTARGVPIVQMLPIPKDEKITSMV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF DQ+LVMLT GYIKK +L+ +++IR G+IAI L GD+L+WVR +D +
Sbjct: 606 AVSEFTEDQYLVMLTRQGYIKKTALSAYANIRANGLIAITLSEGDQLRWVRLAKEEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL---ERTP 795
+ ++ GM I D +R + R RG +M+LK D++ S+DI+P + ++ E
Sbjct: 666 IGTRQGMAIHFKADNEQLRPIGRTARGVRSMKLKGTDEIISVDILPGQVVANIGTSEDEI 725
Query: 796 EDSH------SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRL 848
ED + N + GPW+L ++ G+GKRVP++ FR +G+ +F +A+D+L
Sbjct: 726 EDENLESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRFKNAQDQL 785
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
AA+ +V ++++++V+ G + R V IS Q+R A G+ + RL
Sbjct: 786 AAIHIVN--------QEDEMMIVTSRGIIIRQAVDAISPQSRMATGIRVQRL 829
>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
Length = 893
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/879 (48%), Positives = 606/879 (68%), Gaps = 56/879 (6%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ +L DID +TV+F NFD SQ+EP +LP+R+P +L+NG+SGIAVGMATNIPPH
Sbjct: 127 LTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+++ L ALI NPE T EL++Y+PGPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 247 AAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD +I ++R A +TA L D + LSE Q+D
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELIDTYGLSEVQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+E+I L ++L+ R+ IL++I+ EV E+K +F++P
Sbjct: 427 AILQMQLRRLTALEAQKITQEHEELLEKIADLLDILAKRERILEIIQTEVAEIKLKFASP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ G++D+ D+I N++ ++ ++E+GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTIIEHAE-GEIDETDLIANEQAIILLTEQGYIKRMPVSTFEAQSRATRGKAGTKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VY R+Y+IP +R A GTP+VQ+L + E+ITSI+
Sbjct: 546 DGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIPVSSRTARGTPIVQLLPIPIEEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+EF+ +++L+MLT +G+IKK L+ FS+IR G+IAI L GD+L+WVR DD +
Sbjct: 606 SVTEFSNEEYLIMLTRSGFIKKTVLSAFSNIRANGLIAISLEEGDQLRWVRLARVDDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----------- 787
+ S+ GM I ++ + +R + R TRG +M+L+ GD++ MDI+P+++
Sbjct: 666 IGSRQGMTIHFRTNHEQLRPVGRATRGVKSMKLRAGDELIGMDILPSSIVASIAELETED 725
Query: 788 -----------------------HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
D E P S S GPW L ++ +G+GKRVP+
Sbjct: 726 SELEEEELEVSAQEIEVQVEEIEGSDAEEIPTAS------SQGPWALVITTNGYGKRVPV 779
Query: 825 SSFRKLPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
+ FR GL KF A+D +AA+ +V E+DE +++V+ G + R
Sbjct: 780 TQFRLQRRAGKGLTATKFKSKKAKDYVAALRIV-------NENDE-LMIVTSRGIIIRQT 831
Query: 882 VRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
V IS Q+R A GV + RL+ I + +L+ ++ E++
Sbjct: 832 VNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSGEESE 870
>gi|425448028|ref|ZP_18828009.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9443]
gi|389731292|emb|CCI04645.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9443]
Length = 850
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 594/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILARKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|443321731|ref|ZP_21050774.1| DNA gyrase, A subunit [Gloeocapsa sp. PCC 73106]
gi|442788575|gb|ELR98265.1| DNA gyrase, A subunit [Gloeocapsa sp. PCC 73106]
Length = 844
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/860 (49%), Positives = 605/860 (70%), Gaps = 28/860 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+
Sbjct: 5 TERIIPTDLSNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTHDRPFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
KCARVVGEVLGK+HPHGD +VYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTE
Sbjct: 65 KCARVVGEVLGKYHPHGDGSVYDALVRMAQDFSMRNPLIEGHGNFGSIDNDPPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
CRL++L+ LL DI+ +TV+F FD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIP
Sbjct: 125 CRLQSLTLNGLLRDIEAETVDFADTFDASQQEPVVLPARIPQLLLNGSSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGEL++ + A+I NPE T EL++Y+PGPDFPTGG I+G GI DAY RG IT+R
Sbjct: 185 PHNLGELINAVIAVIENPEITDLELIKYIPGPDFPTGGQILGYSGIKDAYTGARGSITMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
G +E + ++R +II E+PYQTNK+ L+EKIAELV K LDGISDIRDESDR GMR
Sbjct: 245 GVANIETA-ADNRREAIIITELPYQTNKAALIEKIAELVNEKRLDGISDIRDESDRDGMR 303
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +Q++F NMV +++G+P+ + LK+ L FL+FR V
Sbjct: 304 IVIELKRDAYPRVVLNNLYKQTPVQANFGANMVALVNGEPQLLALKQFLVLFLEFRLETV 363
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L + +ER HI++G+++ L+NLD +I ++R A +TA L +F LS QAD
Sbjct: 364 RRRTEYLLRKAEERDHILQGLLISLENLDTIIDLIRRASDTTTAKNELISQFGLSPVQAD 423
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L QI ++L+ + I ++I E+ E+K +TP
Sbjct: 424 AILQMQLRRLTALEAEKIKAEHEELQTQIADYTDILAKKTRIEEIIVTELQEIKTIHATP 483
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM + F QNR T GK+ K++ +
Sbjct: 484 RRTEIV-PDQGEIVDTDLIANEKAIILLTEQGYIKRMPVSNFEAQNRATKGKAGAKIKED 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C H+H+L+FS++G+VYS AY IP +R A GTP++Q+L + GE+ITS++
Sbjct: 543 DVVEHFLTCCDHNHLLFFSNQGVVYSLNAYHIPIASRIARGTPIIQMLPIDTGEKITSMV 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+EF DQ+L+MLT G IKK +L+ FS IR++G+IAI LV GD+L+WVR ++D V
Sbjct: 603 AVTEFTDDQYLIMLTRQGLIKKTALSAFSHIRSSGLIAISLVEGDQLRWVRLARSEDSVM 662
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S++GM I D +R L R+TRG AM+L+ GD++ SMDI+P+ + + + EDS
Sbjct: 663 IGSRHGMAIHFKADGQQLRPLGRSTRGVKAMKLRKGDELISMDILPSQIAETIPSDEEDS 722
Query: 799 HS---NVKGSS-GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFV 853
S N++ + GPWLL ++ G+GKRVP+++FR +G+ +F E D+LAA+ V
Sbjct: 723 DSEELNLENAHIGPWLLAITTGGYGKRVPVTAFRIQKRAGIGVKLIRFRKEKDKLAAIHV 782
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
V ++++++V+ G + R V+ IS+Q+R A GV + +L+ I + +L+
Sbjct: 783 VN--------QEDELMMVTSRGIIIRQAVKAISLQSRSATGVRVQKLDQEDAIAAVALV- 833
Query: 914 VTEPETDLFLPSTSDKLATE 933
P +S+++ TE
Sbjct: 834 ----------PPSSEEIETE 843
>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
Length = 864
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/856 (49%), Positives = 587/856 (68%), Gaps = 45/856 (5%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KCARVVGEVLGK
Sbjct: 1 MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECRL+AL+ LL
Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI+ +TV+F+ NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPHNLGEL+D L
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
ALIHNPE T EL++Y+ GPDFPTG ++G GI +AY TGRG IT+RG +E + +
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240
Query: 333 K--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD 390
+ R +II E+PYQTNK+ L+EKIA++V K L+GI+DIRDESDR GMRIVIELKR +
Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300
Query: 391 PSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQ 450
P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L+ FLDFR + RR R++L +
Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360
Query: 451 VKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRL 510
+ R H+++G+++ L LD +I ++R AP TA L + LSE QADAIL M LRRL
Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITNYGLSEVQADAILQMQLRRL 420
Query: 511 TMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADS 570
T LE K E + L QI L+++L+ R+ IL++IE E+ +LK FSTPR +++ +
Sbjct: 421 TALEADKIRQEHEDLQTQIADLQDILARRERILEIIETEIAQLKESFSTPRRTVILPGE- 479
Query: 571 GQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCR 630
G++D+ D+I N++ ++ ++E+GY+KRM NTF Q+R T GK+ K++ +D + F+ C
Sbjct: 480 GEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCC 539
Query: 631 AHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQF 690
HD +L+FSDRG+VY +AY+IP +R + GT +VQ+L + E+ITSI+PV EF+ +++
Sbjct: 540 DHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIVQMLPIPREEKITSIVPVDEFSREEY 599
Query: 691 LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVIL 750
LVMLT G IKK L FS+IR G+IAI L GD+L+WVR +D + + S+ GM I
Sbjct: 600 LVMLTKGGNIKKTELASFSNIRANGLIAISLEEGDQLRWVRRARVEDSILVGSRLGMAIH 659
Query: 751 SSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL----------------- 791
C + +R LSR TRG AM+LK GD++ MDI+PAA+ L
Sbjct: 660 FRCTHEQLRPLSRATRGVRAMKLKKGDELVGMDILPAAILDTLNTDEPETAEIEAVEIEA 719
Query: 792 -------------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLI 838
E E + GS GPW+L ++ G+GKRVP++ FR GL+
Sbjct: 720 VEIEAVEIEAVETENQEETAEVTSTGSIGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLM 779
Query: 839 GYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGV 895
KF +D+LA + +V + + DE +++V++ G + R V ISIQ+R A GV
Sbjct: 780 ATKFKNRKGKDKLATLRIV------NNDHDE-IMMVTKRGIIIRQAVNAISIQSRSATGV 832
Query: 896 ILMRLELSGKIQSASL 911
+ RL+ I ++
Sbjct: 833 RVQRLDEEDAINGVAI 848
>gi|425458561|ref|ZP_18838049.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9808]
gi|389827307|emb|CCI21545.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9808]
Length = 850
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 593/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|428304644|ref|YP_007141469.1| DNA gyrase subunit A [Crinalium epipsammum PCC 9333]
gi|428246179|gb|AFZ11959.1| DNA gyrase subunit A [Crinalium epipsammum PCC 9333]
Length = 886
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/878 (49%), Positives = 599/878 (68%), Gaps = 57/878 (6%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGLS +PF+KC
Sbjct: 7 RIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLSPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DPAAAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPAAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ +L DI+ +TV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQALTADAMLRDIEAETVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L LIHNPE T EL++Y+PGPDFPTG I+G I +AY TGRG IT+RG
Sbjct: 187 NLGELIDALVTLIHNPEITDVELMQYVPGPDFPTGAQILGTAAIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++++ + R +II E+PYQTNK+ L+EKIAE+V K L+GI+DIRDESDR GMR
Sbjct: 247 ATIETVENRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR P +V+N+LY+ T LQ++F CNM+ I++G+P+ + LK+ L+ FLDFR +
Sbjct: 307 IVIELKRDCYPRVVLNNLYKQTPLQANFGCNMLAIVNGEPQLLTLKKFLEVFLDFRIEAI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + ++R H+++G+++ L NLD +I ++R A +TA + + + LSE+QAD
Sbjct: 367 TRRTQYELRKAEDRDHLLQGLLIALLNLDVLIELIRRAADTATARQEMMETYALSEQQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E L QI L+++L+ R IL++IE EV +++ +TP
Sbjct: 427 AILQMQLRRLTALEAEKIRMEHDELQAQIADLKDILARRSRILEIIETEVKDIRATHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E G LDD D+I N++ L+ ++E+GY+KRM NTF Q+R T GK+ K++ +
Sbjct: 487 RRTVIEHGLGG-LDDTDLIANEKALILLTEQGYIKRMPVNTFEAQSRATRGKAGAKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FSDRG+VY RAY+IP +R + G P+VQ+L + E+ITSI+
Sbjct: 546 DGVEHFLTCCDHDSILFFSDRGVVYCLRAYQIPGASRTSRGVPIVQLLPIPRNEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF +++LVMLT G+IKK +L+ F +IR G+IAI L GD+L+WVR ++ +
Sbjct: 606 PVSEFTSEEYLVMLTQGGFIKKTALSAFGNIRANGLIAISLEEGDQLRWVRRARAEESII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL----------- 787
+AS+ GM I +S + +R L R TRG AM L+ GD++ SMDIIP+A+
Sbjct: 666 IASRQGMAIHFRTSHEQLRPLGRATRGVRAMNLRKGDELISMDIIPSAVLASPEFEEVAS 725
Query: 788 ----------------------------HKDLERTP--EDSHSNVKGSSGPWLLFVSESG 817
+DLE E + S+G W+L V+ G
Sbjct: 726 ETEETEDLSVIEIADETEDLSVVEIADETEDLELQEGLEVQEDSAVKSTGLWVLVVTMGG 785
Query: 818 HGKRVPLSSFRKLPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQS 874
+GKRVP+S FR GLI KF +D+L ++ VV AED ++++++
Sbjct: 786 YGKRVPVSQFRLQNRAGKGLIATKFKTRKGKDQLISLRVVN---AED-----ELMMITSR 837
Query: 875 GTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
G + R V I Q+R A GV + RL+ I + +L+
Sbjct: 838 GIIIRQSVSAIPSQSREATGVRVQRLDEDDAIAAVALV 875
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI---VCRAHDHVLYFSDR 641
+L ++ GY KR+ + F LQNR G K + I V A D ++ + R
Sbjct: 778 VLVVTMGGYGKRVPVSQFRLQNRAGKGLIATKFKTRKGKDQLISLRVVNAEDELMMITSR 837
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
GI+ IP +R A G VQ L D +++P S
Sbjct: 838 GIIIRQSVSAIPSQSREATGV-RVQRLDEDDAIAAVALVPPS 878
>gi|428220923|ref|YP_007105093.1| DNA gyrase subunit A [Synechococcus sp. PCC 7502]
gi|427994263|gb|AFY72958.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7502]
Length = 889
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/884 (48%), Positives = 600/884 (67%), Gaps = 35/884 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N S RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +P
Sbjct: 7 NQSDRIVPTDLRGEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPERP 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+KCARVVG+V+GK+HPHGD++VY++LVRMAQDFS+R L+ GHGNFGS+D DPAAAMRY
Sbjct: 67 FRKCARVVGDVIGKYHPHGDSSVYEALVRMAQDFSMRERLVDGHGNFGSVDNDPAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TECRL +++ L+ DID +TVNF N+D SQ+EP +LPAR+P LLLNG+SGIAVGMATN
Sbjct: 127 TECRLTRVAQVGLIQDIDAETVNFGDNYDGSQEEPLVLPARIPQLLLNGSSGIAVGMATN 186
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IP HNLGELVD L ALI NP+ T EL++Y+ GPDFPTG LI+G I + Y TGRG +T
Sbjct: 187 IPSHNLGELVDGLVALIANPDLTDLELMQYVQGPDFPTGALILGREAIRETYTTGRGSVT 246
Query: 319 VRGKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
+R + E++ + + R +II E+PYQTNK+ L+EKIAELV K LDGISDIRDESDR
Sbjct: 247 MRAVADFEVISNPGRQDREAIIITELPYQTNKAALIEKIAELVNEKRLDGISDIRDESDR 306
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
+GMR+VIELKR A P +V+N+L++ T LQS+F CNM+ I+DG P+ + LK LQ FLDFR
Sbjct: 307 NGMRLVIELKRDAYPKVVLNNLFKTTPLQSNFGCNMLAIVDGAPQVLTLKSALQVFLDFR 366
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSE 496
V+ RR +F+L + +ER H+++G++ L +LD +I ++R A ++A L + + LSE
Sbjct: 367 SEVITRRTQFQLRKAQERDHLLQGLLTALSHLDAIIALIRGADDTASAKLGLIETYGLSE 426
Query: 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556
QAD IL M LRRLT LE K E + L+ +I L +LS R+ +L + E+ +K
Sbjct: 427 VQADGILQMQLRRLTALEADKIQKEHEELVVEIADLNNILSDRQRVLAITRTELEAIKAE 486
Query: 557 FSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
F+TPR +++ D + G ++ D+I N E ++ ++E+GY+KRM +TF Q+R T GKS
Sbjct: 487 FATPRRTIILDGE-GDINTADLIANRETIVLVTEQGYIKRMPVDTFVAQSRATRGKSSTN 545
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
++ +DA+ F CR+HD VL+FSDRG VYS + Y+IPE +R A G +VQ+L +S E+I
Sbjct: 546 MKDDDAIDHFFACRSHDSVLFFSDRGKVYSLKGYEIPESSRTARGGAIVQMLPISSEEKI 605
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
TS++ +SEF D+FLVMLT GYIKK L+ F++IR+ G+IAI L D+L+WVR +
Sbjct: 606 TSVLAISEFTDDEFLVMLTAGGYIKKTKLSAFANIRSNGLIAIFLEDNDQLRWVRRAKVN 665
Query: 737 DLVAMASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH--KDLE 792
+ + + S+ GM I D +R + R+TRG AMRL + D++ MDI+PA L +D+E
Sbjct: 666 NTIIIGSKQGMAIRFRTDDQQLRPMGRDTRGVRAMRLSENDEIVGMDILPAGLAEIEDVE 725
Query: 793 RTPEDSHSNVKGSS------------------GPWLLFVSESGHGKRVPLSSFRKLPLNR 834
T S S V+ S PW+L V++ G+GK+VP+ FR
Sbjct: 726 TTDNLSVSEVEESEITDTPEELTEELCDDKSMAPWVLVVTQGGYGKKVPVGQFRIQKRFG 785
Query: 835 VGLIGYKF-SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
G+ KF S +D+LAA+ +V ++DE++++V+ G V R I+ Q+R AR
Sbjct: 786 KGIRATKFKSGQDQLAALKLV--------DADEELMIVTSRGIVMRQATNAIACQSRTAR 837
Query: 894 GVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVS 937
GV L RL+ I +L+ E + +P S + E+ V+
Sbjct: 838 GVRLQRLDADDAIADVTLVPAA-IEENTIVPELSSVPSGETAVT 880
>gi|443476930|ref|ZP_21066810.1| DNA gyrase subunit A [Pseudanabaena biceps PCC 7429]
gi|443018023|gb|ELS32347.1| DNA gyrase subunit A [Pseudanabaena biceps PCC 7429]
Length = 894
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/850 (49%), Positives = 587/850 (69%), Gaps = 29/850 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELG+++ +PF+KC
Sbjct: 8 RIIPTDLRGEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGMTADRPFRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVG+V+GK+HPHGD AVY++LVRMAQDFS+R L+ GHGNFGS+D DPAAAMRYTECR
Sbjct: 68 ARVVGDVIGKYHPHGDTAVYEALVRMAQDFSMRDRLVDGHGNFGSVDNDPAAAMRYTECR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S+ L+ DI+++TVNF N+D SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 128 LTRISQVGLIQDIERETVNFGDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGELVD L ALI NP T EL+ Y+PGPDFPTG LI+G G + Y TGRG +T+R
Sbjct: 188 NLGELVDGLVALIANPSLTDLELMHYIPGPDFPTGALILGTDGARETYTTGRGSVTMRAV 247
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E + + R +II E+PYQTNK+ L+E+IAE+V K +DGISDIRDESDR GMR
Sbjct: 248 ADFETISVAGRQDREAIIITEMPYQTNKAALIERIAEMVNEKKIDGISDIRDESDRDGMR 307
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIELKR A P +V+N+LY+ T LQS+FSCNM+ ++DG+P + L+ LQ FLDFR V+
Sbjct: 308 LVIELKRDAYPRVVLNNLYKSTPLQSNFSCNMLALVDGEPITLTLRHALQVFLDFRYEVI 367
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L++LD VI ++R A +STA A L + + L+E QAD
Sbjct: 368 TRRTQYELRKAEERDHLLQGLLIALNHLDAVIALIRAAEDSSTAKAGLIETYGLTEAQAD 427
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT + K DE L+E+I L+ +L +R IL + +E+ +K F+TP
Sbjct: 428 AILQMQLRRLTAQDADKINDEHNQLVEKIADLQHILQNRDRILTITREELEAIKAEFTTP 487
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R S + + G +D D+I N E ++ ++E+GYVKRM +TF Q+R T GK+ ++ +
Sbjct: 488 RRSRIL-PNEGDIDTADLIANRETIVMVTEQGYVKRMPVDTFTAQHRATRGKASANVKDD 546
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA++ F CR+HD VL+F+DRG VY +AY++PE R A GT +VQ+L ++ E+IT+++
Sbjct: 547 DAIAHFFACRSHDKVLFFTDRGKVYGVKAYEVPESGRAARGTAVVQLLPIAADEKITTVL 606
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+S+F D++LVMLT GYIKK L F++IR+ G+IAI L GD L+WVR D+ +
Sbjct: 607 PISDFNEDEYLVMLTAGGYIKKTKLPAFANIRSNGLIAIALEEGDLLRWVRRAKADNTII 666
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S+ GM I D +R + R+TRG +MRL D + SMDI+PA L +
Sbjct: 667 VGSRQGMSIRFRTDHEQLRPMGRDTRGVRSMRLTGDDLIVSMDILPAGLAEIEADESEEE 726
Query: 792 --------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF- 842
E ++ + + GPW+L V+ G+GKRVP+S FR GL KF
Sbjct: 727 IDLTATVSEDENLEAETGNDKAQGPWVLVVTRGGYGKRVPVSQFRIQKRAGKGLRVTKFK 786
Query: 843 SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL 902
S +D+LA++ +V + ++++V+ G V R I+ Q+R ARGV L RL+
Sbjct: 787 SGQDQLASLCLV--------DEQNELMIVTSRGIVMRQSTDAIACQSRTARGVRLQRLDA 838
Query: 903 SGKIQSASLI 912
S I A+L+
Sbjct: 839 SDAIVGATLV 848
>gi|390441523|ref|ZP_10229588.1| DNA gyrase subunit A [Microcystis sp. T1-4]
gi|389835163|emb|CCI33714.1| DNA gyrase subunit A [Microcystis sp. T1-4]
Length = 850
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/847 (48%), Positives = 594/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRLEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER H+++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILARKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|425456212|ref|ZP_18835923.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9807]
gi|389802762|emb|CCI18238.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9807]
Length = 850
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 593/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A + A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTAGAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILARKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADGQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|425435051|ref|ZP_18815511.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9432]
gi|389675224|emb|CCH95625.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9432]
Length = 850
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/841 (49%), Positives = 590/841 (70%), Gaps = 21/841 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + ++
Sbjct: 667 GSRQGMAIHFKADGQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ ++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITARGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 I 912
+
Sbjct: 839 V 839
>gi|425452156|ref|ZP_18831974.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 7941]
gi|389766265|emb|CCI08123.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 7941]
Length = 850
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/841 (49%), Positives = 590/841 (70%), Gaps = 21/841 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RSHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + ++ ++
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAQSNQEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV E+ ++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PHEEFMIITARGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 I 912
+
Sbjct: 839 V 839
>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
gi|425466329|ref|ZP_18845632.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9809]
gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
gi|389831201|emb|CCI26219.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9809]
Length = 850
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 594/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLAKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RTHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + E+
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNEEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
gi|383323324|ref|YP_005384178.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326493|ref|YP_005387347.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492377|ref|YP_005410054.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437645|ref|YP_005652370.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
gi|451815734|ref|YP_007452186.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
gi|8469101|sp|Q55738.1|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
gi|339274678|dbj|BAK51165.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
gi|359272644|dbj|BAL30163.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275814|dbj|BAL33332.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278984|dbj|BAL36501.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960789|dbj|BAM54029.1| DNA gyrase subunit A [Bacillus subtilis BEST7613]
gi|451781703|gb|AGF52672.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
Length = 860
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/834 (50%), Positives = 580/834 (69%), Gaps = 25/834 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R++ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L LS LL DI+ +TV+F+ NFD SQ+EP++LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T QEL++ +PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + R +I+ E+PYQTNK+ L+E+IA+LV +K +DGI+DIRDESDR GMR
Sbjct: 247 ASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A +V+N+LY+ T +QS+F N++ +++G P+ + +K+ L F +FR +
Sbjct: 307 IVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ LDNLD VIR++R A ++A L + F LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFSLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I +++L+ R+ + +IE+E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ D G+L D D+I ND+ L+ ++E+GY+KRM +TF QNR T GK+ K++ +
Sbjct: 487 RRTVIVQED-GELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D + +MLT GYIKK +L+ FS+IR G+IAI LV GD+L+WVR +D V
Sbjct: 606 SVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVI 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ SQ GM I + D +R+L R TRG +MRL+ GD + SMDI+P+ + ++ ED
Sbjct: 666 IGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSEDE 725
Query: 799 HSNVKGSS-----------GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAED 846
G GPWLL V+ G GKRVP+ FR +G+ +F S +D
Sbjct: 726 PDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDD 785
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+L A+ VV +D+++++V+ G + R V DIS Q+R A GV + RL
Sbjct: 786 QLVALHVVN--------ADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRL 831
>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
Length = 840
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/834 (50%), Positives = 580/834 (69%), Gaps = 23/834 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P L EM SY+ Y+MSV++GRALPD RDGLKPVHRRILFAMHELGL +P++KCA
Sbjct: 4 IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+VLGK+HPHGD+AVYD+LVR+AQDFS RY LI GHGNFGS+D DP AAMRYTECRL
Sbjct: 64 RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LLAD++ +TV+F NFD SQ+EP++LP+RLP LLLNG++GIAVGMATNIPPH
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGELVD + AL+ NP + EL+ Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E + + + R ++I E+PYQ K+ L+EKIAELV +K +DGISDIRDESDR G+R
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+L++LT LQ++F CNM+ +++G+P+ + LKE LQ F+DFR V+
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++L + +ER HI+ G++V L NL+ VI ++R A ++A A L + F+LSE QA+A
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQAEA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT +E + E + L+ +I L ++L R+ I Q+I E++ K R + PR
Sbjct: 424 ILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLERRERIDQIIRDELLTAKQRLNDPR 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+++E A+ G++DD D+I N EM++ ++E+GY+KR+ +TF+ Q R T GKS ++R +D
Sbjct: 484 RTIIEKAE-GEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGKSGARMREDD 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
A+ FI C HD VL+F++RG+VY+ R Y+IP +R A GTP+VQ+L + E++TSI+P
Sbjct: 543 AVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGSRTAKGTPVVQLLPIPIEEKVTSIVP 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EFA D+FLVMLT G+IKK +L F+++R G+IAI L GDEL+WVR +D + +
Sbjct: 603 VQEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRWVRRARAEDDILV 662
Query: 742 ASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +R L R RG +M L+ GD++ SMDI+ +
Sbjct: 663 GSRAGMAIRFRADEEQLRPLGRTARGVKSMELRKGDELVSMDILSCE---------QRER 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSL 858
+ G GPW+L V+ G GKRVP S FR +G+I KF + D LAA+ VV
Sbjct: 714 AEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAALRVVS--- 770
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
++++++V+ G + R + +IS Q+R A GV + RL+ I +++
Sbjct: 771 -----CEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVV 819
>gi|428218266|ref|YP_007102731.1| DNA gyrase subunit A [Pseudanabaena sp. PCC 7367]
gi|427990048|gb|AFY70303.1| DNA gyrase subunit A [Pseudanabaena sp. PCC 7367]
Length = 912
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/858 (49%), Positives = 595/858 (69%), Gaps = 33/858 (3%)
Query: 74 ATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 133
+T PN RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHEL L
Sbjct: 4 STHTPN--DRIIPTDLRGEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELNL 61
Query: 134 SSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA 193
S+ +PF+KCARVVG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ GHGNFGS+D DP
Sbjct: 62 SADRPFRKCARVVGDVIGKYHPHGDTAVYDALVRMAQDFSMRDRLVDGHGNFGSVDNDPP 121
Query: 194 AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAV 253
AAMRYTECRL +++ LL DI DTVNF N+D SQ+EP ++P+RLP LLLNG+SGIAV
Sbjct: 122 AAMRYTECRLTRIAQDSLLQDISFDTVNFADNYDGSQQEPIVMPSRLPQLLLNGSSGIAV 181
Query: 254 GMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
GMATNIPPHNL ELVD L ALI +PE + +L+ +PGPDFPTG LI+G I D Y TG
Sbjct: 182 GMATNIPPHNLSELVDGLVALIDDPELSDLDLITLIPGPDFPTGALILGKQAIRDTYATG 241
Query: 314 RGRITVRGKTEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
RG I +R TE+E + + + ++ +I+ E+PYQTNK+ L+EKIAELV +K LDGISDIR
Sbjct: 242 RGSIAMRAVTEIETVSAPGRQEKEAIIVTELPYQTNKAALIEKIAELVNDKRLDGISDIR 301
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
DESDR+GMRIVIEL+R A P +VVN+L++LT +QS+FSCNM+ ++DG+P+ + L++ L
Sbjct: 302 DESDRTGMRIVIELRRDAYPQVVVNNLFKLTPMQSNFSCNMLALVDGEPRILSLRDTLTV 361
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
F+DFR +VV RR +++L + +ER H+++G ++ L NLD VI ++R A + A +L
Sbjct: 362 FIDFRVNVVTRRTQYELRKAEERDHLLQGFLIALANLDEVIALIRGADDTAEARGSLMTN 421
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
++LS+ QAD IL M LRRLT LE K E L+ +I L ++L++R I+ +I +E+
Sbjct: 422 YELSQAQADGILQMQLRRLTALEVGKIEQEHNELVAKIADLRDILANRDRIMAIIREELE 481
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
K F+TPR + + +A+ G++D D+I N E ++ I+E+GY+KR+ + F QNR T G
Sbjct: 482 AAKAAFATPRRTQILEAE-GEIDTADLIANREAIILITERGYIKRLPVDIFAAQNRATRG 540
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
K+ ++ +DA+ F CR+HD +L+FSDRG VYS RAY+I E +R + G+ LVQ+L ++
Sbjct: 541 KAGTSMKEDDAVEHFFACRSHDSLLFFSDRGKVYSLRAYEIHEGSRTSRGSALVQMLPIA 600
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+ TS+IPVSEFA D++LVMLT GYIKK L+ F++IRT G+IAI L P D L WVR
Sbjct: 601 GDEKFTSVIPVSEFAEDEYLVMLTAGGYIKKTKLSAFANIRTNGLIAISLEPDDTLSWVR 660
Query: 732 CCTNDDLVAMASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHK 789
+ D+ + + S++G+ I D +R + R+TRG AM+L GD++ SMDI+PA L +
Sbjct: 661 RASADNTIIIGSKDGIGIRFRTDNEQLRPMGRDTRGVRAMKLGKGDQLVSMDILPAGLAE 720
Query: 790 --------------DLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV 835
DLE T E S V + GPW+L V++ G GKRVP+ FR
Sbjct: 721 VEGGDDNGDDNCGSDLE-TSETESSEV--NEGPWVLVVTQDGAGKRVPVDQFRIQRRAGR 777
Query: 836 GLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG 894
G KF +D+LAA+ +V D++++L++ G V R V I+ Q+R A+G
Sbjct: 778 GCRVTKFKHGDDQLAALRLVN--------EDDELILITARGIVMRQAVDAIACQSRSAKG 829
Query: 895 VILMRLELSGKIQSASLI 912
V + RL+ I +L+
Sbjct: 830 VRVQRLDDDDAIVGVALV 847
>gi|422303324|ref|ZP_16390677.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9806]
gi|389791711|emb|CCI12488.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9806]
Length = 850
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 594/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 IVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRLEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER H+++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RTHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + E+
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNEEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDEGEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +E+ ++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PNEEFMIITARGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDAE 845
>gi|428316730|ref|YP_007114612.1| DNA gyrase subunit A [Oscillatoria nigro-viridis PCC 7112]
gi|428240410|gb|AFZ06196.1| DNA gyrase subunit A [Oscillatoria nigro-viridis PCC 7112]
Length = 903
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/888 (48%), Positives = 609/888 (68%), Gaps = 67/888 (7%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLGNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLAPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R LI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRERLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ +L DID +TV+F NFD SQ+EP +LPAR+P +LLNG+SGIAVGMATNIPPH
Sbjct: 127 LTALTSDSMLRDIDSETVDFGDNFDGSQQEPLVLPARIPQILLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNP T EL++Y+PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGEIIDGLVALIHNPAITDLELMQYIPGPDFPTGGQILGRSGIRDAYTTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + +II E+PYQTNK+ L+EKIAELV +K LDGISDIRDESDR GMR
Sbjct: 247 ASIETIEHPGRPDKEAIIITELPYQTNKAGLIEKIAELVNDKRLDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + L + L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLTLSQFLNVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ L+NLD +I ++R A ++ A L D + LS++Q+D
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALENLDAIIHLIRAAADSAAAKQELMDNYGLSDQQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I LE++L+ R+ IL++ E E +E++ + +TP
Sbjct: 427 AILQMQLRRLTALEAQKIQQEHEELRAKIADLEDILARRERILEIAEFEAVEIQTKIATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R S++E A+ G++D+ D+I N++ ++ I+E+GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRSVIEHAE-GEIDERDLIANEQAIILITEQGYIKRMPVSTFEAQSRATRGKAGAKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS +AY+IP C+R A GTP+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDSVLFFSDRGVVYSVKAYQIPVCSRTARGTPVVQLLPIPIEEKITSMV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+EF +++LVMLT GYIKK +L+ F +IRT G+IAI L GD+L+WVR DD +
Sbjct: 606 SVTEFTSEEYLVMLTRGGYIKKTALSAFGNIRTNGLIAISLEEGDQLRWVRRAKVDDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL-ERTPED 797
+ ++ GM I ++ + +R + R TRG +M+L+ GD++ SMDI+P+++ ++ E ED
Sbjct: 666 IGTRQGMAIHFRTNHEQLRPVGRATRGVKSMKLRSGDELISMDILPSSIVAEIAELDAED 725
Query: 798 SH---SNV----------------------------------------------KGSSG- 807
S +N+ K SSG
Sbjct: 726 SEFEGANIAQLEIEDSEFEGAEIADLENEEAELEDEELELQAEEIEGEEAEEIQKNSSGV 785
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF---SAEDRLAAVFVVGFSLAEDGES 864
P +L ++ +G+GKRVP+S FR GL KF A+D +AA+ +V
Sbjct: 786 PSVLVITTNGYGKRVPVSQFRLQRRAGKGLTATKFKSKKAKDYVAALRIVN--------E 837
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
D+++++V+ G + R V IS Q+R A GV + RL+ I + +L+
Sbjct: 838 DDELMIVTNRGIIIRQAVSAISTQSRTATGVRVQRLDEDDSIVAVALV 885
>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
Length = 864
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/856 (49%), Positives = 587/856 (68%), Gaps = 31/856 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KC
Sbjct: 11 RIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTE R
Sbjct: 71 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAAMRYTESR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ LL DI+Q+TV+F NFD SQ+EP ++PAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 131 LRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGMATNIPPH 190
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ + ALI NPE + ++L++Y+PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 191 NLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRGSITMRGV 250
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 251 ARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDGMR 310
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ +F NM+ +++G+P+ + LKE L FL FR V+
Sbjct: 311 IVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFLKFRIQVI 370
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR ++ + +ER H+++G+++ L NLD VI ++R A +TA L D + LSE QAD
Sbjct: 371 ERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELIDSYGLSEPQAD 430
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ QI +++L + IL +I+ EV +LK RF++P
Sbjct: 431 AILQMQLRRLTALEAEKIQREHEDLVAQIADFQDILDRPERILSIIQTEVEQLKTRFASP 490
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E + G++D D+I N + ++ ++E+GY+KRM +TF Q+R G+ +++ +
Sbjct: 491 RRTVIEQLE-GEIDTTDLIANQKAVILVTEQGYIKRMPVDTFEAQSRDGRGRKGAQIKED 549
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ F C HD +L+FSDRG+ Y +AY+IP +RNA G P+VQ+L + E+ITS++
Sbjct: 550 DAVEHFFACCDHDGILFFSDRGVAYCLKAYQIPIGSRNARGVPIVQLLPIPREEKITSVV 609
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF D++LVMLT GYIKK +L+ FS+IR G+IAI L GD+L+WVR D +
Sbjct: 610 PVDEFREDEYLVMLTAGGYIKKTALSAFSNIRANGLIAIALETGDQLRWVRRAREGDSII 669
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I D +R L R TRG AM L+ GD++ MDI+P+A+ +L D+
Sbjct: 670 IGSRQGMAIHFRTDHEQLRPLGRATRGVRAMALRAGDELIGMDILPSAIVANLAVATSDA 729
Query: 799 HSNV---------------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF- 842
+ GPW+L V+ G GKRVP+S FR G+ KF
Sbjct: 730 EVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFK 789
Query: 843 --SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+D+LAA+ +V +GE +++++V+ G + R V IS Q+R A GV L RL
Sbjct: 790 TRQTQDQLAALRIV------NGE--DELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRL 841
Query: 901 ELSGKIQSASLISVTE 916
+ I + +++ TE
Sbjct: 842 DEEDSIAAVTIVPSTE 857
>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
Length = 842
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/840 (50%), Positives = 584/840 (69%), Gaps = 38/840 (4%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++GRALPD RDGLKPVHRRIL+AMHELGL +PF+KCARVVGEVLGK+HPHGD AV
Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
YD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL+AL+ + LL DI+ +TV+
Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
F+ NFD SQ+EP++LP+R+P LLLNG+SGIAVGMATNIPPHNLGEL+D L ALI+NPE T
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK--RMGVII 339
+L++Y+ GPDFPTG I+G I +AY TGRG IT+RG +E + +++ R +II
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240
Query: 340 KEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLY 399
E+PYQTNK+ L+EKIAELV +K +DGI+DIRDESDR GMRIVIELKR + P +V+N+LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300
Query: 400 RLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVE 459
+ T LQ++F NM+ +++G+P+ + LK L FLDFR + RR R++L + +ER H+++
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360
Query: 460 GIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFV 519
G+++ L +LD +I ++R AP TA L + + LSE QADAIL + LRRLT LE K
Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELINSYGLSEVQADAILQIQLRRLTALEADKIR 420
Query: 520 DESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDII 579
E + L QI L ++L R+ +L++IE E ++K +F+TPR + + A+ G++DDID+I
Sbjct: 421 LEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFATPRRTTITHAE-GEIDDIDLI 479
Query: 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N+++L+ ++++GY+KRM +TF QNR T GK+ K++ +D + F+ C HD VL+FS
Sbjct: 480 ANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFS 539
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
DRG+VYS +AY+IPE +R + GTP+VQ+L + E+ITSI+ VSEF+ +++LVMLT G
Sbjct: 540 DRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEYLVMLTKGGN 599
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC--DIIR 757
IKK +L FS IR G+IAI L GD+L+WVR +D V + S+ GM I C D +R
Sbjct: 600 IKKTALEAFSHIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIHFRCDNDQMR 659
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE---------------DSHSNV 802
L R TRG +M+LK GD++ MDI+PAA+ L E + SN+
Sbjct: 660 PLGRATRGVKSMKLKTGDELIGMDILPAAILNTLNTDTEMEEEPTEVEELSDNIEETSNI 719
Query: 803 KGSS-------GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF---SAEDRLAAVF 852
+ ++ GPW+L ++ G+GKRVP+ FR GL KF +D+LA +
Sbjct: 720 EIATGEPANILGPWVLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLR 779
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+V DE++++ + G + R + ISIQ+R A GV + +L+ I +++
Sbjct: 780 IVN--------PDEEIMMATNRGIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVV 831
>gi|425440257|ref|ZP_18820563.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9717]
gi|389719359|emb|CCH96801.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9717]
Length = 850
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/847 (49%), Positives = 591/847 (69%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 IVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER HI++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K +TPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQIKTIHATPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RTHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKEDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + E+
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNEEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV E+ ++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PHEEFMIITARGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ + E
Sbjct: 839 VPPNDGE 845
>gi|425471341|ref|ZP_18850201.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9701]
gi|389882842|emb|CCI36765.1| DNA gyrase subunit A [Microcystis aeruginosa PCC 9701]
Length = 850
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/847 (49%), Positives = 593/847 (70%), Gaps = 21/847 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KCA
Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECRL
Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ LL DI+ +TV+F NFD SQ+EP +LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D ALIHNP+ T EL Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247
Query: 324 EVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
E ++ + + R +II E+PYQTNK+ L+EKIA+LV ++ +DGISD+RDESDR G+R+
Sbjct: 248 SFETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIELKR A P +V+N+LY+ T LQS+F NM+ ++D +P+ + L+E L+ FLDFR V+
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRLEVIT 367
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR R++L + +ER H+++G+++ L +LD VI ++R A ++A L F LSE QADA
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFGLSEVQADA 427
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL M LRRLT LE +K E L+ +I L+++L+ ++ I +IE+E+ ++K STPR
Sbjct: 428 ILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILARKERIDSIIEEELQQIKTIHSTPR 487
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +E + G++ + D+I N++ L+ ++E+GY+KRM NTF QNR T GK+ K++ +D
Sbjct: 488 RTHIEQRE-GEIAETDLIANEQALILVTEQGYIKRMPVNTFESQNRATRGKAGAKMKDDD 546
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ FI CR HD VL+F+DRG+VYS AY IP +R A G P+VQ+L + GE+ITS++
Sbjct: 547 GIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVA 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSEF+ D +L+MLT G+IKK +L FS+IR+ G+IAI L GD+L+WVR +D V +
Sbjct: 607 VSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVII 666
Query: 742 ASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
S+ GM I D +RSL R T+G +M+L+ GD++ SMDI+P+ + + + E+
Sbjct: 667 GSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSGDELISMDILPSQIVAQIAESNEEET 726
Query: 800 SNVK-------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
+ ++GPW+L ++ +G GKRVP++ R +G+ KF + D+LAA+
Sbjct: 727 EDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAAL 786
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV E+ +++++ G + R V I+ Q+R A G+ + +L+ I + +L
Sbjct: 787 HVVN--------PHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVAL 838
Query: 912 ISVTEPE 918
+ ++ E
Sbjct: 839 VPPSDGE 845
>gi|443328598|ref|ZP_21057193.1| DNA gyrase, A subunit [Xenococcus sp. PCC 7305]
gi|442791729|gb|ELS01221.1| DNA gyrase, A subunit [Xenococcus sp. PCC 7305]
Length = 854
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/831 (50%), Positives = 588/831 (70%), Gaps = 21/831 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ DTV F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQSLATDALLRDIESDTVGFADNFDGSQQEPVVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALI NPE T EL++Y+PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGAIALITNPEITDLELMQYIPGPDFPTGGQILGRSGIKEAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + K + + +II ++PYQTNK+ L+EKIA+LV +K +DGISDIRDESDR+GMR
Sbjct: 247 ADIETIHPKGRQEKEAIIITQLPYQTNKASLIEKIADLVNDKRIDGISDIRDESDRNGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++ T +QS+F NM+ ++ G+P+ + +K+ L+ F+ FR +
Sbjct: 307 IVIELKRDAYPRVVLNNLFKQTPVQSNFGANMLALVGGEPQLLSIKKFLEVFIQFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ L + +ER H+++G+++ L ++DRVI ++R A +TA L + +LS QAD
Sbjct: 367 TRRTQYLLRKAEERDHLLQGLLIALQSIDRVIELIRHAADTATAKEELMGQLELSVVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L QI +++L+ R+ I +I +EV +KN +TP
Sbjct: 427 AILQMQLRRLTALEAEKIQGEHEDLQLQITDFQDILAKRERIEAIIVEEVTNVKNAHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + G+L DID+I N++ ++ ++E GYVKRM +TF+ QNR T GK+ K++ +
Sbjct: 487 RRTEIIQGE-GELLDIDLIANEQAVILLTEHGYVKRMPVSTFDAQNRATRGKAGAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ FI C H+ +L+FSDRG+VYS AY+IP +R + GTPL+Q+L +S E+ITS++
Sbjct: 546 DAIEHFITCCDHNTLLFFSDRGVVYSLPAYQIPTASRTSRGTPLLQMLPISQEEKITSVV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF +++LVMLT G IKK +L+ F SIR+ G+IAI L GD+L+WVR +D +
Sbjct: 606 SVVEFTEEEYLVMLTRKGNIKKTALSAFKSIRSNGLIAISLEEGDQLRWVRLAKPEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + NGM I D +R L R T+G +M+LK D++ SMDI+P+ + L+ + +D
Sbjct: 666 IGTHNGMAIHFKVDHQQLRPLGRATKGVKSMKLKGDDELISMDILPSQVAASLDASQDDD 725
Query: 799 HSNV-------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAA 850
+ + + PWLL ++ +G+GKRV +S FR +G+ KF ++ DRLAA
Sbjct: 726 EDDETEEIISEEATLAPWLLAITTNGYGKRVSVSKFRLQNRAGMGVRAIKFKSQSDRLAA 785
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ VV + ++ ++V+ G + R V IS+Q+R A GV + RL+
Sbjct: 786 IHVVNPA--------DEFMIVTNRGIIIRQVVDAISLQSRSATGVRVQRLD 828
>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
Length = 854
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/852 (50%), Positives = 598/852 (70%), Gaps = 24/852 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL KPF+KC
Sbjct: 7 RIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PL+ GHGNFGSID DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L LS LL DI+ +TV+F NFD SQKEP +LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNPE ++L++ +PGPDFPTGG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E L+ +S R +II ++PYQTNKS L+E+IA++V +K +DGISDIRDESDR GMR
Sbjct: 247 AQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDREGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A +V+N++Y+ T +Q++F NM+ ++ G+P+ + LK L F+ FR +
Sbjct: 307 IVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR++++L + +ER H+++G+++ LD+LD +I I+R A + TA L D+F+LS+ QAD
Sbjct: 367 IRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQFELSDVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E K L +I L ++LS ++ I +IE+E++++KN TP
Sbjct: 427 AILQMQLRRLTALEAEKIHAEHKELQIKIANLNDILSKKERIEAIIEEELVQIKNIHGTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM ++F+ Q R T GK+ K++ N
Sbjct: 487 RCTEIIH-DEGEIVDTDLIANEQAIILLTEQGYIKRMPVSSFDAQQRATRGKAGAKIKEN 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL FSDRG+VY+ AY+IP +R + G P+VQ+LS+S E+ITSII
Sbjct: 546 DVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSSRTSRGVPIVQMLSISKSEKITSII 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D FLVMLT GYIKK +L+ FS+IRT G+IAI L GD+L+WVR +D V
Sbjct: 606 SVSEFKEDIFLVMLTRQGYIKKTALSAFSNIRTNGLIAISLGEGDQLRWVRLTREEDSVI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I D +R L R TRG +MRLK D++ SMDI+ A + +E + ++
Sbjct: 666 LGTRLGMAIHFHADHQQLRPLGRATRGVKSMRLKKKDELISMDILSAQVTIGVEESQDNE 725
Query: 799 H---------SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRL 848
+ + S GPW+L ++ G+GKR+P++ FR +G+ KF S +D L
Sbjct: 726 EVLEIEPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGMGVRAIKFKSGKDNL 785
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
++ VV AED ++++VS G + R V+ IS+Q+R A GV + RL+ I +
Sbjct: 786 TSLRVVN---AED-----ELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAA 837
Query: 909 ASLISVTEPETD 920
+L+ PE D
Sbjct: 838 VALVPPV-PEED 848
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ ++E G+ KR+P+SSF G G K D + D VV
Sbjct: 510 IILLTEQGYIKRMPVSSFDAQQRATRGKAGAKIKENDVVEHFLTC---------CDHDVV 560
Query: 870 LV-SQSGTVNRIKVRDISIQARYARGV-ILMRLELSGKIQSASLISVTEPETDLFL 923
L+ S G V I +R +RGV I+ L +S + S+ISV+E + D+FL
Sbjct: 561 LLFSDRGVVYATNAYQIPSSSRTSRGVPIVQMLSISKSEKITSIISVSEFKEDIFL 616
>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
Length = 857
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/838 (50%), Positives = 590/838 (70%), Gaps = 31/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ LS LL DI+ +TV+F+ NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D ALIHNPE EL + +PGPDFPTGG I+G GI DAY +GRG IT+RG
Sbjct: 187 NLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E L+ + + R +I+ E+PYQTNK+ L+E+IA+LV K ++GISDIRDESDR GMR
Sbjct: 247 AQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T +QS+F NM+ +++G+P+ + LK+ L FL+FR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD VI+++R A +TA L ++F LS QAD
Sbjct: 367 TRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQFGLSVVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I L+++L+ R+ I +IE+E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEAEKIHAEHQELEAKIADLQDILARRERIEAIIEEELTQIKTIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G++ D D+I N++ ++ ++E+GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRTEIIH-DEGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFGAQSRATRGKAAAKIKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HDHVL+FSDRG+VY+ AY+IP +R A G P+VQ+L + E+ITSI+
Sbjct: 546 DVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQIPAASRTARGVPIVQMLPIPKDEKITSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D + +MLT GYIKK +L+ FS+IRT G+IAI L GD+L+WV+ +D +
Sbjct: 606 AVSEFREDVYFIMLTRKGYIKKTALSAFSNIRTNGLIAIVLGEGDQLRWVKVAQEEDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT---- 794
+ ++ GM I D IR L R+TRG AM+LK GD++ SMDI+ + + +
Sbjct: 666 IGTRLGMAIHFHADHQQIRPLGRSTRGVKAMKLKKGDELISMDILSSQVIAGISTVHEGE 725
Query: 795 -------PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL----IGYKFS 843
E+ + + S GPW+L ++ G+GKRVP+ FR NR GL I +K S
Sbjct: 726 EEEDLLENEEELTVEETSGGPWILTITNGGYGKRVPVKQFRL--QNRAGLGVRVIKFK-S 782
Query: 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DRLA++ VV E DE +++VS G + R V IS Q+R A GV + RL+
Sbjct: 783 PSDRLASLLVV-------NEEDE-LMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLD 832
>gi|409990344|ref|ZP_11273731.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
gi|409938792|gb|EKN80069.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
Length = 884
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/862 (48%), Positives = 590/862 (68%), Gaps = 36/862 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM SY+ Y+MSV++GRALPD RDG KPVHRRIL+AM+ELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI+GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ +L DID DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL ELVD L A+IHNPE T EL+ Y+PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 247 AQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK L FLDFR +
Sbjct: 307 IVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRIHTI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ + +ER H+++G+++ LDNLD +I ++R A + TA L + F LSE QAD
Sbjct: 367 RRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLSEPQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+E+I L ++L+ R+ IL+++EQE I++K R TP
Sbjct: 427 AILQMQLRRLTALEAQKIDQEHQELLEKIADLNDILNRRERILEIVEQEAIQIKERHGTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E +S +L+D D+I N++ ++ ++E+GY+KRM NTF QNR T GKS K++ +
Sbjct: 487 RRTEIELEES-ELEDTDLIANEKAIILLTEQGYIKRMPVNTFEAQNRATRGKSGTKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ CR HD +L+F++RG+ Y +AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVKHFLSCRDHDSILFFTERGVAYCLKAYQIPIGSRIARGVPIVQMLPIPRDEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF D++LVMLT GYIKK +L+ FS+IR+ G+IAI L GDEL+WVR DD +
Sbjct: 606 AVGEFTNDEYLVMLTKGGYIKKTALSAFSNIRSNGLIAISLNEGDELRWVRSARVDDSII 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH---------- 788
+ S+ GM I D +R L R TRG +M+LK D++ MDI+P+ +
Sbjct: 666 IGSRLGMAIHFHTDDKQLRPLGRATRGVKSMKLKPNDELIGMDILPSFIVATIPQLGGEE 725
Query: 789 ---------------KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLN 833
+D++ + E + + V+ G +L ++ G+GKRVP+S FR
Sbjct: 726 PEIEEEENTTAVEDVEDMDSSEELATTEVE-PDGVSILVITTRGYGKRVPVSQFRLQNRA 784
Query: 834 RVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
G+I KF L+ VV + + ++++L++ G + R + IS Q+R A
Sbjct: 785 GKGIIATKFKPH--LSGDCVVALQVVHN---TDELMLITSRGIIIRQVISAISRQSRNAT 839
Query: 894 GVILMRLELSGKIQSASLISVT 915
GV + RL+ I + +L+ ++
Sbjct: 840 GVRVQRLDKEDAIAAVALVPLS 861
>gi|423066200|ref|ZP_17054990.1| DNA gyrase A subunit [Arthrospira platensis C1]
gi|406712242|gb|EKD07431.1| DNA gyrase A subunit [Arthrospira platensis C1]
Length = 882
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/882 (48%), Positives = 595/882 (67%), Gaps = 42/882 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM SY+ Y+MSV++GRALPD RDG KPVHRRIL+AM+ELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI+GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ +L DID DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL ELVD L ALIHNPE T EL+ Y+PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 247 AQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK+ L FLDFR +
Sbjct: 307 IVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKQYLHVFLDFRIDTI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ + +ER H+++G+++ LDNLD +I ++R A + TA L + F LSE QAD
Sbjct: 367 RRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLSEPQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ +I L ++L+ R+ IL+++EQE E+K R TP
Sbjct: 427 AILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQRHGTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E +S +L+D D+I N++ ++ ++E+GY+KRM NTF QNR T GKS K++ +
Sbjct: 487 RRTEIELEES-ELEDTDLIANEKAIILLTEQGYIKRMPVNTFEAQNRATRGKSGTKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +++F++RG+ Y +AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIPIGSRIARGVPIVQMLPIPRDEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF+ D++LVMLT GYIKK +L+ F++IR+ GIIAI L GDEL+WVR DD V
Sbjct: 606 AVGEFSNDEYLVMLTKGGYIKKTALSAFNNIRSNGIIAISLNEGDELRWVRSAKVDDSVI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER----- 793
+ S+ GM I D +R L R TRG AM+LK D++ MDI+P+ + + +
Sbjct: 666 IGSRLGMAIHFHTDDKQLRPLGRATRGVKAMKLKPDDELIGMDILPSFIVASIPKLGGEE 725
Query: 794 ------------TPEDSHSNVKGSS-----GPWLLFVSESGHGKRVPLSSFRKLPLNRVG 836
+D+ S ++ G +L ++ G+GKRVP+S FR G
Sbjct: 726 TEIEEEENTTVEEVDDTESEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKG 785
Query: 837 LIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
+I KF L+ VV + + ++++L++ G + R + IS Q+R A GV
Sbjct: 786 IIATKFKPH--LSGDCVVALQVVHN---TDELMLITSRGIIIRQVISAISRQSRNATGVR 840
Query: 897 LMRLELSGKIQSASLISVT----------EPETDLFLPSTSD 928
+ RL+ I + +L+ ++ +P TD+ L ++
Sbjct: 841 VQRLDKEDAIAAVALVPLSGEGDDTEVDVDPNTDVELQEVNN 882
>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
Length = 846
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/829 (50%), Positives = 582/829 (70%), Gaps = 18/829 (2%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KCARVVGEVLGK
Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE RL+AL+ LL
Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI+ +TV+F+ NFD SQ+EP+++P+R+P LLLNG++GIAVGMATNIPPHNL EL+D L
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
ALI NPE +EL+ +PGPDFPTGG I+G GI + Y TGRG +T+RG +E +++K
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240
Query: 333 K--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD 390
+ R VII E+PYQTNK+ L+E+IAELV +K L+GI+DIRDESDR GMRIVIEL+R A
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300
Query: 391 PSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQ 450
P +V+N+L++LT LQS+FS M+ ++ G+P + L+++L+ FLDFR +ERR R+ L +
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360
Query: 451 VKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRL 510
+ER HI+ G+++ LDNLD +I ++R A +TA A L ++F LSE QADAIL M LRRL
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQFGLSEIQADAILQMQLRRL 420
Query: 511 TMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADS 570
T LE K E + L+ +I +++L+ ++ +L LI +E+ L++R+ +PR + + D +
Sbjct: 421 TALEADKIRLEHEDLLAKITDYKDILARKERVLALITEELGVLRSRYDSPRRTEILDVEG 480
Query: 571 GQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCR 630
G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + + +A+ FI C
Sbjct: 481 G-LEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCN 539
Query: 631 AHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQF 690
HD +L FSDRG+VY+ AY++P+C+R A GTP+VQ+L + E+ITS++ VSEFA D
Sbjct: 540 DHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIVQLLPIPREEQITSLLAVSEFAEDAV 599
Query: 691 LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI- 749
LVMLT GYIK+ L+ F++IR+ G+IAI L GD L WVR D + + S+NGM I
Sbjct: 600 LVMLTSGGYIKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSLLIGSRNGMTIH 659
Query: 750 -LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP----EDSHSNVKG 804
S + +R L R RG AM L+ GD++ SMD++P L +E + E+ V
Sbjct: 660 FRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVESSSAAADEEDTEEVPP 719
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGE 863
S GPW+L S SG GKRVP+ FR +GL KF + D L + V+G
Sbjct: 720 SEGPWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFRRDGDVLVGLKVLG-------- 771
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ E+++LVS+ G + R++ + Q+R A GV L RL+ ++ L+
Sbjct: 772 AGEELLLVSEKGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVVLV 820
>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
gi|376003238|ref|ZP_09781052.1| DNA gyrase (type II topoisomerase), subunit A [Arthrospira sp. PCC
8005]
gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
gi|375328398|emb|CCE16805.1| DNA gyrase (type II topoisomerase), subunit A [Arthrospira sp. PCC
8005]
Length = 882
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/882 (48%), Positives = 594/882 (67%), Gaps = 42/882 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM SY+ Y+MSV++GRALPD RDG KPVHRRIL+AM+ELGL +PF+KC
Sbjct: 7 RIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI+GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ +L DID DTV+F NFD SQ+EP +LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 LHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL ELVD L ALIHNPE T EL+ Y+PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + + R +II E+PYQTNK+ L+EKIAE+V K L+GISDIRDESDR GMR
Sbjct: 247 AQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+ T LQ++F NM+ +++G+P+ + LK L FLDFR +
Sbjct: 307 IVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRIDTI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ + +ER H+++G+++ LDNLD +I ++R A + TA L + F LSE QAD
Sbjct: 367 RRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLSEPQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ +I L ++L+ R+ IL+++EQE E+K R TP
Sbjct: 427 AILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQRHGTP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E +S +L+D D+I N++ ++ ++E+GY+KRM NTF QNR T GKS K++ +
Sbjct: 487 RRTEIELEES-ELEDTDLIANEKAIILLTEQGYIKRMPVNTFEAQNRATRGKSGTKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +++F++RG+ Y +AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIPIGSRIARGVPIVQMLPIPRDEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V EF+ D++LVMLT GYIKK +L+ F++IR+ GIIAI L GDEL+WVR DD V
Sbjct: 606 AVGEFSNDEYLVMLTKGGYIKKTALSAFNNIRSNGIIAISLNEGDELRWVRSAKVDDSVI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER----- 793
+ S+ GM I D +R L R TRG AM+LK D++ MDI+P+ + + +
Sbjct: 666 IGSRLGMAIHFHTDDKQLRPLGRATRGVKAMKLKPDDELIGMDILPSFIVASIPKLGGEE 725
Query: 794 ------------TPEDSHSNVKGSS-----GPWLLFVSESGHGKRVPLSSFRKLPLNRVG 836
+D+ S ++ G +L ++ G+GKRVP+S FR G
Sbjct: 726 TEIEEEENTTVEEVDDTESEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKG 785
Query: 837 LIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
+I KF L+ VV + + ++++L++ G + R + IS Q+R A GV
Sbjct: 786 IIATKFKPH--LSGDCVVALQVVHN---TDELMLITSRGIIIRQVISAISRQSRNATGVR 840
Query: 897 LMRLELSGKIQSASLISVT----------EPETDLFLPSTSD 928
+ RL+ I + +L+ ++ +P TD+ L ++
Sbjct: 841 VQRLDKEDAIAAVALVPLSGEGDDTEVDVDPNTDVELQEVNN 882
>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
Length = 843
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/829 (50%), Positives = 577/829 (69%), Gaps = 18/829 (2%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KCARVVGEVLGK
Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE RL AL+ LL
Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI+ +TV+F+ NFD SQ+EP+++PAR+P LLLNG++GIAVGMATNIPPHNL EL+D L
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
ALI NPE T +EL Y+ GPDFPTGG I+G GI + Y TGRG +T+RG +E +++K
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240
Query: 333 K--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD 390
+ R VII E+PYQTNK+ L+E+IAELV +K L+GI+DIRDESDR GMRIVIEL+R A
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300
Query: 391 PSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQ 450
P +V+N+L++LT LQS+FS M+ +++G+P + L+++LQ FLDFR +ERR R+ L +
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360
Query: 451 VKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRL 510
+ER HI+ G+++ LDNLD +I ++R A ++A L ++F LSE QADAIL M LRRL
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQFGLSEVQADAILQMQLRRL 420
Query: 511 TMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADS 570
T LE K E + L+ +I +++L+ ++ + LI E+ +++R+ +PR + + D +
Sbjct: 421 TALEADKIRLEHEDLLAKITDYKDILARKERVYGLITDELGVIRSRYDSPRRTEILDVEG 480
Query: 571 GQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCR 630
G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ K + +A+ FI C
Sbjct: 481 G-LEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTKTQGEEAVRLFISCN 539
Query: 631 AHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQF 690
HD +L FSDRG+VY+ AY++P C+R A GTP+VQ+L + E+ITS++ VSEF D
Sbjct: 540 DHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIVQLLPIPREEQITSLLAVSEFTEDAV 599
Query: 691 LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI- 749
LVMLT GY+K+ L+ F++IR+ G+IAI L GD L WVR D V + S+NGM I
Sbjct: 600 LVMLTSGGYVKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSVLIGSRNGMTIH 659
Query: 750 -LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE----RTPEDSHSNVKG 804
S + +R L R RG AM L+ GD++ SMD++P L +E + ED V
Sbjct: 660 FRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVEGSSAASDEDDTEEVAP 719
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGE 863
S GPW+L S SG GKRVP+ FR +GL KF + D L + V+G
Sbjct: 720 SEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDVLVGLRVLG-------- 771
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ E+++LVS+ G + R++ + Q+R A GV L RL+ ++ L+
Sbjct: 772 AGEELLLVSERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLV 820
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 117/249 (46%), Gaps = 35/249 (14%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
D +L+ ++ GYVKR + + F N+++ G I S L DA++ + + D VL S
Sbjct: 596 EDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAIS---LEEGDALTWVRLAQPGDSVLIGS 652
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITS--IIPV--------SEFAG 687
G+ R ++ R A G V+ ++L G+++ S ++PV S A
Sbjct: 653 RNGMTIHFRLSDEELRPLGRTARG---VRAMNLRPGDQLVSMDVLPVELADRVEGSSAAS 709
Query: 688 DQ------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQLV-PGDELKWVRC 732
D+ ++++ + +G K+V ++ F + G + A++ GD L +R
Sbjct: 710 DEDDTEEVAPSEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDVLVGLRV 769
Query: 733 CTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE 792
+ + + S+ G+++ D + SR G RL GD+++ + ++P AL +D E
Sbjct: 770 LGAGEELLLVSERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLVPPALEED-E 828
Query: 793 RTPEDSHSN 801
+ ED+ S
Sbjct: 829 ESGEDASSE 837
>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
Length = 859
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/851 (49%), Positives = 589/851 (69%), Gaps = 20/851 (2%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL++ +P
Sbjct: 9 NPSERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERP 68
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++KCARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+R PLI GHGNFGS+D DP AAMRY
Sbjct: 69 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRY 128
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL++L+ LL DI+ +TV+F+ NFD SQ+EP++LPAR+P LLLNG++GIAVGMATN
Sbjct: 129 TESRLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATN 188
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGEL+D + ALI +P+ ++L+ +PGPDFPTGG I+G GI + Y GRG IT
Sbjct: 189 IPPHNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRETYTGGRGSIT 248
Query: 319 VRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
+RG +E +++K + R VII E+PYQTNK+ L+E+IAELV +K L+GI+DIRDESDR
Sbjct: 249 MRGVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDR 308
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
GMRIVIEL+R A P +V+N+LY+LT LQ++FS + ++ G+P + LK +L+ FLDFR
Sbjct: 309 DGMRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLKRMLEVFLDFR 368
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSE 496
+ERR ++ L + +ER HI++G++V L++LD +I+++R A +TA L ++ LSE
Sbjct: 369 IETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQGLVNDHGLSE 428
Query: 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556
QADAIL M LRRLT LE K E + L+ +I +++L R+ +L +IE+E+ +LK R
Sbjct: 429 IQADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDILQRRERVLSIIEEELRQLKER 488
Query: 557 FSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
+TPR + + D + G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ K
Sbjct: 489 HNTPRRTEILDLEGG-LEDIDLIANERSVVLLTENGYLKRMPVSEFESTSRGTRGKAGTK 547
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
+ +A+ FI C HD +L FSDRG+VYS AY++P +R A GTP+VQ+L + E+I
Sbjct: 548 SQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLPIPREEQI 607
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
TS++ VS F D LVMLT G+IK+ L+ FS+IR G+IAI L D L+WVR
Sbjct: 608 TSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAFSNIRANGLIAINLEDADSLRWVRLARAG 667
Query: 737 DLVAMASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
D V + S NGM I ++ D +R L R RG AM L+DGD + SMD++PA L +
Sbjct: 668 DSVLIGSINGMTIHFRINDQD-LRPLGRTARGVRAMALRDGDSLVSMDVLPAELADRIAA 726
Query: 794 TPE--DSHSNVKGSS-GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLA 849
E D S SS GPW+L + SG GKRVP+ FR +GL G KF + D L
Sbjct: 727 AGEASDGESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKFRRDGDALV 786
Query: 850 AVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSA 909
+ V+G ++E+++LVS+ G + R++ I Q+R A GV L RL+ ++
Sbjct: 787 GLCVMG--------AEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEV 838
Query: 910 SLISVTEPETD 920
L+ E ETD
Sbjct: 839 VLVP-PEAETD 848
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 35/239 (14%)
Query: 582 DEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
D L+ ++ G++KR + F N++ G I + L D++ + RA D VL S
Sbjct: 619 DVQLVMLTTGGFIKRTPLSAFSNIRANGLIAIN---LEDADSLRWVRLARAGDSVLIGSI 675
Query: 641 RGIVYSARA--YKIPECTRNAAGTPLVQILSLSDGERITS--IIPV-------------- 682
G+ R + R A G V+ ++L DG+ + S ++P
Sbjct: 676 NGMTIHFRINDQDLRPLGRTARG---VRAMALRDGDSLVSMDVLPAELADRIAAAGEASD 732
Query: 683 --SEFAGDQ---FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP----GDELKWVRCC 733
SE A ++++ T +G K+V ++ F R G+ ++ + GD L +
Sbjct: 733 GESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGL-GLRGIKFRRDGDALVGLCVM 791
Query: 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE 792
++ + + S+ G+++ D+I SR G RL GD++A + ++P D E
Sbjct: 792 GAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEVVLVPPEAETDDE 850
>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
Length = 885
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/862 (48%), Positives = 598/862 (69%), Gaps = 44/862 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVP +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AMHELGL+ +PF+KC
Sbjct: 7 RIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI+GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ L+ +L DID +TV+F NFD SQ+EP +LP+R+P L LNG+SGIAVGMATNIPPH
Sbjct: 127 LQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALIHN E T EL++++PGPDFPTG I+G GI DAY GRG IT+RG
Sbjct: 187 NLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITMRGV 246
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + + +I+ E+PYQTNK+ L+EKIAELV +K ++GISDIRDESDR+GMR
Sbjct: 247 ATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRNGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F N++ +++ +P+ + LK+ L+ FL+FR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRVETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + +ER H+++G+++ LDNLD +I+++R A A L + + LSE Q+D
Sbjct: 367 TRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYGLSEVQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L+ +I L+++L+ R+ IL++IE E IE+K R +TP
Sbjct: 427 AILQMQLRRLTALEAQKIQKEHEELLLKIADLQDILAKRERILEIIETEAIEIKERHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++E A+ G+LDD D+I N++ ++ ++E+GY+KRM N+F Q+R T GKS K++ +
Sbjct: 487 RRTVIELAE-GELDDTDLIANEKAIILLTEQGYIKRMPVNSFEAQSRATRGKSGTKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD +L+FS RG+VY AY+IP +R A G P+VQ+L + E++TSI+
Sbjct: 546 DVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQMLPIPRDEKVTSIV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D++LVMLT GYIKK SL+ F++IR+ G+IAI L GD L+WVR DD +
Sbjct: 606 AVSEFTDDKYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGEGDSLRWVRRAKVDDSLI 665
Query: 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------- 791
+ S GM I D +R L RNTRG +M+L GD++ SMDI+P+++ +++
Sbjct: 666 IGSSYGMAIHFRTDNKQLRPLGRNTRGVKSMKLIKGDELISMDILPSSIVENIADIDEEN 725
Query: 792 -----------------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR 834
+ E + +N GS W+L ++ +G+GKRVP+S F
Sbjct: 726 LELEEEELEIETDEIEEVESDEFTATNNIGS---WVLVITTNGYGKRVPVSQFTLQNRGG 782
Query: 835 VGLIG----YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G I K +D++AA+ VV S E++++++ G + R + ISIQ+R
Sbjct: 783 KGRIATKFKQKKKKQDQVAALRVVNES--------EELMIITAKGIIIRQAIDAISIQSR 834
Query: 891 YARGVILMRLELSGKIQSASLI 912
A GV + +L+ + I +L+
Sbjct: 835 SATGVRVQKLDDADAIAEVALV 856
>gi|334116593|ref|ZP_08490685.1| DNA gyrase, A subunit [Microcoleus vaginatus FGP-2]
gi|333461413|gb|EGK90018.1| DNA gyrase, A subunit [Microcoleus vaginatus FGP-2]
Length = 903
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/709 (54%), Positives = 536/709 (75%), Gaps = 5/709 (0%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RIIPTDLGNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R LI GHGNFGS+D DP AAMRYTECR
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRERLINGHGNFGSVDNDPPAAMRYTECR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ +L DID +TV+F NFD SQ+EP +LPAR+P +LLNG+SGIAVGMATNIPPH
Sbjct: 127 LTALTSDSMLRDIDSETVDFGDNFDGSQQEPLVLPARIPQILLNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALIHNP T EL++Y+PGPDFPTGG I+G GI DAY TGRG IT+RG
Sbjct: 187 NLGEIIDGLVALIHNPAITDLELMQYIPGPDFPTGGQILGRGGIRDAYTTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + + +II E+PYQTNK+ L+EKIAELV +K LDGISDIRDESDR GMR
Sbjct: 247 AGIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAELVNDKRLDGISDIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+LY+ T LQ++F NM+ +++G+P+ + L + L FLDFR +
Sbjct: 307 IVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLTLSQFLNVFLDFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L + +ER H+++G+++ LDNLD +I ++R A ++ A L D + LSE+Q+D
Sbjct: 367 TRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRAAADSAAAKQELMDNYGLSEQQSD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE +K E + L +I LE++L+ R+ IL++ E E +E++ + +TP
Sbjct: 427 AILQMQLRRLTALEAQKIQQEHEELRSKIADLEDILARRERILEIAEFEAVEIQTKIATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R S++E A+ G++D+ D+I N++ ++ I+E+GY+KRM +TF Q+R T GK+ K++ +
Sbjct: 487 RRSVIEHAE-GEIDERDLIANEQAIILITEQGYIKRMPVSTFEAQSRATRGKAGAKMKED 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS +AY+IP C+R A GTP+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDSVLFFSDRGVVYSVKAYQIPICSRTARGTPVVQLLPIPIEEKITSMV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+EF +++LVMLT GYIKK +L+ F +IRT G+IAI L GD+L+WVR D +
Sbjct: 606 SVTEFTSEEYLVMLTRGGYIKKTALSAFGNIRTNGLIAISLEEGDQLRWVRRAKVGDSII 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
+ ++ GM I ++ + +R + R TRG +M+L+ GD++ SMDI+P+++
Sbjct: 666 IGTRQGMAIHFRTNHEQLRPVGRATRGVKSMKLRSGDELISMDILPSSI 714
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE---DRLAAVFVVGFSLAED 861
S P +L ++ +G+GKRVP+S FR GL KF ++ D++AA+ +V
Sbjct: 783 SEVPSVLVITTNGYGKRVPVSQFRLQRRAGKGLTATKFKSKKGKDQVAALRIVN------ 836
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
D+++++++ G + R V IS Q+R A GV + RL+ I + +L+
Sbjct: 837 --EDDELMIITNRGIIIRQAVSAISTQSRTATGVRVQRLDEDDSIVAVALV 885
>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
Length = 875
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/836 (50%), Positives = 580/836 (69%), Gaps = 15/836 (1%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ L ALI NP+ T QEL+ +PGPDFPTGG I+G GI + Y GRG IT+RG
Sbjct: 198 NLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREGIRETYLGGRGSITMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII E+PYQTNK+ L+E+IAELV +K L+GISDIRDESDR GMR
Sbjct: 258 AAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LTALQS+FS M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L+D LS+ QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I+ E+ +L +R++TP
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDRYTTP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-GGGLEDIDLIANERSVVLVTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS+I
Sbjct: 557 EAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLI 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L+WVR D V
Sbjct: 617 PVSEFNDDMDLLMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALRWVRLAVPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S GM I S + +R L R RG +M L++GD + SMD++P L + ++ ED
Sbjct: 677 IGSNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVELADRIAQSAEDD 736
Query: 799 HSNVKGSS-GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGF 856
+ S GPW+L S SG GKRVP++ FR +GL KF + +D L + V+G
Sbjct: 737 EEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDALVGLRVLG- 795
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ E+V+LVS+ G + R I Q+R A GV L RL+ ++ L+
Sbjct: 796 -------AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLV 844
>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9301]
Length = 865
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/829 (49%), Positives = 574/829 (69%), Gaps = 19/829 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I+NP +EL E + GPDFPTGG I+G GI + ++TGRG IT+RG
Sbjct: 198 NLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGRGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + S ++++ VII E+P+QTNK+ L+E+IA+LV K L+GISDIRDESDR GMR
Sbjct: 258 ANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++LT LQ++FS N++ ++ G+P + L+++L FLDFR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + +ER HIV+G+++ LD +D +I ++R A + +A L+++ KLS QAD
Sbjct: 378 RRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNDHKLSSIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L ++I +++L+S++ I ++I +E+ ++ RFS+P
Sbjct: 438 AILQMQLRRLTALEADKIKGEHNDLTQKINLYQQILNSKERIFEIILEELNKIDERFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I N+ ++ ++E GY+KRM N F +RG+ GK+ K + +
Sbjct: 498 RKTEILDL-GGGLDDIDLIANERSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKED 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSD+G+ Y+ AY++P +R A GTP VQ+L + E+ITSI+
Sbjct: 557 DDVKLFISCNDHDTLLLFSDKGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSIV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D +L+MLT G+IK+ +L+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVDSFVDDSYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL---ERTP 795
+ S+ GM I DI +R L R RG +M L++GD + SMD++ + L L E
Sbjct: 677 IGSKTGMAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLADQLAKIEYPK 736
Query: 796 EDSHSNVK--GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVF 852
ED NV+ S GPW+L S G GKRVP++ FR +GL KF + D+L ++
Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKYDQLVSLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
V+G E+++LV++ G + R IS Q+R A GV L RL+
Sbjct: 797 VLG--------EGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLD 837
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 107/238 (44%), Gaps = 35/238 (14%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
+D +D LL +++ G++KR + F+ +++ G I + L DA++ + + D
Sbjct: 618 VDSFVDDSYLLMLTKAGFIKRTALSAFSKIRSNGLIAIN---LEDGDALTWVRLSKEGDS 674
Query: 635 VLYFSDRGIVYSAR--AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ--- 689
VL S G+ R ++ R A G V+ ++L +G+ + S+ ++ DQ
Sbjct: 675 VLIGSKTGMAIHFRLDINELRPLGRTARG---VKSMNLREGDNLVSMDVLTSNLADQLAK 731
Query: 690 --------------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDE 726
++++ + G K+V + F + G + AI+ + D+
Sbjct: 732 IEYPKEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKYDQ 791
Query: 727 LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
L ++ + + + ++ G+++ ++ D I SR G RL DGD ++ + ++P
Sbjct: 792 LVSLKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLDDGDHLSEVVLVP 849
>gi|427704488|ref|YP_007047710.1| DNA gyrase subunit A [Cyanobium gracile PCC 6307]
gi|427347656|gb|AFY30369.1| DNA gyrase, A subunit [Cyanobium gracile PCC 6307]
Length = 896
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/840 (49%), Positives = 578/840 (68%), Gaps = 19/840 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+++ NFD SQ+EP+++PAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L ALI +PE + L+ +PGPDFPTGG I+G GI + Y TGRG IT+RG
Sbjct: 198 NLTELIDGLLALIDDPEIEDRALMAIIPGPDFPTGGQILGRRGIRETYTTGRGSITMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++K + R VII E+PYQTNK+ L+E+IAELV +K L+GI+DIRDESDR GMR
Sbjct: 258 ASIETVEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A P +V+N+L++LT LQ++FS M+ ++ G+P + L +L+ FL+FR +
Sbjct: 318 IVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLSRMLRVFLEFRIETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI++G+++ LD LD +I ++R AP +TA L++ LSE QAD
Sbjct: 378 ERRTRYFLRKAEERDHILQGLLLALDQLDPIIALIRAAPDTATARVQLQERHGLSEIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L+ +I +++L ++ +L LI +E+ L+ R+ +P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHDDLVAKIADYKDILGRKERVLGLIREELQVLRTRYDSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D + G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDLEGG-LEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+VYS AY++P C+R+A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFISCNDHDALLLFSDRGVVYSIPAYRVPICSRSAKGTPIVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VS F D LVMLT GYIK+ L+ FS+IR+ G+IAI L GD L+WVR D V
Sbjct: 617 AVSAFDDDVQLVMLTSGGYIKRTRLSAFSNIRSNGLIAISLEDGDALRWVRLALPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S GM I S + +R L R+ RG AM L+ GD++ SMD++ A L + T E
Sbjct: 677 IGSLKGMTIHFRLSDEELRPLGRSARGVRAMNLRPGDELVSMDVLTAELADRVASTAETG 736
Query: 799 HSNVKG-----SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVF 852
+ +G S GPW+L S SG GKRVP+ FR +GL KF + D L +
Sbjct: 737 LDDEEGDEVAPSEGPWVLVASASGLGKRVPVDQFRLQRRAGMGLRAIKFRRDGDVLVGLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
V+G + E+++LVS+ G + R+K I Q+R A GV L +L+ ++ L+
Sbjct: 797 VLG--------AGEELLLVSERGVIVRMKADAIPQQSRAATGVRLQKLDAGDRLTEVVLV 848
>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
Length = 865
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/829 (49%), Positives = 574/829 (69%), Gaps = 19/829 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I NP +EL E + GPDFPTGG I+G GI + ++TG+G IT+RG
Sbjct: 198 NLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGKGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + S ++++ VII E+P+QTNK+ L+E+IA+LV K L+GISDIRDESDR GMR
Sbjct: 258 ANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++LT LQ++FS N++ +++G+P + L+++L FLDFR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTTLSLRKMLDVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + +ER HIV+G+++ LD +D +I ++R A + +A L++E KLS Q+D
Sbjct: 378 RRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEHKLSSIQSD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K +E L +I +++L+S++ I ++I +E+ ++ +FS+P
Sbjct: 438 AILQMQLRRLTALEADKIKEEHNELTRKINFYQQILNSKERIFEIILEELNQIDGKFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I ND ++ ++E GY+KRM N F +RG+ GK+ K + +
Sbjct: 498 RKTEILDL-GGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKED 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITS++
Sbjct: 557 DDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D++L+MLT G+IK+ +L+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL---ERTP 795
+ S+ G+ I DI +R L R RG +M L++GD + SMD++ + L L E
Sbjct: 677 IGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT 736
Query: 796 EDSHSNVK--GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVF 852
ED NV+ S GPW+L S G GKRVP++ FR +GL KF +D+L +
Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
V+G E+++LV++ G + R IS Q+R A GV L RL+
Sbjct: 797 VLG--------EGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLD 837
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 107/238 (44%), Gaps = 35/238 (14%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
+D +D LL +++ G++KR + F+ +++ G I + L DA++ + + D
Sbjct: 618 VDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAIN---LEDGDALTWVRLSKEGDS 674
Query: 635 VLYFSDRGIVYSAR--AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ--- 689
VL S GI R ++ R A G V+ ++L +G+ + S+ ++ DQ
Sbjct: 675 VLIGSKTGIAIHFRLDINELRPLGRTARG---VKSMNLREGDNLVSMDVLTSNLVDQLAK 731
Query: 690 --------------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDE 726
++++ + G K+V + F + G + AI+ + D+
Sbjct: 732 IEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQ 791
Query: 727 LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
L ++ + + + ++ G+++ ++ D I SR G RL DGD ++ + ++P
Sbjct: 792 LVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVP 849
>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9215]
Length = 865
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/829 (49%), Positives = 573/829 (69%), Gaps = 19/829 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I NP +EL E + GPDFPTGG I+G GI + ++TG+G IT+RG
Sbjct: 198 NLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + S ++++ VII E+P+QTNK+ L+E+IA+LV K L+GISDIRDESDR GMR
Sbjct: 258 ANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR + P +V+N+L++LT LQ++FS N++ ++ G+P + L+++L FLDFR +
Sbjct: 318 IVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + +ER HIV+G+++ LD +D +I ++R A + +A L++E KLS Q+D
Sbjct: 378 RRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEHKLSSIQSD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K +E L +I +++L+S++ I ++I +E+ ++ +FS+P
Sbjct: 438 AILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I ND ++ ++E GY+KRM N F +RG+ GK+ K + +
Sbjct: 498 RKTEILDL-GGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKED 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITS++
Sbjct: 557 DDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D++L+MLT G+IK+ +L+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL---ERTP 795
+ S+ G+ I DI +R L R RG +M L++GD + SMD++ + L L E
Sbjct: 677 IGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT 736
Query: 796 EDSHSNVK--GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVF 852
ED NV+ S GPW+L S G GKRVP++ FR +GL KF +D+L +
Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
V+G E+++LV++ G + R IS Q+R A GV L RL+
Sbjct: 797 VLG--------EGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLD 837
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 107/238 (44%), Gaps = 35/238 (14%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
+D +D LL +++ G++KR + F+ +++ G I + L DA++ + + D
Sbjct: 618 VDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAIN---LEDGDALTWVRLSKEGDS 674
Query: 635 VLYFSDRGIVYSAR--AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ--- 689
VL S GI R ++ R A G V+ ++L +G+ + S+ ++ DQ
Sbjct: 675 VLIGSKTGIAIHFRLDINELRPLGRTARG---VKSMNLREGDNLVSMDVLTSNLVDQLAK 731
Query: 690 --------------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDE 726
++++ + G K+V + F + G + AI+ + D+
Sbjct: 732 IEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQ 791
Query: 727 LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
L ++ + + + ++ G+++ ++ D I SR G RL DGD ++ + ++P
Sbjct: 792 LVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVP 849
>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
Length = 876
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/863 (48%), Positives = 590/863 (68%), Gaps = 18/863 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV++V NFD SQ+EP++LP+R+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+ L ALI NPE + QEL+ +PGPDFPTGG I+G GI + Y +GRG +T+RG
Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 257
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E L+ + R VII +PYQTNK+ ++E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+LT LQS+FS +M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L++ LSE QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHGLSEVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I+ E+ +L++R + P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELAQLRDRHAIP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDLGGG-LDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR + D V
Sbjct: 617 AVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVSGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I S D +R L R RG +M L+DGD + SMD++P L + ++ +D
Sbjct: 677 IGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSGDDD 736
Query: 799 HSNVK---GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVV 854
+ + S GPW+L S SG GKRVP++ FR +GL KF + D L + V+
Sbjct: 737 SDDDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADALVGLRVL 796
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G + E+V+LVS+ G + R I Q+R A GV L RL+ ++ ++
Sbjct: 797 G--------AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVP- 847
Query: 915 TEPETDLFLPSTSDKLATESGVS 937
E E+D +++ E+ VS
Sbjct: 848 PEAESDDATEGEGEEVTAETAVS 870
>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
Length = 874
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/835 (49%), Positives = 574/835 (68%), Gaps = 16/835 (1%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ+FS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L ALI NPE T QEL++ +PGPDFPTGG I+G GI + Y GRG +T+RG
Sbjct: 198 NLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII E+PYQTNK+ L+E+IAELV +K L+GISDIRDESDR GMR
Sbjct: 258 ANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L+D LS+ QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I+ E+ +L+ R+ T
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQERYPTR 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G L DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-GGGLSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ FI C HD ++ FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E IT++I
Sbjct: 557 DAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLI 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D LVMLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 PVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I S + +R L R RG +M L+DGD + SMD++P L + + ED
Sbjct: 677 IGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADQVAASAEDE 736
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFS 857
S GPW+L S SG GKRVP++ FR +GL KF + D L + V+G
Sbjct: 737 ED--AASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDELVGLSVLG-- 792
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ E+++LVS+ G + R I Q+R A GV L +L+ ++ L+
Sbjct: 793 ------AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLV 841
>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
Length = 878
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/838 (49%), Positives = 579/838 (69%), Gaps = 17/838 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 14 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 74 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV++V NFD SQ+EP++LP+R+P LLLNG++GIAVGMATNIPPH
Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+ L ALI NPE + QEL+ +PGPDFPTGG I+G GI + Y +GRG +T+RG
Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 253
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E L+ + R VII +PYQTNK+ ++E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 254 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 313
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+LY+LT LQS+FS +M+ +++G+P + L+++L+ FLDFR +
Sbjct: 314 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 373
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L++ LS+ QAD
Sbjct: 374 ERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSDVQAD 433
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I+ E+ +L++R + P
Sbjct: 434 AILQMQLRRLTALEADKIRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLRDRHAIP 493
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 494 RRTEILDLGGG-LDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 552
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 553 EAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLL 612
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 613 AVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVPGDSVL 672
Query: 741 MASQNGMVILS--SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-D 797
+ S+ GM I S D +R L R RG +M L+DGD + SMD++P L + ++ E D
Sbjct: 673 IGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSSEDD 732
Query: 798 SHSNVKG--SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVV 854
S + G S GPW+L S SG GKRVP++ FR +GL KF E D L + V+
Sbjct: 733 SGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVL 792
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
G + E+V+LVS+ G + R I Q+R A GV L RL+ ++ L+
Sbjct: 793 G--------AGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLV 842
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D LL +++ G++KR + + F N+++ G I ++G L DA++ + D VL S
Sbjct: 619 DDTDLLMLTQGGFIKRTRLSAFSNIRSNGLI--AIG-LEEGDALTWVRLAVPGDSVLIGS 675
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITS--IIPVS------------ 683
G+ R ++ R A G V+ ++L DG+ + S ++PV
Sbjct: 676 RAGMTIHFRLSDDELRPLGRTARG---VRSMNLRDGDALVSMDVLPVELADRVAQSSEDD 732
Query: 684 ---EFAGD----QFLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKWVRCC 733
+ GD ++++ + +G K+V + F + G + A++ D L +R
Sbjct: 733 SGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVL 792
Query: 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ V + S+ G+++ +S D I SR G RL GD+++ + ++P
Sbjct: 793 GAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLVP 843
>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9303]
Length = 875
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/846 (50%), Positives = 576/846 (68%), Gaps = 19/846 (2%)
Query: 77 GPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
GP S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S
Sbjct: 11 GPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTS 70
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAA 195
+P++KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS++ PLI GHGNFGS+D DP AA
Sbjct: 71 DRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAA 130
Query: 196 MRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
MRYTE RL++L+ LL DI+ +TV++ NFD SQ+EP +LPAR+P LLLNG+SGIAVGM
Sbjct: 131 MRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGM 190
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNL EL+D L ALI NPE + EL+ +PGPDFPTGG I+G GI + Y TGRG
Sbjct: 191 ATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRG 250
Query: 316 RITVRGKTEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
+T+RG +E ++ + R VII E+PYQTNK+ L+E+IAE+V +K L+GISDIRDE
Sbjct: 251 SVTMRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDE 310
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
SDR GMRIV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+++LQ FL
Sbjct: 311 SDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFL 370
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
DFR VERR R+ L + +ER HI+ G+++ LD LD +I ++R A +TA L++
Sbjct: 371 DFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG 430
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
L+E QADAIL M LRRLT LE K E + L+ +I +++L R+ + LIE E+ +L
Sbjct: 431 LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFALIEDELAKL 490
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
+ + PR + + D G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+
Sbjct: 491 REKHCLPRRTEILDLGGG-LEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKA 549
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
+ + +A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L +
Sbjct: 550 GTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPRE 609
Query: 674 ERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC 733
E ITS++ V F D L+MLT G+IK+ SL+ FS IR+ G+IAI L GD L WVR
Sbjct: 610 EAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLA 669
Query: 734 TNDDLVAMASQNGMVI-LSSCD-IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL---- 787
D V +AS+ GM I CD +R L R RG AM L+ GD + SMD++P L
Sbjct: 670 VPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELADQV 729
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
K LE P+DS V S GPW+L S SG GKRVP++ FR +GL KF E D
Sbjct: 730 AKSLEDDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGD 789
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
L + V+G+ E+++LVS+ G + R I Q+R A GV L RL+ ++
Sbjct: 790 ELVGLRVLGYG--------EELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRL 841
Query: 907 QSASLI 912
L+
Sbjct: 842 SEVVLV 847
>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. AS9601]
Length = 865
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/857 (48%), Positives = 576/857 (67%), Gaps = 21/857 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I NP +EL E + GPDFPTGG I+G GI + ++TGRG IT+RG
Sbjct: 198 NLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRDGIKETFKTGRGSITMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + S S+ + VII E+P+QTNK+ L+E+IA+LV K L+GISDIRDESDR GMR
Sbjct: 258 ANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++LT LQ++FS N++ ++ G+P + L+++L FLDFR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + +ER HIV G+++ L +D +I ++R A +A L+ + +LS QA+
Sbjct: 378 RRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVSARENLQADHELSATQAE 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I +++L+S++ I ++I +E+ ++ RFS+P
Sbjct: 438 AILQMQLRRLTALEADKIKGEHDELTRKINLYKQILNSKERIFEIILEELNKIDERFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I ND ++ ++E GY+KRM N F +RG+ GK+ K + +
Sbjct: 498 RKTEILDL-GGGLDDIDLIANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQED 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITS++
Sbjct: 557 DEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D +L+MLT G+IK+ SL+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSREGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-- 796
+ S+ GM I DI +R L R RG +M L+ GD + SMD++ + L L ++ +
Sbjct: 677 IGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSMDVLTSDLVDQLAKSEDIT 736
Query: 797 ---DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVF 852
D + V S GPW+L S G GKRVP++ FR +GL KF +D L +
Sbjct: 737 KESDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIKDDVLVCLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
V+G E+++ V++ G + R IS Q+R A GV L RL++ + + ++
Sbjct: 797 VLG--------EGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDMGDHL--SEVV 846
Query: 913 SVTEPETDLFLPSTSDK 929
V +T+ S SDK
Sbjct: 847 LVPHEQTEEADQSNSDK 863
>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
Length = 886
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/853 (49%), Positives = 581/853 (68%), Gaps = 26/853 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV++ NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L ALI+NPE + QEL+ +PGPDFPTGG I+G GI + Y +GRG +T+RG
Sbjct: 198 NLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAGIRETYLSGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
EVE +++ + R VII +PYQTNK+ L+E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L+D LS QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLSAVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ +L LI++E+++L+ R S P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRERHSVP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D +G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-AGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVL 676
Query: 741 MASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL------ 791
+ S+ GM I L+ + +R L R RG +M L+ GD + SMD++PA L +
Sbjct: 677 IGSKAGMTIHFRLADGE-LRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADD 735
Query: 792 ---ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DR 847
D + GPW+L S SG GKRVP++ FR +GL KF + D
Sbjct: 736 AGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADE 795
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
L + V+G + E+++LVS+ G + R I Q+R A GV L RL+ ++
Sbjct: 796 LVGLRVLG--------AGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLA 847
Query: 908 SASLISVTEPETD 920
L+ E ETD
Sbjct: 848 DVVLVP-PEAETD 859
>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
Length = 883
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/865 (47%), Positives = 588/865 (67%), Gaps = 30/865 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +
Sbjct: 7 PNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDR 66
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P++KCARVVGEVLGK+HPHGD AVYD+LVRMAQDF++R PL+ GHGNFGS+D DP AAMR
Sbjct: 67 PYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVDGDPPAAMR 126
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL+AL+ LL DI+ +TV+F NFD SQ+EP+++PAR+P LLLNG++GIAVGMAT
Sbjct: 127 YTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMAT 186
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPHNL EL+D L ALI +P+ ++L+ +PGPDFPTGG I+G GI + Y TGRG +
Sbjct: 187 NIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRETYTTGRGSV 246
Query: 318 TVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
T+RG VE +++K + R +II E+P+QTNK+ L+E+IAELV +K LDGISDIRDESD
Sbjct: 247 TMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDGISDIRDESD 306
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R GMRIVIEL+R A P +V+N+L++LT LQ++FS M+ ++ G+P + L+++L+ FL+F
Sbjct: 307 RDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLRKMLEVFLEF 366
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
R +ERR RF L + +ER HI+ G+++ LD+LD +I ++R A ++A + L +F L+
Sbjct: 367 RVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARSELVAQFGLT 426
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
E QADAIL M LRRLT LE K E + L+ +I +++L+ R+ + +I E+ ++N
Sbjct: 427 EIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARRERVFGIITDELGAIRN 486
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
R+ +PR + + D + G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+
Sbjct: 487 RYLSPRRTEILDLEGG-LEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGT 545
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
+ + +A+ FI C HD++L FSDRG+VY+ AY++P C+R A GTP+VQ+L + E+
Sbjct: 546 RSQGEEAVKLFISCNDHDNLLLFSDRGVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQ 605
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
ITS++ VS F+ + LVMLT GYIK+ L+ FS+IR+ G+IAI L GD+L+WVR
Sbjct: 606 ITSLLAVSAFSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRLALP 665
Query: 736 DDLVAMASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL-- 791
D V + S GM I + + +R L R RG AM L+ GD++ SMD++ A L +
Sbjct: 666 GDSVLIGSLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELADRVAS 725
Query: 792 --------ERTPED------SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
E PE+ + V S GPW+L S +G GKRVP+ FR +GL
Sbjct: 726 SSDSAGLEESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGL 785
Query: 838 IGYKFSAE-DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
KF + D L + V+G + E+V+LVS+ G + R + I Q+R A GV
Sbjct: 786 RAIKFRRDGDTLVGLKVLG--------AGEEVLLVSERGVIVRTEADAIPQQSRAATGVR 837
Query: 897 LMRLELSGKIQSASLISVTEPETDL 921
L RL+ ++ L+ E +L
Sbjct: 838 LQRLDAGDRLVEVVLVPPAASEDEL 862
>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
Length = 865
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/835 (49%), Positives = 573/835 (68%), Gaps = 16/835 (1%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L ALI NPE T QEL++ +PGPDFPTGG I+G GI + Y GRG +T+RG
Sbjct: 198 NLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII E+PYQTNK+ L+E+IAELV +K L+GISDIRDESDR GMR
Sbjct: 258 ANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L+D LS+ QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I+ E+ +L+ R+ TP
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYPTP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G L DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDLGGG-LSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
DA+ FI C HD ++ FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E IT++I
Sbjct: 557 DAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLI 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PVSEF+ D LVMLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 PVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I S + +R L R RG +M L+D D + SMD++P L + +
Sbjct: 677 IGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDADALVSMDVLPVELADQVAAS--AD 734
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFS 857
+ S GPW+L S SG GKRVP++ FR +GL KF + D L + V+G
Sbjct: 735 DEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLSVLG-- 792
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ E+++LVS+ G + R I Q+R A GV L +L+ ++ L+
Sbjct: 793 ------AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLV 841
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 35/245 (14%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D L+ ++ G++KR + + F N+++ G I + L DA++ + D VL S
Sbjct: 623 DDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAIN---LEEGDALTWVRLAVPGDSVLIGS 679
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITS--IIPVSEFAGDQ------ 689
G+ R ++ R A G V+ ++L D + + S ++PV E A DQ
Sbjct: 680 KAGMTIHFRLSDEELRPLGRTARG---VRSMNLRDADALVSMDVLPV-ELA-DQVAASAD 734
Query: 690 ----------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKWVRCCTND 736
++++ + +G K+V + F + G + A++ DEL +
Sbjct: 735 DEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLSVLGAG 794
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + + S+ G+++ +S D I SR G +L GD++ + ++P D + +
Sbjct: 795 EELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDD---SAD 851
Query: 797 DSHSN 801
D+ SN
Sbjct: 852 DTESN 856
>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9313]
Length = 875
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/846 (49%), Positives = 576/846 (68%), Gaps = 19/846 (2%)
Query: 77 GPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
GP S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S
Sbjct: 11 GPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTS 70
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAA 195
+P++KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS++ PLI GHGNFGS+D DP AA
Sbjct: 71 DRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAA 130
Query: 196 MRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
MRYTE RL++L+ LL DI+ +TV++ NFD SQ+EP +LPAR+P LLLNG+SGIAVGM
Sbjct: 131 MRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGM 190
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNL EL+D L ALI NPE + EL+ +PGPDFPTGG I+G GI + Y TGRG
Sbjct: 191 ATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRG 250
Query: 316 RITVRGKTEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
+T+RG +E ++ ++ R VII E+PYQTNK+ L+E+IAE+V +K L+GISDIRDE
Sbjct: 251 SVTMRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDE 310
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
SDR GMRIV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+++LQ FL
Sbjct: 311 SDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFL 370
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
DFR VERR R+ L + +ER HI+ G+++ LD LD +I ++R A +TA L++
Sbjct: 371 DFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG 430
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
L+E QADAIL M LRRLT LE K E + L+ +I +++L R+ + LIE E+ +L
Sbjct: 431 LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKL 490
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
+ + PR + + D G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+
Sbjct: 491 REKHCLPRRTEILDLGGG-LEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKA 549
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
+ + +A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L +
Sbjct: 550 GTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPRE 609
Query: 674 ERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC 733
E ITS++ V F D L+MLT G+IK+ SL+ FS IR+ G+IAI L GD L WVR
Sbjct: 610 EAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLA 669
Query: 734 TNDDLVAMASQNGMVI-LSSCD-IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL---- 787
D V +AS+ GM I CD +R L R RG AM L+ GD + SMD++P L
Sbjct: 670 VPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELADQV 729
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
K LE ++S V S GPW+L S SG GKRVP++ FR +GL KF E D
Sbjct: 730 AKSLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGD 789
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
L + V+G+ E+++LVS+ G + R I Q+R A GV L RL+ ++
Sbjct: 790 ELVGLRVLGYG--------EELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRL 841
Query: 907 QSASLI 912
L+
Sbjct: 842 SEVVLV 847
>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
Length = 892
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/849 (49%), Positives = 582/849 (68%), Gaps = 22/849 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+ L ALI NPE T QEL+ +PGPDFPTGG I+G GI + Y TGRG +T+RG
Sbjct: 198 NLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSGIRETYLTGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R V+I +PYQTNK+ ++E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+V+EL+R A P +V+N+LY+LT LQS+FS +M+ +++ +P + L+++L+ FL+FR +
Sbjct: 318 VVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILLTLRKMLEVFLEFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L++ LS QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHGLSAVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +IE E+ +L++R + P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRDRHAVP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D +G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-AGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVSYAVPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT GYIK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVPGDSVL 676
Query: 741 MASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT-PE 796
+ S+ GM I LS + +R L R RG +M L++GD + SMD++PA L + + E
Sbjct: 677 IGSRAGMTIHFRLSDNE-LRPLGRTARGVRSMNLREGDSLVSMDVLPAELADQIAASVDE 735
Query: 797 DSHSNVKGSS----GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAV 851
D + G S GPW+L S SG GKRVP++ FR +GL KF + D L +
Sbjct: 736 DDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGL 795
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
V+G + E+++LVS+ G + R I Q+R A GV L RL+ ++ L
Sbjct: 796 RVLG--------AGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVL 847
Query: 912 ISVTEPETD 920
+ E ETD
Sbjct: 848 VP-PEAETD 855
>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
Length = 876
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/853 (49%), Positives = 582/853 (68%), Gaps = 26/853 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV++ NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L ALI+NPE + QEL+ +PGPDFPTGG I+G GI + Y +GRG +T+RG
Sbjct: 198 NLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTGIRETYLSGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
EVE +++ + R VII +PYQTNK+ L+E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L+D LS QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLSAVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ +L +I++E+ +L+ R S P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRERHSVP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D +G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-AGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVL 676
Query: 741 MASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT--- 794
+ S+ GM I L+ + +R L R RG +M L+ GD + SMD++PA L + +
Sbjct: 677 IGSKAGMTIHFRLADGE-LRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADD 735
Query: 795 ------PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DR 847
D + GPW+L S SG GKRVP++ FR +GL KF + D
Sbjct: 736 VGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADE 795
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
L + V+G + E+++LVS+ G + R I Q+R A GV L RL+ ++
Sbjct: 796 LVGLRVLG--------AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLA 847
Query: 908 SASLISVTEPETD 920
L+ E ETD
Sbjct: 848 DVVLVP-PEAETD 859
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 44/261 (16%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D LL +++ G++KR + + F N+++ G I ++G L DA++ + D VL S
Sbjct: 623 DDTDLLMLTQGGFIKRTRLSAFSNIRSNGLI--AIG-LEDGDALTWVRLSIPGDSVLIGS 679
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ-------- 689
G+ R ++ R A G V+ ++L G+ + S+ + DQ
Sbjct: 680 KAGMTIHFRLADGELRPLGRTARG---VRSMNLRKGDSLVSMDVLPAELADQIAASADDV 736
Query: 690 -------------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDEL 727
++++ + +G K+V + F + G + A++ DEL
Sbjct: 737 GDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADEL 796
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
+R + + + S+ G+++ +S D I SR G RL GD++A + ++P
Sbjct: 797 VGLRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEA 856
Query: 788 HKDLERTPEDSHSNVKGSSGP 808
D +D+ ++ + SS P
Sbjct: 857 ETD-----DDNEASAEESSEP 872
>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
Length = 863
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/840 (48%), Positives = 571/840 (67%), Gaps = 19/840 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I+NP +EL E + GPDFPTGG I+G GI + ++TGRG IT+RG
Sbjct: 198 NLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDGIRETFKTGRGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E + S ++++ VII E+P+QTNK+ L+E+IA+LV + L+GISDIRDESDR GMR
Sbjct: 258 ANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++LT LQ++FS N++ ++ G+P + L+ +L FLDFR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRRMLDVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + +ER HIV+G+++ LD +D +I ++R A +A L+ + +LS QA+
Sbjct: 378 RRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAREKLQTDHELSSTQAE 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L ++I + +++L+S++ I ++I +E+ ++ RFS+P
Sbjct: 438 AILQMQLRRLTALEADKIKAEHDELTKKINQYQQILNSKERIFEIILEELNKIDERFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G LDDID+I ND ++ ++E GY+KRM N F +RG+ GK+ K + +
Sbjct: 498 RKTEILDLGGG-LDDIDLIANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQGD 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITS++
Sbjct: 557 DEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D +L+MLT +G+IK+ SL+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVDSFDNDCYLLMLTKSGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-- 796
+ S+ G+ I DI +R L R RG +M LK GD + SMD++ + L L + +
Sbjct: 677 IGSRTGIAIHFRLDINELRPLGRTARGVKSMNLKKGDNLVSMDVLTSDLVDKLAKIDDLN 736
Query: 797 ---DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVF 852
+ + V S GPW+L S G GKRVP++ FR +GL KF +D L +
Sbjct: 737 KEIEENIEVNSSDGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIQDDVLVCLK 796
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
V+G E+++ V++ G + R IS Q+R A GV L RL+ + L+
Sbjct: 797 VLG--------EGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDEGDHLSEVVLV 848
>gi|352093610|ref|ZP_08954781.1| DNA gyrase, A subunit [Synechococcus sp. WH 8016]
gi|351679950|gb|EHA63082.1| DNA gyrase, A subunit [Synechococcus sp. WH 8016]
Length = 868
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/849 (48%), Positives = 579/849 (68%), Gaps = 21/849 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F NFD SQ+EP++LP+R+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+ L ALI NPE T QEL+ +PGPDFPTGG I+G GI + Y TGRG +T+RG
Sbjct: 198 NLGELITGLLALISNPEITDQELMALIPGPDFPTGGQILGRSGIRETYLTGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII +PYQTNK+ ++E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AGIETIEAPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+V+EL+R A P +V+N+LY+LT LQS+FS +M+ +++ +P + L+++L+ FL+FR +
Sbjct: 318 VVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILLTLRKMLEVFLEFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L++ LS QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHGLSAVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +IE E+ +L++R + P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRDRHAVP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D +G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILDL-AGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVSYAVPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D L+MLT GYIK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVPGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S+ GM I + +R L R RG +M L+ GD + SMD++PA L + + ++
Sbjct: 677 IGSRAGMTIHFRLNDNELRPLGRTARGVRSMNLRAGDSLVSMDVLPAELADQIAASADEG 736
Query: 799 HSNVKG------SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAV 851
G + GPW+L S SG GKRVP++ FR +GL KF +A D L +
Sbjct: 737 DEGSDGGESAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTAADELVGL 796
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
V+G + E+++LVS+ G + R I Q+R A GV L RL+ ++ L
Sbjct: 797 RVLG--------AGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVL 848
Query: 912 ISVTEPETD 920
+ E ETD
Sbjct: 849 VP-PEAETD 856
>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
Length = 891
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/850 (48%), Positives = 578/850 (68%), Gaps = 22/850 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQ FS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+AL+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ALI NPE L+ +PGPDFPTGG I+G GI + Y TGRG +T+RG
Sbjct: 198 NLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSGIRETYLTGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII E+PYQTNK+ L+E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+++L+ FLDFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R AP +TA L++ LSE QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSEIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + LI++E+ +L++R+
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRDRYPIE 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D +G LDDID+I N+ ++ ++E GY+KRM + F +RGT G++ + +
Sbjct: 498 RRTEILDL-AGGLDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGRAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E ITS++
Sbjct: 557 EAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREELITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VS F D L+MLT GYIK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSAFNDDTDLLMLTQGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLAVPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-- 796
+ S+ GM I S + +R L R RG +M L++GD + SMD++P L + ++ +
Sbjct: 677 IGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALVSMDVLPVELADRVAQSSDDG 736
Query: 797 -----DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAA 850
D+ S GPW+L S SG GKRVP++ FR +GL KF + D L
Sbjct: 737 GEAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDVLVG 796
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+ V+G + E+V+LVS+ G + R I Q+R A GV L RL+ ++
Sbjct: 797 LRVLG--------AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVV 848
Query: 911 LISVTEPETD 920
L+ PE D
Sbjct: 849 LVP-PAPEED 857
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 39/261 (14%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D LL +++ GY+KR + + F N+++ G I ++G L DA++ + D VL S
Sbjct: 623 DDTDLLMLTQGGYIKRTRLSAFSNIRSNGLI--AIG-LEDGDALTWVRLAVPGDSVLIGS 679
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITS--IIPV---------SEFA 686
G+ R ++ R A G V+ ++L +G+ + S ++PV S+
Sbjct: 680 RAGMTIHFRLSDEELRPLGRTARG---VRSMNLREGDALVSMDVLPVELADRVAQSSDDG 736
Query: 687 GDQ--------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKW 729
G+ ++++ + +G K+V + F + G + AI+ D L
Sbjct: 737 GEAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDVLVG 796
Query: 730 VRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHK 789
+R + V + S+ G+++ +S D I SR G RL GD+++ + ++P A +
Sbjct: 797 LRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLVPPAPEE 856
Query: 790 DLE--RTPEDSHSNVKGSSGP 808
D E D+ + GS P
Sbjct: 857 DEEIAEGSVDAAVDAAGSPDP 877
>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 875
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/826 (49%), Positives = 574/826 (69%), Gaps = 17/826 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 21 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 80
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS++ PLI GHGNFGSID DP AAMRYTE R
Sbjct: 81 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSIDNDPPAAMRYTESR 140
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +L++ LL DI+ +TV+F+ NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 141 LRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 200
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L ALI NP+ QE+++ +PGPDFPTGG I+G GI + Y +GRG +T+RG
Sbjct: 201 NLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSGIRETYLSGRGSVTMRGV 260
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E L+ + R +II ++PYQTNK+ L+E+IA +V +K L+GISDIRDESDR GMR
Sbjct: 261 AEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGISDIRDESDRDGMR 320
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R + P +V+N+L++LT LQS+FS NM+ ++DG+P + L +L FLDFR +
Sbjct: 321 IVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITLSLLRMLNVFLDFRVITI 380
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
E+R ++ L + +ER H++ G+++ LD LD +I ++R A S A L++ L++ QAD
Sbjct: 381 EKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQLQEIHGLTDVQAD 440
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++LS++ + ++I+ E+I +K +F
Sbjct: 441 AILQMQLRRLTALESDKIRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQV 500
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D SG L+DID+I N+ ++ ++E GY+KRM N F +RGT GKS + +
Sbjct: 501 RRTEILDLGSG-LEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGE 559
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+ + FI C HD++L FS RG+ YS AY++P+C+R A GTP+VQ+L + E ITS+I
Sbjct: 560 EEVKLFISCNDHDNLLLFSVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLI 619
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VS F D +L+MLT+ G+IK+ ++ FS IR G+I+I L GD L+WVR ++ D V
Sbjct: 620 SVSSFDDDNYLLMLTIGGFIKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVL 679
Query: 741 MASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ S+ GM I L+ + +R L R RG +M L+DGD + SMD++ L + T +D
Sbjct: 680 IGSKAGMTIHFRLNDNE-LRPLGRTARGVRSMNLRDGDSLVSMDVLSKELADRIASTNDD 738
Query: 798 SHSNVKGS-SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVG 855
N G GPW+L S G GKRVP++ FR + +GL KF ++ D L VG
Sbjct: 739 EAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSDTDEL-----VG 793
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ + G E+V+LVS+ G + R IS Q+R A GV L RL+
Sbjct: 794 LKVLDKG---EEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLD 836
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 31/232 (13%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D LL ++ G++KR + F+ ++ G I + L DA+ + + D VL S
Sbjct: 626 DDNYLLMLTIGGFIKRTPVSAFSKIRANGLISIN---LEDGDALRWVRLASSADSVLIGS 682
Query: 640 DRGIVYSARAY--KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ-------- 689
G+ R ++ R A G V+ ++L DG+ + S+ +S+ D+
Sbjct: 683 KAGMTIHFRLNDNELRPLGRTARG---VRSMNLRDGDSLVSMDVLSKELADRIASTNDDE 739
Query: 690 -----------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKWVRCCTN 735
++++ + +G K+V + F + +G + A++ DEL ++
Sbjct: 740 AINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSDTDELVGLKVLDK 799
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
+ V + S+ G+++ +S D I SR G RL GD ++ + ++P L
Sbjct: 800 GEEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLDSGDHLSEIVLVPPQL 851
>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9515]
Length = 863
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/827 (48%), Positives = 566/827 (68%), Gaps = 18/827 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ++I NP +EL E + GPDFPTGG I+G GI + +++GRG IT+RG
Sbjct: 198 NLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDGIKETFKSGRGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + S ++++ VII E+P+QTNK+ L+E+IA+LV +K L+GISDIRDESDR GMR
Sbjct: 258 ADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++LT LQ++FS N++ +++G+P + L+++L FLDFR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTLSLRKMLDVFLDFRIVTI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR F L + +ER HI++G+++ L+ +D +I ++R A ++A L+ + +LS QAD
Sbjct: 378 KRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTSAREQLQKDHELSVIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I + +L + I ++I +E+ ++ RFS+P
Sbjct: 438 AILQMQLRRLTALEADKIKSEHDELTRKITDYKNILQDKDRINEIILEELSKIDERFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + G LDDID+I N+ ++ ++ GY+KRM + F +RG+ GK+ K + +
Sbjct: 498 RKTEILNL-GGGLDDIDLIANERSVVLLTSAGYLKRMPVSEFESTSRGSRGKAGTKNQED 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D ++ FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITSI+
Sbjct: 557 DEVNLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSIV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F D++L+MLT G+IK+ L+ FS IR+ G+IAI L GD L WVR D V
Sbjct: 617 SVESFDNDRYLLMLTKAGFIKRTPLSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL----ERT 794
+ S GM I D +R L R RG +M LKDGDK+ SMD++ + L L
Sbjct: 677 IGSSKGMTIHFRLDNNELRPLGRTARGVKSMNLKDGDKLVSMDVLTSDLVDQLASLENEN 736
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
ED SN S GPW+L S G GKRVP++ FR +GL KF +D +V
Sbjct: 737 DEDIESN--SSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD----SLV 790
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
G + +G E+++ V++ G + R IS Q+R A GV L RL+
Sbjct: 791 GLKVLGEG---EELIFVTERGVIVRTNADKISQQSRAATGVRLQRLD 834
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
ND LL +++ G++KR + F+ +++ G I + L DA++ + + D VL S
Sbjct: 623 NDRYLLMLTKAGFIKRTPLSAFSKIRSNGLIAIN---LEEGDALTWVRLSKEGDSVLIGS 679
Query: 640 DRGIVYSAR--AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ-------- 689
+G+ R ++ R A G V+ ++L DG+++ S+ ++ DQ
Sbjct: 680 SKGMTIHFRLDNNELRPLGRTARG---VKSMNLKDGDKLVSMDVLTSDLVDQLASLENEN 736
Query: 690 ------------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKWVRCCT 734
++++ + G K+V + F + G + AI+ + D L ++
Sbjct: 737 DEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDSLVGLKVLG 796
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ + ++ G+++ ++ D I SR G RL DGD ++ + ++P
Sbjct: 797 EGEELIFVTERGVIVRTNADKISQQSRAATGVRLQRLDDGDHLSEVVLVP 846
>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. MIT 9211]
Length = 881
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/845 (48%), Positives = 568/845 (67%), Gaps = 24/845 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PL+ GHGNFGSID DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSIDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L+ LL DI+ +TV+F+ NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ALI NPE T EL + + GPDFPTGG I+G GI + Y TGRG +T+RG
Sbjct: 198 NLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNGIQETYLTGRGSVTMRGV 257
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E ++ + R VII ++PYQTNK+ L+E+IA++V +K L+GISDIRDESDR GMR
Sbjct: 258 ADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R + P +V+N+L++LT LQS+FS NM+ ++DG+P + L +LQ FLDFR +
Sbjct: 318 IVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTLSLLRMLQVFLDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR + L + +ER H++ G++V LD LD +I ++R A S A A L++ +L+E QAD
Sbjct: 378 ERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAKAKLQELHRLTEVQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+++I +++L+++ + LI++E+I+LK ++ P
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKEKYEAP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D G +DDID+I N+ ++ ++E GY+KRM N F +RGT GKS + +
Sbjct: 498 RRTEILDLGGG-IDDIDLIANERSVVLLTETGYLKRMPVNQFEATSRGTRGKSGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+ + FI C HD++L FSDRG+ YS AY++P +R+A GTP+VQ+L + E ITS++
Sbjct: 557 EEVKLFISCNDHDNLLLFSDRGVAYSLPAYRVPISSRSAKGTPVVQLLPIPREEAITSLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VS F D L+MLT GYIK+ ++ FS IR G+IAI L GD L WVR + D V
Sbjct: 617 SVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIRANGLIAISLEDGDALTWVRLAASGDSVL 676
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE-- 796
+ S+ GM I D +R L R RG +M L+ GD + MD++P L + T
Sbjct: 677 IGSRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKGDSLVGMDVLPRELADRIAGTNNDD 736
Query: 797 --------DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DR 847
V + GPW+L S SG GKRVP++ FR +GL KF + D
Sbjct: 737 SDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRNDGDS 796
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
L + V+G E+++ V++ G + R IS Q+R A GV L RL+ +
Sbjct: 797 LVGLKVLGHG--------EELLFVTEKGIIVRTSADKISQQSRAATGVRLQRLDSGDHLS 848
Query: 908 SASLI 912
L+
Sbjct: 849 EVVLV 853
>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 867
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/852 (47%), Positives = 576/852 (67%), Gaps = 19/852 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L++L++ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG+SGIAVGMATNIPPH
Sbjct: 138 LQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNGSSGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L A+I NP +EL E + GPDFPTGG I+G GI + +++G+G IT+RG
Sbjct: 198 NLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDGIKETFKSGKGSITMRGV 257
Query: 323 TEVELLDS--KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + S ++++ VII E+P+QTNK+ L+E+IA+LV K LDGISDIRDESDR GMR
Sbjct: 258 ADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRLDGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L+++T LQ++FS N++ +++G+P + L+++L FL+FR +
Sbjct: 318 IVIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTLSLRKMLDVFLEFRIETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR F L + +ER HI++G+++ L+ +D +I ++R A ++A L+++ +LS QAD
Sbjct: 378 KRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNSAREQLQNDHELSVIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L ++I + +L+ ++ I ++I +E+ ++ RFS+P
Sbjct: 438 AILQMQLRRLTALEADKIKSEHDELTKKITDYKNILNDKERINEIILEELSKIDERFSSP 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + G LDDID+I N+ ++ ++ GY+KRM + F +RG+ GK+ K + +
Sbjct: 498 RKTEILNLGGG-LDDIDLIANERSVVLLTTAGYLKRMPVSEFESTSRGSRGKAGTKNQQD 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + FI C HD +L FSDRG+ Y+ AY++P +R A GTP VQ+L + E+ITS++
Sbjct: 557 DEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSLV 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V F + +L+MLT G+IK+ L+ FS +R+ G+IAI L GD L WVR T D V
Sbjct: 617 SVDSFDNECYLLMLTKAGFIKRTPLSAFSKVRSNGLIAINLEEGDALTWVRLSTEGDSVL 676
Query: 741 MASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ S GM I D +R L R RG +M LK+GDK+ SMD++ L L E+
Sbjct: 677 IGSSRGMTIHFRLDTNELRPLGRTARGVKSMNLKEGDKLVSMDVLSCDLVDQLANLEEED 736
Query: 799 HSNV-------KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
N K S+GPW+L S G GKRVP++ FR +GL KF +D
Sbjct: 737 IENENEEDLESKSSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAIKFRIKDD---- 792
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+VG + +G E+++LV++ G + R IS Q+R A GV L RL+ + L
Sbjct: 793 SLVGLKVLGEG---EELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVL 849
Query: 912 ISVTEPETDLFL 923
+ + E D +
Sbjct: 850 VPHEQIEEDQLI 861
>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
Length = 866
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/858 (48%), Positives = 583/858 (67%), Gaps = 21/858 (2%)
Query: 76 VGPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 134
GP S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+
Sbjct: 5 TGPGESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLT 64
Query: 135 SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAA 194
S +P++KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP A
Sbjct: 65 SDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPA 124
Query: 195 AMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVG 254
AMRYTE RL+AL+ LL DI+ +TV+++ NFD SQ+EP+++PAR+P LLLNG+SGIAVG
Sbjct: 125 AMRYTESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVG 184
Query: 255 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314
MATNIPPHNL EL++ L ALI +PE + LL +PGPDFPTGG I+G GI + Y TGR
Sbjct: 185 MATNIPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRETYTTGR 244
Query: 315 GRITVRGKTEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
G +T+RG +E L+ + R VII E+PYQTNK+ L+E+IAE+V +K LDGISDIRD
Sbjct: 245 GSVTMRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGISDIRD 304
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ESDR GMRIVIEL+R A P +V+N+L++LT LQS+FS +M+ +++ +P + L+ +LQ F
Sbjct: 305 ESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLRRMLQVF 364
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L+FR +ERR R+ L + +ER HI+ G+++ LD LD +I ++R A +TA L++
Sbjct: 365 LEFRIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARLQLQERH 424
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LSE Q+DAIL M LRRLT LE K E + L+ +I +++L R+ +L LIE E+I+
Sbjct: 425 GLSEIQSDAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIEAELIQ 484
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
L+ R+ + R + + D + G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK
Sbjct: 485 LRERYPSERRTEILDLEGG-LEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGK 543
Query: 613 SVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSD 672
+ + + +A+ FI C HD +L FSDRG+VY+ AY++P +R A GTP+VQ+L +
Sbjct: 544 AGTRSQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYRVPVGSRGAKGTPVVQLLPIPR 603
Query: 673 GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRC 732
E+ITS++ VS F D L+MLT GYIK+ L+ F++IR+ G+IAI L GD L+W R
Sbjct: 604 EEQITSLVAVSAFDDDVQLLMLTSGGYIKRTRLSAFANIRSNGLIAISLEDGDALRWARL 663
Query: 733 CTNDDLVAMASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHK 789
D V + S GM I L+ + +R L R RG AM L+ GD++ SMD++PA L
Sbjct: 664 ALPGDSVLIGSLKGMTIHFRLTDGE-LRPLGRTARGVRAMALRPGDELVSMDVLPAELAD 722
Query: 790 DL------ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843
+ E ED+ + S GPW+L S SG GKRVP++ FR +GL KF
Sbjct: 723 QVASSSASENEEEDAPEAGESSDGPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKF- 781
Query: 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
R +VG ++ G E+++LVS+ G + R++ I Q+R A GV L +L+
Sbjct: 782 ---RRDGDVLVGLTVMGPG---EELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSG 835
Query: 904 GKIQSASLISVTEPETDL 921
++ L+ E DL
Sbjct: 836 DRLSEVVLVPPAPDEEDL 853
>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
Length = 882
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/865 (48%), Positives = 588/865 (67%), Gaps = 26/865 (3%)
Query: 73 VATVGPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHEL 131
V + GP S RI+ +L +EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+EL
Sbjct: 2 VDSTGPGESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 61
Query: 132 GLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDAD 191
GLSS +P++KCARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D+D
Sbjct: 62 GLSSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSD 121
Query: 192 PAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGI 251
P AAMRYTE RL+ L+ LL DI+ +TV+F+ NFD SQ+EP+++PAR+P LLLNG+SGI
Sbjct: 122 PPAAMRYTESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGI 181
Query: 252 AVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYR 311
AVGMATNIPPHNLGEL+D L A+I +PE + L+ + GPDFPTGG I+G GI +AY
Sbjct: 182 AVGMATNIPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIREAYT 241
Query: 312 TGRGRITVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
TGRG +T+RG +E ++ + + R VII E+PYQTNK+ L+E+IAELV +K LDGISD
Sbjct: 242 TGRGSVTMRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISD 301
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
IRDESDR GMRIV EL+R A P +V+N+L++LT LQS+FS +++ ++ G+P + L+++L
Sbjct: 302 IRDESDRDGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLRQML 361
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
FLDFR +ERR R+ L + +ER H + G+++ LD LD +I ++R A +TA L+
Sbjct: 362 HVFLDFRIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARYQLQ 421
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
LSE QADAIL M LRRLT LE K E + L++++ ++L+ R +L+LI++E
Sbjct: 422 YFHGLSEIQADAILQMQLRRLTALEADKIRFEHEDLVQKVNNYRDILAHRDRVLELIKEE 481
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
+ L NR+++PR + + D + G L+DID+I N+ ++ ++E GY+KRM + F NRGT
Sbjct: 482 LKLLHNRYNSPRRTKILDLE-GSLEDIDLIANERSVVLLTENGYLKRMPVSEFEATNRGT 540
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK+ K + ++ + FI C HD +L FSDRGI Y+ AY++P +R+A GTP+VQIL
Sbjct: 541 RGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQILP 600
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
+ E ITS++ VS F + L+MLT +G+IK+ L+ FS+IR+ G+IAI L GD L+W
Sbjct: 601 IPREEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAFSNIRSNGLIAINLELGDALRW 660
Query: 730 VRCCTNDDLVAMASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
VR D V + S GM I + +R L RN RG AM L+D D + SMD++PA L
Sbjct: 661 VRLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARGVRAMNLRDNDSLVSMDVLPAEL 720
Query: 788 HKDLERTPE---DSHSNVKG-------SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
+ + + + + G ++GPW+L S SG GKRVP++ FR +GL
Sbjct: 721 ADQVANSVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRAGMGL 780
Query: 838 IGYKFSAE-DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
+F + D L + V+G S E+++LVS+ G + R++ I Q+R A GV
Sbjct: 781 RAMRFRRKGDVLVGLKVLG--------SREELLLVSEKGVIVRMQADLIPQQSRAATGVR 832
Query: 897 LMRLELSGKIQSASLI-SVTEPETD 920
L +L+ + LI V E E D
Sbjct: 833 LQKLDDGDHLAEIVLIPHVLEEEDD 857
>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
Length = 878
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/827 (49%), Positives = 571/827 (69%), Gaps = 17/827 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S +P++KC
Sbjct: 18 RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+ PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 78 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ LL DI+ +TV+F NFD SQ+EP++LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 138 LRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL++ L ALI NPE +ELL +PGPDFPTGG I+G GI + Y TGRG +T+RG
Sbjct: 198 NLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAGIRETYLTGRGSVTMRGV 257
Query: 323 TEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E +++ + R VII E+PYQTNK+ L+E+IAE+V +K L+GISDIRDESDR GMR
Sbjct: 258 AAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMR 317
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R A P +V+N+L++LT LQS+FS +M+ +++G+P + L+ +LQ F+DFR +
Sbjct: 318 IVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRRMLQVFIDFRVETI 377
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
ERR R+ L + +ER HI+ G+++ LD LD +I ++R A +TA L++ L++ QAD
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHGLTDIQAD 437
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E + L+ +I +++L R+ + +I++E+ +L++R+
Sbjct: 438 AILQMQLRRLTALEADKIRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRDRYPIE 497
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + +G L+DID+I N+ ++ ++E GY+KRM + F +RGT GK+ + +
Sbjct: 498 RRTEILNIAAG-LEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGE 556
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
+A+ FI C HD +L FSDRG+ Y+ AY++P+C+R A GTP+VQ+L + E IT+++
Sbjct: 557 EAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITTLL 616
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF+ D L+MLT G+IK+ L+ FS+IR+ G+IAI L GD L WVR D V
Sbjct: 617 AVSEFSDDSDLLMLTSGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRQAVPGDSVL 676
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL---ERTP 795
+ ++ GM I S + +R L R RG +M L+DGD + SMD++P L +
Sbjct: 677 IGTRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADKVAQSSDDA 736
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVV 854
D S GPW+L S SG GKRVP++ FR +GL G KF + D L A+ V+
Sbjct: 737 ADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVL 796
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
G + E+++LVS+ G + R I Q+R A GV L +L+
Sbjct: 797 G--------AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLD 835
>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
str. NATL1A]
Length = 872
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/846 (47%), Positives = 582/846 (68%), Gaps = 18/846 (2%)
Query: 75 TVGPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 133
+ GP S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL
Sbjct: 9 STGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGL 68
Query: 134 SSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA 193
+S +P++KCARVVGEVLGKFHPHGD AVYD+LVRMAQDFS++ PLI GHGNFGS+D DP
Sbjct: 69 TSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPP 128
Query: 194 AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAV 253
AAMRYTE RL++L+ LL DI+ +TV+F NFD S +EP++LPAR+P LLLNG+SGIAV
Sbjct: 129 AAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAV 188
Query: 254 GMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
GMATNIPPHNL EL+D L ALI NPE +L+ + GPDFPTGG I+G GI + Y +G
Sbjct: 189 GMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSG 248
Query: 314 RGRITVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
+G IT+RG E+E +++ + R VII E+PYQTNK+ L+E+IA++V +K L+GI+DIR
Sbjct: 249 KGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIR 308
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
DESDR GMRIV+EL+R + P +V+N+L++LT LQ++FS NM+ +++G+P + L+++LQ
Sbjct: 309 DESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQV 368
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
FLDFR +E+R ++ L + + R HI+ G+++ LD LD +I ++R A ++TA L++
Sbjct: 369 FLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQEL 428
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
L++ Q+DAIL M LRRLT LE K E + L+++I+ L+++L+ ++ + ++ + E+
Sbjct: 429 HGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKIIDLKDILNKKERVFEITKIELN 488
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
E+K +++T R + + D G L+DID+I N+ ++ ++E GY+KRM N F +RGT G
Sbjct: 489 EIKEKYNTQRRTEILDLGGG-LEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRGTRG 547
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
K+ + + + + FI C HD +L FSDRGI Y+ AY++P+C+R A GTP+VQ+L +
Sbjct: 548 KAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAKGTPIVQLLPIP 607
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E ITS++ VS F + +L+MLT GYIK+ L+ FS IR G+IAI L GD L WVR
Sbjct: 608 REEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVR 667
Query: 732 CCTNDDLVAMASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ D V + S+NGM I L+ + +R L R+ RG +M LK GD + SMD++ L
Sbjct: 668 LAESGDSVLIGSKNGMTIHFRLNDSE-LRPLGRSARGVKSMNLKSGDSLVSMDVLSTELA 726
Query: 789 KDLER-TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
+++ ++ S S GPW+L S SG GKRVP++ FR +GL KF + D
Sbjct: 727 DHVDKSEEDELQSESSESEGPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD 786
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
L + V+G E+++LVS+ G + R IS Q+R A GV + +L+ K+
Sbjct: 787 ELVGLRVLG--------KGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKL 838
Query: 907 QSASLI 912
L+
Sbjct: 839 SEVVLV 844
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 31/229 (13%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
++ LL ++ GY+KR + F+ ++ G I ++G L DA++ + + D VL S
Sbjct: 623 DENYLLMLTRGGYIKRTPLSAFSKIRANGLI--AIG-LEDGDALTWVRLAESGDSVLIGS 679
Query: 640 DRGIVYSARA--YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ-------- 689
G+ R ++ R+A G V+ ++L G+ + S+ +S D
Sbjct: 680 KNGMTIHFRLNDSELRPLGRSARG---VKSMNLKSGDSLVSMDVLSTELADHVDKSEEDE 736
Query: 690 -----------FLVMLTMNGYIKKVSLNLFSSIRTTG--IIAIQL-VPGDELKWVRCCTN 735
++++ + +G K+V + F + G + AI+ GDEL +R
Sbjct: 737 LQSESSESEGPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGK 796
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
+ + + S+ G+++ +S D I SR G +L +GDK++ + ++P
Sbjct: 797 GEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVP 845
>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
Length = 872
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/846 (47%), Positives = 582/846 (68%), Gaps = 18/846 (2%)
Query: 75 TVGPNVSP-RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 133
+ GP S RI+ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL
Sbjct: 9 STGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGL 68
Query: 134 SSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA 193
+S +P++KCARVVGEVLGKFHPHGD AVYD+LVRMAQDFS++ PLI GHGNFGS+D DP
Sbjct: 69 TSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPP 128
Query: 194 AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAV 253
AAMRYTE RL++L+ LL DI+ +TV+F NFD S +EP++LPAR+P LLLNG+SGIAV
Sbjct: 129 AAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAV 188
Query: 254 GMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
GMATNIPPHNL EL+D L ALI NPE +L+ + GPDFPTGG I+G GI + Y +G
Sbjct: 189 GMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSG 248
Query: 314 RGRITVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
RG IT+RG E+E +++ + R VII E+PYQTNK+ L+E+IA++V +K L+GI+DIR
Sbjct: 249 RGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIR 308
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQA 431
DESDR GMRIV+EL+R + P +V+N+L++LT LQ++FS NM+ +++G+P + L+++LQ
Sbjct: 309 DESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQV 368
Query: 432 FLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE 491
FLDFR +E+R ++ L + + R HI+ G+++ LD LD +I ++R A ++TA L++
Sbjct: 369 FLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQEL 428
Query: 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
L++ Q+DAIL M LRRLT LE K E + L+++I L+++L+ ++ + ++ + E+
Sbjct: 429 HGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKITDLKDILNKKERVFEITKIELN 488
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
E+K +++T R + + D G L+DID+I N+ ++ ++E GY+KRM N F +RGT G
Sbjct: 489 EIKEKYNTQRRTEILDLGGG-LEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRGTRG 547
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
K+ + + + + FI C HD +L FSDRGI Y+ AY++P+C+R A GTP+VQ+L +
Sbjct: 548 KAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAKGTPIVQLLPIP 607
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E ITS++ VS F + +L+MLT GYIK+ L+ FS IR G+IAI L GD L WVR
Sbjct: 608 REEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVR 667
Query: 732 CCTNDDLVAMASQNGMVI---LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ D V + S+NGM I L+ + +R L R+ RG +M LK GD + SMD++ L
Sbjct: 668 LAESGDSVLIGSKNGMTIHFRLNDSE-LRPLGRSARGVKSMNLKSGDSLVSMDVLSTELA 726
Query: 789 KDLER-TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-D 846
+++ ++ HS S GPW+L S SG GKRVP++ FR +GL KF + D
Sbjct: 727 DHVDKSEEDELHSESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD 786
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
L + V+G E+++LVS+ G + R IS Q+R A GV + +L+ K+
Sbjct: 787 ELVGLRVLG--------KGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKL 838
Query: 907 QSASLI 912
L+
Sbjct: 839 SEVVLV 844
>gi|384247120|gb|EIE20608.1| DNA gyrase, A subunit [Coccomyxa subellipsoidea C-169]
Length = 857
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/859 (47%), Positives = 568/859 (66%), Gaps = 38/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ VEL +E SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAMH+LGL KP++KC
Sbjct: 2 KIIDVELQKEAEQSYLAYAMSVIVGRALPDVRDGLKPVHRRILFAMHDLGLLPTKPYRKC 61
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD+AVY++LVRMAQ FS+R PL+ GHGNFGS+D DP AAMRYTECR
Sbjct: 62 ARVVGEVLGKYHPHGDSAVYEALVRMAQGFSMRAPLVAGHGNFGSLDNDPPAAMRYTECR 121
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+A+S A++LAD+ DTV+F PNFD SQ+EP +LPAR+P LL+NG+SGIAV +AT IPPH
Sbjct: 122 LQAVSSAVMLADLAYDTVDFAPNFDNSQEEPRVLPARVPNLLVNGSSGIAVSIATKIPPH 181
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG------LIMGNLGILDAYRTGRGR 316
NL E+V L ALI NP+ T+ EL++++P PDFPTG I+ + GI DAY G+G
Sbjct: 182 NLREVVAGLHALIDNPDITVAELMQHIPAPDFPTGAHWTPFTQILASGGIRDAYEHGKGS 241
Query: 317 ITVRGKTEVELLDSKSK----RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
ITVRG+ +E D+ ++ + +I+ E+PYQTNK+ V K+A LVE + L GISD+RD
Sbjct: 242 ITVRGRAFIEGNDAGAREKVLKPSIIVTELPYQTNKADFVAKVAALVEEQKLTGISDVRD 301
Query: 373 ESDRSGMRIVIEL-KRGADPS------IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGL 425
ESDR GMR+V+EL RG D S +V+N+LY+ T LQS+FS N V +++G P+ + L
Sbjct: 302 ESDRDGMRVVVELSSRGGDLSGNTCAQVVLNNLYKQTTLQSNFSVNSVALVNGTPQTLNL 361
Query: 426 KEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS 485
KE L FLDFRC +++RRARF L + + R+HIV+G+++ L +LD+V+ VR A + AS
Sbjct: 362 KEFLTNFLDFRCQIIKRRARFDLRKAQTRQHIVKGLLLALADLDKVVVTVRAAKDGAAAS 421
Query: 486 AALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQL 545
L+ EF LS +QADA+L M LRRLT LE K +E TL + + +L+ LL S++ +L
Sbjct: 422 KDLQQEFGLSPEQADAVLSMALRRLTSLEAGKLREEEATLAQTLAQLQSLLGSQQLVLDT 481
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
I++E E+ ++F R + + +SGQL D+IPN LL S +GY+KRM + F++Q
Sbjct: 482 IKRESQEIADKFGDSRRTAVRMDESGQLSVEDVIPNRASLLVFSRRGYIKRMPTDLFSVQ 541
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
RG G S ++R +D + + HD VL+FS GI + +AY+IP+ +R AAGTPL
Sbjct: 542 GRGGRGVSGARMREDDTVEEVAHVMDHDTVLFFSPDGICRALKAYQIPQSSRTAAGTPLT 601
Query: 666 QILSLSD---GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
Q L+D G R+ SI+ + EF+ D FLVMLT NG IK+ + LF+++R + + AI+L
Sbjct: 602 QARPLTDLGKGARVASIMSLGEFSDDDFLVMLTKNGLIKRTPMKLFANVRGS-LTAIKLR 660
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
PGDEL WV C DD V +AS +G VI + SR +G +M L DG ++ M +
Sbjct: 661 PGDELMWVERCVADDSVLLASSDGTVIRFPTSQLTPQSRVAQGLKSMVLADGARLVGMSV 720
Query: 783 IPAALH------KDLERTP---EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLN 833
+PA L + + P +D + S P LL V+E+G GKRVPL FR
Sbjct: 721 LPAGLTAPEASGSETDEEPLDDDDQPEELADSPVPSLLLVTENGLGKRVPLDMFRSQRRG 780
Query: 834 RVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893
G G K + D L+AV E S+E+++L + G +NR V I +R AR
Sbjct: 781 GKGRRGIKLNDGDSLSAV--------EVHASNEEMLLTTAGGMMNRTAVSTIRRSSRMAR 832
Query: 894 GVILMRLELSGKIQSASLI 912
GV + L+ +Q+ +++
Sbjct: 833 GVNVANLQEGDSVQAITIL 851
>gi|406983087|gb|EKE04336.1| hypothetical protein ACD_20C00086G0026 [uncultured bacterium]
Length = 851
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/853 (46%), Positives = 551/853 (64%), Gaps = 46/853 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+ + EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAM+ELG++ KP+KKC
Sbjct: 11 KIIPINIREEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRILFAMNELGMTPDKPYKKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD AVYD+LVRMAQ FS RY I GHGNFGS+D D AAAMRYTE R
Sbjct: 71 ARIVGEVLGKYHPHGDTAVYDALVRMAQSFSTRYRTIDGHGNFGSVDGDSAAAMRYTEAR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++S + +LADID +TV+F PNFD S EP +LP RLP LLLNG+SGIAVGMATNIPPH
Sbjct: 131 MTSISTS-ILADIDSETVDFAPNFDGSLDEPVVLPVRLPMLLLNGSSGIAVGMATNIPPH 189
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N E++D ALI NPE T+ EL++Y+ GPDFPT IMG GI AY TGRG + +R
Sbjct: 190 NATEIIDGTIALIDNPEITIPELMQYVKGPDFPTAATIMGTNGIKSAYETGRGSVVMRAV 249
Query: 323 TEVELLDS---KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
E +D+ + R +I+ E+PYQ NK+ L+EKIAELV K L+GISD+RDESDR GM
Sbjct: 250 CAFEEVDAGPGRHDRTAIIVTELPYQVNKASLIEKIAELVREKRLEGISDLRDESDRDGM 309
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIELKR A P +V N+LY+ T++QS+F NM+ ++ QP+ + L EVL F++ R +
Sbjct: 310 RIVIELKRDAKPEVVKNNLYKYTSMQSTFGVNMLALVGKQPRLLNLYEVLNEFVEHRVEI 369
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR F L + R HI+ G+++ L NLD VI IV+ +PS A +AL +F L Q
Sbjct: 370 ITRRTVFDLKKATARAHILAGLVIALGNLDEVIEIVKTSPSTEAARSALISKFGLDIDQT 429
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
+AIL+M LRRLT LE++K E + L +I +L+ +L+ RK +L +I++E+ E K ++
Sbjct: 430 NAILEMQLRRLTGLEQEKINAEHQQLKIKIAELQTILADRKKVLAIIKKELNEDKEKYGD 489
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R +++ +L D+ PN M + I+ GY+KR+ ++F QNR T GK K R
Sbjct: 490 ERRTVIV-PHQDELSIEDLTPNIHMAIFITRNGYIKRIALDSFERQNRATRGKGGMKTRE 548
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
ND ++ F HD VL+FS++G VYS Y PE R A G P++ +L + E IT++
Sbjct: 549 NDDVAHFFTAMMHDKVLFFSNKGTVYSLNVYDFPEGGRTARGLPILNLLPIEQDESITAV 608
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IPVS+F+ +QFL+MLT G+IKK++L+ FSSIR GIIAI L GD L WV N D +
Sbjct: 609 IPVSDFSENQFLIMLTKKGFIKKITLSSFSSIRKNGIIAIGLNEGDTLGWVNHAENKDEI 668
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ + GM I + +R L R+ RG A++L+ D + DI+P RT +
Sbjct: 669 IIGTALGMAIRFAASDLRPLGRSARGVTAIKLRSDDSIVGCDIVPK------NRTAD--- 719
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAE-DRLAAVFVVGF 856
LL V+ G+GKR +S FR P NR +GLI KF R+ + +V
Sbjct: 720 ----------LLVVTTDGYGKRTSISEFR--PQNRGGIGLIATKFKKHTSRVTTITIV-- 765
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ ++++++V+ +G V R KV IS Q R A GV L +++ S+++V +
Sbjct: 766 ------DENDEIMIVTSNGIVTRQKVSQISKQGRPATGVRTQTL-----VENDSVVAVNK 814
Query: 917 PETDLFLPSTSDK 929
+ LP D+
Sbjct: 815 ----IVLPDEDDE 823
>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
Length = 950
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/925 (44%), Positives = 575/925 (62%), Gaps = 59/925 (6%)
Query: 46 FPPSRPPPSSRTPILASKDE--ERNGNGS--VATV------------GPNVSPRIVPVEL 89
P S P +L ++ + R NGS VAT G RI+ EL
Sbjct: 27 LPSSSSPAGGAARLLPARRQPLRRYSNGSQRVATAASSGTEAATEEGGTGSDSRIIETEL 86
Query: 90 HEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV 149
E SY++Y+MSV++GRALPDVRDGLKPVHRRIL+AMHELGL KPF+KCARVVGEV
Sbjct: 87 RLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFRKCARVVGEV 146
Query: 150 LGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEA 209
LGKFHPHGD AVYD+LVR+AQDFS+R L+ GHGNFGS+D DP AAMRYTECRL+A++ A
Sbjct: 147 LGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTECRLQAVASA 206
Query: 210 MLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVD 269
MLLAD++ DTV+F+PNFD S EPS+LPAR+P LL+NG SGIAVG+AT IPPHN+ E+V+
Sbjct: 207 MLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIPPHNMREVVE 266
Query: 270 VLCALIHNPEATLQELLEYMPGPDFPTGGL-----IMGNLGILDAYRTGRGRITVRGKTE 324
L ALIHNP+ T+++L+ ++P PDFPTG L I+ + AY G+G I +R K
Sbjct: 267 GLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKGGILMRAKIH 326
Query: 325 VELLDSKSKRMG---VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
+E D S G V+I E+PYQTNKS LVE+IA LV+ TL G+SDIRDESDR G+R+
Sbjct: 327 IE--DGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDESDRDGVRV 384
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
V+E+KRG + +V+N L + TA+QS FS NMV ++ P + LK LQ FL FRC VVE
Sbjct: 385 VVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLKNFLQHFLSFRCEVVE 444
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK-DEFKLSEKQAD 500
RRAR L + ++R H+V+G + + +LD V+ +R+A + A L+ F LS +QA+
Sbjct: 445 RRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAALVVLRASPFGLSREQAE 504
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
+L M LRRLT LE K +E L +I L++LL + ILQ++ E EL +F TP
Sbjct: 505 GVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQDRILQVVTSEAEELAAKFGTP 564
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + +L D+IPN L+ S +GY+KR++P+TF Q RG +GK+ +L+ +
Sbjct: 565 RRTHIITDGEVELRHEDVIPNAPSLVVYSRRGYIKRVRPDTFGAQKRGGVGKAGARLKED 624
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D++ + + HDH+L+F+ G YS RAY +PE TR A G+ + Q+L RI +++
Sbjct: 625 DSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMV 684
Query: 681 PVSEF-----AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
PVS F + +Q +VMLT G IK+ +L F+SI +G++A+ + GD L++V C+
Sbjct: 685 PVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVREGDSLQFVGLCSP 744
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL-------- 787
D V +A+ NG + +R + R G+ +M L G + +M I+PA +
Sbjct: 745 TDSVLIAASNGSAQHFAITKLRRMGRAAVGNKSMTLSKGTDIVAMAILPAGIVAEGPNDE 804
Query: 788 -------HKDLE-------RTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLN 833
D++ TP +S SN + S+GP+LL V++ G GKR +S FR
Sbjct: 805 DYLSIEGSHDMDYSEGKAAETPAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRART 864
Query: 834 RVGLIGYKFSAEDRLAAV-----FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ 888
G+ + + DRLAAV S E+ VVL +Q G + R+ V D++I
Sbjct: 865 GSGIQALRLNLGDRLAAVQDESSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIH 924
Query: 889 ARYARGVILMRLELSGKIQSASLIS 913
+R+A+G L+++ ++ +A+++S
Sbjct: 925 SRFAKGHRLVKVRQGDEVVAATVLS 949
>gi|449019444|dbj|BAM82846.1| DNA gyrase subunit A precursor [Cyanidioschyzon merolae strain 10D]
Length = 969
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/881 (44%), Positives = 575/881 (65%), Gaps = 44/881 (4%)
Query: 56 RTPILASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRD 115
R + + EE + GS T+ + I+ E+ + SY+ Y++SV+ RALPD RD
Sbjct: 102 RAQLAPAAGEEPSEAGSAGTLEASPHESIINTEVSSVLARSYLEYALSVIHARALPDARD 161
Query: 116 GLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLR 175
GLKPVHRRIL+AM++L L P++KCARVVGEVLGK+HPHGD+AVYD+LVRMAQ FS+
Sbjct: 162 GLKPVHRRILYAMNQLRLDPDGPYRKCARVVGEVLGKYHPHGDSAVYDALVRMAQPFSML 221
Query: 176 YPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSL 235
PL+ G GN GS+D D AAAMRYTECRL +LS+ +LLADIDQDTV+ VPNFD S +EP +
Sbjct: 222 EPLVDGQGNLGSVDGDKAAAMRYTECRLTSLSKRVLLADIDQDTVDMVPNFDASDQEPVV 281
Query: 236 LPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFP 295
LPARLP LLLNGASGIAVGMATNIPPHNL ELV L ALI NP+ EL +P PDFP
Sbjct: 282 LPARLPQLLLNGASGIAVGMATNIPPHNLRELVSALIALIKNPKLLEAELEALIPAPDFP 341
Query: 296 TGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK--RMGVIIKEIPYQTNKSMLVE 353
TGG+IMG G D +RTG+G I +R +T E + +K++ R +I+ E+PYQ NK+ L+E
Sbjct: 342 TGGIIMGLRGSRDLHRTGQGAIILRARTSFETVRAKNRPVREAIIVHELPYQVNKAQLLE 401
Query: 354 KIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMV 413
++A LV K LDGI+D+RDESDR GMRIVIELKR AD ++V+N L++ TALQ++F+ NM+
Sbjct: 402 RMATLVNEKKLDGIADLRDESDRDGMRIVIELKRDADKNVVLNQLFKKTALQAAFNGNML 461
Query: 414 GILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIR 473
++ +P+++ L+ L+ FL++R V++RR F+L++ ++R HIV+G+ + L ++D VIR
Sbjct: 462 ALVGRRPEKLSLRRALEVFLEYRVQVIQRRCTFELNKARDREHIVQGLRLALRDIDAVIR 521
Query: 474 IVREAPSNSTASAALKD---EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
IVR A S A AL D F LSE+QADAIL M LRRLT LE + E + L+ QI
Sbjct: 522 IVRNARDVSFARRALVDPDGAFGLSERQADAILGMQLRRLTQLEMGRLDQEHQELLAQIA 581
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
+LE L+ R+ ++ +I +E+ E++++F PR S + + +L DID++PN+E ++ ++
Sbjct: 582 ELENTLARRELVMAMITRELQEIQSQFGRPRRSAIS-PEEPELSDIDLVPNEESVIIATK 640
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
+GYVKRM F Q RGT GK+ ++R +D ++ F CR HD +L S RG Y+ RA+
Sbjct: 641 QGYVKRMAMREFEAQRRGTRGKAAARIREDDQVAHFFSCRDHDTILAISQRGTAYAIRAF 700
Query: 651 KIPECTRNAAGTPLVQILSLSDGE------RITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
+IP+ +R A G PL +L + D + +++P+S F D++L++LT G++KK
Sbjct: 701 QIPQASRVARGAPLSALLPVFDASIGNAETSLAALVPISAFTPDRYLLLLTQQGWLKKTP 760
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCD--IIRSLSRN 762
L+ F+++ G+I + + D ++WVR C NDD V ++S G+ + S +RS R
Sbjct: 761 LSAFANMNARGLIVMNVRDTDTVRWVRLCGNDDSVIISSTTGLAVRFSLSEAQLRSTGRR 820
Query: 763 TRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRV 822
T+G +MRL+ D +A MD++ D ++V +S +L+ ++E G+GKR+
Sbjct: 821 TQGVRSMRLRKNDAIADMDVV-------------DGCADVT-TSERYLVAITEQGYGKRL 866
Query: 823 PLSSFRKLPLNRVGLIG-----YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTV 877
+ +FR + R G G +K EDRL + V E D +++L+++ GTV
Sbjct: 867 HVDAFR---IQRRGGGGKRATSFKMDTEDRLLCLRCV--------EPDSEIILITERGTV 915
Query: 878 NRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
R+ I IQ R+A GV + RL+ +I S + +E E
Sbjct: 916 VRVPCDSIPIQGRWATGVYVQRLDTGDRIAQVSFTNGSEAE 956
>gi|169830227|ref|YP_001716209.1| DNA gyrase subunit A [Candidatus Desulforudis audaxviator MP104C]
gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
Length = 812
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/837 (45%), Positives = 557/837 (66%), Gaps = 37/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVP++++EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LGL++ KP +K
Sbjct: 7 KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVGEVL K HPHGD AVYD+LVR+AQDF+ RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 67 AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID++TV+F+PN+D + +EP +LP+R+P LL+NG++GIAVGMATNIPPH
Sbjct: 127 MARITSQML-ADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L L +P+A L++L+ ++PGPDFPTGG IMG GI++AYRTGRG I +RG
Sbjct: 186 NLKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGH 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E E + S+++ ++I E+PYQ NK+ LVEKIA LV K ++GISD+RDESDR GMR+V
Sbjct: 246 AEFERVGSRTR---IVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P I +N LY+ T LQ +F ++ ++DGQP+ + LK++L +L + V+ R
Sbjct: 303 IELRREVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R++LSQ + R HIVEG+ + L +LD VI+ +R + + A L F LSEKQA AI
Sbjct: 363 RCRYELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMAGFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K +E L+ I +LE LL+ + IL ++++E++ ++++F+ PR
Sbjct: 423 LDMRLQRLTALERDKLENEFNDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADPRR 482
Query: 563 SML--EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
+ L EDAD + D+IP ++ ++ ++ GY+KRM P+ + Q RG G + + +V
Sbjct: 483 TELVAEDAD---FNPEDLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVETKVQ 539
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + V + HD++L+F++RG VY + Y+IPE R A GT +V ++ +++GER+T++I
Sbjct: 540 DFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVANGERVTAVI 599
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV+E++GD FL M+T G +KK L F S R G+IA+ L GDEL V+ V
Sbjct: 600 PVTEYSGDAFLFMVTRKGIVKKTVLQEFDSARRDGLIALTLDEGDELVDVKITDGKSEVL 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGMVI +R + R G + L++GD + MDI+ P+D
Sbjct: 660 LGTRNGMVIRFPEGQVRPMGRTAHGVRGISLREGDMVVGMDIV----------DPDDQ-- 707
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
LL VSE G+GK P+ FR GLI + S + +V SL
Sbjct: 708 ---------LLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGP----LVSLSLVG 754
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
G E++++VS+SG + R+K+ +I R A+GV LMRL + + + I +P
Sbjct: 755 RG---EEILIVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWILPEDP 808
>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
Length = 843
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/842 (45%), Positives = 557/842 (66%), Gaps = 31/842 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N I+PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K
Sbjct: 2 NNEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD AVYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ LL DI+++TV+F+PNFD +KEPS+LP+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMTKVT-LELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ + I NP+ ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVV 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E D K K +++ EIPYQ NK+ L+E IA LV++K ++GISD+RDESDR G
Sbjct: 241 IRSKAEIEE-DEKGKSR-IVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQG 298
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+ ++V+N LY+ T +Q SF M+ +++G+P+ + LKEVL+ ++ F+
Sbjct: 299 MRIVIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEE 358
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D VI+++R + + + A L +F LSEKQ
Sbjct: 359 VITRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQ 418
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AILDM L+RLT LER+K +E LME I E+LS++ +L++I+ E+ E+K ++
Sbjct: 419 ANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYG 478
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + D +D D+I ++++ ++ GY+KR+ T++ Q RG G +
Sbjct: 479 DERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGIQAMTTK 538
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD++L+FS+RG VY +AY+IPE R A G L+ +L L E+I +
Sbjct: 539 EDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLINLLPLEKNEKIQN 598
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF D++L+M T NG IKK SL+ +SSIR G+ AI L DEL VR T D
Sbjct: 599 VIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSIRKNGLNAINLRENDELISVRVTTGDCN 658
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ A++NG I + R + RN G A+ L+D D++ SM++ A+ +D
Sbjct: 659 IIYATKNGYAIKFDENDARPMGRNATGVKAITLRDDDEVVSMEV--ASDERD-------- 708
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL VSE+G+GKR P+ + G+I YK S + L ++G
Sbjct: 709 -----------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGL----LIGARS 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
ED +++++L++ SG RI V DIS+ +R A GV LMR K+ + + +++TE E
Sbjct: 754 VED---EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITEEE 810
Query: 919 TD 920
+
Sbjct: 811 ME 812
>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
Length = 836
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/830 (45%), Positives = 540/830 (65%), Gaps = 33/830 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + EEM SY+ Y+MSV++ RALPDVRDGLKPV RRIL+ M+E+GL ++K
Sbjct: 13 RVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNAKYRKS 72
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEVL +HPHGD+AVYD+LVRM Q F++RYPLI G GNFGS+D D AAAMRYTE R
Sbjct: 73 AGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMRYTEAR 132
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E LLADID+ TV+FVPN+D+S +EPS+LPARLP LL+NGASGIAVGMATNIPPH
Sbjct: 133 LAPIAEE-LLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATNIPPH 191
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD L LI NPEAT++EL+E +PGPDFPTGG+I+G GIL AY TGRGRI VR +
Sbjct: 192 NLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIVVRAR 251
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ R +I+ E+PYQ NK+ L+E+IAELV++ L+GI D+RDESDR GMRIV
Sbjct: 252 AHIE--ETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMRIV 309
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ-PKQMGLKEVLQAFLDFRCSVVE 441
IELKR A P V+N+L++ T LQ++F NM+ ++DG P+ + LK +LQ +L+ R V+
Sbjct: 310 IELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQVIR 369
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR F L Q + R H++EG+ + LD+LD VI +R A S A L F L+E QA+A
Sbjct: 370 RRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMARFNLTEIQANA 429
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRL LER+K DE + L+ +I +L LL+ IL ++ +E++ELK R+ PR
Sbjct: 430 ILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRKELLELKERYGDPR 489
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +++A S ++ D D++P ++++ ++ +GYVKR F +Q+RG G + +R D
Sbjct: 490 RTQIQEASS-EISDEDLVPRVDVIVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMAVRDED 548
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
++ ++ HD +L+F++RG V+ Y++P+ RNA G P+V L+L GE +T+++P
Sbjct: 549 SIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLPIVNFLNLQPGEEVTTLLP 608
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F+ FL T G +K+V L FS++R +G+IA+ L GDEL WVR + D V +
Sbjct: 609 VRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSLDAGDELAWVRPTSGSDEVIL 668
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ +G I D +R + R G + +RL +GD + + +++ PE
Sbjct: 669 VTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAAEVV----------RPEGD--- 715
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
LL VS+ G+GKR L FR G+I K + A V
Sbjct: 716 --------LLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAATV------- 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
++ VVLVS+ G + + V I Q R+ +GV +MRL+ ++ S ++
Sbjct: 761 AREEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVAV 810
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 36/240 (15%)
Query: 691 LVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
+V LT GY+K+ + F G+ + + D ++ + + D + + G V
Sbjct: 512 IVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRV 571
Query: 749 ILSSCDIIRSLSRNTRGSVA---MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
+ + RN RG + L+ G+++ ++ +P +D S
Sbjct: 572 FQLPTYELPDVGRNARGLPIVNFLNLQPGEEVTTL--LPV---RDF-------------S 613
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
+ +L F + G KRV L F + + GLI A D LA V S
Sbjct: 614 TATFLFFCTRQGRVKRVRLEEFSNVRAS--GLIAMSLDAGDELAWVRPTSGS-------- 663
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPS 925
++V+LV+ G R D+ R A GVI +RL+ + +A V PE DL L S
Sbjct: 664 DEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAA---EVVRPEGDLLLVS 720
>gi|410582429|ref|ZP_11319535.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
gi|410505249|gb|EKP94758.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
Length = 810
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/831 (44%), Positives = 555/831 (66%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRILFAM E G + KPFKK
Sbjct: 8 KILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDKPFKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR VG+VLGK+HPHGD AVYD+LVRMAQDFS+RYPLI GHGNFGSID DP AAMRYTE R
Sbjct: 68 ARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ L+ D+D+DTV+FVPNFDE+++EP++LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 LSPLA-MELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E +D + LI P+AT ++L++ + GPDFPTGG+I+G GI AY TGRG IT+R
Sbjct: 187 NLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAH 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E S R +++ EIPY+ KS ++EKIAELV+ + ++GI+D+RDE+DRSG+R+V
Sbjct: 247 AQIETAASGKAR--IVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL RGA+P++++N LY+ T +Q S+ + ++DGQP+ + LK++L+ +LD + V+ R
Sbjct: 305 IELARGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVIVR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R L++ + R HI+EG+ + LD++D VI ++R++ + A L + F L+EKQA AI
Sbjct: 365 RTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L+++I L +L+S K +L +I+QE+ E+++RF R
Sbjct: 425 LDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFGDDRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A + + + D+I +++++ ++ +GY+KR+ +T+ Q RG G + + R D
Sbjct: 485 TKIV-AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRGITGIQTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+S + H+++L+F++RG VY R +++PE +R A GT +V ++ + E++T++IPV
Sbjct: 544 VSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQVTAVIPV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F D+ L+M T G +K+ +L F IR G+IA+ L PGDEL V+ V +
Sbjct: 604 RDFGEDRDLLMCTRRGVVKRTALAEFGHIRRGGLIALSLDPGDELVAVQLTDGRGDVLLL 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +R++ R RG + +RL++GD++ M++ H
Sbjct: 664 TRQGQAIRFPVAEVRTMGRTARGVMGIRLEEGDEVVGMEVADDEAH-------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL +++ G+GKR P+ FR G+ +A + A GF + G
Sbjct: 710 -------LLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVA----GFEVVRPG 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E+V+L+SQ G V R+ V +SIQ R A+GV +MRLE ++ + + ++
Sbjct: 759 ---EEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVA 806
>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
Length = 846
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/837 (45%), Positives = 553/837 (66%), Gaps = 31/837 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N I+P ++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K
Sbjct: 2 NNEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD AVYDSLVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ LL DI+++TV+F+PNFD +KEPS+LP+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMTKVT-LELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ + I NP+ ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E D K K +++ EIPYQ NK+ L+E IA LV++K ++GISD+RDESDR G
Sbjct: 241 IRSKAEIEE-DEKGKNR-IVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREG 298
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+ ++V+N LY+ T +Q SF M+ +++G+P+ + LKEVL+ ++ F+
Sbjct: 299 MRIVIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEE 358
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D VI+++R + + + A L +F LSEKQ
Sbjct: 359 VITRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQ 418
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AILDM L+RLT LER+K +E LME I E+LS + +L++I+ E+ E+K ++
Sbjct: 419 ANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYG 478
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + D +D D+I ++++ ++ GY+KR+ T++ Q RG G +
Sbjct: 479 DERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQAMTTK 538
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD++L+FS+RG VY +AY+IPE R A G LV +L L E+I +
Sbjct: 539 EDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKDEKIQN 598
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF D++L+M T NG IKK SL+ +SSIR G+ AI L DEL VR T D
Sbjct: 599 VIYLKEFKPDRYLIMGTKNGLIKKTSLDKYSSIRKNGLNAINLRENDELISVRVTTGDCN 658
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ A++NG I + +R + RN G A+ L+D D++ SM++ A+ +D
Sbjct: 659 IIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVVSMEV--ASDERD-------- 708
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL VSE+G+GKR P+ + G+I YK S + L ++G
Sbjct: 709 -----------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGL----LIGARS 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
ED +++++L++ SG RI V DIS+ +R A GV LMR K+ + + +++T
Sbjct: 754 VED---EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKVNIT 807
>gi|345016458|ref|YP_004818811.1| DNA gyrase subunit A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344031801|gb|AEM77527.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
Length = 807
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/835 (44%), Positives = 557/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 7 KVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV +K ++GISD+RDESDR+GM+IV
Sbjct: 246 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 363 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+K++++TPR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TSIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ ++ GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL V+ + + +
Sbjct: 602 KKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTNGEREIIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++ H N
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV---------------HPN- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E+G GKR L +R G+I + S + +L ++ V
Sbjct: 706 -----SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV DIS R RGV LM+L+ ++ S + I E
Sbjct: 755 --PEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807
>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
Length = 807
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/835 (44%), Positives = 556/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 7 KVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV +K ++GISD+RDESDR+GM+IV
Sbjct: 246 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 363 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+K++++TPR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TSIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ ++ GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL V+ + + +
Sbjct: 602 KKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTNGEREIIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I IR + R +G +A+ L++ D++ MD++ H N
Sbjct: 662 TARGYAIRFDEKDIRPMGRVAKGVIAISLREDDEVVEMDLV---------------HPN- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E+G GKR L +R G+I + S + +L ++ V
Sbjct: 706 -----SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV DIS R RGV LM+L+ ++ S + I E
Sbjct: 755 --PEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807
>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 807
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/830 (43%), Positives = 553/830 (66%), Gaps = 34/830 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VP+++ EEM S++ Y+MSV++ RALPDVRDGLKPVHRRILFAMH+LG++ KP+KK
Sbjct: 8 KVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD A+YD++VRMAQDFS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DID++T+++ NFDE+ +EP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 128 MAKIS-TELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + A+I NPE ++L+ Y+ GPDFPTGG+I+G GI DAY TGRG++ +R K
Sbjct: 187 NLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDAYSTGRGKLKIRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E L R +++ EIPYQ NK+ L+E IA LV K ++GISD+RDESDR G+R+V
Sbjct: 247 TEIENLKGNKHR--ILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P++++N LY+ T L+ SF ++ +++G+PK + L+E+L +L+F+ V+ R
Sbjct: 305 IELKRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVIIR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + + R HI+EG+ + L+NLD VI+++R++ + A L + F LS+KQA AI
Sbjct: 365 RTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L++LT LER K +E L+++I +L + +L +I++E+ E+K ++S R
Sbjct: 425 LDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDSRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ + + +LD+ D+IP++E+++ ++ +GYVKR+ +T+ Q RG G S + +D
Sbjct: 485 TLITNK-TDELDEEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISGMTTKNDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ H+++L+F+++G VY + Y+IPE +R A GT +V +L++ E IT++IP+
Sbjct: 544 VEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDEHITAVIPI 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L +T G KKV L+ + R G+IAI L DEL V + +
Sbjct: 604 QEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTDGKQEIILG 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S + +RS+ RN+RG + LKD D++ MDI E+S
Sbjct: 664 TEQGLAIKFSEEEVRSMGRNSRGVKGISLKDNDRVIGMDI-----------AQENSD--- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
LL VSE+G+GKR P+S +R G+ +K S + LA VV
Sbjct: 710 -------LLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVN------ 756
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
DE+++LV+ G +NR +V IS +R +GV L++L+ ++ S ++
Sbjct: 757 --EDEEIILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVVSLAI 804
>gi|333977512|ref|YP_004515457.1| DNA gyrase subunit A [Desulfotomaculum kuznetsovii DSM 6115]
gi|333820993|gb|AEG13656.1| DNA gyrase, A subunit [Desulfotomaculum kuznetsovii DSM 6115]
Length = 808
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/835 (44%), Positives = 551/835 (65%), Gaps = 34/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P++++EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH+LGL+ +P +K
Sbjct: 7 KVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHQLGLTPDRPHRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEV+ KFHPHGD A+YD+LVRMAQDF+ RYPL+ GHGNFGS+D D AAMRYTE R
Sbjct: 67 AHIVGEVMSKFHPHGDMAIYDALVRMAQDFASRYPLVDGHGNFGSVDGDAPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ AML ADI+++TV+F+PN+D S +EP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MARITMAML-ADIEKNTVDFLPNYDGSNEEPKVLPARIPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI NP+ T+ EL++ + GPDFPTGG IMG GI +AY+TGRG I VR +
Sbjct: 186 NLGEVIDGVIRLIDNPDITIPELMQVIKGPDFPTGGKIMGRQGIREAYQTGRGAIKVRAQ 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
VE + + +I+ EIP+ NK+ L+EKIAELV K +DGI+D+RDESDR GMRIV
Sbjct: 246 ATVEKIGGG--KSAIIVHEIPFMVNKARLIEKIAELVREKKIDGITDLRDESDRRGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R A P +++N LY+ T +Q +F M+ ++DGQP+ + L+++L +L+ + VV R
Sbjct: 304 IELRRDAKPRVILNQLYKHTQMQETFGVIMLALVDGQPQVLNLRQMLGHYLEHQKEVVVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + + R HIVEG+ + LD++D VI +R + + A AL ++F LSEKQA AI
Sbjct: 364 RTRFDLEKAEARAHIVEGLRIALDHIDEVINTIRASRTVEIAKNALMEKFGLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K +E K L+++I L +L+ + +LQ+I E+ E++ +F+ PR
Sbjct: 424 LDMRLQRLTGLERDKLEEEYKELLDRIAYLRGVLADERKVLQIIRDELTEMRQKFADPRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ D D+ L+ D+IP +E+++ I+ +GY+KRM +T+ Q RG G + + D
Sbjct: 484 TVISDEDT-TLEAEDLIPEEEVVITITNQGYIKRMPLDTYRSQKRGGRGITAMGTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H + L+FS+RG VY + ++IPE R A GT LV ++ + ERIT++IPV
Sbjct: 543 VRHLFITSTHHYFLFFSNRGKVYRLKVHEIPEAGRQAKGTALVNLIYIGPQERITAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ +L M T G +KK L F + R GIIAI+L DEL V+ + + + +
Sbjct: 603 REFSNGLYLFMATRFGVVKKTQLEQFDTSRRDGIIAIKLDDQDELVEVKLTSGREEIILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I + + R RG + L+ GD + +MDI+ P+
Sbjct: 663 TRQGLAIRFPEEEVHPYGRTARGVKGITLQPGDTVVAMDIV----------RPDGD---- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAED 861
+L V+ +G+GKR P+S +R G+I + + + + A+ VV
Sbjct: 709 -------VLVVTANGYGKRTPVSDYRLQSRGGKGIISARVTGRNGPVVAMQVV------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ DE+++++S G + R+K DIS R +GV+LMRL K+ +A+L+S E
Sbjct: 755 -KPDEEIMVISAEGIIIRLKASDISTMGRATQGVMLMRLAPGDKLVAAALVSAEE 808
>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
Length = 807
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/835 (44%), Positives = 557/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E+GL+ KP+KK
Sbjct: 7 KVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSRIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + A I NP T+ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV NK ++GI+D+RDESDR+GM+IV
Sbjct: 246 AEIEEHKGKTR---IVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD +D VI I+R + + + A L F LS+KQA AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+KN++++PR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TVIV-AKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ +S GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ ++++M T G IKK S+ F SI+ GIIAI L DEL V+ + V +
Sbjct: 602 KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G VI + +R + R RG +A+ L++ D++ MD++ H D E
Sbjct: 662 TAKGYVIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLV----HPDGE---------- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E G GKR L +R G+I K S + +L ++ V
Sbjct: 708 -------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSIRCV------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ +++ +++S +G + R+KV+DIS R +GV LM+LE ++ S + I E
Sbjct: 754 -QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807
>gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 807
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/835 (44%), Positives = 556/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV + +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 7 KVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGS+D DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV +K ++GISD+RDESDR+GM+IV
Sbjct: 246 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 363 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+K++++TPR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TSIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ ++ GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL V+ + + +
Sbjct: 602 KKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTNGEREIIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++ H N
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV---------------HPN- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E+G GKR L +R G+I + S + +L ++ V
Sbjct: 706 -----SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV DIS R RGV LM+L+ ++ S + I E
Sbjct: 755 --PEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807
>gi|392940032|ref|ZP_10305676.1| DNA gyrase, A subunit [Thermoanaerobacter siderophilus SR4]
gi|392291782|gb|EIW00226.1| DNA gyrase, A subunit [Thermoanaerobacter siderophilus SR4]
Length = 807
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/835 (44%), Positives = 556/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 7 KVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV +K ++GISD+RDESDR+GM+IV
Sbjct: 246 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 363 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+K++++TPR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TSIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ ++ GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK + F SI+ GIIAI L DEL V+ + + +
Sbjct: 602 KKSEDIKYIVMCTKKGIIKKTFIEEFRSIKRNGIIAITLEESDELINVKLTNGEREIIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++ H N
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV---------------HPN- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E+G GKR L +R G+I + S + +L ++ V
Sbjct: 706 -----SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV DIS R RGV LM+L+ ++ S + I E
Sbjct: 755 --PEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807
>gi|302872929|ref|YP_003841562.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
Length = 837
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/861 (43%), Positives = 557/861 (64%), Gaps = 34/861 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + +PV++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M+ELG++ KP
Sbjct: 3 NNEGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KCAR+VG+VLGK+HPHGD++VYD+LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 63 HRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R++ ++ M+ DI+++TV+F+PN+D ++EP+++P+R P LL+NG+SGIAVGMATN
Sbjct: 123 TEARMDKMANEMV-RDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D + LI NPEAT+ +L+ + GPDFPT G+IMG GI +AY TGRG++
Sbjct: 182 IPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVV 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR +E R +I+ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR G
Sbjct: 242 VRANATIE---EDGGRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDG 298
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+P++++N LY+ T LQ SF M+ ++D QPK + LKEVL +L+F+
Sbjct: 299 MRIVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKE 358
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F+L + + R HI+EG+ + LDN+D VI I+R + S + A L++ F LSEKQ
Sbjct: 359 VITRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFALSEKQ 418
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AI++M LR LT LER+K DE LM I KL+E+L++ IL +I E+ E+K RF
Sbjct: 419 STAIVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEIKGRFG 478
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E A ++ D+I ++++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 479 DERRTAIE-ASQNDINIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTK 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + V HDH+L+FS+ G VY+ + Y+IPE R A GT ++ +L L E+I +
Sbjct: 538 EDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEEKIQA 597
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I +SEF Q+LV T G IKK +L FS+IR G+ A+ L DEL VR + +D
Sbjct: 598 VITLSEFEKSQYLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSSGEDQ 657
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M +QNG I + +R + R G + L+D D + SM+I+ ++
Sbjct: 658 IIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDEDNVVSMEIVDESMD---------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L VSE+G+GKR P+ ++ +G+I YK S + VV ++
Sbjct: 708 -----------ILVVSENGYGKRTPIGEYKCQNRGGMGIITYKVSEK----TGKVVAATM 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASLISVTEP 917
D + ++++++ + V RI ++IS R A GV LMR K+ + A +IS E
Sbjct: 753 VND---EHEIMIINSADIVIRINSKEISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEE 809
Query: 918 ETDLFLPSTSDKLATESGVSE 938
DL + L E+ V E
Sbjct: 810 IEDLQEHNEIQSLEQEAEVQE 830
>gi|20806553|ref|NP_621724.1| DNA gyrase subunit A [Thermoanaerobacter tengcongensis MB4]
gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
tengcongensis MB4]
Length = 807
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/835 (44%), Positives = 556/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E+GL+ KP+KK
Sbjct: 7 KVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSRIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + A I NP T+ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV NK ++GI+D+RDESDR+GM+IV
Sbjct: 246 AEIEEHKGKTR---IVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD +D VI I+R + + + A L F LS+KQA AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K L+E+I +L+E+L+ + +L++I++E++E+KN++++PR
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TVIV-AKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ +S GE++T++IP+
Sbjct: 542 VEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ ++++M T G IKK S+ F SI+ GIIAI L DEL V+ + V +
Sbjct: 602 KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + +R + R RG +A+ L++ D++ MD++ H D E
Sbjct: 662 TAKGYAIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLV----HPDGE---------- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L V+E G GKR L +R G+I K S + +L ++ V
Sbjct: 708 -------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSIRCV------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ +++ +++S +G + R+KV+DIS R +GV LM+LE ++ S + I E
Sbjct: 754 -QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807
>gi|357039044|ref|ZP_09100839.1| DNA gyrase, A subunit [Desulfotomaculum gibsoniae DSM 7213]
gi|355358508|gb|EHG06274.1| DNA gyrase, A subunit [Desulfotomaculum gibsoniae DSM 7213]
Length = 808
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/823 (44%), Positives = 549/823 (66%), Gaps = 33/823 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
P ++ +++P++++EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LG++ K
Sbjct: 2 PALTGKVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGVTPDK 61
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +K A +VGEV+ K+HPHGD+A+YD+LVR+AQDF+ RYPL+ GHGNFGS+D D AAMR
Sbjct: 62 PHRKSAYIVGEVMAKYHPHGDSAIYDTLVRLAQDFASRYPLVDGHGNFGSVDGDAPAAMR 121
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ LLADID++TV+F+PN+DES KEP +LP+R P LL+NG++GIAVGMAT
Sbjct: 122 YTEARLSKITTE-LLADIDKETVDFIPNYDESGKEPVILPSRFPNLLVNGSAGIAVGMAT 180
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPHNL E++D LI NP+ + +L++++ GPDFPTG +IMG GI AY+TGRG +
Sbjct: 181 NIPPHNLNEVIDGFVMLIDNPQIDIADLMKHIKGPDFPTGAIIMGRDGIRSAYKTGRGTV 240
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR K E+E K+ +I+ E+PYQ NK+ L+EKIAELV++K +DGISD+RDESDR
Sbjct: 241 KVRAKAEIE---DNGKKTSIIVSELPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRH 297
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIEL+R A+P +++N LY+ T +Q SF M+ +++G+PK + LKEVL +L+ +
Sbjct: 298 GMRIVIELRRDANPKVILNQLYKHTQMQDSFGIIMLALVNGEPKVLNLKEVLHHYLEHQK 357
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
++ RR +++L++ +ER HIVEG+ + L NLD VI+I+R + + TA L + F SEK
Sbjct: 358 DIIVRRTKYELNKAEERAHIVEGLRIALANLDEVIKIIRGSKNTDTAREGLMNRFNFSEK 417
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L RLT LER+K E K L+++I L +L+ + +L ++++E+I +KN+F
Sbjct: 418 QAQAILDMRLHRLTGLEREKLEAEYKELIKKIDYLRSVLADERMVLGIVKEEIIAIKNKF 477
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
R +++ ++S ++D D+I +++++AI+ +GY+KRM +T++ Q RG G + +
Sbjct: 478 GDKRRTIIS-SESIDVEDEDLISEEDVVIAITNQGYIKRMPLDTYHSQRRGGRGINAMGI 536
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+ +D + + H + L+F+++G VY + Y+IPE R A GT +V +L + E IT
Sbjct: 537 KDDDFLRHLFIATTHHYFLFFTNKGKVYRLKGYEIPESGRQARGTAIVNLLYIDKDEYIT 596
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++IP+ EF D +L+M T G IKK LN + + GI A+ L GD L
Sbjct: 597 TVIPIREFDNDYYLLMATRRGIIKKTPLNEYGYTKRDGIKALNLDDGDALVNALLTDGTV 656
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + +QNG+ I S + +RS R TRG + L + D++ SMD+I ED
Sbjct: 657 EIIIGTQNGLAIRFSEEDVRSTGRVTRGVKGITLNEHDEVVSMDLI-----------RED 705
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
S LL V+ G+GKR ++ +R G+I K + + L VV
Sbjct: 706 SE----------LLVVTSKGYGKRTKINEYRTQTRGGKGIINIKCTERNGL----VVSLQ 751
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ + +++V+++S G + RIK D+S+ R +GV+LM+L
Sbjct: 752 VV---KPEDEVLMISADGIMIRIKADDVSLFGRITQGVLLMKL 791
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 25/210 (11%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTI-------GKSVGKLRVNDAMSDFIVCRAHD 633
ND LL + +G +K+ N + R I G ++ + D + I+ +
Sbjct: 606 NDYYLLMATRRGIIKKTPLNEYGYTKRDGIKALNLDDGDALVNALLTDGTVEIIIGTQNG 665
Query: 634 HVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVM 693
+ FS+ + + R TR G ++L++ + + S+ + E D L++
Sbjct: 666 LAIRFSEEDVRSTGR------VTRGVKG------ITLNEHDEVVSMDLIRE---DSELLV 710
Query: 694 LTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKW-VRCCTNDDLVAMASQNGMVIL 750
+T GY K+ +N + + GII I+ + L ++ +D V M S +G++I
Sbjct: 711 VTSKGYGKRTKINEYRTQTRGGKGIINIKCTERNGLVVSLQVVKPEDEVLMISADGIMIR 770
Query: 751 SSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
D + R T+G + M+L +GD + ++
Sbjct: 771 IKADDVSLFGRITQGVLLMKLGEGDHVVAV 800
>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
Length = 828
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/859 (43%), Positives = 563/859 (65%), Gaps = 41/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ ELGL+ K ++KC
Sbjct: 7 KVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE+T+ EL+ + GPDFPTG IMG GI AY TG+G+I VR
Sbjct: 186 NLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKIIVRAN 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ EIPYQ NK+ LVE IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 246 AEIE---EENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+PS+V+N LY+ T LQ +F M+ +++ +PK + LK++L+ +++F+ V+ R
Sbjct: 303 IELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L++ + R HI+EG+ + LDN+D VI I+R + + A L + F+LSEKQ+ AI
Sbjct: 363 RTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+QI L+ +L+S + +L +I++E++E+KNR+S R
Sbjct: 423 LEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYSDERK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S +E ++D D+I +++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 483 SKIEKI-VNEIDIEDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H VL+F+++G VY RAY++ + R A GT L+ ++++ E+I +++ V
Sbjct: 542 VEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIEPDEKIQTVLTV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ + FL M T G +KK L+ F ++R G+IAI L GDEL V+ D + +
Sbjct: 602 TDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANIMVV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +RS+ R G A+ LK+ D MDI
Sbjct: 662 TQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G LL +SE+G+GKR P++ ++ VGLI YK S + +LA +
Sbjct: 702 -AVDGEELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGATIC------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASLISVTEPETD 920
+ D++++L++ SG RI V DIS+ +R A GV LMR K+ + A ++S + ET+
Sbjct: 754 -KVDDELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETE 812
Query: 921 LFLPSTSDKLATESGVSEM 939
+ D+ +ES ++ +
Sbjct: 813 -----SGDEAESESEINNI 826
>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
Length = 812
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/836 (44%), Positives = 543/836 (64%), Gaps = 32/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV+L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LG++ KP +K
Sbjct: 6 KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEVLGKFHPHGD AVYD++VRMAQDFS RYPLI GHGNFGS+D D AAAMRYTE R
Sbjct: 66 AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DID++TV+F+PN+D S KEP +LP+R+P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MAKITVEML-RDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I +PE + EL++ + GPDFPTGG IMG GI AY TGRG I VR
Sbjct: 185 NLREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAV 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T E L + +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR GMRIV
Sbjct: 245 TTFEKL--SGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P +V+N L++ T LQ +F M+ ++D QP+ + LKE+L +L+ + VV R
Sbjct: 303 IELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L++ +ER HI+EG+ + L NLD VI+I+R + TA L F L+EKQA AI
Sbjct: 363 RTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L+++I +L+ + +L +I QE++E+K ++ R
Sbjct: 423 LDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDARR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +S D+ D+I ++M++ I+ +GY+KR+ +T+ Q RG G + + D
Sbjct: 483 TQITNEES-IFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMATKEEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H+++L+F+++G VY + ++IPE R A GTP+V +L + ERIT+IIPV
Sbjct: 542 VRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERITAIIPV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L M+T NG +KK L+ + S R GIIA+ L GD+L V+ T + V +
Sbjct: 602 KEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I S +R + R RG + L GD++ ++++ D +
Sbjct: 662 TKKGMAIRFSETDVRPMGRTARGVKGITLSPGDEVIGLEVV-------------DEQAE- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL V+ G GK+ P S +R G+I K + ++ VVG
Sbjct: 708 -------LLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNG----EVVGIVAV--- 753
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+++V+ +S G + R+K +IS Q R +GV LM+L ++ + + I+ E E
Sbjct: 754 RPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDE 809
>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
Length = 822
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/822 (45%), Positives = 541/822 (65%), Gaps = 35/822 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP+K
Sbjct: 6 QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LL DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATNIP
Sbjct: 126 ARMSKIA-MELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D L AL NPE T+ +L+EY+PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + + +I+ E+PYQ NK+ L+E+IAELV + +DGI+D+RDESDR+GMR
Sbjct: 245 AKAEIE--QHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +V+N+LY+ TALQ+SF NM+ +++G+PK + LKE L+ +L+ + +V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSE+QA
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K E + ++ I +L +L+ + +LQ+I E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + QLDD D+IP++ +++ ++ KGY+KR+ +T+ Q RG G +
Sbjct: 483 RRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSED 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + ++ HD VL+F+++G VY A+ Y+IPE R A G P++ +L L E I ++I
Sbjct: 543 DFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ F +++LV T G K+ SL+ F+ IR G+IAI L GDEL VR +
Sbjct: 603 PIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQKHLI 662
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM+I +R++ R+ G A+ L D D++ SM+I+ ED H
Sbjct: 663 IGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEIL------------EDHHD 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSL 858
+L V++ G GKR P S +R GL + + +A VVG
Sbjct: 711 ---------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVAVTTVVG--- 758
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+E +++++ SG + RI V DIS R A+GV L+RL
Sbjct: 759 ------NEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRL 794
>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
Length = 822
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/822 (45%), Positives = 541/822 (65%), Gaps = 35/822 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP+K
Sbjct: 6 QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LL DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATNIP
Sbjct: 126 ARMSKIA-MELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D L AL NPE T+ +L+EY+PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + + +I+ E+PYQ NK+ L+E+IAELV + +DGI+D+RDESDR+GMR
Sbjct: 245 AKAEIE--QHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +V+N+LY+ TALQ+SF NM+ +++G+PK + LKE L+ +L+ + +V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSE+QA
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K E + ++ I +L +L+ + +LQ+I E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + QLDD D+IP++ +++ ++ KGY+KR+ +T+ Q RG G +
Sbjct: 483 RRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSED 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + ++ HD VL+F+++G VY A+ Y+IPE R A G P++ +L L E I ++I
Sbjct: 543 DFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ F +++LV T G K+ SL+ F+ IR G+IAI L GDEL VR +
Sbjct: 603 PIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQKHLI 662
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM+I +R++ R+ G A+ L D D++ SM+I+ ED H
Sbjct: 663 IGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEIL------------EDHHD 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSL 858
+L V++ G GKR P S +R GL + + +A VVG
Sbjct: 711 ---------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVAVTTVVG--- 758
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+E +++++ SG + RI V DIS R A+GV L+RL
Sbjct: 759 ------NEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRL 794
>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
gi|375006809|ref|YP_004980436.1| DNA gyrase subunit A [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448236316|ref|YP_007400374.1| DNA gyrase subunit alpha [Geobacillus sp. GHH01]
gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
gi|359285652|gb|AEV17336.1| DNA gyrase subunit A [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445205158|gb|AGE20623.1| DNA gyrase subunit alpha [Geobacillus sp. GHH01]
Length = 818
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/844 (45%), Positives = 549/844 (65%), Gaps = 37/844 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP+K
Sbjct: 6 QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LL DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATNIP
Sbjct: 126 ARMSKIA-MELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D L AL NPE T+ +L+EY+PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + + +I+ E+PYQ NK+ L+E+IAELV +K +DGI+D+RDESDRSGMR
Sbjct: 245 AKAEIE--QQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +V+N+LY+ TALQ+SF NM+ +++G+PK + LKE L+ +L+ + +V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L F LSE+QA
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K E + L+ I +L +L+ + +LQ+I E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + Q DD D+IP + +++ ++ KGY+KR+ +T+ Q RG G +
Sbjct: 483 RRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTAED 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + ++ HD VL+F+++G VY A+ Y+IPE R A G P++ +L L E I ++I
Sbjct: 543 DFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMI 602
Query: 681 PV-SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
P+ SEF+ +++LV T G K+ L+ F+ IR G+IAI L GDEL VR +
Sbjct: 603 PIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDGKKHL 662
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NGM+I +R++ R+ G A+ L DGD++ M+I+ ED H
Sbjct: 663 IIGTKNGMLIRFPETDVRAMGRSATGVKAITLDDGDEVVGMEIL------------EDHH 710
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFS 857
+L V++ G GKR P S +R GL + ++ +A VVG
Sbjct: 711 D---------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVAVTTVVG-- 759
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE-LSGKIQSASLISVTE 916
+E V++++ G + RI V DIS R A+GV L+RL G A++ V E
Sbjct: 760 -------NEDVMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKVPE 812
Query: 917 PETD 920
E D
Sbjct: 813 EERD 816
>gi|332980612|ref|YP_004462053.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
gi|332698290|gb|AEE95231.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
Length = 809
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/828 (44%), Positives = 546/828 (65%), Gaps = 36/828 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V L EEM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL KP++K
Sbjct: 8 KVIEVNLEEEMKHSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLMPDKPYRKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHG+ AVYDS+VRMAQDFS+RYPL+ GHGNFGSID DP AAMRYTE R
Sbjct: 68 ARIVGDVLGKYHPHGEAAVYDSMVRMAQDFSMRYPLVDGHGNFGSIDNDPPAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ ML DID++TV+F+PNFDE+ KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 128 LSRLAMEML-TDIDKETVDFIPNFDETLKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E +D +I +P+ ++ EL++ + GPDFPTGG+IMG GI AY TGRGRI VRGK
Sbjct: 187 NLKETIDAAIKVIDDPDISIDELMKTLKGPDFPTGGIIMGRDGIKQAYHTGRGRIKVRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E L R +I+ EIPYQ K+ LV +IA LV++K +DGI+DIRDESD+ GMRI
Sbjct: 247 TSIEPLPGGRSR--IIVTEIPYQVTKADLVVQIANLVKDKKIDGIADIRDESDKEGMRIA 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+LKR +P++V+N LY+ T L+ +F M+ ++D QPK + +K++ ++D + V+ R
Sbjct: 305 IDLKRDVNPNVVLNLLYKHTRLEDTFGIIMLALVDNQPKVLNIKQMFYYYIDHQKDVIVR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R+R+ L + + R HI+EG+ + LD++D ++ ++R + ++ A AL +F LS+KQA AI
Sbjct: 365 RSRYDLEKAEARAHILEGLRIALDHIDAIVALIRSSKTDQIAKEALMSQFNLSDKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER K +E LM I L +LS + ++I+ E+ ++N++ R
Sbjct: 425 LDMRLRRLTGLERDKIEEEYAQLMSTIEYLRRVLSDEGMVYKIIKDELKTIRNKYGDDRR 484
Query: 563 SMLED-ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + AD +++ D+I ++E+ + ++ GY+KR+ +T+ Q RG G + + R D
Sbjct: 485 TQISSKADEMEIE--DLIQDEEVAITLTHFGYIKRLPLDTYKSQRRGGKGITGMQTRDED 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ V H ++L+F+++G VY RAY +PE R A GT ++ +L+LS GE+I+++IP
Sbjct: 543 FVEHIFVTSTHSYMLFFTNKGKVYMMRAYDVPEAGRQAKGTAIINLLNLSGGEKISAVIP 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ +++L+M T GYIKK S+ + +I G++AI L GDEL V ++ V +
Sbjct: 603 IRHIDDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGEGDELIGVELTNGENEVII 662
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+++ GM I D +RS+ R RG A++L GDK+ M+++ +
Sbjct: 663 STKEGMAIRFPEDDVRSMGRTARGVKAIKLNQGDKVIDMELVDESAD------------- 709
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAE 860
LL VSE+G+GKR PL +R G+I K + + LAA+ VV
Sbjct: 710 --------LLMVSENGYGKRTPLKEYRSQSRGGKGIITMKITEKTGPLAAIKVV------ 755
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
D+++++V+ G + R++V+ I +Q R +GV LM++E +I S
Sbjct: 756 --HEDDEIMMVTSDGIIIRLEVKGIPVQGRNTQGVTLMKVENGQRIVS 801
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%)
Query: 579 IPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLY 637
I +++ L+ + +GY+K+ + N+ G + +G+ D + + + V+
Sbjct: 606 IDDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGE---GDELIGVELTNGENEVII 662
Query: 638 FSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMN 697
+ G+ + R A G V+ + L+ G+++ + V E A L+M++ N
Sbjct: 663 STKEGMAIRFPEDDVRSMGRTARG---VKAIKLNQGDKVIDMELVDESAD---LLMVSEN 716
Query: 698 GYIKKVSLNLFSSIRT--TGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMVILSSCD 754
GY K+ L + S GII +++ L ++ DD + M + +G++I
Sbjct: 717 GYGKRTPLKEYRSQSRGGKGIITMKITEKTGPLAAIKVVHEDDEIMMVTSDGIIIRLEVK 776
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASM 780
I RNT+G M++++G ++ S+
Sbjct: 777 GIPVQGRNTQGVTLMKVENGQRIVSL 802
>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
Length = 829
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/839 (44%), Positives = 553/839 (65%), Gaps = 34/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR-LELSGKIQSASLISVTEPETD 920
D++++L++ G RI V DIS+ +R A GV LMR LE + A + T E D
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEED 812
>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
Length = 839
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 546/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K+++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|359409916|ref|ZP_09202381.1| DNA gyrase, A subunit [Clostridium sp. DL-VIII]
gi|357168800|gb|EHI96974.1| DNA gyrase, A subunit [Clostridium sp. DL-VIII]
Length = 827
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/837 (43%), Positives = 552/837 (65%), Gaps = 35/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV+++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ ELGLS K ++KC
Sbjct: 7 KIIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLSPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSTGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L+ NPE+T+ EL+ + GPDFPTG IMG GI AY TG+G++ VR
Sbjct: 186 NLGEIIDGTVMLMDNPESTVLELMSKIQGPDFPTGATIMGKAGIRAAYETGKGKVVVRAN 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ EIPY NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 246 AEIE---EENGRHSIIVTEIPYAVNKAKLIENIADLVKDKKITGISDLRDESDREGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++V+N LY+ T LQ +F M+ +++ +PK + LK++L+ ++DF+ V+ R
Sbjct: 303 IELKRDANPNVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYIDFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+D VI I+R + ++ A L D+F LSEKQ+ AI
Sbjct: 363 RTVFELNKAEARAHILEGLKIALDNIDEVISIIRNSKTSEIAKDTLMDKFNLSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+QI L+ +L++ + +L +I+ E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIEEEYNELMKQIEYLQSILANEEKLLGVIKDELLEIKAKYSDGRR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S +E ++D D+I +E+++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 483 SKIEKI-VNEIDIEDLIQEEEVVITLTHSGYIKRISADTYSAQRRGGKGIQAMSTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H +L+F+++G VY RAY+IP+ R A GT L+ ++S+ E+I +++ V
Sbjct: 542 VEQLMITSTHSDILFFTNKGRVYKLRAYEIPDAGRQAKGTNLINLISIEADEKIQTVLTV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ + FL M T G +KK L+ F ++R G+IAI L GDEL V+ D + +
Sbjct: 602 TDDRKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANIMVV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +RS+ R G A+ LK D MDI
Sbjct: 662 TQNGYAVKFNEKDVRSMGRTASGVRAINLKGDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G LL +SE+G+GKR P+ ++ VGLI YK S + +LA +
Sbjct: 702 -AVDGEELLVISENGYGKRTPIVQYKLQNRGGVGLITYKISEKTGKLAGATIC------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ D++++L++ SG RI V DIS+ +R A GV LMR K+ + + I+ ++ +
Sbjct: 754 -KVDDELMLINSSGVAIRINVSDISVTSRSAMGVTLMRTNDDEKVVAIAKIASSDDD 809
>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
Length = 839
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 545/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|422872597|ref|ZP_16919082.1| DNA gyrase subunit A [Clostridium perfringens F262]
gi|380306483|gb|EIA18747.1| DNA gyrase subunit A [Clostridium perfringens F262]
Length = 839
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 545/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
Length = 839
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 545/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K+++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
Length = 805
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/835 (44%), Positives = 552/835 (66%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 5 KVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 64
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 65 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 124
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 125 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 183
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 184 NLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRAK 243
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV K ++GISD+RDESDR+GM++V
Sbjct: 244 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQAI 420
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K LME+I +L+ +L+ + +L++I++E++E+K++++TPR
Sbjct: 421 VDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRK 480
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 481 TNIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 539
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ ++ GE++T++IP+
Sbjct: 540 VRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPL 599
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL + + + +
Sbjct: 600 KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREIIIG 659
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV------------------- 700
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G +L V+E G GKR L +R G+I + S + +L ++ V
Sbjct: 701 --HPGSEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 752
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV +IS R RGV LM+L+ ++ S + I E
Sbjct: 753 --PEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805
>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
gi|422347734|ref|ZP_16428645.1| DNA gyrase subunit A [Clostridium perfringens WAL-14572]
gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
gi|373223712|gb|EHP46059.1| DNA gyrase subunit A [Clostridium perfringens WAL-14572]
Length = 839
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 545/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
Length = 810
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/831 (44%), Positives = 551/831 (66%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G + KPFKK
Sbjct: 8 KILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDKPFKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR VG+VLGK+HPHGD AVYD+LVRMAQDFS+RYPLI GHGNFGSID DP AAMRYTE R
Sbjct: 68 ARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ L+ D+D+DTV+FVPNFDE+++EP++LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 LSPLA-MELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E +D + LI +P+A ++L++ + GPDFPTGG+I+G GI AY TGRG IT+R
Sbjct: 187 NLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAH 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E S S + +++ EIPY+ KS ++EKIAELV+ + ++GI+D+RDE+DRSG+R+V
Sbjct: 247 AQIET--SASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL RGA+P++++N LY+ T +Q S+ ++ ++DGQP+ + LK++L+ +LD + V+ R
Sbjct: 305 IELARGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVILR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R L + + R HI+EG+ + LD++D VI ++R++ + A L + F L+EKQA AI
Sbjct: 365 RTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L+++I L +L+S K +L +I+QE+ E+++RF R
Sbjct: 425 LDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFGDDRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + + D+I +++++ ++ +GY+KRM NT+ Q RG G + + R D
Sbjct: 485 TKIVSG-AADFEVEDLIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRGVTGIQTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
++ + H+++L+F++RG VY R ++IPE R A GT +V ++ + E++T++IPV
Sbjct: 544 VAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIERDEQVTAVIPV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F D+ L+M T G +K+ +L FS IR G+IA+ L PGDEL V V +
Sbjct: 604 RDFGEDRDLLMCTRRGVVKRTALAEFSHIRRGGLIALALDPGDELVAVELTDGRGDVLVV 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +R++ R RG + +RL +GD++ M++ H
Sbjct: 664 TRLGQAIRFPVAEVRTMGRAARGVMGIRLDEGDEVVGMEVADDEAH-------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL +++ G GKR P+ FR G+ +A + A GF + G
Sbjct: 710 -------LLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVA----GFEVVRPG 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E+V+L+SQ G V R+ V +S+Q R A+GV +MRLE ++ + + ++
Sbjct: 759 ---EEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVA 806
>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
Length = 839
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/817 (45%), Positives = 545/817 (66%), Gaps = 33/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL VSE+G+GKR L ++ +GLI YK S D+ VVG ++ ++
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGK--VVGATVCKE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D++++L++ G RI V DIS+ +R A GV LMR
Sbjct: 756 --DDELMLINNQGVAIRINVSDISVTSRSAMGVKLMR 790
>gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 805
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/835 (44%), Positives = 551/835 (65%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 5 KVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 64
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 65 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 124
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 125 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 183
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 184 NLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRAK 243
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV K ++GISD+RDESDR+GM++V
Sbjct: 244 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQAI 420
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE K LME+I +L+ +L+ + +L++I++E++E+K++++TPR
Sbjct: 421 VDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRK 480
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 481 TNIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 539
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ + GE++T++IP+
Sbjct: 540 VRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPL 599
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL + + + +
Sbjct: 600 KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREIIIG 659
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV------------------- 700
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G +L V+E G GKR L +R G+I + S + +L ++ V
Sbjct: 701 --HPGSEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 752
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV +IS R RGV LM+L+ ++ S + I E
Sbjct: 753 --PEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805
>gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514]
gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
Length = 807
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/835 (44%), Positives = 551/835 (65%), Gaps = 35/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV + +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+ELGL+ KP+KK
Sbjct: 7 KVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VVGEVLGK+HPHGD AVYD+LVR+AQDFS+R LI GHGNFGSID DP AAMRYTE R
Sbjct: 67 VAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 LSKIALEML-TDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + A I NP ++ EL++Y+ GPDFPTGG+I+G GI + Y TGRG+I VR K
Sbjct: 186 NLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ ++I EIPY K+ L+EKIAELV K ++GISD+RDESDR+GM++V
Sbjct: 246 AEIEEHHGKTR---IVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ +P +++N LY T +Q +F M+ ++DG+PK + LK++++ ++D + VV R
Sbjct: 303 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI I+R + + + A L D+F LSEKQA AI
Sbjct: 363 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L RLT LER+K DE + LME+I +L+ +L+ + +L++I++E++E+K++++TPR
Sbjct: 423 VDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A +LD D++ +++++ ++ GY+KRM +T+ Q RG G R +D
Sbjct: 483 TNIV-AKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F+++G VYS R IPE R A GT +V ++ + GE++T++IP+
Sbjct: 542 VRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPL 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ +++VM T G IKK S+ F SI+ GIIAI L DEL V+ + + +
Sbjct: 602 KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTNGEREIIIG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + IR + R +G +A+ L++ D++ MD++
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLV------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G +L V+E G GKR L +R G+I + S + +L ++ V
Sbjct: 703 --HPGSEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVN------ 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +++S +G + R+KV DIS R RGV LM+L+ ++ S + I E
Sbjct: 755 --PEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807
>gi|410723310|ref|ZP_11362554.1| DNA gyrase, A subunit [Clostridium sp. Maddingley MBC34-26]
gi|410603356|gb|EKQ57791.1| DNA gyrase, A subunit [Clostridium sp. Maddingley MBC34-26]
Length = 826
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/818 (44%), Positives = 542/818 (66%), Gaps = 35/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ ELGL+ K ++KC
Sbjct: 7 KVIPVDIKHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD +VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI +PE T+ +L+ + GPDFPTG IMG GI AY TG+G+I VR K
Sbjct: 186 NLGEIIDGTVMLIDDPEVTVLDLMTKIKGPDFPTGATIMGKSGIRAAYETGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 246 AEIE---EENGRHTIIVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++V+N LY+ T LQ +F M+ +++ +P + LK++L+ +++F+ V+ R
Sbjct: 303 IELKRDANPNVVLNLLYKHTKLQDTFGIIMLALVNNEPIVLNLKQILEHYIEFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L++ + R HI+EG+ + LDN+D VI I+R + ++ A L + F LSEKQ+ AI
Sbjct: 363 RTVFDLNKAEARAHILEGLKIALDNIDEVISIIRNSSTSEIAKNTLMERFNLSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+QI L+ +L+S + +L +I+ E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIEEEYNELMKQIEYLKSILASEEKLLGVIKSELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S +E ++D D+I +++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 483 SYIEKI-VNEIDIEDLIQEEDVVITLTHSGYIKRISADTYSAQRRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H VL+F+++G VY RAY+IP+ R A GT L+ ++++ E+I +++ V
Sbjct: 542 VEHLMITSTHSDVLFFTNKGRVYKLRAYEIPDAGRQAKGTNLINLIAIESDEKIQTVLTV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ + FL M T G +KK L+ F ++R G+IAI L GDEL V+ D + +
Sbjct: 602 TDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANIMVV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +RS+ R G A+ LK+ D MDI
Sbjct: 662 TQNGYAVKFNEKDVRSMGRTASGVKAINLKEDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G LL +SE+G+GKR P++ ++ VGLI YK S + +LA +
Sbjct: 702 -AVDGEELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGATIC------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ D++++L++ SG V RI V DIS+ +R A GV LMR
Sbjct: 754 -KVDDELMLINSSGVVIRINVSDISVTSRSAMGVTLMR 790
>gi|260891936|ref|YP_003238033.1| DNA gyrase subunit A [Ammonifex degensii KC4]
gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
Length = 802
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/819 (44%), Positives = 550/819 (67%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+E+ EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LG++ +P +K
Sbjct: 3 KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEVL ++HPHGD VYD+LVR+AQDF+ RYPL+ GHGNFGSID D AAMRYTE R
Sbjct: 63 AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L + ML DI++DTV+FVPN+D + +EP++LP+RLP LL+NG++GIAVGMATNIPPH
Sbjct: 123 LSRYALEML-RDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPH 181
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L ALI NP+ +L+EL+ Y+PGPDFPTGG+I+G GI AY TGRG I VRGK
Sbjct: 182 NLGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGK 241
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E K R ++I EIPYQ NK+ L+E+IAELV+ K L+G++D+RDESDRSG+R+V
Sbjct: 242 ATIE---RKGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVV 298
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR ADP +++N LY+ T L+ +F M+ +++GQP+ + LKE+++ +L+ + VV R
Sbjct: 299 VELKRDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVR 358
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L + + R +VEG++V +DN+D V+++++ AP TA L F L+EKQA AI
Sbjct: 359 RCQYELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLISTFGLTEKQAQAI 418
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K V E K L E+I LE +L+ + ++++E+ LK RF+ PR
Sbjct: 419 LDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADPRR 478
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ D + + D+IP +++++ +S +GY+KR + + Q+RG G + KL+ D
Sbjct: 479 TLIVDEEVTYRPE-DLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTGLKLKDGDF 537
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + HD++L+F+ G V+ + Y+IPE R GT L +L LS E++T+IIPV
Sbjct: 538 VRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQVTAIIPV 597
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++F+ D++++++T G +KK+ L ++IR G+ AI L PGDEL ++ V +
Sbjct: 598 ADFSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAALPGPEEEVLLV 657
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +R + R RG M+L+ GD++A + ++ A
Sbjct: 658 TEGGKAIRFRAAEVRPMGRAARGVRGMKLRPGDRVAGLAVLDGAGE-------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G+GKRV + F PL G +G A + + VVG + D
Sbjct: 704 -------VLLVTAGGYGKRVKTADF---PLQGRGGMGVTALAVSKTSGP-VVGVEVVRD- 751
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+E+++L S +G + R+KV+++ + R ARGV+LMRL+
Sbjct: 752 --EEEILLASAAGWLTRLKVKEVPVMGRQARGVVLMRLQ 788
>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cytotoxicus NVH 391-98]
gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
Length = 821
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/824 (44%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE +
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAAMRYTEAK 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DI ++T+++ N+D S++EP +LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NPE T+ EL+EY+PGPDFPT GLI+G GI AY TGRG IT+R K
Sbjct: 188 QLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGSITLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + R +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR G+RIV
Sbjct: 248 VEIE--EKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRGLRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ ++DG+PK + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFALSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + L++ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEVKERFNDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+LYF+++G VY + Y+IPE +R A G P++ +L + E + +
Sbjct: 543 -DDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLEVDKDEWVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ FS+IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D + M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLDEDDHVVGMEIVEENMN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLE 796
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 20/213 (9%)
Query: 578 IIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
IIP +D+ L +++G KR ++F N++ G I S LR D + +
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAIS---LREEDEVISVRLTSG 658
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
++ + G++ + RNAAG V+ ++L + + + + V E + +
Sbjct: 659 DKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLDEDDHVVGMEIVEE---NMNV 712
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV----PGDELKWVRCCTNDDLVAMASQNGM 747
+++T NGY K+ + + I++ G ++ +L V+ T ++ + + + G+
Sbjct: 713 LIVTKNGYGKRTPIEEYR-IQSRGGKGLKTCNITEKNGKLVAVKSVTGEEDIMLITAAGV 771
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
+I + I + RNT+G +RL+D ++A++
Sbjct: 772 IIRMPVEQISQMGRNTQGVRLIRLEDDQEVATV 804
>gi|399889394|ref|ZP_10775271.1| DNA gyrase subunit A [Clostridium arbusti SL206]
Length = 828
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/834 (44%), Positives = 556/834 (66%), Gaps = 33/834 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N +++ V++ +EM YI+Y+MSV++ RALPDVRDGLKPVHRRI+++MHELGL+ K
Sbjct: 2 NNEGKVLQVDISDEMKKCYISYAMSVIIDRALPDVRDGLKPVHRRIIYSMHELGLTPDKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++KCAR+VG+VLGK+HPHGD++VYD+LVRMAQDF+LRYPL+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFNLRYPLVNGHGNFGSVDGDSAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ +S M+ DI ++TV+F+PNFD ++EPS++P+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMSKISMEMI-RDIGKNTVDFIPNFDGEEEEPSVIPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D + LI N E T+ EL+ + GPDFPT G+IMG GI A+ TGRG++
Sbjct: 181 IPPHNLNEVIDGIFMLIENSETTILELMTKIKGPDFPTSGMIMGKSGIRSAFETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E ++ K K +I+ E+PYQ NK+ L+E +AELV++K L GISD+RDESDR G
Sbjct: 241 VRSKCEIEEVNGKHK---IIVTELPYQVNKAKLIENMAELVKDKRLTGISDLRDESDREG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+P +++N LY+ T LQ SF M+ ++DG+P+ + LK++LQ ++ F+
Sbjct: 298 MRIVIELKRDANPQVLLNQLYKHTKLQDSFGIIMLALVDGKPQYLNLKQILQHYIVFQEE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F+L + + R HI+EG+ + LD++D VI I+R + + A L + F LSEKQ
Sbjct: 358 VIRRRTQFELDKARARAHILEGLKIALDHIDEVISIIRSSKTVREAEGRLMERFALSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
++AI++M LRRLT LER K +E LM+ I LE +L+ + +L +I+ E+ E+K ++
Sbjct: 418 SEAIVEMKLRRLTGLERDKIEEELAELMKTIEYLESVLADKDMVLNIIKDELTEIKAKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R +++E ++ ++D D+I +++++ ++ GY+KRM +T+ Q RG G +
Sbjct: 478 DERKTVIESVEN-EIDIEDLIEEEDVVITLTHAGYIKRMPEDTYTAQRRGGRGIQAMSTK 536
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + H+++L+FS++G VY +AY+I E R A GT L+ +L L+ GE+I +
Sbjct: 537 EDDFVEHIFITSTHNNILFFSNQGKVYKLKAYEIHEAGRTAKGTNLINLLQLNQGEKIQA 596
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
II + EF D +L+M T NG IKK SL+ +++IR +G+ AI L GDEL VR +
Sbjct: 597 IITLKEFKEDSYLMMGTKNGMIKKTSLDQYAAIRKSGLNAINLRDGDELISVRLTDGNSE 656
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M ++NG I + R L RNT G + L++ D + +M+++ D+E++
Sbjct: 657 ILMVTKNGYAIRFNEKDARPLGRNTSGVRGINLREDDIVVTMEVV------DIEQS---- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L VS +G GK+ +S + G+I YK + + +VG +
Sbjct: 707 -----------VLVVSSNGFGKKTLISEYSLQKRGGKGVITYKVTEK----TGELVGARM 751
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+D +DE +++ S V RI V DIS +R A GV LMR +GK+ + + I
Sbjct: 752 VKD--TDEMMIINSDD-IVIRINVSDISTTSRNAMGVTLMRTNDNGKVMAIAKI 802
>gi|336233552|ref|YP_004586168.1| DNA gyrase subunit A [Geobacillus thermoglucosidasius C56-YS93]
gi|423718278|ref|ZP_17692460.1| DNA gyrase, A subunit [Geobacillus thermoglucosidans TNO-09.020]
gi|335360407|gb|AEH46087.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
gi|383367208|gb|EID44491.1| DNA gyrase, A subunit [Geobacillus thermoglucosidans TNO-09.020]
Length = 824
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/826 (45%), Positives = 547/826 (66%), Gaps = 38/826 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP
Sbjct: 4 NQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATN
Sbjct: 124 TEARMSKIAMEML-RDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH LGE++D + AL NP+ T+ +L+E++PGPDFPT G I+G GI AY TGRG IT
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K M +I++E+PYQ NK+ L+E+IAELV K +DGI+D+RDESDRSG
Sbjct: 243 LRAKAEIEQ-QPNGKEM-IIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+++ A+ +++N+LY+ TA+Q+SF NM+ ++DGQPK + LKE LQ +LD + +
Sbjct: 301 MRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKT 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L +F LSE+Q
Sbjct: 361 VIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFSLSERQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K E + L+ I +L+ +L+ + +LQ+I E+ E+K RF+
Sbjct: 421 AQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFN 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + + + +D D+IP + +++ ++ KGY+KR+ +T+ Q RG G+ V +
Sbjct: 481 DERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRG--GRGVQGMH 538
Query: 619 VN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
N D + ++ HD VL+F+++G VY A+ Y+IPE R A G PL+ +L L E I
Sbjct: 539 TNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLINLLELDKDEWI 598
Query: 677 TSIIPV-SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+IIP+ +EF + +L T G K+ L+ F+ IR G+IAI L GDEL +
Sbjct: 599 NTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISAKLTDG 658
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++NGM+I +R++ R+ G A+ L+DGD++ M+I+
Sbjct: 659 SKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEIL------------ 706
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVV 854
ED G +L V+++G+GKR P S +R G+ + ++ + AV V
Sbjct: 707 ED---------GCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVAVKTV 757
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ SG + RI V DIS R +GV L+RL
Sbjct: 758 ------TGEED--LMLITASGILIRIAVSDISRMGRNTQGVKLIRL 795
>gi|416348351|ref|ZP_11680303.1| DNA gyrase subunit A [Clostridium botulinum C str. Stockholm]
gi|338196917|gb|EGO89094.1| DNA gyrase subunit A [Clostridium botulinum C str. Stockholm]
Length = 842
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/860 (43%), Positives = 558/860 (64%), Gaps = 32/860 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N IVP+++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K
Sbjct: 2 NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD AVYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ LL DI+++TV+F+PNFD +KEPS+LP+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMTKVT-LELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ + I NPE ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E KS+ +++ EIPYQ NK+ L+E IA LV++K ++GISD+RDESDR G
Sbjct: 241 LRSRAEIEEDKGKSR---IVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+ ++V+N LY+ T +Q SF M+ +++G+PK + LKEVL+ ++ F+
Sbjct: 298 MRIVIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D VIR++R + + A L ++F LSEKQ
Sbjct: 358 VITRRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMNKFGLSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K +E LME + ++LS + +L++I+ E+ E+K ++
Sbjct: 418 ATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R S + + +D D+I ++++ ++ GY+KR+ T++ Q RG G +
Sbjct: 478 DERKSEIIQDEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAMTTK 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD++L+F++ G VY +AY+IPE R A G L+ ++ L E+I +
Sbjct: 538 EDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEEKIQN 597
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF D FL+M T G IKK SL+ ++SIR G+ AI L DEL VR T D
Sbjct: 598 VIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELISVRVTTGDCN 657
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V A++NG I + +R + R G A+ L++ D++ SM++ A+ ++D
Sbjct: 658 VIYATKNGYAIRFDENDVRPMGRTATGVKAITLREDDEVVSMEV--ASENRD-------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL VSE+G+GKR + + G+I YK S + L ++G
Sbjct: 708 -----------LLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGL----LIGARF 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
ED ++++L++ SG RI V DIS +R A GV LMR + K+ + + ++++E E
Sbjct: 753 VED---KDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEIE 809
Query: 919 TDLFLPSTSDKLATESGVSE 938
D TS+ + +SE
Sbjct: 810 DDCNNICTSEDEEGNNDLSE 829
>gi|404369617|ref|ZP_10974951.1| DNA gyrase subunit A [Clostridium sp. 7_2_43FAA]
gi|226914439|gb|EEH99640.1| DNA gyrase subunit A [Clostridium sp. 7_2_43FAA]
Length = 848
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/861 (43%), Positives = 558/861 (64%), Gaps = 43/861 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ +++++EM YI Y+MSV++GRALPDVRDGLKPVHRRILF+M ELGL+ K ++KC
Sbjct: 7 KVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ A +L DI ++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIA-AEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE T+ EL+ + GPDFPTG IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 246 AEIE---EENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A+P++++N LY+ T +Q +F M+ +++ +P+ + LK+VL +++F+ VV R
Sbjct: 303 IELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+D VI I+R + + A L + F+LSEKQA AI
Sbjct: 363 RTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L +I+ E+IE+KNR++ R
Sbjct: 423 LEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRYNDERR 482
Query: 563 SMLEDADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+ +E ++DIDI I +E+++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 483 TSIEKV----VNDIDIEDLIQEEEVVITLTHSGYIKRISADTYSSQRRGGRGIQAMSTKE 538
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + V H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I ++
Sbjct: 539 DDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAIEQDEKIETV 598
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ V + + FL M T G +KK L+ F ++R G+IAI L GDEL V+ D +
Sbjct: 599 LSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKVKITRGDADI 658
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ +Q+G I + +R + R G ++ L+ D MDI
Sbjct: 659 VIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIAVCMDI----------------- 701
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
G LL +SE+G GKR P++ +++ GLI YK S + V+G ++
Sbjct: 702 ----AVEGEDLLVISENGFGKRTPITEYKRQKRGGTGLITYKLSEK----TGKVIGATIC 753
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI--SVTEP 917
+ D++++L++ SG RI V DIS+ +R GV LMR KI + + I S+ +
Sbjct: 754 ---KIDDELMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDK 810
Query: 918 ETDLFLPS--TSDKLATESGV 936
E L L S +D++ +E V
Sbjct: 811 EEQLTLDSEDINDEVKSEIAV 831
>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
Length = 849
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/836 (44%), Positives = 545/836 (65%), Gaps = 33/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ V++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M LGLS K ++KC
Sbjct: 7 KIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD +VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE+++ EL+ + GPDFPTG IMG+ GI AY TGRG+I VR K
Sbjct: 186 NLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E ++ R +I EIPYQ NK+ L+E IAELV++K + GISD+RDESDR GMRIV
Sbjct: 246 SEIE---EENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+I++N LY+ T LQ SF M+ +++ + K + LKEVL ++DF+ V+ R
Sbjct: 303 IELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+DRVI I+R + ++ A L DEF LSEKQ+ AI
Sbjct: 363 RTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K DE L++Q+ L +L+S + +L +I+ E++E+K ++ R
Sbjct: 423 LEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E D +++ D+I +++++ +++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TDIE-QDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQAMSTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I +++ V
Sbjct: 542 VDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEADEKIQTVLTV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ D +L M T G +KK LN F ++R G+IAI L DEL V+ D V
Sbjct: 602 TDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +R + R G A+ LKD D MDI
Sbjct: 662 TQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL +SE+G GKR P+S ++ VGLI YK S + +VG ++
Sbjct: 702 -AVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISEK----TGKLVGATVC--- 753
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ D++++L++ +G RI V DIS +R A GV LMR KI + + I ++ E
Sbjct: 754 KVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDE 809
>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
Length = 842
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/860 (43%), Positives = 557/860 (64%), Gaps = 32/860 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N IVP+++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K
Sbjct: 2 NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD AVYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ LL DI+++TV+F+PNFD +KEPS+LP+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMTKVT-LELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ + I NPE ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E KS+ +++ EIPYQ NK+ L+E IA LV++K ++GISD+RDESDR G
Sbjct: 241 LRSRAEIEEDKGKSR---IVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+ ++V+N LY+ T +Q SF M+ +++G+PK + LKEVL+ ++ F+
Sbjct: 298 MRIVIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D VIR++R + + A L +F LSEKQ
Sbjct: 358 VITRRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K +E LME + ++LS + +L++I+ E+ E+K ++
Sbjct: 418 ATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R S + + +D D+I ++++ ++ GY+KR+ T++ Q RG G +
Sbjct: 478 DERKSEIIQDEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAMTTK 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD++L+F++ G VY +AY+IPE R A G L+ ++ L E+I +
Sbjct: 538 EDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEEKIQN 597
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF D FL+M T G IKK SL+ ++SIR G+ AI L DEL VR T D
Sbjct: 598 VIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELISVRVTTGDCN 657
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V A++NG I + +R + R G A+ L++ D++ SM++ A+ ++D
Sbjct: 658 VIYATKNGYAIRFDENDVRPMGRTATGVKAITLREDDEVVSMEV--ASENRD-------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL VSE+G+GKR + + G+I YK S + L ++G
Sbjct: 708 -----------LLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGL----LIGARF 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
ED ++++L++ SG RI V DIS +R A GV LMR + K+ + + ++++E E
Sbjct: 753 VED---KDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEIE 809
Query: 919 TDLFLPSTSDKLATESGVSE 938
D TS+ + +SE
Sbjct: 810 DDCNNICTSEDEEGNNDLSE 829
>gi|440782433|ref|ZP_20960450.1| DNA gyrase subunit A [Clostridium pasteurianum DSM 525]
gi|440219957|gb|ELP59166.1| DNA gyrase subunit A [Clostridium pasteurianum DSM 525]
Length = 821
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/840 (43%), Positives = 558/840 (66%), Gaps = 33/840 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N +++ V + EEM YI+Y+MSV++ RALPDVRDGLKPVHRRI+++MHELGL+ K
Sbjct: 2 NNEGKVLQVNISEEMKKCYISYAMSVIIDRALPDVRDGLKPVHRRIIYSMHELGLTPDKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++KCAR+VG+VLGK+HPHGD +VYD+LVRMAQDF+LRYPL+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKCARIVGDVLGKYHPHGDASVYDALVRMAQDFNLRYPLVNGHGNFGSVDGDSAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ M+ DI ++TV+F PNFD ++EPS++P+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMSKMAMEMV-RDISKNTVDFGPNFDGEEEEPSVIPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D + LI N E T+ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLNEVIDGIFMLIDNSETTILELMTKIKGPDFPTSGMIIGKSGIRSAYETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E +++K + +I+ E+PYQ NK+ L+E +AELV++K L GISD+RDESDR G
Sbjct: 241 VRSKCEIEEVNNKHR---IIVTELPYQVNKAKLIENMAELVKDKRLVGISDLRDESDREG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+P +++N LY+ T LQ SF ++ ++DG+P+ + LK+VLQ ++DF+
Sbjct: 298 MRIVIELKRDANPQVLLNQLYKHTKLQDSFGIIILALVDGKPQYLNLKQVLQYYIDFQEE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V++RR +F+L + + R HI+EG+ + LD++D VI I+R + + A L F LSEKQ
Sbjct: 358 VIKRRTQFELDKARARAHILEGLKIALDHIDEVISIIRSSKTVREAEERLMKAFSLSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
++AI++M LRRLT LER K +E L++ I LE++L++R IL +I+ E+ E+K+++
Sbjct: 418 SEAIVEMKLRRLTGLERDKIEEELAELVKNIEYLEKVLANRYMILNIIKDELTEIKSKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R +++E+A++ ++D D+I +++++ ++ GY+KR+ +T+ Q RG G +
Sbjct: 478 DERKTVIENAEN-EIDIEDLIEEEDVVITLTHAGYIKRLPADTYTAQRRGGRGIQAMATK 536
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + H+++L+FS+RG VY +AY+I E R A GT L+ +L L+ E+I +
Sbjct: 537 EDDFVEHIFITSTHNNILFFSNRGRVYKLKAYEIHEAGRTAKGTNLINLLQLNQDEKIQA 596
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF + +L+M T NG +KK SL+ +S+IR +G+ AI L DEL VR D+
Sbjct: 597 VITLKEFKEEDYLIMATKNGVVKKTSLDQYSTIRKSGLNAINLREDDELIGVRLTNGDND 656
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M ++NG I + R L RN G + L+ D + M+++ D+E+
Sbjct: 657 ILMTTKNGYAIRFNEKDARPLGRNASGVRGITLRGDDIVVGMEVV------DVEKD---- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L VS +G GKR P+S + G+I YK + D+ +VG +
Sbjct: 707 -----------VLVVSSNGFGKRTPVSEYSVQKRGGKGVITYKVN--DKTGE--LVGARM 751
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+D ++V++++ + V RI V DIS +R A GV LMR K+ + + I E +
Sbjct: 752 VKDT---DEVMIINSNDIVIRINVSDISTTSRNAMGVTLMRTTDEEKVMAIAKIDTDESD 808
>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
Length = 824
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/826 (45%), Positives = 546/826 (66%), Gaps = 38/826 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP
Sbjct: 4 NQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATN
Sbjct: 124 TEARMSKIAMEML-RDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH LGE++D + AL NP+ T+ +L+E++PGPDFPT G I+G GI AY TGRG IT
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K M +I++E+PYQ NK+ L+E+IAELV K +DGI+D+RDESDRSG
Sbjct: 243 LRAKAEIEQ-QPNGKEM-IIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+++ A+ +++N+LY+ TA+Q+SF NM+ ++DGQPK + LKE LQ +LD + +
Sbjct: 301 MRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKT 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR ++L + + R HI+EG+ + LD LD VI ++R + + A L +F LSE+Q
Sbjct: 361 VIRRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFSLSERQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K E + L+ I +L+ +L+ + +LQ+I E+ E+K RF+
Sbjct: 421 AQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFN 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + + + +D D+IP + +++ ++ KGY+KR+ +T+ Q RG G+ V +
Sbjct: 481 DERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRG--GRGVQGMH 538
Query: 619 VN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
N D + ++ HD VL+F+++G VY A+ Y+IPE R A G PL+ +L L E I
Sbjct: 539 TNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLINLLELDKDEWI 598
Query: 677 TSIIPV-SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+IIP+ +EF + +L T G K+ L+ F+ IR G+IAI L GDEL +
Sbjct: 599 NTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISAKLTDG 658
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++NGM+I +R++ R+ G A+ L+DGD++ M+I+
Sbjct: 659 SKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEIL------------ 706
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVV 854
ED G +L V+++G+GKR P S +R G+ + ++ + AV V
Sbjct: 707 ED---------GCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVAVKTV 757
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ SG + RI V DIS R +GV L+RL
Sbjct: 758 ------TGEED--LMLITASGILIRIAVSDISRMGRNTQGVKLIRL 795
>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
Length = 825
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/823 (45%), Positives = 541/823 (65%), Gaps = 32/823 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N +PRI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP
Sbjct: 4 NQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK A +VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 64 YKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATN
Sbjct: 124 TEARMSKIAMEML-RDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH LGE+VD + AL NP+ T+ +L+EY+PGPDFPT G I+G GI AY TGRG IT
Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E S K M +I++E+PYQ NK+ L+E+IAELV K +DGI+D+RDESDRSG
Sbjct: 243 LRAKVEIEQ-QSNGKEM-IIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE++R A+ +++N+LY+ TALQ++F NM+ ++DGQPK + LKE LQ +LD + +
Sbjct: 301 MRIVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKT 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L +F LSE+Q
Sbjct: 361 VIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFSLSERQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K E + L+ I +L+ +L+ + +LQ+I E+ E+K RF+
Sbjct: 421 AQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEIKERFN 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + + DD D+IP + +++ ++ KGY+KR+ +T+ Q RG G
Sbjct: 481 DERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHTS 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + ++ HD VL+F+++G VY A+ Y+IPE R A G P++ +L L E I +
Sbjct: 541 EDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIINLLELDKDEWINT 600
Query: 679 IIPV-SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
IIP+ +EF + +L T G K+ L+ F+ IR G+IAI L GDEL V+
Sbjct: 601 IIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISVKLTDGSK 660
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + ++NGM+I +R++ R+ G A+ L+DGD++ M+I L D +
Sbjct: 661 HIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDGDEVVGMEI----LEDDCD----- 711
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+++G+GKR P S +R GL + ++ +V V
Sbjct: 712 ------------VLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKN--GSVVAVKTV 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E ++L++ G + RI V DIS R +GV L+RL
Sbjct: 758 TGE-----EDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRL 795
>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 849
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/836 (44%), Positives = 545/836 (65%), Gaps = 33/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ V++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M LGLS K ++KC
Sbjct: 7 KIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD +VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE+++ EL+ + GPDFPTG IMG+ GI AY TGRG+I VR K
Sbjct: 186 NLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E ++ R +I EIPYQ NK+ L+E IAELV++K + GISD+RDESDR GMRIV
Sbjct: 246 SEIE---EENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+I++N LY+ T LQ SF M+ +++ + K + LKEVL ++DF+ V+ R
Sbjct: 303 IELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+DRVI I+R + ++ A L DEF LSEKQ+ AI
Sbjct: 363 RTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K DE L++Q+ L +L+S + +L +I+ E++E+K ++ R
Sbjct: 423 LEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E D +++ D+I +++++ +++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TDIE-QDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQAMSTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I +++ +
Sbjct: 542 VDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEADEKIQTVLTI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ D +L M T G +KK LN F ++R G+IAI L DEL V+ D V
Sbjct: 602 TDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +R + R G A+ LKD D MDI
Sbjct: 662 TQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL +SE+G GKR P+S ++ VGLI YK S + +VG ++
Sbjct: 702 -AVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISEK----TGKLVGATVC--- 753
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ D++++L++ +G RI V DIS +R A GV LMR KI + + I ++ E
Sbjct: 754 KVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDE 809
>gi|296131559|ref|YP_003638806.1| DNA gyrase subunit A [Thermincola potens JR]
gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
Length = 814
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/819 (44%), Positives = 545/819 (66%), Gaps = 32/819 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+ +++EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AM ELG++ KP KK
Sbjct: 11 KILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDKPHKKS 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD AVYD++VRMAQDF+ RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 71 ARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMRYTEAR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++ ML ADID+DTV+FVPNFD++ KEP +LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 131 MAKITQEML-ADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATNIPPH 189
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI NP+AT QEL+ + GPDFPTGG+IMG GI AY+TGRG I +R K
Sbjct: 190 NLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIRIRAK 249
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + + R +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR GM+IV
Sbjct: 250 TTIETMSNGKSR--ILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQIV 307
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL++ A+P +V+N L++ T LQ +F M+ ++DGQPK + L++ L +L+ + V+ R
Sbjct: 308 IELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVITR 367
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L + + R HI+EG+ + LD+LD VI+ +RE+ + A AL D+F LSEKQA AI
Sbjct: 368 RTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFGLSEKQAQAI 427
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L++LT LER+K +E K L+E+I L+ +L++ +L +I++E++ +K +++ PR
Sbjct: 428 LDMRLQKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVIKEKYNDPRR 487
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D +D D+I ++M++ I+ GY+KR+ +T+ Q RG G + + D
Sbjct: 488 TEISINDV-NIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTAMGTKEEDF 546
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H ++L+F+++G VY + + IPE R A GT +V +L +S E+IT++IPV
Sbjct: 547 VEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDEKITAVIPV 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F +++L+ +T G IKK L + S R GIIA+ L DEL V+ + V +
Sbjct: 607 RSFDTEEYLLTITRKGVIKKTPLVEYGSTRKDGIIALSLDENDELIDVKLTNGKNEVIIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I + + +RS+ R RG + L + D++ +D I
Sbjct: 667 TKEGKAIRFAEEEVRSMGRAARGVRGISLSEKDEVIGIDTI------------------- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+E G GKR + +R+ G++ + + + +VG + + G
Sbjct: 708 --EQGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNG----HLVGIKVVKPG 761
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++++L++ G + R+ V IS R +GV LMRL+
Sbjct: 762 ---DELMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLD 797
>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
Length = 849
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/842 (44%), Positives = 549/842 (65%), Gaps = 32/842 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N IVP+++ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K
Sbjct: 2 NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD AVYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ LL DI+++TV+FVPNFD +KEPS+LP+R P LL+NG+SGIAVGMATN
Sbjct: 122 TEAKMTKVT-LELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ + I NP+ ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVI 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E +S+ +++ EIPYQ NK+ L+E IA LV++K ++GISD+RDESDR G
Sbjct: 241 LRSKAEIEEEKGRSR---IVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+ ++V+N LY+ T +Q SF M+ +++G+PK + LKEVL+ ++ F+
Sbjct: 298 MRIVIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D VI+++R + + A L F LSEKQ
Sbjct: 358 VITRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K +E LME I ++LS + +L++I+ E+ E+K ++
Sbjct: 418 ATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R S + + +D D+I ++++ ++ GY+KR+ T++ Q RG G +
Sbjct: 478 DERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAMTTK 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD++L+F++ G VY +AY+IPE R A G L+ ++ L E+I +
Sbjct: 538 EDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEEKIQN 597
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + EF D+FL+M T G IKK SL+ ++SIR G+ AI L DEL R T D
Sbjct: 598 VIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELVSARVTTGDCN 657
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ A++NG I + +R + R G A+ L++ D++ SM++ A+ ++D
Sbjct: 658 IIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVVSMEV--ASENRD-------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
L VSE+G+GKR P+ + G+I YK S + L ++G
Sbjct: 708 -----------FLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGL----LIGARS 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
ED ++++L++ SG RI V DIS +R A GV LMR + K+ + + ++++E E
Sbjct: 753 VED---QDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENE 809
Query: 919 TD 920
D
Sbjct: 810 DD 811
>gi|429765450|ref|ZP_19297744.1| DNA gyrase, A subunit [Clostridium celatum DSM 1785]
gi|429186363|gb|EKY27310.1| DNA gyrase, A subunit [Clostridium celatum DSM 1785]
Length = 848
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/859 (44%), Positives = 558/859 (64%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+ + V++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+AM ELGL K ++KC
Sbjct: 7 KFIHVDINKEMKQCYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMQELGLEPNKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE T EL+ + GPDFPTGG+IMG GI AY TG+G++ VR K
Sbjct: 186 NLGEVIDGTIMLIDNPETTGLELMTCIKGPDFPTGGIIMGKSGIRAAYETGKGKVVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E ++ R +I+ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 246 TEIE---EENGRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A+P+IV+N L++ T +Q +F M+ +++ +P+ + LK++L +++F+ VV R
Sbjct: 303 IELKKDANPNIVLNLLFKHTKMQDTFGIIMLALVNNEPQILSLKQILSNYIEFQKEVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LDN+D VI I+R + + A L + F LSEKQA AI
Sbjct: 363 RTIFELEKAQARAHILEGLRIALDNIDEVISIIRSSKTGEIAKNTLIERFGLSEKQAIAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L +I++E++E+K R++ R
Sbjct: 423 LEMRLRRLTGLERDKIEEEYNELMKLINYLNSILASEEKLLSVIKEELLEIKARYNDERR 482
Query: 563 SMLEDADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+ +E ++DIDI I +E ++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 483 TQIEKI----VNDIDIEDLIQEEETVVTLTHSGYIKRISADTYSAQRRGGRGIQAMATKE 538
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + +V H VL+F++RG VY RAY+IP+ R A GT ++ ++ + ERI ++
Sbjct: 539 DDFVEHVLVTSTHSDVLFFTNRGRVYKKRAYEIPDAGRTAKGTNIINLIQIEQDERIETV 598
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ V + + +L M T G +KK L+ F ++R +G+IAI L GDEL V+ D +
Sbjct: 599 LTVRDNTAEGYLFMATKQGLVKKTPLSEFKNLRKSGLIAINLREGDELLKVKVTRGDADI 658
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ SQ+G I + +R + R G +M L++ D MDI A ++D
Sbjct: 659 IIVSQDGNAIKFNEKDVRPMGRTASGVKSMNLREDDVAVCMDI--AVDNED--------- 707
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR PL+ +++ VGLI YK S + V+G ++
Sbjct: 708 ----------LLVISENGFGKRTPLTEYKRQNRGGVGLITYKISEK----TGKVIGATVC 753
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+ +++++L++ SG RI V DIS+ +R A GV LMR KI + + I+ T+ E
Sbjct: 754 ---KPEDELMLINTSGIAIRINVSDISVTSRSAMGVTLMRTSEEEKIVAIAKIAGTDDEE 810
Query: 920 DLFLPSTSDKLATESGVSE 938
S D + E V E
Sbjct: 811 KDEQLSLDDCVDNEVAVEE 829
>gi|451816905|ref|YP_007453106.1| DNA gyrase subunit A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451782884|gb|AGF53852.1| DNA gyrase subunit A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 823
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/835 (44%), Positives = 544/835 (65%), Gaps = 34/835 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ LGL+ K ++KCAR+V
Sbjct: 11 VDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPDKGYRKCARIV 70
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEVLGK+HPHGD +VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE ++ +
Sbjct: 71 GEVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKI 130
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPHNLGE
Sbjct: 131 AVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLGE 189
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D LI NPE T+ +L+ + GPDFPTG IMG GI AY TGRG++ VR E+E
Sbjct: 190 IIDGTIMLIDNPEVTILDLMTKIKGPDFPTGATIMGKAGIRAAYETGRGKVVVRANAEIE 249
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
++ R +++ EIPY NK+ L+E IA+LV++K + GISD+RDESDR GMRIVIELK
Sbjct: 250 ---EENGRHKIVVTEIPYIVNKAKLIENIADLVKDKKITGISDLRDESDREGMRIVIELK 306
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A+P++V+N LY+ T LQ +F M+ ++D +PK + LKE+L+ ++DF+ V+ RR F
Sbjct: 307 RDANPNVVLNLLYKHTKLQDTFGIIMLALVDNEPKVLNLKEILRNYIDFQKEVITRRTIF 366
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L++ + R HI+EG+ + LDN+D VI I+R + ++ A L + F LSEKQA AILDM
Sbjct: 367 ELNKAEARAHILEGLKIALDNIDEVISIIRNSNTSEIARDTLIERFNLSEKQAQAILDMR 426
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LER K DE LM QI L +L+S + +L +I+ E++E+K ++S R S +E
Sbjct: 427 LRRLTGLERDKIEDELNELMRQIEYLNSILASEEKLLGVIKDELLEIKAKYSDERRSKIE 486
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
++D D+I +++++ ++ GY+KR+ +T++ Q RG G + +D +
Sbjct: 487 KI-INEIDIEDLIQEEDVVITLTSSGYIKRISADTYSSQRRGGKGIQAMTTKEDDFVEHL 545
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
++ H VL+F+++G VY RAY+IP+ R A GT L+ I+++ E+I +++ V++
Sbjct: 546 MITSTHSDVLFFTNKGRVYKLRAYEIPDAGRQAKGTNLINIIAIEPDEKIQTVLTVADGK 605
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ FL M T G +KK ++ F ++R G+IAI L GDEL V+ D + M +QNG
Sbjct: 606 KEGFLFMGTKQGIVKKTPVSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANIMMVTQNG 665
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+ + +R + R G A+ LK+ D MDI
Sbjct: 666 YAVKFNEKNVRHMGRTASGVKAINLKEDDVAVCMDI---------------------AVD 704
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
G LL +SE+G+GKR P+ ++ VGLI YK S + +VG ++ + D+
Sbjct: 705 GEELLVISENGYGKRTPIEEYKLQNRGGVGLITYKISEK----TGKLVGATIC---KVDD 757
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASLISVTEPETD 920
+++L++ SG RI V DIS+ +R A GV LMR K+ + A ++ E E D
Sbjct: 758 ELMLINSSGVAIRINVADISVTSRSAMGVTLMRTSDDEKVVAIAKILGSDESEED 812
>gi|334338621|ref|YP_004543601.1| DNA gyrase subunit A [Desulfotomaculum ruminis DSM 2154]
gi|334089975|gb|AEG58315.1| DNA gyrase, A subunit [Desulfotomaculum ruminis DSM 2154]
Length = 817
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/842 (42%), Positives = 549/842 (65%), Gaps = 32/842 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ +++P++++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+++HELGL+ K
Sbjct: 3 SLTGKVIPLDINSEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSVHELGLTPDKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K A +VG+V+ +HPHGD A+YDS+VR+AQDF+ RYPLI+GHGNFGS+D DP AAMRY
Sbjct: 63 YRKSAGIVGKVMQDYHPHGDAAIYDSMVRLAQDFASRYPLIQGHGNFGSVDGDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ L+ ML ADID++TV+F PN+D KEP++LP+++P LL+NG++GIAVGMATN
Sbjct: 123 TEAKMAKLTLEML-ADIDKETVDFAPNYDNRTKEPTILPSKIPNLLVNGSAGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + +I N + T+ EL++ + GPDFPTG IMG GI +AYRTGRG I
Sbjct: 182 IPPHNLGEVIDGILLMIDNADVTIDELMKVIKGPDFPTGAKIMGRDGIRNAYRTGRGSIK 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E + R +I+ EIPYQ NK+ L+EKIAELV++K ++GISD+RDESDR G
Sbjct: 242 IRAQVEIE--SKNNGRQAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISDLRDESDRRG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELK+ A+P +++N LY+ T +Q SF M+ ++D QP+ + L +VL +L+ +
Sbjct: 300 MRIVIELKKDANPHVILNLLYKHTQMQDSFGVIMLALVDNQPRVLNLSQVLFYYLEHQKD 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR RF+L + + R HIVEG+ + L NLD VI+ +RE+ + A L +F L+E Q
Sbjct: 360 VITRRTRFELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTDEAKKGLVQKFNLTEIQ 419
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AI++M LR LT LE +K E K L+ +I L+ +L+ K +L +I+ E++E+K +F+
Sbjct: 420 AEAIVEMRLRSLTALEVEKLEKEYKDLLSRIDYLKSVLADEKKVLGIIKDELVEVKRKFA 479
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R +++ + +G D D+I + M + I+ +GY+KR+ +T+ Q RG G + +
Sbjct: 480 DARRTVISNESAGDFDIEDLIDEESMAVTITNQGYIKRISADTYRNQKRGGKGITAMGTK 539
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + V H ++L+F+++G VY + +++PE R A GTPLV +L +S E +T+
Sbjct: 540 QEDFVKHLFVASTHHYLLFFTNKGKVYRLKVHEVPEAGRTAKGTPLVNLLYISGDEYVTT 599
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ EF D +LVM T G IKK L +++ R GIIAI L DEL V + +
Sbjct: 600 VIPIKEFIDDTYLVMATRQGIIKKTPLTEYNTSRRDGIIAIHLEQEDELVAVELTSGQEE 659
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++++NGM I S +RS+ R RG + L D + +MD++ A
Sbjct: 660 IILSTKNGMAIRFSEKDVRSMGRTARGVKGISLSPRDTVVNMDVVKA------------- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
G LL V+ +G GKR L +R G+I K ++ + L VVG +
Sbjct: 707 --------GSDLLVVTANGFGKRTSLEEYRSQTRGGKGIINIKTTSRNGL----VVGVQV 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E+ D+++++++ G + RI D+ R +GV LMR + +I + + + V++
Sbjct: 755 VEE---DDEIMIITAEGVIIRIFASDVPHYGRNTQGVTLMRTAETDRIVAIARV-VSDEN 810
Query: 919 TD 920
TD
Sbjct: 811 TD 812
>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
Length = 807
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/837 (43%), Positives = 550/837 (65%), Gaps = 39/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++ +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL++M+ELG++ K ++KC
Sbjct: 7 KVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
++ ++ ML I+++TV+F+PNFD +KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 127 MDKITVEMLRG-INKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +I NPE T+ EL+ + GPDFPT G+I+G GI AY TGRG+I VR K
Sbjct: 186 NLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE++ K++ ++I EIPYQ NKS L+E +A+LV+NK +DGISDIRDESDR GMRIV
Sbjct: 246 TEIQEEKGKNR---IVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR A+ +I +N LY+ T +Q +F M+ ++D +PK + LK++L +L F+ ++ R
Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + + R HI+EG+ + LD +D VI ++R + + A L D+F LSEKQA AI
Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E LM+ I L+E+L ++ +L +I+ E+IE+++++ R
Sbjct: 423 LDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGDERR 482
Query: 563 SMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+ ++ ++ DDI D+I +E+++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 483 TEIQISN----DDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKE 538
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + + H H+L+F+++G VY + Y+IP+ R A GT LV +L L E+I ++
Sbjct: 539 DDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAV 598
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I E D + +M T G +KK +N ++SIR G+ AI L GDEL V+ T D V
Sbjct: 599 ISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTGDSEV 658
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NG I S +R RNT G A+ L+ D +MDI
Sbjct: 659 LIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDI----------------- 701
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
S+ +L VSE+G GKR P++ + G+I YK + + L +VG +
Sbjct: 702 ----ASNKEDILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGL----IVGARVV 753
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+D +++++L++ S R+ V DIS +R A GV LMR E ++ + + I+ TE
Sbjct: 754 KD---EDEMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807
>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
gi|404487368|ref|YP_006711474.1| DNA gyrase subunit A [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680394|ref|ZP_17655233.1| DNA gyrase subunit A [Bacillus licheniformis WX-02]
gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346364|gb|AAU38998.1| DNA gyrase alpha subunit GyrA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
gi|383441500|gb|EID49209.1| DNA gyrase subunit A [Bacillus licheniformis WX-02]
Length = 822
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/837 (44%), Positives = 556/837 (66%), Gaps = 35/837 (4%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+KK
Sbjct: 7 PQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ RY L++GHGNFGS+D D AAAMRYTE
Sbjct: 67 SARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEA 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S +L DI++DT+++ N+D S+KEP ++PAR P LL+NGA+GIAVGMATNIPP
Sbjct: 127 RMSKIS-MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
H LGE++D + A+ NP+ TL EL+E +PGPDFPT GLI+G GI AY TGRG IT+R
Sbjct: 186 HQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRA 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K ++E ++ S + +II EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMRI
Sbjct: 246 KAQIE--ETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL+R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 304 VIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIR 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR F+L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA A
Sbjct: 364 RRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFSLTEKQAQA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LER+K +E ++L+E I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEVKERFNDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + + ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK + + N
Sbjct: 484 RTEIVTSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQKRG--GKGIQGMGTNE 541
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +I
Sbjct: 542 DDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINAI 601
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IPV EF + +L T +G K+ L+ F++IR G+IA+ L DEL VR + +
Sbjct: 602 IPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELIAVRLTDGNKQI 661
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NG++I +R + R G + L D D + M+I+ EDSH
Sbjct: 662 IIGTKNGLLIRFPETDVRQMGRTAAGVKGINLTDDDVVVGMEIL-----------EEDSH 710
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+E G+GK P S +R GL K + E+ + V V A
Sbjct: 711 ----------VLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKIT-ENNGSLVTVK----A 755
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
GE D +++++ SG + R+ ++DIS R +GV L+RL + + +L+ E
Sbjct: 756 TTGEED--LMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDE 810
>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
Length = 816
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/826 (44%), Positives = 547/826 (66%), Gaps = 39/826 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+S R+ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP+
Sbjct: 1 MSERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPY 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRYT
Sbjct: 61 KKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMATNI
Sbjct: 121 EARMSKIS-MELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNI 179
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPH LGE++D L L+ +P+ T+ EL+EY+PGPDFPTG I+G GI AY TGRG IT+
Sbjct: 180 PPHQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITL 239
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E ++ + +I++E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDRSGM
Sbjct: 240 RAKAEIE--QKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGM 297
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE++R +V+N+LY+ TALQ+ F NM+ ++DGQPK + LK+ LQ +LD + V
Sbjct: 298 RIVIEVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIV 357
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR +F+L++ + R HI+EG+ + LD+LD VI ++R++ + A L +F+LSEKQA
Sbjct: 358 IRRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQA 417
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L+RLT LER+K E + L++ I L+ +L+ + +LQ+I E++E+K +F+
Sbjct: 418 QAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFND 477
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + + +DD D+I + +++ ++ +GY+KR+ +T+ Q RG G+ + +
Sbjct: 478 YRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRG--GRGIQGMNT 535
Query: 620 N--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
N D + ++ HD VL+F+++G VY A+ Y+IPE +R A G P+V +L++ E I
Sbjct: 536 NEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNLLNIEKDEVIN 595
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I + +F D FL T G K+ L+ F++IR G+IAI L GDEL V+
Sbjct: 596 TVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDELISVKLTDGHK 655
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + ++NGM+I +RS+ R G A+ L GD++ M+ +L+ D E
Sbjct: 656 HIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSGDEVVGME----SLNGDEE----- 706
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVG 855
+L V+ +G+GKR P S +R G+ + + D +A V G
Sbjct: 707 ------------ILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTVTG 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+E ++L++ SG + R+ V DISI R +GV L+RL+
Sbjct: 755 ---------EEDLMLMTASGVMIRMAVSDISIMGRNTQGVKLIRLD 791
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
I+ D L +++G KR ++F N++N G I L D + + H H
Sbjct: 600 IEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIH---LHEGDELISVKLTDGHKH 656
Query: 635 VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVML 694
++ + G++ + R AAG V+ ++L G+ ++ + GD+ ++++
Sbjct: 657 IIVGTKNGMLIRFPETDVRSMGRTAAG---VKAITLCSGD---EVVGMESLNGDEEILIV 710
Query: 695 TMNGYIKKVSLNLF-------SSIRTTGI-------IAIQLVPGDELKWVRCCTNDDLVA 740
T NGY K+ + + I+T I +A++ V G+E DL+
Sbjct: 711 TRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTVTGEE----------DLML 760
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD 773
M + M+ ++ DI + RNT+G +RL +
Sbjct: 761 MTASGVMIRMAVSDI-SIMGRNTQGVKLIRLDE 792
>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
gi|337735216|ref|YP_004634663.1| DNA gyrase subunit A [Clostridium acetobutylicum DSM 1731]
gi|384456725|ref|YP_005669145.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
gi|18273029|sp|P94605.2|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
ATCC 824]
gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
gi|336292141|gb|AEI33275.1| DNA gyrase subunit A [Clostridium acetobutylicum DSM 1731]
Length = 830
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/817 (44%), Positives = 541/817 (66%), Gaps = 32/817 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EM YI Y+MSV++ RALPDVRDGLKPVHRRIL++MHELGL+ K ++KC
Sbjct: 6 KVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VY +LVR+AQDF+LRY ++ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI ++TV+F+PNFD +KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MNKIALEMV-RDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI NPEAT+ EL+ + GPDFPT G+IMG GI AY TGRG+ITVR K
Sbjct: 185 NLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E+ D+ ++ +II EIPYQ NK+ LVE IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 245 SEIEVEDNGKQK--IIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ A+ +I++N LY+ T LQ +F NM+ ++D +P+ + LK++LQ ++ F+ V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + R HI+EG+ + LD++D VI ++R + + A L D+F LSEKQA AI
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K DE LM+ I +L+ +L+ IL +I E+ E+K ++ R
Sbjct: 423 LDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKYGDERK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E A++ +D D+I + +++ ++ GY+KR+ +T+ Q RG G + +D
Sbjct: 483 TAIERAEN-DIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + + H+++L+F+++G +Y +AY+IPE R A GT +V +L L E+I ++I +
Sbjct: 542 VENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVISI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + FLVM T G IKK + ++ +IR +G+IAI L DEL VR DD + +
Sbjct: 602 KEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIIIV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G+ I + +R L RN G + LK+ D + M++ + S+V
Sbjct: 662 TNKGLAIRFNEVDVRPLGRNALGVKGITLKEDDFVVGMEV-------------PNQESDV 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
L VSE+G GKR + ++ GLI YK S D+ +VG + EDG
Sbjct: 709 --------LVVSENGFGKRTHVGEYKCQHRGGKGLITYKVS--DKTGK--LVGVRMVEDG 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
++++L++ G RI V DIS +R A GV LMR
Sbjct: 757 ---DELMLINNLGIAIRINVSDISTTSRNAMGVTLMR 790
>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
Length = 806
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/837 (43%), Positives = 550/837 (65%), Gaps = 39/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++ +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL++M+ELG++ K ++KC
Sbjct: 6 KVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
++ ++ ML I+++TV+F+PNFD +KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MDKITVEMLRG-INKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +I NPE T+ EL+ + GPDFPT G+I+G GI AY TGRG+I VR K
Sbjct: 185 NLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE++ K++ ++I EIPYQ NKS L+E +A+LV+NK +DGISDIRDESDR GMRIV
Sbjct: 245 TEIQEEKGKNR---IVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR A+ +I +N LY+ T +Q +F M+ ++D +PK + LK++L +L F+ ++ R
Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + + R HI+EG+ + LD +D VI ++R + + A L D+F LSEKQA AI
Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E LM+ I L+E+L ++ +L +I+ E+IE+++++ R
Sbjct: 422 LDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGDERR 481
Query: 563 SMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+ ++ ++ DDI D+I +E+++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 482 TEIQISN----DDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKE 537
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + + H H+L+F+++G VY + Y+IP+ R A GT LV +L L E+I ++
Sbjct: 538 DDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAV 597
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I E D + +M T G +KK +N ++SIR G+ AI L GDEL V+ T D V
Sbjct: 598 ISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTGDSEV 657
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NG I S +R RNT G A+ L+ D +MDI
Sbjct: 658 LIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDI----------------- 700
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
S+ +L VSE+G GKR P++ + G+I YK + + L +VG +
Sbjct: 701 ----ASNKEDILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGL----IVGARVV 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+D +++++L++ S R+ V DIS +R A GV LMR E ++ + + I+ TE
Sbjct: 753 KD---EDEMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806
>gi|415883917|ref|ZP_11545946.1| DNA gyrase subunit A [Bacillus methanolicus MGA3]
gi|387591712|gb|EIJ84029.1| DNA gyrase subunit A [Bacillus methanolicus MGA3]
Length = 842
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/827 (44%), Positives = 549/827 (66%), Gaps = 39/827 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN R+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRILFAMH+LG+ + K
Sbjct: 5 PN--SRVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGMHADK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VGEV+GK+HPHGD+AVYDS+VRMAQDF+ RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYDSMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S+KEP +LP+R P LL+NGASGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGASGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + AL +P+ T+QEL+E +PGPDFPT GLI+G GI AY TGRG I
Sbjct: 182 NIPPHQLGEVIDGVLALSKDPDITIQELMEVIPGPDFPTAGLILGKRGIRKAYETGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
T+R + E+E S K + +I+KE+PYQ NK+ L+EKIAELV +K +DGISD+RDESDR+
Sbjct: 242 TLRARVEIEQ-KSNGKEV-IIVKELPYQVNKAKLIEKIAELVRDKKIDGISDLRDESDRN 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE+++ A+ ++++N+LY+ TALQ+SF NM+ ++DGQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRKDANANVLLNNLYKQTALQTSFGINMLALVDGQPKVLNLKQCLQHYLDHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L F LSEK
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDHLDEVITLIRNSQTTDIAREGLMTRFNLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E ++L++ I +L+ +L+ + +L++I +E+ E+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKAILADEEKVLEIIREELSEIKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + ++D D+IP + +++ ++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDERRTEIVAGGIEFIEDEDLIPRENVVITLTHNGYIKRLPVSTYRAQKRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + I HD +L+F+++G VY A+ Y+IPE +R A G P+V +L + E
Sbjct: 538 GTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIVNLLEVDKDEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
I +IIPV EF + FL T G K+ L+ F+ IR G+IA+ L GDEL VR
Sbjct: 598 INAIIPVEEFDDNWFLFFTTKEGISKRSPLSSFAHIRNNGLIALNLREGDELISVRLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++NGM+I +RS+ R G + L +GD++ M+++
Sbjct: 658 SKHIIIGTKNGMLIRFPETDVRSMGRTATGVKGISLDEGDEVIGMEVL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVV 854
E+++ +L V+++G+GKR P S +R G+ + ++ L A+ V
Sbjct: 706 EENND---------ILIVTKNGYGKRTPASEYRVQGRGGKGIKTCNITEKNGNLVAMKAV 756
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ G + RI V IS+ R +GV L+RLE
Sbjct: 757 ------TGEED--LMLITTGGVLIRIDVGGISVMGRNTQGVKLIRLE 795
>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
SI]
gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
SI]
Length = 808
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/840 (43%), Positives = 552/840 (65%), Gaps = 34/840 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
P+++ +++P++++EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AMH LGL+ +
Sbjct: 2 PSMTGKVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDR 61
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +K A +VGEVL K+HPHGD AVYD+LVR+AQDF+ RYPL+ GHGNFGS+D D AAAMR
Sbjct: 62 PHRKSAYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMR 121
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ ++ ML ADI+++TVNF+PN+D EP++LPAR+P LL+NG+SGIAVGMAT
Sbjct: 122 YTEARMARITLEML-ADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMAT 180
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPHNLGE++D + LI NP+A +++L+ + GPDFPTGG IMG GI DAYRTGRG I
Sbjct: 181 NIPPHNLGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSI 240
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR + +E + R +++ EIPYQ NK+ L+EKIAELV++K +DGISD+RDESDR
Sbjct: 241 KVRAQASIEKIGGG--RHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRR 298
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIEL+R A+P +V+N LY+ T +Q SF M+ +++G+P+ + LKEVL +L +
Sbjct: 299 GMRIVIELRRDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQK 358
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
VV RR RF+L++ + R HIVEG+ + + +LD VI+ +R + + A AL ++F L+EK
Sbjct: 359 DVVVRRTRFELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEKFGLTEK 418
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA+AI++M LR+LT LER+K E + L+E+I L +L + +L +I+ E++ +K +F
Sbjct: 419 QAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDERKVLGIIKDELLAVKKKF 478
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ PR + + ++ ++ D+IP +++++ I+ +GY+KR+ +T+ Q RG G +
Sbjct: 479 ADPRRTAI-TSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMGT 537
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+ D + + H L+F+++G VY + ++IPE R A GT +V +L + E+IT
Sbjct: 538 KEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKGTAIVNLLYIGSEEKIT 597
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++IPV EF Q+L M T G +KK LN + + R GIIAI L GD L V+ +
Sbjct: 598 TVIPVREFDPAQYLFMATKRGIVKKTPLNEYDTSRRDGIIAISLNEGDHLVDVKLTGGRE 657
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A++ G+ I + +R R T+G + L D++ M++ P++
Sbjct: 658 EIILATRGGLAIRFLEEEVRPTGRVTQGVKGINLVGDDEVVGMEVA----------RPDE 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGF 856
+LL V+ +G GKR LS +R G+I K +A + L A+ V
Sbjct: 708 -----------FLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARNGPLVAIQAV-- 754
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ +E+V+++S G + R+K +DI + R +GV LMRL+ + +A+ + E
Sbjct: 755 ------KGEEEVMMISAEGIIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETEE 808
>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
[Ricinus communis]
gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
[Ricinus communis]
Length = 540
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/486 (76%), Positives = 413/486 (84%), Gaps = 12/486 (2%)
Query: 17 TLRFSSSFFLFHN--HCRHARFLSSPRRFLSFPPSRPPPSSRTPILASKDEERNG---NG 71
T RFS L H H RFLS+ S+ +P + R ++K+E + NG
Sbjct: 37 TFRFSR---LRHQQRHLSDLRFLSTTLTPSSWTHLQPVQARRRVYTSAKEESHSNEEQNG 93
Query: 72 SVATV---GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAM 128
S+ V R+V ELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRILFAM
Sbjct: 94 SLLVVKDSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAM 153
Query: 129 HELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSI 188
HELGLSSRKPFKKCARVVGEVLGKFHPHGD+AVYD+LVRMAQDFSLR PLI+GHGNFGSI
Sbjct: 154 HELGLSSRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSI 213
Query: 189 DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGA 248
DADP AAMRYTECRLEAL+EA+LLAD++ DTV+FVPNFD+SQKEPSLLPARLPTLLLNG+
Sbjct: 214 DADPPAAMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGS 273
Query: 249 SGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILD 308
SGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGIL+
Sbjct: 274 SGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILE 333
Query: 309 AYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGIS 368
AYRTGRGRI VRGKTEVE LDSK+KR VIIKEIPYQTNK+ LVEKIAELVENK LDG+S
Sbjct: 334 AYRTGRGRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVS 393
Query: 369 DIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEV 428
DIRDESDRSGMRIVIE+KRG+DPSIV+N+LYRLT LQSSFSCNMVGILDGQPKQMGLK++
Sbjct: 394 DIRDESDRSGMRIVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDL 453
Query: 429 LQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
LQA FRCSVVERRARFKL Q +ERRHIVEGI++GLDNLD VIRI++EA SN+ ASA L
Sbjct: 454 LQASY-FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKEASSNAAASAGL 512
Query: 489 KDEFKL 494
+ F
Sbjct: 513 RTVFNF 518
>gi|433443706|ref|ZP_20408962.1| DNA gyrase, A subunit [Anoxybacillus flavithermus TNO-09.006]
gi|432001979|gb|ELK22842.1| DNA gyrase, A subunit [Anoxybacillus flavithermus TNO-09.006]
Length = 816
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/826 (44%), Positives = 547/826 (66%), Gaps = 39/826 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+S R+ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP+
Sbjct: 1 MSERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPY 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGSID D AAAMRYT
Sbjct: 61 KKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMATNI
Sbjct: 121 EARMSKIS-MELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNI 179
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPH LGE++D L L+ +P+ T+ EL+EY+PGPDFPTG I+G GI AY TGRG IT+
Sbjct: 180 PPHQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITL 239
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E ++ + +I++E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDRSGM
Sbjct: 240 RAKAEIE--QKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGM 297
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE++R +V+N+LY+ TALQ+SF NM+ ++DGQPK + LK+ LQ +L+ + V
Sbjct: 298 RIVIEVRRDVSAHVVLNNLYKQTALQTSFGINMLALVDGQPKVLNLKQCLQHYLEHQKVV 357
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR +F+L++ + R HI+EG+ + LD+LD VI ++R++ + A L +F+LSEKQA
Sbjct: 358 IRRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQA 417
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L+RLT LER+K E L+ I +L+ +L+ + +LQ+I E++E+K +F+
Sbjct: 418 QAILDMRLQRLTGLEREKIEQEYAELLGLIARLKAILADEQKVLQIIRDELLEIKEKFND 477
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + + +DD D+I + +++ ++ +GY+KR+ +T+ Q RG G+ + +
Sbjct: 478 HRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRG--GRGIQGMNT 535
Query: 620 N--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
N D + ++ HD VL+F+++G VY A+ Y+IPE +R A G P+V +L++ E I
Sbjct: 536 NEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNLLNIEKDEVIN 595
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I + +F D FL T G K+ L+ F++IR G+IAI L GDEL V+
Sbjct: 596 TVIAIEQFREDAFLFFTTKQGTAKRSPLSSFANIRNHGLIAIHLHEGDELISVKLTDGHK 655
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + ++NGM+I +RS+ R G A+ L GD++ M+ +L+ D E
Sbjct: 656 HIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCPGDEVVGME----SLNGDEE----- 706
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVG 855
+L V+ +G+GKR P S +R G+ + + D +A V G
Sbjct: 707 ------------ILIVTRNGYGKRTPASEYRVQSRGGKGIKTCNITEKNGDVVAVKTVTG 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+E ++L++ SG + RI V DIS+ R +GV L+RL+
Sbjct: 755 ---------EEDLMLMTASGVMIRIAVSDISVMGRNTQGVKLIRLD 791
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 36/215 (16%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
I+ D L +++G KR ++F N++N G I L D + + H H
Sbjct: 600 IEQFREDAFLFFTTKQGTAKRSPLSSFANIRNHGLIAIH---LHEGDELISVKLTDGHKH 656
Query: 635 VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVML 694
++ + G++ + R AAG V+ ++L G+ ++ + GD+ ++++
Sbjct: 657 IIVGTKNGMLIRFPETDVRSMGRTAAG---VKAITLCPGD---EVVGMESLNGDEEILIV 710
Query: 695 TMNGYIKKVSLNLF-------SSIRTTGI-------IAIQLVPGDELKWVRCCTNDDLVA 740
T NGY K+ + + I+T I +A++ V G+E DL+
Sbjct: 711 TRNGYGKRTPASEYRVQSRGGKGIKTCNITEKNGDVVAVKTVTGEE----------DLML 760
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGD 775
M + M+ ++ DI + RNT+G +RL DG+
Sbjct: 761 MTASGVMIRIAVSDI-SVMGRNTQGVKLIRL-DGE 793
>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
Length = 823
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/854 (43%), Positives = 556/854 (65%), Gaps = 39/854 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL++M+ELGL+ K ++KC
Sbjct: 6 KILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVYD+LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML I+++TV+FVPNFD +KEPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MNKITLEMLRG-INKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +I NP+ T+ EL+ + GPDFPT G+I+G GI AY TGRG+I VR K
Sbjct: 185 NLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + +++ +II EIPYQ NKS L+E +A+LV+NK +DGISDIRDESDR GMRIV
Sbjct: 245 AEIEEVKGRNR---IIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ +++ +PK + LK++L +L F+ +V R
Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + + R HI+EG+ + LD++D VI ++R + + A L EF LSEKQA AI
Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E LME I L+E+L +++ +L++I+ E+IE+++++ R
Sbjct: 422 LDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKYGDERK 481
Query: 563 SMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+ ++ ++ DDI D+I E+++ ++ GY+KR+ +T++ Q RG G +
Sbjct: 482 TEIQISN----DDINIEDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKE 537
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + + H+++L+F+++G VY + Y+IP+ R A GT LV ++ L E+I ++
Sbjct: 538 DDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQGDEQIQAV 597
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I E D + +M T G IKK ++ ++SIR G+ AI L DEL VR T + +
Sbjct: 598 ISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMTTGESEI 657
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NG I S D +R RNT G A+ L+ GD +MDI+ D
Sbjct: 658 LIFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIAVAMDIV-------------DKS 704
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+V L +SE+G GKR P+S + G+I YK + + L +VG +
Sbjct: 705 QDV--------LVISENGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGL----IVGARVV 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+D +++++L++ S R+ V +IS+ R GV LMR + ++ + + I+ ++ +
Sbjct: 753 KD---EDEMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDTS 809
Query: 920 DLFLPSTSDKLATE 933
D DK E
Sbjct: 810 DNTSNDIDDKKVEE 823
>gi|410666395|ref|YP_006918766.1| DNA gyrase subunit alpha [Thermacetogenium phaeum DSM 12270]
gi|409104142|gb|AFV10267.1| DNA gyrase subunit alpha [Thermacetogenium phaeum DSM 12270]
Length = 815
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/821 (45%), Positives = 555/821 (67%), Gaps = 38/821 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ PV+++EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+AM + G++ KP KK A
Sbjct: 7 VSPVDINEEVKKSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMFDAGITPDKPHKKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVG VL +FHPHGD AVYD+LVR+AQDFS RYPL+ GHGNFGSID D AAMRYTE RL
Sbjct: 67 VVVGNVLARFHPHGDAAVYDALVRLAQDFSCRYPLVDGHGNFGSIDGDAPAAMRYTEVRL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+ ML ADIDQ+TV+FVPN+D+SQKEP++LP+R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 127 APLALQML-ADIDQETVDFVPNYDDSQKEPAVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D L LI +PEA++ +L++Y+PGPDFP+GG I+G GI +AY TGRG + VRG+
Sbjct: 186 LREVIDGLVYLIDHPEASVADLMQYIPGPDFPSGGSILGLNGIKEAYETGRGALVVRGRA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + R ++I E+P+Q NK+ LVE+IAELV K LDGISD+RDESDRSGMR+V+
Sbjct: 246 EIE--KTSGGRSQIVITELPFQVNKARLVERIAELVREKKLDGISDLRDESDRSGMRVVL 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+R A+P +++N LY+ T LQ +F M+ ++DG P+ + LKE+L +L+ + +VV RR
Sbjct: 304 ELRREANPRVILNRLYKHTKLQDTFGVIMLALVDGTPRILNLKELLSHYLEHQVTVVRRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++++L + +ER HIV+G+++ LD++D VI ++R + ++ A L F+LSEKQA AIL
Sbjct: 364 SQYQLRRAEERLHIVDGLVIALDHIDAVISLIRRSHTDEEARRGLMGNFQLSEKQAQAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K ++E + L E+I L+ELLS+ I ++ QE++E++ +F R +
Sbjct: 424 DMRLRRLTGLEREKVLEEKRELEERIAGLKELLSNESLIRGVVRQELLEVREKFGDDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ + + ++ DIIP + +++ ++ +GY+KR+ NT+ Q+RG G + R D +
Sbjct: 484 LIAEK-APEVRKEDIIPEELVVITLTRRGYIKRIPLNTYRGQHRGGRGITALTTRDEDFV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
H +L+F+++G VY + Y IPE +R A GT LV +L L+ E +T++IP+
Sbjct: 543 EQLFAASTHHFLLFFTNKGKVYRLKVYDIPEGSRQAKGTALVNLLPLAADEVVTAVIPLR 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F D++L+M T G +KK L+ + S R GIIA++L PGDEL VR + + +A+
Sbjct: 603 QFRDDRYLLMATRQGLVKKGLLSDYDSSRRDGIIALRLHPGDELIGVRLSEGREEIILAT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM + + + +R + R G + +RL GD++ MD +
Sbjct: 663 KKGMALCFNEEDVRVMGRAASGVLGIRLDPGDEVVGMD---------------------R 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLAE 860
G +L V+E G+GKR P + +R GLI K + DR LA V VV
Sbjct: 702 FREGSQVLVVTERGYGKRTPAADYRVQKRGGRGLITLKVT--DRNGCLAGVKVV------ 753
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ ++++L+S ++ RI+V +I +Q R +GV LMRL+
Sbjct: 754 --DDRDEILLMSSEDSMIRIRVGEIPVQGRNTQGVKLMRLK 792
>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
Length = 835
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/818 (43%), Positives = 539/818 (65%), Gaps = 35/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV+++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ LGL+ K ++KC
Sbjct: 8 KVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE T+ +L+ + GPDFPTG IMG GI AY TGRG+I VR
Sbjct: 187 NLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRAD 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +++ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 247 AEIE---EENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR A+P++V+N LY+ T LQ SF M+ +++ +P+ + +KE+L ++D++ V+ R
Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+D VI I+R + + A L ++F LS+KQA AI
Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQATAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER+K +E LM+QI L+ +L+S + +L +I+ E+ ++K ++S R
Sbjct: 424 LEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++D D+I +++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 484 TKIEKV-VNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTKEDDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I +++ V
Sbjct: 543 VEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQTVLTV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
S+ + FL M T NG +KK ++ F ++R G+IA+ L DEL V+ D + +
Sbjct: 603 SDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +R++ R G A+ LKD D MDI
Sbjct: 663 TQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDI-------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G LL +SE+G GKR P+S ++ VGLI YK S + +L +
Sbjct: 703 -AVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATIC------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ D++++L++ SG RI V DIS+ R A GV LMR
Sbjct: 755 -KVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMR 791
>gi|443631607|ref|ZP_21115788.1| DNA gyrase subunit A [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349412|gb|ELS63468.1| DNA gyrase subunit A [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 821
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/835 (43%), Positives = 554/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+QEL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF D +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNADLYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L AV
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDIDDISTTGRVTQGVRLIRMAEEEHVATVALV 806
>gi|150387860|ref|YP_001317909.1| DNA gyrase subunit A [Alkaliphilus metalliredigens QYMF]
gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
Length = 830
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/833 (45%), Positives = 545/833 (65%), Gaps = 32/833 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP+ + EM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M ELG++ KP KK A
Sbjct: 8 IVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD AVYD++VR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE RL
Sbjct: 68 RIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTEARL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S M+ DI+++TV++ PNFDE+ KEP++LP+R P LL+NG++GIAVGMATNIPPHN
Sbjct: 128 SKISVEMI-RDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + LI + EA +++ +E++ GPDFPTGG+I+G GI DAY TGRG+I VR K
Sbjct: 187 LGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKVRAKA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + SK R +I+ EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR GMRIVI
Sbjct: 247 SIEEM-SKG-RQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+ ++V+N LY+ T L+ +F M+ I+DGQPK + LKEVL +L+ + ++ RR
Sbjct: 305 ELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIVRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L++ ++R HI+EG+ + LDNLD VI+++R + + A A L ++F LSEKQA AIL
Sbjct: 365 TKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEKFSLSEKQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L++LT LE +K +E K L++ I L+E+L++ + +L +I++E++E++ +++ R +
Sbjct: 425 DMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANERLLLDIIKEELLEIREKYADKRRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G ++ ID++ +++++ ++ GY+KR+ +T+ Q RG G S R D +
Sbjct: 485 EIA-IDPGSINMIDLVDEEDVVITLTHFGYIKRLPIDTYRSQKRGGKGISGVTTRDEDFV 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H +L+F++ G VY Y+IPE R A GT +V +L LS E+I ++IPV
Sbjct: 544 EKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQAKGTAIVNLLQLSANEKIAAVIPVD 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+Q+LVM T G IKK L F + R TG++AI + DEL VR + + M +
Sbjct: 604 RDCNEQYLVMATQKGIIKKTELCQFDNTRKTGLMAINIREDDELISVRLINKEQEIFMIT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
GM I D +R + R G + L + D + +M+++ ED+
Sbjct: 664 SQGMSIRFKEDNVRDMGRTAMGVKGINLAEKDYVVAMEVL------------EDNKD--- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
LL VSE+G GKR LS +R G+ YK S + ++G + ED
Sbjct: 709 ------LLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSKK----TGNLIGAKIVED-- 756
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++++L++ G V R+ V+ IS R RGV LM I S + I E
Sbjct: 757 -HDEILLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQIPYHE 808
>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
Length = 822
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/841 (43%), Positives = 552/841 (65%), Gaps = 41/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P+V +L + GE + +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVNLLEVDKGEWVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDMN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
GE D ++L++ +G + R+ V IS R +GV L+RLE ++ + + E
Sbjct: 758 ---TGEED--IMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEE 812
Query: 918 E 918
E
Sbjct: 813 E 813
>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
Length = 821
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P+V +L + GE + +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVNLLEVDKGEWVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDMN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLE 796
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 24/248 (9%)
Query: 560 PRLSMLEDADSGQLDDIDIIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKS 613
P +++LE D G+ + IIP +D+ L +++G KR ++F N++ G I S
Sbjct: 586 PIVNLLE-VDKGEWVNA-IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAIS 643
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
LR D + + ++ + G++ + RNAAG V+ ++L D
Sbjct: 644 ---LREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGDE 697
Query: 674 ERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWV 730
+++ + V E D ++++T NGY K+ ++ + S G+ + + +L V
Sbjct: 698 DQVVGMEIVEE---DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVAV 754
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ T ++ + + + G++I D I + RNT+G +RL++ ++A++ A KD
Sbjct: 755 KSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATV----AKAQKD 810
Query: 791 LERTPEDS 798
E E++
Sbjct: 811 EEDGSEEA 818
>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
Length = 814
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/840 (44%), Positives = 533/840 (63%), Gaps = 39/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I V++ E+M +Y+ Y+MSV++ RALPD RDGLKPVHRRIL+AM ++G+ + +KK A
Sbjct: 6 IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLGK+HPHGD AVYD++ RMAQDFS+RYPLI G GNFGSID D AAMRYTE RL
Sbjct: 66 RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E LLADID+DTV+F NFD + KEP +LPARLP LLLNG+SGIAVGMAT+IPPHN
Sbjct: 126 NPMAEE-LLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHN 184
Query: 264 LGELVDVLCALIHN----PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
L E+ + LI N + T ++L+ +PGPDFPTGG+I+G GIL Y TGR R+TV
Sbjct: 185 LREVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTV 244
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
RG +E + K R +II EIPYQ NK+ L+E+IAELV LD ISD+RDESDR GM
Sbjct: 245 RGVARIE--EQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
IVIEL+RGA P V+N LY+ T LQS+FS NM+ ++D +P+ + LK LQ F+ R V
Sbjct: 303 SIVIELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR RF+L + + R HI+EG+++ L NLD VI I+R++P TA L + FKL+E QA
Sbjct: 363 LTRRTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIERFKLTEVQA 422
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM LRRL LER+K DE + + E+I LE+LL++ + IL LI+ ++ EL ++
Sbjct: 423 QAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLLANPRKILALIQTDMKELAEKYGD 482
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + + D++ ++ +L+ ++ +GY+KR+ + + QNRG G +++
Sbjct: 483 NRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKRVNASAYRTQNRGGKGVIGQEVKE 542
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D ++ + R D +L+F+DRG VY+ +A++IPE R G P + +L+L ERIT
Sbjct: 543 EDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTDKGIPAINVLALEANERITVA 602
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ V FA ++ +M T+NG +K+V L+ F S+R +G+IAI L GD+L WVR V
Sbjct: 603 VAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVRLTDGSRHV 662
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++ G + + +RS+ R G + L++GD++ASMDI+
Sbjct: 663 LLVTEQGYTVRFAESEVRSMGRQASGVTGISLREGDRVASMDIV---------------- 706
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSF--RKLPLNRVGLIGYKFSAED-RLAAVFVVGF 856
G LL V+ G GKRV L F + + V + +K A+ +LA VV
Sbjct: 707 -----EEGGGLLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVV-- 759
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ +++V L S SG R+KV I + R A+GV +M L+ + S + I E
Sbjct: 760 ------QENDEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEE 813
>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 835
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/818 (43%), Positives = 538/818 (65%), Gaps = 35/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV+++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+++ LGL+ K ++KC
Sbjct: 8 KVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 MNKIAVEML-RDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE T+ L+ + GPDFPTG IMG GI AY TGRG+I VR
Sbjct: 187 NLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRAD 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +++ EIPYQ NK+ L+E IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 247 AEIE---EENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR A+P++V+N LY+ T LQ SF M+ +++ +P+ + +KE+L ++D++ V+ R
Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+D VI I+R + + A L ++F LS+KQA AI
Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQATAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER+K +E LM+QI L+ +L+S + +L +I+ E+ ++K ++S R
Sbjct: 424 LEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++D D+I +++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 484 TKIEKV-VNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTKEDDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I +++ V
Sbjct: 543 VEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQTVLTV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
S+ + FL M T NG +KK ++ F ++R G+IA+ L DEL V+ D + +
Sbjct: 603 SDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +R++ R G A+ LKD D MDI
Sbjct: 663 TQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDI-------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G LL +SE+G GKR P+S ++ VGLI YK S + +L +
Sbjct: 703 -AVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATIC------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ D++++L++ SG RI V DIS+ R A GV LMR
Sbjct: 755 -KVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMR 791
>gi|423672735|ref|ZP_17647674.1| DNA gyrase subunit A [Bacillus cereus VDM062]
gi|401311249|gb|EJS16556.1| DNA gyrase subunit A [Bacillus cereus VDM062]
Length = 823
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/841 (43%), Positives = 552/841 (65%), Gaps = 41/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
GE D ++L++ +G + R+ V IS R +GV L+RLE ++ + + E
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDEE 812
Query: 918 E 918
E
Sbjct: 813 E 813
>gi|269837749|ref|YP_003319977.1| DNA gyrase subunit A [Sphaerobacter thermophilus DSM 20745]
gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
Length = 836
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/832 (44%), Positives = 544/832 (65%), Gaps = 34/832 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+++ EM SY+ Y+MSV++ RALPDVRDGLKPV RRIL+AMHE+GL + F+K A +V
Sbjct: 9 IDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSAGIV 68
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEVL +HPH D+AVYD+LVRM Q FSLRYPL+ G GNFGS+D D AAAMRYTE +L A+
Sbjct: 69 GEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKLAAI 128
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
SE M L DID++TV+F PN+D +EP +LPA+LP LL+NGA+GIAVGMATNIPPHNL E
Sbjct: 129 SEEM-LQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNLAE 187
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+ D L LI NPEAT +LLE + GPDFPTGG+I+G GI AY TG+GR+ +R +T +E
Sbjct: 188 VCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTHIE 247
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + R +I+ E+PYQ NK+ L+EKIAELV+ ++GI D+RDESDR+GMR+VIELK
Sbjct: 248 EM-PRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIELK 306
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRAR 445
R A P V+N+L++ T LQ +F NM+ ++DG QP+ + L+ +LQ +LD R VV RR
Sbjct: 307 RDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRTE 366
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
+L + + R HI+EG+ + LD+LD VI+ +R++ + +A L + F +E QA+AILDM
Sbjct: 367 HELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINRFGFTEVQANAILDM 426
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER K +E + L+++I LEELL+ IL +I +E+++L+++F R +++
Sbjct: 427 QLRRLAALERHKIENEYRDLLKEIAGLEELLADPAKILAVIREELVQLRDKFGDERRTLI 486
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+D SG++ D D+IP+ +L+ I+ +GYVKR+ T+ Q+RG G + LR D +
Sbjct: 487 QDV-SGEITDEDLIPDVSVLVMITNRGYVKRIADGTYRQQHRGGRGVTGMTLREEDGVHR 545
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
+ R HD +L+F+DRG V+ + +++P+ R A G P++ ++ + GE IT+++PV +F
Sbjct: 546 IVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTARGIPVINLIGIEPGETITALLPVRDF 605
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
A ++L M T NG +K+ L+ F+S+R++G+IAI L GDEL WVR + +D + + ++
Sbjct: 606 ASARYLFMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAWVRLTSGNDELILVTEQ 665
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G I +R + R G + +R++ GD++ + +++ P+
Sbjct: 666 GQAIRFKETDVRPMGRPAAGVIGIRMEPGDRVIAAEVV----------QPDQD------- 708
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGES 864
LL VS +G+GKR LS FR G+ K + + +AA VV
Sbjct: 709 ----LLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAARVV--------TD 756
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ ++LVS G V R+ IS R +GV +MRL+ ++ S ++I E
Sbjct: 757 TDSIMLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPE 808
>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
gi|384157619|ref|YP_005539692.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
gi|384162411|ref|YP_005543790.1| DNA gyrase subunit A [Bacillus amyloliquefaciens LL3]
gi|384166631|ref|YP_005548009.1| DNA gyrase subunit A [Bacillus amyloliquefaciens XH7]
gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
gi|341825910|gb|AEK87161.1| DNA gyrase subunit A [Bacillus amyloliquefaciens XH7]
Length = 819
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 553/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D S++EP+++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NPE T+QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F + +L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEELYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I + +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V +
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVKATR 757
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E E +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 758 GE-----EDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806
>gi|375360697|ref|YP_005128736.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|421729500|ref|ZP_16168630.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451348604|ref|YP_007447235.1| DNA gyrase subunit A [Bacillus amyloliquefaciens IT-45]
gi|452854069|ref|YP_007495752.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|371566691|emb|CCF03541.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|407076470|gb|EKE49453.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449852362|gb|AGF29354.1| DNA gyrase subunit A [Bacillus amyloliquefaciens IT-45]
gi|452078329|emb|CCP20079.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 819
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 554/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D S++EP+++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE+++ + A+ NPE T QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F +Q+L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I + +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 755 ATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806
>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
gi|402774250|ref|YP_006628194.1| DNA gyrase subunit A [Bacillus subtilis QB928]
gi|428277420|ref|YP_005559155.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
gi|430756788|ref|YP_007211251.1| DNA gyrase protein GyrA (subunit A) [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449092721|ref|YP_007425212.1| DNA gyrase subunit A [Bacillus subtilis XF-1]
gi|452913776|ref|ZP_21962404.1| DNA gyrase, A subunit [Bacillus subtilis MB73/2]
gi|121881|sp|P05653.1|GYRA_BACSU RecName: Full=DNA gyrase subunit A
gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
gi|402479436|gb|AFQ55945.1| DNA gyrase (subunit A) [Bacillus subtilis QB928]
gi|407955698|dbj|BAM48938.1| DNA gyrase subunit A [Bacillus subtilis BEST7613]
gi|407962969|dbj|BAM56208.1| DNA gyrase subunit A [Bacillus subtilis BEST7003]
gi|430021308|gb|AGA21914.1| DNA gyrase protein GyrA (subunit A) [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449026636|gb|AGE61875.1| DNA gyrase subunit A [Bacillus subtilis XF-1]
gi|452118804|gb|EME09198.1| DNA gyrase, A subunit [Bacillus subtilis MB73/2]
Length = 821
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/835 (43%), Positives = 554/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L AV
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806
>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
Length = 841
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/825 (44%), Positives = 544/825 (65%), Gaps = 37/825 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN ++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ S K
Sbjct: 5 PN--SQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
PFKK AR+VGEV+GK+HPHGD+AVYD++VRMAQDF+ RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D ++KEP ++PAR P LL+NG SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + A+ P+ T+QEL+E +PGPDFPT GLI+G GI AY TGRG I
Sbjct: 182 NIPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
T+R K E+E S K + +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+
Sbjct: 242 TLRAKVEIEQ-KSNGKEV-IIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRN 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE+++ A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L +F LSEK
Sbjct: 360 VVIRRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFNLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K DE +L+ I +L+ +L+ + +L++I +E+ E+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEVKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + Q++D D+IP + ++L ++ KGY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQKRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + I HD +L+F+++G VY A+ Y+IPE +R A G P++ +L + E
Sbjct: 538 GTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGVDKDEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+ +IIPV EFA D FL T G K+ L+ F++IR G+IA+ L DEL VR
Sbjct: 598 VNAIIPVEEFADDWFLFFTTKQGISKRSPLSSFANIRNNGLIALNLREDDELISVRLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + + +GM+I + +RS+ R G + L GD++ M+++
Sbjct: 658 SKEIIIGTSHGMLIRFPEEDVRSMGRTATGVKGISLSAGDEVVGMEVL-----------E 706
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+DS +L V+++G+GKR P +R G+ + D+ ++ +
Sbjct: 707 DDSQ----------ILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNIT--DKNGSLVSMK 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
A GE D V+L++ G + R+ V DIS R +GV L+R+
Sbjct: 755 ---AVTGEED--VMLITTGGVLIRMAVNDISTMGRNTQGVRLIRI 794
>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
Length = 809
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/835 (44%), Positives = 548/835 (65%), Gaps = 34/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VPV + +EM SYI Y+MSV++GRALPDVRDGLKP+HRRIL+AM EL L+ +P +K
Sbjct: 7 KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VG+V+GK+HPHGD A+YD++VR+AQDFS+RYPLI GHGNFGSID DP AAMRYTE R
Sbjct: 67 ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML +DID+DTV+F+PNFD++ KEP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LSRIALEML-SDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I NP+ T QEL+ + GPDFPTGG+I+G GI + Y TGRG I VR K
Sbjct: 186 NLSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ +R +++ EIPY NK+ L+EKIAELV +K LDGISD+RDESDR+G+RIV
Sbjct: 246 ATIEPMEGGKQR--IVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +++N LY+ T +Q +F M+ +++ +P+ + L+E++ +L + VV R
Sbjct: 304 IELKRDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ +ER HI+EG+ + L++LD VI ++R++ TA L F L+EKQA I
Sbjct: 364 RTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K DE + L+E+I + +L K + +I++E++++K RF R
Sbjct: 424 LDMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ D+ D+IP +++++ ++ GYVKRM +++ Q RG G + R D
Sbjct: 484 TRIV-AEVKDFDEQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGITTREEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ +V H VL+F+++G VY +A++IPE R A GT +V +L L E++ ++IP+
Sbjct: 543 VERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLKPQEKVNAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F +LVM+T G +KK L+ + S R TGIIAI L GDEL V+ D + +
Sbjct: 603 KDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVGKKDELILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ +GM I S + + R RG A+ L +GD++ASMD+
Sbjct: 663 TSHGMSIRFSVEDVTPTGRTARGVKAITLGEGDEVASMDVT------------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAED 861
S G +L ++E G GKR PL +R G+I + + RL + VV
Sbjct: 704 --SVGSDVLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVGLRVV------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
E D+ ++L + SG + R++V IS +R RGV LM+LE ++ + ++I +E
Sbjct: 755 AEGDD-IILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESE 808
>gi|423484483|ref|ZP_17461172.1| DNA gyrase subunit A [Bacillus cereus BAG6X1-2]
gi|401137944|gb|EJQ45519.1| DNA gyrase subunit A [Bacillus cereus BAG6X1-2]
Length = 824
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/824 (44%), Positives = 548/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELAEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D V+L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--VMLITVAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
gi|384173668|ref|YP_005555053.1| DNA gyrase, A subunit [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
gi|349592892|gb|AEP89079.1| DNA gyrase, A subunit [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 821
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/835 (43%), Positives = 554/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALGLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L AV
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806
>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
Length = 822
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/824 (44%), Positives = 548/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM I +L+ +L+ + +L++I +E+IE+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|423513055|ref|ZP_17489585.1| DNA gyrase subunit A [Bacillus cereus HuA2-1]
gi|402446098|gb|EJV77961.1| DNA gyrase subunit A [Bacillus cereus HuA2-1]
Length = 823
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
gi|423490642|ref|ZP_17467324.1| DNA gyrase subunit A [Bacillus cereus BtB2-4]
gi|423496366|ref|ZP_17473010.1| DNA gyrase subunit A [Bacillus cereus CER057]
gi|423496840|ref|ZP_17473457.1| DNA gyrase subunit A [Bacillus cereus CER074]
gi|423595332|ref|ZP_17571362.1| DNA gyrase subunit A [Bacillus cereus VD048]
gi|423597249|ref|ZP_17573249.1| DNA gyrase subunit A [Bacillus cereus VD078]
gi|423659654|ref|ZP_17634823.1| DNA gyrase subunit A [Bacillus cereus VDM022]
gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
gi|401149548|gb|EJQ57019.1| DNA gyrase subunit A [Bacillus cereus CER057]
gi|401163260|gb|EJQ70607.1| DNA gyrase subunit A [Bacillus cereus CER074]
gi|401222008|gb|EJR28610.1| DNA gyrase subunit A [Bacillus cereus VD048]
gi|401238781|gb|EJR45213.1| DNA gyrase subunit A [Bacillus cereus VD078]
gi|401304282|gb|EJS09839.1| DNA gyrase subunit A [Bacillus cereus VDM022]
gi|402428987|gb|EJV61078.1| DNA gyrase subunit A [Bacillus cereus BtB2-4]
Length = 823
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
Length = 829
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/836 (44%), Positives = 550/836 (65%), Gaps = 33/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EM YI Y+MSV++ RALPDVRDGLKPVHRRIL++MHELGL+ K ++KC
Sbjct: 6 KVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VY +LVR+AQDF+LRY ++ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI ++TV+F+PNFD +KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MNKIALEMV-RDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI NPEAT+ EL+ + GPDFPT G+IMG GI AY TGRG+ITVR K
Sbjct: 185 NLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E+ D+ ++ +II EIPYQ NK+ LVE IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 245 SEIEVEDNGKQK--IIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ A+ +I++N LY+ T LQ +F NM+ ++D +P+ + LK++LQ ++ F+ V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + R HI+EG+ + LD++D VI ++R + + A L D+F LSEKQA AI
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K DE LM+ I +L+ +L+ IL +I E+ E+K ++ R
Sbjct: 423 LDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKYGDERK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E A++ +D D+I + +++ ++ GY+KR+ +T+ Q RG G + +D
Sbjct: 483 TAIERAEN-DIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + + H+++L+F+++G +Y +AY+IPE R A GT +V +L L E+I ++I +
Sbjct: 542 VENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVISI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + FLVM T G IKK + ++ +IR +G+IAI L DEL VR DD + +
Sbjct: 602 KEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIIIV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G+ I + +R L RN G + LK+ D + M++ + S+V
Sbjct: 662 TNKGLAIRFNEVDVRPLGRNALGVKGITLKEDDFVVGMEV-------------PNQESDV 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
L VSE+G GKR + ++ GLI YK S D+ +VG + EDG
Sbjct: 709 --------LVVSENGFGKRTHVGEYKCQHRGGKGLITYKVS--DKTGK--LVGVRMVEDG 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
++++L++ ++ RI V DIS +R A GV LMR K+ + + I+ + E
Sbjct: 757 ---DELMLINNLHSI-RINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSE 808
>gi|384263638|ref|YP_005419345.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387896531|ref|YP_006326827.1| DNA gyrase subunit A [Bacillus amyloliquefaciens Y2]
gi|380496991|emb|CCG48029.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387170641|gb|AFJ60102.1| DNA gyrase subunit A [Bacillus amyloliquefaciens Y2]
Length = 819
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 554/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D S++EP+++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE+++ + A+ NPE T QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F +Q+L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I + +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 755 ATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806
>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
Length = 812
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/838 (42%), Positives = 550/838 (65%), Gaps = 32/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VP++L EEM S++ YSMSV++ RALPDVRDGLKPVHRRIL+ ++E G + KP+ K
Sbjct: 7 KVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VG+V+G++HPHGD+A+YD+ VR+AQDFS RY LI GHGNFGSID DPAAAMRYTE R
Sbjct: 67 AGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ + +LADID++TV+F PN+D+ ++EP++LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 127 MAKIT-SYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I NP+AT+++L+ + GPDFPTG LIMG GI AY TGRG I +R K
Sbjct: 186 NLAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ +M +++ EIPYQ NKS L+E+IAELV +K +DGI+D+RDESDR GM+IV
Sbjct: 246 ARIEKMNGN--KMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P IV+N L++ T +Q +F M+ ++DG PK + L+++L +L+ + V+ R
Sbjct: 304 IELRRDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + + R HI+EG+ + +DN+DR+I I+R + A L EF LSEKQA AI
Sbjct: 364 RTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILMGEFNLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RL LER+K +E + L+ I +L S K +L +I++E+ E+K +F+ PR
Sbjct: 424 LDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEKMVLDIIKKEISEIKEKFADPRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I ++ ++ I+ GY+KR+ NT+ Q RG G + + +D
Sbjct: 484 TEIT-SSGADIDVEDLIAEEDAVITITHNGYIKRLPVNTYKAQRRGGRGVTGMGTKEDDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H +L+F+DRG VY + ++IPE +R A GT +V +L+++ E++ ++IPV
Sbjct: 543 VEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKGTAIVNLLAITGDEKVNAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EFA DQ+L T +G +KK SL + ++R G+IA+ L GDEL V+ + +A
Sbjct: 603 KEFAADQYLFTATRSGIVKKTSLQHYDTVRKEGLIALTLDEGDELIGVKLTDGKSDILLA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NGM + + +R + R RG + L GD + ++D A+ D E
Sbjct: 663 TRNGMAVRFNETNVREMGRTARGVKGIELTQGDFVVALD----AVKDDDE---------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL ++E G GKR PLS +RK G++ + + + L A G + G
Sbjct: 709 -------LLMITELGMGKRTPLSEYRKQNRGGKGILAMRLTNKTGLMA----GIKVVRPG 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++++++S G + R+ V +I++ +R +GV +MR+ + K+ + + +++ E + +
Sbjct: 758 ---DELMVISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARVAMREEDEE 812
>gi|386756587|ref|YP_006229803.1| protein GyrA [Bacillus sp. JS]
gi|384929869|gb|AFI26547.1| GyrA [Bacillus sp. JS]
Length = 821
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/835 (43%), Positives = 554/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L AV
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDISDISITGRVTQGVRLIRMAEEEHVATVALV 806
>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
gi|423520151|ref|ZP_17496632.1| DNA gyrase subunit A [Bacillus cereus HuA2-4]
gi|423671042|ref|ZP_17646071.1| DNA gyrase subunit A [Bacillus cereus VDM034]
gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
gi|401156744|gb|EJQ64147.1| DNA gyrase subunit A [Bacillus cereus HuA2-4]
gi|401294536|gb|EJS00164.1| DNA gyrase subunit A [Bacillus cereus VDM034]
Length = 823
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
Length = 812
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/837 (44%), Positives = 546/837 (65%), Gaps = 35/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV++ EEM SYI Y+MSV++GRALPDVRDGLKPVHRR+L+ M+ELG + KP+KK A
Sbjct: 7 VLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYKKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD A+YD++VRM QDFSLRYPLI G GNFGS+D D AAAMRYTE R+
Sbjct: 67 RVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRM 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML D+D++TVNFVPNFDES KEPS+LPA+LP LL+NG+SGIAVGMATNIPPHN
Sbjct: 127 AKIADEML-DDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D ALI++P ELL+ + GPDFPTG I G GI DAY TGRG I +R K
Sbjct: 186 ISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRAKA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+ + R +++ EIPY NK+ L+E IA+LV +K L+GISD+RDESDR GMRIVI
Sbjct: 246 EIT---EEGGRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+GA+ ++++N LYR T ++++F N + ++D QP+ + LKE L+ +L R VV RR
Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++F+L + + R HI+ G++V LDN+D + I+R + S A A ++ LSE+Q+ AIL
Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSKAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LR LT LER+K DE L++ I L+E+L+S + +L +I+ E++EL+ ++ R +
Sbjct: 423 DMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGDGRRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+++++D G++ D D+IP + +++ IS GY+KR +T+ Q RG +G + + D +
Sbjct: 483 IIKESD-GEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIMGMETKEEDFV 541
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
D HDH+L+F+++G VY + Y+IPE +R + G +V +L+L E + ++IP+
Sbjct: 542 VDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPNESVNAMIPIK 601
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF +L+M T G IKK +L+ F +IR TGIIAI L GDEL V+ V +A+
Sbjct: 602 EFDEKHYLIMCTREGTIKKTALSSFQNIRRTGIIAIGLDEGDELISVKLTNGGQEVLIAT 661
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+NG S +R + R G + +RL + DK+ M+++
Sbjct: 662 RNGKANRFSESEVRPMGRQAGGVIGIRLTEKDKVIGMEVV-------------------- 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S +L V E+G GKR +S + G+I K + L VV + D
Sbjct: 702 -SESASILTVCENGFGKRTAISEYTPHHRGGQGMINIKTT----LRNGGVVAIASVTD-- 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGV--ILMRLELSGKIQSASLISVTEPE 918
D+Q+++V++ G + RI V+DIS +R +GV I ++ E + A L+S + E
Sbjct: 755 -DDQLLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSEKKEE 810
>gi|423369456|ref|ZP_17346887.1| DNA gyrase subunit A [Bacillus cereus VD142]
gi|401077893|gb|EJP86220.1| DNA gyrase subunit A [Bacillus cereus VD142]
Length = 823
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|384184094|ref|YP_005569990.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
CT-43]
gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 816
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/841 (43%), Positives = 554/841 (65%), Gaps = 41/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
GE D ++L++ +G + R+ V IS R +GV L+RLE ++ + + E
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDEE 812
Query: 918 E 918
E
Sbjct: 813 E 813
>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
Length = 849
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/830 (44%), Positives = 542/830 (65%), Gaps = 33/830 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ V++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M LGLS K ++KC
Sbjct: 7 KIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD +VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD ++EP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIAVEML-RDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPE+++ EL+ + GPDFPTG IMG+ GI AY TGRG+I +R K
Sbjct: 186 NLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIVIRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+ +E ++ R +I EIPYQ NK+ L+E IAELV++K + GISD+RDESDR GMRIV
Sbjct: 246 SNIE---EENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A+P+I++N LY+ T LQ SF M+ +++ + K + LKEVL ++DF+ V+ R
Sbjct: 303 IELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L++ + R HI+EG+ + LDN+DRVI I+R + ++ A L DEF LSEKQ+ AI
Sbjct: 363 RTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFALSEKQSQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K DE L++Q+ L +L+S + +L++I+ E++E+K ++ R
Sbjct: 423 LEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLEVIKNELLEIKAKYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E D +++ D+I +++++ +++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TSIE-QDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQAMSTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ ++ H VL+F++RG VY RAY+IP+ R A GT ++ ++++ E+I +++ V
Sbjct: 542 VDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEPDEKIQTVLTV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
++ D +L M T G +KK LN F ++R G+IAI L DEL V+ D V
Sbjct: 602 TDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG + + +R + R G A+ LK D MDI
Sbjct: 662 TQNGYALRFNEKDVRHMGRTASGVKAITLKGDDIAVCMDI-------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL +SE+G GKR P++ ++ VGLI YK S + +VG ++
Sbjct: 702 -AVDEEELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISEK----TGKLVGATIC--- 753
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ D++++L++ +G RI V DIS +R A GV LMR KI + + I
Sbjct: 754 KLDDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKI 803
>gi|423394307|ref|ZP_17371508.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-1]
gi|423410272|ref|ZP_17387419.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-3]
gi|401648269|gb|EJS65865.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-3]
gi|401658678|gb|EJS76168.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-1]
Length = 823
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 549/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K+RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKDRFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
Score = 48.5 bits (114), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 578 IIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
IIP +D+ L +++G KR ++F N++ G I S LR D + +
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAIS---LREEDEVISVRLTSG 658
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
++ + G++ + RNAAG V+ ++L + +++ + V E D +
Sbjct: 659 DKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGEEDQVVGMEIVEE---DTNV 712
Query: 692 VMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMV 748
+++T NGY K+ + + S G+ + + +L V+ T ++ + + + G++
Sbjct: 713 LIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVI 772
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
I D I + RNT+G +RL+D ++A++
Sbjct: 773 IRMPVDQISQMGRNTQGVRLIRLEDEQEVATV 804
>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
Length = 823
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 546/834 (65%), Gaps = 33/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL+ K ++KC
Sbjct: 6 KILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVYD+LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+FVPNFD ++EPS++PAR P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MNKITLEML-RDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + LI NPE T+ EL+ + GPDFPT G+I+G LGI DAY TGRG++ VR K
Sbjct: 185 NLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T++E + R +I+ EIPYQ NK+ L+E IA+LV++K ++GISDIRDESDR GMRIV
Sbjct: 245 TDIE---EEKGRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++++N LY+ T +Q +F M+ +++ +P+ + LK++L +L+F+ V+ R
Sbjct: 302 IELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + R HI+EG+ + LD++D VI ++R + + A L + F LSEKQA AI
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K L I L+++L+ + +L++I++E+ E+KN++ R
Sbjct: 422 LDMRLQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGDDRR 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ ++ D+ ++ D+I E+++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIQKNDN-EISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGIQAMTTKEDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H+++L+F++RG VY + Y++P+ R A G L+ +L + E+I ++I
Sbjct: 541 VEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIETNEKIQAVITF 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + +M T G IKK ++ +SSIR G+ AI L DEL VR T + + +
Sbjct: 601 KEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRMTTGESEILVF 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NG I + +R + R G A+ L+ D +MDI+
Sbjct: 661 TKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIAVAMDIV------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L +SE+G GKR P+S + G+I YK + ++ A +VG + +D
Sbjct: 702 --CEGQDVLVISENGFGKRTPVSEYTPHRRGGKGMITYKIT--EKTGA--IVGARVVKD- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++++LV+ S R+ V IS +R A GV LMR + K+ + + I+ E
Sbjct: 755 --EDEMMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDE 806
>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
Length = 824
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 10 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 70 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 130 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 189 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 249 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 307 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 367 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 427 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 487 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 543
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 544 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 602
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 603 IIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 662
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 663 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 712
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 713 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 759 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 797
>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
Length = 822
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 548/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
gi|407707962|ref|YP_006831547.1| DoxX protein [Bacillus thuringiensis MC28]
gi|423376714|ref|ZP_17353998.1| DNA gyrase subunit A [Bacillus cereus BAG1O-2]
gi|423439809|ref|ZP_17416715.1| DNA gyrase subunit A [Bacillus cereus BAG4X2-1]
gi|423450030|ref|ZP_17426909.1| DNA gyrase subunit A [Bacillus cereus BAG5O-1]
gi|423532237|ref|ZP_17508655.1| DNA gyrase subunit A [Bacillus cereus HuB2-9]
gi|423542493|ref|ZP_17518883.1| DNA gyrase subunit A [Bacillus cereus HuB4-10]
gi|423548724|ref|ZP_17525082.1| DNA gyrase subunit A [Bacillus cereus HuB5-5]
gi|423618806|ref|ZP_17594639.1| DNA gyrase subunit A [Bacillus cereus VD115]
gi|423621469|ref|ZP_17597247.1| DNA gyrase subunit A [Bacillus cereus VD148]
gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
gi|401127328|gb|EJQ35055.1| DNA gyrase subunit A [Bacillus cereus BAG5O-1]
gi|401168740|gb|EJQ75999.1| DNA gyrase subunit A [Bacillus cereus HuB4-10]
gi|401174841|gb|EJQ82048.1| DNA gyrase subunit A [Bacillus cereus HuB5-5]
gi|401252282|gb|EJR58543.1| DNA gyrase subunit A [Bacillus cereus VD115]
gi|401263224|gb|EJR69353.1| DNA gyrase subunit A [Bacillus cereus VD148]
gi|401640959|gb|EJS58684.1| DNA gyrase subunit A [Bacillus cereus BAG1O-2]
gi|402421441|gb|EJV53694.1| DNA gyrase subunit A [Bacillus cereus BAG4X2-1]
gi|402465098|gb|EJV96782.1| DNA gyrase subunit A [Bacillus cereus HuB2-9]
gi|407385647|gb|AFU16148.1| DNA gyrase subunit A [Bacillus thuringiensis MC28]
Length = 823
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 548/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [Methanocella
arvoryzae MRE50]
gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [Methanocella
arvoryzae MRE50]
Length = 826
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/818 (45%), Positives = 540/818 (66%), Gaps = 34/818 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV++ EEM SYI Y+MSV++GRALPDVRDGLKPVHRR L+ M+ELG + KP+KK A
Sbjct: 21 LLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSA 80
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD A+YD++VRMAQDFSLRY L+ G GNFGSID D AAAMRYTE RL
Sbjct: 81 RVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEVRL 140
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E +LAD+D++TV+F PNFDE+ KEP +LPARLP LL+NG+SGIAVGMATNIPPHN
Sbjct: 141 ERIAEE-ILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHN 199
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD A+I NPE ELL Y+ GPDFPT G I G GI +AY TGRG I +R K
Sbjct: 200 LGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAKA 259
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+ +D K M +I+ EIPY NK+ L+E IA+LV++K ++GISD+RDESDR GMRIVI
Sbjct: 260 EI--VDENGK-MSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A+ ++++N L++ T ++S+F N + ++D P + LKE + F+ R VV RR
Sbjct: 317 ELKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRR 376
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++F+L + + R HI+ G+++ L N+D +RI+R + + A A L +++ LS++Q+ AIL
Sbjct: 377 SQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSRAIL 436
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT LER+K DE L+++I L E+L+S + +L +I+ E++++K ++ R +
Sbjct: 437 DMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDERRT 496
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ ++ +G++ D D+IP + +++ IS GY+KRM +T+ Q RG +G + + D +
Sbjct: 497 KIVES-AGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGMETKEEDFV 555
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPV 682
D V HD++L+FS++G VYS + Y+IP +R A G ++ ++++ GE I ++IP+
Sbjct: 556 VDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGEAINAMIPI 615
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F FLVM T G IKK +L+ F +IR+TGIIAI L GDEL V+ V +A
Sbjct: 616 KTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELISVKMTNGSQEVLIA 675
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NG S +R++ R G + +RL + DK+ +M+I+
Sbjct: 676 TRNGKCNRFSESEVRTMGRPAMGVIGIRLTENDKVIAMEIV------------------- 716
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L + E+G GKR P+ + G+I K + R AV V +
Sbjct: 717 --SPGQSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTL--RNGAVVAVISVM---- 768
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D+Q+V+ S+ G + R+ V DI R +GV +M++
Sbjct: 769 -PDDQIVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKM 805
>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
gi|410672383|ref|YP_006924754.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
gi|423386976|ref|ZP_17364231.1| DNA gyrase subunit A [Bacillus cereus BAG1X1-2]
gi|423526692|ref|ZP_17503137.1| DNA gyrase subunit A [Bacillus cereus HuB1-1]
gi|452196387|ref|YP_007476468.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|401630828|gb|EJS48626.1| DNA gyrase subunit A [Bacillus cereus BAG1X1-2]
gi|402454564|gb|EJV86354.1| DNA gyrase subunit A [Bacillus cereus HuB1-1]
gi|409171512|gb|AFV15817.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
gi|452101780|gb|AGF98719.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 823
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 548/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
gi|365162546|ref|ZP_09358674.1| DNA gyrase subunit A [Bacillus sp. 7_6_55CFAA_CT2]
gi|423410763|ref|ZP_17387883.1| DNA gyrase subunit A [Bacillus cereus BAG3O-2]
gi|423427580|ref|ZP_17404611.1| DNA gyrase subunit A [Bacillus cereus BAG3X2-2]
gi|423433452|ref|ZP_17410456.1| DNA gyrase subunit A [Bacillus cereus BAG4O-1]
gi|423438892|ref|ZP_17415873.1| DNA gyrase subunit A [Bacillus cereus BAG4X12-1]
gi|423506617|ref|ZP_17483206.1| DNA gyrase subunit A [Bacillus cereus HD73]
gi|423583664|ref|ZP_17559775.1| DNA gyrase subunit A [Bacillus cereus VD014]
gi|423632809|ref|ZP_17608554.1| DNA gyrase subunit A [Bacillus cereus VD154]
gi|423633658|ref|ZP_17609311.1| DNA gyrase subunit A [Bacillus cereus VD156]
gi|423644651|ref|ZP_17620268.1| DNA gyrase subunit A [Bacillus cereus VD166]
gi|423651332|ref|ZP_17626902.1| DNA gyrase subunit A [Bacillus cereus VD169]
gi|423658406|ref|ZP_17633705.1| DNA gyrase subunit A [Bacillus cereus VD200]
gi|449086676|ref|YP_007419117.1| DNA gyrase, A subunit [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
gi|363618079|gb|EHL69435.1| DNA gyrase subunit A [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108919|gb|EJQ16849.1| DNA gyrase subunit A [Bacillus cereus BAG3X2-2]
gi|401109495|gb|EJQ17418.1| DNA gyrase subunit A [Bacillus cereus BAG3O-2]
gi|401111870|gb|EJQ19752.1| DNA gyrase subunit A [Bacillus cereus BAG4O-1]
gi|401116019|gb|EJQ23865.1| DNA gyrase subunit A [Bacillus cereus BAG4X12-1]
gi|401209724|gb|EJR16483.1| DNA gyrase subunit A [Bacillus cereus VD014]
gi|401259455|gb|EJR65631.1| DNA gyrase subunit A [Bacillus cereus VD154]
gi|401270283|gb|EJR76306.1| DNA gyrase subunit A [Bacillus cereus VD166]
gi|401279384|gb|EJR85313.1| DNA gyrase subunit A [Bacillus cereus VD169]
gi|401282725|gb|EJR88623.1| DNA gyrase subunit A [Bacillus cereus VD156]
gi|401288136|gb|EJR93898.1| DNA gyrase subunit A [Bacillus cereus VD200]
gi|402447282|gb|EJV79138.1| DNA gyrase subunit A [Bacillus cereus HD73]
gi|449020433|gb|AGE75596.1| DNA gyrase, A subunit [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 823
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|407980740|ref|ZP_11161516.1| DNA gyrase subunit A [Bacillus sp. HYC-10]
gi|407412506|gb|EKF34301.1| DNA gyrase subunit A [Bacillus sp. HYC-10]
Length = 838
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/841 (43%), Positives = 550/841 (65%), Gaps = 35/841 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P + V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KPFK
Sbjct: 6 TPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ R L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRNMLVEGHGNFGSVDGDGAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL +S +L DI +DT+++ N+D S++EP ++PAR P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARLSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPARFPNLLVNGATGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NPE T QEL+E +PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDGVLAVSQNPEITTQELMEIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K+++E S +R ++I EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKSDIEETSSGKQR--IVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A+ +++N+LY+ T LQ+SF N++ ++DGQPK + LK+ L+ +L+ + ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L + + LSEKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYTLSEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE K L+E I +L+ +L+ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEDEYKGLVELIAELKAILADNEKVLEIIREELTEIKERFNDT 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+IP + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF D +L T +G K+ SL+ F++IR G+IA+ L DEL VR +
Sbjct: 601 IIPVSEFDEDSYLFFTTRHGVSKRTSLSQFANIRNNGLIALSLREEDELMAVRLTNGEKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++ GM+I +R + R G + L + D + M+I+ +
Sbjct: 661 IIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVVGMEIL-------------EP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+NV L V+E G+GK P +R GL K + + L AV
Sbjct: 708 DANV--------LIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
A + E++E +++++ SG + R+ V DIS R +GV L+RL + + +L+ ++
Sbjct: 754 KATNAETEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDDEHVATVALVEQSQE 813
Query: 918 E 918
+
Sbjct: 814 D 814
>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
Length = 823
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 549/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K+RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKDRFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 578 IIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
IIP +D+ L +++G KR ++F N++ G I S LR D + +
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAIS---LREEDEVISVRLTSG 658
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
++ + G++ + RNAAG V+ ++L + +++ + V E D +
Sbjct: 659 DKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGEEDQVVGMEIVEE---DTNV 712
Query: 692 VMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMV 748
+++T NGY K+ + + S G+ + + +L V+ T ++ + + + G++
Sbjct: 713 LIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVI 772
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
I D I + RNT+G +RL+D ++A++
Sbjct: 773 IRMPVDQISQMGRNTQGVRLIRLEDEQEVATV 804
>gi|218895147|ref|YP_002443558.1| DNA gyrase subunit A [Bacillus cereus G9842]
gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402562897|ref|YP_006605621.1| DNA gyrase subunit A [Bacillus thuringiensis HD-771]
gi|423362663|ref|ZP_17340163.1| DNA gyrase subunit A [Bacillus cereus VD022]
gi|423565615|ref|ZP_17541890.1| DNA gyrase subunit A [Bacillus cereus MSX-A1]
gi|434378654|ref|YP_006613298.1| DNA gyrase subunit A [Bacillus thuringiensis HD-789]
gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
gi|401076937|gb|EJP85282.1| DNA gyrase subunit A [Bacillus cereus VD022]
gi|401193297|gb|EJR00303.1| DNA gyrase subunit A [Bacillus cereus MSX-A1]
gi|401791549|gb|AFQ17588.1| DNA gyrase subunit A [Bacillus thuringiensis HD-771]
gi|401877211|gb|AFQ29378.1| DNA gyrase subunit A [Bacillus thuringiensis HD-789]
Length = 823
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 547/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|394994155|ref|ZP_10386884.1| DNA gyrase subunit A [Bacillus sp. 916]
gi|393805004|gb|EJD66394.1| DNA gyrase subunit A [Bacillus sp. 916]
Length = 819
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/834 (43%), Positives = 553/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D +++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE+++ + A+ NPE T QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F +Q+L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I + +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 755 ATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806
>gi|417003071|ref|ZP_11942157.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
Length = 814
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/836 (44%), Positives = 553/836 (66%), Gaps = 33/836 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+L E+M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 7 IINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+A+YD+LVR+AQDFS RYPL +G GNFGSID D AAAMRYTE ++
Sbjct: 67 RVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTEVKM 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI++DTV+F+PNFDE + EP++LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 127 SKIAKEML-RDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMAPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D A + NPE +++EL + +PGPDFPTG I+G GI DAY+TGRG++ +R
Sbjct: 186 LGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLRAVA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E K R +I+ EIPYQ NKS L+EKIA+LV++K +DGISDIRDESDR GMRIVI
Sbjct: 246 KIEPF--KKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIVI 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR ++ +IV+N+LY+ T L+++F + ++DG P+ + LKE+++ ++D + VV RR
Sbjct: 304 EIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F LS+ K R+HIVEG+++ +DN+D +IRI+R + N ++F L++KQ+ AIL
Sbjct: 364 TSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFNLTDKQSQAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE K E+K L E I L +L+S +N+++LI E+ E+K++FS R S
Sbjct: 424 DMQLKRLSGLEIDKLNAENKELEETISYLLSILNSEENLIKLIISEMEEIKDKFSDDRRS 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G++D ++I +++LL ++ GY+KR+ +T+ +QNRG G + G + D +
Sbjct: 484 KII-PDEGEIDIEELIEKEDVLLTLTNDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFI 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
H+ +L+F+ G VYS + Y++PE +R + GT ++ IL+L GERIT ++ +S
Sbjct: 543 KKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRGTAIINILNLESGERITEMMTLS 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E D +V+ T +G IKK F++IR GIIAI L GD+L VR ++ + +++
Sbjct: 603 ELNEDSQIVLQTKDGTIKKTEAENFTNIRKNGIIAISLKDGDKLISVRQIDKEEELIIST 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM I + +RS+ R +G A++L +GD++ SM N+K
Sbjct: 663 KKGMTIQFNSQDLRSMGRIAQGVRAIKLAEGDEVVSM--------------------NIK 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G +LL V+E+G GK+ ++F+ G+ +K + D+ V +L D +
Sbjct: 703 GDE-TYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVV---DTLPVDLD 756
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG-KIQSASLISVTEPE 918
+D +++VS SG + R+ VRDISI R GV L L G +I S + S E E
Sbjct: 757 ND--IMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTKYSALEEE 810
>gi|407472539|ref|YP_006786939.1| DNA gyrase subunit A [Clostridium acidurici 9a]
gi|407049047|gb|AFS77092.1| DNA gyrase subunit A [Clostridium acidurici 9a]
Length = 813
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/835 (43%), Positives = 548/835 (65%), Gaps = 34/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R+V +++ EEM SY+ YSMSV++ RALPDVRDGLKPVHRRIL+AM++LG++ KP K
Sbjct: 5 NKRVVDIDIREEMKKSYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTPDKPHK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD AVYD++VR+AQDFS RY LI GHGNFGS+D D AAAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDTAVYDAMVRLAQDFSTRYMLIDGHGNFGSVDGDGAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ ML DI +DT+++ NFDE+ EP +LP+R P LL+NG+SGIAVGMAT+IP
Sbjct: 125 ARMSKIALEML-RDIGKDTIDYRLNFDETLNEPKVLPSRFPNLLVNGSSGIAVGMATSIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + A+I N + T++E++ ++ GPDFPTG +IMG I +AYRTGRG++ VR
Sbjct: 184 PHNLSEVIDGIVAMIDNKDITIEEIISHIKGPDFPTGAIIMGKENIREAYRTGRGKVIVR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E+E ++ R +I+ EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR GMR
Sbjct: 244 SEAEIE--ENSKGRSSIIVTEIPYQVNKARLIEKIAELVRDKRIEGISDLRDESDRDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR A+ +IV+N+LY+ T LQ++FS M+ +++ QPK + L ++++ +LD + V+
Sbjct: 302 IVIEIKRDANANIVLNNLYKYTQLQATFSIIMLALVNDQPKVLNLHQMIKHYLDHQVEVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L++ +ER HI+ G+ + LDN+D VI+++R + + + A L ++F LS+KQA
Sbjct: 362 VRRTQYELNKAEERAHILAGLRIALDNIDAVIKLIRGSSTTAEAKDGLMNQFGLSDKQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E LM +I +L+E+L+S + + +I+QE++E+K +
Sbjct: 422 AILDMRLQRLTGLEREKIEEEYNALMIEISRLKEILASEELVYGIIKQELLEIKENYGDE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + ++ +D D+I + + + ++ GY+KR+ +T+ Q RG G + R
Sbjct: 482 RRTKIRVSEE-DIDIEDMIQEENVAITLTHFGYIKRLPEDTYKTQKRGGRGVAGLTTREE 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + HD++L+F+++G VY+ +AY+IPE R A G ++ +L L+ E+IT++I
Sbjct: 541 DFVEHLFITSTHDNLLFFTNQGKVYTMKAYEIPEAKRQARGMAIINLLQLNPEEKITAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ +F D +L+++T G KK+ LN +IR G+IAI L DEL VR DD V
Sbjct: 601 PIRDFVEDNYLILVTKKGITKKLRLNELQNIRKNGLIAISLKEEDELIGVRKTEGDDNVI 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + NGM I + +R + R G A+ L GD + MD++
Sbjct: 661 LVTSNGMSITFNEKDVRDMGRTAMGVKAITLNKGDYLVGMDLV----------------- 703
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
LL +SE G+GKR L +R + G G K ++ +D + G
Sbjct: 704 ----KPNKELLVISEFGYGKRTSLDEYR---IQSRGGKGIKTYNIKDITGKIISAGVV-- 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
E D+ +++VS GT+ R+ V DIS R +GV LM++ K+ S + + V
Sbjct: 755 ---EEDDDILIVSLGGTIIRLNVSDISQMGRSTQGVRLMKMAKDDKVVSVAKVLV 806
>gi|423471659|ref|ZP_17448403.1| DNA gyrase subunit A [Bacillus cereus BAG6O-2]
gi|423520669|ref|ZP_17497142.1| DNA gyrase subunit A [Bacillus cereus HuA4-10]
gi|401179766|gb|EJQ86929.1| DNA gyrase subunit A [Bacillus cereus HuA4-10]
gi|402431470|gb|EJV63538.1| DNA gyrase subunit A [Bacillus cereus BAG6O-2]
Length = 824
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/823 (43%), Positives = 548/823 (66%), Gaps = 41/823 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K+RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKDRFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ +G + R+ V IS R +GV L+RL
Sbjct: 758 ---TGEED--IMLITVAGVIIRMPVDQISQMGRNTQGVRLIRL 795
>gi|350264108|ref|YP_004875415.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349596995|gb|AEP84783.1| DNA gyrase, A subunit [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 821
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/835 (42%), Positives = 553/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 MIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDNDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L V
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVTV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806
>gi|452974105|gb|EME73927.1| DNA gyrase subunit A [Bacillus sonorensis L12]
Length = 824
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/844 (43%), Positives = 558/844 (66%), Gaps = 38/844 (4%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+KK
Sbjct: 7 PQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ RY L++GHGNFGS+D D AAAMRYTE
Sbjct: 67 SARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEA 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S +L DI++DT+++ N+D S++EP ++PAR P LL+NGA+GIAVGMATNIPP
Sbjct: 127 RMSKIS-MEILRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
H LGE+VD + A+ NP+ +L EL+E +PGPDFPT GLI+G GI AY TGRG IT+R
Sbjct: 186 HQLGEVVDGVLAVSKNPDISLAELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRA 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K ++E ++ S + +I+ EIPYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMRI
Sbjct: 246 KAQIE--ETSSGKPVIIVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL+R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 304 VIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIR 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR F+L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA A
Sbjct: 364 RRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFSLTEKQAQA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LER+K +E + L++ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLIQLIAELKAILADEEKVLEIIREELTEIKERFNDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + + ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK + + N
Sbjct: 484 RTEIVTSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQKRG--GKGIQGMGTNE 541
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +I
Sbjct: 542 DDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINAI 601
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IPV+EF + +L T +G K+ L+ F++IR G+IA+ L DEL VR + +
Sbjct: 602 IPVTEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELMSVRLTDGNKQI 661
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NG++I +R + R G + L D D + M+I+ EDS
Sbjct: 662 IIGTRNGLLIRFPESDVRQMGRTAAGVKGITLTDDDIVVGMEIL-----------EEDSD 710
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+E G+GKR P S +R GL K + E+ V V A
Sbjct: 711 ----------VLIVTEKGYGKRTPASEYRTQSRGGKGLKTCKIT-ENNGPLVTVK----A 755
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV---TE 916
GE D +++++ SG + R+ + DIS+ R +GV L+RL + + +L+ E
Sbjct: 756 TRGEED--LMIITASGVIIRMDINDISVTGRVTQGVRLIRLGDQEHVATVALVEKDEENE 813
Query: 917 PETD 920
ETD
Sbjct: 814 TETD 817
>gi|423613638|ref|ZP_17589498.1| DNA gyrase subunit A [Bacillus cereus VD107]
gi|401241703|gb|EJR48090.1| DNA gyrase subunit A [Bacillus cereus VD107]
Length = 823
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNPE T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPEITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIIIRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D V+L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--VMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|385267031|ref|ZP_10045118.1| DNA gyrase subunit A [Bacillus sp. 5B6]
gi|385151527|gb|EIF15464.1| DNA gyrase subunit A [Bacillus sp. 5B6]
Length = 819
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/834 (43%), Positives = 553/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D +++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE+++ + A+ NPE T QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKIVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F +Q+L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I + +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 755 ATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDHEHVATVALV 806
>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
Length = 855
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/837 (44%), Positives = 549/837 (65%), Gaps = 32/837 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +E+ +Y+ YSMSV++ RALPDVRDGLKPVHRRILF+M E+G+S + PFKK AR+V
Sbjct: 43 VYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARIV 102
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+VLGK+HPHGD++VY ++VRMAQDF++RY LI GHGNFGSID D AAAMRYTE R+ +
Sbjct: 103 GDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAKI 162
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LL DI +DT+++ NFDES EP +LPA+LP LLLNGA+GIAVGMATNIPPHNLGE
Sbjct: 163 TEE-LLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+VD + ALI NPE ++ EL+ Y+ GPDFPTGG+I G GI DAYRTGRG++ V G+ EVE
Sbjct: 222 VVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEVE 281
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
SK+ + +I+ E+PYQ NK+ L+EKIA+LV K + GISD+RDE+DR G+RIVIELK
Sbjct: 282 T--SKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELK 339
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+G + +++NSLY+ T LQ++F M+ ++D P+ + LK++LQ +L+ R V+ RR F
Sbjct: 340 KGEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRTEF 399
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + K R HI+EG + LDN++ VIRI+R + + A A L +F SE QA AILDM
Sbjct: 400 ELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAKFGFSEIQAKAILDMR 459
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER K E LM I +L +LS I +I++E ++LK F R + +
Sbjct: 460 LQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEGLKLKEDFGDERRTEIR 519
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
+A ++ D+I ++E+++ ++EKGYVKR+ +T+ Q RG IG + +D + D
Sbjct: 520 NA-RAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTVEDDVVKDM 578
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ +A D +L F+ +G V+S + Y+IPE + A G + I++L D E++++II V EF
Sbjct: 579 YIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLDDDEKVSTIIKVREFE 638
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC--TNDDLVAMASQ 744
++ L +T NG +KK L LF +I+ G AI+L DE+ ++ + +D + A++
Sbjct: 639 KNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIRLNEDDEVMFIGLTSGSGEDEIFAATK 698
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
NG+ I S +RS+ G + L+D DK+ II + ++KD R
Sbjct: 699 NGIAIRFSEKDVRSMGTGAAGVRGINLRDEDKIVGAAIISSEMNKDDAR----------- 747
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
+L ++E G+GKR L +R G+I K + + +V + +D
Sbjct: 748 -----ILTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNEK----TGKIVDVKIVKD--- 795
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT-EPETD 920
D++++L++ GT+ R V+D+S+ R A GV +M++ + KI AS++ +T EP+ D
Sbjct: 796 DDEIMLITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKI--ASIVKITEEPKLD 850
>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
Length = 856
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/842 (42%), Positives = 553/842 (65%), Gaps = 33/842 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + RI+ V+L EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+ M+++GL KP
Sbjct: 8 NKNSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLDPSKP 67
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+ KCA VG+VLG +HPHGD +VYD++VR+AQDFS+RY L+ GHGNFGS+D DP AA RY
Sbjct: 68 YHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPAAYRY 127
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S ML DI+++TV+F+ N+D+ KEP++LP+R P LL+NG+SGIAVGMAT
Sbjct: 128 TEARMSKISLEML-TDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGMATE 186
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE +D +C LI NP+A L E++E MPGPDFPTGG+IMG GI AY TGRG+IT
Sbjct: 187 IPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRGKIT 246
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR KTE+ +++K+ R +I+ E+PY+ NK+ L+E IA+LV++K ++GIS+I D SDR G
Sbjct: 247 VRAKTEI--IEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRKG 304
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
M I I++KR A P IV+N L+ T LQ++F M+ I+DG+PK + LKE+LQ +++F+
Sbjct: 305 MHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQAE 364
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI+EG+ + LD +D VI+I+R + ++A A L + F L + Q
Sbjct: 365 VIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMERFGLDDVQ 424
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+ M L +LT +E+ K DE L +I + E+L+S L+++++E+++++N+++
Sbjct: 425 AQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEIMQIRNKYA 484
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR + + A SG++D D+IP +E +L +++ GYVKR+ +T+ +Q RG G S R
Sbjct: 485 DPRRTEI-CAVSGEVDIEDLIPQEECVLTLTQFGYVKRLSADTYKIQRRGGRGVSGMSRR 543
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D ++ V +HD+VL+F+D+G VY + Y++PE +R + G + ++ +S E++TS
Sbjct: 544 EEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQSKGVNIANLIPISPDEKVTS 603
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V EF +++LVM+T G IK++ LN +++ R G+IA++L GDEL WVR +
Sbjct: 604 MIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNEGDELAWVRMTDGNSQ 663
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V +A++ GM I + IR++ R RG AM LK+GD + M ++
Sbjct: 664 VIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEGDCVVGMSVV--------------- 708
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
G +L VSE+G+G+ +R GL Y +AA+ VV
Sbjct: 709 ------REGGLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHTEKYGDVAAIKVVNL-- 760
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D+ ++++S+ G + RI I + AR ++GV +M++ ++ + + + + E
Sbjct: 761 ------DDDIIIISEEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARVPHIDGE 814
Query: 919 TD 920
D
Sbjct: 815 DD 816
>gi|335039157|ref|ZP_08532339.1| DNA gyrase, A subunit [Caldalkalibacillus thermarum TA2.A1]
gi|334180967|gb|EGL83550.1| DNA gyrase, A subunit [Caldalkalibacillus thermarum TA2.A1]
Length = 818
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/834 (43%), Positives = 545/834 (65%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRILFAM+ELG++ KP+KK
Sbjct: 5 RIKEVNIGQEMRNSFMDYAMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTPDKPYKKS 64
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD+LVRMAQDFS RYPLI GHGNFGSID D AAAMRYTE +
Sbjct: 65 ARIVGEVIGKYHPHGDMAVYDTLVRMAQDFSYRYPLIDGHGNFGSIDGDAAAAMRYTEAK 124
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI ++T+++ N+D +KEP +LP+R P LL+NGA+GIAVGMATN+PPH
Sbjct: 125 MARIA-TELLRDIHKETIDYQDNYDGQEKEPVVLPSRFPNLLVNGAAGIAVGMATNVPPH 183
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D L LI +PEAT+ +L+E++PGPDFPTG I+G GI AY TGRG IT+R K
Sbjct: 184 QLGEVIDALTHLIDHPEATVADLMEFIPGPDFPTGAQILGTSGIRRAYTTGRGTITLRAK 243
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E+ D+ +R +I+ E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDR+GMR+V
Sbjct: 244 TSIEVSDNGKQR--IIVDELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRNGMRVV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + ++V+N LY+ TALQ++F NM+ ++DG+PK + LK+VL+ +LD + V+ R
Sbjct: 302 IELRRDINANVVLNHLYKHTALQTTFGINMLALVDGEPKVLNLKQVLKYYLDHQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + + R HI+EG+ V LD+LD VI ++R + + A L +F L+E QA AI
Sbjct: 362 RTEYDLRKAEARAHILEGLRVALDHLDAVIDLIRSSRTTDEAKTGLMTQFNLTEDQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L+ +I +L+ +L+ + IL +I++E+ E+K +++ R
Sbjct: 422 LDMRLQRLTGLEREKIENEYRELLAKIAELKAILADERKILNVIKEELHEIKEKYNDERR 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A ++D D+IP ++++++++ KGY+KR+ +T+ Q RG G + + +D
Sbjct: 482 TEITVA-VDHIEDEDLIPQEKVIISLTHKGYIKRLPVSTYRSQKRGGRGITGLGTKEDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V HD +L F+++G VY +AY+IPE R A G P++ ++ + E IT++I V
Sbjct: 541 VEHLFVANTHDFILLFTNKGRVYRLKAYEIPELGRTARGLPIINLIQIEKDEYITALIQV 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ ++L T G +K+ +L+ F +R G+ AI L DEL VR + M
Sbjct: 601 EGYQPHRYLFFATRQGIVKRTALHDFEYVRRGGLFAINLRDNDELISVRLTDGQQEIIMG 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I S +R + R G + L+ D++ MD++ KD +
Sbjct: 661 TKKGMAIRFSEQEVRVMGRAAAGVKGITLRPDDEVIDMDVVK----KDHD---------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
++ VS +G+GKR + +R +GL Y + VVG
Sbjct: 707 -------VMIVSRNGYGKRTSIDEYRIQSRGGIGLKSYNVTE----PCFEVVGLKTV--- 752
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++ +LV+ SG + RI V ++S +RYARGV L+RL+ ++ + + + VTE
Sbjct: 753 AANDDFMLVTSSGLIIRIHVNEVSQLSRYARGVRLIRLQEDEEVATVAKVQVTE 806
>gi|390566547|ref|ZP_10246915.1| DNA gyrase (subunit A) [Nitrolancetus hollandicus Lb]
gi|390170198|emb|CCF86267.1| DNA gyrase (subunit A) [Nitrolancetus hollandicus Lb]
Length = 835
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/834 (44%), Positives = 543/834 (65%), Gaps = 34/834 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + EM SY+ Y+MSV++ RALPDVRDGLKPV RRIL+AMHE+G+ ++K A +V
Sbjct: 9 VNIDTEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGIRPTTKYRKSAGIV 68
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEVL +HPHGD+AVYD+LVRM Q FSLRYPL+ G GNFGS+D D AAAMRYTE RLEA+
Sbjct: 69 GEVLKSYHPHGDSAVYDALVRMVQPFSLRYPLVDGQGNFGSVDGDGAAAMRYTEARLEAI 128
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LL DI++ T++FVPN+D +EP +LPA+LP LL+NGASGIAVGMATNIPPHNL E
Sbjct: 129 AEE-LLQDIEKQTIDFVPNYDGEAREPVVLPAKLPNLLVNGASGIAVGMATNIPPHNLTE 187
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+ D L LI NPEAT+ EL+E +PGPDFPTGG+I+G GI AY TG+GR+ +R +T +E
Sbjct: 188 VCDGLIYLIDNPEATVDELIEIIPGPDFPTGGIILGREGIKAAYATGKGRVVIRARTVIE 247
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ R +I+ E+PYQ NK+ L+EKIAELV+ +DGI D+RDESDR+GMR++IELK
Sbjct: 248 EA-GRGNRFQIIVTELPYQVNKAALIEKIAELVKVGRIDGIHDLRDESDRTGMRVIIELK 306
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRAR 445
R A P V+N+L++ T LQ +F NM+ ++DG QP+ + LK LQ +L R VV RR
Sbjct: 307 RDAQPRKVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLKRSLQLYLTHREEVVRRRTE 366
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L + + R HI+EG+ + LD+LD VI+ +RE+ + A ++L +F L+E QA+AIL+M
Sbjct: 367 FELLRARRRAHILEGLKIALDHLDAVIKTIRESRTADVARSSLMAKFALTEVQANAILEM 426
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K + + L++QI LE LL+ ILQ+I++E+I+LK F R + +
Sbjct: 427 QLRRLAALERRKIEQDYRDLLKQISGLELLLADPDKILQVIKEELIDLKEAFGDERRTHI 486
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+D SG++ D D+IP +L+ ++ +GYVKR+ T+ Q+RG G + +R D +
Sbjct: 487 QDM-SGEITDEDLIPEVNVLVMLTNRGYVKRLPDGTYRTQHRGGRGVTGMTVRETDGVQR 545
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
+ +HD +L+F++RG V+ + +++P+ R A GTP++ ++ + GE IT+++PV F
Sbjct: 546 MVAANSHDSLLFFTNRGRVFHIKVHELPDAGRTAKGTPVINLIGIQPGEAITTLLPVRNF 605
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
A +L M T +G +K+ L+ FSS+R +G+IAI L GDEL WVR + D + + +++
Sbjct: 606 ADATYLFMCTRSGRVKRTRLDQFSSVRASGLIAISLDEGDELAWVRMTSGSDDLILVTEH 665
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G I + +R++ R G + +R+ D++ + +++ P+
Sbjct: 666 GQSIRFHEEDVRAMGRQAAGVIGIRMNHEDRVIAAEVV----------APDCD------- 708
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGES 864
LL VS +G+GKR PL +R +G+ K + + LAA VV +
Sbjct: 709 ----LLVVSANGYGKRTPLDEYRVQNRGGLGITAMKVTERNGPLAAARVVCDT------- 757
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ ++LVS G V R+ IS R +GV +MR+ + S ++I T+ E
Sbjct: 758 -DTIMLVSTHGMVIRVPAAQISRIGRATQGVGIMRVHNDDVVASLTVIRTTQDE 810
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 27/233 (11%)
Query: 585 LLAISEKGYVKRMKPNTFN-LQNRGTI------GKSVGKLRVNDAMSDFIVCRAHDHVLY 637
L + G VKR + + F+ ++ G I G + +R+ D I+ H +
Sbjct: 611 LFMCTRSGRVKRTRLDQFSSVRASGLIAISLDEGDELAWVRMTSGSDDLILVTEHGQSIR 670
Query: 638 FSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMN 697
F + + RA R AAG V + ++ +R+ I A D L++++ N
Sbjct: 671 FHEEDV----RA-----MGRQAAG---VIGIRMNHEDRV---IAAEVVAPDCDLLVVSAN 715
Query: 698 GYIKKVSLNLFSSIRTTGIIAIQLVPGDE----LKWVRCCTNDDLVAMASQNGMVILSSC 753
GY K+ L+ + ++ G + I + E L R + D + + S +GMVI
Sbjct: 716 GYGKRTPLDEYR-VQNRGGLGITAMKVTERNGPLAAARVVCDTDTIMLVSTHGMVIRVPA 774
Query: 754 DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I + R T+G MR+ + D +AS+ +I +++ E S + G+S
Sbjct: 775 AQISRIGRATQGVGIMRVHNDDVVASLTVIRTTQDEEIANVEEASVAPTGGTS 827
>gi|429503538|ref|YP_007184722.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485128|gb|AFZ89052.1| DNA gyrase subunit A [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 819
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/834 (43%), Positives = 551/834 (66%), Gaps = 35/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D +++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE+++ + A+ NPE T QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--IIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L+ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVS F +Q+L T G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ EDS
Sbjct: 661 IIIGTKNGLLIRFPEADVRQMGRTAAGVKGITLTDDDVVVGMEIL-----------EEDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
H +L V+E+G+GKR P S +R GL K + D + V
Sbjct: 710 H----------VLIVTENGYGKRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 755 ATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806
>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
gi|423388219|ref|ZP_17365445.1| DNA gyrase subunit A [Bacillus cereus BAG1X1-3]
gi|423416595|ref|ZP_17393684.1| DNA gyrase subunit A [Bacillus cereus BAG3X2-1]
gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
gi|401109979|gb|EJQ17895.1| DNA gyrase subunit A [Bacillus cereus BAG3X2-1]
gi|401643407|gb|EJS61104.1| DNA gyrase subunit A [Bacillus cereus BAG1X1-3]
Length = 823
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +++ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|398309109|ref|ZP_10512583.1| DNA gyrase subunit A [Bacillus mojavensis RO-H-1]
Length = 823
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/835 (42%), Positives = 551/835 (65%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPKVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ N + T+QEL+E++PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +++ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETSSGKER--ILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF NM+ ++DG+PK + LK+ L +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+E+L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+ F D +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTAFEEDLYLFFTTKHGISKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I S +R + R G + L D D + M+I+ +
Sbjct: 661 IIIGTKNGLLIRFSETDVREMGRTAAGVKGITLTDDDIVVGMEIL-------------EE 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
S+V L V+E G+GKR P +R GL K + + L AV
Sbjct: 708 ESDV--------LIVTEKGYGKRTPAEEYRTQSRGGKGLKTCKITENNGHLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DIS R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISTTGRVTQGVRLIRMAEQEHVATVALV 806
>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
Length = 821
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/835 (42%), Positives = 552/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K +K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E++PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E +L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 MIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L V
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVTV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806
>gi|423451257|ref|ZP_17428110.1| DNA gyrase subunit A [Bacillus cereus BAG5X1-1]
gi|401146265|gb|EJQ53781.1| DNA gyrase subunit A [Bacillus cereus BAG5X1-1]
Length = 824
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/823 (43%), Positives = 548/823 (66%), Gaps = 41/823 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K+RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKDRFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + +GM+I + +RS+ RN G A+ L + D++ M+I+ ED+
Sbjct: 662 IIVGTSDGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIV-----------EEDT 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ +L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 711 N----------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ +G + R+ V IS R +GV L+RL
Sbjct: 758 ---TGEED--IMLITVAGVIIRMPVDQISQMGRNTQGVRLIRL 795
>gi|404329036|ref|ZP_10969484.1| DNA gyrase subunit A [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 819
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/840 (43%), Positives = 550/840 (65%), Gaps = 36/840 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ PV++ ++M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ELG+++ K +KK
Sbjct: 8 RVKPVDIGQQMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGITADKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVYD++VRMAQDFS RY L+ GHGNFGS+D DPAAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSQRYELVDGHGNFGSVDGDPAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S M+ DI +DT++F PN+D+S++EP +LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKISMEMV-RDIRKDTIDFQPNYDDSEQEPVVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NPE TL+EL++Y+PGPDFPTGGLI+G GI AYRTGRG I VR +
Sbjct: 187 QLGEVIDAVLALSKNPEITLEELMQYIPGPDFPTGGLILGREGIKRAYRTGRGSIIVRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + K+ + +++ E+PYQ NK+ L+E+IAELV++K LDGI+D+RDESDRSGMR+V
Sbjct: 247 VTIE--EQKNGKQSIVVTELPYQVNKAKLIERIAELVKDKKLDGITDLRDESDRSGMRMV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE++R A+ ++++N+LY+ T LQ+SF N + ++DG+P+ + LKE L +L F+ SV+ R
Sbjct: 305 IEVRRDANANVILNNLYKHTGLQTSFGINTLALVDGRPQVLTLKECLHYYLVFQESVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + + R HI+EG+ + LD+LD VI ++R + + A L +F L+E QA AI
Sbjct: 365 RTQFELKKAEARAHILEGLRIALDHLDEVITLIRNSKTTDIAREGLMSQFSLTEIQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + L+ +I +L+ +L+ + +L +I +E+ E+K++++ R
Sbjct: 425 LDMRLQRLTGLEREKIQQEYEELIRRIGELKAILADEQKVLHIIRKELREIKDKYNDQRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + + ++D D+I +E+++ +S KGYVKRM +T+ QNRG G+ + + N
Sbjct: 485 TEIT-VGADMIEDEDLIEREEIVITVSHKGYVKRMPVDTYKSQNRG--GRGIQGMGTNED 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + H HVL+F+++G V+ + Y+IPE R A G PL+ ++ + E I++
Sbjct: 542 DFVEHIFQTNTHHHVLFFTNKGRVFQLKGYEIPELGRTAKGIPLINLIQIDKDEYISAFF 601
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV F G +LV LT G K+ SL F++IR G+ AI + DEL VR +
Sbjct: 602 PVEAFDGQHYLVFLTKKGITKRSSLIDFANIRKGGLFAITVHDDDELIAVRLTDGKRHLI 661
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM I + +R + R G A+ L D++ M I A KD
Sbjct: 662 VGTKNGMAIRYDENDVRPMGRTAAGVKAISLDPDDEVVGMGI--ADDDKD---------- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+E+G GKR +R P R G G K + +++E
Sbjct: 710 ---------VLIVTENGFGKRTATEEYR--PQTRGGK-GLKTCNITEKNGKMINLRTVSE 757
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
DE +++++ +G + R+ V DIS R GV L+R++ + + + I TE ET+
Sbjct: 758 ----DEDLMIITANGVIIRMAVADISRLGRNTMGVTLIRVDKGDHVAAVARIQNTEDETE 813
>gi|269926182|ref|YP_003322805.1| DNA gyrase subunit A [Thermobaculum terrenum ATCC BAA-798]
gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
Length = 809
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/830 (43%), Positives = 550/830 (66%), Gaps = 35/830 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
PV++ +EM SY+ Y+MSV++ RALPDVRDGLKPV RR L+AM++LGL+ ++K A +
Sbjct: 8 PVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSAGI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVL +HPHGD+AVYD+LVRMAQDF+LRYPL+ G GNFGS+D D AAAMRYTE RL
Sbjct: 68 VGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARLTG 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
L+E LL DID+DTV+FVPN+D+S++EP +LP+R+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 LAEE-LLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNLR 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ D L LI +P+AT+++L + + GPDFPTGG+I+G GIL AY TG+G+I VR K +
Sbjct: 187 EICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E L + R +I+ E+PYQ NK+ L+EKIAELV+ + + ISDIRDESDR+GMRIVIEL
Sbjct: 247 EEL--RGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIEL 304
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ-PKQMGLKEVLQAFLDFRCSVVERRA 444
+R A P V+N LY+ T +Q++F N + ++DG P+ + LK++++ +++ R V+ RR
Sbjct: 305 RREAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRT 364
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
+ L + + R H++EG+M+ L NLD VI +R + S A L +F L+E QA AILD
Sbjct: 365 EYDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQDFGLTEVQAQAILD 424
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M LRRL LER+K DE K + QI + E +L+S + +L +++ ++ E+++++ R +
Sbjct: 425 MQLRRLAALERQKIEDELKEVRAQIREYESILASPEKVLAIVKSDLQEIRDKYGDERRTK 484
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ +A SG + D D+IPN E+ ++++++GY+KR+ P+T+ Q RG G + ++ +D +
Sbjct: 485 IVEA-SGDIRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGVKDSDVVE 543
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+VC D VL+F+++G VY +A++IP+ +R + G PLV +++L ER+T +I V E
Sbjct: 544 HLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSKGLPLVNLINLEPHERVTEVIAVRE 603
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMAS 743
F D++L +T NG IK+ SL +SS+R+ G+IA+ L GDEL+ VR NDD++ + +
Sbjct: 604 FKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLGDNDDILVLTA 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ + + D +R R G A+RL +GD++ +M+++
Sbjct: 664 KGQSIRFPASD-VRPTGRQAIGVTAIRLSEGDEVVAMEVV-------------------- 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
SG +L V++ G GKR + F + R G +++ + A
Sbjct: 703 -QSGAEILLVTKKGFGKRTSIDEFNRQA--RAGSGARAIKIDEKTG-----DLATARMAP 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
D +V++ S SG V R+K IS Q++ ARGV LM L+ + + S ++I+
Sbjct: 755 EDSEVLIASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSLAIIA 804
>gi|375086641|ref|ZP_09733045.1| DNA gyrase, A subunit [Megamonas funiformis YIT 11815]
gi|374564577|gb|EHR35864.1| DNA gyrase, A subunit [Megamonas funiformis YIT 11815]
Length = 814
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/839 (42%), Positives = 552/839 (65%), Gaps = 33/839 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ +I+PV L +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+K
Sbjct: 7 TGKILPVNLEDEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMQEAGMGSNKPYK 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD++VYD++VRMAQDFS RY L GHGNFGSID D AAAMRYTE
Sbjct: 67 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSCRYVLADGHGNFGSIDGDSAAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++E ++L DID+ TV+F PN+DES +EPS+LP+++P LL+NG+SGIAVGMATNIP
Sbjct: 127 VRMSKIAE-LMLQDIDKKTVDFTPNYDESLQEPSVLPSKIPNLLVNGSSGIAVGMATNIP 185
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + +I NPE T++EL++ + GPDFPTG +IMG GI+ AY+TGRG + +R
Sbjct: 186 PHNLNEVIDGVLQMIDNPEITVEELMQTIKGPDFPTGAMIMGRDGIISAYKTGRGAVKMR 245
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
TE+ L + R + + E+PYQ NK+ LVE+IAELV +KT+DGI+D+ DESDR+GM
Sbjct: 246 ACTEITTLPNGKPR--ITVTELPYQVNKARLVERIAELVRDKTIDGITDLNDESDRNGMS 303
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVI+L+R A+P +++N LY+ T LQ +F M+ ++DG+P+ + LK+VL ++ + V+
Sbjct: 304 IVIDLRRDANPEVILNQLYQHTQLQETFGVIMLALVDGRPRILNLKQVLHYYIKHQEDVI 363
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L++ + R HI+EG+ + LD+LD +I+ +R++ + +A L ++ L+EKQA
Sbjct: 364 RRRTQYELTKAQARAHILEGLTIALDHLDPIIKTIRDSKNGDSAKEVLMSDYTLTEKQAQ 423
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILD+ L+RLT LER+K +E +++ I L+ +L+ + IL +I++E+ +K +F
Sbjct: 424 AILDLRLQRLTGLEREKIENEYLEILDYISDLQNILADEQKILDIIKEELSAVKAKFGDA 483
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D DS +D D+I +++++ ++ Y+KR+ T+ Q RG G + +
Sbjct: 484 RRTQITD-DSSDVDIADLIAEEDVVITLTHNNYIKRIPVTTYRNQKRGGRGVTGMGTKEE 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + I+ H+ +L+F+++G+VY + Y+IPE R A GT +V +L L+ E IT+II
Sbjct: 543 DYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEETITAII 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR-TTGIIAIQLVPGDELKWVRCCTNDDLV 739
P+ EF+ D++L M T +G +KK L+ F + R TG+IA+ L DEL V+ + +
Sbjct: 603 PIKEFSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGVKLTDGNRQI 662
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ +++GM I + +R + R RG + ++LK D + MD I D E
Sbjct: 663 IIGTRDGMSICFNEQDVRPMGRTARGVIGIKLKGEDTVIGMDNI----RDDCE------- 711
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+E G GKR S +R +GLI K + + FV+G +
Sbjct: 712 ----------VLTVTEHGFGKRTATSEYRTQTRGGIGLINIKVTEK----TGFVIGIKVV 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+S ++ +L+S G V R + ++S+ R +GV +M ++ + K+ + + + E +
Sbjct: 758 ---DSQQEFMLISTEGIVIRSNIEEVSVIGRNTQGVKMMNMDNNDKVAALAAFEIKEDD 813
>gi|387928231|ref|ZP_10130909.1| DNA gyrase subunit A [Bacillus methanolicus PB1]
gi|387587817|gb|EIJ80139.1| DNA gyrase subunit A [Bacillus methanolicus PB1]
Length = 831
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/826 (44%), Positives = 546/826 (66%), Gaps = 37/826 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN R+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ + K
Sbjct: 5 PN--SRVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHADK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VGEV+GK+HPHGD+AVYDS+VRMAQDF+ RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYDSMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D ++KEP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYQDNYDGAEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + AL NP+ T+QEL+E +PGPDFPT GLI+G GI AY TGRG I
Sbjct: 182 NIPPHQLGEVIDGVLALSKNPDITIQELMEVIPGPDFPTAGLILGKRGIRKAYETGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
T+R + E+E + + +I+KE+PYQ NK+ L+EKIAELV +K +DGISD+RDESDR+
Sbjct: 242 TLRARVEIE--QKSNDKEVIIVKELPYQVNKAKLIEKIAELVRDKKIDGISDLRDESDRN 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE+++ A+ ++++N+LY+ TALQ+SF N++ +++GQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKQCLQHYLDHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F L + + R HI+EG+ + LD+LD VI ++R + + A L F LSEK
Sbjct: 360 VVIRRRTEFDLRKAEARAHILEGLRIALDHLDEVINLIRNSQTTDIAREGLMTRFHLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E ++L++ I +L+ +L+ + +L++I +E+ E+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKAILADEEKVLEIIREELSEIKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + ++D D+IP + +++ ++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDERRTEIVAGGIEFIEDEDLIPRENIVVTLTHNGYIKRLPVSTYRAQKRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + I HD +L+F+++G VY A+ Y+IPE +R A G P+V +L + E
Sbjct: 538 GTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIVNLLEVDKDEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
I +IIPV EF + +L T G K+ L+ F+ IR G+IA+ L GDEL VR
Sbjct: 598 INAIIPVEEFDENWYLFFTTKEGISKRSPLSSFAHIRNNGLIALNLREGDELISVRLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++NGM+I +RS+ R G + L +GD++ M+++
Sbjct: 658 TKHIIIGTKNGMLIRFPETDVRSMGRTATGVKGISLDEGDEVIGMEVL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
E+++ +L V+++G+GKR P S +R + G G K + + V
Sbjct: 706 EENND---------ILIVTKNGYGKRTPASEYR---VQGRGGKGIKTCNITKKSGNLVAM 753
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++ GE D ++L++ G + RI V IS+ R +GV L+RLE
Sbjct: 754 KAVT--GEED--LMLITAGGVLIRIDVGGISVMGRNTQGVKLIRLE 795
>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
Length = 823
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|423461726|ref|ZP_17438522.1| DNA gyrase subunit A [Bacillus cereus BAG5X2-1]
gi|401134959|gb|EJQ42565.1| DNA gyrase subunit A [Bacillus cereus BAG5X2-1]
Length = 823
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +++ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
gi|423399669|ref|ZP_17376842.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-2]
gi|423479641|ref|ZP_17456356.1| DNA gyrase subunit A [Bacillus cereus BAG6X1-1]
gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
gi|401657790|gb|EJS75295.1| DNA gyrase subunit A [Bacillus cereus BAG2X1-2]
gi|402425236|gb|EJV57391.1| DNA gyrase subunit A [Bacillus cereus BAG6X1-1]
Length = 823
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +++ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
gi|375282107|ref|YP_005102539.1| DNA gyrase subunit A [Bacillus cereus NC7401]
gi|384177916|ref|YP_005563678.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|423355977|ref|ZP_17333601.1| DNA gyrase subunit A [Bacillus cereus IS075]
gi|423374936|ref|ZP_17352273.1| DNA gyrase subunit A [Bacillus cereus AND1407]
gi|423571386|ref|ZP_17547629.1| DNA gyrase subunit A [Bacillus cereus MSX-A12]
gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
[Bacillus cereus Q1]
gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350627|dbj|BAL15799.1| DNA gyrase, A subunit [Bacillus cereus NC7401]
gi|401080924|gb|EJP89206.1| DNA gyrase subunit A [Bacillus cereus IS075]
gi|401093152|gb|EJQ01267.1| DNA gyrase subunit A [Bacillus cereus AND1407]
gi|401201207|gb|EJR08083.1| DNA gyrase subunit A [Bacillus cereus MSX-A12]
Length = 823
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/824 (43%), Positives = 544/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DE ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 -----TGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
Length = 823
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 547/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +++ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A +L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
Length = 844
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 538/823 (65%), Gaps = 37/823 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S R+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ S KP+K
Sbjct: 6 SSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S LL DI++DT+++ N+D ++EP +LPAR P LL+NG +GIAVGMATNIP
Sbjct: 126 SRMSKIS-MELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ P+ T+QEL+E +PGPDFPT G+I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K ++E + + +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKVDIET--KSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+++ A+ S+++N+LY+LTALQ+SF NM+ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEVRKDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + + R HI+EG+ + LD+LD VI ++R + + A L +F+LS+KQA
Sbjct: 363 RRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE ++L++ I +LE +L+ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + Q++D D+IP + +++ ++ GYVKR+ +T+ Q RG G+ + + N
Sbjct: 483 RRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRG--GRGIQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I H+ +L+F+++G VY A+ Y+IPE +R A G P++ +L ++ E + +
Sbjct: 541 EDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGINKDEWVNA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IPV EF + FL T G K+ L F +IR G+IA+ L GDEL VR
Sbjct: 601 VIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIRNNGLIALNLREGDELISVRLTDGSKE 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG +I +RS+ R G + L D++ M++ LE E
Sbjct: 661 IIIGTKNGQLIRFPETDVRSMGRTATGVKGITLDSDDEVVGMEV--------LEENSE-- 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL-IGYKFSAEDRLAAVFVVGFS 857
+L V++ G+GKR P +R G+ G + AV VV
Sbjct: 711 -----------ILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVAVKVV--- 756
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ G + R+ V DIS R +GV L+R+
Sbjct: 757 ---TGEED--IMLITTGGVLIRMAVGDISTMGRNTQGVRLIRI 794
>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
Length = 823
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L D D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|365155916|ref|ZP_09352258.1| DNA gyrase subunit A [Bacillus smithii 7_3_47FAA]
gi|363627841|gb|EHL78685.1| DNA gyrase subunit A [Bacillus smithii 7_3_47FAA]
Length = 821
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/833 (42%), Positives = 544/833 (65%), Gaps = 33/833 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S R+ V + +EM S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AM++LG++ K +K
Sbjct: 6 SSRVQEVNISQEMRSSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMNDLGMTPDKAYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVY+++VRMAQDFS RY L+ GHGNFGSID DPAAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDPAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S LL DI++DT+++ N+D S+KEP +LP+R P LL+NG+SGIAVGMATNIP
Sbjct: 126 ARMSKIS-MELLRDINKDTIDYKDNYDGSEKEPEVLPSRFPNLLVNGSSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + AL NP+ T+ EL+EY+PGPDFPT GLIMG GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDGILALSKNPDITISELMEYIPGPDFPTAGLIMGRRGIRRAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + + +II EIPYQ NK+ L+EKIAEL +K +DGI+D+RDESDR GMR
Sbjct: 245 AKAEIET--KSNGKEAIIITEIPYQVNKAKLIEKIAELARDKRIDGITDLRDESDRRGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+++ A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L +L+ + V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKHTALQTSFGINLLALVDGQPKVLNLKQCLHYYLEHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + + R HI+EG+ + LD++D +I ++R + + A L + F LSEKQA
Sbjct: 363 RRRTEFDLRKAEARAHILEGLRIALDHIDEIINLIRSSQTTDIARQGLMERFSLSEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + L+ I +L+ +L+ + +LQ+I E++E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQNLIRLIAELKAILADEEKVLQIIRDELLEIKERFNDK 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D+ +++D D+IP + ++++++ GY+KR+ +T+ Q RG G N
Sbjct: 483 RRTAIMDSGVDEIEDEDLIPEENIVISLTHNGYIKRLPLSTYKSQKRGGRGIQGMGTNEN 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + I HD +L+F+++G VY + Y+IPE R A G P++ +L + E I ++I
Sbjct: 543 DFVEHLITTSTHDTILFFTNKGKVYKTKGYEIPELGRTAKGIPIINVLGIEKDEWINTMI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V E+ + +LV T +G K+ L ++ IRT G+IA+ L DEL V+ + +
Sbjct: 603 AVEEYHENWYLVFTTKHGITKRTPLREYAHIRTNGLIALTLRENDELISVKLTDGNQDIV 662
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM+I +RS+ R + G + L D D++ M++ LH
Sbjct: 663 IGTKNGMMIRFKETEVRSMGRTSTGVKGITLDDDDEVIGMEL----LH------------ 706
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
G +L V+ +G+GKR + +R GL + + ++ L A+ +
Sbjct: 707 -----DGEEVLIVTRNGYGKRTHEAEYRIQGRGGKGLRTCRITPKNGPLVAIKTIS---- 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
GE D ++L++ G + R+ V+DIS R A+GV L+RL+ + + +++
Sbjct: 758 --GEED--IMLMTAGGVLIRMDVQDISRTGRNAQGVKLIRLDEDEYVATVAVV 806
>gi|389574652|ref|ZP_10164712.1| DNA gyrase subunit A [Bacillus sp. M 2-6]
gi|388425774|gb|EIL83599.1| DNA gyrase subunit A [Bacillus sp. M 2-6]
Length = 834
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/835 (43%), Positives = 545/835 (65%), Gaps = 35/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P + V + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KPFK
Sbjct: 6 TPNVREVNISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ R L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRNMLVEGHGNFGSVDGDGAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL +S +L DI +DT+++ N+D S++EP ++PAR P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARLSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPARFPNLLVNGATGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NPE T QEL++ +PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K+ +E S +R ++I EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKSNIEETSSGKQR--IVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A+ +++N+LY+ T LQ+SF N++ ++DGQPK + LK+ L+ +L+ + ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L + + LSEKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE K L+E I +L+ +L+ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEDEYKGLVELIAELKAILADNEKVLEIIREELTEIKERFNDT 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+IP + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF D +L T +G K+ SL+ F++IR G+IA+ L DEL VR +
Sbjct: 601 IIPVSEFDEDSYLFFTTRHGVSKRTSLSQFANIRNNGLIALSLRDEDELMAVRLTNGEKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++ GM+I +R + R G + L + D + M+I+ +
Sbjct: 661 IIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVVGMEIL-------------EP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+NV L V+E G+GK P +R GL K + + L AV
Sbjct: 708 DANV--------LIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A + E++E +++++ SG + R+ V DIS R +GV L+RL + + +L+
Sbjct: 754 KATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDDEHVATVALV 808
>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
[Bacillus cereus E33L]
Length = 823
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 18/212 (8%)
Query: 578 IIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
IIP +D+ L +++G KR ++F N++ G I S LR D + +
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAIS---LREEDEVISVRLTSG 658
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
++ + G++ + RNAAG V+ ++L + +++ + V E D +
Sbjct: 659 DKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGEEDQVVGMEIVEE---DVNV 712
Query: 692 VMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMV 748
+++T NGY K+ ++ + S G+ + + +L V+ T ++ + + + G++
Sbjct: 713 LIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVI 772
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
I D I + RNT+G +RL+D ++A++
Sbjct: 773 IRMPVDQISQMGRNTQGVRLIRLEDEQEVATV 804
>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
Length = 823
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/824 (43%), Positives = 546/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E++PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF DQFL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
SAFR-032]
Length = 839
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/835 (43%), Positives = 547/835 (65%), Gaps = 35/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P + V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KPFK
Sbjct: 6 TPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL +S +L DI +DT+++ N+D S++EP ++PAR P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARLSKIS-MEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NPE T QEL++ +PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K+ +E S +R ++I EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKSNIEETSSGKQR--IVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A+ +++N+LY+ T LQ+SF N++ ++DGQPK + LK+ L+ +L+ + ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L + + LSEKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE K L++ I +L+ +L+ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEIKERFNDT 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+IP + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF + +L T +G K+ +L+ F++IR G+IA+ L DEL VR +
Sbjct: 601 IIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELMAVRLTNGEKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++ GM+I +R + R G + L + D + M+I+ +
Sbjct: 661 IIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVVGMEIL-------------EP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+NV L V+E G+GK P +R GL K + + L AV
Sbjct: 708 DANV--------LIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A + E++E +++++ SG + R+ V DIS R +GV L+RL + + +L+
Sbjct: 754 KATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALV 808
>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
Length = 834
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/810 (44%), Positives = 529/810 (65%), Gaps = 35/810 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDG+KPVHRRIL+AM ELG++ KP KK AR+VGEV+G
Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDKPHKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+S+VRMAQDFS+RY L+ GHGNFGSID D AAAMRYTE RL ++ ML
Sbjct: 77 KYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI+++T++F PN+D ++EP +LPAR P LL+NG SGIAVGMATNIPPHNLGE++D +
Sbjct: 137 -RDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATNIPPHNLGEVIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+I NP+ T EL+EY+ GPDFPT G I+G GI AYRTGRG +T+R K +E ++K
Sbjct: 196 QAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVTMRAKATIEENNNK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ EIPYQ NK+ LVEKIAELV K +DGI+D+RDESDR+GMRIVIEL+R +P
Sbjct: 256 AR---IVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMRIVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+LY+ TA+QS+F NM+ I++ +PK + L++VL +L+ + +V+ RR F+L +
Sbjct: 313 NVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVIRRRTEFELKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ V LD+LD VI ++R + + A L + F LS +QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSHEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E + L+ +I +L E+L++ +LQ+I E+ E+K RF+ R + + +
Sbjct: 433 GLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRTEITVGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +E+++ I+ GY+KR+ NT+ Q RG G + D + V +
Sbjct: 493 ILDE-DLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G Y +AY+IPE +R A GTP++ ++ + GE I ++IPV F D +L
Sbjct: 552 HHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVENFDSDNYL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T G +KK L + +IR G+IAI L D L V+ + M + GM I
Sbjct: 612 FFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + L D D++ MD++ L +L
Sbjct: 672 KESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELD---------------------IL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQVVL 870
V+ G+GKR P S +R G+ + ++ + A+ VV +S+E +++
Sbjct: 711 IVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVV--------KSEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ SGT+ R + IS RYA+GV L+ +
Sbjct: 763 ITASGTIIRTSMEGISTMGRYAQGVKLINI 792
>gi|410458122|ref|ZP_11311885.1| DNA gyrase subunit A [Bacillus azotoformans LMG 9581]
gi|409931750|gb|EKN68726.1| DNA gyrase subunit A [Bacillus azotoformans LMG 9581]
Length = 838
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/822 (44%), Positives = 544/822 (66%), Gaps = 37/822 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I + L EM S++ Y+MSV++ RALPDVRDGLKPVHRRILFAM+ELG ++ K KK
Sbjct: 7 QIQEINLSTEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNELGNTADKAHKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D DPAAAMRYTE R
Sbjct: 67 ARIVGDVIGKYHPHGDSAVYEAMVRMAQDFNFRYMLVDGHGNFGSVDGDPAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ ML DI++DT+++ N+D S+KEP +LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 127 MSKLAMEML-RDINKDTIDYQDNYDGSEKEPVVLPARFPNLLVNGASGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
+LGE++D + A+ N + T+ EL+E +PGPDFPT G I+G GI AY TGRG IT+R K
Sbjct: 186 HLGEVIDGVLAVSRNRDITIAELMEIVPGPDFPTAGQILGRSGIRRAYETGRGSITLRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+ +E + + R +II EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR+GMRIV
Sbjct: 246 SFIE--EKANGRQTIIINEIPYQVNKAKLIEKIAELVHDKKIEGISDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+KR A+ ++++N+L++LTALQSSF NM+ ++DG PK + LK++L +LD + ++ R
Sbjct: 304 IEVKRDANANVLLNNLFKLTALQSSFGINMLALVDGHPKVLNLKQMLSHYLDHQIVIIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD++D +I ++R + + A L + F LSEKQA AI
Sbjct: 364 RTEFELRKAEARAHILEGLRIALDHIDEIISLIRASQTTDIARQGLMERFNLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E + L++ I +L+ +L+ + +L +I +E+ E+K RF R
Sbjct: 424 LDMRLQRLTGLEREKIEEEYQELIKLIAELKAILADEEKVLDIIREELTEIKERFYDKRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + G+++D D+IP ++++++ KGY+KR+ +T+ Q RG G+ V + N
Sbjct: 484 TEIISGSFGEIEDEDLIPEQSIVISLTHKGYIKRLPADTYRSQRRG--GRGVQGMGTNED 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H+ +L+FS++G VY + Y+IPE +R A G P++ +L + E I ++I
Sbjct: 542 DFVEHLLSTSTHNTILFFSNKGKVYRLKGYEIPEFSRTAKGIPIINLLEIEKDEWINAVI 601
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF D +L T G +K+ SL+ F++IR G+IA+ L GDE+ V +
Sbjct: 602 PVEEFLDDWYLFFATKQGVVKRSSLSSFANIRKGGLIALHLREGDEVISVGLTDGQREIM 661
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM+I + +RS+SR G + L + D + M+II ED
Sbjct: 662 IGTKNGMLIRFNETDVRSMSRLATGVKGINLNEDDHVIGMEIIEG---------KED--- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
+L V+ G+GKR PLS +R G+ + ++ L+A+ V
Sbjct: 710 ---------VLVVTRHGYGKRTPLSEYRMQSRGGKGIKTCNITEKNGPLSAIKAV----- 755
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L+++SG V R+ V ISI R +GV LMRL+
Sbjct: 756 -TGEED--LMLITESGIVIRMAVDTISITGRNTQGVKLMRLD 794
>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
Length = 834
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/810 (44%), Positives = 529/810 (65%), Gaps = 35/810 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDG+KPVHRRIL+AM ELG++ KP KK AR+VGEV+G
Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDKPHKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+S+VRMAQDFS+RY L+ GHGNFGSID D AAAMRYTE RL ++ ML
Sbjct: 77 KYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI+++T++F PN+D ++EP +LPAR P LL+NG SGIAVGMATNIPPHNLGE++D +
Sbjct: 137 -RDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATNIPPHNLGEVIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+I NP+ T EL+EY+ GPDFPT G I+G GI AYRTGRG +T+R K +E ++K
Sbjct: 196 QAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVTMRAKATIEENNNK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ EIPYQ NK+ LVEKIAELV K +DGI+D+RDESDR+GMRIVIEL+R +P
Sbjct: 256 AR---IVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMRIVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+LY+ TA+QS+F NM+ I++ +PK + L++VL +L+ + +V+ RR F+L +
Sbjct: 313 NVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVIRRRTEFELKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ V LD+LD VI ++R + + A L + F LS +QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSHEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E + L+ +I +L E+L++ +LQ+I E+ E+K RF+ R + + +
Sbjct: 433 GLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRTEITVGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +E+++ I+ GY+KR+ NT+ Q RG G + D + V +
Sbjct: 493 ILDE-DLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G Y +AY+IPE +R A GTP++ ++ + GE I ++IPV F D +L
Sbjct: 552 HHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVENFDSDNYL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T G +KK L + +IR G+IAI L D L V+ + M + GM I
Sbjct: 612 FFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + L D D++ MD++ L +L
Sbjct: 672 KESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELD---------------------IL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQVVL 870
V+ G+GKR P S +R G+ + ++ + A+ VV +S+E +++
Sbjct: 711 IVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVV--------KSEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ SGT+ R + IS RYA+GV L+ +
Sbjct: 763 ITASGTIIRTSMEGISTMGRYAQGVKLINI 792
>gi|354582068|ref|ZP_09000971.1| DNA gyrase, A subunit [Paenibacillus lactis 154]
gi|353200685|gb|EHB66145.1| DNA gyrase, A subunit [Paenibacillus lactis 154]
Length = 831
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/831 (43%), Positives = 542/831 (65%), Gaps = 36/831 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDG+KPVHRRIL+AM ELG++ KP+KK AR+VGEV+G
Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDKPYKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+S+VRMAQDFS+RY L+ GHGNFGSID D AAAMRYTE RL ++ ML
Sbjct: 77 KYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI+++T++F PN+D ++EP +LPAR P LL+NG SGIAVGMATNIPPHNLGE++D +
Sbjct: 137 -RDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATNIPPHNLGEVIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+I NP+ T EL+EY+ GPDFPT G I+G GI AYRTGRG +T+R K +E ++K
Sbjct: 196 QAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVTMRAKATIEENNNK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ EIPYQ NK+ LVEKIAELV +K +DGI+D+RDESDR+GMRIVIEL+R +P
Sbjct: 256 AR---IVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMRIVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+LY+ TA+QS+F NM+ I++ +PK + L++VL +L+ + +V+ RR F+L +
Sbjct: 313 NVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLHYYLEHQVTVIRRRTEFELKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ + LD+LD VI ++R + + A L + F LS++QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLMERFGLSQEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E + L+ +I +L E+L++ +LQ+I E+ ++K RF+ R + + +
Sbjct: 433 GLEREKIENEYQELLARIAELREILANEHLVLQIINDELQDIKERFADERRTEITVGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +E+++ I+ GY+KR+ NT+ Q RG G + + D + V +
Sbjct: 493 ILDE-DLIPREEVVITITHTGYIKRLPANTYRSQKRGGRGVVGMETKSEDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G Y +AY+IPE +R A GTP++ ++ + GE + ++IPV F D+FL
Sbjct: 552 HHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGETVNAVIPVESFDTDKFL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T +G +KK L + +IR G+IA+ L D L V+ + M + GM I
Sbjct: 612 FFATRHGVVKKTPLEDYVNIRKGGLIAVNLREDDSLIDVKLTDGQQEIIMGTAQGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + L +GD++ MD++ L +L
Sbjct: 672 EESDVRSMGRSATGVKGITLDEGDEVIGMDVVDPELD---------------------IL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQVVL 870
V+ G+GKR P +R G+ + ++ + A+ VV +S+E +++
Sbjct: 711 IVTTRGYGKRTPAGDYRVQTRGGKGIKTINITEKNGPVVALKVV--------KSEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT-EPETD 920
++ SGT+ R + IS RYA+GV L+ + + + + EPE D
Sbjct: 763 ITASGTLIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKSDEPEND 813
>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
Length = 816
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/836 (43%), Positives = 551/836 (65%), Gaps = 37/836 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ RI+P+E+ EM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M+EL LS KP++
Sbjct: 7 TSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPDKPYR 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+VLGK+HPHGD++VY ++V+MAQDFS R PL+ GHGNFGS+D D AAMRYTE
Sbjct: 67 KSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ LS LL DID++TV+F PNFDES KEP +LPAR P LL+NG++GIAVGMAT+IP
Sbjct: 127 ARMSKLS-MELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMATSIP 185
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D LI P+A ++EL+ Y+ GPDFPTG +IMG I +AYRTGRG+I VR
Sbjct: 186 PHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKIKVR 245
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E+E L ++ +++ EIPYQ NK+ LVE+IAELV++K ++GISD+RDES+R+GMR
Sbjct: 246 ARAEIEELPKGKQQ--IVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGMR 303
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR + +I++N+LY+ + ++ + S M+ +++G+PK + LKEVL +++ + VV
Sbjct: 304 IVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDVV 363
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +++L++ + R HI+EG+ + LDN+D VI +R + ++S A L + F L+E QA
Sbjct: 364 TRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFGLTEIQAQ 423
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL+M L RLT LER+K E LM++I +L+E+L+S + +L +I+ E+IE+KN+++
Sbjct: 424 AILEMRLNRLTGLEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEIKNKYTDE 483
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + ++ A+ G++D ID+I +E+ + ++ GY+KR+ +T+ Q RG G S R
Sbjct: 484 RRTEIQHAE-GEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISALTTREE 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + I H +L+F++RG V+ AY+IPE R A GT +V +L L GE+I ++I
Sbjct: 543 DFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGEKIATLI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V +++L++ T G +KK ++ F +I +G+I+I L GDE+ V+ + V
Sbjct: 603 DVDGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTDGEQDVM 662
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NGM I S +R + R G + L +GD + SM +
Sbjct: 663 LVTRNGMSIRFSEKDVRGMGRTAMGVKGITLGEGDTVVSMSL------------------ 704
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
S G +L VSE+G GKR L +R G+ Y S + +VG +
Sbjct: 705 ---ASEGTDMLVVSENGFGKRTDLEEYRSQIRAGKGIKTYNISEK----TGSIVGAEMVA 757
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ D+++++++ G + RIKV +ISI R GV LM ++ + S++S+ +
Sbjct: 758 E---DDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVD-----EEVSIVSIAK 805
>gi|383752861|ref|YP_005431764.1| putative DNA gyrase subunit A [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381364913|dbj|BAL81741.1| putative DNA gyrase subunit A [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 809
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/830 (43%), Positives = 536/830 (64%), Gaps = 32/830 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EM YI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+KK
Sbjct: 7 KIVPVNLEHEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS+RY L GHGNFGS+D DPAAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDTSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +SE M+L DID++TV+FVPN+DES KEPS+LPA+ P LL+NG SGIAVGMATNIPPH
Sbjct: 127 MSKISE-MMLQDIDKETVDFVPNYDESLKEPSVLPAKFPQLLVNGTSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D LI NP+ T++EL+ + GPDFPT GLI+G GI AY TGRG + +R
Sbjct: 186 NMREVIDGTLMLIDNPDTTIEELMTVIKGPDFPTAGLILGKEGIKQAYTTGRGIVKMRAN 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L + R +++ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GM IV
Sbjct: 246 AHIETLSNGKPR--IVVTELPYQVNKARLIEKIAQLVRDKQIEGITDLRDESDRNGMHIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+L+R A+ ++++N L++ T LQ SF M+ ++DG+P+ + LK+VL ++ + V+ R
Sbjct: 304 IDLRRDANANVILNQLFKHTQLQDSFGVIMLALVDGKPQVLNLKQVLHYYIKHQEEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L + + R HI+EG+ + LD+LD VI +RE+ + A AL FKLS+KQA AI
Sbjct: 364 RTQYELKKAEARAHILEGLTIALDHLDAVITTIRESRTADIAKEALMTGFKLSDKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + ++ I + +L+ + IL +I++E+ +K +F R
Sbjct: 424 LDLRLQRLTGLEREKIEEEYQETLKAIENFKAILADEQKILNIIKEELTAVKEKFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L D+ ++D D+I +++++ ++ Y+KRM +T+ QNRG G + D
Sbjct: 484 TKLT-IDTSEIDVEDLIAEEDVVITLTHNNYIKRMPLDTYRRQNRGGKGIKGMGTKETDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + ++ H +L+F+ RG VYS +AY+I E +R A GT ++ +L L GE+IT++I V
Sbjct: 543 VENLLITTTHHTILFFTTRGRVYSLKAYEIAESSRTAKGTAIINLLQLDQGEKITAVIQV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F D++L M T G +KK SL+ FS++R G+ AI L D+L V+ + + +
Sbjct: 603 KGFDPDRYLFMATRKGIVKKTSLSEFSNLRKNGLNAINLDDDDDLMGVKFTDGESYLMLG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I S D +R++ R RG + L GD++ MDI L R E
Sbjct: 663 TKLGKAIAFSEDDVRAMGRTARGVKGITLSMGDEVVGMDI--------LVRNAE------ 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+E G+GKR +R GLI K + + +VVG +
Sbjct: 709 -------VLTVTECGYGKRTSTDEYRAQTRGGKGLINMKVTEK----TGYVVGIKVV--- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ +++L++ G V R V DIS+ +R +GV LM + K+ S + +
Sbjct: 755 RPEHELMLITTDGIVIRTNVNDISVISRNTQGVKLMTTAENDKVASMATL 804
>gi|381210627|ref|ZP_09917698.1| DNA gyrase subunit A [Lentibacillus sp. Grbi]
Length = 838
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/822 (42%), Positives = 546/822 (66%), Gaps = 37/822 (4%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
P + + L++EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM++LG+ + K +KK
Sbjct: 7 PNVQEINLNQEMRTSFLDYAMSVIVSRALPDVRDGMKPVHRRILYAMNDLGMHADKAYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVY+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 67 SARIVGEVIGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEA 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S LL DI++DT+++ N+D +++EP + PAR P LL+NGA+GIAVGMATNIPP
Sbjct: 127 RMSKIS-MELLRDINKDTIDYTDNYDGTEREPVVFPARFPNLLVNGAAGIAVGMATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
HNLGE +D + A+ +PE T+ EL+E Y+ GPDFPT G I+G GI A+ TG+G +T+R
Sbjct: 186 HNLGETIDAVLAVSKDPEITINELMENYIYGPDFPTAGEILGRSGIRKAFETGKGSVTIR 245
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K ++ + + + +I E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+G+R
Sbjct: 246 AKVHID--EQPNGKSTIIATELPYQVNKARLIEKIAELVRDKRIDGITDLRDESDRNGLR 303
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R A+P+IV+N+LY+ TALQ++F N + ++DG+P+ + +K+ L+ +L+ + +V
Sbjct: 304 VVIELRRDANPNIVLNNLYKYTALQTTFGINTLALVDGRPRVLTIKQCLEYYLEHQKEIV 363
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR F+L + + R HI+EG+ V LD+LD VI ++R + + A L + + LSEKQA
Sbjct: 364 KRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSKTTDIARDGLMENYGLSEKQAQ 423
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K V+E L++QI +L+ +L+ + +L++I +E+ E+K +++ P
Sbjct: 424 AILDMRLQRLTGLEREKIVNEYNELLKQIDELKAILADEEKVLEIIREELAEIKEKYNDP 483
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+IP + +++ ++ +GYVKR+ +T+ Q RG G+ + + N
Sbjct: 484 RRTEIVAGGADFIEDEDLIPEENVVITLTHQGYVKRLPASTYRSQKRG--GRGIQGMGTN 541
Query: 621 DA--MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD +L+F+++G VY A+ Y++PE +R A G P++ +L + GE I +
Sbjct: 542 DDDFVEHLVSTSTHDTILFFTNKGKVYRAKGYEVPEFSRTAKGIPIINLLQIEKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I VSE++ D +L T +G K+ L+ F++IR G+IA+ L DEL VR
Sbjct: 602 VISVSEYSEDYYLFFTTRHGLSKRTKLSQFANIRKGGLIAVGLREEDELISVRLTDGAKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M ++NG +I D +RS+ RN G + L+D D++ SM+I+ L
Sbjct: 662 IMMGTKNGYLIRFPEDQVRSMGRNAAGVRGISLRDDDEVVSMEILDKGLQ---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L V+ G GKR P +R+ G+ K S ++ + AV V
Sbjct: 712 -----------VLHVTNKGIGKRTPEDQYRRTNRGGKGIFTCKLSDDNHVVAVKAV---- 756
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ +G + RI V IS R A+GV L+RL
Sbjct: 757 --TGEED--IMLITAAGVLIRIPVEGISQTGRNAQGVKLIRL 794
>gi|385808592|ref|YP_005844988.1| DNA gyrase subunit A [Ignavibacterium album JCM 16511]
gi|383800640|gb|AFH47720.1| DNA gyrase subunit A [Ignavibacterium album JCM 16511]
Length = 828
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/819 (46%), Positives = 533/819 (65%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EEM SYI Y+MSV++ RALPDVRDGLKPVHRR+LF MHELGL+ +P+KK
Sbjct: 7 KIVPVTLEEEMKSSYIDYAMSVIVARALPDVRDGLKPVHRRVLFGMHELGLAYNRPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD+AVYD++VRM QDFSLRYPL+ G GNFGSID D AAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSAVYDTMVRMVQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +SE ML D+D++TV+F PNFD+S +EP +LP+ LP LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LARISEEML-RDLDKNTVDFGPNFDDSLQEPLVLPSYLPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L ALI NP+ T +L++Y+ PDFPTGG+I G G+ +AY TGRGRI +R K
Sbjct: 186 NLNEVIDGLVALIDNPKLTSADLMKYVKAPDFPTGGIIYGYEGVKEAYTTGRGRILLRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
VE L K+ R +II EIPYQ NKS L+EKIAELV +D IS+IRDESDR G+RIV
Sbjct: 246 ANVETL--KNDRENIIITEIPYQVNKSNLIEKIAELVREGKIDDISNIRDESDRDGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A P++V+N LY+ T +Q +F M+ ++ G PK + L+E++Q FLD R V+ R
Sbjct: 304 IELKRDAQPTVVLNQLYKHTQMQVTFGVIMLALVHGVPKVLTLQEMMQHFLDHRMDVLIR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L ++R HI+EG ++ LDN+D VI ++++ TA L FKLSE QA AI
Sbjct: 364 RTKFELDAAEKRAHILEGYIIALDNIDEVIETIKKSKDVETAKNNLMKRFKLSEIQAKAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LERKK DE K ++ I KL +L S K Q+I++E+I LK R+ R
Sbjct: 424 LDMRLQRLTGLERKKIEDEYKETIKLIEKLRGILDSEKKRKQIIKEELIALKERYGDERR 483
Query: 563 S-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ +++D L+ DII +++++ IS +G++KR + + Q RG G + + +D
Sbjct: 484 TDIIKDYKEFSLE--DIIAEEDVVVTISHQGFIKRFPVSGYRKQARGGKGVTGVGTKEDD 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ V H ++L+F+DRG Y + ++IPE R A G +V +L E IT+ +
Sbjct: 542 FIEHMFVASTHQYILFFTDRGRCYWLKVHEIPEGGRTARGRSIVNLLEKDKEENITAFVA 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF DQ+L+M+T G +KK L+ + ++R GI AI LVPGD+L V+ ++ + +
Sbjct: 602 VKEFRDDQYLIMVTEQGTVKKTVLSAYGNVRKGGINAINLVPGDKLIEVKMTDGNNDIVI 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++NG I +R + R G ++L GDK+ + +I R P+ S
Sbjct: 662 GTRNGFAIRFHEKDVRDMGRTATGVRGIKLVKGDKVVGLLVI---------RHPQTS--- 709
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L V+E G+GKR ++ +R G+I K + D++ + ++ E
Sbjct: 710 --------VLVVTEKGYGKRSDINDYRITKRGGKGVITVKTT--DKVGKM----IAMMEV 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ DE +V++S G V R V+DI + R +GV ++RL
Sbjct: 756 VDKDE-LVIISTQGMVIRQSVKDIRVMGRNTQGVRVIRL 793
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTI-------GKSVGKLRVNDAMSDFIVCRAHD 633
+D+ L+ ++E+G VK+ + + +G I G + ++++ D +D ++ +
Sbjct: 607 DDQYLIMVTEQGTVKKTVLSAYGNVRKGGINAINLVPGDKLIEVKMTDGNNDIVIGTRNG 666
Query: 634 HVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVM 693
+ F ++ + + R A G V+ + L G+++ ++ + +++
Sbjct: 667 FAIRFHEK---------DVRDMGRTATG---VRGIKLVKGDKVVGLLVIRH--PQTSVLV 712
Query: 694 LTMNGYIKKVSLNLFSSIRT--TGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVI 749
+T GY K+ +N + + G+I ++ G + + D+LV +++Q GMVI
Sbjct: 713 VTEKGYGKRSDINDYRITKRGGKGVITVKTTDKVGKMIAMMEVVDKDELVIISTQ-GMVI 771
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASM-DIIP 784
S IR + RNT+G +RL +GD +A + +IP
Sbjct: 772 RQSVKDIRVMGRNTQGVRVIRLNEGDSIADIARVIP 807
>gi|218901212|ref|YP_002449046.1| DNA gyrase subunit A [Bacillus cereus AH820]
gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
gi|423554055|ref|ZP_17530381.1| DNA gyrase subunit A [Bacillus cereus ISP3191]
gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|401181488|gb|EJQ88636.1| DNA gyrase subunit A [Bacillus cereus ISP3191]
Length = 823
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 823
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), A subunit [Bacillus anthracis str. A2012]
gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis str. Tsiankovskii-I]
gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
gi|227812684|ref|YP_002812693.1| DNA gyrase subunit A [Bacillus anthracis str. CDC 684]
gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
gi|229604222|ref|YP_002864663.1| DNA gyrase subunit A [Bacillus anthracis str. A0248]
gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
USA6153]
gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
gi|376264037|ref|YP_005116749.1| DNA gyrase subunit A [Bacillus cereus F837/76]
gi|386733879|ref|YP_006207060.1| DNA gyrase subunit A [Bacillus anthracis str. H9401]
gi|402554402|ref|YP_006595673.1| DNA gyrase subunit A [Bacillus cereus FRI-35]
gi|421508144|ref|ZP_15955060.1| DNA gyrase subunit A [Bacillus anthracis str. UR-1]
gi|421640491|ref|ZP_16081074.1| DNA gyrase subunit A [Bacillus anthracis str. BF1]
gi|423572846|ref|ZP_17548965.1| DNA gyrase subunit A [Bacillus cereus MSX-D12]
gi|423608164|ref|ZP_17584056.1| DNA gyrase subunit A [Bacillus cereus VD102]
gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis str. Tsiankovskii-I]
gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
gi|364509837|gb|AEW53236.1| DNA gyrase subunit A [Bacillus cereus F837/76]
gi|384383731|gb|AFH81392.1| DNA gyrase subunit A [Bacillus anthracis str. H9401]
gi|401216315|gb|EJR23027.1| DNA gyrase subunit A [Bacillus cereus MSX-D12]
gi|401238173|gb|EJR44614.1| DNA gyrase subunit A [Bacillus cereus VD102]
gi|401795612|gb|AFQ09471.1| DNA gyrase subunit A [Bacillus cereus FRI-35]
gi|401821947|gb|EJT21101.1| DNA gyrase subunit A [Bacillus anthracis str. UR-1]
gi|403392444|gb|EJY89697.1| DNA gyrase subunit A [Bacillus anthracis str. BF1]
Length = 823
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
Length = 823
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIMLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|423556992|ref|ZP_17533295.1| DNA gyrase subunit A [Bacillus cereus MC67]
gi|401193767|gb|EJR00769.1| DNA gyrase subunit A [Bacillus cereus MC67]
Length = 823
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/823 (43%), Positives = 546/823 (66%), Gaps = 41/823 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+EY+PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--ERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K+RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKDRFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF ++FL T G K+ L+ F++IRT G+IAI L DEL VR + D
Sbjct: 602 IIPIREFGDEEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ +G + R+ V IS R +GV L+RL
Sbjct: 758 ---TGEED--IMLITVAGVIIRMPVDQISQMGRNTQGVRLIRL 795
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 578 IIP-----NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
IIP ++E L +++G KR ++F N++ G I S LR D + +
Sbjct: 602 IIPIREFGDEEFLFFTTKQGISKRTPLSSFANIRTNGLIAIS---LREEDELISVRLTSG 658
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
++ + G++ + RNAAG V+ ++L + +++ + V E D +
Sbjct: 659 DKDIIVGTSNGMLIRFNEQDVRSMGRNAAG---VKAITLGEEDQVVGMEIVEE---DVNV 712
Query: 692 VMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMV 748
+++T NGY K+ ++ + S G+ + + +L V+ T ++ + + + G++
Sbjct: 713 LIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITVAGVI 772
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
I D I + RNT+G +RL D ++A++
Sbjct: 773 IRMPVDQISQMGRNTQGVRLIRLGDEQEVATV 804
>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
Length = 832
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/810 (44%), Positives = 529/810 (65%), Gaps = 35/810 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDG+KPVHRRIL+AM ELG++ KP KK AR+VGEV+G
Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDKPHKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+S+VRMAQDFS+RY L+ GHGNFGSID D AAAMRYTE RL ++ ML
Sbjct: 77 KYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI+++T++F PN+D + EP +LPAR P LL+NG SGIAVGMATNIPPHNLGE++D +
Sbjct: 137 -RDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATNIPPHNLGEVIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+I NP+ T EL+EY+ GPDFPT G I+G GI AYRTGRG +T+R K +E ++K
Sbjct: 196 QAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVTMRAKATIEENNNK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ EIPYQ NK+ LVEKIAELV +K +DGI+D+RDESDR+GMRIVIEL+R +P
Sbjct: 256 AR---IVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMRIVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+LY+ TA+QS+F NM+ I++ +PK + L++VL +L+ + V+ RR F+L +
Sbjct: 313 NVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVIRRRTEFELRKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ + LD+LD VI ++R + + A L + F LS++QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFGLSQEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E + L+ +I +L E+L++ +LQ+I E+ E+K RFS R + + +
Sbjct: 433 GLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKERFSDERRTEITVGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +E+++ I+ GY+KR+ NT+ Q RG G + D + V +
Sbjct: 493 ILDE-DLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G Y +AY+IPE +R A GTP++ ++ + GE I ++IPV F D FL
Sbjct: 552 HHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVENFDSDNFL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T G +KK L + +IR G+IAI L D L V+ + + + GM I
Sbjct: 612 FFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + L D D++ MD++ L +L
Sbjct: 672 KESDVRSMGRSATGVKGITLDDDDEVIGMDVVDRELD---------------------IL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQVVL 870
V+ G+GKR P S +R G+ + ++ + A+ VV +S+E +++
Sbjct: 711 IVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVV--------KSEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ SGT+ R + IS RYA+GV L+ +
Sbjct: 763 ITSSGTIIRTSMEGISTMGRYAQGVKLINI 792
>gi|158319066|ref|YP_001511573.1| DNA gyrase subunit A [Alkaliphilus oremlandii OhILAs]
gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
Length = 819
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/833 (44%), Positives = 543/833 (65%), Gaps = 32/833 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP+ + +EM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M ELG++ KP KK A
Sbjct: 8 IVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD AVYD++VR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE RL
Sbjct: 68 RIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEARL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ M+ DI++DTV++ PNFDES KEPS+LP++ P LL+NG++GIAVGMATNIPPHN
Sbjct: 128 SKMAMEMI-RDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + LI N EA +++L+E++ GPDFPT IMG GI +AY TGRGRI VR K
Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKVRAKA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + R +II EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR GMRIVI
Sbjct: 247 SIE--EVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+ ++V+N LY+ T L+ +F M+ I++G+PK + LKEVL +LD + ++ RR
Sbjct: 305 ELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIITRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L++ +ER HI+EG+ + +DNLD VI+++R + + A L + F LSEKQA AIL
Sbjct: 365 TQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L++LT LE +K +E + L++ I +E+L++ + +L +I+ E+IE+K ++ R +
Sbjct: 425 DMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDERRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ A G+++ D+I +E+++ ++ GY+KR+ +T+ Q RG G + R D +
Sbjct: 485 EITRA-IGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAALTTREEDFV 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ I +HD++L+F++ G VY Y+IPE R A GT +V ++ LS E + + IPV
Sbjct: 544 ENLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNETVAATIPVG 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
++LV+ T NG IKK L+ F S R +G+IAI + DEL V+ D + + +
Sbjct: 604 RQFDSKYLVLATKNGIIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILIT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
GM I +R + R+ G + L D + SM+I+ +KD
Sbjct: 664 AQGMSIRFKEQDVRDMGRSAMGVKGINLSPKDHVVSMEIVEE--NKD------------- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
LL +SE G GKR S +R G+ Y + + +VG + D
Sbjct: 709 ------LLVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVTGK----TGPLVGAKIVTD-- 756
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++V+L++ GTV R+ V +IS R +GV LMR+E I + +L++ TE
Sbjct: 757 -EDEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTE 808
>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
Length = 824
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 10 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 70 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 130 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 189 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 249 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 307 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 367 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 427 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 487 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 543
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 544 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 602
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 603 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 662
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 663 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 712
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 713 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 759 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 797
>gi|357058363|ref|ZP_09119217.1| DNA gyrase subunit A [Selenomonas infelix ATCC 43532]
gi|355374216|gb|EHG21517.1| DNA gyrase subunit A [Selenomonas infelix ATCC 43532]
Length = 815
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/831 (43%), Positives = 547/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDTSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NPE T++EL+ + GPDFPT GLI+G I AY TGRG + +R +
Sbjct: 188 NMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVVKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DG++D+RDESDRSGMRIV
Sbjct: 248 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M +K++L ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGIIMLALVDGQPVIMNIKQMLGHYISHQETVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D F L+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFNLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + ++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKNELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I +
Sbjct: 545 VSDLLITTTHHDILFFTNRGRAFVLKAYEIPESGRQAKGTAIVNLLAVESDERITAVIQI 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 KEFRADRFLFLATKRGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G I D +RS+ R TRG + L DGD++ +MDI+
Sbjct: 665 TRHGKAIAFPEDGVRSMGRVTRGVRGINLSDGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+E G+GKR +R GLI K + D+ VVG + +
Sbjct: 706 --KQGSEVLTVTEGGYGKRTTAEEYRTQTRGGKGLINMKVT--DKTGP--VVGIRVVRE- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM L S ++ S + ++
Sbjct: 759 --NQELMLITTDGLVIRTMVDEISLISRNTQGVKLMTLGESDRVASMATMN 807
>gi|336477182|ref|YP_004616323.1| DNA gyrase subunit A [Methanosalsum zhilinae DSM 4017]
gi|335930563|gb|AEH61104.1| DNA gyrase, A subunit [Methanosalsum zhilinae DSM 4017]
Length = 822
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/848 (43%), Positives = 550/848 (64%), Gaps = 32/848 (3%)
Query: 65 EERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRI 124
E++N S + + R+V + + +EM SYI Y+MSV++GRALPD RDGLKPVHRRI
Sbjct: 3 EDKNIQDSQSPEISDQGERVVSIFIQDEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRI 62
Query: 125 LFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGN 184
LF+M E G++ KP+KK AR+VG+VLGK+HPHGD AVYDS+VRM QDFSLRYPLI G GN
Sbjct: 63 LFSMKEAGITYDKPYKKSARIVGDVLGKYHPHGDMAVYDSIVRMVQDFSLRYPLIDGQGN 122
Query: 185 FGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLL 244
FGSID D AAAMRYTE R++ +SE ML DID++TVNF PN+D S EP +LPA+LP LL
Sbjct: 123 FGSIDGDSAAAMRYTEIRMDRISEEML-EDIDKETVNFRPNYDGSLSEPVVLPAKLPNLL 181
Query: 245 LNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNL 304
+NG++GIAVGMATN+ PHN+GE++D + I NPE L++L+E + GPDFPT G+IMG
Sbjct: 182 INGSTGIAVGMATNMAPHNIGEVIDAILMTIENPEVPLRDLMEVIKGPDFPTAGMIMGTQ 241
Query: 305 GILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTL 364
GILDAYRTGRGRI VR +E + + R +I+ E+PYQ NK+ L+E IA LV K +
Sbjct: 242 GILDAYRTGRGRIKVRAVASIEEMKADKHR--IIVTELPYQVNKAKLIENIALLVREKKI 299
Query: 365 DGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMG 424
GISD+RDESDR G+RIVIEL R +P+I++N LY+ T +Q++F + ++D PK +
Sbjct: 300 AGISDLRDESDRDGIRIVIELSRNTNPNIILNQLYKHTQMQTTFGIINLALVDDVPKVLN 359
Query: 425 LKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA 484
LK++L+ +LD R V+ +R++F+L++ ++R HI+ G+ + LD++D VI ++R + + A
Sbjct: 360 LKDILKIYLDHRIDVIHKRSQFELNKAEKRAHILNGLKIALDHIDEVISLIRASSTTEEA 419
Query: 485 SAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQ 544
L ++F L E QA AIL+M L+RLT LERKK +E L+ I KL+E+L S +
Sbjct: 420 KLGLIEKFPLDEIQAKAILEMRLQRLTGLERKKIDEEYDELLNTIKKLQEILGSLDKKYE 479
Query: 545 LIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNL 604
+I QE+I LK +++ R ++++ + S +++D D++P +++++ I+ GY+KR+ +T++
Sbjct: 480 IIHQELIALKEQYADKRKTVIKRS-SYEIEDEDLVPEEDVVVTITHDGYIKRLPQDTYSS 538
Query: 605 QNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPL 664
Q+RG G + + D + + V HD +L+F+++G VY + Y+IP+ +R++ G +
Sbjct: 539 QHRGGRGILGIETKEGDFVENIFVASTHDDLLFFTNKGRVYCQKVYEIPQASRHSRGKAI 598
Query: 665 VQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPG 724
V +L L D E IT++IP+SEF+ D +L+M T G +KK L+ FS++R TGIIAI L
Sbjct: 599 VNLLDLKD-EFITAMIPISEFSEDSYLLMATKQGTVKKCQLSEFSNLRKTGIIAISLNDE 657
Query: 725 DELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
DEL V + V + S+NG I S +R++ R RG M+L D + S+D++
Sbjct: 658 DELSNVILTDSSRDVILVSRNGKAIRFSESDVRTMGRTARGVRGMKLDGDDMVVSIDVV- 716
Query: 785 AALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844
ED + LL V+E G GKR +R + G++ S
Sbjct: 717 ----------DEDDST---------LLTVTEKGFGKRTRFGEYRTMRRGGRGVMTIVTSI 757
Query: 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
+ VV +D +++V+L + G + RI V+DI IQ R +GV +M +
Sbjct: 758 RNG----HVVNIKSVKD---NDEVMLTTSEGIIIRIPVKDIRIQGRNTQGVKIMHVRSDD 810
Query: 905 KIQSASLI 912
K+ + I
Sbjct: 811 KVVDVAKI 818
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 582 DEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
D LL +++G VK+ + + F NL+ G I S L D +S+ I+ + V+ S
Sbjct: 621 DSYLLMATKQGTVKKCQLSEFSNLRKTGIIAIS---LNDEDELSNVILTDSSRDVILVSR 677
Query: 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYI 700
G + R A G V+ + L + + SI V E D L+ +T G+
Sbjct: 678 NGKAIRFSESDVRTMGRTARG---VRGMKLDGDDMVVSIDVVDE--DDSTLLTVTEKGFG 732
Query: 701 KKVSLNLFSSIRTTG---IIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIR 757
K+ + ++R G + + + + ++ ++D V + + G++I IR
Sbjct: 733 KRTRFGEYRTMRRGGRGVMTIVTSIRNGHVVNIKSVKDNDEVMLTTSEGIIIRIPVKDIR 792
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPA 785
RNT+G M ++ DK+ + I A
Sbjct: 793 IQGRNTQGVKIMHVRSDDKVVDVAKIRA 820
>gi|408355370|ref|YP_006843901.1| DNA gyrase subunit A [Amphibacillus xylanus NBRC 15112]
gi|407726141|dbj|BAM46139.1| DNA gyrase subunit A [Amphibacillus xylanus NBRC 15112]
Length = 820
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/843 (42%), Positives = 553/843 (65%), Gaps = 32/843 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N P+I + + +EM S++ Y+MSV++ RA+PDVRDGLKPV RRIL++M++LG+ + K
Sbjct: 4 NQRPQIQEISIGKEMRTSFLDYAMSVIVSRAIPDVRDGLKPVQRRILYSMNDLGMHADKA 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD+AVY+++VRMAQDFS R L+ GHGNFGS+D DPAAAMRY
Sbjct: 64 YKKSARIVGDVIGKYHPHGDSAVYEAMVRMAQDFSYRNMLVDGHGNFGSVDGDPAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S LL DI+++TV++ N+D S++EP +LPAR P LL+NG SGIAVGMATN
Sbjct: 124 TEARMSKIS-MELLRDINKNTVDYQDNYDGSEREPKVLPARFPNLLVNGTSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
IPPH LGE +D + A+ NP+ T+ EL+E Y+ GPDFPTGG+I+G GI A+ TGRG I
Sbjct: 183 IPPHQLGETIDAILAVSENPDITIDELMENYIYGPDFPTGGIILGRSGIRKAFETGRGSI 242
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
T+R KT +E + K+ + +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+
Sbjct: 243 TIRAKTRIE--EQKNGKSTIIVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRN 300
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIV+EL+R A+P++++N+LY+ TALQSSF NM+ +++GQPK + LKE L +LD +
Sbjct: 301 GMRIVMELRRDANPNVLLNNLYKQTALQSSFGINMLALVNGQPKVLSLKETLTHYLDHQK 360
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR +++L++ ++R HI+EG+ + LD +D +I ++R + + A L FKL+EK
Sbjct: 361 DVIRRRTQYELNKAEQRAHILEGLRIALDYIDEIIALIRASNTTDIAREGLIQNFKLTEK 420
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+E I +L+ +L + +L +I +E+IE+K ++
Sbjct: 421 QAQAILDMRLQRLTGLERQKIEEEYEKLLELIKELKSVLENENKLLDIIREELIEIKEKY 480
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + +D D+IP +++++ ++ +GY+KR+ +T+ QNRG G
Sbjct: 481 NDERRTEIVMGGVDFFEDEDLIPEEDIVVCLTHRGYIKRLPSSTYRTQNRGGRGVQGMST 540
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F+++G VY + Y+IPE R A G P++ IL + E +
Sbjct: 541 HDDDFVEHLVTASTHDTILFFTNKGKVYRLKGYQIPEYGRAAKGLPVINILEIEKDEWVN 600
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I EF D+FL T +G K+ SLN F++IR GIIA+ L DEL V+
Sbjct: 601 TVISAPEFDEDKFLFFTTKHGISKRTSLNQFANIRRNGIIALTLRDEDELISVQLTDGSK 660
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A++NG +I IRS+ R+ G + L+D D++ SM+I+
Sbjct: 661 DIMIATRNGYLIRFDEQQIRSMGRSAAGVKGISLRDDDEVVSMEIV-------------- 706
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
++L V+E+G+GKR P S +R +NR G + + D+ +V V
Sbjct: 707 -------EENDYILNVTENGYGKRTPESDYRM--INRGGKGVFTANVTDKTGSVVAV--- 754
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+ DE +++++ SG + R + ISI R +GV L+RL+ K+ + + + E
Sbjct: 755 --KSVNGDEDLMIMTDSGVLIRTPIEAISITGRNTQGVRLIRLQEDQKVATVACVEKEES 812
Query: 918 ETD 920
E +
Sbjct: 813 EQE 815
>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
[Ricinus communis]
gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
[Ricinus communis]
Length = 433
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/422 (83%), Positives = 384/422 (90%), Gaps = 1/422 (0%)
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
+L+RKKFV+ESK LMEQI +LEELLSSR NILQLIEQE +ELKN+F++PR S LED+D
Sbjct: 2 LLQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDGS 61
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
QLDDID++PN+EMLLA SEKGYVKRMKP+TFNLQNRGTIGKSVGKLRVNDAMSD IVCRA
Sbjct: 62 QLDDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCRA 121
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
HDHVLYFSD GIVYSARAYKIPEC+R AAGTPLVQILSLSDGERITSIIPVSEF+GDQFL
Sbjct: 122 HDHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFSGDQFL 181
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
+MLT+NGYIKKV LNLFS+IR+TGIIAIQLVPGDELKWVRCCTN+DLVAMAS NGMVILS
Sbjct: 182 LMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLNGMVILS 241
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
SC+ IR+LSRNTRG VAMRLK GDKMASMDIIP A+ KDLER ED SN KG SGPWLL
Sbjct: 242 SCENIRALSRNTRGGVAMRLKGGDKMASMDIIPVAMRKDLERVLEDPRSNSKG-SGPWLL 300
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLV 871
FVSE+G+GKRVPLSSFR PLNRVGLIGYKFSAED+LAAVFVVGF+LAEDGESDEQVVLV
Sbjct: 301 FVSENGYGKRVPLSSFRLSPLNRVGLIGYKFSAEDQLAAVFVVGFTLAEDGESDEQVVLV 360
Query: 872 SQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
SQSGTVNRIKV+DISIQ+R+ARGVILMRLE +GKIQSASLIS E E P+ S+ LA
Sbjct: 361 SQSGTVNRIKVQDISIQSRFARGVILMRLEQAGKIQSASLISTMEAEPKESTPNASEMLA 420
Query: 932 TE 933
TE
Sbjct: 421 TE 422
>gi|422344224|ref|ZP_16425150.1| DNA gyrase subunit A [Selenomonas noxia F0398]
gi|355377543|gb|EHG24760.1| DNA gyrase subunit A [Selenomonas noxia F0398]
Length = 815
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/831 (43%), Positives = 548/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+FV N+D S+KEPS+LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NPE T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 188 NMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + S R +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 248 AHIETMSSGKPR--ILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M LK++L ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEEEYQEVLKMIEELKGILADRMKVLAIIKDELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG V+ +AY+IPE R A GT ++ +L++ ERIT++I V
Sbjct: 545 VSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 REFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLKAVNLDEEDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +RS+ R TRG + L DGD++ +MDI+
Sbjct: 665 TRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR +R GLI K + + VVG + +
Sbjct: 706 --KSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTEK----TGPVVGIRVVRE- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
D++++L++ G V R V +IS +R +GV LM + + ++ S + ++
Sbjct: 759 --DQELMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMATMN 807
>gi|354559349|ref|ZP_08978599.1| DNA gyrase, A subunit [Desulfitobacterium metallireducens DSM
15288]
gi|353542938|gb|EHC12398.1| DNA gyrase, A subunit [Desulfitobacterium metallireducens DSM
15288]
Length = 825
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 548/834 (65%), Gaps = 35/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+E+ E+ S+I YSMSV+ RALPDVRDGLKPVHRRIL+ HELG++ KP+ K
Sbjct: 9 KVLPIEISGELKKSFIDYSMSVIASRALPDVRDGLKPVHRRILYTFHELGMTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTECR
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSSRYPLVDGHGNFGSVDGDSAAAMRYTECR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
++ ++ +LADID+DTVNFVPN+DE Q+EPS+LP++ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MDKMA-TFMLADIDKDTVNFVPNYDEKQEEPSVLPSKFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D A I NP+ T++EL+EY+ GPD PTG +IMG GI AY TGRG R K
Sbjct: 188 NLTEVIDGTIAQIDNPDITIKELMEYIKGPDLPTGAMIMGTEGIYQAYTTGRGIFKTRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ KS +M ++I EIP+ NK+ LVEKIAELV K ++GI+D+RDESDRSGMRIV
Sbjct: 248 AHIEHME-KSGKMRILITEIPFMVNKARLVEKIAELVREKKIEGITDLRDESDRSGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R P I++N LY+ T L+ SF NM+ ++DG+PK + LKE++ F++ + V+ R
Sbjct: 307 IELRRDVVPQIILNQLYKHTQLEESFGMNMLALVDGRPKLLTLKEMIYYFIEHQRDVITR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HI+EG+ + LD++D VI+I+R + + A L F LSEKQ+ AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDHIDEVIQIIRTSADETDAKNNLMARFGLSEKQSQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ L++ I L +L+S K + ++I+ E+ E+K++F R
Sbjct: 427 VDMRLKRLTGLEREKIENQLAELLKTIEYLRAVLASEKMVDEIIKTELNEIKDKFGDERR 486
Query: 563 SMLE-DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + D + Q++ D+I ++++++ ++ +GY+KR+ N++ Q RG G + R D
Sbjct: 487 TQISIDVSNMQIE--DLIADEDVVITVTHRGYIKRIPLNSYKSQRRGGKGVNGMATREED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSII 680
+ + H ++L+F+ RG VY +A++IPE ++ A G +V IL+++ E IT+I+
Sbjct: 545 FVEHLFITSTHQYILFFTSRGKVYRLKAHEIPEASKTAKGIAIVNILNINPSEEEITAIL 604
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
+ ++ D L T +G +KK +LN + S R G+IA+ L GDEL VR +D +
Sbjct: 605 AIKAYSEDFCLFTATKHGIVKKSALNEYDSQRKDGLIALTLDEGDELIGVRLTREEDHIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
MA++NG+ I +C +R + R RG + L + D + MD+I ++D
Sbjct: 665 MATKNGLSICFNCSDVRQMGRTARGVKGINLTEDDSVVGMDVI----YED---------- 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
G LL ++E+G KR +S +R G+I K + + L + VV
Sbjct: 711 ------GSELLTMTENGLSKRTDVSEYRVQGRGGKGIIAMKLNEKTGSLIGIKVV----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ ++Q++++++ G V R V IS Q R A+GV+ MR S + A +++
Sbjct: 760 ---KPEDQLMIITEDGIVIRQDVSGISKQGRSAQGVMAMRTRESRVVAIAKVVN 810
>gi|392961609|ref|ZP_10327065.1| DNA gyrase subunit A [Pelosinus fermentans DSM 17108]
gi|421055523|ref|ZP_15518486.1| DNA gyrase, A subunit [Pelosinus fermentans B4]
gi|421059924|ref|ZP_15522462.1| DNA gyrase subunit A [Pelosinus fermentans B3]
gi|421065492|ref|ZP_15527235.1| DNA gyrase subunit A [Pelosinus fermentans A12]
gi|421072405|ref|ZP_15533516.1| DNA gyrase, A subunit [Pelosinus fermentans A11]
gi|392439906|gb|EIW17607.1| DNA gyrase, A subunit [Pelosinus fermentans B4]
gi|392446042|gb|EIW23344.1| DNA gyrase, A subunit [Pelosinus fermentans A11]
gi|392453617|gb|EIW30489.1| DNA gyrase subunit A [Pelosinus fermentans DSM 17108]
gi|392458079|gb|EIW34662.1| DNA gyrase subunit A [Pelosinus fermentans B3]
gi|392458778|gb|EIW35269.1| DNA gyrase subunit A [Pelosinus fermentans A12]
Length = 811
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/839 (43%), Positives = 548/839 (65%), Gaps = 35/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV + +EM GSYI Y+MSV+ RALPDVRDGLKPVHRRIL+AMHE G++S KP+KK
Sbjct: 7 KVLPVSIEQEMKGSYIDYAMSVITMRALPDVRDGLKPVHRRILYAMHEAGMASNKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VY ++VR+AQDFS RY ++ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYQAIVRLAQDFSTRYLMVDGHGNFGSVDGDSAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++EAM+ ADI++DTV+F PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MSRIAEAMV-ADIEKDTVDFTPNYDESMQEPAVLPAKVPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L +I N E T+ EL+ + GPDFPT GLI+G GI AY TGRG + +R +
Sbjct: 186 NLREVIDALIMMIDNAEVTIPELMTAVKGPDFPTRGLILGKEGIYSAYTTGRGVVKMRAQ 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
V+ + + R +I+ EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMRIV
Sbjct: 246 ARVDKMANGKPR--IIVTEIPYQVNKATLIEKIADLVRDKVIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + +++N LY+ T LQ +F M+ +++G+P+ + L+E+L +L+ + V+ R
Sbjct: 304 IELRRDINADVILNQLYKHTQLQDTFGIIMLALVEGRPRVLNLREMLYYYLEHQKIVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L++ K R HI+EG+ + LD++D VI +R++ + A AAL + F LS+KQA AI
Sbjct: 364 RTTYELAKAKARAHILEGLKIALDHIDAVITAIRQSKTVDVARAALIEGFDLSDKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E K L+E I LE +L+ + +L +I++E+++++ RF R
Sbjct: 424 LDLRLQRLTGLEREKIENEYKDLLETIEWLESVLADDQKVLNIIKEELMDVRKRFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ D D +L D+I ++++L ++ YVKR+ +T+ Q RG G + + D
Sbjct: 484 TIITD-DLSKLAIEDLIAEEDIVLTLTRSSYVKRLPVDTYRNQKRGGRGVAGMGTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H ++L+F++RG VY + Y+IPE +R + GT ++ +L L ERIT++IP+
Sbjct: 543 VEHLFVTTTHHNILFFTNRGRVYRLKGYEIPEASRTSKGTSIINLLPLEGQERITAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F ++L M T G +KK L F + R TG+IAI L D+L V+ + V M
Sbjct: 603 KAFTNTRYLFMATAKGIVKKTELMDFDTARKTGLIAITLDEDDDLIGVKLTNGEQYVLMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G+ I +R + R RG +RL +GD + MD L ++ E
Sbjct: 663 TQDGLAIYFPETDVRDMGRTARGVRGIRLHEGDSVVGMD----TLKQEGE---------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G+GKR P+ S+R G+I K + + VVG + G
Sbjct: 709 -------VLTVTAEGYGKRTPVDSYRNQKRGGKGVINTKVTEK----TGQVVGIKVVRPG 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ +++L+S G V RI + IS+ +R +GV LM+ +G+ ++ E + D+
Sbjct: 758 Q---ELMLISSEGIVIRIDIDTISVISRNTQGVKLMK---TGENDKVVALAAVEKKADI 810
>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
Length = 823
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/824 (43%), Positives = 545/824 (66%), Gaps = 41/824 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+++G+GKR P+ +R GL + ++ +L AV V
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L++ +G + R+ V IS R +GV L+RLE
Sbjct: 758 ---TGEED--IMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLE 796
>gi|410656648|ref|YP_006909019.1| DNA gyrase subunit A [Dehalobacter sp. DCA]
gi|410659626|ref|YP_006911997.1| DNA gyrase subunit A [Dehalobacter sp. CF]
gi|409019003|gb|AFV01034.1| DNA gyrase subunit A [Dehalobacter sp. DCA]
gi|409021982|gb|AFV04012.1| DNA gyrase subunit A [Dehalobacter sp. CF]
Length = 822
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/845 (43%), Positives = 555/845 (65%), Gaps = 39/845 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +++P+E+ +E+ S+I YSMSV++ RALPDVRDGLKPVHRRIL+AM+ELG++ K +
Sbjct: 7 SGKVLPIEISDELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTPNKGYS 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+ +GK+HPHGD+++YD+ VRMAQ+FS RYPLI GHGNFGSID D AAAMRYTE
Sbjct: 67 KSARLVGDCMGKYHPHGDSSIYDASVRMAQNFSSRYPLIDGHGNFGSIDGDSAAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
++ L+ ML ADID+DTVNF PN+DE +KEP +LPA+ P LL+NG+SGIAVGMATNIP
Sbjct: 127 MKMAPLATYML-ADIDKDTVNFSPNYDEREKEPDVLPAKFPNLLVNGSSGIAVGMATNIP 185
Query: 261 PHNLGELVDVLCALIHN-------PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
PHNLGE++D + L+ + P +++L++++ GPDFPTG IMG GI+ AY TG
Sbjct: 186 PHNLGEVIDGVVYLMDSEDNEDGAPRPGIRDLMKFIKGPDFPTGAQIMGTEGIISAYTTG 245
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG I VR K +E ++ K+ +M +++ EIPY NKS L+EKIAELV+ K ++GI+D+RDE
Sbjct: 246 RGSIKVRAKANIEKIE-KNGKMQIVVTEIPYVVNKSRLIEKIAELVQEKKIEGITDLRDE 304
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
+ G+RIVIEL+R P +++N LY+ T ++ SF NM+ ++D PK + L+E+L+ F+
Sbjct: 305 TTMKGIRIVIELRRDVTPQVILNQLYKHTQMEDSFGINMLALVDNTPKVLNLQEILEYFI 364
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ V+ RR+RF+L + ++ HIVEG+ LD +D VI I+R + + A A L F
Sbjct: 365 KHQKEVIVRRSRFELKKAEDEAHIVEGLRKALDYIDEVIEIIRSSKDDDIAKAKLILRFD 424
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
S++QA AI+DM L+RLT LER+K + + LM++I L +L+S K + +I+ E+ E+
Sbjct: 425 FSDRQAQAIMDMRLKRLTGLEREKLDAQYQRLMDEIAYLTAVLNSDKMVRGIIKTELKEI 484
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
+++F+ PR S + D+ +++ D+I ++++++ ++ +GY+KR+ NT++ Q RG G +
Sbjct: 485 RDKFADPRRSEIT-FDATKMEIEDLIADEDVVITVTHRGYIKRLPLNTYHSQRRGGRGVN 543
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
ND + + H H+L+F+ RG VY RA++IPE +R A GT +V +LSL+
Sbjct: 544 GMSTGENDFVESLFIASTHHHILFFTSRGKVYRLRAHEIPEASRTAKGTAIVNLLSLAQD 603
Query: 674 ERITSIIPVSEFAGDQF-LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRC 732
E++T+ I V EF DQF L+ T NG +KK SL + + R+ G+IA+ L DEL VR
Sbjct: 604 EKVTATIAVKEFK-DQFNLLTATKNGIVKKTSLQDYDTKRSDGLIALTLDENDELIGVRL 662
Query: 733 CTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE 792
DD V +A++ G+ I S + +R++ R RG + L+ D + +MD++
Sbjct: 663 TKQDDDVVIATRLGLAIRFSEEDVRAMGRTARGVRGISLRKDDYVIAMDVVD-------- 714
Query: 793 RTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAV 851
K +S LL V+E+G KR LS FR G+IG++ +++ LAAV
Sbjct: 715 ----------KTASDLELLTVTENGFAKRSELSEFRIQGRGGKGIIGHRVTSKTGPLAAV 764
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
VV +D+++++++ G V R +V IS+Q R A+GV MR S + A
Sbjct: 765 KVV--------TADQELMVITDEGIVIRQEVSGISVQGRSAQGVTAMRTGESKVVAVAKF 816
Query: 912 ISVTE 916
+S E
Sbjct: 817 VSKEE 821
>gi|414154087|ref|ZP_11410407.1| DNA gyrase subunit A [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454272|emb|CCO08311.1| DNA gyrase subunit A [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 812
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/817 (41%), Positives = 538/817 (65%), Gaps = 31/817 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P++++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+++HELGL+ KP++K
Sbjct: 7 KVIPLDINNEMKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILYSLHELGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VG+V+ FHPHGD A+YD++VR+AQDF+ RYPLI+GHGNFGS+D DP AAMRYTE R
Sbjct: 67 AGIVGKVMQDFHPHGDMAIYDAMVRLAQDFASRYPLIQGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID++TV+F PN+D +EP +LP+++P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MAKITMEML-ADIDKETVDFAPNYDNRTEEPVILPSKIPNLLINGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + +I NP+ T +L++ + GPDFPTG IMG GI AYRTGRG I +R +
Sbjct: 186 NLGEVIDGILMMIDNPQVTSDQLMKVIKGPDFPTGAKIMGREGIRQAYRTGRGTIKIRAQ 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R +I+ EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR GMRIV
Sbjct: 246 ATIE--QKANGRPVIIVHEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRRGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A+P++++N LY+ T +Q SF M+ +++ +PK + L +++ +L+ + V+ R
Sbjct: 304 IELKKDANPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQLIFHYLEHQKDVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L + + R HIVEG+ + L NLD VI+ +RE+ + A L ++F L++ QA+AI
Sbjct: 364 RTKYELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEAKKGLVNKFNLTQVQAEAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
++M LR LT LE +K E K L+++I L +L+ K +L +I+ E++++K +F+ PR
Sbjct: 424 VEMRLRSLTALEVEKLEAEYKELLQKIDYLRSVLADEKKVLGIIKDELLQVKEKFADPRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ + +G+ D D+I ++M++ ++ +GY+KR+ +T+ Q RG G + + D
Sbjct: 484 TVITNEAAGEFDIEDLIDEEDMVVTLTNQGYIKRISLDTYRSQRRGGKGITAMGTKEEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G VY + +++PE +R A GTP++ +L+ E ++++IP+
Sbjct: 544 VRHLFIASTHHFLLFFTNKGKVYRLKVHEVPEASRTAKGTPIINLLNFDHDEYVSTVIPI 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EFA D FL M T NG +KK L ++S R GIIAI L D+L V + + +
Sbjct: 604 KEFAEDAFLFMATKNGTVKKTPLTEYNSSRRDGIIAITLDQEDKLVAVELTYGKEEIILG 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q G I S D +R + R RG + L D D + +MD++
Sbjct: 664 TQEGTAIRFSEDDVRPMGRAARGVKGITLSDNDFVVNMDVV------------------- 704
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G LL V+ +G+GKR PLS +R G+I K + + VVG + ++
Sbjct: 705 --KEGADLLTVTANGYGKRTPLSEYRSQSRGGKGIINIKTTKRNGP----VVGVQVVKE- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+++++++S G + R+ RD+S +R +GV LM+
Sbjct: 758 --EDEIMMISAEGIIIRLPARDVSSMSRNTQGVTLMK 792
>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
ATCC 43541]
gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
ATCC 43541]
Length = 815
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/831 (43%), Positives = 547/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+FV N+D S+KEPS+LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NPE T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 188 NMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + S R +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 248 AHIETMSSGKPR--ILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M LK++L ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + ++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKDELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG V+ +AY+IPE R A GT ++ +L++ ERIT++I V
Sbjct: 545 VSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 REFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLKAVNLDEEDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +RS+ R TRG + L DGD++ +MDI+
Sbjct: 665 TRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR +R GLI K + + VVG + +
Sbjct: 706 --KSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTEK----TGPVVGIRVVRE- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
D++++L++ G V R V +IS +R +GV LM + + ++ S + ++
Sbjct: 759 --DQELMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMATMN 807
>gi|374578728|ref|ZP_09651822.1| DNA gyrase, A subunit [Desulfosporosinus youngiae DSM 17734]
gi|374414810|gb|EHQ87245.1| DNA gyrase, A subunit [Desulfosporosinus youngiae DSM 17734]
Length = 826
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/818 (43%), Positives = 543/818 (66%), Gaps = 33/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+E+ EEM S+I YSMSV++ RALPDVRDGLKPVHRRIL+ +HELGL+ KP+ K
Sbjct: 9 KVLPIEIAEEMRKSFIDYSMSVIVSRALPDVRDGLKPVHRRILYTLHELGLTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDF+ RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFASRYPLVDGHGNFGSIDGDSAAAMRYTELR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ ML ADID+DTV+F N+DE Q+EP++LP++ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MAKLATYML-ADIDKDTVDFDLNYDEKQEEPTVLPSKFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ AL+ NPE ++ EL+ Y+ GPDFPTGG IMG+ GI+ AY+TGRG I +R K
Sbjct: 188 NLSEVIEATIALMTNPELSIDELMNYVKGPDFPTGGTIMGHEGIISAYKTGRGSIKIRSK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T++E ++ KS + +I+ EIP+ NK+ ++EKIA+LV +K LDGI+D+RDESDRSGMRIV
Sbjct: 248 TQIEPME-KSGKNRIIVTEIPFMVNKARMIEKIADLVRDKKLDGITDLRDESDRSGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P I++N LY+ T L+ +F NM+ +++GQP+ + LK+++ F++ + V+ R
Sbjct: 307 IELRRDVNPKIILNQLYKHTQLEDTFGVNMLALVNGQPRTLTLKDMIHYFIEHQKDVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + HI+EG+ + LD++D VI +R + STA L F LSEKQA AI
Sbjct: 367 RTKFELNKAEAEAHIIEGLRIALDHIDEVIETIRSSKDESTARENLISRFGLSEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ + LM I L+ +L+S ++ +++ E+ E+ +F R
Sbjct: 427 VDMRLKRLTGLEREKLENQYQELMNTIAYLKSVLASEAMVIGIVKTELEEINRKFGDARR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+M+ D ++D D+I +++++ ++ GY+KR+ NT+ QNRG G + D
Sbjct: 487 TMVT-IDVSRMDVEDLIAVEDVVVTVTHYGYIKRLPLNTYKSQNRGGKGVHGMATKEQDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ H ++L+F+ +G VY +AY+IPE +R GT ++ +L+L + E IT+++ +
Sbjct: 546 VEHLFTTTTHHYILFFTSQGKVYRLKAYEIPEASRTGKGTAVINLLNLGEHEMITAVMAI 605
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++ D FL+ T G +KK +L + S R G+IA+ L GDEL V+ D + +A
Sbjct: 606 KDYSPDFFLITATKRGIMKKTALQEYDSSRKDGLIALTLDEGDELIGVKLTQGLDDILLA 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G+ I +R + R RG ++L++ D + MD+I
Sbjct: 666 TKHGIAIRFPESDVRYMGRTARGVKGIKLEENDVVVGMDVI------------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
G+ G LL +SE+G KR L FR G+I K +A+ L + VV
Sbjct: 707 -GNEGE-LLTMSENGFAKRTDLKEFRVQGRGGRGVIVMKLNAKTGTLVGIKVV------- 757
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ ++++++++ +G + RI V IS Q R A+GV+ MR
Sbjct: 758 -QVEDELMVITNNGIMLRIPVSSISNQGRSAQGVLAMR 794
>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
Length = 818
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/822 (42%), Positives = 536/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ +++P++++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+++HELGL+ K
Sbjct: 3 SLTGKVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKS 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K A +VG+V+ FHPHGD+A+YD++VR+AQDF+ RYPLI+GHGNFGSID DP AAMRY
Sbjct: 63 YRKSAGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML ADID++TV+F PN+D +EP++LP+++P LL+NG+SGIAVGMATN
Sbjct: 123 TEARMAKITLEML-ADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHN+GE++D + +I +P T +L++ + GPDFPTG IMG GI AYRTGRG +
Sbjct: 182 IPPHNMGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVK 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R +T +E + R +I+ EIPYQ NK+ L+EKIAELV++K ++GISD+RDESDR G
Sbjct: 242 MRAQTTIET--KANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELK+ ++P++++N LY+ T +Q SF M+ +++ +PK + L +V+ +L+ +
Sbjct: 300 MRIVIELKKDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKD 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR R++L + + R HIVEG+ + L NLD VI+ +RE+ + A L D+F L+E Q
Sbjct: 360 VITRRTRYELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDKFNLTEIQ 419
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AI++M LR LT LE +K E K L+E+I L +L+ + +L +I E++ +K +F+
Sbjct: 420 AEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADEQKVLNIIRDELLVVKEKFA 479
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R +++ + +G D D+I ++M++ I+ +GY+KR+ +T+ Q RG G + +
Sbjct: 480 DARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTK 539
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + D + H +L+F+++G VY + Y++PE +R A GTP++ +LS E +T+
Sbjct: 540 EEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTT 599
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ EF +L M T +G +KK +L ++S R G+IAI L D+L V +
Sbjct: 600 VIPIKEFEETAYLFMATKHGIVKKTALTEYNSSRRDGLIAINLDEKDKLVAVELTHGKEE 659
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M +Q G+ I S + +R + R TRG + L D + MD+I
Sbjct: 660 IIMCTQEGIAIRFSEEDVRPMGRVTRGVKGITLSQNDHVVKMDVI--------------- 704
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
G LL V+ +G+GKR P+ +R G+I K + + + V VV
Sbjct: 705 ------KEGASLLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRNGAVTGVLVV--- 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
E DE V+++S G + RI V+D+S R +GV LMR
Sbjct: 756 ----SEEDE-VMMISAEGIIIRINVKDVSSMGRNTQGVTLMR 792
>gi|258513373|ref|YP_003189595.1| DNA gyrase subunit A [Desulfotomaculum acetoxidans DSM 771]
gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
Length = 811
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/841 (43%), Positives = 542/841 (64%), Gaps = 41/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VP+ L +EM SY+ Y+MSV++GRALPDVRDGLKPVHRRI++AMH LG++ K KKC
Sbjct: 5 KVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKC 64
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEVL K+HPHGD AVYD+LVRMAQ FS+RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 65 AHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAR 124
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PN+DES +EP++LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 125 MTKIATEML-TDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPH 183
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ NPEA + L++ + GPDFPT G IMG GI+ AY TGRG I +R +
Sbjct: 184 NLAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQ 243
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + R +++ EIPYQ NK+ L+EKIAELV +K ++GISD+RDESDR GMRIV
Sbjct: 244 AEIEEMSGGKNR--IVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR P +V+N LY+ T +Q SF M+ ++DG+P + L+++L +L+ + ++ R
Sbjct: 302 IELKRDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HIVEG+ + L NLD VI +R + + A L ++F L+E QA AI
Sbjct: 362 RTTFDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEKFLLTEIQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L+RLT LE +K E + LME+I LE +LS IL +I+ E++E++ +++ R
Sbjct: 422 LEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYADKRR 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ D D+ D D+I ++M++ I+ GY+KR+ +T+ Q RG G S ++ D
Sbjct: 482 TVISDEDTA-FDVEDLIAEEDMVITITRNGYIKRLPLDTYRSQKRGGRGISAMGVKEKDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H ++L+F+++G VY + ++IPE R + GT ++ +L + E++T++IPV
Sbjct: 541 LKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKGTAIINLLFVGTEEKVTTVIPV 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL M T NG +KK SLN F + R GIIA+ L D+L VR + + +
Sbjct: 601 KEFNKDEFLFMCTKNGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRLTNGQEEIIIG 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q G+ I S D +R L R +G + L +GD + MD + R D
Sbjct: 661 TQKGLAIRFSEDDVRKLGRIAKGVRGIGLIEGDFVVGMDTV---------RNEGD----- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLA 859
LL V+++G GK+ P+S +R G+I K S DR + ++ VV
Sbjct: 707 -------LLVVTKNGFGKKTPISEYRLQTRGGKGIINVKIS--DRNGPVVSLLVV----- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+ DE+++++S G + R+KV +IS R +GV LM+L SG S + I+ E
Sbjct: 753 ---KPDEEIMMLSSEGIIIRMKVNEISTTGRATQGVTLMKLS-SG--DSVATIAKVNAEV 806
Query: 920 D 920
D
Sbjct: 807 D 807
>gi|340357106|ref|ZP_08679734.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sporosarcina
newyorkensis 2681]
gi|339618784|gb|EGQ23375.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sporosarcina
newyorkensis 2681]
Length = 836
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/816 (43%), Positives = 538/816 (65%), Gaps = 35/816 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ ++ EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ KP KK AR+V
Sbjct: 12 ININTEMKTSFLNYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITAEKPHKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GDVIGKYHPHGDRAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSRI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ LL DI++DT++F N+DE +KEP +LP R P LL+NG SGIAVGMATNIPPH+LGE
Sbjct: 132 A-MELLRDINKDTIDFQANYDEQEKEPVVLPGRYPNLLVNGTSGIAVGMATNIPPHHLGE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+D + AL N T EL+E MPGPDFPTGG+I+G GI AY TGRG + +RGK E+E
Sbjct: 191 TIDAVLALADNSAITTDELMEIMPGPDFPTGGMILGRSGIRRAYETGRGSLIIRGKAEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ R +I+ EIP+Q NK+ L+EKIAELV +K +DGI+ + DESDR+GMRIVIE++
Sbjct: 251 --QQSNGRETIIVTEIPFQVNKAKLIEKIAELVRDKKIDGITHLADESDRTGMRIVIEVR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A+ ++++N+LY+ TALQ+SF NM+ ++D QPK + LKE+L +L+ + V+ RR +F
Sbjct: 309 RDANANVLLNNLYKQTALQTSFGINMLALVDKQPKVLSLKEILFHYLEHQKVVIRRRTQF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L++ ++R HI+EG+ + LD++DR+I ++R + + + A ++L + F LSE+Q+ AILDM
Sbjct: 369 ELNKAEDRAHILEGLRIALDHIDRIIALIRGSKTTAEAKSSLMETFDLSERQSQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER K E + L+ I +L +L+ + ++++I +E+ E+K RF+ R + +
Sbjct: 429 LQRLTGLERDKIESEYQELLTLIAELRAILADEEKVIEIIREELTEIKERFADERRTEIM 488
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMS 624
S L+D D+IP + +++++ +GY+KR+ NT+ Q RG G+ + + N D +
Sbjct: 489 LGGSEMLEDEDLIPVENSIVSLTHQGYIKRLPANTYRSQKRG--GRGIQGMGTNEDDFVE 546
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ HD +L F+ RG V+ + Y+IPE +R A G P++ ++ GE++T++IP+SE
Sbjct: 547 HLLNTSTHDTILLFTSRGRVFRKKGYEIPEYSRTAKGLPIINLIDFEKGEKVTAMIPISE 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D +L T +G IK+ S+ +++IR G+IA+ L DEL V+ +A+ ++
Sbjct: 607 FREDHYLFFATKHGVIKRTSIMGYANIRANGLIALGLREEDELISVKSTDGTSDIAICTK 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
GM+I + + IR L R G +RL+ D++ MD++
Sbjct: 667 QGMLIRFAEEDIRPLGRTAAGVRGIRLRIDDEVIGMDMV--------------------- 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
G +L V+E G+GKR P S +R GL + DR + + A +GE
Sbjct: 706 DEGDDILVVTEKGYGKRTPESEYRSQSRGGYGLKTMHMT--DRNGEIVAMK---AVNGEE 760
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D ++L++ G + R+ + DISI R +GV L+RL
Sbjct: 761 D--LMLITIHGILIRMSISDISIFGRSTQGVRLIRL 794
>gi|392423466|ref|YP_006464460.1| DNA gyrase subunit A [Desulfosporosinus acidiphilus SJ4]
gi|391353429|gb|AFM39128.1| DNA gyrase subunit A [Desulfosporosinus acidiphilus SJ4]
Length = 822
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/838 (42%), Positives = 548/838 (65%), Gaps = 31/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PVE+ +EM S+I YSMSV++ RALPDVRDGLKPVHRRILF +HELG++ KP+ K
Sbjct: 9 KVLPVEIADEMRKSFIDYSMSVIVSRALPDVRDGLKPVHRRILFTLHELGMTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ + KFHPHGD+++YD++VRM QDF+ RYPLI GHGNFGSID D AAAMRYTE R
Sbjct: 69 ARLVGDCMAKFHPHGDSSIYDAVVRMDQDFASRYPLIDGHGNFGSIDGDSAAAMRYTELR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID+DT++F+PN+DE Q+EP++LPA+ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MAKIATYML-ADIDKDTIDFIPNYDEKQEEPTVLPAKFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D A++ NPE + +L+ Y+ GPDFPTGG IMG GI AY TG+G I +R K
Sbjct: 188 NLNEVIDATVAMLDNPELSSIDLMNYVKGPDFPTGGTIMGYDGIKSAYSTGKGSIKIRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ KS +M +++ EIP+ NK+ L+EKIAELV +K LDGI+D+RDESDRSGM IV
Sbjct: 248 ATIESME-KSGKMRIVVTEIPFLVNKARLIEKIAELVRDKRLDGITDLRDESDRSGMSIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P I++N LY+ T ++ +F N++ +++ QP+ + LK+++ F++ + V+ R
Sbjct: 307 IELRRDVNPQIILNQLYKHTQMEDTFGVNLLALVNNQPRVLTLKDMIHYFIEHQKDVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HIVEG+ + LD++D VI +R + S A L F LSEKQA AI
Sbjct: 367 RTRFELNKAEAEAHIVEGLRIALDHIDEVIETIRSSADESEARNNLSSRFGLSEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER K ++ LM I L+ +L+S ++++I+ E+ E++++F PR
Sbjct: 427 VDMRLKRLTGLERDKLENQYNELMTTISYLKSVLASPSMVIEIIKNELKEIQDKFGDPRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D +++ D+I +E+++ ++ GYVKR+ NT+ QNRG G + D
Sbjct: 487 TSIT-VDVSKMNIEDLIAEEEVVVTVTHYGYVKRLPLNTYKSQNRGGKGVHGMATKEEDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H ++L+F+ +G VY +A++IPE +R GT ++ +LSL E IT+++ +
Sbjct: 546 VEHLFITSTHHYILFFTSQGKVYRLKAHEIPEASRTGKGTAVINLLSLGQNEMITAVMAI 605
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ D FL+ T G +KK +L+ + S R G+IA+ L GDEL V+ + + +A
Sbjct: 606 KEFSPDYFLITATKKGIMKKTALHEYDSSRREGLIALTLDEGDELIGVKLTQGLNDILLA 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I + +R + R RG ++L++ D++ MD+I
Sbjct: 666 TRRGIAIRFPEEEVRYMGRTARGVKGIKLEENDEVVGMDVI------------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G G LL +SE+G KR L FR G+I K +A+ + ++G +
Sbjct: 707 -GDEGE-LLTMSENGFAKRTDLKEFRVQGRGGKGIIVMKLNAKTGM----LIGVKVV--- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
E ++++++++ +G + R++V IS Q R A GV MR + K+ + + +++ E E +
Sbjct: 758 EVEDELMVITNNGIMLRLQVSSISNQGRTAHGVTTMRTDDDDKVVAMAKVAMREDENN 815
>gi|433653752|ref|YP_007297460.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433291941|gb|AGB17763.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 815
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/841 (43%), Positives = 542/841 (64%), Gaps = 35/841 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N R++PV++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ LGL+ KP
Sbjct: 8 NEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKP 67
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK VVGEVLGK+HPHGD AVYD++VRMAQDFS+R L+ GHGNFGSID DPAAAMRY
Sbjct: 68 YKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRY 127
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATN
Sbjct: 128 TEARLSKIAMEML-TDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAVGMATN 186
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + A I NP T +EL++Y+ GPDFPTGGLI+G GI + Y TGRG+I
Sbjct: 187 IPPHNLGEVIDGIIAYIDNPYITTEELMKYIKGPDFPTGGLIVGKDGIRETYETGRGKII 246
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E + +++ ++I E+PY KS LVEKIAELV +K ++GISD+RDESDR+G
Sbjct: 247 VRAKAEIEEHNGRNR---IVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNG 303
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VIELKR +P +V+N LY T +Q +F M+ ++DG PK + L ++++ ++D +
Sbjct: 304 MRVVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVD 363
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR RF+L + +ER HI+EG+ + LD++D VI ++R + + A L D+F LS+KQ
Sbjct: 364 VITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRNSKTELIAKQNLMDKFGLSDKQ 423
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AI+DM L RLT LER+K DE L +I +L+ +L+ K +L++I++E+ E+K++FS
Sbjct: 424 SQAIVDMRLGRLTGLERQKVEDELNELYRKIGELKGILADEKKVLEIIKKELKEIKDKFS 483
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+ R + + A ++D D++ ++ ++ ++ GY+KRM + + Q RG G S R
Sbjct: 484 SERKTHIV-AKEDEMDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKSQKRGGKGISGISTR 542
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + HD +L+F+++G VYS R IPE R A GT +V ++ + E++ +
Sbjct: 543 EDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQIDQDEKVNA 602
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ +++VM T G IKK ++ F I+ +G AI+L GDEL V +
Sbjct: 603 VIPIKNSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDDGDELINVMLTDGNRE 662
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NG I + +R + R RG +A+ L+D D + MD+I
Sbjct: 663 IIIGTANGFCIRFHENNLRPIGRQARGVIAISLRDDDYVVEMDLI--------------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
G +L V+E+G+GKR +R G+I K + + +L ++ V
Sbjct: 708 ------DEGSEILVVTENGYGKRSDAKEYRLQTRAGKGIIATKITKKTGKLVSIMSV--- 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
E DE ++++S +G + R K+ DIS R GV LM+L+ ++ S + I +
Sbjct: 759 ----SEKDE-LMIISANGILIRTKIADISKMHRDTTGVTLMKLDDGDRVVSTAKIDNDDE 813
Query: 918 E 918
E
Sbjct: 814 E 814
>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
gi|156868374|gb|EDO61746.1| DNA gyrase, A subunit [Clostridium leptum DSM 753]
Length = 859
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/830 (43%), Positives = 540/830 (65%), Gaps = 35/830 (4%)
Query: 79 NVSPR--IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
N+ PR ++ V++ +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL++ +E GL+
Sbjct: 19 NMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYEDGLTPD 78
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAM 196
K +KKCA VG VLG++HPHGD +VYD+LVR+AQDFS+ YPL+ GHGNFGS+D DP AA
Sbjct: 79 KAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDGDPPAAY 138
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMA 256
RYTE R+ +S ML DID+DTVNF+ N+D+S+KEP +LP+R P LL+NG++GIAVGMA
Sbjct: 139 RYTEARMSKISTEML-TDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGIAVGMA 197
Query: 257 TNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGR 316
TNIPPHNLGE +D +C LI NP+A L++L+EY+ GPDFPTG +IMG GI AY TGRG+
Sbjct: 198 TNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAAYATGRGK 257
Query: 317 ITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
ITVR E+ ++ K+ R +I+ E+PYQ NK+ L+E IA++V++K ++GIS+I D SDR
Sbjct: 258 ITVRAVAEI--VEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDHSDR 315
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
+GM I I+LKR A P IV+N LY T +Q++F M+ I++G+PK + LKE+LQ ++ F+
Sbjct: 316 NGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQEYIKFQ 375
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSE 496
V+ RR + L + +ER HI+EG+ + LDN+D +I I+R + TA + + + F L +
Sbjct: 376 EEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTERFGLDD 435
Query: 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556
Q +AI+ M L +LT LER+K DE L +I E++L+ + + +++ E++ ++N+
Sbjct: 436 VQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDILAHEERVKAIVKDELMGIRNK 495
Query: 557 FSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
++ R + + A SG++D D+IP +E +L ++ GYVKR K +T+ Q RG G S
Sbjct: 496 YADERKTEIM-AVSGEVDIEDLIPQEECVLTLTNFGYVKRQKMDTYRTQRRGGRGISGMS 554
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
R D ++ V +HD+V++F+ G VY + Y+IPE +R + G + +L ++ E++
Sbjct: 555 RREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIANLLPITAEEKV 614
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
TS+I V EF +++LVM+T NG IK+ L+ ++S R G+IAI+L GDEL WVR
Sbjct: 615 TSMIRVPEFDEEKYLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDEGDELAWVRVTDGS 674
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +A++ GM I +R + R RG A+ L + D + M A L +
Sbjct: 675 NELIVATKKGMAIRFHERDVRLVGRTARGVKAITLGEDDCVVGM----ARLRE------- 723
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G +L VSE+G+G+ P+S +R GL+ Y +AA+ VV
Sbjct: 724 ----------GGKVLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVAAIKVVDL 773
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
D+ V+L+S G + RI+ I AR ++GV +MR+ K+
Sbjct: 774 --------DDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKV 815
>gi|429736547|ref|ZP_19270442.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 138 str. F0429]
gi|429154844|gb|EKX97555.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 138 str. F0429]
Length = 815
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/831 (43%), Positives = 549/831 (66%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NPE T++EL+ + GPDFPT GLI+G I AY TGRG + +R +
Sbjct: 188 NMVEVINGTLLLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVVRMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DG++D+RDESDRSGMRIV
Sbjct: 248 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M +K++L ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGIIMLALVDGQPVIMNIKQMLGHYISHQETVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEEEYQEVLKMIEELKGILADRIKVLAIIKNELIEVRDKYGDARR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I V
Sbjct: 545 VSDLLITTTHHDILFFTNRGRAFVLKAYEIPESGRQAKGTAIVNLLAVESDERITAVIQV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 KEFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I D +RS+ R RG + L DGD++ +MDI+
Sbjct: 665 TRGGKAICFPEDGVRSMGRIARGVRGISLSDGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR +R GLI K + D+ + VVG + +
Sbjct: 706 --KSDSEVLTVTEGGYGKRTTAEEYRTQTRGGKGLINMKVT--DKTGS--VVGIRVVRE- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM L S ++ S + ++
Sbjct: 759 --NQELMLITTDGIVIRTTVDEISLISRNTQGVKLMTLGESDRVASMATMN 807
>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
Length = 821
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/835 (42%), Positives = 552/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K +K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIA-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ N + T+QEL+E++PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +++ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEETPSGKER--ILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ +++N+LY+ TALQ+SF N++ ++DG+PK + LK+ L +LD + V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+E+L++ + +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEIKERFNDK 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+I + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY ++ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 GDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEFGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF +L T +G K+ +L+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVSEFDEKLYLFFTTKHGISKRTTLSQFANIRNNGLIALGLREDDELMAVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ +DS
Sbjct: 661 IIIGTKNGLLIRFPESDVREMGRTAAGVKGITLTDDDIVVGMEIL-----------EDDS 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E+G+GKR P +R GL K + + RL V
Sbjct: 710 H----------VLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRLVTV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALV 806
>gi|401563736|ref|ZP_10804676.1| DNA gyrase, A subunit [Selenomonas sp. FOBRC6]
gi|400189525|gb|EJO23614.1| DNA gyrase, A subunit [Selenomonas sp. FOBRC6]
Length = 815
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/831 (43%), Positives = 547/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDTSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NPE T++EL+ + GPDFPT GLI+G I AY TGRG + +R +
Sbjct: 188 NMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVVKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DG++D+RDESDRSGMRIV
Sbjct: 248 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M +K++L ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGIIMLALVDGQPVIMNIKQMLGHYISHQENVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + ++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKNELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I +
Sbjct: 545 VSDLLITTTHHDILFFTNRGRAFVLKAYEIPESGRQAKGTAIVNLLAVESDERITAVIQI 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 KEFRPDRFLFLGTKRGIVKKTPLIEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G I D +RS+ R TRG + L DGD++ +MDI+
Sbjct: 665 TRHGKAIAFPEDGVRSMGRVTRGVRGINLSDGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+E G+GKR +R GLI K + + VVG + +
Sbjct: 706 --KQGSEVLTVTEGGYGKRTTAEEYRTQTRGGKGLINMKVTEK----TGPVVGIRVVRE- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM L S ++ S + ++
Sbjct: 759 --NQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTLGESDRVASMATMN 807
>gi|270308878|ref|YP_003330936.1| DNA gyrase subunit A [Dehalococcoides sp. VS]
gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
Length = 809
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/828 (44%), Positives = 540/828 (65%), Gaps = 39/828 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + +EM GSY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM++LG+ P+KK AR+
Sbjct: 8 PINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ FS RYPL+ G GNFGS+D DPAAAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQ 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E LL DID++TV+F+PNFD S +EP++LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 IAE-QLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLA 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL +C LI NP+ + EL++++ GPDFPTGG I+G GI AY TG+G+I ++ K +
Sbjct: 187 ELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+D+ R + + EIPYQ NK+ LV KIAELV+++ L GISD+RDESDR GMR+VIEL
Sbjct: 247 GEVDN---RKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIEL 303
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR A+P V+NSLY+ T +++SF NM+ ++DGQP+ + LKEVL+ F+DFR ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L K+R HI+EG+ LD +DR+I I+R + + TA L EF S QA AILD+
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAEFDFSAIQAQAILDL 423
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K +DE LM++I LE+LLS + I L++++ +L+ + PR + +
Sbjct: 424 QLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSYGQPRATEI 483
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ + + D++P+ ++++ +SE+G++KR+ N F LQ+RG G R DA+
Sbjct: 484 SNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRF 543
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
V HD +L+F++RG V+S R + IP + +R A GT +V ++ ++ ERIT+I+ +
Sbjct: 544 LSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKS 603
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D FL+M T G IKK SL F+++R++G+IA+ L DEL T + + +A++
Sbjct: 604 FPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKDILLATR 663
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +R+ R + G A+ L GD++ SMD+
Sbjct: 664 LGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDV---------------------A 702
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
G ++ V+E+G GK + + + G+I +K D+ V V ++E
Sbjct: 703 QEGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVV--DKTGEV-VASKVVSE---- 755
Query: 865 DEQVVLVSQSGTVNRIKVRD------ISIQARYARGVILMRLELSGKI 906
+Q++L+S G V R +V++ I I R +GV +MRLE ++
Sbjct: 756 TDQMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRV 803
>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 815
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/835 (43%), Positives = 545/835 (65%), Gaps = 35/835 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N R++PV++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ LGL+ KP
Sbjct: 8 NEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKP 67
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK VVGEVLGK+HPHGD AVYD++VRMAQDFS+R L+ GHGNFGSID DPAAAMRY
Sbjct: 68 YKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRY 127
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P +L+NG+ GIAVGMATN
Sbjct: 128 TEARLSKIALEML-TDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIAVGMATN 186
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + A I NP T + L++Y+ GPDFPTGGLI+G GI + Y TGRG+I
Sbjct: 187 IPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRETYETGRGKII 246
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E + +++ ++I E+PY KS LVEKIAELV +K ++GISD+RDESDR+G
Sbjct: 247 VRAKAEIEEHNGRNR---IVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNG 303
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR +P +V+N LY T +Q +F M+ ++DG PK + L ++++ ++D +
Sbjct: 304 MRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVD 363
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR RF+L + +ER HI+EG+ + LD++D VI ++R + + A L D+F LS+KQ
Sbjct: 364 VITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKFGLSDKQ 423
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AI+DM L RLT LER+K DE L +I +L+ +L+ K +L++I++E+ E+K++FS
Sbjct: 424 SQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGILADEKKVLEIIKKELKEIKDKFS 483
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+ R + + A ++D D++ ++ ++ ++ GY+KRM + + Q RG G S R
Sbjct: 484 SERKTHIV-AKVDEMDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKSQKRGGKGISGISTR 542
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + HD +L+F+++G VYS R IPE R A GT +V ++ + E++++
Sbjct: 543 EDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQIDQDEKVSA 602
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ + +++VM T G IKK ++ F I+ +G AI+L GDEL V D
Sbjct: 603 VIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDDGDELINVMLTNGDRE 662
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NG I + +R + R RG +A+ L+D D + MD+I ED+
Sbjct: 663 IIIGTANGYCIRFHENNLRPMGRQARGVIAISLRDDDYVVEMDLI-----------NEDN 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+E+G+GKR + +R G+I K + + +L ++ V
Sbjct: 712 E----------ILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQKTGKLVSIMSV--- 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E DE ++++S +G + R ++ DIS R A GV LM+L+ ++ S + I
Sbjct: 759 ----SEKDE-LMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKI 808
>gi|406919593|gb|EKD57843.1| hypothetical protein ACD_57C00125G0003 [uncultured bacterium]
Length = 883
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/844 (43%), Positives = 542/844 (64%), Gaps = 32/844 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I PVE+ EEM SY+ Y+MSV++ RALPDVRDGLKPV RRI++AM +G++ + K
Sbjct: 6 KIQPVEIIEEMQRSYLDYAMSVIVARALPDVRDGLKPVQRRIIYAMQRIGVTHSARYTKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A+VVGEVLGK+HPHGD VY++LVRMAQ+FS+R PLI G GNFGS+D DP AAMRYTE R
Sbjct: 66 AKVVGEVLGKYHPHGDAPVYEALVRMAQNFSMRIPLIDGQGNFGSVDGDPPAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E LL D+D++TV+F NFD + KEP LPA LP LL+NGASGIAVGMATNIPPH
Sbjct: 126 LAHITET-LLYDLDKNTVDFADNFDGTLKEPIFLPALLPNLLINGASGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI+NPE++++ L+E + GPDFPTG I I AY TGRG+I +RGK
Sbjct: 185 NLGEIIDAVICLINNPESSVEGLMESVKGPDFPTGAQIYDISEITAAYATGRGKILMRGK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E ++K+ + +II EIPYQ NK+ LV KIA+LV+ K LDGISD+RDESDR GMRIV
Sbjct: 245 ADIE--ETKAGKFQIIITEIPYQVNKATLVTKIADLVKEKKLDGISDLRDESDRRGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A P V+N+LY+ TALQ SF NMV ++DG P+ + LK +L+ F+ R V+ R
Sbjct: 303 IELKRDARPQSVLNNLYKHTALQQSFPVNMVALVDGTPQTLTLKMILEEFIKHRQKVIIR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R++F+L + K+R HI+EG+ + +DN+D VI ++++ + A L +FKL+E QA AI
Sbjct: 363 RSQFELDEAKKRAHILEGLKIAVDNIDAVIETIKKSKDPAEAKVNLMQKFKLTEVQALAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RL LER+K +E +E+I LEELL S + IL++ + E++++K RF R
Sbjct: 423 LDMQLKRLAALERQKIEEELAMTLEEIAYLEELLKSPEKILEVAKGELLKIKERFGDDRR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + G+ + D+I N+ ++ I+ GYVKR +F Q RG G S + D
Sbjct: 483 TRVFKQKIGEFSEEDLIANEATIVTITVGGYVKRQDIGSFRTQRRGGKGISGITTKEEDT 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
++ HD++L+F+D+G V+ + Y +PE +R + G +V +L LS E++ SI+PV
Sbjct: 543 VAHLFAAYTHDNLLFFTDKGRVFQLKVYDLPESSRTSKGVAIVNLLDLSQDEKVLSILPV 602
Query: 683 SE-----FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
+ ++++M T NG +KK +N ++SIR +GIIAI+L D+L+W + T D+
Sbjct: 603 KKNKEATTNNYKYVLMATKNGVVKKTEINQYASIRRSGIIAIKLSGDDQLRWAKLTTGDN 662
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+V + S++GM I +R ++R+T G +++K GD++ MD+I
Sbjct: 663 IVFLVSRHGMSIKFDERDVRPMARDTMGVRGIKIKTGDELIGMDVI-------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+++K LL V++ G GK+ ++ P G +G K + V
Sbjct: 709 DKNDIKAD----LLVVTDKGIGKKTQGLAW---PKQLRGGVGVKAANLTDKTGEIVCAQI 761
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
L ++DE ++L SQ G V R +R I R +GVI+MRL K+ + ++I +
Sbjct: 762 LT---KADEALILTSQKGQVMRTTLRSIPRLTRDTQGVIIMRLGSDDKVAATTVIQKKQD 818
Query: 918 ETDL 921
E +
Sbjct: 819 EEQI 822
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 41/311 (13%)
Query: 643 IVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP--VSEF------AGDQFLVML 694
I Y K PE A L++I +R T + + EF A + +V +
Sbjct: 449 IAYLEELLKSPEKILEVAKGELLKIKERFGDDRRTRVFKQKIGEFSEEDLIANEATIVTI 508
Query: 695 TMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCC-TNDDLVAMASQNGMVILS 751
T+ GY+K+ + F + R GI I D + + T+D+L+ + + L
Sbjct: 509 TVGGYVKRQDIGSFRTQRRGGKGISGITTKEEDTVAHLFAAYTHDNLLFFTDKGRVFQLK 568
Query: 752 SCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWL 810
D+ S SR ++G + L D + I+P +++ E + +N K ++
Sbjct: 569 VYDLPES-SRTSKGVAIVNLLDLSQDEKVLSILP------VKKNKEATTNNYK-----YV 616
Query: 811 LFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVL 870
L +++G K+ ++ + + R G+I K S +D+L A+ D V L
Sbjct: 617 LMATKNGVVKKTEINQY--ASIRRSGIIAIKLSGDDQL--------RWAKLTTGDNIVFL 666
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKL 930
VS+ G + RD+ AR GV ++++ ++ +I + + DL +
Sbjct: 667 VSRHGMSIKFDERDVRPMARDTMGVRGIKIKTGDELIGMDVIDKNDIKADLL-------V 719
Query: 931 ATESGVSEMLQ 941
T+ G+ + Q
Sbjct: 720 VTDKGIGKKTQ 730
>gi|421075098|ref|ZP_15536113.1| DNA gyrase subunit A [Pelosinus fermentans JBW45]
gi|392526540|gb|EIW49651.1| DNA gyrase subunit A [Pelosinus fermentans JBW45]
Length = 811
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/839 (42%), Positives = 548/839 (65%), Gaps = 35/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV + +EM GSYI Y+MSV+ RALPDVRDGLKPVHRRIL+AMHE G+++ KP+KK
Sbjct: 7 KVLPVSIEQEMKGSYIDYAMSVITMRALPDVRDGLKPVHRRILYAMHEAGMAANKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VY ++VR+AQDFS RY ++ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYQAIVRLAQDFSTRYLMVDGHGNFGSVDGDSAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++EAM+ ADI++DTV+F PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MSRIAEAMV-ADIEKDTVDFTPNYDESMQEPTVLPAKVPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L +I N E T+ EL+ + GPDFPT GLI+G GI AY TGRG + +R +
Sbjct: 186 NLREVIDALIMMIDNAEITIPELMTAIKGPDFPTRGLILGKEGIYSAYTTGRGVVKMRAQ 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
V+ + + R +I+ EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDRSGMRIV
Sbjct: 246 ARVDKMANGKPR--IIVTEIPYQVNKATLIEKIADLVRDKVIDGITDLRDESDRSGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + +++N LY+ T LQ +F M+ +++G+P+ + L+E+L +L+ + V+ R
Sbjct: 304 IELRRDINADVILNQLYKHTQLQDTFGIIMLALVEGRPRVLNLQEMLYYYLEHQKIVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L++ K R HI+EG+ + LD++D VI +R++ + A AAL + F LS+KQA AI
Sbjct: 364 RTNYELAKAKARAHILEGLKIALDHIDAVITAIRQSKTVDVARAALIEGFDLSDKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E K ++E I LE +L+ + +L +I++E+++++ RF R
Sbjct: 424 LDLRLQRLTGLEREKIENEYKDVLETIEWLESVLADDQKVLNIIKEELLDIRKRFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ D D +L D+I ++++L ++ YVKR+ +T+ Q RG G + + D
Sbjct: 484 TIITD-DLSKLAVEDLIAEEDIVLTLTRSSYVKRLPVDTYRNQKRGGRGVAGMGTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H ++L+F++RG VY + Y+IPE +R + GT ++ +L L ERIT++IP+
Sbjct: 543 VEHLFVTTTHHNILFFTNRGRVYRLKGYEIPEASRTSKGTSIINLLPLEGQERITAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F ++L M T G +KK L F + R TG+IAI L D+L V+ + V M
Sbjct: 603 KAFTNTRYLFMATAKGIVKKTELMDFDTARKTGLIAITLDEDDDLIGVKLTNGEQYVLMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G+ I +R + R RG +RL +GD + MD L ++ E
Sbjct: 663 TRDGLAIYFPETDVRDMGRTARGVRGIRLHEGDSVVGMD----TLKQEGE---------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G+GKR P+ S+R G+I K + + VVG + G
Sbjct: 709 -------VLTVTAEGYGKRTPVDSYRNQKRGGKGVINTKVTEK----TGQVVGIKVVRPG 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ +++L+S G V RI + IS+ +R +GV LM+ +G+ ++ E + D+
Sbjct: 758 Q---ELMLISSEGIVIRIDIDTISVISRNTQGVKLMK---TGENDKVVALAAVEKKADI 810
>gi|220930857|ref|YP_002507765.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
Length = 816
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/843 (44%), Positives = 542/843 (64%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V++ EM G+Y+ Y+MSV++ RALPDVRDGLKPV RRIL+A+H+LG++ KP KK
Sbjct: 9 KVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD++VRMAQ+FS RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 69 ARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DID++TV+F PNFDES +EP +LPARLP LL+NG SGIAVGM+TNIPPH
Sbjct: 129 MARLT-TELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NP+ +++L++ + GPDFPTGG+IMG I AY+TGRGR+ VRGK
Sbjct: 188 NLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVRGK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + K+ + +II EIPYQ NK+ LVEKIA LV ++ + GISD+RDESDR G+RIV
Sbjct: 248 ARIE--EDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+G P +++N LY+ T LQ ++ M+ ++DG P+ + LKE+L +L+ + VV R
Sbjct: 306 IELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L + + R HI+EG+ + L N+D +++++REAP TA L + F L+EKQA+AI
Sbjct: 366 RTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQAEAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L M L+RLT LER K E K L E+I +L+ +L +I+ E++ELK +F R
Sbjct: 426 LRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD D+IP +++++ ++ GY+KRM + + Q RG GK G + +N
Sbjct: 486 TEIS-IQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRG--GK--GIIGINTK 540
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ H + L+F+++G VY R ++IP+ +R A GT +V +L L + ERIT+
Sbjct: 541 EEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELEEEERITT 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ EF +++LVM+T NG IKK L + S R TG+I + L DEL V+ +
Sbjct: 601 VIPIREFDEERYLVMVTRNGMIKKTPLAEYES-RYTGLIGLTLRDEDELIDVKYTDGNQS 659
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V + + G I + +RS+ R G A+ L+DGD + M +
Sbjct: 660 VIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDGDYVVGMGV---------------- 703
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
S G LL ++E G+GKR PL +R GLI + ++ LA V VV
Sbjct: 704 -----DSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAGVKVV--- 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
D ++L++ G + R +V IS R GV ++RLE ++ S + IS E
Sbjct: 756 -----REDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEK 810
Query: 918 ETD 920
+ +
Sbjct: 811 DIE 813
>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
Length = 855
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/825 (43%), Positives = 541/825 (65%), Gaps = 47/825 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPD RDGLKPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE +
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DI++DT+++ N+D S++EP ++PAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NP+ ++ EL+EY+PGPDFPTG I+G GI AY+TGRG IT+R +
Sbjct: 187 QLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAQ 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E K + +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 TEIEEYKGKPR---ILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R A+ ++++N+LY+ TALQ+SF N++ +++GQPK + LKE L+ +L + V+ R
Sbjct: 304 IELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L ++F LS +QA AI
Sbjct: 364 RTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR- 561
LDM L+RLT LER K +E K L+ +I +L+ +L+ + +L++I +E+IE+K +F+ R
Sbjct: 424 LDMRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFNDERR 483
Query: 562 --LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+SM ED L+D D+IP +++ ++ GY+KRM +T+ Q RG GK + +
Sbjct: 484 TVISMNED----HLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRG--GKGIQGMGT 537
Query: 620 NDA--MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
ND M +H +L+F+++G VY + Y+IPE R A G P++ +L + E I+
Sbjct: 538 NDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDETIS 597
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++IP+ EF + +L LT +G K+ L+ F++IR G+ AI L DEL VR
Sbjct: 598 TVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHGVRLTDGGQ 657
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
V + +++GM I +R + R G + L D D + MDI+ E+
Sbjct: 658 EVIIGTKHGMAIRFHETDVRLMGRTAGGVKGISLSDDDHVVGMDIL------------EE 705
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGF 856
+H +L V+E+G+GKR P+ +R G+ + ++ L ++ VV
Sbjct: 706 NH---------QVLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVSLKVV-- 754
Query: 857 SLAEDGESDEQ-VVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
SDE +++++ SG + R+ V IS R +GV L+R+
Sbjct: 755 -------SDEHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRV 792
>gi|374992787|ref|YP_004968286.1| DNA gyrase subunit A [Desulfosporosinus orientis DSM 765]
gi|357211153|gb|AET65771.1| DNA gyrase, A subunit [Desulfosporosinus orientis DSM 765]
Length = 824
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/841 (42%), Positives = 547/841 (65%), Gaps = 33/841 (3%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+ +++PVE+ +EM S+I YSMSV++ RALPDVRDGLKPVHRRIL+ +HELGL+ KP+
Sbjct: 6 IGGKVLPVEIADEMRRSFIDYSMSVIVSRALPDVRDGLKPVHRRILYTLHELGLTPNKPY 65
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
K AR+VG+ +GKFHPHGD+++YD++VR+ QDF+ RYPL+ GHGNFGSID D AAAMRYT
Sbjct: 66 SKSARLVGDCMGKFHPHGDSSIYDAVVRLEQDFASRYPLVDGHGNFGSIDGDSAAAMRYT 125
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+E ++ ML DID+DT++F PN+DE Q+EP++LP++ P LL+NG+SGIAVGMATNI
Sbjct: 126 ELRMEKITTYML-EDIDKDTIDFTPNYDEKQEEPTVLPSKFPNLLVNGSSGIAVGMATNI 184
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNL E++D AL+ +P ++ L++Y+ GPDFPTG IMG+ GI AY TGRG I +
Sbjct: 185 PPHNLTEVIDATVALLDDPNLSVDNLMDYIKGPDFPTGATIMGHEGIRSAYLTGRGSIKL 244
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E ++ KS + +I+ EIP+ NK+ ++EKIA+LV K +DGI+D+RDESDRSGM
Sbjct: 245 RAKAEIEQME-KSGKTRIIVTEIPFLVNKARMIEKIADLVREKKIDGITDLRDESDRSGM 303
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIEL+R +P +++N LY+ T L+ +F NM+ ++DGQP+ + LK+++ F++ + V
Sbjct: 304 RIVIELRRDVNPKVILNQLYKHTQLEDTFGVNMLALVDGQPRTLNLKDMIHYFIEHQKDV 363
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR RF+L++ + HI+EG+ + LD++D VI +R +P S A L F LSEKQA
Sbjct: 364 IVRRTRFELNKAEAEAHIIEGLRIALDHIDEVIETIRSSPDESKARENLTIRFGLSEKQA 423
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AI+DM L+RLT LER+K ++ + LM I L+ +L+S ++ +I+ ++ E+K++F
Sbjct: 424 QAIVDMRLKRLTGLEREKLENQYQDLMNTIAYLKAVLASEAMVIGIIKNKLEEIKSKFGD 483
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R +++ D ++D D+I +++++ ++ GY+KR+ +T+ QNRG G +
Sbjct: 484 SRRTLIT-IDVSKMDVEDLIAVEDVVVTVTHYGYIKRLPLSTYKSQNRGGKGVHGMATKE 542
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + H ++L+F+ +G VY +A++IPE +R A GT ++ +L+L E IT++
Sbjct: 543 EDFVEHLFTTTTHHYILFFTSQGKVYRLKAHEIPESSRTAKGTAVINLLNLGQDEMITAV 602
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ + E++ D FL+ T NG +KK +L + S R G+IA+ L GDEL V+ D +
Sbjct: 603 MAIKEYSPDYFLITATKNGIMKKTALQEYDSARKDGLIALTLDEGDELIGVKLTQGLDDI 662
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A++ G+ I +R + R RG ++L++ D + MD+I
Sbjct: 663 LLATKKGIAIRFPESEVRYMGRTARGVKGIKLEENDMVVGMDVI---------------- 706
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSL 858
G G LL +SE+G KR L FR G+IG K +A+ L + VV
Sbjct: 707 ----GDEGE-LLTMSENGFAKRTDLKEFRVQGRGGRGVIGMKLNAKTGNLVGIKVV---- 757
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
++++++++ +G + RI V IS Q R A+GV+ MR S + A ++ + +
Sbjct: 758 ----HVEDELMVITNNGIMLRIPVSSISNQGRSAQGVLAMRTGDSNVVAIAKVVMKDDED 813
Query: 919 T 919
T
Sbjct: 814 T 814
>gi|333372856|ref|ZP_08464777.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437]
gi|332971210|gb|EGK10173.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437]
Length = 813
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/830 (42%), Positives = 538/830 (64%), Gaps = 32/830 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ MHELG++S KP++K
Sbjct: 6 RINEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYTMHELGMTSDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL +HPHGD AVYD++VRMAQDFS RY L+ GHGNFGS+D D AAMRYTE R
Sbjct: 66 ANVVGNVLASYHPHGDGAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDSPAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI+++T++F PN+D +EP +LPAR P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MAPITRE-LLRDIEKETIDFTPNYDGRLEEPVVLPARFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L A+I NPE T+ EL+E++ GPDFPT GLI+G GI AYRTGRG I ++ K
Sbjct: 185 NLTEVIDGLLAMIQNPEITIDELMEHIKGPDFPTAGLILGRDGIKKAYRTGRGSIKMQAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E ++ + +M ++++E+PYQ NK+ LVEKIAELV +K +DGI+D+RDESDR+GMR++
Sbjct: 245 TRIE--EANNGKMRIVVEELPYQVNKAKLVEKIAELVRDKKIDGITDLRDESDRNGMRVI 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P +++N+LY+ T LQ+SF NM+ ++DG+P + LK+VL +L+ + V+ R
Sbjct: 303 IELRRDVNPKVLLNNLYKQTNLQTSFGVNMLALVDGKPLVLNLKQVLHHYLEHQVEVIRR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + +ER HI+EG+ + LD++D VI ++R + + A L ++F LS+KQA AI
Sbjct: 363 RTQFDLRKAEERAHILEGLRIALDHIDEVIELIRGSRTTQEARDGLMEKFGLSDKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E L++ I +L+ +L+S + I ++ E+ E+++++ R
Sbjct: 423 LDMRLQRLTGLEREKIETEYDELLKTIAELKAILASEEKIRGVVRDELTEVRDKYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + ++G + D D+IP DE+ + ++ +GY+KRM + + Q RG G S R +D
Sbjct: 483 SRIM-LNTGDIADEDLIPEDEVTILMTHRGYIKRMLLSGYRAQRRGGRGVSGMGTREDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V +H+++L+FS++G VY +AY++PE +R A GTP++ ++ + GE I ++IPV
Sbjct: 542 VQHLFVTNSHNYLLFFSNKGKVYRMKAYEVPELSRTARGTPIINLIQIDQGEYIEAVIPV 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ D +L T G +KK L F IR G+ AI L GDEL VR + + +
Sbjct: 602 REFSPDSYLFFGTKFGVVKKTPLEEFGHIRRNGLFAINLREGDELVGVRLTDGEQEIMLG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I +R + R G + L D++ M+++ D ER
Sbjct: 662 TRRGMSIRFPEQDVRQMGRTATGVKGIALGKDDEVVGMEVV------DPERE-------- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
++ V+ G+GKR PLS +R G+ + VVG +
Sbjct: 708 -------VVVVTSKGYGKRTPLSEYRTQSRGGKGIKAQNVTK----TKGHVVGLKVV--- 753
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DE +++V+ SG V R+ + IS RYA+GV L+ ++ ++ S + +
Sbjct: 754 SPDEDLMIVTDSGVVIRMNIDGISRMGRYAQGVKLISVKQDEEVASLARV 803
>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
Length = 824
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/833 (42%), Positives = 544/833 (65%), Gaps = 32/833 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 18 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYKKS 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 78 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +SE ++L DID++TV+F N+D S+KEP +LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 138 MSKISE-LMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPPH 196
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+ T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 197 NMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 256
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 257 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M L+ VL ++ + +V+ R
Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITR 374
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL + FKL+EKQA AI
Sbjct: 375 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQAI 434
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K E + ++ I + + +L+ R +L +I+ E+IE+++++ R
Sbjct: 435 LDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYGDERR 494
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 495 TEIT-FDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 553
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I V
Sbjct: 554 VSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQV 613
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 614 REFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 673
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G I D +RS+ R RG + L DGD++ +MDI+
Sbjct: 674 TRHGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDIL------------------- 714
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
SG +L V+E G+GKR +R GLI K + + VVG +
Sbjct: 715 --KSGSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEK----TGSVVGIRVV--- 765
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
++++L++ G V R V +IS+ +R +GV LM + + ++ S + +++T
Sbjct: 766 RGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMT 818
>gi|406667900|ref|ZP_11075651.1| DNA gyrase subunit A [Bacillus isronensis B3W22]
gi|405384307|gb|EKB43755.1| DNA gyrase subunit A [Bacillus isronensis B3W22]
Length = 832
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/812 (43%), Positives = 540/812 (66%), Gaps = 37/812 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
E+ S+++Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG +S KP+KK AR+VG+V+G
Sbjct: 17 EIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKSARIVGDVMG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
KFHPHGD+++YD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ ++ ML
Sbjct: 77 KFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI++DT+++ PN+D S+ EP +LPAR P LL+NGASGIAVGMATNIPPH+LGE +D +
Sbjct: 137 -RDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHHLGETIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+ NP T +EL+E +PGPDFPTGG+I+G GI AY +GRG +T+R K E+E +
Sbjct: 196 LAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIRAKVEIE--QAS 253
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+ + +++ E+PYQ NK+ L+EKIAELV +K +DGI+++RDESDR+GMRIVIE++R A+
Sbjct: 254 NGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIEVRRDANA 313
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+L++ TA+QSSF NM+ ++DGQPK + LKEVL +L+ + V++RR F+L +
Sbjct: 314 NVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKRRTAFELRKA 373
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ER HI+EG+ + LD++D +I I+R + S A L + F LSE+QA AILDM L RL+
Sbjct: 374 EERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSERQAQAILDMRLVRLS 433
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K E + L++ I +L+ +L+ ++++I E+ ++K R+S R + +
Sbjct: 434 GLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLE 493
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMSDFIVC 629
++D D+IP + +L ++ GY+KR+ NT+ Q RG G+ V + N D + +
Sbjct: 494 MIEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRG--GRGVQGMGTNEDDFVEHLLFT 551
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
HD +L+F+ +G V+ A+ Y+IPE R A G P+V +L++ GE +T++I V+EF D
Sbjct: 552 STHDTILFFTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNIDKGEHVTAMIRVTEFKEDA 611
Query: 690 FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI 749
+ + T G K+ ++ F++IRT G+IAI L D+L V + + + +GM++
Sbjct: 612 YFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLV 671
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809
D IRS+ R+ G ++L++GD + M+I+ G
Sbjct: 672 RFKEDDIRSMGRSAAGVRGIKLREGDFVVGMEIL---------------------EPGQE 710
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQV 868
+L V+E+G+GKR P S +R +GL + + ++ ++ AV V DG D +
Sbjct: 711 ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAV------DGSED--I 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 763 MLITINGMLIRMDVNDISVIGRSTQGVRLIRL 794
>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
Length = 820
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/835 (42%), Positives = 538/835 (64%), Gaps = 31/835 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ +++P++++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+++HELGL+ KP
Sbjct: 3 SLTGKVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+K A +VG+V+ FHPHGD A+YDS+VR+AQDFS RYPLI GHGNFGSID DP AAMRY
Sbjct: 63 FRKSAGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML ADID++TV+F PN+D KEP +LPA++P LL+NG+SGIAVGMATN
Sbjct: 123 TEARMAKITLEML-ADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHN+GE++D + +I NP T EL++ + GPDFPTG IMG GI AYRTGRG I
Sbjct: 182 IPPHNIGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIK 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + +E + R +I+ EIP+Q NK+ LVEKIAELV++K ++GISD+RDESDR G
Sbjct: 242 IRAQATIET--KNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELK+ A+P++++N LY+ T +Q SF M+ +++ QPK + L +VL +L+ +
Sbjct: 300 MRIVIELKKDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKD 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +++L + + R HIVEG+ + L +LD VI+I+RE+ + A L F L+E Q
Sbjct: 360 VITRRTKYELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQ 419
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AI++M LR LT LE +K E K L+ +I L +L+ K +L +I+ E+ E+K +F+
Sbjct: 420 AEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFA 479
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR +++ + +G D D+I + M++ I+ +GY+KR+ +T+ Q RG G + +
Sbjct: 480 DPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTK 539
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + V H ++L+F+++G Y + ++IPE R A GTPLV +L +S GE +T+
Sbjct: 540 EEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYVTT 599
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ +F + +L M T G +KK +L+ + + R GI AI L DEL V +
Sbjct: 600 VIPIKDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREE 659
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++++ GM I + +R + R RG + L D + +MD++
Sbjct: 660 IILSTREGMAIRFPEEDVRPMGRTARGVKGITLTGDDSVVNMDVV--------------- 704
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
G LL V+ +G+GKR L +R G+I K S + VVG +
Sbjct: 705 ------KDGGDLLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRNGP----VVGALV 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+D D++++++S G + R+ +D+S R +GV LM++ + I + + ++
Sbjct: 755 VKD---DDEIMMISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKVA 806
>gi|402304090|ref|ZP_10823169.1| DNA gyrase, A subunit [Selenomonas sp. FOBRC9]
gi|400376016|gb|EJP28909.1| DNA gyrase, A subunit [Selenomonas sp. FOBRC9]
Length = 815
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/833 (42%), Positives = 545/833 (65%), Gaps = 32/833 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+ T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 188 NMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 248 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M L+ VL ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL + FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K E + ++ I + + +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRSKVLAIIKNELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I V
Sbjct: 545 VSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 REFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G I D +RS+ R RG + L DGD++ +MDI+
Sbjct: 665 TRHGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
SG +L V+E G+GKR +R GLI K + + VVG +
Sbjct: 706 --KSGSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEK----TGSVVGIRVV--- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
++++L++ G V R V +IS+ +R +GV LM + + ++ S + +++T
Sbjct: 757 RGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMT 809
>gi|393198826|ref|YP_006460668.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
Length = 832
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/812 (43%), Positives = 540/812 (66%), Gaps = 37/812 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
E+ S+++Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG +S KP+KK AR+VG+V+G
Sbjct: 17 EIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKSARIVGDVMG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
KFHPHGD+++YD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ ++ ML
Sbjct: 77 KFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKIAMEML 136
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI++DT+++ PN+D S+ EP +LPAR P LL+NGASGIAVGMATNIPPH+LGE +D +
Sbjct: 137 -RDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHHLGETIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
A+ NP T +EL+E +PGPDFPTGG+I+G GI AY +GRG +T+R K E+E +
Sbjct: 196 LAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIRAKVEIE--QAS 253
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+ + +++ E+PYQ NK+ L+EKIAELV +K +DGI+++RDESDR+GMRIVIE++R A+
Sbjct: 254 NGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIEVRRDANA 313
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++V+N+L++ TA+QSSF NM+ ++DGQPK + LKEVL +L+ + V++RR F+L +
Sbjct: 314 NVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKRRTAFELRKA 373
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ER HI+EG+ + LD++D +I I+R + S A L + F LSE+QA AILDM L RL+
Sbjct: 374 EERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSERQAQAILDMRLVRLS 433
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K E + L++ I +L+ +L+ ++++I E+ ++K R+S R + +
Sbjct: 434 GLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLE 493
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMSDFIVC 629
++D D+IP + +L ++ GY+KR+ NT+ Q RG G+ V + N D + +
Sbjct: 494 MIEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRG--GRGVQGMGTNEDDFVEHLLFT 551
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
HD +L+F+ +G V+ A+ Y+IPE R A G P+V +L++ GE +T++I V+EF D
Sbjct: 552 STHDTILFFTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNIDKGEHVTAMIRVTEFKEDA 611
Query: 690 FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI 749
+ + T G K+ ++ F++IRT G+IAI L D+L V + + + +GM++
Sbjct: 612 YFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLV 671
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809
D IRS+ R+ G ++L++GD + M+I+ G
Sbjct: 672 RFKEDDIRSMGRSAAGVRGIKLREGDFVVGMEIL---------------------EPGQE 710
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQV 868
+L V+E+G+GKR P S +R +GL + + ++ ++ AV V DG D +
Sbjct: 711 ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAV------DGSED--I 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 763 MLITINGMLIRMDVNDISVIGRSTQGVRLIRL 794
>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
Length = 813
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/838 (43%), Positives = 545/838 (65%), Gaps = 33/838 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N +++ V++ +EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M+ELGLS K
Sbjct: 6 NNEGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGLSPEKS 65
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++KCAR+VG+VLGK+HPHGD++VYD+LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 66 YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 125
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ ML DI+++TV+F PNFD S+KEPS++P+R P LL+NG+SGIAVGMATN
Sbjct: 126 TEAKMGKITIEML-RDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVGMATN 184
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D + LI +P+ T+ EL+ + GPDFPT G+IMG GI AY TGRG++
Sbjct: 185 IPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGRGKVI 244
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E + R +I+ E+PYQ NK+ L+E +AELV++K +DGISDIRDESDR G
Sbjct: 245 MRAKAEIE---EEKGRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDREG 301
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+KR ++P++V+N LY+ T +Q +F M+ ++D +PK + LKE+L +++F+
Sbjct: 302 MRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQKE 361
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR +F L + R HI+EG+ + LD++D VI ++R + + A L +F L+EKQ
Sbjct: 362 IIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTKFSLTEKQ 421
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER K +E LME I L ++L++ +L++I++E+ E+KN++
Sbjct: 422 AQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELHEIKNKYG 481
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E + ++ D+I +E+++ ++ GY+KR+ + ++ Q RG G +
Sbjct: 482 DERKTEIE-LNINEISIEDLIEEEEVVVTLTNSGYIKRISSDAYSSQKRGGKGIQAMTTK 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + H +L+F++ G VY +AY+IPE R A GT +V +L + E +
Sbjct: 541 EDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNIVNLLPVDANEHVRE 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I + + + +L++ T G IKK SLN F +IR GIIAI L DEL V+ D
Sbjct: 601 VIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDEDELLKVKVTRGDAE 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + +QNG I S +R + RN+ G A+ L+ D SMDI+ ED
Sbjct: 661 IIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVAVSMDIV-----------VEDE 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
++L V+E+G GKR S + N GLI ++ + D+ +V +
Sbjct: 710 ----------YVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVT--DKTGK--IVSARV 755
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
A+D SDE ++L++ S T RI V D+SI R A GV LMR KI + + IS E
Sbjct: 756 AKD--SDE-LMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDE 810
>gi|373859275|ref|ZP_09602005.1| DNA gyrase, A subunit [Bacillus sp. 1NLA3E]
gi|372450944|gb|EHP24425.1| DNA gyrase, A subunit [Bacillus sp. 1NLA3E]
Length = 867
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/842 (43%), Positives = 546/842 (64%), Gaps = 39/842 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN +I + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ S K
Sbjct: 5 PN--SQIKEINISQEMKSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VG+V+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT++F N+D ++EP +LPAR P LL+NG +GIAVGMAT
Sbjct: 123 YTESRMSKIS-MELLRDINKDTIDFQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + A+ H+PE T QEL+E +PGPDFPTGGLI+G GI AY TGRG +
Sbjct: 182 NIPPHQLGEVIDGVLAISHDPEITTQELMEIIPGPDFPTGGLILGRSGIRKAYETGRGSV 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
T+R K E+E S K + +I+ E+PYQ NK+ L+EKIAEL +K +DGI+D+RDESDR+
Sbjct: 242 TIRAKVEIEQ-KSNGKEV-IIVNELPYQVNKARLIEKIAELARDKKIDGITDLRDESDRN 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE+++ A+ ++++N+LY+ TALQ+SF N + +++G PK + LK+ L +LD +
Sbjct: 300 GMRIVIEVRKDANANVLLNNLYKHTALQTSFGINTLALVNGHPKVLTLKQCLVHYLDHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D VI ++R + + A L +F+LSEK
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLKIALDNIDAVISLIRGSRTTDIAREGLMTQFQLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E +TL+ I +L +L++ + IL++I +E+ E+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEELQTLLNLIEELNAILANEEKILEIIREELTEIKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + + ++D D+IP + +++ ++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDKRRTEIVTSGVEMIEDEDLIPKESVVITLTHNGYIKRLPVSTYRSQKRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE
Sbjct: 538 NTNEDDFVEHLITTSTHDTILFFTNKGKVYRSKGYEIPEYSRTAKGLPIINLLEVDKGEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+ +IIPV EF D L T G K+ L F++IR G+IA+ L DEL VR
Sbjct: 598 VNAIIPVEEFVDDWSLFFTTKQGVSKRSPLTSFANIRNNGLIALNLREEDELISVRLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++ GM+I +RS+ R G + L D D++ M+++
Sbjct: 658 SKEIIIGTKKGMLIRFPETDVRSMGRTATGVKGINLDDDDEVVGMEVL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVV 854
ED+ +L V++ G+GKR P +R G+ + ++ L ++ VV
Sbjct: 706 EDNTD---------ILIVTQKGYGKRTPAVEYRVQGRGGKGIKTCNITEKNGNLISMKVV 756
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
GE D V+L++ G + R+ V DIS R +GV L+RL S Q A++ V
Sbjct: 757 ------TGEED--VMLITTGGVLIRMDVNDISSMGRNTQGVRLIRLGESEHDQVATVAKV 808
Query: 915 TE 916
+
Sbjct: 809 AK 810
>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
gi|4033397|sp|O50628.1|GYRA_BACHD RecName: Full=DNA gyrase subunit A
gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
gi|5672653|dbj|BAA82691.1| gyrA [Bacillus halodurans]
gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
Length = 833
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/821 (43%), Positives = 537/821 (65%), Gaps = 39/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI++DT+++ N+D S+KEP ++P+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NP+ ++ EL+E++PGPDFPTG I+G GI AY+TGRG IT+R K
Sbjct: 187 QLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E K + +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 TEIEEHHGKQR---IIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+++ A+ ++++N+LY+ TALQ+SF N++ +++GQPK + LKE L+ +L + V+ R
Sbjct: 304 IEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L + F+LS +QA AI
Sbjct: 364 RTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E K L+E+I +L+ +L+ + +L +I +E++ELK +++ R
Sbjct: 424 LDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYNDERK 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + A +D D+IP +++ ++ GY+KR+ +T+ Q RG G+ + + N
Sbjct: 484 TAI-SASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRG--GRGIQGMGTNED 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + +H +L+F+++G VY + Y+IPE R A G P++ +L + E I++II
Sbjct: 541 DFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDEYISTII 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D +L +T +G K+ L+ F++IR G+ AI L GDEL VR D V
Sbjct: 601 PIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTNGDKEVI 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ GM I +R + R G + L D + MDI+ ED
Sbjct: 661 VGTRQGMAIRFHETDVRLMGRTATGVKGISLTGDDHVVGMDIV------------ED--- 705
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
G +L V+E G GKR P++ +R G+ + ++ L ++ VV
Sbjct: 706 ------GQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVSLKVVSV--- 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D +++++ SG + R+ V+DIS+ R +GV L+R+
Sbjct: 757 -----DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRV 792
>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
Length = 821
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/846 (43%), Positives = 544/846 (64%), Gaps = 37/846 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK
Sbjct: 8 KVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+ VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID++TV+F+PN+D S +EP++LPA++P LL+NG++GIAVGMATNIPPH
Sbjct: 128 MAKITGEML-ADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D L +I +P+ TL +L+ + GPDFPTG I+G GIL AY TGRG + +R
Sbjct: 187 NLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSVKMRSC 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + R ++I EIPYQ NK+ ++E IA+L NK +DGI+ +RDESDR GMRIV
Sbjct: 247 AEIEPMSKGKNR--IVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+ +P I++N LY+ T LQ +F M+ ++DG P+ + L+EVL +L+ R VV R
Sbjct: 305 IELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVVVTR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L + R HI+EG+++ LD++D VI+ +RE+ ++ A AL +F LSEKQ+ AI
Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSKFDLSEKQSIAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER K +E L + I L +L+ ++ +I E++E K +++ R
Sbjct: 425 LDMRLRRLTGLERDKIQEEYAELEKTIDYLRSVLADEHKLMGIIRDELLETKKKYADKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E AD+ +L+ D+IPN+ M+L ++ +GY+KR+ N ++ QN+G G + DA
Sbjct: 485 TQIE-ADTSELNVEDLIPNERMVLTLTRRGYIKRINANVYHTQNKGGRGIKGMATKDEDA 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIP 681
++ + AH+ VL+F++ G VY ++Y+IPE +RN+ G + +L LS GE++ ++I
Sbjct: 544 VNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPEANSRNSKGIAAINLLPLSQGEKVNALID 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V + L M T G +KK SL FS++R G+IAI L+ GD L VR D + +
Sbjct: 604 VDQVDPQANLFMATERGLVKKTSLQEFSNVRRNGLIAISLMDGDHLAKVRMTKGDQNIIL 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++ GM I +R + RNTRG + L + D + DI+ +DS
Sbjct: 664 ATKQGMAICFKETDVRPMGRNTRGVRGITLAEDDMVIGADIL-----------ADDSQ-- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L VSE G GKR + +++ G+ +K + + + +VG + +
Sbjct: 711 --------VLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITPKTGV----IVGVEVVRN 758
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVT---EP 917
++++L++ +G V R + I + + R GV + RLE + K+ + ISV EP
Sbjct: 759 ---TQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTISVEGSDEP 815
Query: 918 ETDLFL 923
D +
Sbjct: 816 VQDTLM 821
>gi|333922245|ref|YP_004495825.1| DNA gyrase subunit A [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333747806|gb|AEF92913.1| DNA gyrase, A subunit [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 820
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/835 (42%), Positives = 538/835 (64%), Gaps = 31/835 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ +++P++++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+++HELGL+ KP
Sbjct: 3 SLTGKVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+K A +VG+V+ FHPHGD A+YDS+VR+AQDFS RYPLI GHGNFGSID DP AAMRY
Sbjct: 63 FRKSAGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML ADID++TV+F PN+D KEP +LPA++P LL+NG+SGIAVGMATN
Sbjct: 123 TEARMAKITLEML-ADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHN+GE++D + +I NP T EL++ + GPDFPTG IMG GI AYRTGRG I
Sbjct: 182 IPPHNIGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIK 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + +E + R +I+ EIP+Q NK+ LVEKIAELV++K ++GISD+RDESDR G
Sbjct: 242 IRAQATIET--KNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELK+ A+P++++N LY+ T +Q SF M+ +++ QPK + L +VL +L+ +
Sbjct: 300 MRIVIELKKDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKD 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +++L + + R HIVEG+ + L +LD VI+I+RE+ + A L F L+E Q
Sbjct: 360 VITRRTKYELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQ 419
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AI++M LR LT LE +K E K L+ +I L +L+ K +L +I+ E+ E+K +F+
Sbjct: 420 AEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFA 479
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR +++ + +G D D+I + M++ I+ +GY+KR+ +T+ Q RG G + +
Sbjct: 480 DPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTK 539
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + V H ++L+F+++G Y + +++PE R A GTPLV +L +S GE +T+
Sbjct: 540 EEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEVPEAGRTAKGTPLVNLLYISSGEYVTT 599
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ +F + +L M T G +KK +L+ + + R GI AI L DEL V +
Sbjct: 600 VIPIKDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREE 659
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++++ GM I + +R + R RG + L D + +MD++
Sbjct: 660 IILSTREGMAIRFPEEDVRPMGRTARGVKGITLTGDDSVVNMDVV--------------- 704
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
G LL V+ +G+GKR L +R G+I K S + VVG +
Sbjct: 705 ------KDGGDLLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRNGP----VVGALV 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+D D++++++S G + R+ +D+S R +GV LM++ + I + + ++
Sbjct: 755 VKD---DDEIMMISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKVA 806
>gi|402300223|ref|ZP_10819750.1| DNA gyrase subunit A [Bacillus alcalophilus ATCC 27647]
gi|401724613|gb|EJS97958.1| DNA gyrase subunit A [Bacillus alcalophilus ATCC 27647]
Length = 847
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/840 (42%), Positives = 544/840 (64%), Gaps = 41/840 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPD RDGLKPVHRRIL+AM++LG+++ K +KK
Sbjct: 8 RVKGINIAKEMKTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTADKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE +
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELIRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NPE + EL+E++PGPDFPTG I+G GI AY+TGRG IT+R K
Sbjct: 187 QLGEVIDGVLALSENPELDIAELMEFIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+++E + K + +++ EIPYQ NK+ L+EKIAELV +K ++GI+D+RDESDR G+RIV
Sbjct: 247 SDIEEHNGKPR---IVVSEIPYQVNKAKLIEKIAELVRDKKIEGITDLRDESDRDGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + ++++N+LY+ T+LQ+SF N++ ++DG+PK + LKE L+ +L + V+ R
Sbjct: 304 IELRRDVNANVLLNNLYKQTSLQTSFGINLLALVDGRPKVLNLKECLEEYLKHQVEVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD++D +I ++R + + A L + F+LS +QA AI
Sbjct: 364 RTSFELRKAEARAHILEGLRIALDHIDEIISLIRGSQTTDLARNGLMENFQLSYEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR- 561
LDM L+RLT LER K E + L+ +I +L+ +L+ + +L++I +E++E+K +++ R
Sbjct: 424 LDMRLQRLTGLERDKIESEYQELLARIAELKAILADDEKVLEIIREELLEIKAKYNDERR 483
Query: 562 --LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
+SM ED Q +D D+IP +++ ++ GY+KR+ +T+ Q RG G
Sbjct: 484 TIISMNED----QFEDEDLIPRQNLVITLTHNGYIKRLPISTYRSQKRGGKGIQGMGTND 539
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
ND +S H +L+FS++G VY + Y+IPE R A G P++ +L + E I+++
Sbjct: 540 NDFVSHLFTTNTHHTILFFSNKGKVYRLKGYEIPELGRTAKGIPIINLLQIDSDEYISTV 599
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IP+ EF D+FL LT +G K+ L+ F++IR G+ AI L DEL VR D +
Sbjct: 600 IPIEEFKDDEFLFFLTKHGIAKRTQLSSFANIRKGGLFAINLRDEDELHGVRLTNGDREI 659
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++NGM I D +R + R G + L D D + MDII
Sbjct: 660 IIGTKNGMAIRFHEDDVRLMGRTAGGVKGISLNDDDYVVGMDII---------------- 703
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSL 858
G +L V+E G+GKR P+ +R + G G K S D+ + +V +
Sbjct: 704 -----EEGHQVLIVTEKGYGKRTPIEEYR---IQNRGGKGIKTSNITDKNGS--LVSLKI 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D D +++++ SG + R +V ISI R +GV ++R++ ++ + + + + + E
Sbjct: 754 VSD---DHDIMIITVSGVIIRTQVEGISITGRNTQGVKVIRIDEGEEVATVARVEIEDEE 810
>gi|397905912|ref|ZP_10506746.1| DNA gyrase subunit A [Caloramator australicus RC3]
gi|397161080|emb|CCJ34081.1| DNA gyrase subunit A [Caloramator australicus RC3]
Length = 809
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/832 (43%), Positives = 541/832 (65%), Gaps = 33/832 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++ +EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++MHELGL K ++KCAR+V
Sbjct: 10 VDISDEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLFPDKQYRKCARIV 69
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+VLGK+HPHGD+AVY+++VR+AQDFS RYPL+ GHGNFGSID D AAAMRYTE RL +
Sbjct: 70 GDVLGKYHPHGDSAVYEAMVRLAQDFSTRYPLVDGHGNFGSIDGDGAAAMRYTEARLSKI 129
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S ML DI+++T++F NFD ++KEP++LP+R P LL+NG+SGIAVGMATNIPPHNLGE
Sbjct: 130 SMEML-RDINKNTIDFADNFDGTEKEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNLGE 188
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D + LI NPEAT+++L+ + GPDFPT G+I+G GI +AY TGRG++ VR K +E
Sbjct: 189 VIDGVIMLIDNPEATIKDLMTKIKGPDFPTAGIIVGKDGIREAYETGRGKVVVRAKATIE 248
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ R +I+ EIPYQ NK+ LVE IAELV++K ++GISD+RDESDR GMRIVIELK
Sbjct: 249 ---EEKGRHKIIVTEIPYQVNKAKLVEDIAELVKDKKIEGISDLRDESDRQGMRIVIELK 305
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+P+IV+N LY+ T LQ SFS M+ +++G+PK + L+EVL +LDF+ V+ RR +F
Sbjct: 306 KDANPNIVLNLLYKHTKLQDSFSIIMLALVNGEPKVLNLREVLTHYLDFQKEVIRRRTKF 365
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LD++D VI ++R + + A L F LSEKQA AILDM
Sbjct: 366 ELDKAEARAHILEGLRIALDHIDEVINLIRSSKTVEDARNGLMTRFGLSEKQAQAILDMR 425
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER K +E L++ I L E+L + + +LQ+I+ E++E+K +++ R + +
Sbjct: 426 LQRLTGLERAKIDEEYSELIKTINYLREVLENERLVLQIIKDELLEIKEKYADERRTKIT 485
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
A S +++ D+I +E+ + I+ GY+KR+ +T+ Q RG G +R +D +
Sbjct: 486 -AKSDEINIEDLIQEEEVAITITHAGYIKRIPIDTYRSQKRGGKGVQGMSMREDDFVEHI 544
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ H ++++F++ G Y +AY+IPE +R A G +V IL+++ E+I +++ + EF
Sbjct: 545 FITSTHSYIMFFTNLGRAYMLKAYEIPEASRTARGMNIVNILAMNPREKIQAVLEIKEFD 604
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
D+FL T G +KK L+ F++IR G+ AI L GDEL V+ + + +QNG
Sbjct: 605 EDKFLFFATKLGIVKKTFLSEFANIRKNGLNAINLKVGDELIGVKLTDGKQKIMIVTQNG 664
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I + +R + R G + L++GD M++ +
Sbjct: 665 YCITFEEEDVRVMGRTAAGVKGITLREGDIAVGMEVY---------------------NE 703
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
LL VSE+G+GKR + + G+ YK + D+ +VG E+DE
Sbjct: 704 NSDLLVVSENGYGKRTKCTEYTVHSRGGKGMKTYKVN--DKTGK--IVGVKTVR--ENDE 757
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
V+L++ +G + R++V I R A GV LM+ + +I S I+ + E
Sbjct: 758 -VMLINNNGIIIRLEVSTIKQTGRDAMGVTLMKTQEDERIVSIGKINSNDEE 808
>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
Length = 836
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/853 (43%), Positives = 547/853 (64%), Gaps = 32/853 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR LFAM+++ KP+KK AR
Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD+LVRMAQDFSLRYPL+ G GNFGSID D AAMRYTE R+E
Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLADID++TV + PN+D+S KEP +LP++ P LL+NG++GIAVGMATNIPPHNL
Sbjct: 128 QLAHE-LLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D + A+I NP+ T +EL+E +PGPDFPTGG I G GI+ AY TGRG I +R K +
Sbjct: 187 SEVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQ 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E K++R +++ EIPYQ NK+ LVEKIAELV+ K ++GISD+RDESDR GMR+VIE
Sbjct: 247 IET-QKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P+I++N LY+ T +QSSF M+ I++ +P+ + L+E + F++ R +V RR
Sbjct: 306 LKKDENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRT 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F L + + R HI+EG+ + LDNLD VI +++ + S + A A L + F LS+ QA AILD
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAILD 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS- 563
M L RLT LER+K ++E + +++ I +L+E+L+S IL++I E++ELK++F R S
Sbjct: 426 MRLHRLTGLEREKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDKRRSE 485
Query: 564 -MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ AD + D I ++M++ IS GY+KR + Q RG GK+ K + D
Sbjct: 486 IVMQTAD---ISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + D++++F+D G VY + Y+IPE R A G +V +L+L+ E+IT+I+PV
Sbjct: 543 VEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITTILPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+F++M T NG +KK ++ +S R GIIA+ L GD+L V V +A
Sbjct: 603 KEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG I + +R++ R +RG M L+ D + M+I+ + N
Sbjct: 663 SANGKAIRFKEEDVRTVGRVSRGVRGMTLEGEDVVIGMEIL---------------NENF 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S+ + V+E+G+GKR +S +R G+I K + + VV D
Sbjct: 708 TDST---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNG----NVVDIKQVND- 759
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
D ++L++ G + R+ V SI R +GV LM E + ++ + + ++ E + +
Sbjct: 760 --DNDLMLITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESE 817
Query: 923 LPSTSDKLATESG 935
+ + ESG
Sbjct: 818 DGELDEMVELESG 830
>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
Length = 824
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/857 (43%), Positives = 541/857 (63%), Gaps = 42/857 (4%)
Query: 60 LASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKP 119
L K E+ +G G R+VPV + +EM SYI YSMSV++GRALPD RDGLKP
Sbjct: 10 LDEKIEQHDGEGG----------RVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKP 59
Query: 120 VHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLI 179
VHRRIL +M+E G++ K +KK ARVVG+VLGKFHPHGD AVYDSLVRM QDFSLRYPLI
Sbjct: 60 VHRRILHSMNEAGITHDKAYKKSARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLI 119
Query: 180 RGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPAR 239
G GNFGS+D D AAAMRYTE R++ ++ ML DI + TV+F PN+D S +EP +LP++
Sbjct: 120 DGQGNFGSVDGDSAAAMRYTEVRMDKITTEML-EDIKKGTVDFKPNYDGSLEEPEVLPSK 178
Query: 240 LPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGL 299
LP LLLNG++GIAVGMATN+ PHNLGE+VD LI +PE L EL + + GPDFPTGG+
Sbjct: 179 LPNLLLNGSTGIAVGMATNMAPHNLGEVVDATVKLIDDPETELAELRKIVKGPDFPTGGI 238
Query: 300 IMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELV 359
IMG GI AY TGR I +R TE+E + K+ + +++ E+PYQ NK+ LVE IA LV
Sbjct: 239 IMGTSGIKSAYETGRSPIYLRAVTEIEEM--KNDKYRIVVYELPYQVNKARLVESIANLV 296
Query: 360 ENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ 419
+K ++GISD+RDES R GMR+VIELK+ A+P +++N LY+ T L+++F + ++DG
Sbjct: 297 RDKKIEGISDLRDESGREGMRVVIELKKAANPKVLLNQLYKQTQLETTFGIINLALVDGV 356
Query: 420 PKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAP 479
P+ + L+E++Q +L R V+ RR F L + +ER HI++G+ V LDN+D VI+++R +
Sbjct: 357 PRVLNLRELIQIYLKHRIDVISRRTVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSS 416
Query: 480 SNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
+ A L F L E QA AILDM L+RLT LER+K +E L++ I L+++L++
Sbjct: 417 TTEEAREGLISNFDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLIDTIADLKDILAND 476
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
+ +I EV+ELK+++ R ++++ + +L D D+IP +E+++ ++ GY+K +
Sbjct: 477 ERKYAIIRDEVLELKDKYGDERRTLIQSSRE-ELADEDLIPEEEVVVTSTQSGYIKNIPL 535
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
T+N+Q+RG G + + +D + V HD++L+F++RG VY + Y IP +R +
Sbjct: 536 QTYNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRGSRQS 595
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G +V +L L++GE + ++IPV +F D++L M T +G +K+ SL+ FS+ R GIIAI
Sbjct: 596 RGKAIVNLLELAEGESVNAMIPVHDFENDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIAI 655
Query: 720 QLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMAS 779
L GDEL V + + +AS++G + S + +R + R RG M+L D + S
Sbjct: 656 SLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVMGRTARGVRGMKLAGPDVIVS 715
Query: 780 MDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
+D++ S LL V+E+G GKR P +R L G+I
Sbjct: 716 LDVV---------------------DSDGTLLTVTENGFGKRTPFDEYRTLRRGGQGVI- 753
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ R V V E D++++L S +G V RI V DI +Q R +GV +M
Sbjct: 754 -TIFTDMRNGPVVTVKTV-----EDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMN 807
Query: 900 LELSGKIQSASLISVTE 916
+ K+ S + I E
Sbjct: 808 IREKDKLVSLARIKKEE 824
>gi|410672048|ref|YP_006924419.1| DNA gyrase subunit A [Methanolobus psychrophilus R15]
gi|409171176|gb|AFV25051.1| DNA gyrase subunit A [Methanolobus psychrophilus R15]
Length = 844
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/834 (44%), Positives = 546/834 (65%), Gaps = 32/834 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+ +IVP+ + +EM SYI Y+MSV++GRALPD RDGLKPVHRRIL+AM E G++S KP
Sbjct: 38 DTGEKIVPILIEDEMRNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGITSDKP 97
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+VLGK+HPHGD AVYDSLVRM Q+FSLRYPLI G GNFGSID D AAAMRY
Sbjct: 98 YKKSARVVGDVLGKYHPHGDVAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMRY 157
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R++ +++ ML+ DID+DTV+ PN+D S +EP++LPA+LP LL+NG++GIAVGMATN
Sbjct: 158 TETRMDKIADEMLI-DIDKDTVSTRPNYDGSLQEPTVLPAKLPNLLVNGSTGIAVGMATN 216
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
+ PHNL E++D I NP+ ++ EL++ + GPDFPTG +I+G+ GI D+Y TGRG++
Sbjct: 217 MAPHNLTEVIDATLMQIDNPDVSVSELMKVIKGPDFPTGAVILGSQGIRDSYETGRGKVH 276
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R E+E + + + +I+ E+PYQ NK+ L+E IAELV +K L GISD+RDESDR G
Sbjct: 277 LRAVAEIEEI--RKDKNAIIVTELPYQVNKAKLIENIAELVRDKRLIGISDLRDESDRDG 334
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIEL R +P++V+N LY+ T +Q++F + ++D PK++ LK++L+ +L+ R
Sbjct: 335 IRVVIELTRTTNPNVVLNQLYKHTQMQTTFGIINLALVDNVPKELSLKDMLRIYLEHRIE 394
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+++R F+L + +ER HI+ G+ + LD+LD VI ++R + TA L F L E Q
Sbjct: 395 VIQKRTLFQLRKAEERAHILRGLKIALDHLDAVITLIRSSKDVETAREGLISNFGLDEIQ 454
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L++LT LER+K DE +++ I +LEE++ S + ++I E+ +LK RF
Sbjct: 455 AKAILDMRLQKLTGLERQKIEDEYNEILKLIAELEEIIKSDERKYEIIRSELADLKERFG 514
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + ++ +L+D D+IP++E+++ I+ GY+KR+ +T++ Q+RG G + +
Sbjct: 515 DERRTKIK-GSVMELEDEDLIPDEEVVITITNSGYIKRLLVDTYSQQHRGGKGIMGMETK 573
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D ++D V H+++L+F+ +G VY + Y+IPE +R + G +V +L LS+GE +T+
Sbjct: 574 DEDFVTDIFVASTHNYILFFTSKGRVYWQKVYEIPEGSRQSRGKAIVNLLELSEGESVTA 633
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IPVSEF+ D +L M T G +KK SL+ FS+ R GIIA+ L GDEL V
Sbjct: 634 MIPVSEFSEDSYLFMATRMGTVKKSSLSDFSNPRKAGIIALNLDEGDELVNVALTDGSKE 693
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M S++G I S +R + R+ RG MRL+ GD + S+D++ ++S
Sbjct: 694 MVMVSRHGKAIRFSEADVRPMGRSARGVRGMRLEPGDLVVSLDVV------------DES 741
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
S LL V+E+G GKR +R L G+I S L V+
Sbjct: 742 AS---------LLTVTENGFGKRTEFGEYRTLHRGGQGVITIVTS----LRNGPVMNVKA 788
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+D ++++L S G + RI V+DI IQ R +GV +M + K+ + I
Sbjct: 789 VKD---TDEIMLTSSEGIIIRIPVKDIRIQGRNTQGVKIMDVRQKDKVVGVARI 839
>gi|83588882|ref|YP_428891.1| DNA gyrase subunit A [Moorella thermoacetica ATCC 39073]
gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
Length = 814
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/834 (44%), Positives = 532/834 (63%), Gaps = 34/834 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +I+PV L EEM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E GL+ KP+K
Sbjct: 14 SGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYK 73
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVG VL ++HPHGD AVY+++VR+AQDF+ RYPLI GHGNFGS+D D AAMRYTE
Sbjct: 74 KSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTE 133
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL L+ ML ADID+DTV+FV N+D S KEP +LPAR+P LL+NG++GIAVGMATNIP
Sbjct: 134 ARLSKLALTML-ADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIP 192
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D L LI P+A L+E+ + + GPDFPT GLI+G GI +AYRTGRG I VR
Sbjct: 193 PHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKVR 252
Query: 321 GKTEVELL-DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
K +VE L + KS+ +++ EIPYQ NK+ LV+ I +LV K +DGI D+RDESDR+GM
Sbjct: 253 AKAQVETLSNGKSQ---IVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGM 309
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIEL+R P +++N LY+ T +Q +F M+ ++DG+P+ + L+E+L +LD + V
Sbjct: 310 RIVIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEV 369
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR R+ L+Q + R HIV G+ + + LD VIRI+R+AP+ A L + F+LS+KQA
Sbjct: 370 ITRRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMERFQLSDKQA 429
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AI+DM L RLT LER+K +E + L ++I +E+L+S + ++ E++E+K +F+
Sbjct: 430 KAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRDELLEIKRKFAD 489
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
PR + + + L+ D+I +++++ ++ +GY+KR +T+ Q RG G R
Sbjct: 490 PRRTQIVLEEE-NLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGTRE 548
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + D V H ++L+F+++G V+ R ++IPE R A GTPLV +L L+ GE IT++
Sbjct: 549 EDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETITAV 608
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IP+ E D +L+M T G +KK SL + + R G++AI L D+L V ++ V
Sbjct: 609 IPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEGNNEV 668
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++ G I D +R + R RG + L D D + +
Sbjct: 669 MLVTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMVVGL------------------- 709
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
VK L+ VSE G GKR L +R P R G + DR V V
Sbjct: 710 --VKVREDAELVVVSERGFGKRTTLEEYR--PQGRGGKGIITMNVTDRTGPVAAVAVVKL 765
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
ED +++L+S G + R+ V DIS Q R +GV LMRLE S ++ + + I
Sbjct: 766 ED-----ELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARIQ 814
>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
51172]
gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
51172]
Length = 815
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/817 (44%), Positives = 532/817 (65%), Gaps = 32/817 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ ++L ++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M +LGL KP +K A
Sbjct: 7 IINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPTRKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GKFHPHGD+A+YD+LVR+AQDFS RYPL +G GNFGSID D AAAMRYTE R+
Sbjct: 67 RVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYTEVRM 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI +DTV+F+PNFD + EPS+LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 127 SKIAKEML-RDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMAPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D A + NPE ++ +L++++PGPDFPTG LI+G GI +AY TGRG+I R
Sbjct: 186 LGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQRAVC 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E K R +II EIPYQ NK+ L+EKIA+LV+ K +DGISDIRDESDR GMRIV+
Sbjct: 246 RIEPF--KKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIVV 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR ++ +IV+N+LY+ T L+++F + ++ G+PK + LKE+++ ++D + VV RR
Sbjct: 304 EIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F LS+ +ER+HIVEG+++ +D++D +I+I+R + N D +KLS+ Q+ AIL
Sbjct: 364 TNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDRYKLSDAQSQAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE +K E+K L + I L +L+S +N++ LI E+ E+K ++S R +
Sbjct: 424 DMQLKRLSGLEIEKLNAENKELADTIEYLLSILNSEENLINLIIDEITEIKEKYSDERRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G++D ++I +++L+ +++ GY+KR+ +T+ +QNRG G + G + D +
Sbjct: 484 KIV-PDEGEIDITELIEEEDILINLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFI 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
I H+ +L+F+ G VYS AYKIPE +R + G ++ IL+L GE+IT ++ +S
Sbjct: 543 KKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSRTSRGQAIINILNLETGEKITEMMTLS 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E + + LV+ T G IKK F++IR GIIAI L D+L VR D+ + +++
Sbjct: 603 ELSKNSQLVLQTQQGQIKKTDAENFTNIRRNGIIAISLKDWDKLISVRQIDKDEELIIST 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
QNGM I + +RS+ R+ G A+RL D + SM N+K
Sbjct: 663 QNGMTIQFNTKDVRSMGRSAVGVRAIRLDKDDAVVSM--------------------NIK 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G +LL V+E+G GK+ S+F+ G+ +K S E V + L
Sbjct: 703 GEE-TYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVS-EKTGKVVDTLPVDL----- 755
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D +++VS G + R+ RD+S R GV L L
Sbjct: 756 -DTDIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNL 791
>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
Length = 815
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/833 (42%), Positives = 544/833 (65%), Gaps = 32/833 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 9 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +SE ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKISE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+ T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 188 NMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 248 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M L+ VL ++ + +V+ R
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL + FKL+EKQA AI
Sbjct: 366 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K E + ++ I + + +L+ R +L +I+ E+IE+++++ R
Sbjct: 426 LDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYGDERR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 486 TEIT-FDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDV 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I V
Sbjct: 545 VSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 605 REFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I D +RS+ R RG + L DGD++ +MDI+
Sbjct: 665 TRLGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDIL------------------- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
SG +L V+E G+GKR +R GLI K + + VVG +
Sbjct: 706 --KSGSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEK----TGPVVGIRVV--- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
++++L++ G V R V +IS+ +R +GV LM + + ++ S + +++T
Sbjct: 757 RGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMT 809
>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
Length = 763
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/761 (45%), Positives = 512/761 (67%), Gaps = 26/761 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++++EM YI Y+MSV++GRALPDVRDGLKPVHRRIL++M ELGL + ++KC
Sbjct: 7 KVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+LVRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFD +KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MNKIASEML-RDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T EL+ Y+ GPDFPT G+IMG GI AY TG+GRI VR K
Sbjct: 186 NLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E ++ R +I+ E+PYQ NK+ L+E IA+LV++K + GISD+RDESDR GMR+V
Sbjct: 246 AEIE---EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++ +N LY+ T +Q +F M+ ++D QP+ + LK+VL +++F+ V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ KER HI+EG+++ LDN+D VI I+R + ++ A L + F LSEKQA AI
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQAAAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K +E LM+ I L +L+S + +L++I++E++E+K ++S R
Sbjct: 423 LEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E ++ ++D D+I +++++ ++ GY+KR+ + ++ Q RG G + +D
Sbjct: 483 TQIEKQEN-EIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H ++L+F+ +G VY +AY++P+ R A GT LV IL L E+I +++
Sbjct: 542 VENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSF 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ D +L M T G +KK L F +IR G+IA+ L GDEL + D +
Sbjct: 602 KDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+Q+G I + +R + R G A+ L++GD MDI ED
Sbjct: 662 TQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDI-----------AVEDEK--- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843
LL VSE+G+GKR L ++ +GLI YK S
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS 741
>gi|403382764|ref|ZP_10924821.1| DNA gyrase subunit A [Paenibacillus sp. JC66]
Length = 864
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/842 (42%), Positives = 547/842 (64%), Gaps = 35/842 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+ PRI ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+
Sbjct: 5 IQPRIKNRDIGSEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPY 64
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VGEV+GK+HPHGD+AVY+S+VRMAQDFSLRY L+ GHGNFGSID D AAAMRYT
Sbjct: 65 KKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSLRYMLVDGHGNFGSIDGDSAAAMRYT 124
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E RL ++ LL DI+++T++F PN+D + EP +LP+R P LL+NG SGIAVGMAT I
Sbjct: 125 EARLSKMA-MELLRDINKETIDFGPNYDGEESEPVVLPSRFPNLLVNGISGIAVGMATAI 183
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPH LGE++D + ALI NP+ T EL++Y+ GPDFPTGG I+G GI AY TGRG +T+
Sbjct: 184 PPHQLGEVIDGIQALIENPDITPMELMQYIKGPDFPTGGYILGREGIRQAYTTGRGSVTM 243
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + E+E + K++ +I+ E+PYQ K+ L+ IAELV +K +DGI+D+RDESDR+GM
Sbjct: 244 RARAEIEENNGKAR---IIVSELPYQVIKTRLIVSIAELVRDKKIDGITDLRDESDRNGM 300
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIEL++ A+PS+V+N+LY+ TALQ++F M+ +++ +PK + LKEVL +L + V
Sbjct: 301 RIVIELRKDANPSVVLNNLYKHTALQTNFGIIMLALVNKEPKILNLKEVLHYYLLHQQEV 360
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR F L + + R HI+EG+ + LD+LDRVI ++R + + A L ++F+LS +QA
Sbjct: 361 IRRRTEFDLRKAEARAHILEGLRIALDHLDRVISLIRSSRTTEIAREGLMEQFQLSHEQA 420
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L+RLT LER+K +E L+++I +L+ +L+ K IL +I +E+ E+K RF+
Sbjct: 421 QAILDMRLQRLTGLEREKIEEEYAELVKRIAELKAILADEKLILNIISEELNEIKERFND 480
Query: 560 PRLSMLE-DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + DS ++D D+IP +++++ I+ GY+KR+ NT+ Q RG G +
Sbjct: 481 ERRTEITIGLDS--IEDEDLIPREDVVITITHSGYIKRLPINTYRAQRRGGRGVVGMDTK 538
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
ND + V H ++L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE + +
Sbjct: 539 DNDFVEHLFVSNTHQYLLFFTDKGKVYRLKAYEIPDLSRIARGTPIINLIQIEQGETVNA 598
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IPV F D FL T G +KK L +S+IR G+IAI L D L V+ D
Sbjct: 599 VIPVESFESDHFLFFATKQGIVKKTPLTDYSNIRKGGLIAINLREDDTLIGVKLTDGDQA 658
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M ++ G+ I +RS+ R+ G ++L D D++ MD++ PE+
Sbjct: 659 IIMGTRQGLSIHFPEREVRSMGRSATGVKGIQLTDDDQVIDMDVV----------HPEND 708
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L V+ G+GKR P+S +R G+ ++++ V+G +
Sbjct: 709 -----------VLIVTSRGYGKRTPISEYRVQSRGGKGIKTLNMTSKNG----EVIGLKV 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D DE +++++ GT+ R + +SI R +GV L+ ++ ++ + S + ++ E
Sbjct: 754 VRD---DEDLMVMTAQGTIIRTSMAGVSIMGRNTQGVRLINIKDDDEVATVSPVEKSDEE 810
Query: 919 TD 920
D
Sbjct: 811 LD 812
>gi|397690040|ref|YP_006527294.1| DNA gyrase subunit A [Melioribacter roseus P3M]
gi|395811532|gb|AFN74281.1| DNA gyrase subunit A [Melioribacter roseus P3M]
Length = 812
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/835 (43%), Positives = 538/835 (64%), Gaps = 34/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVP+ L EEM SYI Y+MSV++ RALPDVRDGLKPVHRR+LF MHELGL+ KP+KK
Sbjct: 7 KIVPITLEEEMKSSYIDYAMSVIVARALPDVRDGLKPVHRRVLFGMHELGLTYNKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD+AVYD++VRM QDFSLRYPL+ G GNFGS+D D AAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSAVYDTMVRMVQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +SE ML D+D++TV+FVPNFD++ +EPS+LPA LP LL+NGASGIAVGMATNIPPH
Sbjct: 127 LARISEEML-RDLDKNTVDFVPNFDDTLQEPSVLPAYLPNLLVNGASGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L ALI NP+ T +++++++ PDFPTGG+I G G+ +AY TGRG+IT+R +
Sbjct: 186 NLSEVIDGLIALIDNPKITPEDIMKHIKAPDFPTGGIIYGYEGVREAYLTGRGKITIRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K+ R ++I E+PYQ NK+ L+EKIA+LV N+ ++GIS+IRDESDR GMRIV
Sbjct: 246 ANIETL--KNDRENIVITELPYQVNKASLIEKIADLVRNQKIEGISNIRDESDRDGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+KR P++ +N L++ T +Q +F M+ +++G PK + LK+ ++ FLD R V+ R
Sbjct: 304 IEMKRDGQPAVTLNQLFKHTQMQVTFGVIMLALVNGVPKVLTLKQTMEHFLDHRMDVLIR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + R HI+EG ++ LDN+D VI ++++ TA L +FKLSE QA AI
Sbjct: 364 RTKFELDAAERRAHILEGYIIALDNIDEVIETIKKSRDVETAKRNLMRKFKLSEIQAKAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LERKK DE K ++ I KL+ +L+S K Q+I++E++ LK R+ R
Sbjct: 424 LDMRLQRLTGLERKKIEDEYKETIKLIEKLKGILASEKKRKQIIKEELLALKERYGDERR 483
Query: 563 S-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ D L+ DII +++++ IS +G++KR + + Q+RG G + + D
Sbjct: 484 TEIIYDYKDFSLE--DIIAEEDVVVTISHRGFIKRFPVSGYRRQSRGGKGVTGAGTKDED 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ V H ++++F+D+G Y + ++IPE R A G ++ ++ S E+I + +
Sbjct: 542 FIEHMFVASTHHYIMFFTDKGKCYWLKVHEIPEGGRTAKGRSILNLIEKSKEEKIAAFVA 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF+ D+++VM+T G IKK L+ +S+IR GI AI L GD L + ++ + +
Sbjct: 602 VKEFSDDKYVVMVTEKGTIKKTVLSAYSNIRRGGINAINLADGDNLVEAKLSDGNNDIII 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++NGM I + +R + R G + L DK+ M ++ A
Sbjct: 662 GTRNGMAIRFNEKDVRDMGRTATGVRGINLAKDDKVIGMIVVRNA--------------- 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
LL V+ G+GKR L +R G+I K S ++ ++ E
Sbjct: 707 ------STLLVVTNKGYGKRSELDDYRLTRRGGKGIITIKTSEKNGKM------IAMKEV 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++DE +V+++ G V R V+DI I R +GV L++L +I + ++ E
Sbjct: 755 NDTDE-LVIITTKGMVIRQAVKDIRIMGRNTQGVRLIKLNEGDEIADIARVAPEE 808
>gi|435851214|ref|YP_007312800.1| DNA gyrase, A subunit [Methanomethylovorans hollandica DSM 15978]
gi|433661844|gb|AGB49270.1| DNA gyrase, A subunit [Methanomethylovorans hollandica DSM 15978]
Length = 831
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/861 (43%), Positives = 550/861 (63%), Gaps = 37/861 (4%)
Query: 60 LASKDEERNG--NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGL 117
+A ++E NG + + +IVPV + EEM SYI Y+MSV++GRALPD RDGL
Sbjct: 1 MADDNKENNGMDENPLGIQPTDTGEKIVPVLIEEEMKNSYIDYAMSVIVGRALPDARDGL 60
Query: 118 KPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYP 177
KPVHRRIL+AM+E G++ KP+KK ARVVG+VLGK+HPHGD+AVY+S+VRM Q+FSLRYP
Sbjct: 61 KPVHRRILYAMYEAGITHDKPYKKSARVVGDVLGKYHPHGDSAVYESIVRMVQEFSLRYP 120
Query: 178 LIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLP 237
LI G GNFGSID D AAAMRYTE R+ +S+ ML D+D+ TV PN+D S +EPS+LP
Sbjct: 121 LIDGQGNFGSIDGDSAAAMRYTEARMSKISDEML-QDLDKGTVLMNPNYDGSMEEPSVLP 179
Query: 238 ARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTG 297
A+LP LL+NG++GIAVGMATN+ PHNLGE+VD LI NP +T+ +L+ + GPDFPTG
Sbjct: 180 AKLPNLLINGSTGIAVGMATNMAPHNLGEVVDATLMLIENPSSTIHDLMTVVRGPDFPTG 239
Query: 298 GLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAE 357
G I+G GI +AY TGRGRI +R +E + + + +I+ EIPYQ NKS L+E IA
Sbjct: 240 GTILGMHGIREAYETGRGRIQLRAVAAIEEI--RKDKNAIIVTEIPYQVNKSKLIEDIAL 297
Query: 358 LVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILD 417
LV K + GISD+RDESDR G+R+VIE+ R ADP++V+N LY+ T +Q++F + ++D
Sbjct: 298 LVREKKIVGISDLRDESDRDGIRVVIEISRNADPNVVLNQLYKHTQMQTTFGIINLALVD 357
Query: 418 GQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVRE 477
P ++ LK +LQ +L+ R ++++R +F+L + +ER HI+ G+ + LD LD VI ++R
Sbjct: 358 NVPLELNLKRILQIYLEHRIDIIQKRTQFQLRKTEERAHILRGLKIALDQLDAVISLIRA 417
Query: 478 APSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + A + L F L E QA +ILDM L++LT LER+K DE + LM I + ++
Sbjct: 418 SATVEEARSGLVANFGLDEIQAKSILDMRLQKLTGLERQKVEDEYEELMRLIAEYLSIIG 477
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
S + ++I+ E+IELK +++ R + ++ A +LD D+IP +++++ I+ GYVKR+
Sbjct: 478 SDEKKYEMIKAELIELKQKYNNERRTQIK-ASHVELDLEDLIPQEDVIVTITNSGYVKRL 536
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+T++ Q+RG G + + D + + V +HD++++F+++G +Y + Y+IPE +R
Sbjct: 537 PVSTYSQQHRGGKGVIGMETKEEDFVENIFVASSHDYIMFFTNKGRLYWKKVYEIPEGSR 596
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717
+ G +V +L L +GE +T++IPV EF DQ+L M T +G +KK SL+ FS+ R GII
Sbjct: 597 QSKGKAIVNLLELGEGEYVTAMIPVKEFTDDQYLFMATRSGTVKKTSLSDFSNPRKGGII 656
Query: 718 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKM 777
A+ L+ DEL V V + S++G I S + +RS+ R+ +G ++L+ DK+
Sbjct: 657 AVTLLEDDELVNVALTDGSKDVVLVSRHGKAIRFSENDVRSMGRSAQGVRGIKLEQSDKV 716
Query: 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
S+D++ D HS LL ++E+G GKR +R + +G+
Sbjct: 717 VSLDVV-------------DEHST--------LLSITENGFGKRTEFGEYRTMRRGGMGV 755
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
I S R V V ED +V++ S G V RI V DI IQ R +GV +
Sbjct: 756 ITIVTSL--RNGPVVNVKAVREED-----EVMITSSEGIVIRIPVTDIRIQGRNTQGVKI 808
Query: 898 MRLELSGKIQSASLISVTEPE 918
M + K+ + I EPE
Sbjct: 809 MDVRQGDKVVGVARI---EPE 826
>gi|374605478|ref|ZP_09678405.1| DNA gyrase subunit A [Paenibacillus dendritiformis C454]
gi|374388929|gb|EHQ60324.1| DNA gyrase subunit A [Paenibacillus dendritiformis C454]
Length = 845
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/831 (43%), Positives = 540/831 (64%), Gaps = 35/831 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDG+KPVHRRIL+AM ELG++ KP+KK AR+VGEV+G
Sbjct: 17 EMRESFLDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDKPYKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE RL ++ L
Sbjct: 77 KYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDFAAAMRYTEARLSKIA-MEL 135
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
L DI++DTV+F PN+D + EP +LPAR P LL+NG SGIAVGMATNIPPHNL E++D +
Sbjct: 136 LRDINKDTVDFAPNYDGEETEPVVLPARFPNLLVNGVSGIAVGMATNIPPHNLTEVIDGI 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
ALI NPE T EL++Y+ GPDFPT GLI+G GI AY TGRG +T+R K +E + K
Sbjct: 196 QALIRNPEITPLELMDYIKGPDFPTAGLILGREGIRQAYMTGRGSVTMRAKATIEEHNGK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ E+PYQ NK+ LVEKIAELV K ++GI+D+RDESDR+GMRIVIEL+R +P
Sbjct: 256 AR---ILVHELPYQVNKAKLVEKIAELVREKRVEGITDLRDESDRNGMRIVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
S+V+N+LY+ TALQS+F NM+ +++ +P+ + L+E+L +L+ + V+ RR F L +
Sbjct: 313 SVVLNNLYKHTALQSNFGINMLALVNQEPRVLNLREMLYYYLEHQVEVIRRRTEFDLKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ V LD+LD VI ++R + + A L F+LS +QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRVALDHLDEVIALIRSSRTADIAREGLISRFQLSVEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E LM++I +L+E+L+S + +L +I E+ E+K +F R + + +
Sbjct: 433 GLEREKIEEEYAELMKKIAELKEILASEQLVLNIINDELEEVKQKFGDERRTEITIGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +++++ I+ GY+KR+ T+ Q RG G + ND + V +
Sbjct: 493 ILDE-DLIPQEDVIITITHSGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G VY +AY++P+ +R A GTP++ ++ + GE + ++IPV EF D+FL
Sbjct: 552 HHYLMFFTDKGKVYRIKAYEVPDLSRTARGTPIINLIQIEQGESVNAVIPVKEFEADKFL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T +G +KK L+ + +IR G+IAI L D+L VR + M + NGM I
Sbjct: 612 FFATRHGIVKKTPLDDYVNIRKGGLIAINLREDDDLIGVRLTDGKQEIIMGTSNGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + L D + MD++ ED+ +L
Sbjct: 672 PEKDVRSMGRSATGVKGITLDGDDFVIDMDVV-----------SEDND----------VL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAEDGESDEQVVL 870
VS G+GKR P+S +R + G G K + D+ VVG + + +E +++
Sbjct: 711 IVSSKGYGKRTPMSEYR---IQSRGGKGIKTINVTDKNGP--VVGLKVV---QPEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
++ GT+ R+ + IS RYA+GV L+ + + + S E + ++
Sbjct: 763 ITSLGTIIRMSMEGISQMGRYAQGVKLINIREDDSVATVSRCDKNEEQDEM 813
>gi|397780371|ref|YP_006544844.1| DNA gyrase subunit A [Methanoculleus bourgensis MS2]
gi|396938873|emb|CCJ36128.1| DNA gyrase subunit A [Methanoculleus bourgensis MS2]
Length = 811
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/821 (44%), Positives = 525/821 (63%), Gaps = 34/821 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S ++PV + EEM YI Y+MSV++GRA+PD RDGLKPVHRR L+AM ELG +S KP+K
Sbjct: 3 SDGVIPVNIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMRELGNTSDKPYK 62
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+A+YD+LV+MAQ FS RY L+ G GNFGSID D AAAMRYTE
Sbjct: 63 KSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDSAAAMRYTE 122
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL +SE LLADID++TV+FVPNFDES +EP +LPAR+P LL+NG+SGIAVGMATN+P
Sbjct: 123 ARLTKVSEE-LLADIDKETVDFVPNFDESLQEPDVLPARVPNLLVNGSSGIAVGMATNMP 181
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+ + C +I P + +EL+ MPGPDFPTGG+IMG G+ DAY TGRGR VR
Sbjct: 182 PHNLREVCEATCRIIDEPGISTEELMRIMPGPDFPTGGIIMGTEGVRDAYLTGRGRCVVR 241
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
G E+E + + +II EIP+Q NK+ L+E IA LV +K ++GISDIRDESDR GMR
Sbjct: 242 GIAEIE---EEGRTPQIIITEIPFQVNKARLIEHIANLVRDKRVEGISDIRDESDRDGMR 298
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVI+LK+G P +V+N LY+ TAL+S+F + I+D QP + LKE++ FL R VV
Sbjct: 299 IVIDLKKGVAPQVVLNYLYKHTALESTFGIINLAIVDRQPHTLNLKELIHEFLKHRVEVV 358
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR+ F L + +ER HI+ G++V LDN+D V+ +R + + A AL +F L E QAD
Sbjct: 359 RRRSEFDLRKTEERMHILRGLLVALDNIDAVVATIRASRTTDEAQTALVTKFALDEVQAD 418
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRL LE++K +DE L ++I +L +L+S +IL I +E++++ R+
Sbjct: 419 AILKMQLRRLAALEQQKILDERDALAKEIERLTGILASEASILAEIRKELVDISARYGDE 478
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A + LD D+I + ML++++ Y+KR+ +T+ Q RG G + +
Sbjct: 479 RRTRIGYA-TEALDKEDLIEDKPMLVSLTSSNYIKRIDLDTYRNQRRGGRGVIGMATKDD 537
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + V HD++L F+D+G VY + Y +PE R + G +V +L+L ER+T++I
Sbjct: 538 DGVENVFVANMHDYLLCFTDKGRVYWLKVYDLPEGQRTSKGKAVVNLLNLDGDERVTTVI 597
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF+ D +L T G + K++L+ FS R TGI AI L GDEL V+ + +
Sbjct: 598 PVREFSSDHYLFFATRGGTVAKMALDEFSRPRQTGINAINLRDGDELVDVKATDGEKELI 657
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ G + + +R++ RN G ++L+ GD + ++ ++ E+ H
Sbjct: 658 LTTRFGQSLRFHEEAVRAVRRNAMGVRGIKLRHGDTLQAISLV------------ENDH- 704
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
LL ++E G GKR FR +G+ A VVG
Sbjct: 705 ---------LLTITEQGFGKRTEFDEFRGHGRGTMGVRNIVVDAR----GGGVVGSRAVS 751
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D D++++++S SG V R KV +ISIQ R RGV +M+L+
Sbjct: 752 D---DDEIIVMSASGIVIRTKVEEISIQKRNTRGVRIMKLD 789
>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
Length = 836
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/838 (44%), Positives = 542/838 (64%), Gaps = 32/838 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR LFAM+++ KP+KK AR
Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD+LVRMAQDFSLRYPL+ G GNFGSID D AAMRYTE R+E
Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLAD++++TV + PN+D+S KEP +LP++ P LL+NG++GIAVGMATNIPPHNL
Sbjct: 128 QLAHE-LLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D + A+I NP+ T +EL+E +PGPDFPTGG I G GI+ AY TGRG I +R K +
Sbjct: 187 TEVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQ 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E K++R +++ EIPYQ NK+ LVEKIAELV+ K ++GISD+RDESDR GMRIVIE
Sbjct: 247 IET-QKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P+I++N LY+ T +QSSF M+ I++ +P+ + L+E + F++ R +V RR
Sbjct: 306 LKKDENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRT 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F L + + R HI+EG+ + LDNLD VI +++ + S + A A L + F LS+ QA AILD
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAILD 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS- 563
M L RLT LER K ++E + +++ I +L+E+L+S IL++I E++ELK++F R S
Sbjct: 426 MRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDKRRSE 485
Query: 564 -MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ AD + D I ++M++ IS GY+KR + Q RG GK+ K + D
Sbjct: 486 IVMQTAD---ISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + D++++F+D G VY + Y+IPE R A G +V +L+L+ E+IT+I+PV
Sbjct: 543 VEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITTILPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+F++M T NG +KK ++ +S R GIIA+ L GD+L V V +A
Sbjct: 603 KEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDGKQDVLLA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG I + +R++ R +RG M L+D D + M+I+ + N
Sbjct: 663 SANGKAIRFKEEDVRTVGRVSRGVRGMTLEDEDVVIGMEIL---------------NENF 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S+ + V+E+G+GKR +S +R G+I K + + VV D
Sbjct: 708 TDST---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNG----NVVDIKQVND- 759
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D ++L++ G + R+ V SI R +GV LM E + ++ + + ++ E + +
Sbjct: 760 --DNDLMLITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDE 815
>gi|333895871|ref|YP_004469745.1| DNA gyrase subunit A [Thermoanaerobacterium xylanolyticum LX-11]
gi|333111136|gb|AEF16073.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
Length = 812
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/839 (43%), Positives = 544/839 (64%), Gaps = 35/839 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N R++PV++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ LGL+ KP
Sbjct: 7 NEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKP 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK VVGEVLGK+HPHGD AVYD++VRMAQDFS+R L+ GHGNFGSID DPAAAMRY
Sbjct: 67 YKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATN
Sbjct: 127 TEARLSKIALEML-TDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAVGMATN 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + A I NP EL+ Y+ GPDFPTGGLI+G GI + Y TGRG+I
Sbjct: 186 IPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRETYETGRGKII 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E + +++ +++ E+PY KS LVEKIAELV +K ++GISD+RDESDR+G
Sbjct: 246 VRAKAEIEEHNGRNR---IVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR +P +V+N LY T +Q +F M+ ++DG PK + L ++++ ++D +
Sbjct: 303 MRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVD 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + +ER HI+EG+ + LD++D VI ++R + + A L D+F LS++Q
Sbjct: 363 VITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDKFGLSDRQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+DM L RLT LER+K DE L ++I +L+ +LS K +L +I++E+ ++K+++S
Sbjct: 423 AQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSILSDEKKVLDIIKKELKDVKDKYS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+ R + + A ++D D++ ++ ++ ++ GY+KRM + + Q RG G S R
Sbjct: 483 SGRRTHIV-AKEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKAQKRGGKGISGISTR 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + HD +L+F+++G VYS R IPE R A GT ++ ++ + E++ +
Sbjct: 542 EDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIINLIQIDQDEKVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ + +++VM T NG IKK ++ F I+ +G AI+L GDEL V +
Sbjct: 602 VIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLDDGDELINVMLTDGNRE 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NG I D +R + R RG +A+ L+D D + MD++ +R +
Sbjct: 662 IIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVEMDLV--------DRDKD-- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+E+G+GKR + +R G+I K + + +L ++ V
Sbjct: 712 -----------ILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITKKTGKLVSIMSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
E DE ++++S +G + R K+ DIS R GV+LM+L+ ++ S + I+ E
Sbjct: 758 ----SEKDE-LMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIANDE 811
>gi|402570645|ref|YP_006619988.1| DNA gyrase subunit A [Desulfosporosinus meridiei DSM 13257]
gi|402251842|gb|AFQ42117.1| DNA gyrase subunit A [Desulfosporosinus meridiei DSM 13257]
Length = 826
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/817 (42%), Positives = 537/817 (65%), Gaps = 31/817 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VPVE+ +EM S+I YSMSV++ RALPDVRDGLKPVHRRIL+ +HELGL+ KP+ K
Sbjct: 9 KVVPVEIADEMRKSFIDYSMSVIVSRALPDVRDGLKPVHRRILYTLHELGLTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+ QDF+ RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLEQDFASRYPLVDGHGNFGSIDGDSAAAMRYTELR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS ML DID+DT++F PN+DE Q EP++LPA+ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MAKLSTYML-EDIDKDTIDFTPNYDEKQDEPTVLPAKFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+V+ AL+ +P ++ +L++Y+ GPDFPTGG IMG+ GI AY TGRG + +R K
Sbjct: 188 NLGEVVNATVALLDDPNLSIDDLIKYIQGPDFPTGGTIMGHEGIRSAYLTGRGSVKIRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E ++ K+ + +++ EIP+ NK+ ++EKIAELV +K +DGI+D+RDESDRSG+R+V
Sbjct: 248 AQIEQME-KAGKTRIVVTEIPFMVNKARMIEKIAELVRDKKIDGITDLRDESDRSGLRVV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P +++N LY+ T L+ +F NM+ +++GQP+ + LK+++ F++ + VV R
Sbjct: 307 IELRRDVNPKVILNQLYKHTQLEDTFGVNMLALVNGQPRTLTLKDMIYHFIEHQKDVVVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R++L++ + HI+EG+ + LD++D VI +R +P S A L F LS+KQA AI
Sbjct: 367 RTRYELNKAEAEAHIIEGLRIALDHIDEVIETIRSSPDESRARENLSLRFGLSDKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER K ++ K LM+ I L+ +L+S ++ +I++++ E+KN+F PR
Sbjct: 427 VDMRLKRLTGLERDKLENQYKELMDTIAYLKSVLASEAKVIGIIKEKLEEIKNKFGDPRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D ++D D+I +++++ ++ GY+KR+ +T+ QNRG G + D
Sbjct: 487 TQIT-LDVSKMDIEDLIAVEDVVITVTHYGYIKRLPLSTYKSQNRGGKGVHGMATKEEDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ H ++L+F+ +G VY +A++IPE +R GT ++ +L+L E IT+++ +
Sbjct: 546 VEHLFTTTTHHYILFFTSQGKVYRLKAHEIPEASRTGKGTAIINLLNLEQNEMITAVMAI 605
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
E++ D FL+ T G +KK +L + S R G+IA+ L GDEL V+ D + +A
Sbjct: 606 KEYSPDYFLITATKKGIMKKTALQEYDSSRKDGLIALTLDEGDELIGVKLTQGLDDILLA 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NG+ I +R + R RG + L D + MD+I
Sbjct: 666 TKNGIAIRFPESDVRYMGRTARGVKGITLAANDLVVGMDVI------------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G G LL +SE+G KR L FR G+I K +++ +VG +
Sbjct: 707 -GDEGE-LLTMSENGFAKRTNLKEFRVQGRGGRGVIVMKLNSK----TGTLVGLKVV--- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ ++++++++ +G + RI V IS Q R A+GV+ MR
Sbjct: 758 QVEDELMVITNNGIMLRIPVSSISNQGRSAQGVMAMR 794
>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
Length = 820
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/833 (43%), Positives = 547/833 (65%), Gaps = 36/833 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ +E+ S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AM+E G++ KP+KK +
Sbjct: 10 ILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGKFHPHGD AVY++LVR+AQDFS RYPLI GHGNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A++ LL DI+++TV+F+PN+DE ++EP +LP+R P LL+NG+SGIAVGMATNIPPHN
Sbjct: 130 SAIA-LELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D + LI NP+ATL +L+ + GPDFPTGG+I+G GI AY TGRG ITVR T
Sbjct: 189 LREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGSITVRAVT 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E L R +++ EIPYQ NK+ +VEKIAEL K +DGI+D+RDESDR GMR+VI
Sbjct: 249 HFEELSGGKTR--IVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+R P +V+N+L++ TALQ+SF + +++G+PK + L+E L+ +L+ + VV RR
Sbjct: 307 ELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRDVVRRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++ L++ + R HI+EG+ + LD+LD VI ++R + + A L F LSE+QA AIL
Sbjct: 367 TQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAIL 426
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K E + L+++I +L+ +L+ K + +I QE++E+K RF R +
Sbjct: 427 DMRLQRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEIKERFGDDRRT 486
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ +A+ G++ + D+IP ++++AI+ +GY+KR+ +T++ Q RG G ++ D +
Sbjct: 487 RIVNAE-GEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQRRGGRGMTLINAHEEDFV 545
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD++L+F++RG +Y+ +AY +PE R A GTP+V +L++ GE++T++IPV
Sbjct: 546 TGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVK 605
Query: 684 EF----AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
GD +L T G +KK L +S++R G+IAI L D+L V+ +
Sbjct: 606 SLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDDDLVGVKLTDGTKEI 665
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
M ++NG+ I +R + R G + L +GD++ +MD+ ED H
Sbjct: 666 MMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGDEVIAMDV------------AEDDH 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P+S +R G+ + ++ A +
Sbjct: 714 D---------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCM----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
++ +++V+Q+G RI VRD+S +R +GV L+ ++ ++ S S +
Sbjct: 760 --VTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV 810
>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
Length = 815
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/837 (41%), Positives = 548/837 (65%), Gaps = 30/837 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+ +H+E+ S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ELG+ KP KK
Sbjct: 7 KIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD AVYD++VR+AQ+FS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ++I ++T++F PNFD++ +EP +LPAR P LLLNG++GIAVGMATNIPPH
Sbjct: 127 MSKIATEML-SEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+VD L +I NPE E+++++ GPDFPTGGLI+G GI AYRTGRG I +R K
Sbjct: 186 NLREVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIKIRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T++E +++ R +++ E+PYQ NK+ +EKIA+LV K L+GI+D+RDESDR+GMRIV
Sbjct: 246 TQIERMENGKSR--IVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR + +++N +++ T LQ +F M+ +++ +P+ + L+E+L +L+ + V+ R
Sbjct: 304 IELKRETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + +ER HI+EG+ + L NLD VI+++R + + A L + F L++ QA AI
Sbjct: 364 RTRFDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLMENFGLTQIQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP-R 561
LDM L++LT LER+K DE L+++I L+E+L++ + + Q+I+ E+ E++ ++ R
Sbjct: 424 LDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRKKYGDDRR 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+++ D D ++ D+I ++M++ ++ GY+KR+ T+ +Q RG G + + +D
Sbjct: 484 TAIVIDEDDFAVE--DLIAEEDMVVTLTHNGYIKRLPVTTYRVQKRGGRGITGMSTKGDD 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ V HD++ F++RG +Y + ++IPE R G +V +L++ GE +T++IP
Sbjct: 542 FVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRGVAIVNLLAVEPGEYVTAVIP 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F QF+ M T GY+KK L F + R G+IA+ L DEL VR VA+
Sbjct: 602 VKDFNAGQFMFMCTRQGYVKKTPLEEFINARKGGLIALSLAENDELIDVRLTNGKYEVAL 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ +G+ I + + +RS+ R+ RG + L GDK+ S++++P + ++ E
Sbjct: 662 VTYHGLSIRFAEENVRSMGRSARGVRGISLGPGDKVMSLEVLPPEMEQETE--------- 712
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L V+E G GKR P S +R G+ + ++ V+G +
Sbjct: 713 --------MLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKNGP----VMGAKMVRP 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
G ++V++++ G V R DISIQ R+ +GV L+RL+ ++ S + + V E E
Sbjct: 761 G---DEVMMITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARVVVEENE 814
>gi|390933680|ref|YP_006391185.1| DNA gyrase subunit A [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569181|gb|AFK85586.1| DNA gyrase, A subunit [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 812
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/839 (43%), Positives = 541/839 (64%), Gaps = 35/839 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N R++PV++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ LGL+ KP
Sbjct: 7 NEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKP 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK VVGEVLGK+HPHGD AVYD++VRMAQDFS+R L+ GHGNFGSID DPAAAMRY
Sbjct: 67 YKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ ML DI+++TV+FVPNFDE+ KEP +LP+R P LL+NG+ GIAVGMATN
Sbjct: 127 TEARLSKIALEML-TDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAVGMATN 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + A I NP EL++Y+ GPDFPTGGLI+G GI + Y TGRG+I
Sbjct: 186 IPPHNLGEVIDGIIAYIDNPYIATDELMKYIKGPDFPTGGLIVGKDGIRETYETGRGKII 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E + +++ +++ E+PY KS LVEKIAELV +K ++GISD+RDESDR+G
Sbjct: 246 VRAKAEIEEHNGRNR---IVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR +P +V+N LY T +Q +F M+ ++DG PK + L ++++ ++D +
Sbjct: 303 MRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQFD 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + ER HI+EG+ + LD++D VI ++R + + A L D+F LS++Q
Sbjct: 363 VITRRTKFDLQKADERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKFGLSDRQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+DM L RLT LER+K DE L ++I L+ +LS K +L++I++E+ ++K ++S
Sbjct: 423 AQAIVDMRLGRLTGLERQKIEDELNDLYQKIKDLKNILSDEKKVLEIIKKELKDVKEKYS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+ R + + A ++D D++ ++ ++ ++ GY+KRM + + Q RG G S R
Sbjct: 483 SERKTQIV-AKEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKSQKRGGKGISGISTR 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + HD +L+F+++G VYS R IPE R A GT ++ ++ + E++ +
Sbjct: 542 EDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIINLIQIDQDEKVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IPV + +++VM T NG IKK + F I+ +G AI+L GDEL V +
Sbjct: 602 VIPVKKSHNAKYVVMCTKNGIIKKTEIEDFPKIKKSGNTAIKLDDGDELINVMLTDGNRE 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NG I D +R + R RG +A+ L+D D + MD++ D +R
Sbjct: 662 IIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVEMDLV------DRDRD---- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+E+G+GKR +R G+I K + + +L ++ V
Sbjct: 712 -----------ILVVTENGYGKRSDADEYRLQTRAGKGIIAAKITKKTGKLVSIMSV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
E DE ++++S +G + R K+ DIS R GV+LM+L+ ++ S + I+ E
Sbjct: 758 ----SEKDE-LMIISANGILIRTKIADISKMHRDTAGVMLMKLDEGDRVVSTARIANDE 811
>gi|258510026|ref|YP_003183460.1| DNA gyrase subunit A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 820
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/833 (43%), Positives = 546/833 (65%), Gaps = 36/833 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ +E+ S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AM+E G++ KP+KK +
Sbjct: 10 ILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGKFHPHGD AVY++LVR+AQDFS RYPLI GHGNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A++ LL DI+++TV+F+PN+DE ++EP +LP+R P LL+NG+SGIAVGMATNIPPHN
Sbjct: 130 SAIA-LELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D + LI +P+ATL +L+ + GPDFPTGG+I+G GI AY TGRG ITVR T
Sbjct: 189 LREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGSITVRAVT 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E L R +++ EIPYQ NK+ +VEKIAEL K +DGI+D+RDESDR GMR+VI
Sbjct: 249 HFEELSGGKTR--IVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+R P +V+N+L++ TALQ+SF + +++G+PK + L+E L+ +L+ + VV RR
Sbjct: 307 ELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRDVVRRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++ L++ + R HI+EG+ + LD+LD VI ++R + + A L F LSE+QA AIL
Sbjct: 367 TQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAIL 426
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K E + L ++I +L+ +L+ K + +I QE++E+K RF R +
Sbjct: 427 DMRLQRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEIKERFGDERRT 486
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ +A+ G++ + D+IP ++++AI+ +GY+KR+ +T++ Q RG G ++ D +
Sbjct: 487 RIVNAE-GEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQRRGGRGMTLINAHEEDFV 545
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD++L+F++RG +Y+ +AY +PE R A GTP+V +L++ GE++T++IPV
Sbjct: 546 TGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVK 605
Query: 684 EF----AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
GD +L T G +KK L +S++R G+IAI L D+L V+ +
Sbjct: 606 SLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDDDLVGVKLTDGTKEI 665
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
M ++NG+ I +R + R G + L +GD++ +MD+ ED H
Sbjct: 666 MMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGDEVIAMDV------------AEDDH 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P+S +R G+ + ++ A +
Sbjct: 714 D---------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCM----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
D+ V++V+Q+G RI VRD+S +R +GV L+ ++ ++ S S +
Sbjct: 760 --VTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV 810
>gi|332798031|ref|YP_004459530.1| DNA gyrase subunit A [Tepidanaerobacter acetatoxydans Re1]
gi|438000918|ref|YP_007270661.1| DNA gyrase subunit A [Tepidanaerobacter acetatoxydans Re1]
gi|332695766|gb|AEE90223.1| DNA gyrase, A subunit [Tepidanaerobacter acetatoxydans Re1]
gi|432177712|emb|CCP24685.1| DNA gyrase subunit A [Tepidanaerobacter acetatoxydans Re1]
Length = 807
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/832 (43%), Positives = 543/832 (65%), Gaps = 34/832 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EEM SYI YSMSV++GRALPDVRDGLKP+HRRIL+AM +L L+ KP +K
Sbjct: 7 KIIPVKIEEEMKKSYIDYSMSVIVGRALPDVRDGLKPIHRRILYAMSQLSLTPDKPHRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEV+G +HPHGD A+YD++VR+AQDFS RY L+ GHGNFGSID DPAAAMRYTE R
Sbjct: 67 ATIVGEVMGNYHPHGDAAIYDAMVRLAQDFSTRYLLVDGHGNFGSIDGDPAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S ML +D+++DTV+F+PN+DES EPS+LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MTRISLEML-SDLNKDTVDFIPNYDESLDEPSVLPARFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I NP+ T++EL++ + GPDFPTGG+I G GI D Y TGRG + +R K
Sbjct: 186 NLSEVIDGVIMMIDNPDVTVEELMQVIKGPDFPTGGIIKGYSGIKDMYTTGRGSVVMRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E +D+ R +I+ EIPY NK+ +VEKIAELV +K ++GISD+RDESDR G+RIV
Sbjct: 246 ATIEAMDATRHR--IIVTEIPYMVNKARMVEKIAELVRDKKIEGISDLRDESDRKGIRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
++LKR A+P I++N LY+ T +QS+F M+ ++D +P+ + L+E++ +L+ + V+ R
Sbjct: 304 MDLKRDANPHIILNQLYKHTQMQSTFGAIMLALVDNKPRVLNLREMIYYYLEHQKDVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L++ +ER HI+EG+ + LD++D VI I+R + + TA AL F LSEKQA I
Sbjct: 364 RTKFDLAKAQERIHILEGLKIALDHIDEVIAIIRGSKDDVTARDALIKNFGLSEKQAQVI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I +++LS K +L +I++E+I++K ++ R
Sbjct: 424 LDMRLKRLTALEREKIDEEYAELLKKIDYYQKILSDEKIVLSIIKEELIQIKQKYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D G D D+I +++++ + GYVKR + + Q RG G + R D
Sbjct: 484 THIT-HDEGDFDIEDLIVEEDIVITQTHFGYVKRQPISAYRSQRRGGRGVTGITTREEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H V++F+++G VY +AY+IP+ +R A GT +V +L L ER+ ++I +
Sbjct: 543 VEHIFVGTTHHVVMFFTNKGNVYKLKAYEIPDTSRTARGTAIVNLLPLKPDERVNTMITI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F ++L+ T NG +KK L+ ++S R TG+IAI L DEL VR ++ + +
Sbjct: 603 KDFDEARYLIFATKNGIVKKTLLSEYASSRRTGLIAITLKDDDELIGVRLVDRNEEIILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ NGM I S + + S R ++G + L+ DK+ SMDI+
Sbjct: 663 THNGMSIRFSVNDVSSTGRTSQGVKGINLRSDDKVVSMDIV------------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAED 861
G +L V+E G GKR+ FR G+I K + + LA + VV
Sbjct: 704 --REGHDVLVVTEKGFGKRIDEKEFRCQARGGRGVIIQKITDKTGPLAGLRVV------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
GE+DE ++L + SG + R+ +IS +R GV L++LE + S ++++
Sbjct: 755 GENDE-IMLCTSSGIMIRLLTSEISKMSRNTMGVTLIKLEQDDFLASMAVVT 805
>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
Length = 824
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/831 (43%), Positives = 549/831 (66%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 18 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 78 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 138 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 196
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+AT+ EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 197 NMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 256
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 257 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M LK VL+ ++D + V+ R
Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITR 374
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 375 RTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 434
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 435 LDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYGDKRR 494
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 495 TEIT-FDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKETDI 553
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + ++Y+IPE R A GT ++ +L++ + ERIT++I V
Sbjct: 554 VSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVENDERITAVIQV 613
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D++L + T +G +KK L+ F SIR G+ A+ L DEL V+ ++ + +
Sbjct: 614 KEFRADRYLFLGTKHGVVKKTPLSEFGSIRRNGLKAVNLDEDDELIGVKFTDGENRIMLG 673
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I + +RS+ R RG + L DGD++ +MD++
Sbjct: 674 TRGGKAITFPEEGVRSMGRVARGVRGITLADGDEVVAMDVL------------------- 714
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR S +R GLI K + + VVG + +
Sbjct: 715 --RSDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEK----TGPVVGIRVVRE- 767
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM + S ++ S + ++
Sbjct: 768 --NQELMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMN 816
>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 832
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/831 (43%), Positives = 548/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 26 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 85
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 86 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 145
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ML DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 146 MSKIAELML-RDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 204
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+ T+ EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 205 NMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 264
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DG++D+RDESDRSGMRIV
Sbjct: 265 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 322
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M LK VL+ ++D + +V+ R
Sbjct: 323 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITR 382
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D FKL+EKQA AI
Sbjct: 383 RTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAI 442
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I +L+ +L+ R +L +I+ E+IE+++++ R
Sbjct: 443 LDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYGDKRR 502
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 503 TEIT-FDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKETDI 561
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + ++Y+IPE R A GT +V +L++ + ERIT++I V
Sbjct: 562 VSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAVENDERITAVIQV 621
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D++L + T +G +KK L+ F +IR G+ A+ L DEL V+ ++ + +
Sbjct: 622 KEFRADRYLFLGTKHGVVKKTPLSEFGNIRKNGLRAVNLDEDDELIGVKFTDGENRIMLG 681
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I D +RS+ R RG + L DGD++ +MD++
Sbjct: 682 TRGGKAITFPEDGVRSMGRVARGVRGITLADGDEVVAMDVL------------------- 722
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR S +R GLI K + + VVG + +
Sbjct: 723 --RSDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEK----TGPVVGIRVVRE- 775
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM + S ++ S + ++
Sbjct: 776 --NQELMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMN 824
>gi|373470587|ref|ZP_09561708.1| DNA gyrase, A subunit [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371762233|gb|EHO50781.1| DNA gyrase, A subunit [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 824
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/848 (42%), Positives = 543/848 (64%), Gaps = 41/848 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV + ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQD+S+RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ ML ADI++DTV+F PNFDE++KEP++LPAR P LL+NG +GIAVGMAT
Sbjct: 123 YTEARLSKIAMEML-ADINKDTVDFAPNFDETEKEPTVLPARFPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
NIPPHN+ E++D + LI N + T+ E+L + GPDFPTG I+G GI +AY TG
Sbjct: 182 NIPPHNIKEVIDAVVRLIDNKIEDKDTTIDEILGIIKGPDFPTGANILGLRGIREAYTTG 241
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR TE+E + + R +++ E+PY NK+ L+EKIAELV++K +DGI+D+RDE
Sbjct: 242 RGKIKVRAVTEIESMSNGKNR--IVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDE 299
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S+R GMR+VIEL++ + +I++N LY+ T LQ +F NM+ ++D QPK + + ++LQ +L
Sbjct: 300 SNREGMRVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYL 359
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR +++L++ KER HI+EG+++ LDN+D +I+I+R + + + A L F
Sbjct: 360 SHQEDVVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSENVNIAKEELIKRFG 419
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
LS+ QA AI+DM LR LT LER++ E L+ +I E +L+ K +L LI++E++ +
Sbjct: 420 LSDAQAQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLALIKEEILVV 479
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
++++ R + D + D+I +++++A+++ GY+KRM P+ FN+QNRG GK
Sbjct: 480 EDKYKDDRRTGFMQDDDMED--EDLIQREDIIIAMTKLGYIKRMSPDNFNVQNRG--GKG 535
Query: 614 VGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
+ ++ +D + D ++ H+ + +F+++G VY+ + YKIPE +R A G +V +L L
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGVAIVNLLQLQ 595
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+I++IIP A D +L M+T NG IKK +NLF +IR G+ AI L DEL V+
Sbjct: 596 PDEKISAIIPSEARARDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVK 655
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
DD + + S+ GM I + IR++ R G MRL GD++ M +
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNKGDEVIGMQL--------- 706
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
S G +LL VSE G+GKR +S F+ G+I YK D
Sbjct: 707 ------------ASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK----DNEKTG 750
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+VG L + D +++L++ G V RI+V ISI R A GV LM ++ + AS+
Sbjct: 751 KLVGAKLVNE---DREILLITTEGIVIRIEVSGISILGRAASGVKLMNIDRESDTKIASI 807
Query: 912 ISVTEPET 919
+ E +
Sbjct: 808 AKIREEKN 815
>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
Length = 822
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/838 (43%), Positives = 538/838 (64%), Gaps = 39/838 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
PV + EM +Y++Y+MSV++ RALPD RDGLKPV RRIL+ M ++G S +P+KK AR+
Sbjct: 8 PVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+VLGK HPHGD+AVYD+L RMAQ +S+RYPLI G GNFGSID DP AAMRYTE RL
Sbjct: 68 VGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARLAP 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E LL++I++DTV+F NFD S +EP +LPA LP LLLNGASGIAVGMATNIPPHNLG
Sbjct: 128 IAEE-LLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNLG 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL D + LI +PEAT++EL++ +PGPDFPT GLI+G GIL AY TGRG+IT+R KT +
Sbjct: 187 ELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ +++ E+PYQ NK+ L E+IAELV+++ ++GI D+RDESDR+GMR+VI L
Sbjct: 247 E--EAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERR 443
K+ A P V+N+LY+ T +Q++F NM+ +++ QP+ + LK +LQ ++ R V+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L++ +ER HI+EG+ + LDNLD VI+ +R++ + +A L F L+E+QA AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
D+ LRRL LERKK DE + +++ I +LE++L++ + +L LI+Q++ LK ++ PR +
Sbjct: 425 DLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDPRRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ +G++ D D+IP+ +++ ++++GY+KR P+ + Q RG G R D +
Sbjct: 485 RIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIV 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ C + D++L+F+DRG VY +A+++P+ +R A G PLV ++SL GE++TS++ V
Sbjct: 545 RHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAVR 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF ++LVM T+ G IK+ L +S +R+ G+IAI L GD L WVR + + + +
Sbjct: 605 EFDA-EYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G + +R + R G + + L DGD++ SMD+
Sbjct: 664 ARGQTLRFEQSEVRPMGRPATGVIGINLADGDRVVSMDL--------------------- 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDG 862
G LL V+ G GKR LS + G+I K + D +AA VV
Sbjct: 703 AEEGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKLRNDLDEVAAAAVV-------- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+ ++ G V R +IS R +GV ++ + ++ + +SV +PE +
Sbjct: 755 REHSLLTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAA---LSVEDPEEN 809
>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
Length = 824
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/848 (41%), Positives = 546/848 (64%), Gaps = 41/848 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV + ++L + M SYI Y+MSV+ RALPD+RDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y SLV MAQ++S+RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ ML ADI++DTV+F PNFDE++KEP+++PAR P LL+NG +GIAVGMAT
Sbjct: 123 YTEARLSKIAMEML-ADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
NIPPHNL E+++ + +I+N E ++ E+L+ + GPDFPTG I+G GI DAY TG
Sbjct: 182 NIPPHNLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTG 241
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR +E+E + + R +++ E+PY NK+ L+EKIAELV++K +DGI+D+RDE
Sbjct: 242 RGKIKVRAVSEIESMQNGKNR--IVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDE 299
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S+R GMR+VIEL+R + ++++N LY+ T LQ +F NM+ +++ QPK + + ++L+ +L
Sbjct: 300 SNREGMRVVIELRRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYL 359
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR ++ L++ KER HI+EG+++ LDN+D +I+I+R + + + A L F
Sbjct: 360 AHQEDVVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFG 419
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
LS+ QA AI+DM LR LT LER++ E L+ +I E +L+ K +L +I++E++ +
Sbjct: 420 LSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKIEYFESILADNKKLLGVIKEEILIV 479
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
+ ++ R + D +++D D+I +++++A+++ GY+KRM P+ FN+QNRG GK
Sbjct: 480 EGKYKDDRRTGFIQDD--EMEDEDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRG--GKG 535
Query: 614 VGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
+ ++ +D + D ++ H + +F+++G VY+ + YKIPE +R A G +V +L L
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQ 595
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+I++IIP +G+ +L M+T G IKK +NLF +IR G+ AI L DEL V+
Sbjct: 596 PDEKISAIIPSEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLAAINLTEDDELIEVK 655
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
DD + + S+ GM I + IR++ R G MRL + D++ M +
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNEADEVIGMQL--------- 706
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
S G +LL VSE G+GKR +S F+ G+I YK D
Sbjct: 707 ------------ASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK----DNDKTG 750
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+VG L + D +++L++ G + RI+V IS+ R A GV LM ++ + AS+
Sbjct: 751 KLVGAKLVNE---DREILLITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASI 807
Query: 912 ISVTEPET 919
V E +
Sbjct: 808 AKVREEKN 815
>gi|334126994|ref|ZP_08500930.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Centipeda
periodontii DSM 2778]
gi|333390296|gb|EGK61436.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Centipeda
periodontii DSM 2778]
Length = 824
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/831 (42%), Positives = 545/831 (65%), Gaps = 32/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 18 RIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKS 77
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 78 ARIVGEVLGKYHPHGDTSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 137
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 138 MSKIAE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 196
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI +PE T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 197 NMVEVINGTLMLIDSPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYLTGRGVIKMRAR 256
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DG++D+RDESDRSGMRIV
Sbjct: 257 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 314
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + PS+++N LY+ T LQ SF M+ ++DGQP M LK++L ++ + +V+ R
Sbjct: 315 IELRRDSTPSVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQMLGHYISHQETVITR 374
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL D F+L+EKQA AI
Sbjct: 375 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFRLTEKQAQAI 434
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I +L+ +L+ R +L +I+ E+ E+++++ R
Sbjct: 435 LDLRLQRLTGLEREKIEEEYQEVLKMIEELKGILADRTKVLAIIKNELSEVRDKYGDARR 494
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 495 TEIT-YDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGTKETDI 553
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I +
Sbjct: 554 VSDLLITTTHHDILFFTNRGRTFFLKAYEIPESGRQAKGTAIVNLLAVESDERITAVIQI 613
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ + + +
Sbjct: 614 KEFRPDRFLFLGTKRGVVKKTPLIEFANIRKSGLKAVNLDEDDELIGVKFTDGANRIMLG 673
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I + +RS+ R RG + L DGD++ +MDI+
Sbjct: 674 TRGGKAITFPEEDVRSMGRGARGVRGISLSDGDEVVAMDIL------------------- 714
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+E G+GKR +R GLI K + D+ VVG + +
Sbjct: 715 --KQGSEVLTVTEGGYGKRTTAEEYRTQTRGGKGLINMKVT--DKTGP--VVGIRVVRE- 767
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++++L++ G V R V +IS+ +R +GV LM + + ++ S + ++
Sbjct: 768 --NQELMLITTDGLVIRTTVDEISLISRNTQGVKLMTIGENDRVASMATMN 816
>gi|387816244|ref|YP_005676588.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
Length = 831
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ +D + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G A+ L+ DK SMD++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKAITLRKADKAVSMDVV-----------IEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------TLLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
Length = 837
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/823 (42%), Positives = 542/823 (65%), Gaps = 36/823 (4%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
PR+ + + EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM++LG+ S K +KK
Sbjct: 7 PRVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVY+++VRMAQ FS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 67 SARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEA 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S LL DI++DT+++ N+D +++EP + PAR P LL+NG SGIAVGMATNIPP
Sbjct: 127 RMSKIS-MELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
H+LGE +D + A+ NP+ T+ E++E ++PGPDFPT G I+G GI AY TG+G IT+R
Sbjct: 186 HHLGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSITIR 245
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K +E K+ + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMR
Sbjct: 246 AKLNIE--QGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMR 303
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A+ ++V+N+LY+ T+LQ++F NM+ ++DGQP+ + +K+ L +L+ + ++
Sbjct: 304 IVIELRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVII 363
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR +F+L++ + R HI+EG+ + LD+LD VI ++R + + A L + FKLSEKQA
Sbjct: 364 KRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMERFKLSEKQAQ 423
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE K L I +L+ +L+ + +L++I +E+ E+K ++
Sbjct: 424 AILDMRLQRLTGLEREKIEDEYKELQALIEELKAILADEEKVLEIIREELTEIKEKYKED 483
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + +G +D D+IP + +++ ++ +GY+KR+ +T+ Q RG G+ + + N
Sbjct: 484 RRTEIVAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPASTYRTQKRG--GRGIQGMGTN 541
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD +L+F+++G VY A+ Y+IPE +R A G P++ +L + GE + +
Sbjct: 542 EDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTAKGIPIINLLQVEKGEWVNA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V++F + +L T +G K+ SL F +IR G+IA+ L DEL VR
Sbjct: 602 VISVNQFDEEAYLFFTTKHGIAKRTSLEKFRNIRKGGLIAVGLREEDELISVRLTDGQKE 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ +A++NG +I IRS+ R G + L+ D + SM+II
Sbjct: 662 MMIATKNGYLIRFEETQIRSMGRTAAGVKGISLRGDDVVVSMEII--------------- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
G +L V+ G GK+ S +R+ +NR G + +++ V V
Sbjct: 707 ------EPGSKILHVTNKGFGKQTDESEYRR--INRGGKGVFTCKLDEKTGNVVAVK--- 755
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
A +G DE ++L++ +G + RI+V+DIS R +GV L+RL+
Sbjct: 756 AVNG--DEDLMLITIAGVLIRIQVQDISQTGRNTKGVHLIRLQ 796
>gi|339626335|ref|YP_004717978.1| DNA gyrase subunit A [Sulfobacillus acidophilus TPY]
gi|379005806|ref|YP_005255257.1| DNA gyrase subunit A [Sulfobacillus acidophilus DSM 10332]
gi|339284124|gb|AEJ38235.1| DNA gyrase, A subunit [Sulfobacillus acidophilus TPY]
gi|361052068|gb|AEW03585.1| DNA gyrase subunit A [Sulfobacillus acidophilus DSM 10332]
Length = 811
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/837 (43%), Positives = 536/837 (64%), Gaps = 35/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV++ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM ELG + P+KK A
Sbjct: 7 VLPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMQELGNTPNHPYKKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLG++HPHGD AVYD++VRMAQDFS+RYPL+ GHGNFGS+D D AAMRYTE RL
Sbjct: 67 RIVGEVLGRYHPHGDTAVYDAMVRMAQDFSIRYPLVDGHGNFGSMDGDSPAAMRYTEVRL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML ADID++TV+FVPNFDES +EP +LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 127 SPIAMEML-ADIDKETVDFVPNFDESTEEPVVLPAKIPNLLINGSSGIAVGMATNIPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ LI +PEA ++LL+ +PGPDFPTGG+IMG GI AY TGRG IT+RG
Sbjct: 186 LNEVCQAAEMLIDHPEAGFEDLLKVLPGPDFPTGGMIMGRDGIRQAYLTGRGIITIRGIA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+VE ++ R ++I E+PYQ NK+ L+EKIAELV + ++GISD+RDESDR G+R+VI
Sbjct: 246 KVE--ETAQGRARIVITEVPYQVNKAKLIEKIAELVHDHRIEGISDLRDESDRDGVRVVI 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +++N LY+ T +Q +F ++ ++DG+P + ++E+LQ F+ R V+ RR
Sbjct: 304 ELKRDAVPKVILNQLYKFTPMQQTFGIILLALVDGRPMILSVREMLQNFIRHRKEVITRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
R++L++ + R HI+EG+ + L LD VI+++R A S A L F LSE+QA AIL
Sbjct: 364 TRYELNKAEARAHILEGLRIALQFLDEVIQLIRTAASVEDARQGLMTRFGLSERQATAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M L+RLT LER+K E + +M I +L +L+ + + +I++++ E++ ++ R +
Sbjct: 424 EMRLQRLTALEREKIEAEYQDVMALIERLRAILADEQLVYAMIKEDLAEIRQKYGDDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
L A + D D+IP ++M++ I+ +GY+KR+ + + Q RG G + +R +D +
Sbjct: 484 KLGPA-VKDIADEDLIPEEDMVVTITHRGYIKRLATSVYRPQRRGGRGIAGSTVREDDFI 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V H ++ +F++RG +Y + ++IPE +R A G + +++L ERI ++ ++
Sbjct: 543 NHLFVASTHSYLCFFTNRGRIYRVKVHEIPEASRQAKGISVANLIALEQDERIAAVQTLT 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ D + V T G +K+ L+ + + R GIIAI L GDEL V + +A+
Sbjct: 603 DTLDDHYWVFATKRGVVKRTPLSDYETWRGGGIIAITLDDGDELIGVEPTAGKSHIILAT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
++G VI D +R R RG +RL+ D + S+ +
Sbjct: 663 RHGQVIRFEEDEVRPTGRAARGVTGIRLRPEDMVVSLATV-------------------- 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S P LL ++E+G GKR L FR G++G + + DR +VVG E
Sbjct: 703 -SEQPELLILTENGFGKRTRLDQFRVTGRGGQGIVGMRVT--DRTG--YVVGIQPV---E 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
E+ +++S GT+ R++V IS Q R +GV +MRLE Q S ++ + ETD
Sbjct: 755 GSEECMVISSEGTMIRLEVGSISEQGRATQGVKVMRLEDG---QHVSAFALVKAETD 808
>gi|392391699|ref|YP_006428301.1| DNA gyrase subunit A [Desulfitobacterium dehalogenans ATCC 51507]
gi|390522777|gb|AFL98507.1| DNA gyrase subunit A [Desulfitobacterium dehalogenans ATCC 51507]
Length = 825
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/819 (43%), Positives = 531/819 (64%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EE+ S+I YSMSV++ RALPDVRDGLKPVHRRI++ +HELG++ KP+ K
Sbjct: 9 KILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDFS RYPLI GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++ ML ADID+DTV+F PN+DE ++EP ++PA+ P LL+NG++GIAVGMATNIPPH
Sbjct: 129 MAKITQYML-ADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ A I NPE ++EL+ Y+ GPDFPTG IMG GI+ AYRTG+G +R K
Sbjct: 188 NLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGSFRIRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ KS +M +I+ EIPY NK+ LVEKIAELV K ++GI+D+RDESDR+GMRIV
Sbjct: 248 AHIEEME-KSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P +++N LY+ T ++ SF N++ ++DGQPK + LK+++ F++ + V+ R
Sbjct: 307 MELRRDVNPQVLLNQLYKHTQMEDSFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVITR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HI+EG+ + LD +D VI I+R + A L F LS+KQ+ AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDYIDEVINIIRTSEDEQNAKENLMARFGLSDKQSQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ K + E I L+ +L S + +L +++QE+ E+K +F R
Sbjct: 427 VDMRLKRLTGLEREKIEEQYKKIQETIAYLKAVLDSEQMVLDIVKQELQEVKEKFGDERR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ +D D+I ++E+++ +S +GY+KRM NT+ Q RG G R D
Sbjct: 487 TEI-SFDATHMDIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSIIP 681
+ H ++L+F+ RG VY +A++IPE R GT LV +LS++ E+IT+++
Sbjct: 546 VEQIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLS 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ E+ D L M T NG +KK L + S R G+IAI L DEL VR D+ + M
Sbjct: 606 IREYNEDFHLFMATKNGIVKKTLLKEYDSPRKDGLIAISLSGDDELIGVRLTKADEHIIM 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++NG+ I +R + R G + L+ D + SMD+I E E
Sbjct: 666 ATKNGLCIRFIESDVRQMGRTAHGVKGISLEKEDFVVSMDVI-------YEEEAE----- 713
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
+L ++E G KR S +R G+I K +A+ +L + V+
Sbjct: 714 --------ILSMTEHGFSKRTSPSEYRVQGRGGKGIIATKLNAKTGKLVGLKVM------ 759
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
++ ++++++ G + R +V IS Q R A+GV+ MR
Sbjct: 760 --RPEDDIMIITEDGIIIRQEVSGISKQGRSAQGVMAMR 796
>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
Length = 929
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/816 (44%), Positives = 515/816 (63%), Gaps = 33/816 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P ++ +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM+E G++ KP KK A
Sbjct: 83 PTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSAWA 142
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEV+GK+HPHGD+A+YDS+VRM+QDFS+R PLI GHGNFGSID DP AAMRYTE RL
Sbjct: 143 VGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL-T 201
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
S +LAD++++TV+ PN+DE+ EP++LPAR P LL+NG+SGIAVGMATNIPPHNLG
Sbjct: 202 RSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNLG 261
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ + +C +I NP+ T +EL+E +PGPDFPTGG+IMG GI DAY TGRG ITVR K V
Sbjct: 262 EVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVHV 321
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E +K+ R +++ EIPYQ NK +L EKIA+ V K ++GISD+RDES+R GMRIVI+L
Sbjct: 322 E--STKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 379
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KRG P +V+N+LY+ T LQS+F + ++DG P+ + L+E+L+ ++D + VV RR
Sbjct: 380 KRGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTE 439
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F L + +R HI+EG++ +DN+D ++ I+R + ++ A + + F L + Q +AIL M
Sbjct: 440 FDLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHERFDLDDIQGEAILQM 499
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT L R+ VDE L E I E+LL+ IL +I E+ ++ NRFS R + +
Sbjct: 500 RLRRLTGLARQDLVDEISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSNKRRTQI 559
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
D D LD D+I ++M++ ++ GYVKR+ + Q RG G L+ ND + +
Sbjct: 560 SDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVEE 619
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
V HD+VL+F++ G VY + +++P R G +V +LSLS+GE+I ++I +F
Sbjct: 620 LFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTKGNAIVNVLSLSEGEKIAAVITTRDF 679
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
+ +L+ T G +KK +++ + R GIIAI L GDEL VR D V + S +
Sbjct: 680 PAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDELVNVRRVHPGDKVILCSSD 739
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G IL R++ R T G + LK M M+I +N G
Sbjct: 740 GKAILFDESQARAMGRGTSGVRGIMLKGEATMLGMEI-----------------TNGNGD 782
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGES 864
L ++E G+GKR +S + + G+ +A+ +L A VVG
Sbjct: 783 ----LFVITEKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKGKLVACRVVG--------P 830
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++++S+ G V R+K DIS R +GV +M +
Sbjct: 831 QHEIMIMSEEGVVIRVKAVDISKLGRSTQGVKVMNI 866
>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
Length = 809
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/823 (44%), Positives = 535/823 (65%), Gaps = 39/823 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + EEM GSY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM++LG+ P+KK AR+
Sbjct: 8 PINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ FS RYPL+ G GNFGS+D DP AAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEARLAQ 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E LL DID++TV+F+PNFD S +EP++LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 IAE-QLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLA 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL +C LI NP+ + +L++++ GPDFPTGG I+G GI AY TG+G+I ++ K +
Sbjct: 187 ELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+D+ R + + EIPYQ NK+ LV KIAELV+++ + GISD+RDESDR GMR+VIEL
Sbjct: 247 GEVDN---RKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIEL 303
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR A+P V+NSLY+ T +++SF NM+ ++DGQP+ + LKEVL+ F+DFR ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L K+R HI+EG+ LD +DR+I I+R + + TA L EF S QA AILD+
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQAQAILDL 423
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K +DE LM++I LE+LLS + I L++++ +LK + PR + +
Sbjct: 424 QLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSYGQPRATEI 483
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ D++P+ ++++ +SE+G++KR+ N F LQ+RG G R DA+
Sbjct: 484 SSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRF 543
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
V HD +L+F++RG V+S R + IP + +R A GT +V ++ ++ ERIT+I+ +
Sbjct: 544 LSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKS 603
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D FL+M T G IKK SL F+++R++G+IA+ L DEL T + + +A++
Sbjct: 604 FPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKDILLATR 663
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +R+ R + G A+ L GD++ SMD+
Sbjct: 664 MGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDV---------------------A 702
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
G ++ V+E+G GK + + + G+I +K D+ V V ++E
Sbjct: 703 QEGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVV--DKTGEV-VASKVVSE---- 755
Query: 865 DEQVVLVSQSGTVNRIKVRD------ISIQARYARGVILMRLE 901
+Q++L+S G V R +V++ I I R +GV +MRLE
Sbjct: 756 TDQMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLE 798
>gi|406920094|gb|EKD58219.1| hypothetical protein ACD_56C00171G0003 [uncultured bacterium]
Length = 820
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/836 (43%), Positives = 531/836 (63%), Gaps = 32/836 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
NV PR + E+ + SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M + GL
Sbjct: 15 NVEPRQIVAEVQQ----SYLDYAMSVIVARALPDVRDGLKPVHRRILYSMWDTGLRPTAK 70
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+K A VVGEVLGK+HPHGD AVYDS+VR+AQDFSLRYPL+ G GNFGS+D D AAA RY
Sbjct: 71 FRKSATVVGEVLGKYHPHGDTAVYDSMVRLAQDFSLRYPLVWGQGNFGSMDGDSAAAYRY 130
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE +L+A++E ML DI++DTV+F+PNFD KEP +LPA+LP LLLNG GIAVGMATN
Sbjct: 131 TEAKLKAIAEEMLF-DIEKDTVDFIPNFDGVHKEPMVLPAKLPQLLLNGTMGIAVGMATN 189
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL EL D + LI NPEA + +L++++ GPDFPTGG++ GI +AY TGRG+I
Sbjct: 190 IPPHNLNELADAINHLIDNPEANVDDLMKFIKGPDFPTGGIMYNTPGIKEAYSTGRGKIV 249
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
R K E+ +++KS ++I EI Y TNKS L+ KIA+LV+ + GI D+RDESD+ G
Sbjct: 250 TRAKAEI--IETKSGSFNIVITEITYLTNKSNLIIKIADLVKEGKVLGIKDLRDESDKDG 307
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRC 437
+RIVIELK+ A V+N LY +T LQ +F+ NM+ ++DG P+ + LK +L+ ++ R
Sbjct: 308 VRIVIELKKDAYAQKVLNKLYNMTDLQKNFNVNMLALVDGIDPQILSLKSILEHYIIHRN 367
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
VV RR +F+L++ K+R HI+EG+ + LDN+D VI ++++P+ A A L +FKLSE+
Sbjct: 368 IVVTRRTQFELNKAKDRAHILEGLKIALDNIDAVIETIKKSPTKEEAHANLMRKFKLSER 427
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AIL+M L+ L LERKK DE ++ I LE+LLSS K IL +++ E+I LK +F
Sbjct: 428 QASAILEMRLQTLAGLERKKIEDELAEKLKLIAFLEDLLSSPKKILAVVKDELIALKEKF 487
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
R + + + D+IPN+E ++ IS+ GY+KRM P+ + +Q RG G
Sbjct: 488 GDERKTKVLKTGIEEFKQEDLIPNEEAIITISQDGYIKRMNPDVYKVQKRGGKGVIGATT 547
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
R D + AHD++++F++ G V+ +AY+IPE +R + G +V L L+ E+IT
Sbjct: 548 REGDVIEKVTSVMAHDNLMFFTNSGKVFQTKAYEIPESSRTSKGQAVVNFLQLAQEEKIT 607
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++IP ++ G +F M T G +KK + F ++R +G+IAI L GD L WV+ T D
Sbjct: 608 AMIPYNKSDGYKFFFMTTTLGVVKKSKIEDFDNVRRSGLIAITLDKGDTLNWVQPTTGTD 667
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +++ G I +R++ R G ++LK DK+ MD++
Sbjct: 668 EIVISTSEGQAIRFKESDVRAMGRGAAGVRGIKLKISDKVIGMDVV-------------- 713
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGF 856
KG G LL ++E+G+GKR L S++ G+ K +A+ +L +V
Sbjct: 714 ----AKGQKGNQLLIITENGYGKRTDLKSYKIQKRGGSGIKTAKVTAKIGKLVGANIVN- 768
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+D E D + + S G + RI + IS+ R +GV +M+ K+ ++++I
Sbjct: 769 --VDDIEGD--LFITSLQGQIIRIPLASISVLGRATQGVRIMKPNAGDKVAASAII 820
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/274 (18%), Positives = 111/274 (40%), Gaps = 41/274 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ ++ ++ +GYIK+++ +++ + G+I GD ++ V D + + +
Sbjct: 512 EEAIITISQDGYIKRMNPDVYKVQKRGGKGVIGATTREGDVIEKVTSVMAHDNLMFFTNS 571
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRL-----------------KDGDKMASMDIIPAALH 788
G V + I SR ++G + DG K M +
Sbjct: 572 GKVFQTKAYEIPESSRTSKGQAVVNFLQLAQEEKITAMIPYNKSDGYKFFFMTTTLGVVK 631
Query: 789 K-------DLERTPEDSHSNVKGSSGPW---------LLFVSESGHGKRVPLSSFRKLPL 832
K ++ R+ + + KG + W ++ + G R S R +
Sbjct: 632 KSKIEDFDNVRRSGLIAITLDKGDTLNWVQPTTGTDEIVISTSEGQAIRFKESDVRAMGR 691
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
G+ G K D+ V+G + G+ Q+++++++G R ++ IQ R
Sbjct: 692 GAAGVRGIKLKISDK-----VIGMDVVAKGQKGNQLLIITENGYGKRTDLKSYKIQKRGG 746
Query: 893 RGVILMRLELS-GKIQSASLISVTEPETDLFLPS 925
G+ ++ GK+ A++++V + E DLF+ S
Sbjct: 747 SGIKTAKVTAKIGKLVGANIVNVDDIEGDLFITS 780
>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
Length = 811
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/837 (44%), Positives = 531/837 (63%), Gaps = 34/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP+ + EEM YI Y+MSV++GRA+PD RDGLKPVHRR L+AM E+G +S KP+KK A
Sbjct: 8 VVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPYKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+A+YD+LV+MAQ FS R L+ G GNFGSID D AAAMRYTE RL
Sbjct: 68 RIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYTEARL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+SE LL DID+ TV+FVPNFDES +EPS+LPAR+P LL+NG+SGIAVGMATN+PPHN
Sbjct: 128 TKISEE-LLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + C +I + + +EL++ MPGPDFPTGG++MG GI DAY TGRG+ VRG
Sbjct: 187 LREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCVVRGVA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + +II EIP+Q NK+ L+E IA LV +K ++GI DIRDESDR GMRIV+
Sbjct: 247 EIE---EEGRTPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIVV 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRGA P +++N LY+ TAL+SSF + I+D QP+ + LKE++ FL R VV RR
Sbjct: 304 ELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVVRRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L++ +ER HI+ G++V LDN+D VI +R + + A AL +F L E QADAIL
Sbjct: 364 TEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAKFALDEVQADAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
M LRRL LE +K +DE + +I +L +L+S +IL I++E++++ RF R +
Sbjct: 424 KMQLRRLAALEHQKILDERDAIAAEIERLSAILASEASILAEIKKELVDIGARFGDERRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ A + D D+I + +L++++ YVKR+ +T+ Q RG G + ND +
Sbjct: 484 RIAQA-AEAFDREDLIEDKPVLVSLTSSNYVKRIDLDTYRNQRRGGHGVIGMATKDNDGV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V HD++L F+DRG +Y + Y +PE R G LV +L+L ER+T++IPV
Sbjct: 543 EKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQRTGKGKALVNLLNLDGEERVTTVIPVR 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E+ D L T NG + K++L+ FS R TGI AI L GD L V+ + + + +
Sbjct: 603 EYRPDHHLFFATRNGTVAKMALDEFSRPRQTGINAINLRDGDALVDVKATDGNQELILTT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G + + +R + RN G ++L+ GD + ++ I+ ED H
Sbjct: 663 KFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDALQAIAIV------------EDDH---- 706
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
LL ++E G+GKR +R + G +G + D A V ++++
Sbjct: 707 ------LLTITEQGYGKRTEFDEYRG---HGRGTLGVRNIVVDARAGNVVGSMAVSD--- 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D++++++S SG V R KV +ISIQ R RGV +M+L+ ++ +++ EPE +
Sbjct: 755 -DDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEPEEE 810
>gi|390454455|ref|ZP_10239983.1| DNA gyrase subunit A [Paenibacillus peoriae KCTC 3763]
Length = 854
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/821 (43%), Positives = 536/821 (65%), Gaps = 35/821 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P+I+ ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+K
Sbjct: 6 NPQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVYD++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL ++ ML D++++TV+F+PN+D + EP +LPAR P LL+NG GIAVGMATNIP
Sbjct: 126 ARLSKIAMEML-RDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D + ALI NP+ T EL++Y+ GPDFPT G I+G GI AY+TGRG +T+R
Sbjct: 185 PHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT +E + +K++ +I+ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKTTIEEIGNKAR---IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R +P++V+N+L++ TA+QS+F NM+ I++ +PK + LK+VL +L + V+
Sbjct: 302 VVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQVEVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + + R HI+EG+ + LD+LD VI ++R + + A L + F L+ +QA
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E L+++I + E+L++ +L +I +E+ ELK RF+
Sbjct: 422 AILDMRLQRLTGLEREKIENEYNELLQKIAEYREILANEHLVLNIISEELNELKERFADE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + LD+ D+IP +++++ ++ GY+KR+ T+ Q RG G +
Sbjct: 482 RRTEITVGEESILDE-DLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +H H+L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++I
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D +L T G IKK L+ +++IR G+IAI L D L V+ +
Sbjct: 601 PIEEFVEDSYLFFATRQGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + GM I +RS+ R+ G + L + D + MDI+ L
Sbjct: 661 IGTAEGMSIRFHESDVRSMGRSATGVKGISLDESDAVIGMDIVDTDLD------------ 708
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P++ +R + G G K + D+ VVG +
Sbjct: 709 ---------ILIVTAKGYGKRTPVADYR---IQSRGGKGIKTINVTDKNGP--VVGLKVV 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++E +++++ SGTV R + +IS R +GV L+ +
Sbjct: 755 ---KTEEDLMIITASGTVIRTSMDEISTMGRNTQGVRLINI 792
>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
Length = 811
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/828 (43%), Positives = 537/828 (64%), Gaps = 32/828 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++ +E+ S++ YSMSV++ RALPDVRDGLKPVHRRIL+A +E G++ KP +K
Sbjct: 7 KVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPHRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VG VLG++HPHGD AVYD++VRMAQDFS+RY L+ GHGNFGS+D D AAMRYTE R
Sbjct: 67 ANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L AL+ ML DI++DTV+F PN+D++++EP +LPARLP LL+NG++GIAVGMAT+IPPH
Sbjct: 127 LTALAVEML-RDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+V+ L L+ NPEAT+ EL+ Y+ GPDFPT GLIMG G+ AYRTGRG +TVRG+
Sbjct: 186 NLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVTVRGR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K R +++ EIPY NK+ LVE+IAELV+ K +DGI+D+RDESDR G+RIV
Sbjct: 246 CEIE--EKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
++++R PS+++N LYR T LQ +F ++ ++DG+P+ + LKE+L +L+ R V+ R
Sbjct: 304 MDIRRDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L ++R HIVEG+ + LDNLD V+ I+R +P TA L F L+E QA+AI
Sbjct: 364 RTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSRFDLTEMQAEAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
++M LR+LT LER K +E + L+ +I LE++L + + +I++++I++K RF R
Sbjct: 424 VEMRLRQLTGLERNKLEEEYRELVGRISDLEDILRRPERVQAIIKEDLIDIKTRFGDKRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + D+ + D+I + +++ +S +GY+KR +T+ Q RG G + +R D
Sbjct: 484 TEIREEDA-SFEAEDLIEEESIVVTLSNRGYIKRQPLSTYRSQRRGGKGVTGTAIRSEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+D V +L+F++ G VYS +AY++PE +R + GTP++ L L+ GE++ ++I V
Sbjct: 543 ATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEASRQSRGTPVINFLRLNPGEKVNTVISV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ F Q LVM T G +KKV ++ F IR +GIIAI L DEL V+ D + +
Sbjct: 603 NRFDAGQHLVMATRTGMVKKVPIDEFRQIRRSGIIAINLRNQDELVGVQKIYKGDRLVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I+ +R + R G + L+ GDK+ +D
Sbjct: 663 TGRGYSIVFDEGDVRVMGRGAAGVRGISLEQGDKVIDID--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K G +L V+E G+GKR +S ++L L + G G K V G ++
Sbjct: 702 KYKEGADMLLVTERGYGKR---TSLQELRLQKRGGKGLKTIQISEKTGELVGGKAVF--- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
E+ V ++ +G V R+KV D+ Q RY+RGV++MR E + I S +
Sbjct: 756 -PKEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIA 802
>gi|226947229|ref|YP_002802320.1| DNA gyrase subunit A [Clostridium botulinum A2 str. Kyoto]
gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
Length = 846
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ +D + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G A+ L+ DK SMD++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVV-----------IEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------TLLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|373453208|ref|ZP_09545104.1| DNA gyrase, A subunit [Eubacterium sp. 3_1_31]
gi|371964047|gb|EHO81585.1| DNA gyrase, A subunit [Eubacterium sp. 3_1_31]
Length = 844
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/841 (43%), Positives = 548/841 (65%), Gaps = 45/841 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ V++ +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI+++TV+F PN+D + EP ++PAR P L++NGA GIAVGMATNIPPH
Sbjct: 127 MSKIA-MELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NL E +D A++ +P+ T+ EL++ Y+ GPDFPTGG+I+G GI AY TGRG I R
Sbjct: 186 NLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIITRS 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K VE + + R +++ EIPYQ NK+ L+ KIA+LV K +DGI+ + DES+R G+RI
Sbjct: 246 KYHVEEMGNGKNR--IVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ +V+N L+RLT+LQ+SF NM+ +++G PKQMG+KE+LQ ++D + VV
Sbjct: 304 VIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F L + ++R HI+EG+ + LD++D +IR++RE+ +++ A + L + FKL+E QA+A
Sbjct: 364 RRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + L++ I L+++L++ ++Q+I+ E+ E+KNRF PR
Sbjct: 424 ILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRFGDPR 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + +AD ++D D+IP +++++ ++ GY+KRM +T+ QNRG G+ V + VN
Sbjct: 484 RTEISEADY-SMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRG--GRGVKGMSVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + HD+++ F++ G VY + YKIP R A G P+V +L+L E++ ++
Sbjct: 541 DDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNLDKEEKVRAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PV+ + ++L+ +T NG +K+ ++ F SIR G IAI L DEL V+ T DD +
Sbjct: 601 VPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D IR++ R G + DG ++ A +D
Sbjct: 661 IIAGSNGKAVRFHEDGIRAMGRTASGVKGFNV-DGSV-----VVGVATSRD--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL--IGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G+GKR + +R G+ I D ++ V G
Sbjct: 706 -------GTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVSVRAVNG-- 756
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DE V++++ +G + RI V +I I +R +GV L+ + G+ +S + I++ +
Sbjct: 757 -------DEDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINV---GEDESVAKIAIVDK 806
Query: 918 E 918
E
Sbjct: 807 E 807
>gi|374709303|ref|ZP_09713737.1| DNA gyrase subunit A [Sporolactobacillus inulinus CASD]
Length = 831
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/841 (42%), Positives = 542/841 (64%), Gaps = 38/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ PV + ++M S+++Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVKPVNIGKQMRDSFLSYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGITSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVYD++VRMAQDFS RY L+ GHGNFGS+D DPAAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDPAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S M+ DI +DT++F PN+D++++EP +LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKISMEMV-RDIRKDTIDFQPNYDDNEEEPKVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + L +PE +++EL++Y+PGPDFPTGGLI+G G+ AYRTGRG I VR K
Sbjct: 187 QLGEVIDAVLTLSKDPEMSIEELMQYIPGPDFPTGGLILGREGVRRAYRTGRGSIIVRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E +S + + +I+ E+PYQ NK+ L+E+IAELV +K ++G++D+RDESDR GMR+V
Sbjct: 247 VEIE--ESANGKQSIIVTELPYQVNKAKLIERIAELVRDKKIEGVTDLRDESDRQGMRMV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE++R + ++++N+LY+ T LQ+SF NM+ ++DG+P+ + LKE L +L + +V+ R
Sbjct: 305 IEVRRDTNANVLLNNLYKHTGLQTSFGINMLALVDGRPRILNLKECLHYYLKHQETVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L D F L+E QA AI
Sbjct: 365 RTAFELKKAEARAHILEGLRIALDHLDEVIALIRHSKTADIARQGLMDNFDLTEIQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E L+++I +L+ +L+ + +L +I +E+ E+K +++ R
Sbjct: 425 LDMRLQRLTGLEREKIEQEYAELVKRIAELKAILADEQKVLHIIRKELREIKEKYNDTRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D ++D D+I +++++ +S GYVKRM N + QNRG G +D
Sbjct: 485 TEITVGDD-MIEDEDLIEREDIVITVSHNGYVKRMPVNAYRSQNRGGRGMQGMGTNEDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ H H+L+F+++G VY + Y+IPE R A G P++ ++ + E IT+ PV
Sbjct: 544 VEHLFQTNTHHHILFFTNKGRVYQLKGYQIPELGRTAKGIPIINLIQIQKDEYITAFFPV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F FLV LT NG K+ L+ FS+IR +G+ AI + DEL VR + +
Sbjct: 604 EDFDEKHFLVFLTKNGITKRSPLSDFSNIRKSGLFAITVREEDELISVRLTDGSCDIIVG 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I +R++ R G A+ L +GD + M I D H +V
Sbjct: 664 TKKGMAIRYHETDVRAMGRTAAGVKAITLDEGDSVVGMGI-------------ADDHLDV 710
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLA 859
L V+E+G+GKR P +R P R G + D+ L A+ V S
Sbjct: 711 --------LIVTENGYGKRTPCDEYR--PQTRGGKGLKTCNITDKNGGLIALRTVSKS-- 758
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E +++++ +G + R+ V IS R GV L+R++ + + + I +E E
Sbjct: 759 ------EDLMIITANGVIIRMPVSGISQLGRNTMGVTLIRVDEGDSVATIARIQNSEDEV 812
Query: 920 D 920
+
Sbjct: 813 E 813
>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
Length = 837
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/859 (42%), Positives = 551/859 (64%), Gaps = 49/859 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V++ +EM S++ YSMSV++ RALPDVRDG+KPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI+++TV+F+PN+D + EPS+LPAR P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAMEMM-KDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NL E +D A++ NP+ ++ EL++ Y+ GPDFPTGG+I+G GI A+ TGRG I VR
Sbjct: 186 NLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSILVRS 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K +E + + R +++ E+PYQ NK+ L+ KIA+LV K ++GI+ + DES+R G+RI
Sbjct: 246 KHHLEDMGNGKTR--IVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ A P +++N LYR+T LQ+SF NM+ ++D PKQMG++E LQ ++D + V
Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDVTV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F+L + ++R HI+EG+ + LD++D +I ++R + +++ A A L ++FKL+E QA+A
Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQFKLTEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + LM I L ++L++ +L +I E+ E+KNRF R
Sbjct: 424 ILEMRLRRLTGLERDKIENEYRELMATIADLRDILANHDRVLSIIRDELTEVKNRFGDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + +AD + D D+IP +++++ ++ GY+KRM +T+ QNRG G+ V + VN
Sbjct: 484 RTEISEADY-DMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRG--GRGVKGMSVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + I HD+++ F++ G VY + YK+P R A G P+V +L+L E++ ++
Sbjct: 541 DDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNLDKEEKVRAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PV + FL+ +T NG +K+ ++ F SIR G IAI L DEL V+ T DD +
Sbjct: 601 VPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D IR++ R G + DG ++ AA K+
Sbjct: 661 IIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV-DGSI-----VVGAATSKE--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVFVVG 855
G LL VSE+G+GKR + +R L G G K + L +V V
Sbjct: 706 -------GTHLLAVSENGYGKRTAIEEYR---LTTRGAKGVKTINVTNKTGELVSVRAVN 755
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
DE ++V+ SG + RI V DI I +R +GV L + +SG +S + +++
Sbjct: 756 --------GDEDAMIVTDSGIIIRISVGDIGIYSRNTQGVKL--INVSGD-ESVAKVAIV 804
Query: 916 EPETDLFLPSTSDKLATES 934
E E D+ S + ++ S
Sbjct: 805 EKEEDVEEASDQEAVSENS 823
>gi|420157470|ref|ZP_14664304.1| DNA gyrase, A subunit [Clostridium sp. MSTE9]
gi|394756176|gb|EJF39301.1| DNA gyrase, A subunit [Clostridium sp. MSTE9]
Length = 850
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/818 (44%), Positives = 532/818 (65%), Gaps = 33/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R++ V+L +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+ M E GL K ++KC
Sbjct: 8 RVINVDLEKEMKQSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMFENGLMPEKGYRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VG VL ++HPHGD +VYD+LVR+AQDFS+RY L+ GHGNFGS+D DP AA RYTE R
Sbjct: 68 ADTVGAVLARYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSVDGDPPAAYRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +L DI++DTV+F PN+D+ KEP +LP R P +L+NG++GIAVGMATNIPPH
Sbjct: 128 L-GKPAVRMLTDIEKDTVDFRPNYDDRLKEPVVLPVRFPNILINGSTGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D LCALI NP+AT++EL+E++ GPDFPTGG+IMG GI AY TGRGRI VR +
Sbjct: 187 NMCEVIDGLCALIDNPDATMEELMEHIKGPDFPTGGIIMGRSGIRAAYGTGRGRIIVRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K+ R ++I E+PYQ NK+ L+E IA+LV++K ++GIS+I D SDR+GM +V
Sbjct: 247 AEIE--EEKNGRFKIVISELPYQVNKARLIETIADLVKDKRIEGISNIEDHSDRNGMHVV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I++KR A P IV+N LY T +Q++F M+ I+DG+PK + LKE+LQ ++ F+ SV+ R
Sbjct: 305 IDVKRDASPQIVLNHLYTYTQMQTTFGVIMLAIVDGEPKTLTLKEILQEYVRFQESVIVR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + +ER HI+ G+ + +DN+D VI I+R + S A L + F+L + Q AI
Sbjct: 365 RTQFELRKAQERAHILRGLQIAIDNIDEVISIIRSSKSIPMAKERLTERFELDDIQTQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+ M L RLT LER+K DE LM +I LE++L++ L +I++E + +K F R
Sbjct: 425 VQMPLGRLTGLERQKLEDELAALMVKIADLEDILANVPRQLAIIKEEALAVKAEFGDERR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + SG++D D+IP +E +L ++ GYVKR K +T+++Q RG G S R D
Sbjct: 485 TEIATI-SGEVDIEDLIPQEECVLTMTNFGYVKRQKVDTYHIQRRGGRGVSGMTRREEDV 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
++ + +HD+VL+FS+ G VY + Y++PE +R + G + +L LS GE +TS++ V
Sbjct: 544 ATEMFIINSHDYVLFFSNLGRVYRLKCYEVPEGSRTSKGINIANLLPLSSGESVTSMVRV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + +LVM+T NG IK+ L+ +++ R G+IAI L GD L WVR + + +A
Sbjct: 604 PEFDEESYLVMVTKNGIIKRTVLSAYNTARKGGVIAIDLDEGDSLSWVRRTDGNREMLVA 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I +R++ R RG A+ LK+GD + + I
Sbjct: 664 TKKGMSIRFRETDVRAMGRTARGVKAITLKEGDCVTGLSTI------------------- 704
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L VSE+G+G+ P++ +R GL+ Y +A++ VV
Sbjct: 705 --REGGLVLTVSETGYGRLSPITDYRTQSRGGKGLLNYHVEKYGDVASIKVV-------- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ D+ V+++S G + RI I + AR ++GV +MR+
Sbjct: 755 DPDDDVIIISSDGVIIRIHAASIRVCARPSKGVRVMRV 792
>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
Length = 833
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/840 (43%), Positives = 552/840 (65%), Gaps = 33/840 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P + V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KPFK
Sbjct: 6 TPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL +S +L DI +DT+++ N+D S++EP ++PAR P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARLSKIS-MEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NPE T QEL++ +PGPDFPT G I+G GI AY TGRG IT+R
Sbjct: 185 PHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K+++E S +R ++I EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKSDIEETSSGKQR--IVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R A+ +++N+LY+ T LQ+SF N++ ++DGQPK + LK+ L+ +L+ + ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ + LD+LD VI ++R + + A L + + LSEKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K DE K L++ I +L+ +L+ + +L++I +E+IE+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELIEIKERFNDT 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + A ++D D+IP + +++ ++ GY+KR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPVSEF + +L T +G K+ +L+ F++IR G+IA+ L DEL VR +
Sbjct: 601 IIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELMAVRLTNGEKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++ GM+I + +R + R G + L + D + M+I+ +
Sbjct: 661 IIIGTKKGMLIRFAETDVREMGRTAAGVKGITLSEDDIVVGMEIL-------------EP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+NV L V+E G+GK P +R GL K + D + V
Sbjct: 708 DANV--------LIVTERGYGKLTPEKEYRVQTRGGKGLKTCKIT--DNNGPLVTVK--- 754
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
A + E++E +++++ SG + R+ V DIS R +GV L+RL + + +L+ ++ +
Sbjct: 755 ATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQED 814
>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
Length = 793
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/813 (43%), Positives = 538/813 (66%), Gaps = 35/813 (4%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+KK AR+VGEV+GK+HPHGD+AV
Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
Y+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE R+ ++ +L DI +DT++
Sbjct: 61 YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIA-MEILRDITKDTID 119
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
+ N+D +++EP ++P+R P LL+NGA+GIAVGMATNIPPH LGE+++ + A+ NPE T
Sbjct: 120 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 179
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKE 341
QEL+EY+PGPDFPT G I+G GI AY +GRG IT+R K E+E S +R +I+ E
Sbjct: 180 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKER--IIVTE 237
Query: 342 IPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRL 401
+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMRIVIE++R A+ +++N+LY+
Sbjct: 238 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 297
Query: 402 TALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGI 461
TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+ RR ++L + + R HI+EG+
Sbjct: 298 TALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGL 357
Query: 462 MVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDE 521
+ LD+LD VI ++R + + A L ++F L+EKQA AILDM L+RLT LER+K +E
Sbjct: 358 RIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEE 417
Query: 522 SKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPN 581
++L+ I +L+++L++ +L++I +E+ E+K RF+ R + + + ++D D+I
Sbjct: 418 YQSLVALIAELKDILANEARVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIER 477
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMSDFIVCRAHDHVLYFS 639
+ +++ ++ GYVKR+ +T+ Q RG GK V + N D + I HD +L+FS
Sbjct: 478 ENIVITLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTNEDDFVEHLISTSTHDTILFFS 535
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
++G VY ++ Y+IPE R A G P++ +L + GE I +IIPVS F +Q+L T G
Sbjct: 536 NKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVSTFDEEQYLFFTTKQGV 595
Query: 700 IKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL 759
K+ +L+ F++IR G+IA+ L DEL VR + + ++NG++I + +R +
Sbjct: 596 SKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQM 655
Query: 760 SRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHG 819
R G + L D D + M+I+ EDSH +L V+E+G+G
Sbjct: 656 GRTAAGVKGITLTDDDVVVGMEIL-----------EEDSH----------VLIVTENGYG 694
Query: 820 KRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNR 879
KR P S +R GL K + D + V A GE D +++++ SG + R
Sbjct: 695 KRTPASEYRVQSRGGKGLKTCKIT--DSNGPLVTVK---ATKGEED--LMIITASGVLIR 747
Query: 880 IKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ + DIS R +GV L+R+ + + +L+
Sbjct: 748 MDINDISTTGRVTQGVRLIRMSDQEHVATVALV 780
>gi|384133794|ref|YP_005516508.1| DNA gyrase subunit A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339287879|gb|AEJ41989.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 819
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/833 (43%), Positives = 545/833 (65%), Gaps = 36/833 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ +E+ S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AM+E G++ KP+KK +
Sbjct: 10 ILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGKFHPHGD AVY++LVR+AQDFS RYPLI GHGNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDTAAAMRYTESRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A++ LL DI+++TV+F+PN+DE ++EP +LP+R P LL+NG+SGIAVGMATNIPPHN
Sbjct: 130 SAIA-LELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D + LI P+ATL +L+ + GPDFPTGG+I+G GI AY TGRG ITVR T
Sbjct: 189 LREVIDGVVMLIDRPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGSITVRAVT 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E L R +++ EIPYQ NK+ +VEKIAEL K +DGI+D+RDESDR GMR+VI
Sbjct: 249 HFEELSGGKTR--IVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+R P +V+N+L++ TALQ+SF + +++G+PK + L+E L+ +L+ + VV RR
Sbjct: 307 ELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRDVVRRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++ L++ + R HI+EG+ + LD+LD VI ++R + + A L F LSE+QA AIL
Sbjct: 367 TQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAIL 426
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K E + L ++I +L+ +L+ K + +I QE++E+K RF R +
Sbjct: 427 DMRLQRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEIKERFGDERRT 486
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ +A+ G + + D+IP ++++A++ +GY+KR+ +T++ Q RG G ++ D +
Sbjct: 487 RIVNAE-GDISEEDLIPVHDVVIALTHRGYIKRLPLSTYHSQRRGGRGMTLINAHEEDFV 545
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD++L+F++RG +Y+ +AY +PE +R A GTP+V +L++ GE++T++IPV
Sbjct: 546 TGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFSRQARGTPIVNLLNIEQGEKVTAMIPVK 605
Query: 684 EF----AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
GD +L T G +KK L +S++R G+IAI L D+L V+ +
Sbjct: 606 SLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDDDLVGVKLTDGTKEI 665
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
M ++NG+ I +R + R G + L +GD++ +MD+ ED H
Sbjct: 666 MMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGDEVIAMDV------------AEDDH 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P+S +R G+ + ++ A +
Sbjct: 714 D---------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCM----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
D+ V++V+Q+G RI VRD+S +R +GV L+ ++ ++ S S +
Sbjct: 760 --VTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV 810
>gi|399924563|ref|ZP_10781921.1| DNA gyrase subunit A [Peptoniphilus rhinitidis 1-13]
Length = 809
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/832 (43%), Positives = 545/832 (65%), Gaps = 38/832 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+++++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M EL L+S P++K A
Sbjct: 11 ILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQELNLASNGPYRKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+++Y++ VR+AQDF+ RYPL+ G GNFG+ID D AAAMRYTE R+
Sbjct: 71 RLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYPLVDGQGNFGNIDGDGAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+E ML DI+++TV+FVPNFDE++KEP++LPAR P LL+NG+SGIAVGMATN+PPHN
Sbjct: 131 TKLAEEML-KDINKNTVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMATNMPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E +D + A I N E ++ EL E + GPDFPTG IMG GI AY TGRG+ITVR T
Sbjct: 190 MNEAIDGIIAYIDNDEISISELNEIIKGPDFPTGAKIMGTEGIKSAYETGRGKITVRAVT 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E++ K+ R ++I E+PYQ NKS L+ KIA+L +NK ++GIS+I D S+R G+ I+I
Sbjct: 250 EIKSF--KNNREKIVITELPYQVNKSSLIMKIADLAKNKVIEGISNITDASNRKGINIII 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+ +V+N LY+ T +Q++F + +++G+P+ + LKE+++ ++D + VV RR
Sbjct: 308 ELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGKPEILNLKEIIRYYVDHQVEVVTRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R HIVEG+ + LDN+DR+I+IVR + ++ A EFKL+E Q+ AIL
Sbjct: 368 TKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRSSKDDNEAKEKFYKEFKLTEAQSQAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM +RRLT LER+K E + L I +E+L + ++ LI+ E++E+K+++ R +
Sbjct: 428 DMRIRRLTGLEREKLEAEYEKLKADIKWYKEILENNDVLMNLIKDELLEIKSKYGDLRRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ + ++ ++ DII +++++ +++ GY+KRM T+ Q RG G S G +R D +
Sbjct: 488 VISNGNT-DIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVSSGNMRDEDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD +L+F+ G V+ +AY+IP+ +R + GT ++ +L L +GE ITSIIPV
Sbjct: 547 KELFVTSTHDTILFFTSLGNVFKLKAYEIPQDSRTSRGTAIINLLDLEEGENITSIIPVE 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ D +M+T G IK+ + +IR +GIIAI+L D+L V ND+ V + +
Sbjct: 607 GYDPDMNFLMITEKGLIKRTPFKDYKNIRKSGIIAIKLNEDDKLIDVHLTKNDEDVILVT 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G+ I + + +R RN+ G ++ L D D + S D+I
Sbjct: 667 KKGLSIRFNEEQVRKSGRNSIGVKSIDLSDDDIVVSSDLI-------------------- 706
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAED-RLAAVFVVGFSLAE 860
++L +SE+G+GK +S +R P NR GL+ YK + + +AA VV
Sbjct: 707 -CENKYVLVISENGYGKLTEISKYR--PQNRGGKGLLTYKITKKTGDVAAAAVV------ 757
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E ++ V++++ SG + RI DISIQ R GV LM L + + A+ I
Sbjct: 758 --EKEDDVMIIADSGIIIRILTGDISIQGRNTSGVKLMNLTDAKVVAVANYI 807
>gi|406911950|gb|EKD51646.1| hypothetical protein ACD_62C00210G0002 [uncultured bacterium]
Length = 820
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/835 (43%), Positives = 536/835 (64%), Gaps = 33/835 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ + L +EM SY+ YSMSV++GRALPD+RDGLKPVHRRIL+AM GL S K + KCA
Sbjct: 14 IIGINLEDEMRDSYLDYSMSVIIGRALPDIRDGLKPVHRRILYAMFREGLLSSKRYSKCA 73
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEVL K+HPHGD+AVYDSLVRMAQ +++RYPLI G GNFGS+D D AAA RYTECR+
Sbjct: 74 GVVGEVLKKYHPHGDSAVYDSLVRMAQPWNMRYPLIDGQGNFGSVDGDSAAAYRYTECRM 133
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+EAM+ ADID+DTV FVPNFD++ EPS+LP R+P LL+NG+ GIAVGMAT IPPHN
Sbjct: 134 TRLAEAMM-ADIDKDTVKFVPNFDDATVEPSVLPTRVPNLLINGSDGIAVGMATKIPPHN 192
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++ L LI P+ T++EL++ +PGPDFPT I G GI AYRTGRG++ +R T
Sbjct: 193 LTEIITALVCLIERPQITVEELIKIVPGPDFPTAAFIYGRAGIHSAYRTGRGKVIMRANT 252
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E R +I+ EIPYQTNK+ ++E IAELV N LDGI+D+RDESDR GMR+VI
Sbjct: 253 EIEPYGKAKDREAIIVTEIPYQTNKAKILETIAELVNNDKLDGIADLRDESDRQGMRMVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+GA+ ++++N LY+ TALQSSF M+ I+DG+P+ + LK +L+ F+ R VV RR
Sbjct: 313 ELKKGANANVILNQLYKHTALQSSFGIIMLSIVDGRPQVVNLKGMLEEFIRHRRQVVLRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L++ ++R HI+EG+ + ++N+D VI +++++P+ A AL++ F LS+ QA AIL
Sbjct: 373 TAFELAEAQKRAHILEGLKIAVENIDEVIAMIKKSPNPDVAKTALRNRFGLSDIQAQAIL 432
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
D+ L+RLT LER K + E + ++ I +L+E+L+S ++ +I++E++E++ +F R +
Sbjct: 433 DLRLQRLTGLERDKILQEYEEVLTLITRLKEILASATLVMSIIKEELLEIREKFGDARRT 492
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D + ++ D+I ++M++ +S GY+KR+ T+ Q RG GK R D +
Sbjct: 493 QIIDTELEDINIEDLIQKEDMVVTVSHLGYIKRLPLTTYRTQRRGGKGKQGMMTREEDFV 552
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
HD +L F+++G V+ + Y+IPE +R A G + ++ L+ E+I +I+P+
Sbjct: 553 EKIFTASTHDLMLVFTNQGRVHWLKVYEIPEASRTAKGKSISNLIQLAGDEKIATILPIE 612
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F D +V T G IKK +L+ +S+ R GIIAI L DEL V+ + + +++
Sbjct: 613 KFTDDDLIVFATRAGTIKKTALSAYSNPRVGGIIAITL-NNDELISVKLVQKNQDIILST 671
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+G I IRS+ R G + LKD D + MD++
Sbjct: 672 AHGQSIRFDESQIRSMGRLAAGVRGITLKDSDTVVGMDVV-------------------- 711
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G +L +S G+GKR L +RK G+I K + ++ V A +
Sbjct: 712 -EPGKTILTISAKGYGKRTELDEYRKQSRGGSGIITLKVT--EKTGQVIN-----ATEVT 763
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D+ ++L++ G + R +V++ISI R +GV L+ ++ + + SA++ EPE
Sbjct: 764 EDDHLMLITNGGKIIRQEVKNISIIGRNTQGVRLIDVDENELVVSATIF---EPE 815
>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
Length = 821
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/817 (43%), Positives = 535/817 (65%), Gaps = 37/817 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + EE+ S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG ++ KP+KK AR+V
Sbjct: 12 INITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+++YD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ML DI++DT+++ N+D S+KEP +LP+R P LL+NGA+GIAVGMATNIPPH+LGE
Sbjct: 132 AMEML-RDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHLGE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+D + AL NP T +EL+E +PGPDFPTGGLI+G GI AY +GRG I +R K E+E
Sbjct: 191 TIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSIIIRAKVEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + +++ E+PYQ NK+ L+EKIAELV +K +DGI+++RDESDR GMR+VIE++
Sbjct: 251 --QKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEVR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+ ++V+N+LY+ TA+QSSF NM+ +++GQPK +GLKE+L +L+ + ++ RR F
Sbjct: 309 KDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVIIRRRTEF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + ++R HI+EG+ + LD++D +I I+R + S A L + F LSE+QA AILDM
Sbjct: 369 DLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RL+ LER+K E + L I +L+ +L+ I+ +I E++ELK+R+S R + +
Sbjct: 429 LVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSDTRRTEIT 488
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMS 624
++D D+IP + ++ ++ GY+KR+ NT+ Q RG G+ V + N D +
Sbjct: 489 SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRG--GRGVQGMGTNEDDFVE 546
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ HD +L+F+ +G V+ A+ Y+IPE R A G P+V +L++ GE++T++I V
Sbjct: 547 HLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNIDKGEKVTAMIRVGS 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D + + T G K+ ++ F++IRT G+IAI L D+L VR D + + ++
Sbjct: 607 FDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTR 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+GM++ D IRS+ R G ++L+DGD++ M+I+
Sbjct: 667 DGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEIV--------------------- 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGE 863
G +L V+E G+GKR +R VGL + + ++ + AV V DG
Sbjct: 706 EPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVAVKTV------DGS 759
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D ++L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 760 ED--IMLITINGMLIRMDVNDISLIGRSTQGVRLIRL 794
>gi|375311493|ref|ZP_09776748.1| DNA gyrase subunit A [Paenibacillus sp. Aloe-11]
gi|375076673|gb|EHS54926.1| DNA gyrase subunit A [Paenibacillus sp. Aloe-11]
Length = 854
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/821 (42%), Positives = 536/821 (65%), Gaps = 35/821 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P+I+ ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+K
Sbjct: 6 NPQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD AVYD++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL ++ ML D++++TV+F+PN+D + EP +LPAR P LL+NG GIAVGMATNIP
Sbjct: 126 ARLSKIAMEML-RDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D + ALI NP+ T EL++Y+ GPDFPT G I+G GI AY+TGRG +T+R
Sbjct: 185 PHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT +E + +K++ +I+ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKTTIEEIGNKAR---IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R +P++V+N+L++ TA+QS+F NM+ I++ +PK + LK+VL +L + V+
Sbjct: 302 VVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + + R HI+EG+ + LD+LD VI ++R + + A L + F L+ +QA
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E L+++I + E+L++ +L +I +E+ ELK RF+
Sbjct: 422 AILDMRLQRLTGLEREKIENEYNELLQRIAEYREILANEHLVLNIISEELNELKERFADE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + LD+ D+IP +++++ ++ GY+KR+ T+ Q RG G +
Sbjct: 482 RRTEITVGEESILDE-DLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +H H+L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++I
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D +L T G IKK L+ +++IR G+IAI L D L V+ +
Sbjct: 601 PIEEFVEDSYLFFATQQGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + GM I +RS+ R+ G + L + D + MD++ L
Sbjct: 661 IGTAEGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDVVDTDLD------------ 708
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P++ +R + G G K + D+ VVG +
Sbjct: 709 ---------ILIVTAKGYGKRTPVADYR---IQSRGGKGIKTINVTDKNGP--VVGLKVV 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++E +++++ SGTV R + +IS R +GV L+ +
Sbjct: 755 ---KTEEDLMIITASGTVIRTSMDEISTMGRNTQGVRLINI 792
>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
Length = 819
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/838 (44%), Positives = 547/838 (65%), Gaps = 34/838 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + +E+ SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+ELG++ KP+KK AR+
Sbjct: 13 PIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSARI 72
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD+AVY ++VR+AQ+F+ RY LI GHGN+GSID D AAAMRYTE R+
Sbjct: 73 VGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMAK 132
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
+S LL DID++T++F NFDES EP++LPA+LP LLLNGA+GIAVGMATNIPPHN G
Sbjct: 133 ISNE-LLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ D + A+I NP+ T+ EL+ Y+ GPDFPTGG+I G GI++AY+TGRG++ V GK ++
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKI 251
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E +SK+ + +I+ E+PYQ NK+ L+E+IAELV NK L GISD+RDESDR G+R+VIEL
Sbjct: 252 E--ESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIEL 309
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KRG + +++NSLY+ T LQ++F + ++D P+ + LKE+LQ +L R SVV RR +
Sbjct: 310 KRGEESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTK 369
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L + ++R HI+EG + LDN+D VI+I+R + + A L F SE QA AILDM
Sbjct: 370 FELDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMAGFAFSEVQAKAILDM 429
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
L+RLT LER K +E K LM I +L+ +LS I +I++EV ++K FS PR + +
Sbjct: 430 RLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIKEDFSDPRRTEI 489
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
DA ++ D+I ++E+++ +++KGYVKR + + Q RG IG S + +D + D
Sbjct: 490 RDARV-EIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVSATNILEDDIIKD 548
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
+ + D +L F+ +G V+ + Y+IPE ++ A G + I+ L + E +++II V EF
Sbjct: 549 MYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLISNIIKLQEDEMVSTIIKVREF 608
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW--VRCCTNDDLVAMAS 743
D+ + +T G +KK +L LF+SI GI AI L DEL + + T D + +A+
Sbjct: 609 EKDKDIFFVTRKGVVKKTNLELFASINKAGIKAIGLKDDDELIFAGLTSGTLKDEIFLAT 668
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I S + +RS+ R G + L+ D + + II A+ +DL
Sbjct: 669 REGFAIRFSENDVRSMGRTASGVKGITLRPEDVIVAGAIIYAS--EDL------------ 714
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDG 862
SG +L +SE G+GKR L +R G+ K + + +++ V +V
Sbjct: 715 --SGKTILTISEEGYGKRTKLEEYRLQSRGGKGITNLKKNTKTGKISDVKIV-------- 764
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+ +++L++ GT+ R +V ISI R GV +M++ + K+ AS + +T PE +
Sbjct: 765 DDSSEIMLITSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKV--ASTVKIT-PEIE 819
>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 844
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/841 (43%), Positives = 548/841 (65%), Gaps = 45/841 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ V++ +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI+++TV+F PN+D + EP ++PAR P L++NGA GIAVGMATNIPPH
Sbjct: 127 MSKIA-MELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NL E +D A++ +P+ T+ EL++ Y+ GPDFPTGG+I+G GI AY TGRG I R
Sbjct: 186 NLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIITRS 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K VE + + R +++ EIPYQ NK+ L+ KIA+LV K +DGI+ + DES+R G+RI
Sbjct: 246 KYHVEEMGNGKNR--IVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ +V+N L+RLT+LQ+SF NM+ +++G PKQMG+KE+LQ ++D + VV
Sbjct: 304 VIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F L + ++R HI+EG+ + LD++D +IR++RE+ +++ A + L + FKL+E QA+A
Sbjct: 364 RRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + L++ I L+++L++ ++Q+I+ E+ E+KNRF PR
Sbjct: 424 ILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRFGDPR 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + +AD ++D D+IP +++++ ++ GY+KRM +T+ QNRG G+ V + VN
Sbjct: 484 RTEISEADY-SMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRG--GRGVKGMSVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + HD+++ F++ G VY + YKIP R A G P+V +L+L E++ ++
Sbjct: 541 DDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNLDKEEKVRAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PV+ + ++L+ +T NG +K+ ++ F SIR G IAI L DEL V+ T DD +
Sbjct: 601 VPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D IR++ R G + DG ++ A +D
Sbjct: 661 IIAGSNGKAVRFHEDGIRAMGRTASGVKGFNV-DGSV-----VVGVATSRD--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL--IGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G+GKR + +R G+ I D ++ V G
Sbjct: 706 -------GTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVSVRAVNG-- 756
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DE V++++ +G + RI V +I I +R +GV L+ + G+ +S + I++ +
Sbjct: 757 -------DEDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINV---GEDESVAKIAIVDK 806
Query: 918 E 918
E
Sbjct: 807 E 807
>gi|312142415|ref|YP_003993861.1| DNA gyrase subunit A [Halanaerobium hydrogeniformans]
gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium hydrogeniformans]
Length = 832
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/855 (42%), Positives = 551/855 (64%), Gaps = 38/855 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R+ +++ +EM GSY+ Y+MSV++GRALPDVRDGLKPVHRRIL+A+++LG++ KP K
Sbjct: 5 AARVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD AVYD++VRMAQDFS RYPLI GHGNFGS+D D AAAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +++ LL DI+++TV+F PNFDES +EP +LPAR P LL+NG++GIAVGM+T+IP
Sbjct: 125 ARMSSIT-TELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D + LI PE T +EL+ + GPDFPTGG IMG I AY+TGRG++TVR
Sbjct: 184 PHNLGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLTVR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT +E D K R +I+ E+P+Q NK+ L++KIA LV+++ +D ISDIRDESDR GMR
Sbjct: 244 AKTRIE--DLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N LY+ + LQ +FS M+ +++ +PK + LKE+L+ +L+ + V+
Sbjct: 302 IVIELKREATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ L + +R HI+EG + L N+D ++ +++EA TA AL D+++LSE QA+
Sbjct: 362 TRRTKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALMDDYELSEIQAN 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M L+ LT LER K E L +I + +L+ +L ++++E++E+K++++
Sbjct: 422 AILRMRLQSLTGLERNKIDTEYDELQAKITRYRSILADEDKLLNIVKKEILEIKDKYNDK 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D + D+I +++++ ++ +GY+KRM + + Q RG G +
Sbjct: 482 RRTKIMDKVTDLE-IEDLIEEEQIVITMTHQGYIKRMALDLYRSQRRGGKGVIGISTKEE 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H L+FS++G VY + Y+IPE R A GT ++ +L L + ERIT++I
Sbjct: 541 DFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARGTAIINLLELKEEERITAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF D +L+M T NG IKK SL+ + + TG+I I L DEL VR D+ +
Sbjct: 601 PVKEFPEDAYLIMATKNGLIKKTSLDAYDT-NYTGLIGINLRENDELIGVRIIDEDENII 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ S+N I + +RS+ RN+ G +RL + D + M I
Sbjct: 660 LVSKNAKAIHFNESDVRSVGRNSYGVRGIRLSEEDYVIDMGI------------------ 701
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
S+G LL ++E+G+GK+ PL+ +R G++ + ++ +LAA +V
Sbjct: 702 ---DSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKNGQLAAAKIV----- 753
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+++ ++++++ G + R++ +IS R GV ++ +E K+ S + I+ E
Sbjct: 754 ---DANSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVD 810
Query: 920 DLFLPSTSDKLATES 934
+L DK+ TE+
Sbjct: 811 EL---EELDKIETET 822
>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
gi|429247633|ref|ZP_19210872.1| DNA gyrase subunit A [Clostridium botulinum CFSAN001628]
gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
gi|428755346|gb|EKX77978.1| DNA gyrase subunit A [Clostridium botulinum CFSAN001628]
Length = 861
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ +D + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G A+ L+ DK SMD++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVV-----------IEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------TLLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
Length = 856
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ +D + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G A+ L+ DK SMD++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKAITLRKTDKAVSMDVV-----------IEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------TLLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
Length = 876
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/855 (43%), Positives = 546/855 (63%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I P+ + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ELG KP
Sbjct: 3 DLATEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R++ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMDRIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+VD LI N AT+ EL+E +PGPDFPTGG+I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR KTEVE K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 VRAKTEVET--DKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKRG P +V+N+LY T +Q+ F NMV + +GQPK LKE+L+AF+ R
Sbjct: 300 MRIVIELKRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR ++L + +ER HI+EG+ + L N+D +I ++R++P+ + A AL
Sbjct: 360 VVTRRTVYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+ +QA AILD+ L++LT LE + +DE K+
Sbjct: 420 AGMLEKAGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKS 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S + ++++I +E+ +K ++ R++ + A S + D+I +++
Sbjct: 480 LLEQIAELLHILGSTERLMEVIREELEAVKTQYGDERMTEI-SAASADISMEDLITQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS K++ D + +V HD +L FS G V
Sbjct: 539 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKV 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y R +++P +R A G P+V +L L +GERIT+I+PV E++ D+F++ T G +KK +
Sbjct: 599 YWMRVFQLPLASRTARGRPIVNLLPLGEGERITAILPVEEYSADKFILFATAKGTVKKTA 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN +S ++GI AI L DEL V ++ V + S G V+ + D +R++ R
Sbjct: 659 LNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMGRTAT 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L+ D++ S+ I+P ED +L V+E+G GKR P
Sbjct: 719 GVRGINLEGSDRVVSL-IVP----------DEDGA----------ILTVTENGFGKRTPQ 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K S + L VVG + GE+DE ++L++ GT+ R +V +
Sbjct: 758 QEYPTKSRATKGVISIKVSERNGL----VVG--AVQVGENDE-IMLITNRGTLVRTRVSE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSEVGRNTQGVRLIR 825
>gi|452824674|gb|EME31675.1| DNA gyrase subunit A [Galdieria sulphuraria]
Length = 911
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/905 (41%), Positives = 563/905 (62%), Gaps = 49/905 (5%)
Query: 36 FLSSPRRFLSFPPSRPPPSSRTPILASKDEERNGNGSVATVGP--NVSPRIVPVELHEEM 93
+ SS RR+ S P P + + + RN S T +++P EL EE+
Sbjct: 29 WRSSVRRYTSKKPLEPKWRNSKYLQKGAKKVRNIEASATTSSKYKQEDEKVIPTELGEEV 88
Query: 94 TGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKF 153
+ SY+ Y++SV+LGRA+PD RDGLKPVHRRILF M+ LGL S PF+KCARVVGEVLGK+
Sbjct: 89 SKSYLEYALSVILGRAIPDARDGLKPVHRRILFGMYRLGLFSEGPFRKCARVVGEVLGKY 148
Query: 154 HPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLA 213
HPHGD+AVYD+LVRMAQ+F +R L+ GHGNFGS+D DP AAMRYTECRL + ++ LL
Sbjct: 149 HPHGDSAVYDALVRMAQNFVMRVCLVDGHGNFGSVDHDPPAAMRYTECRLSSFAQTALLG 208
Query: 214 DIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCA 273
D+D++TV +PNFD S EP +LPA++P LLLNG+SGIAVGMATNIPPH+LGEL + L A
Sbjct: 209 DLDKNTVTLLPNFDNSDWEPQVLPAKVPNLLLNGSSGIAVGMATNIPPHHLGELCNGLLA 268
Query: 274 LIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDS--K 331
LI NP+ T+++L E++ GPDFPTGG IMG GI Y+TG G I +R KT +E +
Sbjct: 269 LIDNPDITIEQLTEHIRGPDFPTGGTIMGTQGIEAFYKTGHGSIVMRAKTHIEHQKDGIR 328
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
S R +I+ E+PY NK+ +V IAE+V++K L+ I+DIRDESDR G R+VIE+K+GADP
Sbjct: 329 SHRQAIIVDELPYGVNKAAMVSHIAEMVQSKRLENIADIRDESDRDGTRVVIEVKKGADP 388
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
+V+ LY+L+A+Q+SF+ NM+ ++D +P++M LKE LQ FL FR +V RR ++LS+
Sbjct: 389 ELVLYQLYKLSAMQTSFAGNMLALVDNRPRRMTLKEYLQTFLQFRVQIVRRRCEYELSKA 448
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL-------------KDEFKLSEKQ 498
KER+H+++G ++ L LD++I ++R AP ++ A A L K F+LSEKQ
Sbjct: 449 KERKHLLDGFLLVLSCLDQIIALIRSAPDSTIAKAVLMGQKDTLEYNKKHKLSFQLSEKQ 508
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A+AIL M LRRLT LE ++ E+K L +I L+++L + + +I E+ +RF+
Sbjct: 509 AEAILSMQLRRLTQLEWQRVEMEAKQLTSEIEDLQDVLQKEQRVYGIIADELKTCASRFN 568
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR +M+ + + + IPN++ LL ++ K ++KRM F Q RGT GK+ LR
Sbjct: 569 YPRQTMI-STERADILETKTIPNEKSLLIVTSKNFIKRMSFTDFESQRRGTKGKTGITLR 627
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER-IT 677
++ + I C HD +L+ +G +YS A++IP +R + G L +L E I+
Sbjct: 628 EDETVEYLIACYGHDTLLFTCKQGRMYSIPAHRIPLESRVSRGNALAMLLDEDCVENGIS 687
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++ +S + D ++V++T G IK+ S +LF G +AI+L G + W++ C +D
Sbjct: 688 GLLSISSLSKDDYVVLVTKQGAIKRCSFSLFEHFNRKGKMAIRLSNGTDSLWLKRCKLND 747
Query: 738 LVAMASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ ++++ G V+ + + R +RG A+RLK D + +D+I + + +
Sbjct: 748 WIVLSTRQGRVLKFQVNEKNLMDTGRTSRGVRAIRLKADDCLIDVDVISS------QTSQ 801
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
E H L V+++G GKR+ S ++G++ KF + R +V
Sbjct: 802 EQCH----------FLAVTKTGKGKRIMASEIPVRKRYQMGVVAIKFDTKRRDE---LVC 848
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
F + +E+VVL + +G + R V DI IQ+R+A+GV + RL+ Q + ++T
Sbjct: 849 FRVCR----NEEVVLCTNTGRIVRQSVDDIPIQSRFAKGVFIQRLD-----QKEEMAALT 899
Query: 916 EPETD 920
PE +
Sbjct: 900 IPEWE 904
>gi|404483765|ref|ZP_11018982.1| DNA gyrase, A subunit [Clostridiales bacterium OBRC5-5]
gi|404343124|gb|EJZ69491.1| DNA gyrase, A subunit [Clostridiales bacterium OBRC5-5]
Length = 824
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/844 (42%), Positives = 546/844 (64%), Gaps = 43/844 (5%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV + ++L + M SYI Y+MSV+ RALPD+RDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y SLV MAQD+S+RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGSLVNMAQDWSMRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ ML ADI++DTV+F PNFDE++KEP++LP+R P LL+NG +GIAVGMAT
Sbjct: 123 YTEARLSKIAMEML-ADINKDTVDFAPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
NIPPHNL E+++ + +I N E+T+ E+L+ + GPDFPTG I+G GI +AY TG
Sbjct: 182 NIPPHNLSEVINAVVRIIDNKIEEKESTIDEMLDIIKGPDFPTGAHILGLRGIREAYTTG 241
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR +E+E + + R +I+ E+PY NK+ L+EKIAELV++K +DGI+D+RDE
Sbjct: 242 RGKIKVRAVSEIEAMPNGKNR--IIVTELPYLVNKAKLIEKIAELVKDKRIDGITDLRDE 299
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S+R GMR+VIEL+R + +++N LY+ T LQ +F NM+ +++ QPK + + ++L+ +L
Sbjct: 300 SNREGMRVVIELRRDVNAGVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYL 359
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR ++ L++ KER HI+EG+++ LDN+D +I+I+R + + S A L F
Sbjct: 360 AHQEDVVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVSVAKEELIKRFG 419
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
L++ QA AI+DM LR LT LER++ E L+ +I E +L+ K +L +I +E++ +
Sbjct: 420 LTDVQAQAIVDMRLRALTGLERERLESEYNELLAKISYFEGILADEKKLLGVIREEILTV 479
Query: 554 KNRFSTPRLS-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
++++ R + ++D D ++D D+I +++++A+++ GY+KRM P+ FN+QNRG GK
Sbjct: 480 EDKYKDDRRTGFIQDDD---MEDEDLIQREDIIIAMTKLGYIKRMSPDNFNVQNRG--GK 534
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ +D + D ++ H+ + +F+++G VY+ + YKIPE +R A G +V +L+L
Sbjct: 535 GIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYNIKGYKIPEASRTARGVAIVNLLNL 594
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
E+I++IIP + D +L M+T G IKK +NLF +IR G+ AI L DEL V
Sbjct: 595 QPDEKISAIIPSEAKSKDGYLFMVTKKGTIKKCQINLFDNIRKNGLAAINLTEDDELIEV 654
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ DD + + S++GM I + IR++ R G MRL D++ M +
Sbjct: 655 KVTHGDDDLIIVSKDGMCIRINDKDIRAMGRGATGVRGMRLNRDDEVIGMQL-------- 706
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G +LL VSE G+GKR +S F+ G+I YK D
Sbjct: 707 -------------ASQGEYLLLVSEYGYGKRTRISEFKVQNRGGKGIICYK----DNEKT 749
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+VG L + D +++L++ G + RI+V IS+ R A GV LM ++ + AS
Sbjct: 750 GKLVGAKLVNE---DRELLLITTEGIIIRIEVSGISVLGRAASGVKLMNIDRESDTKIAS 806
Query: 911 LISV 914
+ V
Sbjct: 807 IAKV 810
>gi|403389402|ref|ZP_10931459.1| DNA gyrase subunit A [Clostridium sp. JC122]
Length = 831
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/842 (43%), Positives = 543/842 (64%), Gaps = 33/842 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N +I+PV++ EM YI Y+MSV+ GRALPDVRDGLKPVHRRIL++MHELGL K
Sbjct: 2 NSEEKILPVDIRNEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMHELGLYPEKG 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++KCAR+VG+VLGK+HPHGD AVYD+LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRY
Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYKLVDGHGNFGSVDGDGAAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE +++ ++ ML DI+++TV+F+PNFD +KEP +LP R P LL+NG++GIAVGMATN
Sbjct: 122 TEAKMDKITTQML-RDINKNTVDFIPNFDGEEKEPVVLPCRFPNLLVNGSTGIAVGMATN 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D + LI + E ++ EL+ + GPDFPT G+I+G GI AY TGRG++
Sbjct: 181 IPPHNLNEVIDGVLMLIEDSEVSISELMTAIKGPDFPTAGIILGKSGIRSAYETGRGKVL 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E ++ R +I+ EIPYQ NK+ L+E IA LV+ K LDGISD+RDESDR G
Sbjct: 241 VRSKAEIE---EENGRHKIIVTEIPYQVNKANLIEAIANLVKEKKLDGISDLRDESDRDG 297
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR A+P+IV+N LY+ T +Q +F M+ ++DG+PK + LK++L +L+ +
Sbjct: 298 MRIVIELKRDANPNIVLNRLYKHTKMQDTFGIIMLVLVDGEPKVLNLKQILSHYLEHQKE 357
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + R HI+EG+ + LD++D+VI ++R + + + A L EF LSEKQ
Sbjct: 358 VITRRTQFDLDKALARAHILEGLRIALDHIDQVIALIRGSKTTAEAKEGLIKEFGLSEKQ 417
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K +E LME + L+ +L S + +L +I++E+IE+KN++
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYNQLMETVKYLKSILESEEKLLNIIKEELIEIKNKYG 477
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E + DD D+I ++++++ ++ GY+KR+ +T+N Q RG G +
Sbjct: 478 DERKTAIE-KNPYSFDDEDLIDDEDVVITLTHAGYIKRLPVDTYNAQKRGGRGVQGANTK 536
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + I +++L+F+++G VY +AY+IPE +R + GT ++ +L + +GE I +
Sbjct: 537 EDDFVENIITTPILNNLLFFTNKGKVYRLKAYEIPEGSRTSKGTNIINVLPIENGETIQA 596
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
I+P+ F + L+M T +G +KK SL+ +++IR G+ AI L DEL V D
Sbjct: 597 IMPIKTFDKNNSLIMGTKSGIVKKTSLDKYAAIRRNGLNAINLRENDELVGVSITKGDSE 656
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V ++NG I S +R + R G A+ L+ D + SM ++
Sbjct: 657 VIFVTKNGYSIRFSEKDVRQMGRVATGVKAITLRKEDVVVSMLVV--------------- 701
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL +SE G GKR ++ + G+I YK + + VVG +
Sbjct: 702 ------KENEELLVISEKGFGKRTNINEYTLQHRGGKGIITYKITEK----TGCVVGARI 751
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D ++++L++ +G + RI V DIS R GV LM+ I + + I+ +EP+
Sbjct: 752 VNDL---DELMLMNSNGIMIRINVSDISTCGRNTMGVTLMKTGEDVNIVAIAKINYSEPK 808
Query: 919 TD 920
D
Sbjct: 809 ED 810
>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
Length = 821
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/817 (43%), Positives = 535/817 (65%), Gaps = 37/817 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + EE+ S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG ++ KP+KK AR+V
Sbjct: 12 INITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+++YD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ML DI++DT+++ N+D S+KEP +LP+R P LL+NGA+GIAVGMATNIPPH+LGE
Sbjct: 132 AMEML-RDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHLGE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+D + AL NP T +EL+E +PGPDFPTGGLI+G GI AY +GRG I +R K E+E
Sbjct: 191 TIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSIIIRAKVEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + +++ E+PYQ NK+ L+EKIAELV +K +DGI+++RDESDR GMR+VIE++
Sbjct: 251 --QKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEVR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+ ++V+N+LY+ TA+QSSF NM+ +++GQPK +GLKE+L +L+ + ++ RR F
Sbjct: 309 KDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVIIRRRTEF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + ++R HI+EG+ + LD++D +I I+R + S A L + F LSE+QA AILDM
Sbjct: 369 DLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RL+ LER+K E + L I +L+ +L+ I+ +I E++ELK+R+S R + +
Sbjct: 429 LVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSDIRRTEIT 488
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMS 624
++D D+IP + ++ ++ GY+KR+ NT+ Q RG G+ V + N D +
Sbjct: 489 SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRG--GRGVQGMGTNEDDFVE 546
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ HD +L+F+ +G V+ A+ Y+IPE R A G P+V +L++ GE++T++I V
Sbjct: 547 HLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNIDKGEKVTAMIRVGS 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D + + T G K+ ++ F++IRT G+IAI L D+L VR D + + ++
Sbjct: 607 FDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTR 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+GM++ D IRS+ R G ++L+DGD++ M+I+
Sbjct: 667 DGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEIV--------------------- 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGE 863
G +L V+E G+GKR +R VGL + + ++ + AV V DG
Sbjct: 706 EPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVAVKTV------DGS 759
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D ++L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 760 ED--LMLITINGMLIRMDVNDISLIGRSTQGVRLIRL 794
>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
Length = 834
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/848 (43%), Positives = 532/848 (62%), Gaps = 42/848 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V + EEM Y+ Y+MSV++GRALPDVRDGLKPVHRRIL+AM ELG++ KP +K
Sbjct: 9 RIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD AVYD++VRMAQ+FS RY I G GNFGSID D AAAMRYTE +
Sbjct: 69 ARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEAK 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M L DI++DTV+F+PNFDES+ EP +LPAR+P LL+NG++GIAVGMATNIPPH
Sbjct: 129 MSKIALEM-LRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD A I NP+ T+ EL+ ++ GPDFPT G+++G GI +AYRTGRGRI +R K
Sbjct: 188 NLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIRSK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E +K R +++ EIPY NKS LVEKIAELV+ K ++GI+D+RDE+D + G+RI
Sbjct: 248 VEMET--TKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRI 305
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-------QPKQMGLKEVLQAFLD 434
VIELKR A+ +I++N LY+ T LQ +F M+ ++ +PK + LK+VL +++
Sbjct: 306 VIELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
+ ++ RR F L + + R HI+EG+ + LDN+D VI ++R A A L + F L
Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMERFAL 425
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
+E QA AILDM L+RLT LER+K +E L + I + + +L+ + +L +I+ E+ E+K
Sbjct: 426 TEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEYKAILADEQLVLNIIKDELTEIK 485
Query: 555 NRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
++ R + D D D D+I +E+++ ++ GYVKR+ +T+ Q RG G +
Sbjct: 486 EKYGDERRTSF-DIDVEDFDVEDLIEEEEVVITMTHIGYVKRISADTYRSQKRGGKGITA 544
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
R ND + H +L+FS++G VY +A+++PE R A GT +V IL L E
Sbjct: 545 LSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVPEGGRTARGTAIVNILQLDPDE 604
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
+IT++IPV EF D+ L+M T G IKK L + S R GII I L GDEL VR
Sbjct: 605 KITTMIPVKEFTADKCLIMATKQGIIKKTDLTEYDSSRKNGIIGINLREGDELINVRLVE 664
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
++ + M +Q G I + +R L R + G + L+D D + MDI+ L
Sbjct: 665 ENEDIVMGTQKGYAIRFTSKEVRPLKRTSIGVRGIELRDDDVVVGMDIVSDDL------- 717
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
++L VS++G+GK +R G+ YK + + +V
Sbjct: 718 --------------FVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKK----TGELV 759
Query: 855 GFS-LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
GF ++ DGE +++++ G V +++ DIS R +GV LM+L+ +I + S +
Sbjct: 760 GFCVISRDGE----IMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVY 815
Query: 914 VTEPETDL 921
+PE D+
Sbjct: 816 KEDPEEDI 823
>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
Length = 809
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/839 (43%), Positives = 535/839 (63%), Gaps = 33/839 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIVPV + EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL++M++LGL KPFKK
Sbjct: 3 RIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKKS 62
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGE LGKFHPHGD AVYD+LVRMAQDFS+RYPLI G GNFGSID D AAAMRYTE R
Sbjct: 63 ARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEAR 122
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI++DTV+F PNFD S +EP +LPA+ P LL+NGASGIAVGMATNIPPH
Sbjct: 123 LSKIA-LELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+ + L+ +PEAT +EL++++ GPDFPTG ++ + Y+ GRG +T+R K
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAK 241
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + KR ++I E+PYQ NK+ L++KIAELV+ K +DGI+DIRDESDR G+R+V
Sbjct: 242 HTIEEV---RKRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVV 298
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A P +V+N LY+LT LQ++F+ NM+ +++G+PK + LK L+ F+ FR V+ R
Sbjct: 299 IELKRDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILR 358
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + + R HI+EG+ L+N+D V+++V+EAPS A L+++F+LSE QA AI
Sbjct: 359 RTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKAI 418
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E L E+ ++ S + +LI++E+ ++ +F R
Sbjct: 419 LDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGDQRR 478
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + +S ++D +I ++E+++ ++ KG+V R+ T+ Q+R G K R D
Sbjct: 479 TKIVSKES-EIDIESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRGIKTREGDF 537
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSIIP 681
+ D I + D++L F+++G VY +AY+IP+ R + G + L ++ E ++ IIP
Sbjct: 538 VKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGNEIVSRIIP 597
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF+ ++ + +T GY+K+ L FS+ R+TGI AI L PGD L +V ++ D + +
Sbjct: 598 VKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVSDKDNIIL 657
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
S+NG I +R + RN RG + L D + + ++ PED
Sbjct: 658 ISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVV----------EPEDR--- 704
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+LL V+E G+GKRV + F GLI K S + A A
Sbjct: 705 -------FLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKVAD-------ATT 750
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+ DE ++LVS+ G + R+K DI + R+ RGV + +L + S S ++ E E D
Sbjct: 751 LKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809
>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
Length = 808
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/816 (43%), Positives = 524/816 (64%), Gaps = 32/816 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+KK
Sbjct: 7 KIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D DPAAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F PN+DES KEP +LPA+ P LL+NG SGIAVGMATNIPPH
Sbjct: 127 MSKIAE-LMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D LI +P+AT+ +L++ + GPDFPT GLI+G GI AY TGRG I +R
Sbjct: 186 NMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRAN 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L + R +I+ E+PYQ NK+ LVEKIA+LV +K ++GI+ + DESDR GMRIV
Sbjct: 246 ARIETLSNGKPR--IIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+L+R A+ ++++N LY+ T LQ SF M+ ++DG+PK + LKEVL ++ + V+ R
Sbjct: 304 IDLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + + R HI+EG+ + LD+LD VI +RE+ + A AAL FKLSEKQA AI
Sbjct: 364 RTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I + + +L+ IL +I+ E+ +K +F R
Sbjct: 424 LDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDARR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L D+ ++D D+I +++++ ++ Y+KRM +T+ QNRG G + D
Sbjct: 484 TRLT-VDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + ++ H +L+F++RG VY +AY+I E +R A GT ++ +L L E+IT++I V
Sbjct: 543 VENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F D +L M T G +KK SL F ++ G+ AI L DEL V+ + + +
Sbjct: 603 KGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I+ D +R++ R RG + L DGD++ MD +
Sbjct: 663 TKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEVIGMDTL------------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+ G+GKR S +R GLI K + + V+G +
Sbjct: 704 --SPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEK----TGDVIGLRVV--- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D++++L++ G V R + DIS+ +R +GV LM
Sbjct: 755 HPDQELMLITTEGIVIRTNISDISVISRNTQGVKLM 790
>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
17244]
gi|169258322|gb|EDS72288.1| DNA gyrase, A subunit [Anaerofustis stercorihominis DSM 17244]
Length = 822
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/823 (42%), Positives = 528/823 (64%), Gaps = 33/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++ RI ++ EEM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++M EL LS KP
Sbjct: 9 DIHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKP 68
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+ +GK+HPHGD+++YD++VR+AQDFS RYPL+ GHGNFGSID D AAMRY
Sbjct: 69 YRKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRY 128
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ ++ M L DI ++TV++ PNFDE+ KEP +LP+R P LL+NG++GIAVGMATN
Sbjct: 129 TEAKMTKMTGEM-LRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATN 187
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+VD + ALI NP + +L++Y+ GPDFPTGG+IMG GI +AY TGRGRI
Sbjct: 188 IPPHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNAYTTGRGRIK 247
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R KT +E + K +R +++ EIPY NK+ +VEKIA+LV +K + GISDIRDESDR+G
Sbjct: 248 LRSKTHIEEISKKRQR--IVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNG 305
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+ I+L++ + SI++N LY+ T LQ +FS + ++D QPK + LKE+L +L+ +
Sbjct: 306 IRVAIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVHYLNHQKD 365
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR + L + K R HIVEG+++ LDN+D +I+I+R S + A L + F LSE Q
Sbjct: 366 IIVRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIR--ASYNDAEEKLMERFDLSEVQ 423
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+DM LRRL LER+K +E L++ I LE +L+S + ++ +I++E+ E+K+++
Sbjct: 424 AKAIVDMRLRRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKYG 483
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + E D D D+I +++++ I+ GYVKR+ +T+ Q RG G + R
Sbjct: 484 DERRTAFE-VDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGVTALSTR 542
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
ND + H ++++F+++G VY + Y+IP+ +R A GT +V +L+L GE+IT+
Sbjct: 543 ENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLALDPGEKITA 602
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ EF D++LVM T NG KK SL + S R GI+AI L DEL V +
Sbjct: 603 VIPIKEFKDDEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQN 662
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + G+ I + +R++ R ++G + LKD D + MDI
Sbjct: 663 IILGTHKGLAIKFNEADVRAIGRVSKGVKGISLKDDDYLIGMDI---------------- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+ ++L V+E G+GK + + G++ YK + + + G +
Sbjct: 707 -----ATDNAYVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTKKTGALS----GMCV 757
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
E + D ++++S GTV RI IS R GV +M L+
Sbjct: 758 IEKEKDD--IMVISIDGTVIRIDTSGISQMGRSTSGVKVMTLD 798
>gi|424835716|ref|ZP_18260375.1| DNA gyrase subunit A [Clostridium sporogenes PA 3679]
gi|365977586|gb|EHN13684.1| DNA gyrase subunit A [Clostridium sporogenes PA 3679]
Length = 826
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/834 (42%), Positives = 541/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ +I+ EIPYQ NKS L+E +A LV++K ++GISDIRDESDR GMRIV
Sbjct: 245 AEIEEEKGKNR---IIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT ++ ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|338814929|ref|ZP_08626894.1| DNA gyrase subunit A [Acetonema longum DSM 6540]
gi|337273096|gb|EGO61768.1| DNA gyrase subunit A [Acetonema longum DSM 6540]
Length = 812
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/831 (42%), Positives = 541/831 (65%), Gaps = 33/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+ + EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+KK
Sbjct: 7 KVLPIRIDEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMQEAGMYSNKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VR+AQDFS RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDAIVRLAQDFSTRYLLADGHGNFGSVDGDSAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ML ADID++TV+F PN+DES +EP++LPA++P LL+NG++GIAVGMATNIPPH
Sbjct: 127 MSRIAEEML-ADIDKNTVDFTPNYDESLEEPTVLPAKIPNLLVNGSAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D L +I NPE T+++L+ + GPDFPTGGLI+G GI AY TGRG + +R +
Sbjct: 186 NLSEVIDALVMMIDNPEVTIKDLMLSIKGPDFPTGGLILGKEGIRQAYLTGRGSVKMRAQ 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +++ EIPYQ NK+ LVE IA LV +KT+DGI+D+RDESDRSGMRIV
Sbjct: 246 ARIEKMSNGKYR--ILVTEIPYQVNKARLVEAIAHLVRDKTIDGITDLRDESDRSGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + +++N LY+ T LQ +F NM+ ++ G+P+ + L++VL +L+ + V+ R
Sbjct: 304 IELRRDVNADVILNQLYKHTQLQDTFGVNMLALVKGRPQVLNLQQVLYHYLEHQKIVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + K R HI+EG+ + LD+LD VI +R + + A AL F LSEKQA AI
Sbjct: 364 RTQFELDKAKARAHILEGLKIALDHLDAVIATIRGSRTVDIAREALIANFSLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L+RLT LER+K E K ++E I LE +L+ +LQ+I +E++++K RF R
Sbjct: 424 LEMRLQRLTGLEREKIEQEYKDVLETIEWLESVLADEAKVLQIIREELLDVKKRFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ +D +L+ D+I +++++ I+ GY+KRM +T+ Q RG G + + D
Sbjct: 484 TVIT-SDVSELEVEDLIAEEDIIITITHNGYIKRMPIDTYRSQKRGGRGVTGMGTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT-RNAAGTPLVQILSLSDGERITSIIP 681
+ + H ++L+F+++G VY + Y+I + R A GT +V ++ L E IT++IP
Sbjct: 543 VEHLFIATTHHNILFFTNQGRVYRLKGYEITDAAGRTAKGTAIVNLVPLEGEELITAVIP 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF+ ++L M T NG +KK + F + R G+IAI L GD+L V+ V +
Sbjct: 603 VKEFSNQRYLFMTTRNGIVKKTEVIEFDTARKGGLIAIILDEGDDLIAVKMTNGQQEVII 662
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G+ I S +R++ R++RG + L+ D + M++
Sbjct: 663 GTSEGIAIRFSEKDVRTMGRSSRGVKGISLEKTDMVIGMEV------------------- 703
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+ G ++ V+ G+GKR + +R G+I +K + D+ V+G + +
Sbjct: 704 --ATKGTEIMTVTAEGYGKRTAVDEYRVQTRGGKGVINHKVT--DKTGQ--VIGIKMIKP 757
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
G ++++L+S G + R++ +I Q R +GV +MR+ + K+ + +++
Sbjct: 758 G---QEIMLISTDGIIIRMEADEIPTQGRSTQGVRMMRIGENDKVGALAVV 805
>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
15579]
gi|187774289|gb|EDU38091.1| DNA gyrase, A subunit [Clostridium sporogenes ATCC 15579]
Length = 846
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/834 (42%), Positives = 541/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ +I+ EIPYQ NKS L+E +A LV++K ++GISDIRDESDR GMRIV
Sbjct: 245 AEIEEEKGKNR---IIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT ++ ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
Length = 795
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/805 (43%), Positives = 534/805 (66%), Gaps = 41/805 (5%)
Query: 102 MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161
MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK AR+VGEV+GK+HPHGD+AV
Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60
Query: 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVN 221
Y+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +S L+ DI ++T++
Sbjct: 61 YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIS-MELIRDITKNTID 119
Query: 222 FVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEAT 281
+ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH LGE++D + AL HNP+ T
Sbjct: 120 YQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDIT 179
Query: 282 LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKE 341
+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K E+E + + + +I+ E
Sbjct: 180 IAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIE--EKPNGKQTIIVTE 237
Query: 342 IPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRL 401
+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV+E++R A+ ++++N+LY+
Sbjct: 238 LPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKH 297
Query: 402 TALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGI 461
TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ RR ++L + + R HI+EG+
Sbjct: 298 TALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGL 357
Query: 462 MVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDE 521
+ LD+LD VI ++R + + A L + F LSEKQA AILDM L+RLT LER+K E
Sbjct: 358 RIALDHLDEVITLIRSSKTADIARQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQE 417
Query: 522 SKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPN 581
+ LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R + + ++D D+IP
Sbjct: 418 YQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPE 477
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI----VCRAHDHVLY 637
+ + ++ GY+KR+ +T+ QNRG G+ V + ND DF+ HDH+L+
Sbjct: 478 QNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND--DDFVEQLLTTSTHDHILF 533
Query: 638 FSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMN 697
F+++G VY + Y+IPE +R A G P++ +L + GE + +IIP+ EF DQ+L T
Sbjct: 534 FTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNAIIPIREFGDDQYLFFTTKY 593
Query: 698 GYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIR 757
G K+ L+ F++IRT G+IAI L DE+ VR + D + + + NGM+I + +R
Sbjct: 594 GISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVR 653
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESG 817
S+ RN G A+ L D D++ M+I+ ++ +L V+++G
Sbjct: 654 SMGRNAAGVKAITLGDEDQVVGMEIVEEDMN---------------------VLIVTKNG 692
Query: 818 HGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGT 876
+GKR P+ +R GL + ++ +L AV V GE D ++L++ +G
Sbjct: 693 YGKRTPIEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV------TGEED--IMLITAAGI 744
Query: 877 VNRIKVRDISIQARYARGVILMRLE 901
+ R+ V IS R +GV L+RLE
Sbjct: 745 IIRMPVDQISQMGRNTQGVRLIRLE 769
>gi|237793327|ref|YP_002860879.1| DNA gyrase subunit A [Clostridium botulinum Ba4 str. 657]
gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
Length = 826
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + ++ +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ +I+ EIPYQ NKS L+E +A LV++K ++GISDIRDESDR GMRIV
Sbjct: 245 AEIEEEKGKNR---IIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
Length = 821
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 542/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + ++ +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K++ +I+ EIPYQ NKS L+E +A LV++K ++GISDIRDESDR GMRIV
Sbjct: 245 AEIEEEKGKNR---IIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V ++ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
Length = 836
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/847 (42%), Positives = 547/847 (64%), Gaps = 37/847 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN +I V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+ S K
Sbjct: 5 PN--SQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY LI GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG++GIAVGMAT
Sbjct: 123 YTEARMSKVS-MELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + A+ +P+ T+ EL+E +PGPDFPT G I+G GI AY TG+G I
Sbjct: 182 NIPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR K E+E + + + +I+ E+PYQ NK+ L+EKIAEL +K +DGI+D+RDESDRS
Sbjct: 242 IVRAKVEIE--EQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R A+ ++++N+LY+ T+LQ+SF N + ++DGQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQV 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDNLD VI ++R + + A L +F LSEK
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K E ++L+ I +L+ +L+ + +L++I +E+IE+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + + ++D D+IP +++++++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + + HD +L+F+++G VY + Y+IPE R A G P++ +L + GE
Sbjct: 538 NTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIINLLEVDKGEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+ +II V EF D +L T G K+ L+ F +IR +G+IA+ L DEL V+
Sbjct: 598 VNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELISVKLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++ GM+I + + +RS+ R G + L D++ M+I+
Sbjct: 658 KRDMVIGTKKGMLIRFNENDVRSMGRTATGVKGITLDSEDEVIGMEIL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ S+V L ++++G+GKR P+ +R GL + D+ V +
Sbjct: 706 -EEQSDV--------LIITKNGYGKRTPIEEYRVQTRGGKGLRTCNIT--DKNGDVVALK 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
E E ++L++ SG + R+ V DIS R +GV ++RL + + + + +
Sbjct: 755 CVSQE-----EDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809
Query: 916 EPETDLF 922
E E ++
Sbjct: 810 EDEDEVL 816
>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 824
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/848 (42%), Positives = 543/848 (64%), Gaps = 41/848 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV + ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQD+S+RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ ML ADI++DTV+F PNFDE++KEP++LP+R P LL+NG +GIAVGMAT
Sbjct: 123 YTEARLSKIAMEML-ADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
NIPPHN+ E++D + LI N + T+ E++ + GPDFPTG I+G GI +AY TG
Sbjct: 182 NIPPHNIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTG 241
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR TE+E + + R +++ E+PY NK+ L+EKIAELV++K +DGI+D+RDE
Sbjct: 242 RGKIKVRAVTEIESMSNGKSR--IVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDE 299
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S+R GMR+VIEL++ + +I++N LY+ T LQ +F NM+ ++D QPK + + ++LQ +L
Sbjct: 300 SNREGMRVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYL 359
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR +++L++ KER HI+EG+++ LDN+D +I+I+R + + + A L F
Sbjct: 360 AHQEDVVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFG 419
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
LS+ QA AI+DM LR LT LER++ E L+ +I E +L+ K +L LI++E++ +
Sbjct: 420 LSDVQAQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVV 479
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
++++ R + D + D+I +++++A+++ GY+KRM P+ FN+QNRG GK
Sbjct: 480 EDKYKDDRRTGFMQDDDMED--EDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRG--GKG 535
Query: 614 VGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
+ ++ +D + D ++ H+ + +F+++G VY+ + YKIPE +R A G +V +L L
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQ 595
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+I++IIP + D +L M+T NG IKK +NLF +IR G+ AI L DEL V+
Sbjct: 596 PDEKISAIIPSEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVK 655
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
DD + + S+ GM I + IR++ R G MRL GD++ M +
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNTGDEVIGMQL--------- 706
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
S G +LL VSE G+GKR +S F+ G+I YK D
Sbjct: 707 ------------ASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK----DNEKTG 750
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+VG L + D +++L++ G + RI+V ISI R A GV LM ++ + AS+
Sbjct: 751 KLVGAKLVNE---DREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASI 807
Query: 912 ISVTEPET 919
+ E +
Sbjct: 808 AKIREEKN 815
>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
Length = 836
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/847 (42%), Positives = 547/847 (64%), Gaps = 37/847 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN +I V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+ S K
Sbjct: 5 PN--SQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY LI GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG++GIAVGMAT
Sbjct: 123 YTEARMSKVS-MELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + A+ +P+ T+ EL+E +PGPDFPT G I+G GI AY TG+G I
Sbjct: 182 NIPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR K E+E + + + +I+ E+PYQ NK+ L+EKIAEL +K +DGI+D+RDESDRS
Sbjct: 242 IVRAKVEIE--EQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R A+ ++++N+LY+ T+LQ+SF N + ++DGQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQV 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDNLD VI ++R + + A L +F LSEK
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K E ++L+ I +L+ +L+ + +L++I +E+IE+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + + ++D D+IP +++++++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + + HD +L+F+++G VY + Y+IPE R A G P++ +L + GE
Sbjct: 538 NTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIINLLEVDKGEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+ +II V EF D +L T G K+ L+ F +IR +G+IA+ L DEL V+
Sbjct: 598 VNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELISVKLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++ GM+I + + +RS+ R G + L D++ M+I+
Sbjct: 658 KRDMVIGTKKGMLIRFNENDVRSMGRTATGVKGITLDSEDEVIGMEIL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ S+V L ++++G+GKR P+ +R GL + D+ V +
Sbjct: 706 -EEQSDV--------LIITKNGYGKRTPIEEYRVQTRGGKGLRTCNIT--DKNGDVVALK 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
E E ++L++ SG + R+ V DIS R +GV ++RL + + + + +
Sbjct: 755 CVSQE-----EDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809
Query: 916 EPETDLF 922
E E ++
Sbjct: 810 EDEDEVL 816
>gi|384049351|ref|YP_005497368.1| DNA gyrase subunit A [Bacillus megaterium WSH-002]
gi|345447042|gb|AEN92059.1| DNA gyrase subunit A [Bacillus megaterium WSH-002]
Length = 836
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/847 (42%), Positives = 547/847 (64%), Gaps = 37/847 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN +I V + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+ S K
Sbjct: 5 PN--SQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY LI GHGNFGS+D D AAAMR
Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG++GIAVGMAT
Sbjct: 123 YTEARMSKVS-MELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIPPH LGE++D + A+ +P+ T+ EL+E +PGPDFPT G I+G GI AY TG+G I
Sbjct: 182 NIPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR K E+E + + + +I+ E+PYQ NK+ L+EKIAEL +K +DGI+D+RDESDRS
Sbjct: 242 IVRAKVEIE--EQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R A+ ++++N+LY+ T+LQ+SF N + ++DGQPK + LK+ LQ +LD +
Sbjct: 300 GMRIVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQV 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDNLD VI ++R + + A L +F LSEK
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K E ++L+ I +L+ +L+ + +L++I +E+IE+K RF
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERF 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + + ++D D+IP +++++++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 480 NDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRG--GRGIQGM 537
Query: 618 RVN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
N D + + HD +L+F+++G VY + Y+IPE R A G P++ +L + GE
Sbjct: 538 NTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIINLLEVDKGEW 597
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+ +II V EF D +L T G K+ L+ F +IR +G+IA+ L DEL V+
Sbjct: 598 VNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELISVKLTDG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + ++ GM+I + + +RS+ R G + L D++ M+I+
Sbjct: 658 KRDMVIGTKKGMLIRFNENDVRSMGRTATGVKGITLDSEDEVIGMEIL------------ 705
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ S+V L ++++G+GKR P+ +R GL + D+ V +
Sbjct: 706 -EEQSDV--------LIITKNGYGKRTPIEEYRVQTRGGKGLRTCNIT--DKNGDVVALK 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
E E ++L++ SG + R+ V DIS R +GV ++RL + + + + +
Sbjct: 755 CVSQE-----EDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809
Query: 916 EPETDLF 922
E E ++
Sbjct: 810 EDEDEVL 816
>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
Length = 837
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/838 (43%), Positives = 537/838 (64%), Gaps = 33/838 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR LFAM+++ KP+KK AR
Sbjct: 8 VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD+LVRMAQDFSLRYPL+ G GNFGSID D AAMRYTE R+E
Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLAD++++TV + PN+D+S KEP +LP++ P LL+NG++GIAVGMATNIPPHNL
Sbjct: 128 QLAHE-LLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D + A+I NP+ T +EL+E +PGPDFPTGG I G GI+ AY TGRG I +R K +
Sbjct: 187 SEVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQ 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E K++R +++ EIPYQ NK+ LVEKIAELV+ K ++GISD+RDESDR GMR+VIE
Sbjct: 247 IET-QKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P+I++N LY+ T +QSSF M+ I+ +P+ + L+E + F++ R +V RR
Sbjct: 306 LKKDENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRT 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F L + + R HI+EG+ + LDNLD VI +++ + S + A L + F LS+ QA AILD
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMERFGLSDLQAQAILD 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS- 563
M L RLT LER K ++E + +++ I +L+E+L+S IL++I E+IELK++F R S
Sbjct: 426 MRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELIELKDKFGDKRRSE 485
Query: 564 -MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ AD + D I ++M++ IS GY+KR + Q RG GK+ K + D
Sbjct: 486 IVMQTAD---ISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + D++++F+D G VY + Y+IPE R A G +V +L+L+ E+IT+I+PV
Sbjct: 543 VEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEKITAILPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+F++M T NG +KK ++ +S R GIIA+ L GD+L V V +A
Sbjct: 603 KEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLISVALTDGKQDVLLA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ NG I D +R++ R +RG M L+D D + M I+
Sbjct: 663 TANGKAIRFKEDDVRTVGRVSRGVRGMALED-DVVIGMAILNEHF--------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+ + V+E+G+GKR +S +R G+I K + + VV D
Sbjct: 707 ---TDSTIFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERNGQ----VVDIKQVND- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D ++L++ G + R++V SI R +GV LM E + ++ + + ++ E + +
Sbjct: 759 --DNDLMLITDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDE 814
>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
Length = 831
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/834 (42%), Positives = 541/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGLS K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVR+AQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + T+ +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E + R +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 ADIE---EEKGRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P++V+N LY+ T LQ +F M+ +++ QP+ + LKE+L +L+F+ V+ R
Sbjct: 302 IELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I ++L + +L +I++E+ E+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYGDERR 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V I+ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+IAI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIVKYSSIRKGGLIAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + +R + R G A+ L++ DK SMD++ ED
Sbjct: 661 TQNGYCIRFNEKDVRPMGRTASGVKAITLREDDKAVSMDVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
Length = 742
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/750 (44%), Positives = 510/750 (68%), Gaps = 32/750 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EM S++ Y+MSV++ RALPDVRDGLKPVHRR+L+AM++LG+++ K +KK
Sbjct: 9 RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI ++T+++ N+D S++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 129 MSKIS-MELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL HNP+ T+ EL+E +PGPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 188 QLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + + +I+ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 248 VEIE--EKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ TALQ+SF NM+ +++G+P+ + LK+ L +L+ + V+ R
Sbjct: 306 MEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 366 RTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSEKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R
Sbjct: 426 LDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP + + ++ GY+KR+ +T+ QNRG G+ V + ND
Sbjct: 486 TEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG--GRGVQGMGTND- 542
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ HDH+L+F+++G VY + Y+IPE +R A G P++ +L + GE I +
Sbjct: 543 -DDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIP+ EF D+FL T G K+ L+ F++IRT G+IAI L DE+ VR + D
Sbjct: 602 IIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKD 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + NGM+I + +RS+ RN G A+ L + D++ M+I+ ++
Sbjct: 662 IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDVN---------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFR 828
+L V+++G+GKR P+ +R
Sbjct: 712 -----------VLIVTKNGYGKRTPIDEYR 730
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 692 VMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI 749
+ LT NGYIK++ + + + G+ + D ++ + + D + + G V
Sbjct: 509 ITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVY 568
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD-IIPAALHKDLERTPEDSHSNVKGSSGP 808
+ I SR +G + L DK ++ IIP D E
Sbjct: 569 RTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE---------------- 612
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L F ++ G KR PLSSF + N GLI ED + +V + D+ +
Sbjct: 613 FLFFTTKQGISKRTPLSSFANIRTN--GLIAISLREEDEVISVRLTS--------GDKDI 662
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGV 895
++ + +G + R +D+ R A GV
Sbjct: 663 IVGTSNGMLIRFNEQDVRSMGRNAAGV 689
>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
gi|424740041|ref|ZP_18168451.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZB2]
gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
gi|422946264|gb|EKU40677.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZB2]
Length = 821
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/817 (43%), Positives = 534/817 (65%), Gaps = 37/817 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + EE+ S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG ++ K +KK AR+V
Sbjct: 12 INITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKAYKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+++YD++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ML DI++DT+++ N+D S+KEP +LP+R P LL+NGA+GIAVGMATNIPPH LGE
Sbjct: 132 AMEML-RDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHQLGE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+D + AL NP T +EL+E +PGPDFPTGGLI+G GI AY TGRG I +R K E+E
Sbjct: 191 TIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSIIIRAKVEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + ++I E+PYQ NK+ L+EKIAELV +K +DGI+++RDESDR GMR+VIE++
Sbjct: 251 --QKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEVR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+ ++V+N+LY+ TA+QSSF NM+ +++GQPK +GLKE+L +L+ + ++ RR F
Sbjct: 309 KDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVIIRRRTEF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + ++R HI+EG+ + LD++D +I I+R + S A L + F LSE+QA AILDM
Sbjct: 369 DLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFSLSERQAQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RL+ LER+K E + L I +L+ +L+ + I+ +I E++ELK RF+ R + +
Sbjct: 429 LVRLSGLEREKIEAEYQELQVLIDELKAILADEEKIVDIIRTEILELKERFNDTRRTEIT 488
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAMS 624
++D D+IP + ++ ++ GY+KR+ NT+ Q RG G+ V + N D +
Sbjct: 489 SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRG--GRGVQGMGTNEDDFVE 546
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ HD +L+F+ +G V+ A+ Y+IPE R A G P+V +L++ GE++T++I V+
Sbjct: 547 HLMNTSTHDTILFFTSKGKVFRAKGYEIPEFGRTAKGLPIVNLLNIEKGEKVTAMIRVAS 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D + + T G K+ ++ F++IRT G+IAI L D+L VR + V + ++
Sbjct: 607 FDDDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGEKQVIIGTR 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+GM++ D IRS+ R G ++L+DGD++ M+I+
Sbjct: 667 DGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEIV--------------------- 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGE 863
G +L V+E G+GKR +R VGL + + ++ + AV V DG
Sbjct: 706 EPGQEILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVAVKTV------DGS 759
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D ++L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 760 ED--LMLITINGMLIRMDVNDISLIGRSTQGVRLIRL 794
>gi|406904716|gb|EKD46403.1| hypothetical protein ACD_67C00246G0003 [uncultured bacterium]
Length = 820
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/838 (43%), Positives = 533/838 (63%), Gaps = 30/838 (3%)
Query: 76 VGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
V N+ PR + E+ + SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M + GL
Sbjct: 12 VPENIQPRQIVAEVQQ----SYLDYAMSVIIARALPDVRDGLKPVHRRILYSMWDSGLRP 67
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAA 195
F+K A VVGEVLGK+HPHGD AVYDS+VR+AQDFSLRYPL+ G GNFGS+D D AAA
Sbjct: 68 SAKFRKSATVVGEVLGKYHPHGDTAVYDSMVRLAQDFSLRYPLVWGQGNFGSMDGDSAAA 127
Query: 196 MRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
RYTE +L ++E ML DI++DTV+F+PNFD KEP +LPA+LP LLLNGA GIAVGM
Sbjct: 128 YRYTEAKLRPIAEEMLF-DIEKDTVDFIPNFDGVHKEPVVLPAKLPQLLLNGAMGIAVGM 186
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATN+PPHNL EL D + LI NPEA + +L+ ++ GPDFPTGG++ GI +AY TGRG
Sbjct: 187 ATNLPPHNLNELADAINHLIDNPEANVDDLMRFIKGPDFPTGGIMYNTPGIKEAYSTGRG 246
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
+I R K ++ +++KS ++I EI Y TNKS L+ KIA+LV+ + GI D+RDESD
Sbjct: 247 KIVTRAKADI--IETKSGNFHIVITEITYLTNKSNLIIKIADLVKEGKILGIKDLRDESD 304
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLD 434
+ G+RIVIELK+ A V+N LY +T LQ +F+ NM+ ++DG P+ + LK +L+ ++
Sbjct: 305 KDGVRIVIELKKDAYAQKVLNKLYNMTDLQKNFNVNMLALVDGIDPQILSLKSILEHYIV 364
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
R VV RR +F+L++ K+R HI+EG+ + LDN+D VI ++++P+ A A L +FKL
Sbjct: 365 HRNIVVTRRTQFELNKAKDRAHILEGLKIALDNIDAVIETIKKSPNKEEAHANLMRKFKL 424
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
S+ QA AIL+M L+ L LERKK DE + I +LE+LLSS+K IL +++ E+I LK
Sbjct: 425 SQLQASAILEMRLQTLAGLERKKIEDELLEKLALIAQLEDLLSSKKKILAVVKDELIALK 484
Query: 555 NRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
+F R + + + D+IPN+E ++ IS+ GY+KRM P+ + +Q RG G
Sbjct: 485 EKFGDERKTKVLKTGIEEFKQEDVIPNEEAIITISQDGYIKRMNPDVYKVQKRGGKGVIG 544
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
R D + AHD++++F++ G V+ +AY+IPE R + G +V L L+ E
Sbjct: 545 ATTREGDFIEKVTSVMAHDNLMFFTNTGKVFQTKAYEIPESARTSKGQAVVNFLQLAQDE 604
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
+IT++IP ++ G +F M T G +KK + F ++R +G+IAI L GD L WV+ T
Sbjct: 605 KITAMIPYNKTDGYKFFFMTTTLGVVKKTKIEDFDNVRRSGLIAITLDKGDTLNWVQPTT 664
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
D + ++++ G I +R++ R+ G ++LK+ DK+ MD++
Sbjct: 665 GTDEMIISTREGQAIRFKEADVRAMGRSAAGVRGIKLKNDDKVVGMDVV----------- 713
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
KG G LL ++E+G+GKR L S++ + + G G K +A+ +V
Sbjct: 714 -------AKGQKGNQLLIITENGYGKRTDLGSYK---IQKRGGSGIK-TAKITTKIGKLV 762
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
G ++ + D + + S G + RI + IS+ R +GV +M+ K+ +A++I
Sbjct: 763 GANIINVDDIDGDLFITSLQGQIIRIPLASISVLGRATQGVRIMKPSAGDKVAAAAII 820
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 115/276 (41%), Gaps = 45/276 (16%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ ++ ++ +GYIK+++ +++ + G+I GD ++ V D + +
Sbjct: 512 EEAIITISQDGYIKRMNPDVYKVQKRGGKGVIGATTREGDFIEKVTSVMAHDNLMFFTNT 571
Query: 746 GMVILSSCDIIRSLSRNTRGSVA---MRLKDGDKMASMDIIP------------AALHKD 790
G V + I +R ++G ++L +K+ +M IP
Sbjct: 572 GKVFQTKAYEIPESARTSKGQAVVNFLQLAQDEKITAM--IPYNKTDGYKFFFMTTTLGV 629
Query: 791 LERTPEDSHSNV-----------KGSSGPW---------LLFVSESGHGKRVPLSSFRKL 830
+++T + NV KG + W ++ + G R + R +
Sbjct: 630 VKKTKIEDFDNVRRSGLIAITLDKGDTLNWVQPTTGTDEMIISTREGQAIRFKEADVRAM 689
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
+ G+ G K +D+ VVG + G+ Q+++++++G R + IQ R
Sbjct: 690 GRSAAGVRGIKLKNDDK-----VVGMDVVAKGQKGNQLLIITENGYGKRTDLGSYKIQKR 744
Query: 891 YARGVILMRLELS-GKIQSASLISVTEPETDLFLPS 925
G+ ++ GK+ A++I+V + + DLF+ S
Sbjct: 745 GGSGIKTAKITTKIGKLVGANIINVDDIDGDLFITS 780
>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
Length = 841
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 541/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V I+ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFI-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|148378018|ref|YP_001252559.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
Length = 836
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/834 (43%), Positives = 541/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQ+FS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+K +I+ EIPYQ NK+ L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIEEEKGKNK---IIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V I+ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK + +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++ ED
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV-----------LEDE---- 705
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 706 ------ALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFI-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
Length = 840
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/818 (42%), Positives = 533/818 (65%), Gaps = 33/818 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ +++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM +LG+ KPFKK
Sbjct: 8 QIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++T++F+PN+D ++EP +LP+R P LL+NG SGIAVGMATNIPPH
Sbjct: 128 LSKIAMEML-RDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NPE + EL++Y+ GPDFPT I+G GI AY TGRG IT+R K
Sbjct: 187 NLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSITMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E ++K++ ++++E+PYQ NK+ LVEKIAELV K +DGI+D+RDESDR+GMR+V
Sbjct: 247 TTIEEHNNKAR---IVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+LY+ TALQS+F NM+ I++ +PK + LK+VL +L + VV R
Sbjct: 304 IELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVVRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ + LD++D VI ++R + S+ A L F LS +QA AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER+K DE L+++I + E+L++ + +L++I +E+ E++ R++ R
Sbjct: 424 LDMRLRRLTGLEREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD+ D+IP +E+++ I+ GY+KR+ T+ Q RG G + ND
Sbjct: 484 TEITIGEESILDE-DLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V +H ++++F+DRG Y +AY+IPE R A GTP++ ++ + GE + ++I V
Sbjct: 543 VEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIEV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F +++L T G +KK + + +IR G+IA+ L D L V+ ++ V M
Sbjct: 603 ERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNEEVIMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I +RS+ R G + L +GD + MD++
Sbjct: 663 TAQGMSIRFPESDVRSMGRAATGVKGITLDEGDSVIGMDVV------------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+ +G+GKR P+S +R G+ + ++ VVG + +D
Sbjct: 704 --VPGQDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKNGT----VVGLKVVKD- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+E +++++ SGT+ R + IS R +GV L+ +
Sbjct: 757 --EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINI 792
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 575 DIDIIPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHD 633
+++ +++ L +++G VK+ + N++ G I + LR +D + D + ++
Sbjct: 601 EVERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVN---LREDDTLIDVKLTDGNE 657
Query: 634 HVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVM 693
V+ + +G+ + R A G V+ ++L +G+ S+I + Q +++
Sbjct: 658 EVIMGTAQGMSIRFPESDVRSMGRAATG---VKGITLDEGD---SVIGMDVVVPGQDVLI 711
Query: 694 LTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMVIL 750
+T NGY K+ ++ + S GI I + + + ++ +++ + + + +G +I
Sbjct: 712 VTANGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIR 771
Query: 751 SSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
+S + I ++ RNT+G + +++ D +A++
Sbjct: 772 TSMEGISTMGRNTQGVKLINIREDDTVATV 801
>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
Length = 855
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/867 (43%), Positives = 544/867 (62%), Gaps = 66/867 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AMHEL S +P+KK AR
Sbjct: 9 LPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD A YD++VRMAQDFSLRY L+ G GNFGSID D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+S LLADID+DTV+F PN+D S+ EP ++P R+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KISHE-LLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+++ ++ NP ++ ELL ++PGPDFPT G+I GN GI + YRTGRGR+ +R +T
Sbjct: 188 TEVINACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVVMRARTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E D K KR +II E+PYQ NK L+EKIAELV +K L+GISD+RDESD+SGMR+VIE
Sbjct: 248 FEETD-KGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+LY+ T LQ SF NMV ++DGQPK + LK+VL AFL+ R V+ RR
Sbjct: 307 LKRGEIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREVITRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPS--------------NSTASAALK- 489
F+L + +ER HI+EG+ V L+N+D +I+I++ +PS +S S+ LK
Sbjct: 367 VFELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQ 426
Query: 490 -------------------DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+ +KLS+ QA IL M L+RLT LE+ K V+E K +M+ I
Sbjct: 427 GDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIA 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLEDADSGQLDDIDIIPNDEMLLAIS 589
L ++L+ + +I+ E+ E+K + R S ++E+A+ ++D+ I P D M++ +S
Sbjct: 487 DLIDILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDL-IAPQD-MVVTLS 544
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
GY+K + + Q RG GK + +D + V +HD++L FS RG VY +
Sbjct: 545 HTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYWLKV 604
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P+ +R + G P+V + L GE+I +I+ V EF ++++ M T G +KK L+ FS
Sbjct: 605 YEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFVDNEYIFMATAKGTVKKTPLSDFS 664
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAM 769
+ R +GIIAI+L GD L ++ + + S +G + +RS+ RN RG M
Sbjct: 665 NPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNARGVRGM 724
Query: 770 RLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRK 829
+L DG ++ S+ I E+ +V + +E+G+GKR LS FR+
Sbjct: 725 KLTDGGEVLSLLI------------AENEAQSV--------MVATENGYGKRTLLSEFRR 764
Query: 830 LPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQA 889
G+ + S DR VVG L G+ DE ++L++ G + R +V +I
Sbjct: 765 SGRGTQGVKAIQVS--DRNGQ--VVGAKLV--GDHDE-LMLITTGGVLIRTRVSEIRELG 817
Query: 890 RYARGVILMRLELSGKIQSASLISVTE 916
R +GV L+ L K++ ++ +E
Sbjct: 818 RATQGVTLINLSDDEKLRGLEKVAESE 844
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 12/222 (5%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
++E + + KG VK+ + F N + G I KL D + + + + ++ S
Sbjct: 642 DNEYIFMATAKGTVKKTPLSDFSNPRKSGIIAI---KLDNGDYLIGAGITKGENDIVLVS 698
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
+ G + RNA G V+ + L+DG + S++ A Q +++ T NGY
Sbjct: 699 NHGKAVWFGESDVRSMGRNARG---VRGMKLTDGGEVLSLLIAENEA--QSVMVATENGY 753
Query: 700 IKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMVILSSCDII 756
K+ L+ F S T G+ AIQ+ + ++ + + D + + + G++I + I
Sbjct: 754 GKRTLLSEFRRSGRGTQGVKAIQVSDRNGQVVGAKLVGDHDELMLITTGGVLIRTRVSEI 813
Query: 757 RSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
R L R T+G + L D +K+ ++ + + H D E DS
Sbjct: 814 RELGRATQGVTLINLSDDEKLRGLEKVAESEHHDEEDGDIDS 855
>gi|383320650|ref|YP_005381491.1| DNA gyrase subunit A [Methanocella conradii HZ254]
gi|379322020|gb|AFD00973.1| DNA gyrase subunit A [Methanocella conradii HZ254]
Length = 815
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/819 (44%), Positives = 540/819 (65%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EEM SYI Y+MSV++GRALPDVRDGLKPVHRR+L+ M+ELG + KP+KK
Sbjct: 9 KVIPVKIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTHDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVG+V+GK+HPHGD A+YD++VRM QDFSLRYPLI G GNFGSID D AAAMRYTE R
Sbjct: 69 ARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDGAAAMRYTEIR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +++ ML AD+D++TV+F+PNFDES KEP +LPA+LP LL+NG+SGIAVGMATNIPPH
Sbjct: 129 LARIADEML-ADLDKETVDFIPNFDESLKEPVVLPAKLPNLLINGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D A+I NPE + ELL Y+ GPDFPTG +I G GI +AY TGRG I +R
Sbjct: 188 NLAEVIDGTVAVIDNPEISPLELLNYVKGPDFPTGAIIYGREGIKEAYLTGRGAIKIRAV 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+ K +I+ E+PYQ NK+ L+E IA LV +K ++GISD+RDESDR GMRIV
Sbjct: 248 AEITQEGGKDV---IIVTELPYQVNKAKLIEDIANLVRDKKIEGISDLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A+ +++N LYR T ++ SF N + ++D QP + LK+ ++ ++ R VV R
Sbjct: 305 IELKKSANGRVILNQLYRHTQMEVSFGVNNLALVDNQPMTLSLKQAIEHYIRHRQDVVTR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R++F+L + + R HI+ G++V LDN+D + I+R++ S A A ++ LS++Q+ AI
Sbjct: 365 RSQFELKKAQAREHILAGLLVALDNIDDFVDILRKSASADDAKAIFMSKYGLSDEQSKAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LR LT LERKK DE ++ I L+E+L+S + +L +I++E++ELK ++ R
Sbjct: 425 LDMRLRGLTALERKKVEDERAEQLKLIDYLKEVLASPQKVLDIIKKELLELKEKYGDERR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + +++ G++ D D+IP + +++ IS GY+KR +T+ Q RG +G + + D
Sbjct: 485 TRIVESE-GEILDEDLIPRETVVVTISNTGYIKRQPLDTYRTQRRGGMGVMGMETKDEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D HD++L+F+++G VYS + Y+IP +R + G +V +L+L E IT++IP+
Sbjct: 544 VVDVFAASTHDNLLFFTNKGRVYSLKVYEIPVASRQSRGKAIVNLLTLLPSESITAMIPI 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF +L+M T G +KK L+ F +IR+TGI+AI+L GDEL V+ V +A
Sbjct: 604 KEFDDGHYLMMCTREGIVKKTPLSAFKNIRSTGIMAIKLDEGDELISVKMTNGGQEVLIA 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++G +RS+ R G + +RL + D++ M+++
Sbjct: 664 TRDGKANRFHESEVRSMGRQAAGVIGIRLAEKDRVVGMEVL------------------- 704
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L V E+G GKR P+S + G+I K + R V V S+ E
Sbjct: 705 --SEGASILTVCENGFGKRTPVSEYTPHHRGGQGMINIKTTL--RNGGVVAVA-SVTE-- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D+Q++LV++ G + RIKV+D+S R +GV ++ L+
Sbjct: 758 --DDQILLVTRDGIMMRIKVKDVSEIGRNTQGVKIITLK 794
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 42/242 (17%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDE---LKWVRCCTNDDLVAMASQ 744
+ +V ++ GYIK+ L+ + + R G+ + + DE + T+D+L+ ++
Sbjct: 503 ETVVVTISNTGYIKRQPLDTYRTQRRGGMGVMGMETKDEDFVVDVFAASTHDNLLFFTNK 562
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKD---GDKMASMDIIPAALHKDLERTPEDSHSN 801
+ L +I + SR +RG + L + + +M IP D
Sbjct: 563 GRVYSLKVYEIPVA-SRQSRGKAIVNLLTLLPSESITAM--IPIKEFDD----------- 608
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
G +L+ + G K+ PLS+F+ + G++ K D L +V +
Sbjct: 609 -----GHYLMMCTREGIVKKTPLSAFKNI--RSTGIMAIKLDEGDELISVKMTN------ 655
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI-------QSASLISV 914
++V++ ++ G NR ++ R A GVI +RL ++ + AS+++V
Sbjct: 656 --GGQEVLIATRDGKANRFHESEVRSMGRQAAGVIGIRLAEKDRVVGMEVLSEGASILTV 713
Query: 915 TE 916
E
Sbjct: 714 CE 715
>gi|348025660|ref|YP_004765464.1| DNA gyrase [Megasphaera elsdenii DSM 20460]
gi|341821713|emb|CCC72637.1| DNA gyrase [Megasphaera elsdenii DSM 20460]
Length = 824
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/840 (42%), Positives = 542/840 (64%), Gaps = 34/840 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK
Sbjct: 8 KIVPVCLESEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD+ VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DID++TV+F+PN+D S +EP++LP+++P LL+NG++GIAVGMATNIPPH
Sbjct: 128 MAKITGEML-EDIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D LI NPEA+L+E++ + GPDFPTG IMG GI+ AY TGRG I +R
Sbjct: 187 NLGEVIDGCVLLIDNPEASLEEIMTKIKGPDFPTGAKIMGRDGIIKAYSTGRGSIKMRSC 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ R +++ EIPYQ NK+ ++E IA+L NK +DGI+ +RDESDR GMRIV
Sbjct: 247 ATIEPMNKGKHR--IVVTEIPYQVNKARVIESIADLSRNKEIDGITALRDESDRKGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+ +P IV+N LY+ T LQ +F M+ ++DG P+ + LK++L +LD + V+ R
Sbjct: 305 VELRADVNPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLTLKQILNYYLDHQKDVITR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R++F+L + R HI+EG+++ LD++D VI+ +RE+ ++ A +L +F LSEKQA AI
Sbjct: 365 RSKFELDKALARAHILEGLLIALDHIDEVIKTIRESATDDAAKQSLMSKFNLSEKQALAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER+K +E L ++I L +L+ ++++++ E+++ K +F R
Sbjct: 425 LDMRLRRLTGLEREKIEEEYAELEKRIAYLRSVLADEHKVMEIVKTELLDAKKKFGDERR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ADS D+IPN+ M+L ++ +GY+KR+ N ++ QN+G G + DA
Sbjct: 485 TQIV-ADSSDFSIEDMIPNERMVLTLTRRGYMKRINANVYHTQNKGGRGIKGMGTKDEDA 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIP 681
++ + A + VL+F++ G VY +AY+IPE +RN+ G + IL LS+GE++ ++I
Sbjct: 544 VNHLLYTSAWNTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSNGEKVNALID 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ + L M+T G +KK L F ++R G+IAI L+ GD L VR D + +
Sbjct: 604 LDQVDPSMNLFMVTEKGLVKKTLLQEFKNVRRNGLIAISLMEGDHLAKVRLTNGDQTIIL 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++ GM I + + +R + RNTRG + L +GD + D+ L D +
Sbjct: 664 ATKLGMAICFNENDVRPMGRNTRGVRGITLAEGDMVIGADV----LEPDCQ--------- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L VSE G GKR + +++ G+ +K + + +VG + +
Sbjct: 711 --------VLTVSEEGFGKRNNIDAYKVQLRGGKGIKNFKITPK----TGDIVGVEVVHE 758
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
G ++++L++ +G V R + I I + R GV + +LE K+ + I++ + D
Sbjct: 759 G---QELMLITSNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTIAIEGNDED 815
>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
Length = 809
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/818 (43%), Positives = 536/818 (65%), Gaps = 32/818 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+KK
Sbjct: 7 KIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D DPAAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F PN+DES KEP++LPA+ P LL NG +GIAVGMATNIPPH
Sbjct: 127 MSKVAE-LMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D LI P+AT++EL+ + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 186 NMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E S R +I+ E+PYQ NK+ LVEKIAELV +K ++GI+ + DESDRSGMRIV
Sbjct: 246 VHIETTSSGRSR--IIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A+ ++++N LY+ T LQ SF M+ ++DG P+ + LKEVL ++ + V+ R
Sbjct: 304 IDVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A L ++FKLSEKQA AI
Sbjct: 364 RTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I L+ +L+ I ++I+ E++ ++ ++ R
Sbjct: 424 LDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ +++ D+I +++++ ++ Y+KRM +T+ Q RG +G + + D
Sbjct: 484 TEIT-IDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTGMGTKEADF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H +L+F++RG VY +AY+I E +R A GT ++ +L L E+IT++I V
Sbjct: 543 VENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEEKITAVIQV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF +++L M T G +KK SL+ F SIR G+ AI L D+L V+ + V +
Sbjct: 603 KEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTDGEKHVILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM + + D +RS+ R RG + LK GD + MD +L R E
Sbjct: 663 TAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVVVGMD--------NLARNAE------ 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L ++ G+GKR S +R GLI K + ++ A V+G + G
Sbjct: 709 -------VLTITAEGYGKRTATSEYRLQTRGGKGLINMKVT--EKTGA--VIGLKVVRPG 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
++++L++ G V R KV +IS+ +R +GV ++RL
Sbjct: 758 ---QELILITTDGIVIRTKVDEISVISRNTQGVKVVRL 792
>gi|346314836|ref|ZP_08856353.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 2_2_44A]
gi|345905774|gb|EGX75511.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 2_2_44A]
Length = 837
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/825 (43%), Positives = 534/825 (64%), Gaps = 46/825 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V++ +EM S++ YSMSV++ RALPDVRDG+KPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI++DTV+F+PN+D + EP++LPAR P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAMEMM-KDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NL E +D A++ NPE ++ EL++ Y+ GPDFPTGG+I+G GI A+ TGRG I VR
Sbjct: 186 NLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMVRS 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K +E + + R +++ EIPYQ NK+ L+ KIA+LV K ++GI+ + DES+R G+RI
Sbjct: 246 KHHLEDMGNGKTR--IVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ A P +++N LYR+T LQ+SF NM+ +++ PKQMG++E LQ +++ + V
Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F+L + ++R HI+EG+ + LD++D +IR++R + +++ A L ++FKL+E QA+A
Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIRLIRSSQNDAEARTGLMEQFKLTEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + LM I L ++L++ +L +I E+ E+KNRF R
Sbjct: 424 ILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRFGDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + +AD + D D+IP +++++ ++ GY+KRM +T+ QNRG G+ V + VN
Sbjct: 484 RTEISEADY-DMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRG--GRGVKGMSVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + I HD+++ F++ G VY + YK+P R A G P+V +L+L E++ ++
Sbjct: 541 DDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNLDKEEKVRAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PV + FL+ +T NG +K+ ++ F SIR G IAI L DEL V+ T DD +
Sbjct: 601 VPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D IR++ R G + DG ++ AA K+
Sbjct: 661 IIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV-DGSI-----VVGAATSKE--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVFVVG 855
G LL VSE+G+GKR + +R L G G K + L +V V
Sbjct: 706 -------GTHLLAVSENGYGKRTAIEEYR---LTTRGAKGVKTINVTNKTGELVSVRAVN 755
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
DE ++V+ SG + RI V DI I +R +GV L+ +
Sbjct: 756 --------GDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINV 792
>gi|334135609|ref|ZP_08509092.1| DNA gyrase, A subunit [Paenibacillus sp. HGF7]
gi|333606804|gb|EGL18135.1| DNA gyrase, A subunit [Paenibacillus sp. HGF7]
Length = 841
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/853 (41%), Positives = 551/853 (64%), Gaps = 34/853 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++V V++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+ S KP KK
Sbjct: 8 QVVEVDISSEMRTSFLDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMYSDKPHKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+ VY+++VRMAQDFSLRY LI GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSPVYETMVRMAQDFSLRYMLIDGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML DI+++T++++PN+D ++EP +LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 LSKIAMEML-RDINKETIDYIPNYDGEEQEPVVLPARFPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + +I NP+ T EL++ + GPDFPTG I+G GI AY TGRG +T+R K
Sbjct: 187 NLGEVIDGIQQMIENPDVTPLELMQSIKGPDFPTGAYILGREGIRQAYATGRGSVTMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E +++K++ +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 ADIEEVNNKAR---IIVHEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P++V+N+LY+ TALQS+F M+ +++G+P+ + L+E++ +L+ + ++ R
Sbjct: 304 MELRRDVNPNVVLNNLYKHTALQSNFGIIMLALVNGEPRVLNLREMIYYYLEHQKVIIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + + R HI+EG+ + LDNLD VI ++R + + A L F LS QA AI
Sbjct: 364 RTEYDLRKAEARAHILEGLRIALDNLDEVIALIRSSRTTEAAREGLMTTFNLSHDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E L+++I +L+ +L+ + IL +I E+ E+K + R
Sbjct: 424 LDMRLQRLTGLEREKIEQEYAELLQRIAELKAILADEQLILAIISDELNEIKQSYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + + ++D D+IP +++++ I+ GY+KR+ NT+ Q RG G + +D
Sbjct: 484 SEITKGEDS-IEDEDLIPQEDVVITITHTGYIKRLPVNTYRSQKRGGRGIVGMDTKTDDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
++ V H ++L+F+DRG VY +AY+IP+ +R A GTP++ ++ + GE ++++IPV
Sbjct: 543 VNHLFVTNTHHYLLFFTDRGKVYKLKAYEIPDLSRTARGTPIINLIQIEQGETVSAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ D +L T G +KK L+ + +IR G+IAI L D L V+ + M
Sbjct: 603 QEFSADNYLFFATKRGIVKKTPLDDYINIRKGGLIAINLRDDDSLIGVKLTDGKRHIIMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++GM I D +RS+ R+ G +++ D + MD++ ED+
Sbjct: 663 TRDGMSIRFPEDDVRSMGRSATGVKGIQIGSEDTVIDMDVV-----------DEDA---- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G GKR P++ +R G+ + ++ VVG + +
Sbjct: 708 ------SVLIVTSKGFGKRTPIAEYRVQSRGGKGIKTLNVTTKNGA----VVGLKVVNN- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP-ETDL 921
+E +++++ SGT+ R + IS R +GV L+ + ++ + + ++ +E + D
Sbjct: 757 --EEDLMIITASGTLIRTSISGISEMGRNTQGVRLINIREDDEVATVTHVAKSEESQDDE 814
Query: 922 FLPSTSDKLATES 934
F +++A+E
Sbjct: 815 FNEEDQEQIASEQ 827
>gi|284047397|ref|YP_003397736.1| DNA gyrase subunit A [Acidaminococcus fermentans DSM 20731]
gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
Length = 831
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/867 (42%), Positives = 558/867 (64%), Gaps = 49/867 (5%)
Query: 64 DEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRR 123
D+++N +++ + +++PV + +EM YI Y+MSV++ RALPDVRDGLKPVHRR
Sbjct: 2 DDQQNDKQTIS------AGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRR 55
Query: 124 ILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHG 183
IL+AM+E G+ K +KK AR+VG+VLGK+HPHGD++VYD++VR+AQDFS RY ++ GHG
Sbjct: 56 ILYAMNEAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHG 115
Query: 184 NFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243
NFGS+D DPAAAMRYTE R+ ++ ML DI++DTV+F+PN+DES KEP++LPA++P L
Sbjct: 116 NFGSVDGDPAAAMRYTEVRMGKIAVEML-RDIEKDTVDFIPNYDESLKEPTVLPAKVPAL 174
Query: 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGN 303
L+NG++GIAVGMATNIPPHNLGE+VD LI +P+AT+++L+ + GPDFPTG I+G
Sbjct: 175 LINGSAGIAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGL 234
Query: 304 LGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKT 363
GI AY TGRG + VR KT VE + R +++ EIPYQ NK+ L+E IA LV++KT
Sbjct: 235 SGIRQAYTTGRGVVKVRAKTHVEPMPKNKNR--IVVTEIPYQVNKAKLIENIAHLVQDKT 292
Query: 364 LDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQM 423
L+GI+D+RDESDR GMRIVIEL+ P I++N LY+ T LQ SF M+ +++G P+ +
Sbjct: 293 LEGITDLRDESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRIL 352
Query: 424 GLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483
LK++L+ +LD + V+ R+ R++L + KER HI+EG+ + LD+LD VI +R + +
Sbjct: 353 NLKQILEYYLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEV 412
Query: 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNIL 543
A AAL ++F LS++QA AILDM L+RLT LER+K DE K +M I LE++LS I+
Sbjct: 413 AKAALMEKFGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIM 472
Query: 544 QLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFN 603
+ ++++++K RF R + + D+G L+ D+I +++++ IS + Y+KR F
Sbjct: 473 GIAREDLLDVKKRFGDARRTSIV-PDTGDLETEDLIAEEDVVITISHQSYIKRQALTNFR 531
Query: 604 LQNRGTIGKSVGKLRV----NDAMSDF----IVCRAHDHVLYFSDRGIVYSARAYKIPEC 655
QNRG G G ++ N DF ++ HD++L+F++RG VY + ++IPE
Sbjct: 532 NQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEA 591
Query: 656 TRNAAGTPLVQILSLSDGERITSIIPV-SEFAGDQ--FLVMLTMNGYIKKVSLNLFSSIR 712
+R A GT + +L L + E++ ++I V S + D+ FL M T GY+K+ S++ F S R
Sbjct: 592 SRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSAR 651
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+IAI L G+EL V+ + + + +A+++G I D +R + R + G + L+
Sbjct: 652 KGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPMGRTSHGVRGISLR 711
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
D + SMD ++ T E +L V++ G GKR +S +R
Sbjct: 712 PHDSVVSMDSC-------VDDTGE-------------VLTVTDKGQGKRTDISEYRVQTR 751
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
G+I K + DR +VG + ++L+S +G + R+ DIS R A
Sbjct: 752 GGKGIINLKVT--DRTG--LIVGSKFINETHD---IMLISAAGIIIRMNAADISTYGRNA 804
Query: 893 RGVILMRLELSGKIQSASLI-SVTEPE 918
+GV LM LE K+ + +++ +V+E E
Sbjct: 805 QGVKLMDLEAGDKVAALAIVNTVSEDE 831
>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
Length = 825
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/819 (44%), Positives = 524/819 (63%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R++PV + EEM SY+ Y+MSV++GRA+PDVRDGLKPVHRR L+AM E+G KPFKK
Sbjct: 14 RVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNYHDKPFKKS 73
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+++YD+LV+MAQ FS RY L+ G GNFGSID D AAAMRYTE R
Sbjct: 74 ARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAAAMRYTEAR 133
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ +SE+ LL DID++TV+F PNFDES +EP +LPA++P LL+NG+ GIAVGMAT +PPH
Sbjct: 134 LDPVSES-LLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGMATKMPPH 192
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+GE+ +CA+I +PE + L+EYMPGPDFPTGG+I+G GI AY TGRGRI +RG
Sbjct: 193 NIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASAYTTGRGRIRMRGV 252
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + SK+ +II EIPYQ NK+ L+E+IA+LV +K +DGISDIRDESD+ G+R+V
Sbjct: 253 AEIEDHEG-SKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESDKDGIRVV 311
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ P +V+N LY+ T L+S+F + I+D QPK + LKE++Q FL R SV+ R
Sbjct: 312 IELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQEFLKHRKSVIYR 371
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + ++R HI+ G+++ LDN+D VI +R + + AS L + F L E QADAI
Sbjct: 372 RTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIENFGLDEIQADAI 431
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L M LRRL LE++K +DE L++++ +L+ ++S +I I++E +E+ ++S R
Sbjct: 432 LKMQLRRLAALEQQKIIDERDGLLKEVERLKLIISDEGHIFAEIKKETLEISEKYSDERR 491
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D LD D+I N ++L++++ Y+K M +T+ Q+RG G + D
Sbjct: 492 TKIS-HDVSDLDKEDLIENKQVLVSLTSHNYIKSMPLDTYKGQHRGGRGIIGMSTKDEDF 550
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V HD++L F+ G VY + Y IPE TR + G +V +L L D E++T++IPV
Sbjct: 551 VKSVFVASTHDYLLCFTSSGRVYWLKVYDIPEATRQSRGKAIVNLLELGDEEKVTAVIPV 610
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
SEF D+F + T+NG + K+ FS R +GI AI L GDEL V + + +
Sbjct: 611 SEFKEDEFFLFATLNGMVVKIPQVEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILT 670
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + I RN G ++L+ D++ D+ P E H
Sbjct: 671 TRMGQSLRFGIESISLRHRNALGVKGIKLRYMDEL--QDVTPV----------EKDH--- 715
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL ++E G+GKR FR +G+ + + + V
Sbjct: 716 -------LLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTDVSGGIVSSKAVS------- 761
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DE ++L+S+SG V R KV +ISIQ R RGV +M+L+
Sbjct: 762 -DDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLD 799
>gi|386712350|ref|YP_006178672.1| DNA gyrase subunit A [Halobacillus halophilus DSM 2266]
gi|384071905|emb|CCG43395.1| DNA gyrase subunit A [Halobacillus halophilus DSM 2266]
Length = 844
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/820 (42%), Positives = 548/820 (66%), Gaps = 32/820 (3%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
PR+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ S K KK
Sbjct: 8 PRVQEINISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMHDLGMHSDKAHKK 67
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVYD++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 68 SARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEA 127
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S +L DI++DT+++ N+D ++KEP +LPA+ P LL+NG SGIAVGMATNIPP
Sbjct: 128 RMSKIS-MEILRDINKDTIDYDDNYDGTEKEPLVLPAKFPNLLVNGGSGIAVGMATNIPP 186
Query: 262 HNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
H LGE++D + A+ +P+ T+Q+L+E ++ GPDFPT G I+G GI AY TG+G ITVR
Sbjct: 187 HQLGEVIDAVLAVSKDPDITIQDLMENHIYGPDFPTSGKILGLSGIRKAYETGKGSITVR 246
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
E+E + + + +I+ E+PYQ NK+ LVEKIA+L +K +DGI+D+RDESDR+G+R
Sbjct: 247 ANVEIE--EQANGKARLIVTELPYQVNKARLVEKIADLARDKKIDGITDLRDESDRNGLR 304
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R A+P++++N+LY++TALQS+F NM+ ++ G PK + LK+ L+ +L+ + V+
Sbjct: 305 VVIELRRDANPNVLLNNLYKMTALQSTFGINMLALVKGHPKVLNLKQCLEYYLEHQKEVI 364
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR ++L + + R HI+EG+ V LD+LD VI ++RE+ + A + L + ++LS++QA
Sbjct: 365 KRRTAYELRKAEARAHILEGLRVALDHLDEVITLIRESQTTEIAKSGLMERYELSDRQAQ 424
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + LM+ I +L+ +L+ + +L++I +E+ ++K RF+
Sbjct: 425 AILDMRLQRLTGLEREKIENEYQDLMKLIAELKAILADEEKVLEIIREELEDVKERFNDE 484
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + S ++D D+IP + +++ ++ +GYVKR+ NT+ Q RG G
Sbjct: 485 RRTEILLGGSDFIEDEDLIPEETVIVTLTHQGYVKRLPANTYRSQRRGGRGVQGMGTHEE 544
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H+ +L+FS++G VY A+ Y++PE +R A G P++ +L++ E I ++I
Sbjct: 545 DFVEHLLSTSTHNTLLFFSNKGKVYKAKGYEVPEFSRTAKGIPIINMLNIERDEWINAVI 604
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V +F D +L+ T NG K+ +L+ F++IR G+IA+ L DEL V+ +
Sbjct: 605 TVEDFVDDWYLLFTTRNGITKRTTLSQFANIRRGGLIALGLREDDELISVKLTDGQKDIM 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NG +I + D IR++ R G + L+D D++ SM+I L DL+
Sbjct: 665 IGTKNGYLIRFNEDQIRAMGRTAAGVKGISLRDDDRVVSMEI----LEDDLQ-------- 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+ G+GKR P + +R G+I + ++ +VV + A
Sbjct: 713 ---------VLTVTSKGYGKRTPATDYRITNRGGKGIITCNLTEKNG----YVVA-TQAV 758
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+GE D ++++++SG + R+ + IS R +GV L+RL
Sbjct: 759 NGEED--IMIITESGVLIRMPLESISETGRNTQGVRLIRL 796
>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
gi|386038698|ref|YP_005957652.1| DNA gyrase subunit A [Paenibacillus polymyxa M1]
gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
gi|343094736|emb|CCC82945.1| DNA gyrase subunit A [Paenibacillus polymyxa M1]
Length = 854
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/819 (43%), Positives = 537/819 (65%), Gaps = 35/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+KK
Sbjct: 8 QIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML D++++TV+F+PN+D + EP +LPAR P LL+NG GIAVGMATNIPPH
Sbjct: 128 LSKIAMEML-RDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NP+ T EL++Y+ GPDFPT G I+G GI AY+TGRG +T+R K
Sbjct: 187 NLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + +K++ +I+ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDESDR+GMRIV
Sbjct: 247 TTIEEIGNKAR---IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+L++ TA+QS+F NM+ I++ +PK + LK+VL +L + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ + LD+LD VI ++R + + A L + F L+ +QA AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I++ E+L++ +L +I +E+ ELK RF+ R
Sbjct: 424 LDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFADDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD+ D+IP +++++ ++ GY+KR+ T+ Q RG G + D
Sbjct: 484 TEITVGEESILDE-DLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +H H+L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++IP+
Sbjct: 543 VEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L T +G IKK L+ +++IR G+IAI L D L V+ + +
Sbjct: 603 EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I +RS+ R+ G + L + D + MDI+ + DL+
Sbjct: 663 TAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIV----NTDLD---------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+L V+ G+GKR P +R + G G K + D+ VVG +
Sbjct: 709 -------ILIVTAKGYGKRTPAVDYR---IQSRGGKGIKTINVTDKNGP--VVGLKVV-- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++E +++++ SGT+ R + +IS R +GV L+ +
Sbjct: 755 -KAEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINI 792
>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 874
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/838 (43%), Positives = 548/838 (65%), Gaps = 24/838 (2%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ E++ +Y+ YSMSV++ RALPD+RDGLKP RRI++AMHEL L+ F+KCA
Sbjct: 7 IIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHFRKCA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
++ G+ G +HPHG+ VY +LVR+AQ + +RYPLI G GNFGSID DP AAMRYTE RL
Sbjct: 67 KIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYTEARL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++ ML ++++DTV F N+DE+++EP++ PAR P LL+NG+SGIAVGMATN+PPHN
Sbjct: 127 QKITMEML-TELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+GE+ D + ALI NP+ +LLEY+ GPDFPTGG I+G GI + + TGRG+I +RG+T
Sbjct: 186 IGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIMRGET 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E L + ++ +II+ IPYQ + S L+E++ ELV++K ++GISDIRDES R GMRIVI
Sbjct: 246 EIETLPNDIEQ--IIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIVI 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
++KR D +V N LY+ T LQS+F + ++DG P+ + +KE+LQ F+DFR VV RR
Sbjct: 304 QVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGVPQVVNMKEMLQNFIDFRHEVVLRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L KER HI+EG+ + LDNLD VI ++R + + + AS L+++F LSE QA AIL
Sbjct: 364 TQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFGLSEIQAKAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER K E + L+ I +L EL+ ++ + LI++E E++++F+ RL+
Sbjct: 424 DMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEIRDKFADKRLT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ A +G + D+I ++ +++ I+ GYVKR+ +T+ +Q RG G S L+ D +
Sbjct: 484 TIIPAPAGSFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQARGGKGLSASNLKEEDFI 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V H ++L F+D G+ Y + ++IPE +R A G +V ++ L++G+RI + + +
Sbjct: 544 QYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVNLVKLAEGDRIKAFVTLK 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F +Q +VM T NG +KK L FS R+ GI AI+L GDEL R C D + +A+
Sbjct: 604 DFHPEQNIVMCTRNGLVKKTPLTAFSHPRSIGIKAIKLREGDELIDARICEAGDDILLAT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+G S IRS+ R ++G +RL++GD + SM I T +D N K
Sbjct: 664 HDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIA----------TAQDQLENGK 713
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDG 862
+S +L +SE G+GKR P+SS+ +G+I K + + LAA+ +V
Sbjct: 714 PNSST-ILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLV-------- 764
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
D+ +++++Q G + R +V +IS+ R GV L+ L + ++ SL+ +EP+ +
Sbjct: 765 RDDDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLVH-SEPDEE 821
>gi|73749403|ref|YP_308642.1| DNA gyrase subunit A [Dehalococcoides sp. CBDB1]
gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
gi|452204311|ref|YP_007484444.1| DNA gyrase subunit A [Dehalococcoides mccartyi DCMB5]
gi|452205844|ref|YP_007485973.1| DNA gyrase subunit A [Dehalococcoides mccartyi BTF08]
gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
gi|452111370|gb|AGG07102.1| DNA gyrase subunit A [Dehalococcoides mccartyi DCMB5]
gi|452112900|gb|AGG08631.1| DNA gyrase subunit A [Dehalococcoides mccartyi BTF08]
Length = 809
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/824 (44%), Positives = 533/824 (64%), Gaps = 41/824 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + +EM GSY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM++LG+ P+KK AR+
Sbjct: 8 PINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ FS RYPL+ G GNFGS+D DPAAAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQ 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E LLADID++TV+F+PNFD S +EP++LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 IAE-HLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLA 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL +C LI NP+ + EL++++ GPDFPTGG I+G GI AY TG+G+I ++ K +
Sbjct: 187 ELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+++ R + + EIPYQ NK+ LV KIAELV+ + + GISD+RDESDR GMR+VIEL
Sbjct: 247 GEVET---RKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIEL 303
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR A+P V+NSLY+ T +++SF NM+ ++DGQP+ + LKEVL+ F+DFR ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L K+R HI+EG+ LD +DR+I I+R + + A L EF S QA AILD+
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAEFDFSVVQAQAILDL 423
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K +DE LM++I LE+LLS + I L++++ +LK+ + PR + +
Sbjct: 424 QLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQPRATEI 483
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ + D++P+ ++++ +SE+G++KR+ N F LQ+RG G R DA+
Sbjct: 484 SNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRF 543
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
V HD +L+F++RG V+S R + IP + +R A GT +V ++ ++ ERIT+I+ +
Sbjct: 544 LSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILDLKS 603
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D FL+M T G IKK SL F+++R++G+IA+ L DEL + + +A++
Sbjct: 604 FPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAVETIEEKDILLATR 663
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +R+ R + G A+ L D++ SMD+
Sbjct: 664 LGQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDV---------------------A 702
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAEDGE 863
G ++ V+E+G GK + + + G+I +K + A VV +
Sbjct: 703 QEGTMVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSVT------ 756
Query: 864 SDEQVVLVSQSGTVNRIKVRD------ISIQARYARGVILMRLE 901
+Q++L+S G V R +V++ I I R +GV +MRLE
Sbjct: 757 --DQMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLE 798
>gi|402835169|ref|ZP_10883749.1| DNA gyrase, A subunit [Selenomonas sp. CM52]
gi|402276052|gb|EJU25179.1| DNA gyrase, A subunit [Selenomonas sp. CM52]
Length = 809
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/838 (43%), Positives = 543/838 (64%), Gaps = 35/838 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KP+KK
Sbjct: 7 KIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS+RY L GHGNFGS+D DPAAAMRYTE R
Sbjct: 67 ARIVGEVLGKYHPHGDTSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++E ++L DID++TV+F PN+DES KEP++LPA+ P LL NG +GIAVGMATNIPPH
Sbjct: 127 MSKVAE-LMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLTNGTAGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D LI P+AT++EL+ + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 186 NMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E S R +I+ E+PYQ NK+ LVEKIAELV +K ++GI+ + DESDRSGMRIV
Sbjct: 246 VHIETTSSGRSR--IIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A+ ++++N LY+ T LQ SF M+ ++DG P+ + LKEVL ++ + V+ R
Sbjct: 304 IDVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A L + FKLSEKQA AI
Sbjct: 364 RTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEGFKLSEKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K +E + +++ I L+ +L+ I ++I+ E++ ++ ++ R
Sbjct: 424 LDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ +++ D+I +++++ ++ Y+KRM +T+ Q RG +G + + D
Sbjct: 484 TEIT-IDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTGMGTKEADF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +V H +L+F++RG VY +AY+I E +R A GT ++ +L L E+IT++I V
Sbjct: 543 VENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEEKITAVIQV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF +++L M T G +KK SL+ F SIR G+ AI L D+L V+ + V +
Sbjct: 603 KEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTDGEKHVILG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM + + D +RS+ R RG + LK GD + MD +L R E
Sbjct: 663 TAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVVVGMD--------NLARNAE------ 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L ++ G+GKR S +R GLI K + ++ A V+G + G
Sbjct: 709 -------VLTITAEGYGKRTATSEYRLQTRGGKGLINMKVT--EKTGA--VIGLKVVRPG 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++++L++ G V R KV +IS+ +R +GV ++RL G+ A+ +V E + +
Sbjct: 758 ---QELILITTDGIVIRTKVDEISVISRNTQGVKVVRL---GEGDKAASFAVMEQKNN 809
>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
Length = 816
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/845 (42%), Positives = 545/845 (64%), Gaps = 39/845 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV + E ++ SY+ YSMSV++GRALPDVRDGLKPVHRRIL+AMH++G+++ +KK
Sbjct: 2 QVIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKS 61
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+AVY++LVRMAQ FS+R PLI G GNFGSID D AAAMRYTE R
Sbjct: 62 ARIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEAR 121
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E LL DID+DTV+F+PN+D +++EP +LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 122 LTKIAEE-LLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPH 180
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL+D L +I N +ATL+++L+++ GPDFPTGG I G GI++AY+TGRG I +R K
Sbjct: 181 NLEELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAK 240
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E K + ++I E+P+Q NK+ L+EKI++LV++K ++GIS++RDESDR G+R+V
Sbjct: 241 HHIE---HKGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVV 297
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A I++N+LY+ T +Q SF NM+GI D QPK L E+L F+ R +VV R
Sbjct: 298 IELKKDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIR 357
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + K+R HI+EG+++ L N+D V+ I++++ A L + F+L++ QA AI
Sbjct: 358 RTIYELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAI 417
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LE +K +E K LME+I L +L + +I+ E++E+K ++ TPRL
Sbjct: 418 LDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRL 477
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E+ D +D D+IPN+EM++ I+ +GYVKR+ + QNRG GK + +D
Sbjct: 478 TNIEE-DYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDF 536
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ DF V +HD ++ +DRG ++ + Y+IPE +R + G +V +++L E+I +II
Sbjct: 537 IEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTIIKT 596
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT-NDDLVAM 741
+F + L T NG +K+ +L+ F +IR+TG+ AI + GDEL + D + +
Sbjct: 597 EDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDELVTAKIVEPGDKELFI 656
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHS 800
++ GM I D +R + R RG +R K +GD +++ A +D
Sbjct: 657 VTKKGMAIRFPVDTVREMGRTARGVTGIRFKIEGD-----EVVGALALQD---------- 701
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSL 858
+L +SE G GKR + +R G+I K + + D + V
Sbjct: 702 -----ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLTNKTGDLVGVVAT----- 751
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASLISVTEP 917
E D +++++ SG + R+ + IS + +GV +++L+ K+ S A S E
Sbjct: 752 ----EKDHDLMVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEE 807
Query: 918 ETDLF 922
E LF
Sbjct: 808 EGTLF 812
>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
Length = 839
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/842 (43%), Positives = 522/842 (61%), Gaps = 40/842 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
P P++ PV + EEM SYI Y+MSV++GRA+PDVRDGLKPVHRR LFAM E+G + K
Sbjct: 9 PLFVPKVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDK 68
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P+KK ARVVG+V+GK+HPHGD ++YD++V+MAQ FS R L+ G GNFGS+D D AAMR
Sbjct: 69 PYKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMR 128
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL+ +E LL D++++TV FVPNFDES +EPS+LPA+LP LL+NG+ GIAVG+AT
Sbjct: 129 YTEVRLKREAEE-LLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIAT 187
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
+PPHNLGE+ D +C + +P+ T+ EL++ MPGPDFPTGG+IMG GI +AY +G+G++
Sbjct: 188 KMPPHNLGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAYLSGQGKL 247
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG E+ D KR +II EIPYQ NK+ L+E IAELV+ K ++GISD+RDESD+
Sbjct: 248 TVRGVAEI---DESGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKD 304
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVI+L++ A P +++N LY+ TAL+S+F I+D QPK +GL +++ F+ R
Sbjct: 305 GMRIVIDLRKDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQFVRHRI 364
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
+V+ RR+ F + +ER HI+ G++ +DN+D VI +R A + A AL +F L E
Sbjct: 365 TVITRRSEFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAKFSLDEA 424
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AIL M LRRL LE++K +DE + L +I KL ELLSS NI I +E+ EL+ ++
Sbjct: 425 QAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSEDNIRAEISRELQELREKY 484
Query: 558 STPRLSMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
+ R + + +G L +I D+IPN ++L+ ++ + YVK M + + +Q RG G
Sbjct: 485 ADKRRTQI----TGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDAYRVQGRGGRGVMG 540
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
++ D + V HDH+L F+ G Y R + IPE +R + G +V +L L E
Sbjct: 541 ISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKGKAIVNLLDLRSEE 600
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
R+T++IPV EF+ D+F + LT G I K+ + FS R+TG+ AI L GD L V
Sbjct: 601 RVTAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRSTGVNAISLREGDNLVHVMVSD 660
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+ + ++ G + + I RN G + MR+KD D + SM +I H
Sbjct: 661 GSQEIIITTKYGQSLRFHEEQIPLRHRNALGVIGMRMKDDDIVTSMTVIEEGKH------ 714
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
LL ++ SG+GKR +R +G+ K D + F
Sbjct: 715 ---------------LLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLKRNDGIVTAFSA 759
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G +E+++L+S G V R V I+IQ R +GV +MRL ++ + +S
Sbjct: 760 G--------PEEEIILMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSP 811
Query: 915 TE 916
E
Sbjct: 812 EE 813
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
+D L ++E+G + ++ + F+ + R T G + LR D + +V ++ +
Sbjct: 613 SDRFFLFLTERGMIIKIPQDEFS-RPRST-GVNAISLREGDNLVHVMVSDGSQEIIITTK 670
Query: 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYI 700
G +IP RNA G V + + D + +TS+ + E + L+ +T +GY
Sbjct: 671 YGQSLRFHEEQIPLRHRNALG---VIGMRMKDDDIVTSMTVIEE---GKHLLTITSSGYG 724
Query: 701 KKVSLNLF--SSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS 758
K+ + + + T G+ I+L D + ++ + + S G+VI +S + I
Sbjct: 725 KRTNFDEYRGHGRGTMGVRNIKLKRNDGIVTAFSAGPEEEIILMSAEGIVIRTSVEKITI 784
Query: 759 LSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
R+T+G MRL GD++ + + KD+
Sbjct: 785 QGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDI 817
>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
Length = 833
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/834 (43%), Positives = 535/834 (64%), Gaps = 29/834 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + EM SY+ Y+MSV++GRALPD+RDGLKPVHRR+LFAMHELG KP+KK AR
Sbjct: 8 VSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD+AVYD++VRMAQ FS+R PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 68 VVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYTEVRMA 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
LS LLADI+++TV+F PN+D+S EP +LP + P LL+NG+ GIAVGMAT IPPHNL
Sbjct: 128 KLSHE-LLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE+++ L ++I +P T ++L++ +PGPDFPT G I+G+ + +AYRTGRG I +R K
Sbjct: 187 GEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMRAKAM 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE+ D ++ R ++I EIPYQ NK+ L+EKIA L++ K ++GISD+RDESDR GMRIVI+
Sbjct: 247 VEI-DRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRIVID 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A +V+N LY++TA+QSSF M+ I+ GQPK + L+EVL F+D R +V RR
Sbjct: 306 LKREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVTRRC 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F+L + + R HI+EG+ + L+NLD +I+I++ + ++ A A L + F S+ QA AILD
Sbjct: 366 VFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIERFTFSDIQAQAILD 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L RLT LER K ++E ++ QI +L+E+L S IL++I E+IE+K + PR +
Sbjct: 426 MRLHRLTGLERDKIINEYNEVLAQIARLKEILGSEVEILKIIRAELIEVKENYDDPRRTE 485
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ A + L D+I ++M++ +S GY+KR + + Q RG GK+ + + D +
Sbjct: 486 I-IAKTKDLSIEDLIVEEDMVVTVSHSGYIKRNAVSLYRSQRRGGKGKTGMRPKEEDFVE 544
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ H ++L F+D+G VY + ++IP+ R A G +V +L L+ ER+ +I+PV E
Sbjct: 545 KLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAARGKAIVNLLQLAPEERVMTILPVKE 604
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D++++ T NG +KK L +++ R GII++ + GD L R V +AS
Sbjct: 605 FVEDKYIIAATKNGVVKKTELMAYANPRQGGIISMTIDEGDSLVATRITDGSMDVLLASH 664
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+G I + +R + R RG M+L+ D + M++ V
Sbjct: 665 HGKSIRFAETDVRPMGRTARGVRGMQLEGDDTIIGMEV-------------------VND 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
++ L+ V+E+G+GKR LS +R + G+I K S DR +VV L D
Sbjct: 706 NTSASLVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTS--DRNG--YVVDIKLVTD--- 758
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+E ++ ++ G + R +V +SI R +GV LM LE +I + + ++ E E
Sbjct: 759 EEDLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKEEE 812
>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
Length = 853
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/831 (43%), Positives = 545/831 (65%), Gaps = 29/831 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V + + +E+ SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G++ KPFKK AR
Sbjct: 40 VNIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTHDKPFKKSAR 99
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VGEVLGK+HPHGD++VY+++VR+AQDF++RY L+ GHGNFGS+D D AAAMRYTE R+
Sbjct: 100 IVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMRYTEARMA 159
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ A LLADID++T++F NFDES EP++LPA+LP LLLNG++GIAVGMATNIPPHNL
Sbjct: 160 KIT-AELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGIAVGMATNIPPHNL 218
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+ D + ALI N E ++ EL+ Y+ GPDFPTGG+I G GI +AYRTGRG+I V GK +
Sbjct: 219 SEICDGIVALIDNREISVDELINYIKGPDFPTGGIINGKQGIYEAYRTGRGKIKVAGKVK 278
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E SK+ + +I+ E+PYQ NK+ L+EKIAELV +K L GISD+RDESDR G+RIVIE
Sbjct: 279 IET--SKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRDESDREGIRIVIE 336
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+G + +++NSLY+ T LQ++F M+ +++ P+ + LK++L+ +L+ R +V+ RR
Sbjct: 337 LKKGEESELILNSLYKFTDLQNTFGIIMLALVNNAPRVLNLKQILENYLEHRYNVITRRV 396
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
+F+L++ + R HI+EG + LDN+D VIRI+R + + A L F SE QA AILD
Sbjct: 397 QFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLIASFGFSEIQAKAILD 456
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LER K E + LM I +L +L+ ++I+ EVI+LK F R +
Sbjct: 457 MRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEVIKLKEDFGDKRRTE 516
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+++A ++ D+I ++++++ ++EKGYVKR +T++ Q RG IG + +D +
Sbjct: 517 IKEA-RVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYHSQRRGGIGVNATNTVEDDVIK 575
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
D + + D +L F+ +G V+S + Y+IPE + A G + ++ LS+ ER++++I V E
Sbjct: 576 DMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVRE 635
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW--VRCCTNDDLVAMA 742
F D+ + +T +G +KK L LF++I TGI A+ L DELK+ + + D + +A
Sbjct: 636 FEKDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRDEDELKFAGLTSGSEKDEIFIA 695
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NG+ I + +R + R G + L+D D + + II PE
Sbjct: 696 TRNGISIRFCEEDVRVMGRTAAGVKGITLRDKDYVVAAVII----------NPE------ 739
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S ++ ++E G+GKR LS ++ G+I K + + +V + +D
Sbjct: 740 KISEELSVMTITEEGYGKRTALSEYKVQSRGGKGIINLKINEK----TGKIVDVKIVDD- 794
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++L++ GT+ R KV +S+ R GV +M++ K+ SA I+
Sbjct: 795 --KTEIMLITSEGTLIRTKVDTVSVIGRATSGVRIMKVRNEEKVASAVKIA 843
>gi|345862365|ref|ZP_08814590.1| DNA gyrase, A subunit [Desulfosporosinus sp. OT]
gi|344324550|gb|EGW36103.1| DNA gyrase, A subunit [Desulfosporosinus sp. OT]
Length = 827
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/842 (42%), Positives = 546/842 (64%), Gaps = 37/842 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PVE+ +EM S+I YSMSV++ RALPDVRDGLKPVHRRIL+ +HE+GL+ KP+ K
Sbjct: 9 KVLPVEIADEMRKSFIEYSMSVIISRALPDVRDGLKPVHRRILYTLHEMGLTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +G+FHPHGD+++YD++VRM QD++ RYPLI GHGNFGSID D AAAMRYTE R
Sbjct: 69 ARLVGDCMGQFHPHGDSSIYDAVVRMEQDWASRYPLIDGHGNFGSIDGDSAAAMRYTELR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID+DTV+F PN+DE Q EP++LPA+ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MAKIASYML-ADIDKDTVDFTPNYDEKQDEPTVLPAKFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ AL+ NPE ++ EL+ Y+ GPDFPTGG IMG GI AY TGRG I R K
Sbjct: 188 NLNEVIEATIALLDNPELSIDELMNYVKGPDFPTGGTIMGYEGIRSAYTTGRGSIKTRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ K+ + +++ EIP+ NK+ +VEKIAELV +K LDGI+D+RDESDRSGMRIV
Sbjct: 248 AYIEPME-KTGKNRIVVTEIPFMVNKARMVEKIAELVRDKRLDGITDLRDESDRSGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P +++N LY+ T L+ +F NM+ +++GQP+ + LK+++ F++ + +V+ R
Sbjct: 307 IELRRDVNPQVILNQLYKHTQLEDTFGVNMLALVNGQPRTLTLKDMIHYFIEHQKNVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + HI+EG+ + LD++D VI +R + +TA L F LSEKQA AI
Sbjct: 367 RTQFELNKAEAEAHIIEGLRIALDHIDEVIETIRSSADEATARENLTIRFGLSEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ + LM I L+ +L+S ++ +I+ E+ E+ ++F R
Sbjct: 427 VDMRLKRLTGLEREKLENQYQELMNTIAYLKAVLASESMVIGIIKTELTEINHKFGDERR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + D ++D D+I +++++ ++ GY+KR+ NT+ QNRG GK V +
Sbjct: 487 TRIT-VDVSKMDIEDLIAVEDVVVTVTHYGYIKRLPLNTYKSQNRG--GKGVHGMATKEL 543
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + H H+L+F+ +G VY +A++IPE +R GT ++ +L+LS E IT+++
Sbjct: 544 DFVEHLFTTTTHHHILFFTSQGKVYRLKAHEIPEASRIGKGTAVINLLNLSQHEMITAVM 603
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
+ E++ D FL+ T G +KK +L + S R G+IA+ L GDEL V+ D +
Sbjct: 604 AIKEYSSDYFLITATKKGIMKKTALKEYDSSRRDGLIALTLDEGDELIGVKLTQGLDDIL 663
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+A++NG+ I + +R + R RG + L + D + MD+I
Sbjct: 664 LATRNGIAIRFAESDVRYMGRTARGVKGITLDENDVVVGMDVI----------------- 706
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
G G LL +SE+G KR L+ FR G+I K + + L + VV
Sbjct: 707 ---GDEGE-LLTMSENGFAKRTYLNEFRVQGRGGKGIIVMKLNEKTGSLVGIKVV----- 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+ ++++++++ +G + RI+V IS Q R A+GV+ MR S + A ++ E
Sbjct: 758 ---QVEDELMVITNNGIMLRIQVSSISNQGRSAQGVLAMRTGTSTVVAMAKVLMKDEEGI 814
Query: 920 DL 921
D+
Sbjct: 815 DV 816
>gi|345302554|ref|YP_004824456.1| DNA gyrase subunit A [Rhodothermus marinus SG0.5JP17-172]
gi|345111787|gb|AEN72619.1| DNA gyrase, A subunit [Rhodothermus marinus SG0.5JP17-172]
Length = 853
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/874 (42%), Positives = 538/874 (61%), Gaps = 68/874 (7%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PRI+PV + EEM SYI YSMSV++GRALPDVRDGLKPVHRR+L+ M+ELGL++ P+K
Sbjct: 5 KPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD AVYD++VRMAQDF++RYPL+ G GNFGSID D AAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL L+E M L DID+DTV+F NFD S KEP +LPA LP L++NGA GIAVGMAT IP
Sbjct: 125 ARLTRLAEEM-LRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE VD L A+I NP+ +L ELL+++P PDFPTGG+I G G+ +AY TGRGRI +R
Sbjct: 184 PHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVREAYATGRGRILIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E + + RM ++I EIPYQ NKS L+EKIA LV + +DGI+DIRDESDR G+R
Sbjct: 244 ARIHEE--EIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+V+EL++ A P ++ N LY+ T Q +F NMV +++G+P+ + LKE+++ +LD R VV
Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKD---------- 490
RR RF+L + +ER HI+EG+ + LD+LD VI I+R + A L +
Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421
Query: 491 -------------EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
F L+E QA+AIL + L RLT LER+K +E + L+++I +L +L+
Sbjct: 422 QRERLGLPVEQTSHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILA 481
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
S Q+I +E++ELK +++ R + ++ A G D+I ++++++ +S +G +KR
Sbjct: 482 SEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLIKRT 541
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+ + Q RG +G +R +D + C+ HD++L+F+D G Y R Y IPE +R
Sbjct: 542 PAHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPEGSR 601
Query: 658 NAAGTPLVQILSLSDGERITSIIPVS-------EFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+ G + ++ ++ +R+ +++ + EF +++M T G +KK L FS
Sbjct: 602 TSLGRSIRNLIQIAPDDRVRTVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEAFSR 661
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIAI GDEL V +AS G V+ +R + RNTRG +
Sbjct: 662 PRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDEADVRPMGRNTRGVRGIA 721
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+ G+++ M + PE S P +L +S +G+GKR PL +
Sbjct: 722 LEPGEQVVGMVAV----------APEAS---------PCILSISANGYGKRTPLDEY--- 759
Query: 831 PLNRVGLIG---YKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
P+ R G G K + RL A+ V + + +++++Q+G + RI V DIS
Sbjct: 760 PVQRRGGKGVWTMKITPRTGRLIAIKAV--------QDTDDLMIITQNGLMIRIHVADIS 811
Query: 887 IQARYARGVILMRLELSGKIQSASLISVTEPETD 920
R+ +GV L++L+ I + + VTE + D
Sbjct: 812 RMGRHTQGVRLIQLKPGDAIADVTRL-VTEAQED 844
>gi|374321363|ref|YP_005074492.1| DNA gyrase subunit A [Paenibacillus terrae HPL-003]
gi|357200372|gb|AET58269.1| DNA gyrase subunit A [Paenibacillus terrae HPL-003]
Length = 858
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/819 (42%), Positives = 532/819 (64%), Gaps = 35/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRILFAM ELG+S KP+KK
Sbjct: 8 QIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML D++++TV+F+PN+D + EP +LPAR P LL+NG GIAVGMATNIPPH
Sbjct: 128 LSKIAMEML-RDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NP+ T EL++Y+ GPDFPT G I+G GI AY+TGRG +T+R K
Sbjct: 187 NLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + +K++ +I+ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDESDR+GMR+V
Sbjct: 247 TTIEEIGNKAR---IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P++V+N+L++ TA+QS+F NM+ I++ +PK + LK+VL +L + V+ R
Sbjct: 304 MELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ LD+LD VI ++R + + A L + F LS +QA AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRTALDHLDEVIALIRSSQTAEAAREGLIERFSLSPEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I + E+L++ +L +I +E+ EL+ RF+ R
Sbjct: 424 LDMRLQRLTGLEREKIENEYNELLQKIAEYREILANEHLVLNIISEELNELRGRFTDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD+ D+IP +++++ ++ GY+KR+ T+ Q RG G + D
Sbjct: 484 TEITVGEESILDE-DLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +H H+L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++IP+
Sbjct: 543 VEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L T G IKK L+ +++IR G+IAI L D L V+ + +
Sbjct: 603 EEFVEDSYLFFATQQGIIKKTPLDNYANIRKGGLIAINLREDDALIEVKLTDGQQEMIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I +RS+ R+ G + L D + MDI+ +L
Sbjct: 663 TAQGMSIRFPEGDVRSMGRSATGVKGITLDKSDAVIGMDIVDTSLD-------------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+L V+ G+GKR P+ +R + G G K + D+ VVG +
Sbjct: 709 -------ILIVTAKGYGKRTPVVDYR---VQSRGGKGIKTINVTDKNGP--VVGLKVV-- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++E +++++ SGT+ R + +IS R +GV L+ +
Sbjct: 755 -KTEEDLMIITASGTLIRTSMEEISTMGRNTQGVRLINI 792
>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
Length = 824
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/838 (42%), Positives = 539/838 (64%), Gaps = 39/838 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
PV + EM +Y++Y+MSV++ RALPD RDGLKPV RRIL+ M ++G S +P+KK AR+
Sbjct: 8 PVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+VLGK HPHGD+AVYD+L RMAQ +S+RYPLI G GNFGSID DP AAMRYTE RL
Sbjct: 68 VGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARLAP 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E LL++ID+DTV+F NFD S +EP +LPA LP LLLNGASGIAVGMATNIPPHNLG
Sbjct: 128 IAEE-LLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNLG 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL D + LI +PEAT++EL+E +PGPDFPT GLI+G GIL AY TGRG+IT+R KT +
Sbjct: 187 ELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ +++ E+PYQ NK+ L E+IAELV+++ ++GI D+RDESDR+GMR+VI L
Sbjct: 247 E--EAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILL 304
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERR 443
K+ A P V+N+LY+ T +Q++F NM+ +++ QP+ + LK +LQ +++ R V+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L++ +ER HI+EG+ + LDNLD VI+ +R++ + +A L F L+E+QA AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRNFSLTERQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
++ LRRL LER+K +E + +++ I +LE++L++ + +L LI++++ LK ++ PR +
Sbjct: 425 ELQLRRLAALERQKIEEEYREVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDPRRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ +G++ D D+IP+ +++ ++++GY+KR P+ + Q RG G R D +
Sbjct: 485 RIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIV 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ C + D++L+F+DRG VY +A+++P+ +R A G PLV ++SL GE++TS++ V
Sbjct: 545 RHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQVTSMLAVR 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF ++LVM T+ G IK+ L +S +R+ G+IAI L GD L WVR + + + +
Sbjct: 605 EFDA-EYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G + +R + R G + + L +GD++ SMD+
Sbjct: 664 ARGQTLRFEQSEVRPMGRPATGVIGINLAEGDRVVSMDL--------------------- 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDG 862
G LL V+ G GKR LS + G+I K E D +AA VV
Sbjct: 703 AEEGADLLVVTARGIGKRTALSEYPLKGRATGGVITIKLRNETDEVAAAAVV-------- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+ ++ G V R +IS R +GV ++ + ++ + +SV +P+ +
Sbjct: 755 REHSLLTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDRVAA---LSVEDPDEN 809
>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
Length = 880
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/858 (42%), Positives = 552/858 (64%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +++ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEA--DKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ +++ F R + + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEI----TAAIHDIDMEELIAR 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P+ +R A G P+V IL L + ERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L D D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TAAGVRGMKLADDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L+ + G++ K S + VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELAEYPTKGRATQGVVSIKVSERNG----SVVGAVQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
Length = 854
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/819 (42%), Positives = 535/819 (65%), Gaps = 35/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+KK
Sbjct: 8 QIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ ML D++++TV+F+PN+D + EP +LPAR P LL+NG GIAVGMATNIPPH
Sbjct: 128 LSKIAMEML-RDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + ALI NP+ T EL++Y+ GPDFPT G I+G GI AY+TGRG +T+R K
Sbjct: 187 NLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + +K++ +I+ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDESDR+GMR+V
Sbjct: 247 TTIEEIGNKAR---IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+L++ TA+QS+F NM+ I++ +PK + LK+VL +L + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ + LD+LD VI ++R + + A L + F L+ +Q+ AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQSQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I + E+L++ +L +I +E+ ELK RF+ R
Sbjct: 424 LDMRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISEELNELKERFADDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD+ D+IP +++++ ++ GY+KR+ T+ Q RG G + D
Sbjct: 484 TEITVGEESILDE-DLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +H H+L+F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++IP+
Sbjct: 543 VEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPI 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D +L T +G IKK L+ +++IR G+IAI L D L V+ + +
Sbjct: 603 EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I +RS+ R+ G + L + D + MDI+ +L
Sbjct: 663 TAQGMSIRFPESDVRSMGRSATGVKGINLDESDAVIGMDIVDTSLD-------------- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+L V+ G+GKR P+ +R + G G K + D+ VVG +
Sbjct: 709 -------ILIVTAKGYGKRTPVVDYR---IQSRGGKGIKTINVTDKNGP--VVGLKVV-- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++E +++++ SGT+ R + +IS R +GV L+ +
Sbjct: 755 -KTEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINI 792
>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
gi|373123465|ref|ZP_09537311.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 21_3]
gi|422325720|ref|ZP_16406748.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 6_1_45]
gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
gi|371660798|gb|EHO26042.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 21_3]
gi|371667468|gb|EHO32593.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 6_1_45]
Length = 837
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/825 (43%), Positives = 533/825 (64%), Gaps = 46/825 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V++ +EM S++ YSMSV++ RALPDVRDG+KPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI++DTV+F+PN+D + EP++LPAR P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAMEMM-KDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NL E +D A++ NPE ++ EL++ Y+ GPDFPTGG+I+G GI A+ TGRG I VR
Sbjct: 186 NLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMVRS 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K +E + + R +++ EIPYQ NK+ L+ KIA+LV K ++GI+ + DES+R G+RI
Sbjct: 246 KHHLEDMGNGKTR--IVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ A P +++N LYR+T LQ+SF NM+ +++ PKQMG++E LQ +++ + V
Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F+L + ++R HI+EG+ + LD++D +I ++R + +++ A L ++FKL+E QA+A
Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + LM I L ++L++ +L +I E+ E+KNRF R
Sbjct: 424 ILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRFGDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + +AD + D D+IP +++++ ++ GY+KRM +T+ QNRG G+ V + VN
Sbjct: 484 RTEISEADY-DMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRG--GRGVKGMSVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + I HD+++ F++ G VY + YK+P R A G P+V +L+L E++ ++
Sbjct: 541 DDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNLDKEEKVRAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PV + FL+ +T NG +K+ ++ F SIR G IAI L DEL V+ T DD +
Sbjct: 601 VPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D IR++ R G + DG ++ AA K+
Sbjct: 661 IIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV-DGSI-----VVGAATSKE--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVFVVG 855
G LL VSE+G+GKR + +R L G G K + L +V V
Sbjct: 706 -------GTHLLAVSENGYGKRTAIEEYR---LTTRGAKGVKTINVTNKTGELVSVRAVN 755
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
DE ++V+ SG + RI V DI I +R +GV L+ +
Sbjct: 756 --------GDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINV 792
>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
Length = 843
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/819 (42%), Positives = 531/819 (64%), Gaps = 35/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI++DT+++ N+D S+ EP +LPAR P LL+NG SGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + AL NP T EL+EY+PGPDFPTG I+G GI AY TG+G IT+R K
Sbjct: 187 NLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSITIRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K + +I+ EIPYQ NK+ L+EKIAELV +K LDGI+D+RDESDR+GMRIV
Sbjct: 247 AEIEDNNGKPR---IIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + ++++N+LY+ TALQSSF NM+ ++DG+PK + +KEVL +L+ + V+ R
Sbjct: 304 IELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD++D +I ++R + + A L + F LS QA AI
Sbjct: 364 RTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMENFSLSHDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+E+I +L+ +L+ + +L +I +E+ ++++R++ R
Sbjct: 424 LDMRLQRLTGLERDKIEAEYQELVEKIKELKAILADDEKVLAIIREELTDIRDRYNDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+++ + ++D D+IP +++ +S GY+KR+ +T+ Q RG G +D
Sbjct: 484 TIITFGED-SMEDEDLIPRQNVVITLSHNGYIKRIPLSTYRSQKRGGRGVQGMGTHDDDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +HDH+L+F+++G VY + Y+IP R A G P++ +L + E ++++IPV
Sbjct: 543 VQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSFNRTAKGIPIINLLQIEKDEYVSTVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF +++L +T +G K+ +L +FS+IR G+ AI L GD L VR +
Sbjct: 603 DEFDEERYLFFMTKDGIAKRTALKVFSNIRRGGLFAINLREGDALHGVRLTDGTKEIIAG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + +R + R G + L++ D++ MD I ED
Sbjct: 663 TRKGMSIRFHENDVRLMGRTATGVKGVTLQENDQVVGMDTI-----------EEDQ---- 707
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAED 861
+L V+E G GKR P+S +R G+ + ++ L ++ VV
Sbjct: 708 ------AVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKNGPLISLKVVS------ 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D +++++ SG + R+ V +IS R +GV L+R+
Sbjct: 756 --DDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRV 792
>gi|419719380|ref|ZP_14246663.1| DNA gyrase, A subunit [Lachnoanaerobaculum saburreum F0468]
gi|383304493|gb|EIC95895.1| DNA gyrase, A subunit [Lachnoanaerobaculum saburreum F0468]
Length = 824
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/848 (42%), Positives = 543/848 (64%), Gaps = 41/848 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV + ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQD+S+RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL ++ ML ADI++DTV+F PNFDE++KEP++LPAR P LL+NG +GIAVGMAT
Sbjct: 123 YTEARLSKIAMEML-ADINKDTVDFAPNFDETEKEPTVLPARFPNLLVNGTTGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
NIPPHN+ E++D + LI N + T+ E++ + GPDFPTG I+G GI +AY TG
Sbjct: 182 NIPPHNIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTG 241
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR TE+E + + R +++ E+PY NK+ L+EKIAELV++K +DGI+D+RDE
Sbjct: 242 RGKIKVRAVTEIESMSNGKSR--IVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDE 299
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S+R GMR+VIEL++ + +I++N LY+ T LQ +F NM+ ++D QPK + + ++L+ +L
Sbjct: 300 SNREGMRVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLKYYL 359
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR +++L++ KER HI+EG+++ LDN+D +I+I+R + + + A L F
Sbjct: 360 AHQEDVVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFG 419
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
LS+ QA AI+D+ LR LT LER++ E L+ +I E +L+ K +L LI++E++ +
Sbjct: 420 LSDAQAQAIVDIRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVV 479
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
++++ R + D + D+I +++++A+++ GY+KRM P+ FN+QNRG GK
Sbjct: 480 EDKYKDDRRTGFMQDDDMED--EDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRG--GKG 535
Query: 614 VGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
+ ++ +D + D ++ H+ + +F+++G VY+ + YKIPE +R A G +V +L L
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRIARGVAIVNLLQLQ 595
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+I++IIP + D +L M+T NG IKK +NLF +IR G+ AI L DEL V+
Sbjct: 596 PDEKISAIIPSEARSRDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVK 655
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
DD + + S+ GM I + IR++ R G MRL GD++ M +
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNKGDEVIGMQL--------- 706
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
S G +LL VSE G+GKR +S F+ G+I YK D
Sbjct: 707 ------------ASQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK----DNEKTG 750
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+VG L + D +++L++ G + RI+V ISI R A GV LM ++ + AS+
Sbjct: 751 KLVGAKLVNE---DREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASI 807
Query: 912 ISVTEPET 919
+ E +
Sbjct: 808 AKIREEKN 815
>gi|402814458|ref|ZP_10864052.1| DNA gyrase subunit A [Paenibacillus alvei DSM 29]
gi|402508305|gb|EJW18826.1| DNA gyrase subunit A [Paenibacillus alvei DSM 29]
Length = 837
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/831 (42%), Positives = 540/831 (64%), Gaps = 35/831 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
P+I ++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM +LG++ KP+K
Sbjct: 6 QPQIRDRDIGTEMRESFLDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMAPDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL ++ LL DI+++T++F PN+D ++EP +LPAR P LL+NG SGIAVGMATNIP
Sbjct: 126 ARLSKIA-MELLRDINKETIDFAPNYDGEEQEPVVLPARFPNLLVNGVSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D L ALI NPE T +L+EY+ GPDFPT GLI+G GI AY TGRG +T+R
Sbjct: 185 PHNLTEVIDGLQALIKNPELTPMDLMEYIKGPDFPTSGLIIGREGIRQAYATGRGSVTMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ +E + K++ +++ E+PYQ K+ LVEKIAELV K +DGI+D+RDESDR+GMR
Sbjct: 245 ARATIEDNNGKAR---IVVHELPYQVIKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R +P++V+N+LY+ TA+QS+F NM+ +++ +P+ + L+E+L +L+ + V+
Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLALVNQEPRVLNLREMLHYYLEHQIEVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + + R HI+EG+ + LD++D +I ++R + ++ A L F LS QA
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIALIRGSKNDEKAREGLITRFGLSFDQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM LRRLT LER+K E L+ +I + E+L++ + +L +I E+ E+K ++
Sbjct: 422 AILDMRLRRLTGLEREKIKAEYNELLLKIAEYREILANEQLVLTIINDELEEVKQKYGDE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + LD+ D+IP +++++ IS GY+KR+ T+ Q RG G + N
Sbjct: 482 RRTEITIGEDSILDE-DLIPQEDVIITISHSGYIKRLPVTTYRSQKRGGRGVVGMDTKDN 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + V +H ++++F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I+++I
Sbjct: 541 DFVEHLFVSNSHHYLMFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGETISAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF D++L T G +KK L+ + +IR G+IAI L D L VR + +
Sbjct: 601 PVVEFESDKYLFFATQQGIVKKTPLDDYVNIRKGGLIAINLRDDDALIGVRLTDGEQEII 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M ++ GM I S + +RS+ R+ G + L D++ MD++ +KD +
Sbjct: 661 MGTKMGMSIRFSENDVRSMGRSATGVKGITLDSDDQVIDMDVV----NKDND-------- 708
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
+L V+ G+GKR P+ +R + G G K + D+ A VVG +
Sbjct: 709 ---------VLIVTAKGYGKRTPMEDYR---IQSRGGKGIKTINVTDKNGA--VVGLKVV 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+D +E +++++ SGT+ R + IS RY +GV L+ + + + S
Sbjct: 755 QD---EEDLMIITASGTIIRTSMSGISQMGRYTQGVKLINIRDDDSVSTVS 802
>gi|257065526|ref|YP_003151782.1| DNA gyrase subunit A [Anaerococcus prevotii DSM 20548]
gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
Length = 814
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/837 (43%), Positives = 541/837 (64%), Gaps = 35/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+L ++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 7 IINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+A+YD+LVR+AQDFS RYPL +G GNFGSID D AAAMRYTE R+
Sbjct: 67 RVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTEVRM 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI++DTV+F+PNFDE + EP +LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 127 SKIAKEML-RDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMAPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D A + +PE ++++L + +PGPDFPTG I+G GI DAY TGRG++ +R
Sbjct: 186 LGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLRAVC 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E K R ++I EIPYQ NKS L+EKIA+LV++K +DGISDIRDESDR GMRIVI
Sbjct: 246 KIEPF--KKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIVI 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR ++ +IV+N+LY+ T L+++F + ++DG PK + LKE+++ +++ + VV RR
Sbjct: 304 EIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F LS+ K R+HIVEG+++ +DN+D +IRI+R + N ++F L++KQ+ AIL
Sbjct: 364 TSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFGLTDKQSQAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE K E+K L E I L +L+S +N+L LI E+ E+K +FS R S
Sbjct: 424 DMQLKRLSGLEIDKLNAENKELEETIAYLLSILNSEENLLNLIIDEMEEIKEKFSDDRRS 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G++D ++I +++LL +++ GY+KR+ +T+ +QNRG G + G + D +
Sbjct: 484 KII-PDEGEIDIEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFI 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
H+ +L+F+ G VYS + Y++PE +R + G ++ IL L GE+IT ++ +S
Sbjct: 543 KKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLESGEKITEMMTLS 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E D +V+ T G IKK F++IR GIIAI L D L VR ++ + +++
Sbjct: 603 ELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISVRQIDKEEELIIST 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+NGM I + +RS+ R +G A++L D++ SM N+K
Sbjct: 663 KNGMTIQFNSADLRSMGRIAQGVRAIKLDKDDEVVSM--------------------NIK 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDG 862
G +LL V+E+ +GK+ ++F+ G+ +K + + ++ V
Sbjct: 703 GDE-TYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKIIDTLPVDL------ 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPE 918
D +++VS SG + R+ VRDISI R GV L L + + +I S + S E E
Sbjct: 756 --DNDIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTKYSTLEEE 810
>gi|373457142|ref|ZP_09548909.1| DNA gyrase, A subunit [Caldithrix abyssi DSM 13497]
gi|371718806|gb|EHO40577.1| DNA gyrase, A subunit [Caldithrix abyssi DSM 13497]
Length = 814
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/842 (43%), Positives = 535/842 (63%), Gaps = 42/842 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+ + +EM SY+ YSMSV++ RALPDVRDGLKPVHRR+LF MHELGL K FKK
Sbjct: 6 KIIPILIEDEMRESYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQHNKAFKKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD AVYD+LVRM QDFSLRYPLI G GNFGSID D AAMRYTE R
Sbjct: 66 ARIVGEVLGKYHPHGDMAVYDTLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ ++E LL DI+++TV+FV NFDE+ +EP +LPARLP LL+NGASGIAVGMATNIPPH
Sbjct: 126 LQRIAEE-LLTDINKNTVDFVRNFDETLEEPVVLPARLPNLLINGASGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+V + A+I NPE + E+++Y+ GPDFPTGG+I G GI AY TG G+I VRGK
Sbjct: 185 NLGEVVAAIKAVIDNPEIEITEIMQYLKGPDFPTGGIIYGIEGIRQAYETGHGKILVRGK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + + R +IIKEIPYQ NK L+ KI L++ + L+GISD+RDESDR GMRIV
Sbjct: 245 VEIE--EMRGGREAIIIKEIPYQVNKLNLINKIVSLIKERKLEGISDMRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ +P +++N LY+ T LQ++F NM+ ++ G+PK + LKE++Q F+D R V+ R
Sbjct: 303 IEVKKDFNPHVIINFLYKHTQLQTTFGINMLALVQGRPKVLNLKEMIQHFIDHRIEVIVR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + + R HI+EG+ + +DN+D +I +++ + + A L F L+E QA AI
Sbjct: 363 RTQYDLDEAERRAHILEGLRIAIDNIDEIIELIKSSANPDIAREKLIQRFGLTEIQAKAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR- 561
LDM L+RLT LER+K +E + L++ I +L +L+S+ ++I++E+ +L +++ R
Sbjct: 423 LDMRLQRLTGLEREKIENEYRELLKLIDELRSILASKAKQYEIIKEELDDLVKKYNDERR 482
Query: 562 ---LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+S +ED D+I +++++ IS G+VKR+ N + QNRG G + +
Sbjct: 483 TEIVSSVEDVSIE-----DLILEEDVVITISHMGFVKRISLNEYRTQNRGGKGITGAVTK 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD++L F+DRG Y + Y IP +R + G P++ ++ + GE+I +
Sbjct: 538 DEDFVEHLFIANTHDYILIFTDRGKCYWLKVYAIPAGSRISKGRPIINLIDIESGEKIKA 597
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
++PV EF + F++M T G IKK +L+ FS R +GIIA+ + DEL + D
Sbjct: 598 VLPVKEFDDEHFILMATRKGLIKKTNLSAFSRPRKSGIIALNIREDDELIEAKLSDGDRK 657
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V + +G I +R + R G A+RL++GD++ +M + +
Sbjct: 658 VLYVTAHGKAIHFHESQVRPMGRGATGVRAIRLREGDRVIAMVVANGEMD---------- 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL +SE G+GKR P+ FR+ G+IG K + + G +
Sbjct: 708 -----------LLTISELGYGKRTPIKEFRQQSRGGSGIIGMKVTEK--------TGQLV 748
Query: 859 AEDGESDEQ-VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
G D Q +V+++ G +NR +IS R +GV L+RL ++ + +SV +
Sbjct: 749 GALGVYDNQDIVIITVKGIINRQNTINISRYGRSTQGVRLIRLTEGDRVSDVAKVSVEDE 808
Query: 918 ET 919
ET
Sbjct: 809 ET 810
>gi|402311445|ref|ZP_10830388.1| DNA gyrase, A subunit [Lachnospiraceae bacterium ICM7]
gi|400372300|gb|EJP25245.1| DNA gyrase, A subunit [Lachnospiraceae bacterium ICM7]
Length = 807
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/829 (42%), Positives = 538/829 (64%), Gaps = 43/829 (5%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M SYI Y+MSV+ RALPD+RDGLKPV RR+LF+M EL KP +KCAR+VG+ +GK
Sbjct: 1 MEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIVGDTMGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD+++Y SLV MAQD+S+RYPL+ GHGNFGS+D D AAAMRYTE RL ++ ML
Sbjct: 61 YHPHGDSSIYGSLVNMAQDWSMRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKIAMEML- 119
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
ADI++DTV+F PNFDE++KEP++LP+R P LL+NG +GIAVGMATNIPPHNL E+++ +
Sbjct: 120 ADINKDTVDFAPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNLSEVINAVV 179
Query: 273 ALIHNP----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
+I N E+T+ E+L+ + GPDFPTG I+G GI +AY TGRG+I VR +E+E +
Sbjct: 180 RIIDNKIEEKESTIDEMLDIIKGPDFPTGAHILGLRGIREAYTTGRGKIKVRAVSEIEAM 239
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ R +I+ E+PY NK+ L+EKIAELV++K +DGI+D+RDES+R GMR+VIEL+R
Sbjct: 240 PNGKNR--IIVTELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMRVVIELRRD 297
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
+ +++N LY+ T LQ +F NM+ +++ QPK + + ++L+ +L + VV RR ++ L
Sbjct: 298 VNAGVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAHQEDVVTRRTKYDL 357
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
++ KER HI+EG+++ LDN+D +I+I+R + + S A L F LS+ QA AI+DM LR
Sbjct: 358 NKAKERAHILEGLLIALDNIDEIIKIIRGSANVSIAKEELIKRFGLSDVQAQAIVDMRLR 417
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLED 567
LT LER++ E L+ +I E +L+ K +L +I +E++ +++++ R + ++D
Sbjct: 418 ALTGLERERLESEYNELLAKISYFEGILADEKKLLGVIREEILTVEDKYKDDRRTGFIQD 477
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV--NDAMSD 625
D ++D D+I +++++A+++ GY+KRM P+ FN+QNRG GK + ++ +D + D
Sbjct: 478 DD---MEDEDLIQREDIIIAMTKLGYIKRMSPDNFNVQNRG--GKGIKGMQTIDDDFIED 532
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
++ H+ + +F+++G VY+ + YKIPE +R A G +V +L+L E+I++IIP
Sbjct: 533 IVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGVAIVNLLNLQPDEKISAIIPSEAK 592
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
+ D +L M+T G IKK +NLF +IR G+ AI L DEL V+ DD + + S++
Sbjct: 593 SKDGYLFMVTKKGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVKVTHGDDDLIIVSKD 652
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
GM I + IR++ R G MRL D++ M + S
Sbjct: 653 GMCIRINDKDIRAMGRGATGVRGMRLNKDDEVIGMQL---------------------AS 691
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
G +LL VSE G+GKR +S F+ G+I YK D +VG L + D
Sbjct: 692 QGEYLLLVSEYGYGKRTRISEFKVQNRGGKGIICYK----DNEKTGKLVGAKLVNE---D 744
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
+++L++ G + RI+V IS+ R A GV LM ++ + AS+ V
Sbjct: 745 RELLLITTEGIIIRIEVSGISVLGRAASGVKLMNIDRESDTKIASIAKV 793
>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 809
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/836 (42%), Positives = 539/836 (64%), Gaps = 33/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSRIALEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N ATL ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + R +I+ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 TTIE--QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + +ER HI+EG+ LD++D +I I+R + + + A L F+ +E QA AI
Sbjct: 364 RTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +R + R+ +G M L+DGD + M+
Sbjct: 663 SSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + D+ +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGK--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
D+++++ S G R++V + +Q R +GV LMR++ +G I+ +S+ + E
Sbjct: 757 --DDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRID-TGNIKVSSIARIKAEE 809
>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
Length = 831
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/834 (42%), Positives = 539/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + R +++ EIPYQ NKS L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIE---EEKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V I+ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLG----------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 704 ----DEALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|384460466|ref|YP_005673061.1| DNA gyrase subunit A [Clostridium botulinum F str. 230613]
gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
Length = 819
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/834 (42%), Positives = 539/834 (64%), Gaps = 39/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV+ GRALPDVRDGLKPVHRRI+++M LGL+ K ++KC
Sbjct: 6 KILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY++LVRMAQDFS+RY L+ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI+++TV+F+PNFD ++EPS+LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MSKIS-MELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N + + +L+ + GPDFPT GLI+G GI +AY TGRG++ +R K
Sbjct: 185 NLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + R +++ EIPYQ NKS L+E +A LV++K ++GISD+RDESDR GMRIV
Sbjct: 245 AEIE---EEKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+P+IV+N LY+ T LQ +F M+ +++ QP+ + LKE+L +++F+ V+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + R HI+EG+ + LD++D VI+++R + + + A L + F LSEKQA AI
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAI 421
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E K LME+I E+L + +L +I++E+IE+KN++ R
Sbjct: 422 LDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERK 481
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + +D D+I + ++++ ++ GY+KR+ +T++ Q RG G + +D
Sbjct: 482 TEIVKGEH-DIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDF 540
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H +L+F++RG VY +AY+IPE R A GT +V I+ + + E+I ++I +
Sbjct: 541 IENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIENNEKIQTVIGL 600
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ + VM T NG IKK ++ +SSIR G+ AI L DEL V+ ++ + +
Sbjct: 601 KDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIV 660
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+QNG I + + +R + R G + L++ DK SM+++
Sbjct: 661 TQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLG----------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAEDRLAAVFVVGFSLA 859
LL +SE+G GKR + + P++R G+I YK + D+ + F
Sbjct: 704 ----DEALLSISENGFGKRTDIEEY---PIHRRGGKGVITYKIT--DKTGPIVGARFV-- 752
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+ D++++LV+ RI V +IS +R A GV LMR KI + + I
Sbjct: 753 ---KEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803
>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
Length = 828
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/845 (42%), Positives = 545/845 (64%), Gaps = 36/845 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EE+ S+I YSMSV++ RALPDVRDGLKPVHRRI++ +HELG++ KP+ K
Sbjct: 9 KILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDFS RYPLI GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++ ML ADID+DTV+F PN+DE ++EP ++PA+ P LL+NG++GIAVGMATNIPPH
Sbjct: 129 MAKITQYML-ADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ A I NPE ++EL+ Y+ GPDFPTG IMG GI+ AYRTG+G R K
Sbjct: 188 NLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
VE ++ KS +M +I+ EIPY NK+ LVEKIAELV K ++GI+D+RDESDR+GMRIV
Sbjct: 248 AHVEEME-KSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P +++N LY+ T ++ SF N++ ++DGQPK + LK+++ F++ + V+ R
Sbjct: 307 MELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HI+EG+ + LD +D VI I+R + +A L F LS+KQ+ AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ + + E I L+ +L+S + +L +I+QE+ E+K +F R
Sbjct: 427 VDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDERR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++ D+I ++E+++ +S +GY+KRM NT+ Q RG G R D
Sbjct: 487 TEI-SFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSIIP 681
+ H ++L+F+ RG VY +A++IPE R GT LV +LS++ E+IT+++
Sbjct: 546 VEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLS 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ ++ D L M T G +KK L + S R G+IAI L DEL VR D+ + +
Sbjct: 606 IRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIII 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++NG+ I +R + R G + L+ D + SMD+I E E
Sbjct: 666 ATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVI-------YEEEAE----- 713
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
+L ++E G KR LS +R G+I K +A+ +L + V+
Sbjct: 714 --------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVM------ 759
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE--PE 918
+ ++++++ G + R +V IS Q R A+GV+ MR+ S K+ + +++ E E
Sbjct: 760 --RPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIGES-KVVAIAVVDNKEDAEE 816
Query: 919 TDLFL 923
+DL L
Sbjct: 817 SDLEL 821
>gi|268317740|ref|YP_003291459.1| DNA gyrase subunit A [Rhodothermus marinus DSM 4252]
gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
Length = 853
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/855 (42%), Positives = 532/855 (62%), Gaps = 67/855 (7%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PRI+PV + EEM SYI YSMSV++GRALPDVRDGLKPVHRR+L+ M+ELGL++ P+K
Sbjct: 5 KPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD AVYD++VRMAQDF++RYPL+ G GNFGSID D AAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL L+E M L DID+DTV+F NFD S KEP +LPA LP L++NGA GIAVGMAT IP
Sbjct: 125 ARLTRLAEEM-LRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE VD L A+I NP+ +L ELL+++P PDFPTGG+I G G+ +AY TGRGRI +R
Sbjct: 184 PHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRILIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E + + RM ++I EIPYQ NKS L+EKIA LV + +DGI+DIRDESDR G+R
Sbjct: 244 ARIHEE--EIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+V+EL++ A P ++ N LY+ T Q +F NMV +++G+P+ + LKE+++ +LD R VV
Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKD---------- 490
RR RF+L + +ER HI+EG+ + LD+LD VI I+R + A L +
Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421
Query: 491 -------------EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
F L+E QA+AIL + L RLT LER+K +E + L+++I +L +L+
Sbjct: 422 QRERLGLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILA 481
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
S Q+I +E++ELK +++ R + ++ A G D+I ++++++ +S +G +KR
Sbjct: 482 SEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLIKRT 541
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+ + Q RG +G +R +D + C+ HD++L+F+D G Y R Y IPE +R
Sbjct: 542 PVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPEGSR 601
Query: 658 NAAGTPLVQILSLSDGERITSIIPVS-------EFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+ G + ++ ++ +R+ +++ + EF +++M T G +KK L FS
Sbjct: 602 TSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEAFSR 661
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIAI GDEL V +AS G V+ +R + RNTRG +
Sbjct: 662 PRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGVRGIA 721
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+ G+++ M + +PE S P +L +S +G+GKR PL +
Sbjct: 722 LETGEQVVGMVAV----------SPEAS---------PCILSISANGYGKRTPLEEY--- 759
Query: 831 PLNRVGLIG---YKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
P++R G G K + RL A+ V + + +++++Q+G + RI V DIS
Sbjct: 760 PVHRRGGKGVWTMKITPRTGRLIAIKAV--------QDTDDLMIITQNGLMIRIHVADIS 811
Query: 887 IQARYARGVILMRLE 901
R+ +GV L++L+
Sbjct: 812 RMGRHTQGVRLIQLK 826
>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
gi|423075891|ref|ZP_17064605.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DP7]
gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
gi|361853119|gb|EHL05305.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DP7]
Length = 828
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/819 (42%), Positives = 531/819 (64%), Gaps = 33/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EE+ S+I YSMSV++ RALPDVRDGLKPVHRRI++ +HELG++ KP+ K
Sbjct: 9 KILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDFS RYPLI GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++ ML ADID+DTV+F PN+DE ++EP ++PA+ P LL+NG++GIAVGMATNIPPH
Sbjct: 129 MSKITQYML-ADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ A I NPE ++EL+ Y+ GPDFPTG IMG GI+ AYRTG+G R K
Sbjct: 188 NLTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
VE ++ KS +M +I+ EIPY NK+ LVEKIAELV K ++GI+D+RDESDR+GMRIV
Sbjct: 248 AHVEEME-KSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P +++N LY+ T ++ SF N++ ++DGQPK + LK+++ F++ + V+ R
Sbjct: 307 MELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HI+EG+ + LD +D VI I+R + +A L F LS+KQ+ AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ + + E I L+ +L+S + +L +I+QE+ E+K +F R
Sbjct: 427 VDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDERR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++ D+I ++E+++ +S +GY+KRM NT+ Q RG G R D
Sbjct: 487 TEI-SFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSIIP 681
+ H ++L+F+ RG VY +A++IPE R GT LV +LS++ E+IT+++
Sbjct: 546 VEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLS 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ ++ D L M T G +KK L + S R G+IAI L DEL VR D+ + +
Sbjct: 606 IRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIII 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++NG+ I +R + R G + L+ D + SMD+I E E
Sbjct: 666 ATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVI-------YEEEAE----- 713
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
+L ++E G KR LS +R G+I K +A+ +L + V+
Sbjct: 714 --------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVM------ 759
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ ++++++ G + R +V IS Q R A+GV+ MR
Sbjct: 760 --RPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMR 796
>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
Length = 820
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/827 (43%), Positives = 539/827 (65%), Gaps = 34/827 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I +++ E + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM+ELGL+SR +KK A
Sbjct: 11 IQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAAYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+AVY++LVRMAQDFS+R PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTEARM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E LL DID+DTV+F+PN+D++ EP +LP+R+P LLLNG+SGIAVGMATNIPPH
Sbjct: 131 TPIAEE-LLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHR 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L EL+D L LI NP+A L E++E++ GPDFPTGG+I G GIL+AY+TGRGRI VR KT
Sbjct: 190 LDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKVRAKT 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R ++I EIPYQ NK+ L+E+IA++V K L+GIS+IRDESDR G+R+VI
Sbjct: 250 HIEKVKN---REVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRVVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ I++N+LY+ T ++ +F ++ I++ +PK L E+L FL+ R ++V RR
Sbjct: 307 ELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVIRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++L + K R HI+EG++ LDN+D VI ++ + TA L ++F+L+E QA+AIL
Sbjct: 367 TIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEKFELTEIQANAIL 426
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E K LME+I +L +L S + + ++I+ E++E+K +F+TPRL+
Sbjct: 427 DMKLQRLTGLEREKLENEYKELMEEIERLSAILKSEEKLNEIIKTELLEIKEKFTTPRLT 486
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ ++ ++D D+IPN+ M++ I+ +GY+KR+ + Q RG GK+ +D +
Sbjct: 487 EIVESYE-EIDIEDLIPNEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKTAVTTYEDDFI 545
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
DF + HD +++ +DRG +Y + YKIPE R A G +V +L L E+I +IIP +
Sbjct: 546 EDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAGRTAKGKAVVNLLQLQPDEKIKAIIPTT 605
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND-DLVAMA 742
+F+ D+ L T NG +K+ +L FS+IR+ G+ AI L DEL + + + +
Sbjct: 606 DFSEDKSLAFFTKNGIVKRTNLAEFSNIRSKGVRAITLDESDELVEAKIVKPETKWLFII 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ GM I +R + R+ RG +R K +GD + + I +
Sbjct: 666 TKKGMCIRFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEEQE------------ 713
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
LL VSE G GKR S +R+ G+I K + + V
Sbjct: 714 --------LLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLTHKTGDVVGVVT------- 758
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
E+++ +++++ SG + R+ + I R GV+++RLE K+ S
Sbjct: 759 VENNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVS 805
>gi|452991699|emb|CCQ96923.1| DNA gyrase (subunit A) [Clostridium ultunense Esp]
Length = 814
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/809 (44%), Positives = 541/809 (66%), Gaps = 34/809 (4%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ELG++ K ++K ARVVG+VLGK
Sbjct: 22 MKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTPDKQYRKSARVVGDVLGK 81
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPH D +VYD++VR+AQDF+ RYPL+ GHGNFGS+D D AAAMRYTE ++ L+ ML
Sbjct: 82 YHPHSDTSVYDAMVRLAQDFNTRYPLVNGHGNFGSVDGDSAAAMRYTEVKMTKLTLEML- 140
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI+++T++++PNFDE+ KEP +LP+R P LL+NG+SGIAVGMATNIPPHNL E++D +
Sbjct: 141 RDINKETIDYMPNFDETLKEPIVLPSRFPNLLVNGSSGIAVGMATNIPPHNLKEVIDGII 200
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
LI NPE +++L+ + GPDFPTG +IMG GI A++TGRG+I +R E+E +
Sbjct: 201 MLIENPEIDIEDLMGVIKGPDFPTGAMIMGRDGIKSAFKTGRGKIRIRAVAEIE--EYTK 258
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
R +II EIPYQ NK+ L+EKIAELV +K L+GISD+RDESDR GMRIVIELKR A+P+
Sbjct: 259 GRDKIIITEIPYQVNKARLIEKIAELVRDKKLEGISDLRDESDRDGMRIVIELKRDANPN 318
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
IV+N+LY+ T LQ +F M+ +++ +P+ + +K++L +L+ + ++ RR +F L + +
Sbjct: 319 IVLNNLYKQTQLQVTFGVIMLALVNNEPRVLNIKQILTYYLEHQKEIITRRTQFDLDKAE 378
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTM 512
R HIVEG+ + LDN+D VI I+R + +TA L + F+LSEKQA AILDM LRRLT
Sbjct: 379 ARAHIVEGLKIALDNIDEVINIIRSSKEEATAKERLMNSFELSEKQAQAILDMRLRRLTG 438
Query: 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLEDADSG 571
LER+K +E + L+++I + E+L+S + I ++I+ E++E+K RF R + ++ AD
Sbjct: 439 LEREKLEEEYEALIKEINRFREILASERLIYEIIKDELLEIKERFGDRRRTRIMPSAD-- 496
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
++D D+I +++++ ++ GY+KRM +T+ +Q RG G + R D + + +
Sbjct: 497 EIDIEDMIEEEDVIITLTHYGYIKRMPQDTYKIQRRGGKGITGLTTREEDFVENLFITST 556
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
HD +L+F+++G VYS +AY+IPE R A GT +V +L+L+ E I+++IP+ ++ L
Sbjct: 557 HDTILFFTNKGRVYSLKAYEIPEGRRQARGTAIVNLLNLTGDESISAVIPIEKYDPKSNL 616
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
V +T NG IKK L+ F +IR GIIAI L DEL VR + + + + GM I
Sbjct: 617 VFITKNGLIKKTKLSNFKNIRRNGIIAISLKEEDELIAVRKTNGNRQIIVVTSMGMSIRF 676
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
S +R + RN G +A+RLK+ D++ +MD+I G LL
Sbjct: 677 SEKDVREMGRNAMGVIAIRLKNDDEVVAMDLI---------------------EEGKDLL 715
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLV 871
VSE G GKR PL +R NR G+ ++ +D+ + + + +++++++
Sbjct: 716 VVSEFGFGKRTPLDEYR--IQNRGGVGIKTYNVKDKTGKLVSAKVT-----DENDEIIMI 768
Query: 872 SQSGTVNRIKVRDISIQARYARGVILMRL 900
S SG + R+ + IS R +GV LM++
Sbjct: 769 SMSGIIIRLISKGISSMGRNTQGVTLMKI 797
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
+ ++ LT GYIK++ + + R GI + D ++ + + D + +
Sbjct: 507 EDVIITLTHYGYIKRMPQDTYKIQRRGGKGITGLTTREEDFVENLFITSTHDTILFFTNK 566
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKD--GDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G V I R RG+ + L + GD+ S +IP + D SN
Sbjct: 567 GRVYSLKAYEIPEGRRQARGTAIVNLLNLTGDESISA-VIPIEKY--------DPKSN-- 615
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
L+F++++G K+ LS+F+ + N G+I ED L AV
Sbjct: 616 ------LVFITKNGLIKKTKLSNFKNIRRN--GIIAISLKEEDELIAV--------RKTN 659
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFL 923
+ Q+++V+ G R +D+ R A GVI +RL+ ++ + LI E DL +
Sbjct: 660 GNRQIIVVTSMGMSIRFSEKDVREMGRNAMGVIAIRLKNDDEVVAMDLI---EEGKDLLV 716
Query: 924 PS 925
S
Sbjct: 717 VS 718
>gi|374628574|ref|ZP_09700959.1| DNA gyrase subunit A [Methanoplanus limicola DSM 2279]
gi|373906687|gb|EHQ34791.1| DNA gyrase subunit A [Methanoplanus limicola DSM 2279]
Length = 856
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/819 (44%), Positives = 526/819 (64%), Gaps = 36/819 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ V + EEM SY+ Y+MSV++GRA+PDVRDGLKPVHRR LFAM E+G + KP+KK
Sbjct: 14 RIISVNIEEEMKSSYLDYAMSVIIGRAIPDVRDGLKPVHRRTLFAMGEMGNTHDKPYKKS 73
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD ++YD+LV+MAQ FS R L+ G GNFGSID D AAAMRYTE R
Sbjct: 74 ARIVGEVMGKYHPHGDASIYDTLVKMAQTFSYRCTLVEGQGNFGSIDGDSAAAMRYTEAR 133
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ +SEA +L DID+DTVNF+PNFDES KEP +LP+++P LL+NG+ GIAVGMAT +PPH
Sbjct: 134 LDPVSEA-ILEDIDKDTVNFIPNFDESLKEPVVLPSKIPNLLVNGSDGIAVGMATKMPPH 192
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+GE+ +C +I NPE ++ E++E++PGPDFPTGG+I+G GI++AY TGRGRI VRG
Sbjct: 193 NIGEVCRGVCEVIDNPEISVSEIMEHIPGPDFPTGGVILGRSGIVNAYATGRGRIKVRGV 252
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
EVE + +S+ +II EIPYQ NK+ L+E IAELV++K +DGISD+RDESD+ G+R+V
Sbjct: 253 AEVEDMGKRSR---IIITEIPYQVNKARLIEHIAELVKDKRIDGISDLRDESDKDGIRVV 309
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELK G P +V+N L++ T L+S+F + I+DG+P+ +G+KE++ F+ R VV R
Sbjct: 310 VELKSGIVPLVVLNQLFKHTPLESTFGVINLSIVDGKPRVLGIKELIGEFIKHRKEVVFR 369
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L + ++R HI+ G+++ LDN+D VI +R + + A AAL D F L QADAI
Sbjct: 370 RTRFELKKAEDRLHILRGLLLALDNIDAVIAAIRASKDSEEAKAALVDNFGLDLIQADAI 429
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L M LRRL LE +K +DE L++++ +L ++S ++IL I +E +E+ +FS R
Sbjct: 430 LKMQLRRLAALEHQKILDERDGLLKEVERLNLIISDDEHILAKIREETVEMGEKFSDERR 489
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D D D+I N +L++++ + Y+K M +T+ Q RG G + DA
Sbjct: 490 TKIT-HDVDDFDKEDLIENKPVLISLTGENYIKSMPLDTYKGQKRGGKGIIGMACKDEDA 548
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V +HD++L F+ G VY + Y IPE +R + G +V +L+L D E+++++IPV
Sbjct: 549 VKSVFVANSHDYLLCFTSAGRVYWLKVYDIPEASRQSRGKAIVNLLNLGD-EKVSALIPV 607
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
SEF D+F + T +G + K+ + FS RTTG+ AI L DEL V +D + +
Sbjct: 608 SEFKSDEFFLFSTKHGMVVKIPQDEFSRPRTTGMNAITLRDDDELVGVLKMGDDGELVLT 667
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S G + D I RN G M+L+ D++ KD+ D
Sbjct: 668 SVQGQTLRMGADTIPLRHRNALGVKGMKLRFMDEL-----------KDISAVEMD----- 711
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL V+E G+GKR FR +G+ + + A V
Sbjct: 712 ------HLLTVTEKGYGKRTDFGEFRGHGRATMGVRNIQTDVAGGVVASRAV-------- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D++++L+S SG V R KV +ISIQ R RGV +M+++
Sbjct: 758 SDDDEIILMSSSGIVIRTKVSEISIQKRGTRGVRVMKVD 796
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQ 867
P L+ ++ + K +PL +++ G+IG ED + +VFV S +
Sbjct: 509 PVLISLTGENYIKSMPLDTYKGQKRGGKGIIGMACKDEDAVKSVFVA--------NSHDY 560
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD-LFLPST 926
++ + +G V +KV DI +R +RG ++ L G + ++LI V+E ++D FL ST
Sbjct: 561 LLCFTSAGRVYWLKVYDIPEASRQSRGKAIVNLLNLGDEKVSALIPVSEFKSDEFFLFST 620
>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
Length = 835
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/823 (42%), Positives = 539/823 (65%), Gaps = 43/823 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS R L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + AL NPE T+++L+E++ GPDFPTG I+G GI AY TG+G I +R
Sbjct: 187 NLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGSIMIRSN 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + K +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 ARIEDHNGKP---WIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + ++++N+LY+ TALQ+SF N + +++G+P+ + LKE L +LD + V+ R
Sbjct: 304 IELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ V LD+LD VI ++R + + A L ++F LS QA AI
Sbjct: 364 RTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQFDLSHDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K +E LM +I +L+ +L+ + +L++I +E++E+++RF R
Sbjct: 424 LDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREELLEIRDRFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++D D+IP +++ +S GY+KR+ +T+ Q RG G+ V + +D
Sbjct: 484 TTITFGED-SMEDEDLIPRQNVVITVSHHGYIKRIPVSTYRSQKRG--GRGVQGMGTHD- 539
Query: 623 MSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
DF+ V +HDH+L+F+++G VY + Y++PE R + G P++ +L + E I++
Sbjct: 540 -EDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIINLLQIEKDEYIST 598
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+SEF + L+ +T G K+ L+ F +IR G+ AI+L GDEL VR
Sbjct: 599 VIPISEFDANHSLIFMTKYGVSKRTELDAFKNIRKGGLFAIKLREGDELHGVRLTDGSKE 658
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++ GM I S +R + R G +RL+ D++ MDII P+
Sbjct: 659 LVVGTKKGMSIRFSETDVRLMGRTATGVKGLRLQSEDEVVGMDIIE----------PDSD 708
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+L V+E+G GKR P+ +R+ G+ + ++ +L ++ VVG
Sbjct: 709 -----------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNGQLVSLKVVG-- 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
SD +++++ +G + RI V DIS +R +GV L+RL
Sbjct: 756 ------SDHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRL 792
>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
Length = 1031
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/852 (42%), Positives = 539/852 (63%), Gaps = 57/852 (6%)
Query: 72 SVATVGPNVS-PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHE 130
V GP V ++V V L E+ S++ Y+MS++LGRALPDVRDGLKPVHRRIL+AM+
Sbjct: 152 GVGPPGPLVGGDQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYG 211
Query: 131 LGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDA 190
L L+ +KCARVVGEVLGK+HPHGD AVYD+LVRMAQDF + PLI+GHGNFGSID
Sbjct: 212 LNLNPEGTHRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDN 271
Query: 191 DPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASG 250
DPAAAMRYTEC+L ++++ LL DI+ DTV+ + NFD ++KEP +LP+RLP LL+NGA+G
Sbjct: 272 DPAAAMRYTECKLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATG 331
Query: 251 IAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAY 310
IAVGMATNIPPHNLGE+V ALI NP +L +P PDFPTGG IMG G Y
Sbjct: 332 IAVGMATNIPPHNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIMGLAGARKLY 391
Query: 311 RTGRGRITVRGKTEVELLDSK--SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGIS 368
T G +T+R T +E++++K +KR V++ E+PYQ NKS L++++AE+V +K L+GIS
Sbjct: 392 TTSNGGVTLRATTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGIS 451
Query: 369 DIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGI-LDG-QPKQMGLK 426
D+RDESDR G+R+V+ELKR A+P +V N+L++ T LQ+SFS NM+ + DG +P + L+
Sbjct: 452 DLRDESDRDGVRVVVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLR 511
Query: 427 EVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASA 486
+Q+F+DFR + V RR F+L +V+ R HIV+G++ L +D VI +VR + A
Sbjct: 512 AAIQSFVDFRFTTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARD 571
Query: 487 ALKDE-FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQL 545
L E + LS++QADAIL + L RLT +E K E++ L + +LE +++ ++ +
Sbjct: 572 GLMAEPYGLSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLEGVMNEDSKVMDI 631
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
I +E+ E KN+ + PR +M++ D G+L + D++ ND ++ ++ GY+KRM F Q
Sbjct: 632 IVEELTEAKNKHAVPRRTMIK-PDEGELHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQ 690
Query: 606 NRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPL 664
NRGT GK+ K+ + D + F C+ HD +L+ SD+G+ Y RA+++P +R A G P+
Sbjct: 691 NRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQVPVGSRTAKGVPV 750
Query: 665 VQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPG 724
Q+L ++ E+I S++ V +F D++LV+LT GYIK+ L F S + G+I I L
Sbjct: 751 PQVLPIAGDEQIASVLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGED 810
Query: 725 DELKWVRCCTNDDLVAMASQNGMV--ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
D L+WV+ C +++ + + S+ G L++ +R R +RG
Sbjct: 811 DTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRG----------------- 853
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
E+ HS LL ++ G+GKRV L+ F+ G+I K
Sbjct: 854 -----------VKEEGHS---------LLVLTTRGYGKRVALNEFKTTRRGGKGVIALKL 893
Query: 843 SA--EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
ED LA +VG +D++++L + GT+ R + I+ Q+R A GVI+ +L
Sbjct: 894 RQKLEDTLACFRIVG--------ADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKL 945
Query: 901 ELSGKIQSASLI 912
+ + I+ +L+
Sbjct: 946 DANDGIKDVALV 957
>gi|424046717|ref|ZP_17784279.1| DNA gyrase, A subunit [Vibrio cholerae HENC-03]
gi|408884777|gb|EKM23505.1| DNA gyrase, A subunit [Vibrio cholerae HENC-03]
Length = 879
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 551/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A + +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
gi|444425509|ref|ZP_21220948.1| DNA gyrase subunit A [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
gi|444241240|gb|ELU52767.1| DNA gyrase subunit A [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 879
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 551/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A + +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|406997614|gb|EKE15644.1| hypothetical protein ACD_11C00116G0031 [uncultured bacterium]
Length = 817
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/828 (43%), Positives = 523/828 (63%), Gaps = 26/828 (3%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P L EE+ SY+ Y+MSV++ RALPD+RDGLKPVHRRIL++M E GL S F+K A V
Sbjct: 15 PRALTEEVQQSYLDYAMSVIVSRALPDIRDGLKPVHRRILYSMWESGLRSSAKFRKSATV 74
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD AVYDS+VRMAQDFSLRYPLI G GNFGS+D D AAA RYTE +L+
Sbjct: 75 VGEVLGKYHPHGDTAVYDSMVRMAQDFSLRYPLIWGQGNFGSMDGDGAAAYRYTEAKLKT 134
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E ML DI++DTV+FVPN+D KEP +LPA+LP LLLNG GIAVGMATNIPPHNLG
Sbjct: 135 IAEEMLF-DIEKDTVDFVPNYDGVHKEPVVLPAKLPQLLLNGTMGIAVGMATNIPPHNLG 193
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
ELV + LI NPEAT+ +LL+++ GPDFPTGGL+ G+ DAY+TG+G+I R KT++
Sbjct: 194 ELVGAIEHLIDNPEATVDDLLKFVKGPDFPTGGLLYDGPGLKDAYQTGKGKIVTRSKTDI 253
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+++KS +I+ EI Y TNKS L+ K+A+LV L GI DIRDESD+ G+RIVIEL
Sbjct: 254 --VETKSGMFQIIVSEITYATNKSALITKMADLVREGKLLGIRDIRDESDKEGVRIVIEL 311
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRA 444
K+ A P ++N LY +T LQ +F+ NM+ +++G P+ + LK +L+ F+ R VV RRA
Sbjct: 312 KKDAYPQKILNKLYAMTDLQKNFNVNMLALVNGIDPQILNLKLILEHFVLHRQKVVTRRA 371
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
+F+L + ++R HI+EG+ LDN+D VI ++++P+ A L +FKLSE+Q AIL+
Sbjct: 372 QFELKKAQDRAHILEGLKKALDNIDDVIETIKKSPTREEAHTNLMKKFKLSERQTTAILE 431
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+ L LERKK DE + ++ I KLE+LL K IL +I+ E+ E++ ++ R +
Sbjct: 432 MRLQTLAGLERKKIEDELEEKLKLIAKLEDLLKYPKKILAVIKDELAEIREKYGDERRTK 491
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ + D+IPN+E ++ I++ GY+KRM P+ + +Q RG G R D +
Sbjct: 492 VIRGGIQEFKQEDLIPNEEAIITITQDGYIKRMNPSAYKVQKRGGKGVMGATTREGDVIE 551
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
HD++++F++ G V+ +AY+IPE +R A G +V L LS E+IT++IP ++
Sbjct: 552 KVSSVSTHDNLMFFTNSGKVFQTKAYEIPESSRTAKGQAVVNFLQLSQEEKITAMIPYNK 611
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
+F M T G +KK L F ++R +G+IAI L GD L WV T D V +++
Sbjct: 612 DVIYKFFFMTTTLGVVKKTKLEDFDNVRRSGLIAIGLDAGDTLNWVSATTGTDEVIISTA 671
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +R + RN G ++LK D++ MD + KG
Sbjct: 672 QGQAIRFKESDVRPMGRNAAGVRGIKLKGNDRVVGMDTV------------------AKG 713
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
G LL ++ +G GKR L ++ + + G G K +A+ +VG L E
Sbjct: 714 QPGNQLLIITSNGFGKRTDLKFYK---IQKRGGSGIK-TAKITSKTGPMVGGGLLNLDEI 769
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ ++ S G + RI + IS+ R +GV +M+ + ++ +A+++
Sbjct: 770 EGDFIITSNKGQIIRIPLASISVLGRATQGVRIMKPQAGDQVSAAAIL 817
>gi|402835643|ref|ZP_10884206.1| DNA gyrase, A subunit [Mogibacterium sp. CM50]
gi|402273925|gb|EJU23115.1| DNA gyrase, A subunit [Mogibacterium sp. CM50]
Length = 831
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/829 (42%), Positives = 540/829 (65%), Gaps = 37/829 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ E+++EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+ M LG + KP KK
Sbjct: 9 KIITHEIYDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYGMSILGTTPDKPHKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+++YD++V+MAQDFS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVMGKYHPHGDSSIYDAMVKMAQDFSTRYPLVDGHGNFGSVDGDGAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ S M + DID+DTV+F+ NFD +KEP +LP+R+P LL+NG++GIAVGMAT++PPH
Sbjct: 129 MSPFSLQM-VRDIDKDTVDFMDNFDGEEKEPVVLPSRVPNLLINGSNGIAVGMATSVPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL + +D I + T EL++ + PDFPTG +I+G +AY TG G+ITVR K
Sbjct: 188 NLSDTIDACIKRIDDENCTNDELIKIIKAPDFPTGAMILGREAAKEAYETGTGKITVRSK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E ++ +M ++I EIP+Q NK+ L+E +A+LV NK ++G+S IRDES+R GMRIV
Sbjct: 248 SEIE--ETARGKMRIVITEIPFQVNKARLIESMADLVRNKKVEGVSAIRDESNREGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ +P++++N LY+ T LQ+++S M+ +++G+PK + L E++ +L + V+ R
Sbjct: 306 IELKKDVNPNVILNRLYKHTQLQATYSMIMLALVNGEPKILKLVEIIDEYLKHQRIVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L++ + R HI+EG+++ LDN+D VI+++R S + A L F LSE QA AI
Sbjct: 366 RTKFDLAKAEARAHILEGLLIALDNIDEVIKVIR--SSYNDAKEKLMVRFGLSEVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RL LER+K +E LME+I + +L+ ++ +I+ E++E+K+++ R
Sbjct: 424 LDMRLARLQGLEREKIENEHNELMEKIAYYKSILADEHKLMGVIKDELLEIKHKYGDGRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + AD G +D+ +I +++ + ++ GY+KR+ NT+ Q RG G R D
Sbjct: 484 TKIV-ADDGGIDEEYLIDEEDVAVTLTHLGYIKRVPENTYKAQRRGGKGIVGLTTRDTDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D I+ HD++++F+D G VY +AY+IPE +R A GTP++ L+L GER+T++IPV
Sbjct: 543 VKDLIITSTHDYLMFFTDLGKVYKIKAYEIPEASRTAKGTPVINFLNLDQGERVTAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EFA D +L+M+T NG IKK ++ F + R TG+IAI L D+L V + D+ V +
Sbjct: 603 KEFADDNYLIMVTKNGTIKKTPMSQFDTNRKTGLIAITLKDDDKLIAVSQSSGDESVYVI 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I D +RS+ R+ G A+ L DGD++ SM +L+ T E
Sbjct: 663 TKKGKSITFPEDDVRSMGRSAGGVRAISLDDGDEVVSM---------ELDSTGERE---- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY---KFSAEDRLAAVFVVGFSLA 859
LL +++ G GKR L +R G+ Y KF+ L VG +L
Sbjct: 710 -------LLVMTKKGFGKRTNLDEYRVQTRGGKGVATYDKTKFAKTGEL-----VGATLV 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
D D++++L++ +G + RI+ +IS R +GV +M++E +I S
Sbjct: 758 SD---DDEIMLINSNGVIIRIRANEISKSGRTTQGVKIMKVEDGDEIVS 803
>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
35098]
gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
35098]
Length = 814
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/838 (42%), Positives = 542/838 (64%), Gaps = 33/838 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ ++L +M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 7 IMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPTRKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GKFHPHGD+A+YD+LVR+AQDFS RYPL +G GNFGSID D AAAMRYTE R+
Sbjct: 67 RVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYTEVRM 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI +DTV+F+PNFDE + EP++LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 127 SKIAKEML-RDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMAPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D A + +PE ++ +L+E +PGPDFPTG LI+G GI +AY+TGRG+I R
Sbjct: 186 LGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQRAVA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E K R +II EIPYQ NK+ L+EKIA+LV+ K +DGISDIRDESDR GMRIV+
Sbjct: 246 KIEPF--KKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIVV 303
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR ++P+IV+N+LY+ T L+++F + ++ G+PK + LKE+++ ++D + VV RR
Sbjct: 304 EIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTRR 363
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F LS+ ++R+HIVEG+++ +D++D +I+I+R + N D+FKL+E Q+ AIL
Sbjct: 364 TTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDKFKLTEVQSQAIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE +K E+ L I L +L+S + ++ LI E+ E+K +++ R +
Sbjct: 424 DMQLKRLSGLEIEKLNAENDELARMIDYLLSILNSEETLINLIIDEMTEIKEKYADDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G+++ ++ +++L+ +++ GY+KR+ +T+ +QNRG G + G + D +
Sbjct: 484 QIV-PDEGEIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFI 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
I H+ +L+F+ G V+S AY IPE +R + G ++ IL+L GERIT ++ +S
Sbjct: 543 KKIITTNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLESGERITEMMTLS 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ + +V+ T NG IKK F++IR GIIAI L D+L VR ++ + +++
Sbjct: 603 DLHKNSQIVLQTKNGTIKKTDAENFANIRKNGIIAISLQENDKLISVRQIDKEEELLIST 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+NGM I + +RS+ R +G A++L D++ SM N+K
Sbjct: 663 KNGMTIQFNSKDLRSMGRIAQGVKAIKLDKDDEVVSM--------------------NIK 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G +LL V+E+ +GK+ ++F+ G+ +K + E V + L
Sbjct: 703 GEE-TYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVT-EKTGKVVDTLPVDL----- 755
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-ELSGKIQSASLISVTEPETD 920
D +++VS SG + R+ VRDISI R GV L L + +I S + S E E +
Sbjct: 756 -DNDIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTKYSTLEEEEE 812
>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
Length = 885
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/877 (42%), Positives = 555/877 (63%), Gaps = 74/877 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM LG KP
Sbjct: 9 DLAKGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKP 68
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 69 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 128
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP R+P LL+NG+SGIAVGMATN
Sbjct: 129 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATN 187
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ A I N + T+ EL+ Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 188 IPPHNLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 247
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K +E K+ + +I+ EIPYQ NK+ ++EKIAELV++K ++GIS +RDESD+ G
Sbjct: 248 MRSKANIEA--DKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDG 305
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+L+ LT LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 306 MRIVIECKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRRE 365
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I +++ APS + A L
Sbjct: 366 VVTRRTIFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNV 425
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ ++ L+E+QA AIL++ L RLT LE +K +DE K
Sbjct: 426 ADMLERAGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKA 485
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDI---IPN 581
L+++I +L +L+S + ++++I E+I +++ + R + + A + DIDI I
Sbjct: 486 LLDEIAELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAA----IHDIDIEDLITQ 541
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S +GYVK + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 542 EDVVVTLSREGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTR 601
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G YS + +++P+ +R A G P+V IL L +GERIT+I+PVSE++ D+F+ M T +G +K
Sbjct: 602 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVK 661
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+ +R G+IA+ L D L V T + + + S+ G V+ S + +R + R
Sbjct: 662 KTSLDQFAKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGMGR 721
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L D++ S+ I+P S+ +L V+E+G+GKR
Sbjct: 722 TASGVRGMKLTGEDQVVSL-IVP--------------------SNEGDILTVTENGYGKR 760
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
+S + G++ K S DR + VVG AEDG ++ ++++ +GT+ R +
Sbjct: 761 TKISEYPTKSRATQGVVSIKVS--DRNGS--VVGAVQAEDG---DEFMMITDAGTLVRTR 813
Query: 882 VRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
V ++S R +GV L+R + L + EPE
Sbjct: 814 VSEVSQVGRNTQGVTLIRTAEDENV--VGLQRIDEPE 848
>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
Length = 853
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/850 (43%), Positives = 537/850 (63%), Gaps = 38/850 (4%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPD RDGLKPVHRRILFAM +LG + KPFKK AR
Sbjct: 9 VSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD+AVYD+LVRMAQ +S+R+ L+ G GNFGS+D D AAMRYTE R+
Sbjct: 69 VVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLADID+DTV+F PN+DES +EP +LPAR P LL+NG+ GIAVGMATNIPPHNL
Sbjct: 129 RLA-GELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E ++ AL++NPE EL++ MPGPDFPTGG I G GI A+ TGRG +T+R +
Sbjct: 188 AETINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSAFMTGRGSVTMRARAI 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE+ + ++ R +II E+PYQ NK+ L+E IA V +K L+GI+D+RDESDR GMRI IE
Sbjct: 248 VEV-NPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ P +V+N+LY+ T LQ +F CN++ +LDGQPK G++E+L FLD R VV RR
Sbjct: 307 LKKNEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLLHFLDHRRQVVTRRC 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F L++ + R HI+EG+++ LD +D VI+++R + + + A A L + F LS+ QA AILD
Sbjct: 367 LFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILD 426
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LER K E + + I L+ +L+ K ++ +I +E+ +++R++ PR S
Sbjct: 427 MRLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADPRRSE 486
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ D ++ +L D+I ++M++ IS +GY+KR + + Q RG GK+ + D ++
Sbjct: 487 IMD-ETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFVA 545
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+V HD++L+FSD+G V+ + Y++P+ A G LV +L + ERI++ + + E
Sbjct: 546 QLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKALVNLLPVEKDERISATLAIRE 605
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F ++F++M T NG +KK L+ + +IR GIIAI+L D L V D+ V +A+
Sbjct: 606 FDENRFIIMATKNGVVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATS 665
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I + +R + R+TRG MRL + SM ++
Sbjct: 666 GGKAIRFAESDVRPMGRSTRGVTGMRLPGDCNVISMTLV--------------------- 704
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAEDG 862
S LL VSE+G GKR +S + G+ K D +AA+ V
Sbjct: 705 SDEATLLAVSENGFGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAALLV--------- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT---EPET 919
D+QV++++ SG + RI++ +S+ R +GV L+ + ++ A ++ E T
Sbjct: 756 HDDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAEQADDELAT 815
Query: 920 DLFLPSTSDK 929
D + T+D+
Sbjct: 816 DELIEGTADE 825
>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
16795]
gi|164604452|gb|EDQ97917.1| DNA gyrase, A subunit [Clostridium bartlettii DSM 16795]
Length = 811
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/835 (43%), Positives = 545/835 (65%), Gaps = 33/835 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+P E+ +EM SYI Y+MSV+ GRALPDVRDGLKPVHRRIL++M+EL L+ KP++K
Sbjct: 8 RIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDKPYRKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD+AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 68 ARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DID++TV+F PNFDES KEP++LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 128 MSKLS-LELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATSIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE +D LI NP+ + EL++Y+ GPDFPTG +IMG I +AYRTGRG++ VR +
Sbjct: 187 NLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKVKVRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E L K K+ +++ EIPYQ NK+ LVE+IAELV++K ++GISD+RDES+R+GMRIV
Sbjct: 247 AEIEEL-PKGKQQ-IVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR + +IV+N+LY+ + L+ +FS M+ +++G P+ + LK++L +++ + VV R
Sbjct: 305 IELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDVVTR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LD +D VI ++R + + A + L D+FKLSE QA AI
Sbjct: 365 RTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKFKLSEIQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L++LT LER+K E LM++I LE +L+ + +L +I+ E++E+K ++S R
Sbjct: 425 LDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILEIKKKYSDARR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S +R D
Sbjct: 485 TEIRHAE-GEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGRGISALTVREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I R H+ +L+F++RG V+ A+++PE R A GT +V +L L E+I ++I V
Sbjct: 544 VKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQLGPNEKIATLIEV 603
Query: 683 SEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
A D +L++ T G +KK + F +I +G+IAI L DEL V+ + V +
Sbjct: 604 DGRADDDSYLLLATKKGIVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKTTNGEKDVLL 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ NGM I IR + R G + L +GDK+ SM +
Sbjct: 664 VTSNGMSIRFDEKDIRPMGRTAMGVKGITLSEGDKVVSMSL------------------- 704
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
G LL VS++G+GKR ++ +R G+ Y S + +VG ++ +
Sbjct: 705 --SDEGEDLLVVSQNGYGKRTDINEYRSQIRAGKGIKTYNMSEK----TGEIVGATMVNN 758
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++++L++ G + R++V DIS+ R GV LM+ + + S + I E
Sbjct: 759 ---EDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVNVVSIAKIDTEE 810
>gi|421493181|ref|ZP_15940538.1| GYRA [Morganella morganii subsp. morganii KT]
gi|455738996|ref|YP_007505262.1| DNA gyrase subunit A [Morganella morganii subsp. morganii KT]
gi|400192349|gb|EJO25488.1| GYRA [Morganella morganii subsp. morganii KT]
gi|455420559|gb|AGG30889.1| DNA gyrase subunit A [Morganella morganii subsp. morganii KT]
Length = 871
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/877 (42%), Positives = 550/877 (62%), Gaps = 71/877 (8%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG K +K
Sbjct: 5 AKEILPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMKELGNDWNKAYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGSID D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSIDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLADID++TV+FVPN+D ++ P ++P R+P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADIDKETVDFVPNYDGTEMIPDVMPTRIPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D A I + + +++ L+E++PGPDFPT +I G GILDAYRTGRG+I +R
Sbjct: 184 PHNLGEVIDGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGILDAYRTGRGKIHIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ EVE D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ GMR
Sbjct: 244 ARAEVET-DEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR A +V+N+LY LT +Q++F NMV + GQPK + LKE+L AF+ R VV
Sbjct: 303 IVIEVKRDAVGEVVLNNLYLLTQMQTTFGINMVALHQGQPKILNLKEILSAFVRHRREVV 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK----------- 489
RR ++L + +ER HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 363 TRRTIYELRKARERAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLLAQAWELGTVAA 422
Query: 490 ---------------DE--------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
DE + L+E QA AILD+ L++LT LE +K +DE + L+
Sbjct: 423 MLAGAGDDAARPEGLDEQFGIRDGLYHLTEVQAQAILDLRLQKLTGLEHEKLLDEYRELL 482
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
E I L +L S + ++++I +E++ +K +F+ R + + + ++ ++ D+I +++++
Sbjct: 483 ELIAGLLHILQSPERLMEVIREELVAVKEQFNDKRRTDITE-NTADINIEDLISQEDVVV 541
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK + Q RG GKS +++ D + +V HD +L FS++G +Y
Sbjct: 542 TLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSNKGKLYW 601
Query: 647 ARAYKIPECTRNAAGTPLVQILSL--SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
+ Y++PE +R A G P++ IL L ERIT+I+PV E+ +F+ M T +G +KK S
Sbjct: 602 LKVYQLPEASRGARGRPIINILPLDQEQNERITAILPVREYEEGKFVFMATASGTVKKTS 661
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R GIIA+ L GDEL V + V + S +G V+ + D +R++ R
Sbjct: 662 LQDFSRPRNAGIIAVNLNEGDELIGVDLTDGSNEVMLFSADGKVVRFAEDAVRAMGRTAT 721
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL D D + S+ IIP +G +L V+E+G+GKR
Sbjct: 722 GVRGIRLGDDDAVVSL-IIP------------------RGEG--EILTVTENGYGKRTAE 760
Query: 825 SSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+ + G+I K S + ++ VG +D+Q+++++ +GT+ R +V
Sbjct: 761 AEYPTKSRATQGVISIKVSERNGKVVGAIQVG--------ADDQIMMITDAGTLVRTRVS 812
Query: 884 DISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++SI R +GV L+R K+ L V EPE D
Sbjct: 813 EVSIVGRNTQGVTLIRTGEEEKV--VGLQRVAEPEED 847
>gi|389818748|ref|ZP_10208923.1| DNA gyrase subunit A [Planococcus antarcticus DSM 14505]
gi|388463658|gb|EIM06005.1| DNA gyrase subunit A [Planococcus antarcticus DSM 14505]
Length = 860
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/823 (42%), Positives = 537/823 (65%), Gaps = 37/823 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S + + + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG++S K +K
Sbjct: 6 SSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITSDKAYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVIGKYHPHGDVAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
++ +S LL D++++T+++ N+D +KEP +LP+R P LL+NG SGIAVGMATNIP
Sbjct: 126 SKMSKIS-MELLRDLNKNTIDYRDNYDGQEKEPVVLPSRFPNLLVNGTSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH+LGE +D + AL NP T +EL+E++PGPDFPTGG+I+G GI AY TG+G + +R
Sbjct: 185 PHHLGETIDAVLALADNPAITTEELMEFIPGPDFPTGGIILGRSGIRRAYETGKGSVLIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + + +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMR
Sbjct: 245 SVVDIET--KANGKEVIIVNEIPYQVNKARLIEKIAELVRDKRIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A S+++N+LY+ TA+Q+SF NM+ ++DG PK +GLKEVL +L+ + V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGINMLALVDGHPKVLGLKEVLFHYLEHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +F+L++ ++R HI+EG+ + LD++D +I ++R + + A L +F L+E+Q+
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER K +E L++ I +L ++L++ IL++I++E++E+K RFS
Sbjct: 423 AILDMRLQRLTGLERDKIEEEYLALVKLIEELRDILANEHRILEIIQEEMLEIKERFSDK 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + +D D+IP + +L ++ GY+KR+ NT+ Q RG G+ V + N
Sbjct: 483 RRTEITTGGAEMFEDEDLIPVEASVLTLTHNGYIKRLPANTYRSQKRG--GRGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD +L+F+++G VY + Y+IPE R A G PLV +L +S E++T+
Sbjct: 541 EDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPEYGRTAKGLPLVNLLEISKEEKVTA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V EF D F T G K+ + +S+IR G+IAI L DEL V+ +
Sbjct: 601 VIRVDEFKEDAFFFFTTREGISKRTPVTNYSNIRQNGLIAISLREEDELISVKLTDGNKE 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG +I IRS+ R G +RL++GD + M+I+ D
Sbjct: 661 MVIGTKNGALIRFPETDIRSMGRTATGVRGIRLREGDAVVGMEIL-------------DP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+ NV L ++E G+GK+ S +R +G+ + + ++ L AV V +
Sbjct: 708 NDNV--------LVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGT 759
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E ++L++ +G + R+ V DIS R +GV L+RL
Sbjct: 760 --------EDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRL 794
>gi|403236813|ref|ZP_10915399.1| DNA gyrase subunit A [Bacillus sp. 10403023]
Length = 838
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/828 (42%), Positives = 543/828 (65%), Gaps = 37/828 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+++ K +KK A
Sbjct: 9 IHEINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+AVYD++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE R+
Sbjct: 69 RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S L+ DI++DT+++ N+D S+KEP++LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 129 SKIS-MELMRDINKDTIDYQDNYDGSEKEPAVLPARFPNLLVNGAAGIAVGMATNIPPHQ 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + A+ +P T+ EL++ +PGPDFPT G I+G GI AY TG+G IT+R K
Sbjct: 188 LGEIIDGVLAISKDPGITIPELMDIIPGPDFPTAGHILGRSGIRKAYETGKGSITLRAKV 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + K+ + +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV+
Sbjct: 248 EIE--EMKNGKEVILVTELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRTGMRIVM 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E++R A+ ++++N+LY+ TALQ++F N++ +++G P+ + LK+ LQ +LD + V++RR
Sbjct: 306 EVRRDANANVLLNNLYKHTALQTTFGINLLALVNGHPRVLNLKQCLQYYLDHQVVVIKRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + + R HI+EG+ + LD++D +I ++R + + A L F LSEKQA AIL
Sbjct: 366 TAFELRKAEARAHILEGLRIALDHIDEIITLIRGSQTTDIAREGLMTRFNLSEKQAQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER K E + L+ I +L+ +L+ + +L++I +E++E+K RF+ R +
Sbjct: 426 DMRLQRLTGLERDKIEAEYQELVALIAELKAILADEEKVLEIIREELLEIKERFNDTRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--D 621
+ ++D D+IP + +++ ++ KGY+KR+ +T+ Q RG G+ + + N D
Sbjct: 486 EILAGGLEMIEDEDLIPRENIIITLTNKGYIKRLPVSTYRSQKRG--GRGIQGMGTNEDD 543
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + HD +L+F+++G VY + Y+IPE +R A G P++ +L + E I +IIP
Sbjct: 544 FVEQLLSTSTHDTILFFTNKGKVYRLKGYEIPEFSRTAKGIPIINLLEIDKEEWINAIIP 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
VSE D FL T G K+ L+ F++IR G+IA+ L GDEL VR + +
Sbjct: 604 VSELVDDWFLFFTTRKGISKRTPLSSFANIRKGGLIAVGLHEGDELISVRLTDGSKDIII 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+++GM+I +RS+ R G + L +GD++ M+I+ L
Sbjct: 664 GTKDGMLIRFPESDVRSMGRTAAGVKGINLSEGDEVVGMEILEDNLD------------- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
+L V+E G+GKR P S +R GL + ++ ++ AV V
Sbjct: 711 --------VLIVTELGYGKRTPASEYRIQSRGGKGLKTVNITEKNGKVIAVKAV------ 756
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
ESD ++L++ G + R+ + DIS R +GV L+RL+ +G + +
Sbjct: 757 TEESD--LMLITADGVLIRMSITDISQIGRTTQGVKLIRLDENGHVAT 802
>gi|410453632|ref|ZP_11307579.1| DNA gyrase subunit A [Bacillus bataviensis LMG 21833]
gi|409932960|gb|EKN69910.1| DNA gyrase subunit A [Bacillus bataviensis LMG 21833]
Length = 836
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/821 (42%), Positives = 537/821 (65%), Gaps = 37/821 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ + KP+KK A
Sbjct: 4 IKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGIHADKPYKKSA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+AVY+++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE R+
Sbjct: 64 RIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTESRM 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S LL D+++DT+++ N+D ++EP +LPAR P LL+NG +GIAVGMATNIPPH
Sbjct: 124 SKIS-MELLRDLNKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQ 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + A+ +PE T+ EL+E +PGPDFPTGGLI+G GI AY TGRG IT+R K
Sbjct: 183 LGEVIDGVLAISRDPEITIPELMEIIPGPDFPTGGLILGRSGIRKAYETGRGSITLRAKV 242
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E S K + +I+ E+PYQ NK+ LVEKIAEL +K ++GI+D+RDESDR GMRIVI
Sbjct: 243 VIEQ-KSNGKEV-IIVNELPYQVNKARLVEKIAELARDKKIEGITDLRDESDRKGMRIVI 300
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+++ A+ ++++N+LY+ TALQSSF N + +++G PK + LK+ L +L+ + V+ RR
Sbjct: 301 EVRKDANANVLLNNLYKQTALQSSFGINTLALVNGHPKVLNLKQCLVHYLEHQQVVIRRR 360
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + + R HI+EG+ + LDNLD VI ++R + + A L +F LSEKQA AIL
Sbjct: 361 TEFELRKAEARAHILEGLRIALDNLDAVITLIRGSQTTDIAREGLMTQFSLSEKQAQAIL 420
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K DE ++LM+ I +L+ +L + IL++I +E++E+K RF+ R +
Sbjct: 421 DMRLQRLTGLEREKIEDEFQSLMKLIAELKAILGDEEKILEIIREELLEIKERFNDKRRT 480
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--D 621
+ + ++D D+IP + ++++++ GY+KR+ +T+ Q RG G+ + + N D
Sbjct: 481 EIVTSGLENIEDEDLIPQENIVISLTHNGYIKRLPVSTYRAQRRG--GRGIQGMGTNEDD 538
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE + +IIP
Sbjct: 539 FVEHLITTSTHDTILFFTNKGKVYRSKGYEIPEFSRTAKGIPIINLLGIEKGEWVNAIIP 598
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF D L T G K+ L F++IRT G+IA+ L GDEL V+ + +
Sbjct: 599 VEEFVDDWSLFFTTKEGISKRSPLTSFANIRTNGLIALSLREGDELISVQLTDGTKHMII 658
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++NGM+I +RS+ R G + L GD++ M+++ EDS
Sbjct: 659 GTKNGMLIHFPETDVRSMGRTATGVKGISLDPGDEVVGMEVL-----------EEDSD-- 705
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
+L V+++G+GKR P + +R G+ + ++ L ++ VV
Sbjct: 706 --------VLIVTKNGYGKRTPAAEYRIQGRGGKGIKTCHVTEKNGNLVSMRVV------ 751
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+E ++L++ G + RI V IS R +GV L+ ++
Sbjct: 752 --TGEEDLMLITTGGVLIRIDVAGISKMGRNTQGVKLISMK 790
>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
Length = 879
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 551/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A + +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
Length = 880
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/858 (42%), Positives = 552/858 (64%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+VD ALI+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K ++E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKADIEA--DKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I ++R AP+ + A A L
Sbjct: 360 VVTRRTIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ ++ + R + + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVREIYGDERRTEI----TAAVHDIDMEELIAQ 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P +R A G P+V IL L +GERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+++R G+IA+ L D L V D + + S++G V+ + D +R++ R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L + D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TASGVRGMKLPEDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L+ + G++ K S + VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELAEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ + + G VK+ + F N++ G I + LR +D++ + ++ FS
Sbjct: 641 NEKFIFMATGDGTVKKTSLDQFANVRANGLIAVN---LRDDDSLIGVDITNGDSDIMLFS 697
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLVMLTMNG 698
G V K+ R A+G V+ + L + +++ S I+P +E GD ++ +T NG
Sbjct: 698 KSGKVVRFNEDKVRAMGRTASG---VRGMKLPEDDQVVSLIVPSNE--GD--ILTVTQNG 750
Query: 699 YIKKVSLNLFSSI--RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCD 754
Y K+ L + + T G+++I++ G + V+ D+++ M + G ++ +
Sbjct: 751 YGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMM-MITDAGTLVRTRVA 809
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + RNT+G +R D + + +
Sbjct: 810 EVSQVGRNTQGVTLIRTSDDENVVGL 835
>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
Length = 878
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/855 (42%), Positives = 551/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ +L++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A + +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|424033313|ref|ZP_17772727.1| DNA gyrase, A subunit [Vibrio cholerae HENC-01]
gi|408874895|gb|EKM14060.1| DNA gyrase, A subunit [Vibrio cholerae HENC-01]
Length = 879
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 551/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKMAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A S +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDERRTEITAA-SHDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V T + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|388602228|ref|ZP_10160624.1| DNA gyrase subunit A [Vibrio campbellii DS40M4]
Length = 880
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 550/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ + R + + A + +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P TR A G P+V IL L +GERIT+I+PV EF+ ++F+ M T +G +KK
Sbjct: 599 YRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V D + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 VEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
Length = 852
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/860 (42%), Positives = 539/860 (62%), Gaps = 38/860 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S I P + +E+ S+++Y+MSV++ RALPDVRDGLKPVHRR+L+AMH+LGL +P++
Sbjct: 6 SGNIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYR 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVGEV+GK+HPHGD AVYD+LVR+AQDFS+R+PL+ G GNFGS+D DPAAAMRYTE
Sbjct: 66 KSATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL ++ ML DI+ DTVNFVPNFDESQ+EP +LPAR P LL+NGA GIAVGMAT IP
Sbjct: 126 ARLTRIATEML-RDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D ALI +PE + L Y+ GPDFPTGG+++G GI +A RTGRG + VR
Sbjct: 185 PHNLGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVRVR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E + K R +++ E+PYQ NK+ L++KIAELV+++ + I+D+RDESDR GMR
Sbjct: 245 AKAHTEQI--KGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N+L++ T +Q SF N+V ++DG PK + KE L+ ++ + VV
Sbjct: 303 IVIELKREAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVV 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R +L + + R HI+EG+++ L NLD V+ +R + + TA L F+LSE+QA
Sbjct: 363 TRRTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKRFRLSERQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILD+ L+RLT LER+K + + L+E+I LE +L+ + +I +E++E+K ++
Sbjct: 423 AILDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADESKVYGIIREELLEIKAAYADE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + + + D+I +EM+++IS +GY+K + +F Q RG +G + +L+
Sbjct: 483 RRTAITAQEGAEFEVEDLIAEEEMVISISHEGYLKSVPIGSFRKQGRGGVGVAGMELKEG 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H ++L+F++RG VY + +++P R A G + +L L+ GERI ++I
Sbjct: 543 DYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAAKGRHVANLLPLAPGERIAAVI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSS-IRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+F ++L+ T G +KK +++ ++ GIIAI+L GDEL VR +++D V
Sbjct: 603 STRDFDEAEYLLFATRRGMVKKTPFRDYNTPLKNEGIIAIKLAGGDELIAVRHASDEDEV 662
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+++G + +R + R T G + LK D + SMD++ D
Sbjct: 663 VFVTRDGKGLRFRQGDVRPMGRATAGVKGITLKGDDALLSMDVV------------SDEA 710
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSL 858
++ L V+E G GKR +S FR G+I K + E ++A V VV L
Sbjct: 711 AD--------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVNGERGKIAGVQVVRPGL 762
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E +V+VS GT RI + Q R A+GV +M L + + + + + E
Sbjct: 763 HE-------LVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKVVSSRGE 815
Query: 919 TDLFLPSTSDKLATESGVSE 938
P D+LA + G++E
Sbjct: 816 -----PGEPDELALD-GITE 829
>gi|379009897|ref|YP_005267709.1| DNA gyrase subunit A [Acetobacterium woodii DSM 1030]
gi|375300686|gb|AFA46820.1| DNA gyrase subunit A [Acetobacterium woodii DSM 1030]
Length = 832
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/829 (43%), Positives = 538/829 (64%), Gaps = 33/829 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + EEM SYI Y+MSV++GRALPDVRDGLKPVHRRI++AM +LGL+ K F+K
Sbjct: 9 RIKSINIEEEMKTSYIDYAMSVIIGRALPDVRDGLKPVHRRIIYAMSQLGLTPEKTFRKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD++VRMAQ++S+RY ++ G GNFGS+D D AAAMRYTE +
Sbjct: 69 ARIVGDVLGKYHPHGDSSVYDAMVRMAQEWSIRYLIVNGQGNFGSVDGDSAAAMRYTEAK 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ A LL DI+++TV+FVPNFDES+ EPS+LP++ P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 MGKIA-AELLRDINKETVDFVPNFDESETEPSVLPSKYPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D A I + + T+ EL++++ GPDFPT G+++G GI AYRTGRGRI VRGK
Sbjct: 188 NLGEIIDGTIAFIDDQDITIDELMKHIKGPDFPTAGIVLGKSGIKSAYRTGRGRIKVRGK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
V+++ +K + ++I EIPY NKS LVEKIAELV+ K ++GISD+RDESD + GM I
Sbjct: 248 --VDIVTTKKGKKQIVITEIPYMVNKSKLVEKIAELVKEKKIEGISDLRDESDLKKGMSI 305
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
+I+LKR A+ +I++N LY+ T LQ +F M+ +++ +PK + LKE+L +++ + ++
Sbjct: 306 IIDLKRDANETIILNQLYKHTQLQETFGVIMLALVNNEPKVLNLKEILFHYIEHQKEIIT 365
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR F L + K R HI+EG+ + LD++D VI+++R A A L + F LSE QA A
Sbjct: 366 RRTIFDLKKAKARAHILEGLKIALDHIDEVIKLIRAAADGKVAKEQLIERFDLSEIQAQA 425
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LER+K +E K LM I +LE +L++ + +L +I++E++E+K ++ R
Sbjct: 426 ILDMRLQRLTGLEREKIEEEYKELMVTIAELEAILANGQLVLNIIKEELLEIKEKYGDKR 485
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ D D + D+I +E+++ ++ GYVKR+ + + Q RG G + R ND
Sbjct: 486 RTSF-DIDVEDFEIEDLIEEEEVVITMTHIGYVKRITADNYRSQKRGGKGITALSTREND 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ H ++++F++ G VY +A++IPE R A GT +V +L L DGE+I ++IP
Sbjct: 545 FVEHLFTTTTHHYLMFFTNLGKVYRLKAFEIPEGGRTARGTAIVNLLPLEDGEQIATMIP 604
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V EF D++L+M T G IKK L + + R GIIAI L DEL VR D+ + M
Sbjct: 605 VKEFTADKYLIMATKQGIIKKTDLTEYDTSRKNGIIAINLREDDELINVRLVEQDEEIVM 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+Q G I + + +R +SR + G + L++ D + MDI+ L
Sbjct: 665 GTQCGYAIRFNSEEVRPISRTSIGVRGIDLREDDVVVGMDIVKEEL-------------- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
++L VSE+G+GK +R G+ YK + + F V ++ D
Sbjct: 711 -------FVLCVSENGYGKLSASDLYRPQKRGGKGVQTYKVTKKTGELVGFCV---ISRD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
GE +++++ G V +++ DI+ R +GV LM+L+ I + S
Sbjct: 761 GE----IMMINNQGVVIKLEGNDITAVGRNTQGVRLMKLKSDESIATIS 805
>gi|403385779|ref|ZP_10927836.1| DNA gyrase subunit A [Kurthia sp. JC30]
Length = 822
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 532/835 (63%), Gaps = 33/835 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + + + +++ Y+MSV++ RALPDVRDGLKPV RRIL+ M ELG +S KP+KK AR+V
Sbjct: 12 VNITKTIKTAFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMQELGSASDKPYKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+++Y+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRMSKI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S ML DI+++T+++ N+D ++KEP +LPAR P LL+NGASGIAVGMATNIPPH LGE
Sbjct: 132 SMEML-RDINKNTIDYKDNYDGNEKEPVVLPARYPNLLVNGASGIAVGMATNIPPHQLGE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+++ + A+ NP T +EL+E +PGPDFPTGG+I+G GI AY TGRG I VR K E+E
Sbjct: 191 VINGVLAVSENPAITTEELMEIIPGPDFPTGGIILGRSGIRQAYETGRGSIIVRAKVEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + R +++ E+PYQ NK+ L+EKIAELV +K ++GI+++RDESDR+GMRI I+++
Sbjct: 251 --QTSTGREVIVVSELPYQVNKAKLIEKIAELVRDKKIEGITNLRDESDRNGMRITIDVR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+ ++V+N+LY+ TA+QSSF N V ++ GQPK + LKE L +L+ + V+ RR F
Sbjct: 309 KDANANVVLNNLYKQTAMQSSFGINTVALVKGQPKTLSLKECLYHYLEHQKEVIRRRTEF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LD++D +I ++R + ++ A L +EFKLSE+QA AILDM
Sbjct: 369 ELKKAEARAHILEGLRIALDHIDAIIALIRGSQTSDAAKQGLMEEFKLSERQAQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER K E + L I KL +L I+ +I E+ E++ RF+ R + +
Sbjct: 429 LQRLTGLERDKIEAEYQELQALIAKLRGILGDEAQIIDIIHTELNEIRERFNDARRTEIT 488
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
+G ++D D+IP + +L ++ GY+KR+ NT+ Q RG G +D +
Sbjct: 489 AGGAGMIEDEDLIPRENSVLTLTHNGYIKRLPANTYRSQRRGGRGVQGMNTHEDDFVEHL 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ HD +L+F+ +G + A+ Y+IPE R A G P+V +L++ E++T++I V +
Sbjct: 549 LYTSTHDTILFFTSKGKTFKAKGYEIPEYGRTAKGLPIVNLLNVDKDEKVTAMIRVPSYD 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ + + T G K+ SL F++IRT G+IAI L DEL VR V + ++NG
Sbjct: 609 EEAYFIFTTRTGVTKRTSLAQFANIRTNGLIAISLREDDELISVRLTDGKKEVVIGTRNG 668
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
M++ + + IR + R G +RLKD D + M+I+
Sbjct: 669 MLVRFNEEDIRPMGRTASGVRGIRLKDDDYVVGMEIL---------------------EP 707
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESD 865
G +L V+ +G+GKR P +R VG+ + + ++ ++AV V GE D
Sbjct: 708 GQEVLVVTANGYGKRTPEEEYRLQTRGGVGIKTIQITDKNGPMSAVKTV------TGEED 761
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++L++ +G + R+ V DIS+ R +GV L+RL + + + + PE D
Sbjct: 762 --IMLITDNGMLIRMDVGDISVIGRSTQGVRLIRLTDGEHVATVAKVEKEAPEED 814
>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 806
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/831 (42%), Positives = 537/831 (64%), Gaps = 37/831 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++ V L E+M SY+ YSMSV++ RALPDV+DGLKPVHRRI++ M LGL P++K A
Sbjct: 9 VIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGPYRKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GKFHPHGD+++YD+ VR+AQ+F+ RYPL+ G GNFG+ID D AAAMRYTE R+
Sbjct: 69 RLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRYTELRM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L++ ML DI++DTV+F PNFDE + EP +LP+R P LL+NG++GIAVGMATN+PPHN
Sbjct: 129 TKLTQEML-RDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNMPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+++ + I N E T+ EL+ + GPDFPTG IMG GI +AY+TGRG+I VR
Sbjct: 188 LTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQVRAVA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + K+KR ++++EIPYQ NKS L+ KIAELV+NK +DGIS IRDES R G+RI I
Sbjct: 248 EIE--EEKNKRR-IVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIRIAI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
+LKR A+P++V+N LY+ T +Q++F + +++G PK + LKE++ ++D + +VV RR
Sbjct: 305 DLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + K R HIVEG+ + LDN+DR+I IVR + ++ A +EF L+E Q AIL
Sbjct: 365 TKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEIQGQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM +RRLT LER+K +E K L+ I + E+L + + ++ +I+ E+IE++++F R +
Sbjct: 425 DMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFGDLRRT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+++ A +G++D DII +++++ +++ GY+KRM T+ Q RG G S R D +
Sbjct: 485 VIKSA-AGEIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTREEDFV 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+D + HD +L+F++ G Y +AY+IPE +R + GT ++ IL+LS E++ SIIPV
Sbjct: 544 NDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPVR 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E+ + +VM T +G IK++S +IR +GI A+ L GD + R T +D + + +
Sbjct: 604 EYDPNLNIVMATKDGIIKRISFEEIKNIRKSGINAMTLRDGDSIIGTRLTTGEDELILVT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM I D +R R + G A+ L D++ D++
Sbjct: 664 KKGMSIRFKEDEVRLTGRTSMGVKAIELNKDDEVVGFDVV-------------------- 703
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAED 861
S+ +LL +S++G GK P+ +R G+I YK + D ++A +
Sbjct: 704 -SADKYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKVKDKTGDLVSAKII-------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ ++++++++ G + RI+ IS+ R GV LM ++ S + A I
Sbjct: 755 -DKNDEIMMITSEGIIIRIETEGISVMGRSTSGVKLMNIKDSEVVAVAKYI 804
>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
Length = 963
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/852 (44%), Positives = 529/852 (62%), Gaps = 26/852 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RIV +ELH E + SY++Y+MSV++GRALPDVRDGLKPVHRRIL+AMHELGL S+KPFKKC
Sbjct: 108 RIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKC 167
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGKFHPHGD +VYD+LVRMAQDFS+ L+ GHGNFGS+DADP AAMRYTECR
Sbjct: 168 ARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTECR 227
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L+ +EAMLLADI D V+F FD SQ EP++LPARLP LL+NG++GIAVGMAT+IPPH
Sbjct: 228 LKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIPPH 287
Query: 263 NLGELVDVLCALIHNPE-ATLQELLEYMPGPDFPTGGLIMGNL-GILDAYRTGRGRITVR 320
NL E+ + L +PE TL++LLE MP PDFPTGG+I+ G + YRTG+G + +R
Sbjct: 288 NLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVNLR 347
Query: 321 GKTEVELLDSKSK----RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
G VE + + R V+I IPYQTNK+ L E+IA+LV ++T++G+SD+RDESDR
Sbjct: 348 GAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDESDR 407
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
GMR+V+E++RGAD + V++ LY T LQ+ S N+VG++ +PK + L E+++ FL FR
Sbjct: 408 DGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFLAFR 467
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE-FKLS 495
C VERRAR +L + R H+VEG + D V+ +R A TA AAL+++ F LS
Sbjct: 468 CDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPFWLS 527
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
EKQA+A+L M LRRLT LE K E L ++ L LL R ++ + +E EL++
Sbjct: 528 EKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAKELRD 587
Query: 556 RFSTPRLSMLEDADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
F R + ++ +++ + N L+ ++ +GY+KR+ P F+ QNR T G+
Sbjct: 588 TFGVDRRTDIDTDAQIHAKKMNVTLDMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGR 647
Query: 613 SVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSD 672
++GK+R D ++ C D VL+F+DRG V++ RA+ IP+ + +A GTP ++L L++
Sbjct: 648 NMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAE 707
Query: 673 GERITSIIPVSEFAGDQF-----LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL 727
GE IT+++PV L +T G IK+ + F IR G A+ L GD L
Sbjct: 708 GESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRL 767
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DG-----DKMASMD 781
K V D + + +G VI D +R+ R G AM K DG + + +
Sbjct: 768 KHVDIVKKGDGIIIGGIDGSVIHFDADSVRAQGRAAAGVKAMAFKPDGLDDTSEDDDTSE 827
Query: 782 IIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841
+PA + + + GP L FVS G GKR+ ++ F + G G
Sbjct: 828 ALPANASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMG 887
Query: 842 FSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQA-RYARGVILMRL 900
+LAA+ + G D + E V++ SQ G +NR V I Q+ R A+GV +M+L
Sbjct: 888 LMKGSKLAALCLTGL----DSDEHEHVIIGSQGGVMNRYDVASIRPQSGRAAKGVNVMKL 943
Query: 901 ELSGKIQSASLI 912
++ +L+
Sbjct: 944 SDGDTVRDITLL 955
>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|336065251|ref|YP_004560109.1| DNA gyrase subunit A [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|334295197|dbj|BAK31068.1| DNA gyrase, A subunit [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 835
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/833 (42%), Positives = 539/833 (64%), Gaps = 43/833 (5%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
+ EEM S+++Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+KK AR+VGE
Sbjct: 16 ISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGE 75
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
V+GK+HPHGD AVYDS+VRMAQ+FS RY LI GHGNFGSID D AAAMRYTE R+ +S
Sbjct: 76 VIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAAAMRYTEARMSKIS- 134
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
L+ DI+++TV+F+ N+D ++EP +LP+R P +L+NG +GIAVGMATNIPPHNLGE++
Sbjct: 135 MELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGMATNIPPHNLGEVI 194
Query: 269 DVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
D ALI NP+ T++EL+E Y+ GPDFPTG L++G GI A+ TGRG + +R K ++E
Sbjct: 195 DATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETGRGSVVMRAKVDIEE 254
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
+ + R +II EIPYQ NK+ LVEKIA LV +K +DGI+D+RDES+R G+RIV+EL+R
Sbjct: 255 MKNGKPR--IIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESNREGIRIVVELRR 312
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
+V+N LYRLTALQSSF NM+ +++G+P+ + L +VL + D + +V RR +F+
Sbjct: 313 EVQAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDHQIEIVTRRTQFE 372
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + ++R HI++G+M+ LD++D VI I+R + + A L + F L+E Q+ A+LDM L
Sbjct: 373 LKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNEAFDLTEIQSKAVLDMQL 432
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RRLT L+R K +E L I+ L+++L++ +L +I+ E+IE+K +F R S + +
Sbjct: 433 RRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIKTKFGDDRRSEIVE 492
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV--NDAMSD 625
AD LD+ D+IP +++++ ++ GY+KR ++FN QNRG GK V + D +
Sbjct: 493 ADIDMLDE-DLIPVEDIVVTMTMNGYIKRTTVDSFNTQNRG--GKGVRGISTYDEDTVDQ 549
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
FI HD++L F++ G VY R + +P +R + G P+V +L+L++GE + +++ V++
Sbjct: 550 FIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNLLNLTEGETVKTLVKVAKD 609
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ +T G +K+V + F SIR G IAI L DEL VR D+ + + N
Sbjct: 610 DESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDELVGVRMTNGDNEIIIGGSN 669
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G + + +RS+ R G + + +G +++ A ++
Sbjct: 670 GKAVRFDENEVRSMGRTASGVIGFNVDEG------EVVGIATDRE--------------- 708
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGES 864
G ++L V+E G+GKR ++ +R+ G+ + ++ L ++ V
Sbjct: 709 -GQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVN--------G 759
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DE+ +++S GTV R ++ +I I Y R I +RL G+ S S +++ +P
Sbjct: 760 DEEALIISNEGTVIRTEISNIGI---YGRSTIGVRLINVGETDSVSQVAILQP 809
>gi|347751699|ref|YP_004859264.1| DNA gyrase subunit A [Bacillus coagulans 36D1]
gi|347584217|gb|AEP00484.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
Length = 824
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/820 (43%), Positives = 542/820 (66%), Gaps = 37/820 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IV V L +EM S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AMH+LG++ K +KK A
Sbjct: 9 IVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D DPAAAMRYTE R+
Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTEARM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S LL DI++DT++F N+D S+KEP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 SKIS-LELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + AL +P+ T+QEL+EY+PGPDFPT GLI+G GI AY TGRG IT+R +
Sbjct: 188 LGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSITLRARV 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + +I+ E+PYQ NK+ L+E+IAELV K +DGI+D+RDESDR+GMR+VI
Sbjct: 248 EIE--QRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E++R A+ ++++N+LY+ TA+Q++F N++ ++ GQPK + LK+ L+ +LD + V+ RR
Sbjct: 306 EVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVIRRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + + R HI+EG+ + LD++D +I+++R + + A L ++F LSEKQA AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFSLSEKQAQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E + L++ I +L+ +L+ + +L++I +E++E+K RF+ R +
Sbjct: 426 DMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEIKERFNDERRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--D 621
+ A Q++D D+IP + + + ++ GY+KR+ +T+ Q RG G+ V + N D
Sbjct: 486 EIIAASVDQIEDEDLIPQESIAITLTHNGYIKRLPISTYRSQKRG--GRGVQGMGTNEDD 543
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + HD +L+F+++G VY + Y+IPE R A G P+V +L + E I ++I
Sbjct: 544 FVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGRTAKGIPIVNLLEIDKDEWINTMIR 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F D FL T G K+ + F++IRT G+IAI L DEL V+ + +
Sbjct: 604 VEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDELISVKLTDGHKDIII 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++NGM+I +RS+ R+ G + L D++ M+I LE +
Sbjct: 664 GTKNGMLIRFPETDVRSMGRSATGVKGITLSGDDEVVGMEI--------LEENDD----- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAE 860
+L V+++G+GKR S +R GL ++++ L AV V
Sbjct: 711 --------VLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLVAVKTV------ 756
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D ++L++ G + R+ V DIS+ R GV L+RL
Sbjct: 757 TGEED--IMLITAGGVLIRMAVGDISVLGRNTMGVKLIRL 794
>gi|148262090|ref|YP_001228796.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
Length = 832
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/829 (44%), Positives = 525/829 (63%), Gaps = 28/829 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR L+AM+++G KP+KK AR
Sbjct: 8 VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD+LVRMAQDFSLRYPL+ G GNFGSID D AAMRYTE R+
Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMY 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLAD+D++TV PN+D+S +EP +LPA+ P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 QLAHE-LLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D + A+I NP T +EL+E +PGPDFPT G I G GI+ AY TGRG I +R +
Sbjct: 187 SEVIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAM 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E K++R +++ EIPYQ NK+ LVEKIAELV K ++GISD+RDESDR GMRIVIE
Sbjct: 247 IET-HKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P I++N LY+ T +QSSF M+ I++ +P+ + L+E + F+D R +V RR
Sbjct: 306 LKKDENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRT 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F L + + R HI+EG+ + LDNLD VI +++ + S + A L F LSE QA AILD
Sbjct: 366 IFDLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSRFGLSEIQAQAILD 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L RLT LER K V E +++ I +L+E+L+S IL +I E+ ELK++F R +
Sbjct: 426 MRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEILNIIVGELRELKDKFGDKRRTE 485
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ + + ++ D I ++M++ IS GY+KR + Q RG GK+ K + D +
Sbjct: 486 IV-SQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGMKTKEEDFVE 544
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+ + D++++F+D G VY + Y+IPE R G +V +L+LS E+IT+I+PV E
Sbjct: 545 QLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKAIVNLLNLSTNEKITAILPVKE 604
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D+F++M T NG +KK L +S R GIIA+ L GD+L V V +AS+
Sbjct: 605 FTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITVALTDGRQDVLLASK 664
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
NG I +R++ R +RG M L+D D + M+I+ + N
Sbjct: 665 NGKSIRFKESDVRTVGRVSRGVRGMTLEDDDVVIGMEIL---------------NENFTD 709
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
S+ L V+E+G GKR LS +R G+I K + + VV D E+
Sbjct: 710 ST---LFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERNGC----VVDIKQVTD-EN 761
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
D ++L++ G + R+ V SI R +GV LM E +I + + ++
Sbjct: 762 D--LMLITDQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARLA 808
>gi|410086891|ref|ZP_11283598.1| DNA gyrase subunit A [Morganella morganii SC01]
gi|409766725|gb|EKN50815.1| DNA gyrase subunit A [Morganella morganii SC01]
Length = 871
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/877 (42%), Positives = 549/877 (62%), Gaps = 71/877 (8%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG K +K
Sbjct: 5 AKEILPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMKELGNDWNKAYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD AVY+++VR+AQ FS+RY L+ G GNFGSID D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRYMLVDGQGNFGSIDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLADID++TV+FVPN+D ++ P ++P R+P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADIDKETVDFVPNYDGTEMIPDVMPTRIPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D A I + + +++ L+E++PGPDFPT +I G GILDAYRTGRG+I +R
Sbjct: 184 PHNLGEVIDGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGILDAYRTGRGKIHIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ EVE D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ GMR
Sbjct: 244 ARAEVET-DEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR A +V+N+LY LT +Q++F NMV + GQPK + LKE+L AF+ R VV
Sbjct: 303 IVIEVKRDAVGEVVLNNLYLLTQMQTTFGINMVALHQGQPKILNLKEILSAFVRHRREVV 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK----------- 489
RR ++L + +ER HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 363 TRRTIYELRKARERAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLLAQAWELGTVAA 422
Query: 490 ---------------DE--------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
DE + L+E QA AILD+ L++LT LE +K +DE + L+
Sbjct: 423 MLAGAGDDAARPEGLDEQFGIRDGLYHLTEVQAQAILDLRLQKLTGLEHEKLLDEYRELL 482
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
E I L +L S + ++++I +E++ +K +F+ R + + + ++ ++ D+I +++++
Sbjct: 483 ELIAGLLHILQSPERLMEVIREELVAVKEQFNDKRRTDITE-NTADINIEDLISQEDVVV 541
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK + Q RG GKS +++ D + +V HD +L FS++G +Y
Sbjct: 542 TLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSNKGKLYW 601
Query: 647 ARAYKIPECTRNAAGTPLVQILSL--SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
+ Y++PE +R A G P++ IL L ERIT+I+PV E+ +F+ M T +G +KK S
Sbjct: 602 LKVYQLPEASRGARGRPIINILPLDQEQNERITAILPVREYEEGKFVFMATASGTVKKTS 661
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R GIIA+ L GDEL V + V + S +G V+ + D +R++ R
Sbjct: 662 LQDFSRPRNAGIIAVNLNEGDELIGVDLTDGSNEVMLFSADGKVVRFAEDAVRAMGRTAT 721
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL D D + S+ IIP +G +L V+E+G+GKR
Sbjct: 722 GVRGIRLGDDDAVVSL-IIP------------------RGEG--EILTVTENGYGKRTAE 760
Query: 825 SSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+ + G+I K S + ++ VG +D+Q+++++ +GT+ R +V
Sbjct: 761 AEYPTKSRATQGVISIKVSERNGKVVGAIQVG--------ADDQIMMITDAGTLVRTRVS 812
Query: 884 DISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++SI R +GV L+R K+ L V EPE D
Sbjct: 813 EVSIVGRNTQGVTLIRTGEEEKV--VGLQRVAEPEED 847
>gi|346312116|ref|ZP_08854109.1| DNA gyrase [Collinsella tanakaei YIT 12063]
gi|345899036|gb|EGX68891.1| DNA gyrase [Collinsella tanakaei YIT 12063]
Length = 922
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/832 (43%), Positives = 527/832 (63%), Gaps = 38/832 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E EM S+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ +P KK A VG
Sbjct: 79 EFGREMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVG 138
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EV+GK+HPHGD AVYD++VR+AQ FS+R PLI GHGNFG+ID D AAAMRYTE RL A
Sbjct: 139 EVIGKYHPHGDFAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDSAAAMRYTESRL-AKP 197
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+ +DTV++ PN+DES EP +LPAR P LL+NG+SGIAVGMATNIPPHNL E+
Sbjct: 198 AMELLRDLQKDTVDWGPNYDESLAEPKVLPARFPNLLVNGSSGIAVGMATNIPPHNLSEV 257
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
++ C LI NP+AT +EL+ +PGPDFPTG LIMG GI AY TGRG ITVR K VE
Sbjct: 258 IEATCMLIDNPDATCEELMTVLPGPDFPTGALIMGTSGIRQAYETGRGSITVRAKAHVE- 316
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
+K+ R ++ EIPYQ NK L EKIA+LV K ++GISD+RDES + G+R+VIELK+
Sbjct: 317 -STKTGRSRLVFTEIPYQVNKGTLQEKIAQLVNEKRIEGISDMRDESTQKGIRLVIELKK 375
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
G P +V+N+LY+ T+LQ++F N + +++G PK + L+E+L ++D + VV RR RF
Sbjct: 376 GVIPQVVLNNLYKYTSLQNTFGVNNLALVNGVPKCLSLREILSHYIDHQVDVVTRRTRFD 435
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + + R HI+EG ++ LD++D VI I+R + +++ AS+ L + F S +Q AIL+M L
Sbjct: 436 LKKAQARAHILEGYLMALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKL 495
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RRLT LER K DE L I E+LL++ IL +I++E+ E+ +F R + +
Sbjct: 496 RRLTGLERDKIEDELAGLRRAIAYYEDLLANEHKILGVIKEEMREISKKFGDKRRTEITR 555
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
A+ LD D+I +++M++ I+ GYVKR+ T+ Q RG G + L+ +D +++
Sbjct: 556 AER-DLDVEDLIADEDMVVTITHTGYVKRIPVETYRSQKRGGKGVTGVNLKEDDVIAEMF 614
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+ H++VL+FS++G VY + +++P +R A GT +V +L +GE+I S+I EF G
Sbjct: 615 IASTHEYVLFFSNKGKVYRLKVHELPVGSRQARGTAIVNLLPFEEGEKIASVISCREFPG 674
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
+++L+ T NG +KK ++ + R GIIAI L GD L VR D V MA+ +G
Sbjct: 675 NEYLMFATANGMVKKTVMSAYDRSRRDGIIAINLKNGDRLLDVRRVREGDKVIMATTSGK 734
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807
I+ + D +R+ R+T G + +KDG ++ M+I SN G
Sbjct: 735 AIVFAEDQVRATGRDTSGVRGITMKDGAEVLGMEI-----------------SNGTGD-- 775
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLAEDGES 864
L ++E G+GKR P++ + + NR G Y D LAA+ VG
Sbjct: 776 --LFVITERGYGKRTPVADYPE--QNRGGQGVYTIQMTDHKGSLAAMKTVG--------P 823
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++ ++++ TV R+K D+S R +GV +M + ++ + + ++ +E
Sbjct: 824 QHELFIITEGATVIRVKTEDVSQTGRATQGVKMMSVIDGDRVTAVARMTSSE 875
>gi|340751289|ref|ZP_08688110.1| DNA gyrase, A subunit [Fusobacterium mortiferum ATCC 9817]
gi|229421602|gb|EEO36649.1| DNA gyrase, A subunit [Fusobacterium mortiferum ATCC 9817]
Length = 843
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/817 (43%), Positives = 550/817 (67%), Gaps = 38/817 (4%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
+ +EM SY+ YSMSV++ RALPDVRDG+KPVHRRILFAM+ELG+S KP+KK AR+VGE
Sbjct: 9 IEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKSARIVGE 68
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
VLGK+HPHGD+AVY ++VRMAQDF+ RYPLI GHGNFGSID D AAAMRYTE R+ +S
Sbjct: 69 VLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEARMAKISN 128
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
LL DID++T++F NFD+S EP++LPA+LP LLLNGA+GIAVGMATNIPPHNLGE+V
Sbjct: 129 E-LLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGEVV 187
Query: 269 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
D ALI NPE T +L+EY+ GPDFPTGG+I G+ GI DAY TGRG++ VRGK E+E L
Sbjct: 188 DGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGKIEIEEL 247
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
K+ ++ +II+EIPYQ NK+ L+EKIAELV++K + GISD+RDESDR G+R+VIELK+G
Sbjct: 248 --KNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIELKKG 305
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
+P +++N LY+ T LQS+F M+ +++ P+ + LK++++ ++ R V+ RR +F L
Sbjct: 306 EEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRTQFNL 365
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+ ++R HI++G + L+N+DR+I +VR A + A L +++ ++ QA AILDM L+
Sbjct: 366 DKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAILDMKLQ 425
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RLT LER K E + + + I +L E+L++ I ++++ E+ ELK+++ R +++E
Sbjct: 426 RLTGLERDKVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDDRRTVIE-K 484
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+ +++ D+I ++E++L + KGYVKRM+ + + Q RG G + +D + +
Sbjct: 485 ERKEINPEDLIKDEEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQNTVEDDFVENIES 544
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
D ++ F+++G VY+ + Y+IPE ++ + G + I++L E+I +II +F+ +
Sbjct: 545 AMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRGRLIGNIINLKTDEKIRAIIKTRDFSNE 604
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN--DDLVAMASQNG 746
++ +T +G +KK +L+ F +I ++G+ AI+L D++ +V + ++ + +A+Q G
Sbjct: 605 NEVIFVTKDGTVKKTNLSEFKNINSSGLKAIKLKENDDIIYVGLIEDIVNEQLLIATQAG 664
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I SC+ +R+ R+T G + L++GD + S A L KD+E +
Sbjct: 665 YSIRFSCEELRATGRDTMGVKGLTLREGDTVVS-----ALLIKDIENSS----------- 708
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPL-NRV--GLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
+L ++E+G+GKR + + PL +R+ G+I + SA+ +
Sbjct: 709 ---ILTITENGYGKRTKIDEY---PLQSRIGKGVINLRCSAKTGSVVSVLSVS------- 755
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+DE+++ ++ SG V RI V DI + R +GVI+M++
Sbjct: 756 TDEELMAITSSGVVIRIAVDDIVLYGRATQGVIIMKV 792
>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
Length = 839
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/836 (41%), Positives = 541/836 (64%), Gaps = 37/836 (4%)
Query: 81 SPR--IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+PR + + + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 4 TPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKA 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VGEV+GK+HPHGD AVYD++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S ++ DI++DT+++ N+D S++EP ++P+R P LL+NG+SGIAVGMATN
Sbjct: 124 TEARMSKIS-MEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH LGE++D L AL H+PE T+QEL++Y+PGPDFPT G+I+G GI AY +G+G IT
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K +E + + +I+ EIPYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+G
Sbjct: 243 MRAKVRIET--KANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+++ A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L +L+ +
Sbjct: 301 MRIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKV 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F+L + + R HI+EG+ + LD++D +I ++R + + A L + F LSEKQ
Sbjct: 361 VIRRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER K +E + L++ I +L+ +L+ + +L++I +E+ E+K RF+
Sbjct: 421 AQAILDMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFN 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + Q++D D+IP + ++L ++ GY+KR+ +T+ Q RG G+ + +
Sbjct: 481 DERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRG--GRGIQGMG 538
Query: 619 VN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
N D + + HD +L+F+++G + A+ Y+IPE +R A G P++ +L + GE +
Sbjct: 539 TNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGVDKGEWV 598
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
++I + EF D +L T G K+ ++ F++IRT G+IAI L DEL V+
Sbjct: 599 NAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIRTNGLIAINLRENDELISVKLTDGS 658
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +Q GM+I +RS+ R G + L D + M+I+ KD
Sbjct: 659 KDIIIGTQKGMLIRFPETDVRSMGRTATGVKGINLDSEDIVVGMEILE---EKD------ 709
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
+L V+E G GKR P +R GL + DR + V
Sbjct: 710 ------------DVLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNIT--DRNGELISVK- 754
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D ++L++ G + R+ V DISI R +GV L+RL+ + + + + +
Sbjct: 755 --AVTGEED--LMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806
>gi|257783821|ref|YP_003179038.1| DNA gyrase subunit A [Atopobium parvulum DSM 20469]
gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
Length = 901
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/820 (43%), Positives = 518/820 (63%), Gaps = 40/820 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P +L EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM E G++ +P KK A
Sbjct: 54 PTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSAWA 113
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEV+GK+HPHGD+A+YDS+VRM+QDFS+R PLI GHGNFGSID DP AAMRYTE RL
Sbjct: 114 VGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL-T 172
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
S +LA+++++TV+ PN+DES EP++LPAR P LL+NG+SGIAVGMATNIPPHNLG
Sbjct: 173 RSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNLG 232
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ D +C +I NPE T +EL+ +PGPDFPTGG+IMG GI DAY TGRG ITVR K V
Sbjct: 233 EVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVHV 292
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E + KS R +++ EIPYQ NK +L EKIA+ V K ++GISD+RDES+R GMRIVI+L
Sbjct: 293 EQV--KSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 350
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR A P +V+N+LY+ T LQS+F + ++DG P+ + L+E+L+ ++D + VV RR
Sbjct: 351 KRDAVPQVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTE 410
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F L + ++R HI+EG++ +DN+D ++ I+R + ++ A + + F L E Q +AIL M
Sbjct: 411 FDLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNERFGLDEIQGEAILQM 470
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT L R+ VDE L I E+LL+ + IL +I E+ E+ NR++ R + +
Sbjct: 471 RLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYADKRRTQI 530
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ D LD D+I ++M++ ++ GYVKR+ + Q RG G L+ ND + +
Sbjct: 531 SEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVEN 590
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSIIPVSE 684
V HD+VL+F++ G VY + +++P +R G+ ++ ++ +L++GE++ ++I +
Sbjct: 591 LFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGEKVKAVITTRD 650
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F D +L+ T G +KK +++ + R G+IAI L GDEL VR D V + S
Sbjct: 651 FPEDNYLMFATKQGMVKKTAMSEYDRTRKDGLIAINLKDGDELVNVRRVHPGDKVVLCSS 710
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+G IL RS+ R T G + LK M M+I +N G
Sbjct: 711 DGKAILFDEAEARSMGRGTSGVRGITLKGNATMLGMEI-----------------TNGNG 753
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG-YKFSAEDR---LAAVFVVGFSLAE 860
L ++E G+GKR +S + P+++ G G + + ++ L A VVG
Sbjct: 754 D----LFVITEKGYGKRTAISEY---PVHKRGGQGVFTITMTEKKGNLVACRVVG----- 801
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++++S+ G V R+K DIS R +GV +M L
Sbjct: 802 ---PQHEIMIMSEEGVVIRVKAGDISKLGRSTQGVKVMNL 838
>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
Length = 823
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/836 (41%), Positives = 534/836 (63%), Gaps = 39/836 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P + +EM +Y+ Y+MSV++ RALPD RDGLKPV RIL+ M ++G+ + +PFKKCAR+
Sbjct: 8 PRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGE+LGK HPHGD+AVYD+LVR+AQ +++RYPL+ G GNFGSID DP AAMRYTE RL
Sbjct: 68 VGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARLTP 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E ML ADI+++TV+F NFD +EP +LPAR+P LLLNGA+GIAVGMATNIPPHNL
Sbjct: 128 IAEEML-ADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLN 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ D + LI NP+AT+++L MPGPDFPT G+I+G GI++AY TGRG IT+R K +
Sbjct: 187 EVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAHI 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ +++ E+PYQ NK+ L E+IAEL ++ ++GI D+RDESDRSGMR+VI L
Sbjct: 247 E--EAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIIL 304
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERR 443
K+ A P V+N+LY+ T +Q++F NM+ +++G QP+ + LK +LQ ++D R V+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + + R HI+EG+ + +DNLD VI +R + S A L + F LSE QA+AIL
Sbjct: 365 TEFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMNGFALSEAQANAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M L RL LER++ +E + +++ I +LE++L++ + IL LI+Q++ +LK ++ PR +
Sbjct: 425 EMQLGRLAALERQRIEEEYREVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDPRRT 484
Query: 564 -MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
++ DAD G++ D D+IP+ +L+ ++++GYVKR P+ + Q RG G +R D
Sbjct: 485 RIIPDAD-GEVSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDV 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + D +L+F+DRG VY +A+++P+ +R A G PLV +++L GE++TS++ V
Sbjct: 544 VRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQVTSVLAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F ++L+M T+ G IK+ S+ +S +R+ G+IAI L GDEL WV + V +
Sbjct: 604 PDFEKAEYLIMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWVAMTQGHEDVLLT 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I + +R + R G + + L +GD++ SMD+
Sbjct: 664 TARGQTIRFRQEEVRPMGRPATGVIGIALAEGDRVVSMDL-------------------- 703
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL V+ +G+GKR L + G+I + D +A VV
Sbjct: 704 -ARENAALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDEVAVAHVV-------- 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ +++SG V R + IS+ R +GV ++ L + ++ + + V EP+
Sbjct: 755 HEHSLLTFITESGMVMRTEADGISMFGRNTQGVTIVNLAPNDRVAA---LCVEEPD 807
>gi|418325364|ref|ZP_12936571.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU071]
gi|365228613|gb|EHM69794.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU071]
Length = 893
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+RI
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRI 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|373494048|ref|ZP_09584654.1| DNA gyrase, A subunit [Eubacterium infirmum F0142]
gi|371969182|gb|EHO86633.1| DNA gyrase, A subunit [Eubacterium infirmum F0142]
Length = 831
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/842 (42%), Positives = 539/842 (64%), Gaps = 39/842 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ E++ EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+ M LG++ KP KK
Sbjct: 9 RLEQTEIYSEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYGMGHLGVTPDKPHKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+++YD++VR+AQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGEVMGKYHPHGDSSIYDAMVRLAQDFSTRYMLVDGHGNFGSVDGDSAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ + M L DI+++TV+F NFD +KEP +LP+R P LL+NG++GIAVGMAT+IPPH
Sbjct: 129 MTPFALEM-LRDIEKETVDFRDNFDGEEKEPVVLPSRFPNLLVNGSNGIAVGMATSIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D +I P+ ++EL++ + GPDFPTG I+G G+ +AYRTG G++ VR
Sbjct: 188 NLKEVIDATIRVIDEPDCDIEELIKIVKGPDFPTGAQILGKAGMREAYRTGTGKVKVRSC 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E D + ++I EIPY NK+ L+EK+A+LV+ K ++G+S IRDES+R G+RIV
Sbjct: 248 CEIEETDRGKSQ--IVITEIPYMVNKARLIEKMADLVKEKKIEGVSAIRDESNREGIRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELKR A+P I +N Y+ T LQ SFS M+ ++DG+P+ + LK L+ ++ F+ VV R
Sbjct: 306 VELKRDANPQITLNRFYKHTQLQDSFSMIMLALVDGKPEVLTLKRFLEEYVKFQKEVVTR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L++ + R HI+EG+ + LDN+D VI+ +RE+ SN A L + F LS+ QA AI
Sbjct: 366 RTKFDLAKAEARAHILEGLRIALDNIDAVIKTIRESYSN--AKENLMENFGLSDIQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RL LER+K +E LM++I + LL+ ++ +I+ E+ E++++F R
Sbjct: 424 LDMRLARLQGLEREKIENEYNELMKRIAYYKSLLADEVLLMGVIKDELTEIRDKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D G+ D+ D++ + + + + GY+KR+ +T+ Q RG G + R ND
Sbjct: 484 TKI-IRDEGEFDEEDLVEEENVTITFTHLGYIKRVPADTYKAQKRGGKGITGVTTRDNDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D ++ HD++++F++ G + +AY+IPE TR A GTP + L+L ERIT++IPV
Sbjct: 543 VKDLVMTSTHDNLMFFTNTGKAHKIKAYEIPEATRTARGTPAINFLNLLQRERITAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ D++L+ +T NG IKK +LN F + RTTG+IAI L DEL ++ T + + +
Sbjct: 603 KEFSDDKYLIAITKNGLIKKTALNEFDTKRTTGLIAINLKDEDELIAIKQSTGSNNIIIV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I S +R + R G A++L D++ SM+++ PE
Sbjct: 663 TRKGKCICFSEKDVRPMGRIASGVRAIKLDKDDEVVSMELVE----------PE------ 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY---KFSAEDRLAAVFVVGFSLA 859
L+ V+E+G GKR P+ ++ GL+ Y KFS L VV
Sbjct: 707 -----QQLMVVTENGFGKRTPVEEYKIQVRGGKGLLTYDKAKFSKTGALIGAMVV----- 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASLISVTEPE 918
ESDE +++++ G + RI+ ++SI R +GV +M++E KI + A I E E
Sbjct: 757 --DESDE-ILMINSDGIIIRIRASEVSILGRATQGVKIMKVEEGSKIVAIAKAIRDDEDE 813
Query: 919 TD 920
T+
Sbjct: 814 TE 815
>gi|374298376|ref|YP_005048567.1| DNA gyrase subunit A [Clostridium clariflavum DSM 19732]
gi|359827870|gb|AEV70643.1| DNA gyrase subunit A [Clostridium clariflavum DSM 19732]
Length = 841
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/826 (43%), Positives = 530/826 (64%), Gaps = 39/826 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM LG + K ++KCA
Sbjct: 12 IIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYAMFGLGFTPDKAYRKCA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VGEVLGK+HPHGD AVYDS+VRMAQDFSLRYPL+ GHGNFGSID DP AAMRYTE +L
Sbjct: 72 TTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYPLVDGHGNFGSIDGDPPAAMRYTEAKL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S M + DI++DTV+F PNFDE + EP +LP+R P LL+NG+SGIAVGMATNIPPHN
Sbjct: 132 AKISMEM-VRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D + A+I NP+ T+ +L++ + GPDFPTG I+G GI DAYRTG+G+I +R T
Sbjct: 191 LCEVIDGIVAVIDNPQTTIDDLIKIIKGPDFPTGATIVGKSGIKDAYRTGKGKIIMRAVT 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +R +++ E+PYQ NK+ L+EKIA+LV++K ++ ISD+RDESDR GMRIVI
Sbjct: 251 NIEQMTPNKQR--IVVTELPYQVNKARLIEKIADLVKDKRIESISDLRDESDRDGMRIVI 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-----QPKQMGLKEVLQAFLDFRCS 438
ELK+ A+ ++V+N L + T +Q +FS NM+ ++ +P+ + L++ + ++D +
Sbjct: 309 ELKKDANANVVLNQLLKFTQMQETFSVNMLALIQTPDKKFEPRVINLRQAIDYYIDHQKD 368
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + + R HI+EG+ + +DNL+ VIRI+R + + + A AL F SEKQ
Sbjct: 369 VIVRRTKFDLDKAEARAHILEGLKIAIDNLEEVIRIIRASKNEAEAKEALMGRFNFSEKQ 428
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+DM L RLT LER+K E + L+ +I +++L++ +L +I++E+ E+K ++
Sbjct: 429 AQAIVDMRLGRLTALEREKIDAEYEELLAKIKYYKDVLANEFMVLNIIKEELTEIKQKYG 488
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + +D G D D+I + ++ ++ GYVKR+ +T+ Q RG G R
Sbjct: 489 DERRTKII-SDEGDFDVEDLIEEENCVITLTHFGYVKRIPTDTYKSQRRGGKGIIGLSTR 547
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD++L+F+ +G VY +AY+IPE R+A GT +V +L L E+IT+
Sbjct: 548 EEDFVENLFTTSTHDYILFFTSKGKVYRLKAYEIPEAGRHAKGTAIVNLLQLEPDEKITT 607
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ E+ +LV+ T NG +KK L + IR G+ A+ L DEL V+
Sbjct: 608 VIPLKEYKEGLYLVLATKNGIVKKTDLMEYDHIRKGGLTAVTLKENDELIDVKLTDGTKD 667
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NGM I + +R L R + G ++L D D++ M + +E T
Sbjct: 668 IILVTRNGMSIRFNEQDVRPLGRVSMGVRGIKLDDDDEVVGMGVY-------IEDTS--- 717
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
LL V+E G GKR L ++ G++ Y+ + + ++A + +V
Sbjct: 718 -----------LLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTEKTGKIAGMKLV--- 763
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
E D+ V+L+S G++ RI V DISI R +GV LMRL+ S
Sbjct: 764 ----NEKDD-VMLISSDGSIIRINVSDISILGRATQGVTLMRLDES 804
>gi|420211482|ref|ZP_14716841.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM001]
gi|394280817|gb|EJE25088.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM001]
Length = 893
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|427406652|ref|ZP_18896857.1| DNA gyrase, A subunit [Selenomonas sp. F0473]
gi|425708082|gb|EKU71123.1| DNA gyrase, A subunit [Selenomonas sp. F0473]
Length = 816
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/839 (42%), Positives = 547/839 (65%), Gaps = 33/839 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+VPV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM G++S KP+KK
Sbjct: 10 RVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYKKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEVLGK+HPHGD++VYD++VRMAQDFS+RY L GHGNFGS+D D AAAMRYTE R
Sbjct: 70 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +SE ++L DID++TV+F N+D S+KEP++LPA+ P LL+NG +GIAVGMATNIPPH
Sbjct: 130 MSKISE-LMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ LI NP+ T++EL+ + GPDFPT GLI+G I AY TGRG I +R +
Sbjct: 189 NMVEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRAR 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + + R +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDRSGMRIV
Sbjct: 249 AHIETMSNGKPR--IIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R + P++++N LY+ T LQ SF M+ ++DGQP M L+ VL ++ + +V+ R
Sbjct: 307 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L++ + R HI+EG+ + LD+LD VI +RE+ + A AL ++F L+EKQA AI
Sbjct: 367 RTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEDFNLTEKQAQAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K E + ++ I + + +L+ R +L +I+ E+IE+++++ R
Sbjct: 427 LDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRSKVLAIIKDELIEVRDKYGDERR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D+ ++D D+I +++++ ++ Y+KR+ +T+ Q RG +G + D
Sbjct: 487 TEIT-FDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVRGMGTKETDI 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+SD ++ H +L+F++RG + +AY+IPE R A GT +V +L++ ERIT++I V
Sbjct: 546 VSDLLITTTHHAILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQV 605
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF D+FL + T G +KK L F++IR +G+ A+ L DEL V+ ++ + +
Sbjct: 606 REFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTDGENRIMLG 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +RS+ R TRG + L +GD++ +MD++
Sbjct: 666 TRLGKAITFPESGVRSMGRVTRGVRGITLAEGDEVVAMDVL------------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S +L V+E G+GKR +R GLI K + + VVG +
Sbjct: 707 --RSDSEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEK----TGPVVGIRVV--- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT-EPETD 920
++++L++ G V R V +IS+ +R +GV LM + + ++ S + +++T +P T+
Sbjct: 758 RGSQELMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMTVDPPTE 816
>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 809
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/832 (42%), Positives = 541/832 (65%), Gaps = 38/832 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+++++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M L L+S P++K A
Sbjct: 11 ILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLASNGPYRKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+++Y++ VR+AQDF+ RY L+ G GNFG+ID D AAAMRYTE R+
Sbjct: 71 RLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+E ML DI+++TV+FVPNFDE++KEP++LPAR P LL+NG+SGIAVGMATN+ PHN
Sbjct: 131 TKLAEEML-RDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMATNMAPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E +D + A I N E ++ EL + + GPDFPTG IMG GI +AY TGRG+ITVR
Sbjct: 190 MNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGRGKITVRAVA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E++ K+ R ++I E+PYQ NKS L+ KIAEL +NK +DGIS+I D S+R G+ I++
Sbjct: 250 EIKSF--KNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRKGINIIV 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+ +V+N LY+ T +Q++F + +++G+P+ + LK++++ ++D + VV RR
Sbjct: 308 ELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQVEVVTRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R HIVEG+ + LDN+DR+I+IVR + + A +EFKL+E+Q+ AIL
Sbjct: 368 TKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFKLTEEQSQAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM +RRLT LER + E + L I +E+L + ++ LI++E++E+K ++ R +
Sbjct: 428 DMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKEKYGDLRRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ A + ++ DII +++++ +++ GY+KRM T+ Q RG G S G +R D +
Sbjct: 488 VISHART-DIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVSSGNMRDKDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD +L+F+ G V+ +AY+IPE +R + GT ++ +L L + ER+TSIIPV
Sbjct: 547 KELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVK 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E+ D +M+T G IK+ + +IR +GIIAI+L GD+L V +D+ V + +
Sbjct: 607 EYDPDLNFLMVTEKGLIKRTPFKDYKNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVT 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G+ I + + +R RN+ G +M L D + S D++
Sbjct: 667 KKGLSIRFNEEQVRKSGRNSMGVKSMDLDKDDIVVSSDLV-------------------- 706
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAED-RLAAVFVVGFSLAE 860
+LL +SE+G+GK + +R P NR GL+ YK + + +A+ VV
Sbjct: 707 -VDDKYLLVISENGYGKLTEIDKYR--PQNRGGKGLLTYKITNKTGDVASAAVV------ 757
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E ++ V++++ SG + RI DIS+Q R GV LM L + + A+ I
Sbjct: 758 --EKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNLTDAKVVAVANYI 807
>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
Length = 809
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/835 (42%), Positives = 537/835 (64%), Gaps = 33/835 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAIEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N A L ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R +++ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 ATIE--QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + +ER HI+EG+ LD++D +I I+R + + + A L +F+ +E QA AI
Sbjct: 364 RTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISKFQFTEVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIVQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +RS+ R +G M L+DGD + M+
Sbjct: 663 SSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + D+ + +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGS--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG-KIQSASLISVTE 916
D+++++ S G R++V + +Q R +GV LMR++ K+ S + I V E
Sbjct: 757 --DDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809
>gi|444374083|ref|ZP_21173390.1| DNA gyrase subunit A [Helicobacter pylori A45]
gi|443621307|gb|ELT81746.1| DNA gyrase subunit A [Helicobacter pylori A45]
Length = 826
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/821 (43%), Positives = 537/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRMK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTFLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L+ +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLKGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDIEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|418629085|ref|ZP_13191600.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU127]
gi|374834818|gb|EHR98453.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU127]
Length = 893
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEILVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|416127532|ref|ZP_11596940.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
Length = 893
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDNVVDLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|420192454|ref|ZP_14698313.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM023]
gi|394261184|gb|EJE05984.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM023]
Length = 893
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|418615315|ref|ZP_13178260.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU118]
gi|374817489|gb|EHR81669.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU118]
Length = 893
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIYYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|433461797|ref|ZP_20419399.1| DNA gyrase subunit A [Halobacillus sp. BAB-2008]
gi|432189692|gb|ELK46775.1| DNA gyrase subunit A [Halobacillus sp. BAB-2008]
Length = 849
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/820 (41%), Positives = 540/820 (65%), Gaps = 32/820 (3%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
PR+ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+ + K +KK
Sbjct: 8 PRVQEINISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMHDLGMHADKAYKK 67
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEV+GK+HPHGD+AVYD++VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 68 SARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEA 127
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ +S +L DI++DT+++ N+D +++EP++LP++ P LL+NG +GIAVGMATNIPP
Sbjct: 128 RMSKIS-MEILRDINKDTIDYNDNYDGTEREPAVLPSKFPNLLVNGGAGIAVGMATNIPP 186
Query: 262 HNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
H LGE++D + AL + + T+QEL+E ++ GPDFPT G I+G GI AY TG+G ITVR
Sbjct: 187 HQLGEVIDAVLALSKDEDITIQELMENHIYGPDFPTAGKILGLSGIRKAYETGKGSITVR 246
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K ++E + + + +++ E+PYQ NK+ LVEKIA+L +K +DGI+D+RDESDR+GMR
Sbjct: 247 AKVDIE--EQANGKTRLLVTELPYQVNKARLVEKIADLARDKKIDGITDLRDESDRNGMR 304
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIEL+R +P++++N+LY++TALQS+F N++ ++DG PK + LK+ L+ +L+ + V+
Sbjct: 305 VVIELRRDVNPNVLLNNLYKMTALQSTFGINILALVDGHPKVLNLKQCLEHYLEHQKVVI 364
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + + R HI+ G+ + LD+LD VI ++RE+ + A L + F LSEKQA
Sbjct: 365 RRRTEFELKKAEARAHILAGLRIALDHLDEVIALIRESQTTDIARNGLMERFGLSEKQAQ 424
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + L++ I +L+ +L+ + +L++I E++++K R++
Sbjct: 425 AILDMRLQRLTGLEREKIEEEYQELIKHIAELKAILADDEKVLEIIRGELLDIKERYNDE 484
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+IP + +++ ++ +GYVKR+ T+ Q RG G
Sbjct: 485 RRTEIVLGGTDFIEDEDLIPEETVIVTLTHQGYVKRLPATTYRSQRRGGRGVQGMGTHEE 544
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H+ +L+FS++G VY A+ Y++PE +R A G P++ +L++ E I ++I
Sbjct: 545 DFVEHLLSTSTHNTLLFFSNKGKVYKAKGYEVPEFSRTAKGIPIINMLNIEQDEWINAVI 604
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V +F D +LV T NG K+ +L+ F++IR G+IA+ L DEL VR +
Sbjct: 605 AVEDFVDDWYLVFTTRNGITKRTTLSQFANIRKGGLIALGLREDDELISVRLTDGSKDIM 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++NG +I + D IR + R G + L+D D + SM+I+ +L
Sbjct: 665 IGTRNGYLIRFNEDQIRPMGRTAAGVKGISLRDDDHVVSMEILDDSLQ------------ 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+ +G+GKR P S +R G+I + D+ V + A
Sbjct: 713 ---------VLTVTTNGYGKRTPASDYRITNRGGKGIITCNLT--DKNGHVVS---TKAV 758
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+GE D +++++ SG + R+ + IS R +GV L+RL
Sbjct: 759 NGEED--IMIITASGVLIRMPMESISETGRNTQGVRLIRL 796
>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
gi|418634923|ref|ZP_13197314.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU129]
gi|420190649|ref|ZP_14696590.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM037]
gi|420205713|ref|ZP_14711236.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM015]
gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
gi|374836465|gb|EHS00053.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU129]
gi|394258582|gb|EJE03462.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM037]
gi|394269398|gb|EJE13932.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM015]
Length = 893
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|335427802|ref|ZP_08554722.1| DNA gyrase subunit A [Haloplasma contractile SSD-17B]
gi|335429241|ref|ZP_08556143.1| DNA gyrase subunit A [Haloplasma contractile SSD-17B]
gi|334890321|gb|EGM28593.1| DNA gyrase subunit A [Haloplasma contractile SSD-17B]
gi|334893728|gb|EGM31937.1| DNA gyrase subunit A [Haloplasma contractile SSD-17B]
Length = 846
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/853 (41%), Positives = 541/853 (63%), Gaps = 31/853 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL++M+E G+ S KP+KK
Sbjct: 8 RIKELNISKEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNESGMHSDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++YD++VRMAQ FS RY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRYMLVDGHGNFGSIDGDGAAAMRYTESR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS ML DI+++T+++ N+D S++EP +LP+R P LL+NG +GIAVGMATNIPPH
Sbjct: 128 MSKLSMEML-RDINKNTIDYRDNYDGSEREPQVLPSRFPNLLVNGTTGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+GE++D + AL H+PE ++ EL+EY+ GPDFPTG I+G GI AY GRG I +R K
Sbjct: 187 NIGEVIDGVLALSHDPELSVSELMEYIKGPDFPTGANILGLSGIRRAYEYGRGSIVMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+ ++ ++ + +II EIPYQ NKS L+E+IA+L + K ++GI+D+RDES+R+G+R+V
Sbjct: 247 HEI--VEHRNGKSTIIITEIPYQVNKSRLIERIADLAKEKKIEGITDLRDESNRNGIRVV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL++ + +++N LY+ TALQ++FS NM+ ++D QPK + LKE L +L+ + ++ R
Sbjct: 305 IELRKDVNAEVMLNHLYKQTALQTTFSVNMLALVDNQPKVLNLKEALYHYLEHQKVIIVR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + + R HI+EG + LDN+DR+I IVR + + A L DEF L+E+Q+ AI
Sbjct: 365 RTRYDLEKAESRAHILEGYRIALDNIDRIIAIVRGSQTEQEAITNLIDEFALTERQSKAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM LRRLT LER K E + L+EQI +E+L S + ++QL+ +E+ ++K RF R
Sbjct: 425 VDMRLRRLTGLERDKIEKEYQGLLEQIADYKEILGSEERVVQLVREELTDVKERFDDGRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ ++D D+IP +++++ ++ +GYVKR+ +T+ QNRG +G D
Sbjct: 485 TEIVPSEEFDIEDEDLIPQEDIIITVTSRGYVKRLPVDTYKSQNRGGVGMKGMATYEEDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I +HD +L F++ G VY R + P+ RNA G PLV +LSL + E++ +IIP+
Sbjct: 545 VEHMIFTSSHDKILVFTNLGKVYKLRGFSFPQFGRNAKGMPLVNLLSLEENEKLNAIIPI 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F +LV T NG +K+ L+L+++IR GI AI + DEL VR + V +
Sbjct: 605 KDFTERDYLVFATRNGTVKRTELSLYANIRVNGIKAININDDDELMAVRLTNGEKEVIIG 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S +G ++ + +RS+ R G + L + MD I
Sbjct: 665 SSDGKLVRFIEEDVRSMGRTATGVRGINLDKDECAVGMDTIQ------------------ 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+L +SE G+GK P+S +R L+ G G K + D+ + V
Sbjct: 707 --DDDQLVLSISEYGYGKLTPISEYR---LSHRGGKGVKTINITDKNGKLVTV--RAVTP 759
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
GE D +++V+ G V R + ISI R GV L+ L+ + SA++I + +
Sbjct: 760 GEHD--LMIVTNKGMVIRTPIEQISITGRATLGVRLINLKDDQFVASAAIIPSEDELEEE 817
Query: 922 FLPSTSDKLATES 934
+ ST +++ E
Sbjct: 818 IIESTGEEVKKEQ 830
>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius NCTC 11048]
Length = 882
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/860 (40%), Positives = 555/860 (64%), Gaps = 42/860 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-LELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG + +R K
Sbjct: 187 NMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E +R +++ EIP+Q NK+ ++EKIA+LV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIESRGGGRER--IVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LK+ L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I I+RE+ ++ A +L+ F LSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +L+L+ +E+ E+K +F R
Sbjct: 425 ILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ QL+D D+IP +++++ +S Y+KR+ +T+ QNRG G +D
Sbjct: 485 RTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLEDD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L E I+++I
Sbjct: 545 FVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELDQDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV +T G IK+ +L+ F+ I G IAI+ DEL VR D +
Sbjct: 605 VKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGDKHIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + +I +R++SR G +RL+DGD++ +D+ +D +
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDV------------ADDDNK 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
+ +L V+E G+GKR + +R +G+ K + + RL + V
Sbjct: 713 D-------EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTV----- 760
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E DE +++V+ G + R++V +IS+ R A+GV L+RL+ + + + + EPE
Sbjct: 761 ---EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVK-KEPED 816
Query: 920 DLFLPSTSDKLATESGVSEM 939
L S D +GVSE+
Sbjct: 817 ---LESDED-----TGVSEV 828
>gi|418631683|ref|ZP_13194135.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU128]
gi|374834351|gb|EHR97999.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU128]
Length = 893
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 545/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDVQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|417656839|ref|ZP_12306518.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
gi|418664975|ref|ZP_13226435.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU081]
gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
gi|374409756|gb|EHQ80531.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU081]
Length = 894
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
Length = 861
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/827 (42%), Positives = 533/827 (64%), Gaps = 34/827 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
+L + M S++ YSMSV++ RALPDVRDGLKPVHRRIL+ M ELG++ KP KK AR+VG
Sbjct: 16 DLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELGVTPDKPHKKSARIVG 75
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD+A+YD++VRMAQDFS RYPLI GHGNFGS+D D AAAMRYTE R+ ++
Sbjct: 76 DVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDGAAAMRYTEARMSKIA 135
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
ML DI++DT+NF N+D +++EP +LPAR+P LL+NGA+GIAVGMATNIPPHNL E+
Sbjct: 136 LEML-RDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAVGMATNIPPHNLAEV 194
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+ L L+ NP+ T EL+E +PGPDFPTGG+++G GI AY TGRG ITVRG+ ++E
Sbjct: 195 ISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRAYETGRGSITVRGRVQIEE 254
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
L + +R +II E+PY NK+ LVE+IA+L K ++GI+ + DESDR GMR+VIE++R
Sbjct: 255 LKNGKER--IIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDESDRVGMRVVIEVRR 312
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
S+V+N+LY+LT LQS+F NM+ I++ +PK + LKE+L+ +LD + VV RR+ F
Sbjct: 313 DVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRHYLDHQEEVVRRRSLFD 372
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
+ ++R HI+EG+ + LD++D ++ I+R + S A +E+ LS+KQA AILDM +
Sbjct: 373 KKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYGLSDKQAQAILDMRM 432
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RLT LER+K E L I LE++L+S + ++IEQE++E++ RF PR + L
Sbjct: 433 VRLTGLEREKIDAEYNELQATIQYLEKVLASEELRYEIIEQELLEIQQRFDNPRRTELLV 492
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
++ L+D D+I +++++ +++ GY+KR+ F Q RG G + +D + + I
Sbjct: 493 GEALSLEDEDLIEQEDVVITLTKNGYIKRLANTEFKAQRRGGRGVQGMSVHDDDYVENMI 552
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF-A 686
C HD +L+F++ G VY A+ Y+IPE +R A G P++ +L++ E+I +II V E
Sbjct: 553 SCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDSAEKIQAIISVPESDE 612
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+++L T+ G +K+V L+ F +IRT G+ AIQL DEL V + +D + + + +G
Sbjct: 613 TERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDDELIRVVVTSGNDGIILGTYHG 672
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+ D +R++ R G + L+DGD + MDI+ TP++
Sbjct: 673 NAVSFHEDKVRAMGRTASGVRGVSLRDGDYVIGMDIL----------TPDNE-------- 714
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESD 865
+L VSE G+GKR S + G+ + + ++ L + V D
Sbjct: 715 ---VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLVCLRTV--------TGD 763
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E +++++ G + R D+S R A GV +MRL+ + S +++
Sbjct: 764 EDLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSLAIV 810
>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
Length = 878
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/839 (41%), Positives = 546/839 (65%), Gaps = 34/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-LELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG + +R K
Sbjct: 187 NMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIESRGGGRDR--IVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LK+ L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I I+RE+ ++ A +L+ F LSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +L+L+ +E+ E+K +F R
Sbjct: 425 ILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ QL+D D+IP +++++ +S Y+KR+ +T+ QNRG G +D
Sbjct: 485 RTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V ++ L E I+++I
Sbjct: 545 FVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV +T G IK+ +L+ F+ I G IAI+ DEL VR + +
Sbjct: 605 VKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + +I +R++SR G +RL+DGD++ +D+ +D +
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDV------------ADDDNQ 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
+ +L V+E G+GKR + +R +G+ K + + RL + V
Sbjct: 713 D-------EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTV----- 760
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E DE +++V+ G + R++V +IS+ R A+GV L+RL+ + + + + EPE
Sbjct: 761 ---EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVK-KEPE 815
>gi|302870740|ref|YP_003839376.1| DNA gyrase subunit A [Caldicellulosiruptor obsidiansis OB47]
gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
Length = 809
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/819 (42%), Positives = 531/819 (64%), Gaps = 32/819 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAVEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + ++ N ATL ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + R +II E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 TSIE--QTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + ++ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEIIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + +ER HI+EG+ LD++D +I I+R + + S A L FK ++ QA AI
Sbjct: 364 RTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQRFKFTDVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R +D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVVTLTHFGYIKRLPLDTYKSQKRGGRGITGISTREDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ +S E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQISKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + +D V +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEVVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +R + R +G M L++GD + M+
Sbjct: 663 SGNGYCVVFNENDVRVMGRLAQGVKGMTLEEGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + D+ +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGK--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++++++ S G R+++ + +Q R +GV LMR++
Sbjct: 757 --EDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRID 793
>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417647443|ref|ZP_12297281.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
gi|417909200|ref|ZP_12552939.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU037]
gi|417912719|ref|ZP_12556405.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU109]
gi|418608524|ref|ZP_13171717.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU057]
gi|418608783|ref|ZP_13171963.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU065]
gi|418617375|ref|ZP_13180273.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU120]
gi|419769990|ref|ZP_14296078.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-250]
gi|419770810|ref|ZP_14296876.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-K]
gi|420166071|ref|ZP_14672759.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM088]
gi|420170953|ref|ZP_14677508.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM070]
gi|420172894|ref|ZP_14679391.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM067]
gi|420188870|ref|ZP_14694871.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM039]
gi|420194331|ref|ZP_14700146.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM021]
gi|420197595|ref|ZP_14703318.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM020]
gi|420207784|ref|ZP_14713270.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM008]
gi|420209624|ref|ZP_14715060.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM003]
gi|420235725|ref|ZP_14740261.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH051475]
gi|421608633|ref|ZP_16049849.1| DNA gyrase subunit A [Staphylococcus epidermidis AU12-03]
gi|82592835|sp|P0C0R0.1|GYRA_STAES RecName: Full=DNA gyrase subunit A
gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
gi|341653791|gb|EGS77557.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU037]
gi|341657211|gb|EGS80904.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU109]
gi|374401211|gb|EHQ72290.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU057]
gi|374409788|gb|EHQ80562.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU065]
gi|374818668|gb|EHR82818.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU120]
gi|383357672|gb|EID35139.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-250]
gi|383362637|gb|EID39984.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-K]
gi|394234126|gb|EJD79711.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM088]
gi|394239323|gb|EJD84768.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM070]
gi|394241160|gb|EJD86578.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM067]
gi|394253829|gb|EJD98819.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM039]
gi|394264908|gb|EJE09576.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM021]
gi|394265696|gb|EJE10347.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM020]
gi|394275017|gb|EJE19409.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM008]
gi|394278521|gb|EJE22836.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM003]
gi|394302394|gb|EJE45839.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH051475]
gi|406655793|gb|EKC82216.1| DNA gyrase subunit A [Staphylococcus epidermidis AU12-03]
Length = 893
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|420202665|ref|ZP_14708255.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM018]
gi|394269206|gb|EJE13744.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM018]
Length = 893
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|372488588|ref|YP_005028153.1| DNA gyrase subunit A [Dechlorosoma suillum PS]
gi|359355141|gb|AEV26312.1| DNA gyrase, A subunit [Dechlorosoma suillum PS]
Length = 873
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/891 (41%), Positives = 540/891 (60%), Gaps = 71/891 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHELG K +KK AR
Sbjct: 9 LPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ LL DID++TV+F PN+D S++EP +LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 RIGH-QLLEDIDKETVDFGPNYDGSEQEPLILPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE+V AL+ NP T+ EL++ +P PDFPT G+I G G+ + YRTGRGR+ +R KT
Sbjct: 188 GEVVAACLALLQNPNLTIDELIDIIPAPDFPTAGIIYGVAGVREGYRTGRGRVVMRAKTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE LD K R +II E+PYQ NK L+EKI ELV K ++GISD+RDESD+SGMR+VIE
Sbjct: 248 VEDLD-KGNRQALIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+L+++T LQ +F NMV ++DGQP+ + LK++L+ FL R V+ RR
Sbjct: 307 LKRGEMPEVVLNNLFKMTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLAHRREVLNRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------------- 488
F+L + +E+ H EG+ V LDN+D +I +++ AP+ + A L
Sbjct: 367 VFELRKAREKAHTQEGLAVALDNVDEIIALIKAAPTPADARRELMARMWVSATVTEMLAR 426
Query: 489 ------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
++L+E QA AIL++ L+RLT LER K V + K L+E+I
Sbjct: 427 ASLDATRPEGIAPEYGLSAQGYRLTEAQAQAILELRLQRLTGLERDKIVADYKELLEKIA 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + + ++I +E+ ++++F R S + A + L D+I +M++ +S
Sbjct: 487 DLMDILARPERVTEIIGEELTAIRDQFGDDRRSEIV-AYAQDLGIEDLITPQDMVVTLSH 545
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+K + Q RG GK ++ +D + V HD++L FS+RG Y + Y
Sbjct: 546 TGYIKSQPLADYRAQRRGGRGKQAAAMKDDDFVDHLFVANTHDYILCFSNRGRCYWLKVY 605
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
++P+ +R + G P++ + + +GE+I +I+PV EF+ D+++ M T+ G +KK SL FS+
Sbjct: 606 EVPQGSRISRGKPIINMFPMEEGEQINAILPVKEFSDDKYVFMCTVQGTVKKTSLANFSN 665
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIA+ L GD L T + + S G + D +R + R +RG M
Sbjct: 666 PRKAGIIAVDLDEGDYLIGADLTTGQSDIVLVSDGGKAVWFGEDQVRPMGRQSRGVRGMM 725
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L++G + S+ V S +L +E+G+GKR L FR+
Sbjct: 726 LQEGQSVISL--------------------LVAESEEETVLVATENGYGKRTRLGDFRRS 765
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G++ +A +R +V L D ++V+L++ G + R +V +I R
Sbjct: 766 SRGTQGVMA--IAASERNGK--IVAAKLVTDA---DEVMLITTGGVLIRTRVAEIRELGR 818
Query: 891 YARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ 941
+GV L+ L+ K+ ++ +E +TD D+LA EML+
Sbjct: 819 ATQGVTLISLDAGEKLSGLEKVAESEGDTD---AEAGDELAD----GEMLE 862
>gi|383764213|ref|YP_005443195.1| DNA gyrase subunit A [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381384481|dbj|BAM01298.1| DNA gyrase subunit A [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 916
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/839 (42%), Positives = 527/839 (62%), Gaps = 36/839 (4%)
Query: 68 NGNGSVATVGPNVS-PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILF 126
NGNG+ AT G + V + +EM +Y+ Y+MSV++ RALPD RDGLKPVHRRIL+
Sbjct: 39 NGNGA-ATHGNGFHIGNVRNVLIEQEMRTAYLDYAMSVIVARALPDARDGLKPVHRRILY 97
Query: 127 AMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFG 186
AM+++GL P+KK AR+VGEVLGK+HPHGD+AVYD++ RMAQDFSLRY L+ G GNFG
Sbjct: 98 AMYDMGLGPTSPYKKSARIVGEVLGKYHPHGDSAVYDAMARMAQDFSLRYCLVDGQGNFG 157
Query: 187 SIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLN 246
S+D D AAMRYTE RL ++E ML DID DTV++ NFD+S +EP++LPA LP LL+N
Sbjct: 158 SVDGDSPAAMRYTEARLSRIAETML-QDIDMDTVDWTNNFDDSLQEPTVLPAMLPNLLVN 216
Query: 247 GASGIAVGMATNIPPHNLGELVDVLCALIHN----PEATLQELLEYMPGPDFPTGGLIMG 302
G SGIAVGMATNIPPHNLGE+ D + +I N E L+EL++++ GPDFPTGG+I+G
Sbjct: 217 GTSGIAVGMATNIPPHNLGEIADAIAYVIDNWERRNEIGLEELMQFVKGPDFPTGGIILG 276
Query: 303 NLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENK 362
+ GI A+ TGRG+I VR KT +E L + R +I+ EIPYQ NKS L+E++AELV
Sbjct: 277 SEGIKQAFATGRGKILVRAKTSIEEL--RGGRFAIIVTEIPYQVNKSNLIERMAELVRED 334
Query: 363 TLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQ 422
LD ISD+RDESDR+GMRIVIELKRGA P N L++ T LQ+SF NM+ +++G+P
Sbjct: 335 KLDMISDLRDESDRTGMRIVIELKRGAAPKKARNRLFKHTQLQTSFGVNMLALVNGEPVT 394
Query: 423 MGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNS 482
+ L+ L +++ R V+ RR +F+L++ +ER HI+EG+ + L+ LD VI +R++ S
Sbjct: 395 LSLRRALIVYIEHRFDVLTRRTQFQLAKARERAHILEGLRIALEFLDEVIATIRQSESAD 454
Query: 483 TASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
A AL + F LS+ QA AILDM LRRL LER+K DE + + +I E+LL+ + I
Sbjct: 455 AARTALIERFGLSQVQAQAILDMQLRRLAALERQKIEDEYQETLARIAYYEDLLAHPEKI 514
Query: 543 LQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTF 602
LI ++++ LK RF PR +++ +G+ + D+I D +L++ S Y+KRM +F
Sbjct: 515 RGLIREDILSLKERFGDPRRTLIVHDANGEFSEEDLIAQDNVLISYSAGAYIKRMSVESF 574
Query: 603 NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGT 662
QNRG G R D + D + R DH+L+F+++G VYS+R Y++PE R A G
Sbjct: 575 RAQNRGGRGVKGMTTRSEDEVVDLLFARTLDHILFFTNKGRVYSSRVYELPEGNRTARGM 634
Query: 663 PLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
+ +L+L E +T+++ V +F +++ +LT G IK++ LN F++IR+TG+IA+ L
Sbjct: 635 HIANVLNLMPDETVTTMLVVPDFEMAEYITLLTRQGRIKRMDLNAFANIRSTGLIAMTLE 694
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMD 781
GD L W R + + ++ G + + + +R + R G +A+RL+ + D++ D
Sbjct: 695 EGDSLNWARLTKGGEDFIVVTRRGRALRFNEEDVRPMGRTAAGVMAIRLQGEDDEVVGFD 754
Query: 782 IIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841
++ H D LL + G+GKR PL + G+
Sbjct: 755 VVKP--HAD-------------------LLVIHAQGYGKRTPLREYGVHGRYTQGVWATD 793
Query: 842 FSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ + + + A E +Q+ +++ +G V R V I + R RGV ++ L
Sbjct: 794 YTRLEEIGPIVA-----ARVVEPRDQITVMTANGIVLRTPVSGIRVAGRMTRGVRVVNL 847
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 578 IIPNDEM---LLAISEKGYVKRMKPNTF-NLQNRGTI------GKSVGKLRVNDAMSDFI 627
++P+ EM + ++ +G +KRM N F N+++ G I G S+ R+ DFI
Sbjct: 653 VVPDFEMAEYITLLTRQGRIKRMDLNAFANIRSTGLIAMTLEEGDSLNWARLTKGGEDFI 712
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
V L F++ + R AAG +++ D ++
Sbjct: 713 VVTRRGRALRFNEE---------DVRPMGRTAAGVMAIRLQGEDD-----EVVGFDVVKP 758
Query: 688 DQFLVMLTMNGYIKKVSLNLFS--SIRTTGIIAIQLVPGDELKWV---RCCTNDDLVAMA 742
L+++ GY K+ L + T G+ A +E+ + R D + +
Sbjct: 759 HADLLVIHAQGYGKRTPLREYGVHGRYTQGVWATDYTRLEEIGPIVAARVVEPRDQITVM 818
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ NG+V+ + IR R TRG + L DGD +A++ ++ H DL R +D
Sbjct: 819 TANGIVLRTPVSGIRVAGRMTRGVRVVNLLDGDSVAAVAVMT---HDDLNRGVDDG 871
>gi|352683421|ref|YP_004895404.1| type IIA topoisomerase [Acidaminococcus intestini RyC-MR95]
gi|350278074|gb|AEQ21264.1| type IIA topoisomerase [Acidaminococcus intestini RyC-MR95]
Length = 842
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/866 (42%), Positives = 544/866 (62%), Gaps = 48/866 (5%)
Query: 64 DEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRR 123
D+++N G T G +++PV + EEM SYI Y+MSV++ RALPDVRDGLKPVHRR
Sbjct: 6 DDQQN-EGQTITAG-----KVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRR 59
Query: 124 ILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHG 183
IL+AM+E G+ K +KK AR+VG+VLGK+HPHGD +VYD++VR+AQDFS RY ++ GHG
Sbjct: 60 ILYAMNEAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHG 119
Query: 184 NFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243
NFGSID DP AAMRYTE R+ ++ ML DI++DTV+F+PN+DES KEP++LP+++P L
Sbjct: 120 NFGSIDGDPPAAMRYTEVRMGKIAVEML-RDIEKDTVDFIPNYDESLKEPTVLPSKVPAL 178
Query: 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGN 303
L+NG++GIAVGMATNIPPHNLGE+VD L LI +P+AT+++L+ + GPDFPTG I+G
Sbjct: 179 LINGSAGIAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGV 238
Query: 304 LGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKT 363
GI AY TGRG + VR K VE + R +++ EIPYQ NK+ L+E IA LV++KT
Sbjct: 239 SGIRQAYTTGRGVVKVRAKAHVEPMPKNKNR--IVVTEIPYQVNKARLIESIAHLVQDKT 296
Query: 364 LDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQM 423
L+GI+D+RDESDR GMRIVIEL+ P I++N LY+ T +Q SF + ++ G P+ +
Sbjct: 297 LEGITDLRDESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRIL 356
Query: 424 GLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483
LKE+L +L+ + V+ R+ R++L++ KER HI+ G+ + LD+LD VI +R + +
Sbjct: 357 NLKEILVYYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEI 416
Query: 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNIL 543
A A+L +F LSEKQA AILDM L+RLT LERKK DE +M I LE +L+ I+
Sbjct: 417 ARASLISKFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIM 476
Query: 544 QLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFN 603
+ + + +++K RF PR + + D+G++D D+I +++++ IS + Y+KR F
Sbjct: 477 GIAKDDFLDVKKRFGDPRRTSIV-PDAGEIDAEDLIAEEDIVITISHQSYIKRQALTNFR 535
Query: 604 LQNRGTIGKSVGKLRV----NDAMSDF----IVCRAHDHVLYFSDRGIVYSARAYKIPEC 655
QNRG G G ++ N DF ++ HD++L+F+++G VY + Y+IPE
Sbjct: 536 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPEA 595
Query: 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGD---QFLVMLTMNGYIKKVSLNLFSSIR 712
R A GT + +L L + E+IT+II V + +FL M T G IKK S++ F + R
Sbjct: 596 GRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKTAR 655
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+IAI L ++L V+ + + +A+++G I + +R + R G + L+
Sbjct: 656 RAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVRGITLR 715
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
D + SMD + +G SG +L V+E G GKR +S +R
Sbjct: 716 HHDVLVSMD-------------------SCEGDSGE-VLTVTEGGLGKRTDISEYRLQTR 755
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
G+I K + + +VG L D ++L+S +G + R+K DIS +R A
Sbjct: 756 GGKGIINLKVTNK----TGDIVGSKLVND---HHDILLISAAGIIIRMKASDISSYSRNA 808
Query: 893 RGVILMRLELSGKIQSASLISVTEPE 918
+GV +M LE K+ + +++ E
Sbjct: 809 QGVKMMDLEKGDKVAALAIVDTVSDE 834
>gi|197335945|ref|YP_002156004.1| DNA gyrase subunit A [Vibrio fischeri MJ11]
gi|423685947|ref|ZP_17660755.1| DNA gyrase subunit A [Vibrio fischeri SR5]
gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
gi|371494015|gb|EHN69613.1| DNA gyrase subunit A [Vibrio fischeri SR5]
Length = 878
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/855 (42%), Positives = 545/855 (63%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ A I N E T+ EL+ Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K +E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKANIEA--DKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY LT LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A L
Sbjct: 360 VVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ ++ L+E+QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I E++ +++ + R + + A +D D+I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEI-GAAIHDIDMEDLITQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKA 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
YS + +++P+ +R A G P+V IL L +GERIT+I+PVSE++ D+F+ M T +G +KK S
Sbjct: 599 YSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L+ F+ +R G+IA+ L D L V + + S+ G V+ + + +R + R
Sbjct: 659 LDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMGRTAS 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLSGEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTVL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G++ K S + VVG AEDG ++ ++++ +GT+ R +V +
Sbjct: 758 SEYPAKSRATQGVVSIKVSERNG----SVVGAVQAEDG---DEFMMITDAGTLVRTRVSE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
Length = 838
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/866 (42%), Positives = 544/866 (62%), Gaps = 48/866 (5%)
Query: 64 DEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRR 123
D+++N G T G +++PV + EEM SYI Y+MSV++ RALPDVRDGLKPVHRR
Sbjct: 2 DDQQN-EGQTITAG-----KVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRR 55
Query: 124 ILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHG 183
IL+AM+E G+ K +KK AR+VG+VLGK+HPHGD +VYD++VR+AQDFS RY ++ GHG
Sbjct: 56 ILYAMNEAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHG 115
Query: 184 NFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243
NFGSID DP AAMRYTE R+ ++ ML DI++DTV+F+PN+DES KEP++LP+++P L
Sbjct: 116 NFGSIDGDPPAAMRYTEVRMGKIAVEML-RDIEKDTVDFIPNYDESLKEPTVLPSKVPAL 174
Query: 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGN 303
L+NG++GIAVGMATNIPPHNLGE+VD L LI +P+AT+++L+ + GPDFPTG I+G
Sbjct: 175 LINGSAGIAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGV 234
Query: 304 LGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKT 363
GI AY TGRG + VR K VE + R +++ EIPYQ NK+ L+E IA LV++KT
Sbjct: 235 SGIRQAYTTGRGVVKVRAKAHVEPMPKNKNR--IVVTEIPYQVNKARLIESIAHLVQDKT 292
Query: 364 LDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQM 423
L+GI+D+RDESDR GMRIVIEL+ P I++N LY+ T +Q SF + ++ G P+ +
Sbjct: 293 LEGITDLRDESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRIL 352
Query: 424 GLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483
LKE+L +L+ + V+ R+ R++L++ KER HI+ G+ + LD+LD VI +R + +
Sbjct: 353 NLKEILVYYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEI 412
Query: 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNIL 543
A A+L +F LSEKQA AILDM L+RLT LERKK DE +M I LE +L+ I+
Sbjct: 413 ARASLISKFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIM 472
Query: 544 QLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFN 603
+ + + +++K RF PR + + D+G++D D+I +++++ IS + Y+KR F
Sbjct: 473 GIAKDDFLDVKKRFGDPRRTSIV-PDAGEIDAEDLIAEEDIVITISHQSYIKRQALTNFR 531
Query: 604 LQNRGTIGKSVGKLRV----NDAMSDF----IVCRAHDHVLYFSDRGIVYSARAYKIPEC 655
QNRG G G ++ N DF ++ HD++L+F+++G VY + Y+IPE
Sbjct: 532 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPEA 591
Query: 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGD---QFLVMLTMNGYIKKVSLNLFSSIR 712
R A GT + +L L + E+IT+II V + +FL M T G IKK S++ F + R
Sbjct: 592 GRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKTAR 651
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+IAI L ++L V+ + + +A+++G I + +R + R G + L+
Sbjct: 652 RAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVRGITLR 711
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
D + SMD + +G SG +L V+E G GKR +S +R
Sbjct: 712 HHDVLVSMD-------------------SCEGDSGE-VLTVTEGGLGKRTDISEYRLQTR 751
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
G+I K + + +VG L D ++L+S +G + R+K DIS +R A
Sbjct: 752 GGKGIINLKVTNK----TGDIVGSKLVND---HHDILLISAAGIIIRMKASDISSYSRNA 804
Query: 893 RGVILMRLELSGKIQSASLISVTEPE 918
+GV +M LE K+ + +++ E
Sbjct: 805 QGVKMMDLEKGDKVAALAIVDTVSDE 830
>gi|392412494|ref|YP_006449101.1| DNA gyrase subunit A [Desulfomonile tiedjei DSM 6799]
gi|390625630|gb|AFM26837.1| DNA gyrase subunit A [Desulfomonile tiedjei DSM 6799]
Length = 859
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/819 (43%), Positives = 531/819 (64%), Gaps = 36/819 (4%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + EE+ SY+ Y+MSV++GRALPD+RDGLKPVHRRIL+AM G + ++K AR
Sbjct: 8 VTVGIEEEIQKSYLDYAMSVIVGRALPDLRDGLKPVHRRILYAMFRAGNLWNRAYRKAAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VG+V+G++HPHGD AVYDS+VRMAQ FS+RY I G GNFGS+D D AAAMRYTE R++
Sbjct: 68 AVGDVIGQYHPHGDAAVYDSIVRMAQPFSMRYTFIDGQGNFGSVDGDSAAAMRYTEVRMD 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ +A LL D+D++TV+FVPN+D S +EP +LPAR P LL+ G+ GIAVGMATNIPPHNL
Sbjct: 128 RICQA-LLEDLDKETVDFVPNYDNSLQEPLVLPARFPVLLVIGSQGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE +D LI NP A++ EL+E++P PDFPTGG ++G G +DAY TGRG +T+R KTE
Sbjct: 187 GETIDATIHLIKNPSASVGELIEHLPAPDFPTGGFLLGRRGAIDAYTTGRGSVTMRAKTE 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E D+ +++ EIPY NK+ +VE +A+LV++K + GI DIRDES+R G+R+V E
Sbjct: 247 IE--DAGKGYQRIVVTEIPYLVNKARMVENVADLVKDKRIAGIRDIRDESNRQGIRVVFE 304
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P +++N L+R T LQ++F ++ + G+PKQM LKE+LQ F+DFR VV RR
Sbjct: 305 LKKDENPDVILNQLFRFTQLQTNFGIQLLSVDQGRPKQMNLKEILQGFIDFRKEVVIRRT 364
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
R++L++ +ER HI+EG+ + LDNLDRVI+++R + + + A AL +EF LS QA AILD
Sbjct: 365 RYELARARERAHILEGLKIALDNLDRVIQVIRASENPNAAKQALMEEFGLSPVQAQAILD 424
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS- 563
M L+RLT LER+K + E ++ +I +LE +L+S + IL +I E+ + K++F PR +
Sbjct: 425 MRLQRLTGLEREKILQELAEVLAKIAELEGILASEQKILDIIVTELQQTKDQFGDPRRTE 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+LE D G++ D D+IP +M++ S +GYVKR+ N + Q G G+ K+ +D +
Sbjct: 485 ILE--DKGEMLDEDLIPRGDMVVTFSSRGYVKRVPANLYKSQRPGGKGRIGTKVTEDDVV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ + +HD +L FS+RG V+ R +++PE + A G ++ +L L GE+I I+PV
Sbjct: 543 NQILYASSHDVLLCFSNRGRVHWLRVFQLPEESPYARGKAIINLLRLDPGEKIRKILPVQ 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E + F+VM + G IKK ++ FS R +G+IA+ + P DEL V T ++ + +A+
Sbjct: 603 ELRTEGFVVMTSRQGKIKKTAIEEFSRPRLSGLIALTIDPDDELIDVNFTTGENHILLAT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G+ + +R + R RG +RLK GD + M+++
Sbjct: 663 ARGLAMRFHESQVRPMGRQARGVTGIRLKKGDSVIGMEVV-------------------- 702
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDG 862
S LL ++ SG GKR L + G+I K +A+ + AV VV G
Sbjct: 703 -SDDGTLLTITRSGFGKRTSLEEYPSKNRGGQGVITIKNTAKLGEVVAVKVV-------G 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++D ++L S G + R+++ +IS+ R G L+R++
Sbjct: 755 DTDHLLILTS-GGKIIRLRMEEISVIGRNTMGRTLVRMD 792
>gi|418328435|ref|ZP_12939547.1| DNA gyrase, A subunit [Staphylococcus epidermidis 14.1.R1.SE]
gi|365231960|gb|EHM72976.1| DNA gyrase, A subunit [Staphylococcus epidermidis 14.1.R1.SE]
Length = 893
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/821 (42%), Positives = 537/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDVQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV LM+L
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL 798
>gi|420164544|ref|ZP_14671272.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM095]
gi|420169308|ref|ZP_14675910.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM087]
gi|394231438|gb|EJD77067.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM095]
gi|394231516|gb|EJD77143.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM087]
Length = 893
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/821 (42%), Positives = 537/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV LM+L
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL 798
>gi|420200867|ref|ZP_14706506.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM031]
gi|394267463|gb|EJE12053.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM031]
Length = 893
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/821 (42%), Positives = 537/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV LM+L
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL 798
>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
Length = 847
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/856 (41%), Positives = 545/856 (63%), Gaps = 34/856 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++S RI V+L +M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP
Sbjct: 4 DMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GKFHPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRY
Sbjct: 64 YKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML DI++DTV+F PN+D ++KEP++LPAR P LL+NGASGIAVGMATN
Sbjct: 124 TEARMSKIALEML-RDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IP HNLGE++ + L++NP+ T+ EL++ +PGPDFPTGG++MG GI AY TGRG I
Sbjct: 183 IPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSII 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K ++E + K+ + +I+ EIPY NK+ L+ +IA+L NK +DGI+D+ DE+DR G
Sbjct: 243 VRAKVDIE--EQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVI+++R A +++N+LY++T +Q++F+ NM+ I++G PK + LK++LQ +L+ +
Sbjct: 301 MRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQED 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
VV RR F L + + R HIVEG+ + LD++D +I I+R++ ++ A L + LS++Q
Sbjct: 361 VVRRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L RLT LER+K E K L E I +++L+ R+ I Q+I E++E++ +F
Sbjct: 421 AQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRERINQIIYDELMEIQKKFG 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + L+ D ++D D+I ++++ ++ GY+KR+ + F Q+RG G +
Sbjct: 481 DKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMGVH 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD +L+F++ G VYS + Y++PE R A G P++ +L++ E+I++
Sbjct: 541 NDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLLNIDSKEKISA 600
Query: 679 IIPVSEFAG--DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
+I VS D+FL T +G +K+ + F +IR+ G+ AI L DEL V +
Sbjct: 601 VINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAINLHDDDELIDVDVIEDQ 660
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + ++NG + + ++RS+ R G +RL+D D + I A LH+D
Sbjct: 661 QTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDNDSV----IGAAPLHQD------ 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
NV L +SE+G GK+ P + + P+ G +G K + V
Sbjct: 711 ---DNV--------LVISENGFGKQTPAAEY---PIKGRGGLGVKTVNVTKKNGPLVGMT 756
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++A DE ++LV+ G + R + +S R A GV L++++ K+ + + + E
Sbjct: 757 TVA----GDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVE-KE 811
Query: 917 PETDLFLPSTSDKLAT 932
++D T D AT
Sbjct: 812 DDSDDDAQGTEDDSAT 827
>gi|420176464|ref|ZP_14682884.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM061]
gi|394241008|gb|EJD86429.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM061]
Length = 893
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|343503215|ref|ZP_08741043.1| DNA gyrase subunit A [Vibrio tubiashii ATCC 19109]
gi|418481682|ref|ZP_13050709.1| DNA gyrase subunit A [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812150|gb|EGU47164.1| DNA gyrase subunit A [Vibrio tubiashii ATCC 19109]
gi|384570700|gb|EIF01259.1| DNA gyrase subunit A [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 875
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/855 (41%), Positives = 548/855 (64%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I+N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K ++E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKADIET--DKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPEWLEDQYGIHDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+ +++ F R + + A S +D ++I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAA-SHDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P+ +R A G P+V IL L +GERIT+I+PV EF+ D+F+ M T +G +KK
Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVDEFSEDKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R G+IA+ L D L V D + + S+ G V+ + D +R++ R
Sbjct: 659 LNQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L + D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLAEDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 AEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
+D D+ + + G VK+ N F N++ G I + LR +D++ +
Sbjct: 636 VDEFSEDKFIFMATGDGTVKKTPLNQFANVRANGLIAVN---LRDDDSLIGVDITNGDSD 692
Query: 635 VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLVM 693
++ FS G V K+ R AAG V+ + L++ +++ S I+P +E GD ++
Sbjct: 693 IMLFSKAGKVVRFAEDKVRAMGRTAAG---VRGMKLAEDDQVVSLIVPSNE--GD--ILT 745
Query: 694 LTMNGYIKKVSLNLFSSI--RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVI 749
+T NGY K+ L + + T G+++I++ G + V+ D+++ M + G ++
Sbjct: 746 VTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMM-MITDAGTLV 804
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + + RNT+G +R + + + +
Sbjct: 805 RTRVAEVSQVGRNTQGVTLIRTAEDENVVGL 835
>gi|420178303|ref|ZP_14684635.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM057]
gi|420180890|ref|ZP_14687099.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM053]
gi|394246493|gb|EJD91749.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM057]
gi|394248369|gb|EJD93607.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM053]
Length = 893
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVKEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
Length = 833
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/820 (43%), Positives = 532/820 (64%), Gaps = 31/820 (3%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
PR + V + +EM SY+ Y+MSV++GRA+PDVRDGLKPVHRR+LFAM E+G KP+KK
Sbjct: 7 PRNILVNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VG+++GK+HPHGD A YD++VR+AQDFS+RYPLI G GNFGSID DP AAMRYTE
Sbjct: 67 SARIVGDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEV 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
R+ ++E +LAD+++DTV+FVPN+DES EPS+LP+R+PTLLLNG +GIAVG+ATNIPP
Sbjct: 127 RMARITEE-ILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
HN+ E++ ALI NPE TL+E+++++PGPDFPT G I G GI+ AYRTGRG I +R
Sbjct: 186 HNVTEVLSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRA 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K +E + ++ R +++ EIPYQ NK+ L+EKI+ELV+ K + GISD+RDESDR G+RI
Sbjct: 246 KVVIEK-NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRI 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI+LKR + ++++N LY+ T ++S+F M+ I +GQP L E+L++F++FR V+
Sbjct: 305 VIDLKRDENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIV 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR F++++ +ER HI+EG+++ LDN+D V+ +++ + S A++AL F L++ QA A
Sbjct: 365 RRTTFEVNKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSRFSLTDIQARA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LE+ K +E L+++I +L+ +L + +L++I E+ E+ +R+ R
Sbjct: 425 ILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVIISEMEEIIDRYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + A S +D D+I +EM++ S+ GY+KR + + Q RG GK + D
Sbjct: 485 RTEIV-ASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVGMMTKEED 543
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + HD+VL F++ G +Y + Y+IP+ R A G P+V ++++ ER+ +++P
Sbjct: 544 VVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIGPDERVAAVLP 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V F Q ++M T G +KK L +S+ R+ GIIA+ + GDEL V+ D V +
Sbjct: 604 VRSFEEGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALSIDEGDELVDVKLTGGDQDVFL 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A++ G I D IR++ R RG + + D + MDI P +
Sbjct: 664 ATRKGKAIRFKEDDIRTMGRTARGVRGISMDSDDAVIGMDI------------PRE---- 707
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
G ++ VSE G GKR +S +R G+I + + L A L
Sbjct: 708 -----GNAIVTVSEKGCGKRTAVSEYRLQKRGGKGMINLRIVPKGGLVADI-----LQVT 757
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
GE D ++L+S SG + R+KV D+ + R +GV L+ L+
Sbjct: 758 GEED--LLLMSNSGKIIRMKVEDVPLIHRVTQGVKLIELD 795
>gi|347540031|ref|YP_004847456.1| DNA gyrase subunit A [Pseudogulbenkiania sp. NH8B]
gi|345643209|dbj|BAK77042.1| DNA gyrase, A subunit [Pseudogulbenkiania sp. NH8B]
Length = 861
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/866 (43%), Positives = 532/866 (61%), Gaps = 65/866 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHEL + +KK AR
Sbjct: 11 IPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSAR 70
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VRMAQDFSLRYPLI G GNFGS+D D AAAMRYTE R+
Sbjct: 71 IVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEIRMA 130
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLADI+++TV+F PN+D S++EP +LPA++P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 131 RIAHE-LLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNL 189
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D A++ + + T+ EL++ +P PDFPT G+I G G+ + YRTGRGR+ +R +T
Sbjct: 190 NEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGRVIMRARTH 249
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E + K R +I+ E+PYQ NK+ L+E+I ELV +K ++GISD+RDESD+SGMR+VIE
Sbjct: 250 FEDI-GKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKSGMRVVIE 308
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N LY+LT LQ SF NMV ++DGQP+ + LK++L+ FL R VV RR
Sbjct: 309 LKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRREVVTRRT 368
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F+L + +ER HI+EG+ V L N+D +I +++ + + A AL +
Sbjct: 369 IFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPLVEEMLAR 428
Query: 492 ---------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+KLSE QA AIL++ L+RLT LE+ K V E + +ME IL
Sbjct: 429 VDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYREIMEVIL 488
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I Q+I E+ +K +F R S +E G ++ D+I +M++ +S
Sbjct: 489 DLIDILARPERINQIISDELNAVKTQFGDTRRSEIEPF-GGDINIEDLITPQDMVVTVSH 547
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+K + + Q RG GK + +D + V HD+VL FS G Y + Y
Sbjct: 548 TGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFGRCYWIKVY 607
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+P+ RN+ G P+V +LSL++GE+I +++PV EF DQ++ M T NG +KK L FS
Sbjct: 608 DLPQGGRNSRGKPIVNVLSLAEGEKINAMLPVKEFRDDQYVFMCTANGTVKKTPLVDFSR 667
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
RT GIIA+ L GD L V DD V + S G + S +R++ RN G M
Sbjct: 668 PRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAMGRNATGVRGMM 727
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L +G ++ S+ V S +L S+ G+GKR FR
Sbjct: 728 LGEGQQVISL--------------------LVTCSEDQMVLTASDGGYGKRTRAGEFRHT 767
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I + + L +V SL E E+D+ V+L++ G + R KV ++ R
Sbjct: 768 SRGTQGVIAMDLTDKTGLK---LVAASLVE--ETDD-VMLITTGGVLIRTKVSEVRETGR 821
Query: 891 YARGVILMRLELSGKIQSASLISVTE 916
A+GV L+ L+ K+ SL+ V E
Sbjct: 822 SAQGVRLINLDEGEKL--ISLVKVAE 845
>gi|336112686|ref|YP_004567453.1| DNA gyrase subunit A [Bacillus coagulans 2-6]
gi|335366116|gb|AEH52067.1| DNA gyrase, A subunit [Bacillus coagulans 2-6]
Length = 824
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/820 (43%), Positives = 541/820 (65%), Gaps = 37/820 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IV V L +EM S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+AM++LG++ K +KK A
Sbjct: 9 IVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMNDLGMTPDKAYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D DPAAAMRYTE R+
Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTEARM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S LL DI++DT++F N+D S+KEP++LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 SKIS-LELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D + AL +P+ T+QEL+EY+PGPDFPT GLI+G GI AY TGRG IT+R +
Sbjct: 188 LGEVIDAILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSITLRARV 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + +I+ E+PYQ NK+ L+E+IAELV K +DGI+D+RDESDR+GMR+VI
Sbjct: 248 EIE--QRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E++R A+ ++++N+LY+ TA+Q++F N++ ++ GQPK + LK+ L+ +LD + V+ RR
Sbjct: 306 EVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVIRRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + + R HI+EG+ + LD++D +I+++R + + A L ++F LSEKQA AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFSLSEKQAQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E + L++ I +L+ +L+ + +L++I +E++E+K RF+ R +
Sbjct: 426 DMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEIKERFNDERRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--D 621
+ A ++D D+IP + + + ++ GY+KR+ +T+ Q RG G+ V + N D
Sbjct: 486 EIIAASVDHIEDEDLIPQESIAITLTHNGYIKRLPISTYRSQKRG--GRGVQGMGTNEDD 543
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ + HD +L+F+++G VY + Y+IPE R A G P+V +L + E I ++I
Sbjct: 544 FVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGRTAKGIPIVNLLEIDRDEWINTMIR 603
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F D FL T G K+ + F++IRT G+IAI L DEL V+ + +
Sbjct: 604 VEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDELISVKMTDGHKEIII 663
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++NGM+I +RS+ R+ G + L D++ M+I LE +
Sbjct: 664 GTKNGMLIRFPETDVRSMGRSATGVKGITLSGDDEVVGMEI--------LEENDD----- 710
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAE 860
+L V+++G+GKR S +R GL ++++ L AV V
Sbjct: 711 --------VLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLIAVKTV------ 756
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D V+L++ G + R+ V DIS+ R GV L+RL
Sbjct: 757 TGEED--VMLITAGGVLIRMAVGDISVLGRNTMGVKLIRL 794
>gi|420218946|ref|ZP_14723990.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH04008]
gi|420227734|ref|ZP_14732498.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05003]
gi|394291350|gb|EJE35166.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH04008]
gi|394296585|gb|EJE40210.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05003]
Length = 893
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 543/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDYSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Pseudogulbenkiania ferrooxidans 2002]
gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Pseudogulbenkiania ferrooxidans 2002]
Length = 861
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/866 (43%), Positives = 531/866 (61%), Gaps = 65/866 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHEL + +KK AR
Sbjct: 11 IPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSAR 70
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VRMAQDFSLRYPLI G GNFGS+D D AAAMRYTE R+
Sbjct: 71 IVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEIRMA 130
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLADI+++TV+F PN+D S++EP +LPA++P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 131 RIAHE-LLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNL 189
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D A++ + + T+ EL++ +P PDFPT G+I G G+ + YRTGRGR+ +R +T
Sbjct: 190 NEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGRVIMRARTH 249
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E + K R +I+ E+PYQ NK+ L+E+I ELV +K ++GISD+RDESD+SGMR+VIE
Sbjct: 250 FEDI-GKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKSGMRVVIE 308
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N LY+LT LQ SF NMV ++DGQP+ + LK++L+ FL R VV RR
Sbjct: 309 LKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRREVVTRRT 368
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F+L + +ER HI+EG+ V L N+D +I +++ + + A AL +
Sbjct: 369 IFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPLVEEMLAR 428
Query: 492 ---------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+KLSE QA AIL++ L+RLT LE+ K V E + +ME IL
Sbjct: 429 VDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYREIMEVIL 488
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I Q+I E+ +K +F R S +E G ++ D+I +M++ +S
Sbjct: 489 DLIDILARPERINQIISDELNAIKTQFGDARRSEIEPF-GGDINIEDLITPQDMVVTVSH 547
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+K + + Q RG GK + +D + V HD+VL FS G Y + Y
Sbjct: 548 SGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFGRCYWIKVY 607
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+P+ RN+ G P+V +L L++GE+I +++PV EF DQF+ M T NG +KK L FS
Sbjct: 608 DLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFRDDQFVFMCTANGTVKKTPLVDFSR 667
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
RT GIIA+ L GD L V DD V + S G + S +R++ RN G M
Sbjct: 668 PRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAMGRNATGVRGMM 727
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L +G ++ S+ V S +L S+ G+GKR FR
Sbjct: 728 LGEGQQVISL--------------------LVTCSEDQMVLTASDGGYGKRTRAGEFRHT 767
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I + + L +V SL E E+D+ V+L++ G + R KV ++ R
Sbjct: 768 SRGTQGVIAMDLTDKTGLK---LVAASLVE--ETDD-VMLITTGGVLIRTKVSEVRETGR 821
Query: 891 YARGVILMRLELSGKIQSASLISVTE 916
A+GV L+ L+ K+ SL+ V E
Sbjct: 822 SAQGVRLINLDEGEKL--ISLVKVAE 845
>gi|403068972|ref|ZP_10910304.1| DNA gyrase subunit A [Oceanobacillus sp. Ndiop]
Length = 855
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/833 (41%), Positives = 545/833 (65%), Gaps = 36/833 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ V + EM S++ YSMSV++ RALPDVRDG+KPVHRRIL+AM++LG+ S K KK A
Sbjct: 8 VQEVNISNEMRTSFLDYSMSVIVSRALPDVRDGMKPVHRRILYAMNDLGMHSDKAHKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD AVY+++VRMAQDFS R L+ GHGNFGS+D D AAAMRYTE R+
Sbjct: 68 RIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDQAAAMRYTEARM 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ L+ D+++DTV++ N+D S++EP + PAR P LL+NG SGIAVGMATNIPPHN
Sbjct: 128 SKIA-MELVRDLNKDTVDYRDNYDGSEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
L E +D + A+ +PE T+ EL+E Y+ GPDFPT G+I+G GI AY TG+G IT+R +
Sbjct: 187 LRETIDAVLAISKDPEITIDELMEDYIHGPDFPTSGIIIGRSGIRKAYETGKGSITMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E + + + +++ E+PYQ NK+ LVEKIAELV +K ++GI+D+RDES R GMRIV
Sbjct: 247 VDIE--EHANGKSTILVTELPYQVNKARLVEKIAELVRDKRIEGITDLRDESSRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+E++R A+ ++++N+LY+ T+LQ++F N + ++DG+PK + +K+ L+ +LD + V+ R
Sbjct: 305 MEVRRDANANVILNNLYKYTSLQTTFGVNTLALVDGEPKVLTIKQCLEHYLDHQKVVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L + F LSEKQA AI
Sbjct: 365 RTAFELKKAEARAHILEGLRIALDHLDEVISLIRNSKTTDIARNGLIERFNLSEKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E LM+ I +L+E+L++ + +L++I +E+ E+K RF R
Sbjct: 425 LDMRLQRLTGLEREKIENEYSELMQLIGELKEILANEEKVLEIIREELTEIKERFGDDRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + +G +D D+IP + +++ ++ +GY+KR+ +T+ Q RG G+ + + N
Sbjct: 485 TEIVAGGAGFFEDEDLIPEENIVITLTNQGYIKRLPASTYRTQKRG--GRGIQGMGTNED 542
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + HD VL+F+++G VY A+ Y++PE +R A G P++ +L + GE + ++I
Sbjct: 543 DFVEHLVSTSTHDTVLFFTNKGKVYKAKGYEVPEYSRTAKGIPIINLLQVEKGEWVNAVI 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+++ + FL T +G K+ SL+ F +IR G+IA+ L DEL VR + +
Sbjct: 603 SVTDYDEEAFLFFTTKHGIAKRTSLDKFQNIRKGGLIAVGLREDDELISVRLTDGNKDMM 662
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+A++NG +I IR++ R G + L+D D + SM+II P+
Sbjct: 663 IATKNGYLIRFEETQIRAMGRTAAGVKGISLRDDDIVVSMEIIE----------PDSK-- 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+ G GK+ S +R+ +NR G + +++ V V A
Sbjct: 711 ---------ILHVTNKGFGKQTYESEYRR--INRGGKGVFTCKLDEKTGNVVAVK---AV 756
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
DG DE +++++ +G + RI+V +ISI R +GV L+RL+ ++ + + I+
Sbjct: 757 DG--DEDLMMITIAGVLIRIQVSEISITGRNTKGVHLIRLQEGEEVATVTKIA 807
>gi|417911937|ref|ZP_12555634.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU105]
gi|418621991|ref|ZP_13184753.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU123]
gi|341651694|gb|EGS75491.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU105]
gi|374828061|gb|EHR91908.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU123]
Length = 893
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ +L+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINKLMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|417659231|ref|ZP_12308841.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
gi|418604548|ref|ZP_13167895.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU041]
gi|420215374|ref|ZP_14720643.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05005]
gi|420216526|ref|ZP_14721733.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05001]
gi|420230695|ref|ZP_14735374.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH04003]
gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
gi|374404771|gb|EHQ75739.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU041]
gi|394282350|gb|EJE26551.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05005]
gi|394291787|gb|EJE35573.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH05001]
gi|394296117|gb|EJE39747.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH04003]
Length = 893
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 543/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
Length = 817
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/840 (42%), Positives = 537/840 (63%), Gaps = 34/840 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +++PV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+K
Sbjct: 6 SDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD +VYD+ VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ ML ADID++TV+F+PN+D S +EP++LP+++P LL+NG++GIAVGMATNIP
Sbjct: 126 VRMAKITGEML-ADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE+VD LI P+A+L+E++ + GPDFPTG IMG GIL AY TGRG + +R
Sbjct: 185 PHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSVKMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
VE + R +++ EIPYQ NK+ ++E IAEL N+ +DGI+ +RDESDR G+R
Sbjct: 245 SCAAVEPMTKGKNR--IVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+ +P I++N LY+ T LQ +F M+ ++DG P+ + L +VLQ +L + V+
Sbjct: 303 IVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR RF+L + R HI+EG+++ LD++D VIR +RE+ ++ TA +L F L++KQA
Sbjct: 363 TRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAV 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM LRRLT LER+K +E + L E+I L +L+ + ++++++ E++E K RF
Sbjct: 423 AILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDV 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + L AD+ +L D+IP++ M+L ++ +GY+KR+ N ++ QN+G G +
Sbjct: 483 RRTQLA-ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKGMGTKDE 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSI 679
DA++ + A VL+F++ G VY +AY+IPE +RN+ G + IL LS GE++ ++
Sbjct: 542 DAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTGEKVNAL 601
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I + + L M T NG +KK L F ++R G+IAI L+ GD L VR +
Sbjct: 602 IDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAKVRLTNGKQRI 661
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A++ GM I + +R + RNTRG + L GD++ D++
Sbjct: 662 ILATKLGMAICFNESDVRPMGRNTRGVRGISLAPGDRVIGADVL---------------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+ +L VSE G GKR + +++ G +K + + + +VG +
Sbjct: 706 -----APDCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGV----IVGVEVV 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPE 918
+ D++++L++ +G V R + I I + R GV + +LE K+ + I+V E
Sbjct: 757 RE---DQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEE 813
>gi|452210944|ref|YP_007491058.1| DNA gyrase subunit A [Methanosarcina mazei Tuc01]
gi|452100846|gb|AGF97786.1| DNA gyrase subunit A [Methanosarcina mazei Tuc01]
Length = 950
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/831 (42%), Positives = 538/831 (64%), Gaps = 35/831 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ P+ + +EM SYI Y+MSV++GRALPD RDGLKPVHRRILF+M+E G++ KP+KK A
Sbjct: 68 VTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKSA 127
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD+AVYD++VRM QDFSLRYPLI G GNFGSID D AAAMRYTE R+
Sbjct: 128 RIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRM 187
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E ML+ DI+++TV F PN+D S KEP +LPARLP LL+NG++GIAVGMATN+PPHN
Sbjct: 188 DRIAEEMLV-DIEKETVPFTPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 246
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D + LI NPE + EL+ + GPDFPTG I+G GI AY TGRG I +R
Sbjct: 247 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 306
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E++ L K R +I+ E+PYQ NK+ L+E IA+LV K ++GISD+RDESDR G+R+V+
Sbjct: 307 EIQEL--KKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVV 364
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL RG +P++V+N LY+ T + ++F + ++DG+PK++ LK++L+ +L++R ++++R
Sbjct: 365 ELSRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKR 424
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+ L + +ER H++EG+ + LDN+D V+ +++ + + A L D F L E QA AIL
Sbjct: 425 TLYDLRKSEERAHVLEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAIL 484
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M L+RLT LE +K +DE + L++QI +L ++L+S + ++I E+ ELK+++ R +
Sbjct: 485 EMRLQRLTGLETQKILDELEALVKQIEELRKILASDELKYEIIRTELSELKDKYGDIRRT 544
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ ++ + D D+IP +++++ I+ GY+KR+ +T+ +Q RG G +++ D +
Sbjct: 545 RIV-HNTENVTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFV 603
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ + H+++L+F++RG +Y + Y+IPE +R + G +V +L L +GE + ++I V
Sbjct: 604 ENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGKAIVNLLELQEGEMVNAMISVE 663
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EFA D++L M T G +KK L+ F + R GIIA+ L GDEL V + M S
Sbjct: 664 EFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGIIAVSLDEGDELVKVLLTDGKQEIMMVS 723
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I S + +R + R RG M L+ D++ S+D++
Sbjct: 724 KKGKAIRFSEEDVRPMGRTARGVRGMTLEGPDDEVVSLDLVDET---------------- 767
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF-SLAED 861
LL V+++G GKR S + P++R G G + L FV S+AED
Sbjct: 768 -----TTLLTVTDNGFGKRTEYSQY---PVHRRGGKGV-ITIVTNLRNGFVSNVKSVAED 818
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E ++ S G + RI +DISIQ R +GV +M ++ K+ + I
Sbjct: 819 DE----LMFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARI 865
>gi|418412793|ref|ZP_12986044.1| DNA gyrase subunit A [Staphylococcus epidermidis BVS058A4]
gi|410883854|gb|EKS31686.1| DNA gyrase subunit A [Staphylococcus epidermidis BVS058A4]
Length = 893
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L++ I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLKYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
Length = 871
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/859 (42%), Positives = 551/859 (64%), Gaps = 74/859 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++V N+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ I N + T+ EL+E++PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K ++E K+ + +++ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKADIET--DKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK--------- 489
VV RR F+L + +ER HI+EG+ + L N+D +I ++R+AP+ + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNV 419
Query: 490 -------------------------DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE KT
Sbjct: 420 AAMLERAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKT 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I +E+I +++ F R + + A S +D ++I +++
Sbjct: 480 LLDEIAELMIILASTERLMEVIREELIAVRDGFGDERRTEITAA-SHDIDLEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +RNA G P+V IL L +GERIT+I+PV +F D+F+ M T +G +KK
Sbjct: 599 YRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L F+++R G+IA+ L D L V T D + + S+ G V+ S D +R++ R
Sbjct: 659 LTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D D++ S+ I+PA + G +L V+++G+GKR L
Sbjct: 719 GVRGMKLNDDDQVVSL-IVPA-------------------NDGD-VLTVTQNGYGKRTQL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR----LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880
S + G++ K S DR + AV VV E DE +++++ +GT+ R
Sbjct: 758 SEYPVKGRATQGVVSIKVS--DRNGPVVGAVQVV--------EGDE-MMMITDAGTLVRT 806
Query: 881 KVRDISIQARYARGVILMR 899
+V ++S R +GV L+R
Sbjct: 807 RVAEVSQVGRNTQGVTLIR 825
>gi|59711811|ref|YP_204587.1| DNA gyrase subunit A [Vibrio fischeri ES114]
gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
ES114]
Length = 878
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/855 (41%), Positives = 545/855 (63%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ A I N E T+ EL+ Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K +E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKANIEA--DKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY LT LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ ++ L+E+QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +L+S + ++++I E++ +++ + R + + A +D D+I +++
Sbjct: 480 LLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEI-GAAIHDIDMEDLITQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKA 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
YS + +++P+ +R A G P+V IL L +GERIT+I+PVSE++ D+F+ M T +G +KK S
Sbjct: 599 YSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L+ F+ +R G+IA+ L D L V + + S+ G V+ + + +R + R
Sbjct: 659 LDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMGRTAS 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G M+L D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMKLSGEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTVL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G++ K S + VVG AEDG ++ ++++ +GT+ R +V +
Sbjct: 758 SEYPAKSRATQGVVSIKVSERNG----SVVGAVQAEDG---DEFMMITDAGTLVRTRVSE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|420186259|ref|ZP_14692331.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM040]
gi|394252624|gb|EJD97653.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM040]
Length = 893
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K ++GI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKINGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
Length = 818
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/824 (42%), Positives = 528/824 (64%), Gaps = 38/824 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V I+ E++ EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL+ MH LG++ KP
Sbjct: 7 VGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGITPDKPH 66
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR VGEV+ K+HPHGD+++YD++VRMAQDFS+RY L+ GHGNFGSI+ D AAAMRYT
Sbjct: 67 KKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAAAMRYT 126
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ L+ M L DID+ TV+FVPNFD+ ++EPS+LP+R P LL+NG++GIAVGMAT+I
Sbjct: 127 EARMSHLALQM-LRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGMATSI 185
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D LI + E +++EL + + GPDFPTG I+G GI + Y TG+G+I +
Sbjct: 186 PPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQGKIKI 245
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R ++E +K + +++ EIPYQ NK+ L+EKI ELV+ K ++GIS+IRDE+++ G+
Sbjct: 246 RSTIDIE--QTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNKEGI 303
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIELKR A+ SIV+N LY+ T+LQ S S M+ +++G+PK++ L ++L ++ + +
Sbjct: 304 RIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQKEI 363
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
V RR +F L + + R HI+EG+ + LDN+D +I+I+R S A L D F LSE Q
Sbjct: 364 VTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIR--SSYDDAKQKLMDTFSLSEVQT 421
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RL LER+K +E L ++I +E+LS+ ++ +I++E++E+K +++
Sbjct: 422 QAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNVIKEELLEIKEKYAD 481
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + D D+ +++ D+I + + ++ KGY KRM + + Q RG G + K R
Sbjct: 482 ERRTQIVDDDT-NIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQKRGGKGITGLKTRE 540
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
ND + + I HD +L+F++ G + +AY+IPE TR A G P++ ++L E IT++
Sbjct: 541 NDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIINFVNLDKTEEITAV 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
IP+ EF D++L+ +T G IKKV L+ F S R +G+IA++L GD+L + DD V
Sbjct: 601 IPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIAIEKTNGDDDV 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ ++ GM I + + +R+ R + G A+ LK D++ SM ++
Sbjct: 661 LIVTRKGMSIRFNENDVRATGRQSIGVKAITLKGDDEIISMQLV---------------- 704
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY---KFSAEDRLAAVFVVGF 856
S G LL VS+ G+GKR + G Y KF L +V
Sbjct: 705 -----SKGKELLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGALIV-- 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D E D ++L++ G V RIK ++I +R +GV +M++
Sbjct: 758 ----DEEDD--IMLINSDGIVIRIKAKEIPNLSRATKGVRIMKV 795
>gi|21228522|ref|NP_634444.1| DNA gyrase subunit A [Methanosarcina mazei Go1]
gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
Length = 900
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/831 (42%), Positives = 539/831 (64%), Gaps = 35/831 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ P+ + +EM SYI Y+MSV++GRALPD RDGLKPVHRRILF+M+E G++ KP+KK A
Sbjct: 18 VTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKSA 77
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD+AVYD++VRM QDFSLRYPLI G GNFGSID D AAAMRYTE R+
Sbjct: 78 RIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRM 137
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E ML+ DI+++TV F+PN+D S KEP +LPARLP LL+NG++GIAVGMATN+PPHN
Sbjct: 138 DRIAEEMLV-DIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D + LI NPE + EL+ + GPDFPTG I+G GI AY TGRG I +R
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E++ L K R +I+ E+PYQ NK+ L+E IA+LV K ++GISD+RDESDR G+R+V+
Sbjct: 257 EIQEL--KKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVV 314
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL RG +P++V+N LY+ T + ++F + ++DG+PK++ LK++L+ +L++R ++++R
Sbjct: 315 ELSRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKR 374
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+ L + +ER HI+EG+ + LDN+D V+ +++ + + A L D F L E QA AIL
Sbjct: 375 TLYDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAIL 434
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M L+RLT LE +K +DE + L++QI +L ++L+S + ++I E+ ELK+++ R +
Sbjct: 435 EMRLQRLTGLETRKILDELEALVKQIEELRKILASDELKYEIIRTELSELKDKYGDIRRT 494
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ ++ + D D+IP +++++ I+ GY+KR+ +T+ +Q RG G +++ D +
Sbjct: 495 RIV-HNTENVTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFV 553
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ + H+++L+F++RG +Y + Y+IPE +R + G +V +L L +GE + ++I V
Sbjct: 554 ENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGKAIVNLLELQEGEMVNAMISVE 613
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EFA D++L M T G +KK L+ F + R GIIA+ L GDEL V + M S
Sbjct: 614 EFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGIIAVSLDEGDELVKVLLTDGKQEIMMVS 673
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G I S + +R + R RG M L+ D++ S+D++
Sbjct: 674 KKGKAIRFSEEDVRPMGRTARGVRGMTLEGPDDEVVSLDLVDET---------------- 717
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF-SLAED 861
LL V+++G GKR S + P++R G G + L FV S+AED
Sbjct: 718 -----TTLLTVTDNGFGKRTEYSQY---PVHRRGGKGV-ITIVTNLRNGFVSNVKSVAED 768
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E ++ S G + RI +DISIQ R +GV +M ++ K+ + I
Sbjct: 769 DE----LMFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARI 815
>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
Length = 809
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/835 (42%), Positives = 536/835 (64%), Gaps = 33/835 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PV++ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAIEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N A+L ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R +++ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 ATIE--QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + +ER HI+EG+ LD++D +I I+R + + + A L F+ +E QA AI
Sbjct: 364 RTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +RS+ R +G M L+DGD + M+
Sbjct: 663 SSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + D+ +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGR--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG-KIQSASLISVTE 916
+++++L S G R++V I +Q R +GV LMR++ K+ S + I V E
Sbjct: 757 --EDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809
>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus DSM 785]
gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus DSM 785]
Length = 827
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/839 (42%), Positives = 536/839 (63%), Gaps = 38/839 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ PV + +EM +Y+ Y+MSV++ RALPD RDGLKPV RRIL+AM GL + KCA
Sbjct: 6 VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEVL K+HPHGD +VYD+LVR+AQ +++RYPL+ G GNFGS+D D AAA RYTE RL
Sbjct: 66 GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E LL DID+DTVNF PNFD +EP +LPARLP LLLNG++GIAVGMATNIPPHN
Sbjct: 126 KEIAEE-LLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL D + L+ NP+AT+++L++++PGPDFPTGG I+G GI+ AY +GRGRI +R K
Sbjct: 185 LGELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKA 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E ++ +++ E+PYQ NK+ L+E+IAELV++K ++GI D+RDESDRSG+R+VI
Sbjct: 245 HIE--EAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGIL-DG-QPKQMGLKEVLQAFLDFRCSVVE 441
LK+ A P V+N L++ T++Q++F NM+ ++ DG QP+ + LK+ LQ +++ R V+
Sbjct: 303 ILKQDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIR 362
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR L++ K R HI+EG+ + LD LD VI +R + + TA + L FKLSE Q+ A
Sbjct: 363 RRTEHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKNFKLSELQSQA 422
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRL LERKK DE K ++ I LE++LS + + ++I+ +V ELK ++ R
Sbjct: 423 ILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSKPERVFKIIKDDVAELKEKYGDVR 482
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S + +G + D+IP+ +L+ ++++GY+K++ +T+ +QNRG G + +D
Sbjct: 483 RSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLPGDTYRVQNRGGRGIKGMTTKEDD 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
++ ++C + +L+F++RG VY + +++P+ +R A G PLV ++SL GE +TS+I
Sbjct: 543 VVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRTAKGLPLVNLISLEPGELVTSLIA 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F ++LVM T+ G IK+ L+ +SS+R+ G+IAI L GDEL+WV+ D+ + M
Sbjct: 603 VPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGDEDILM 662
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+Q+G I S +R + R G + +++ D++ MD++ DS
Sbjct: 663 TTQHGQTIRFSQAEVRPMGRPASGVIGIKMSAKDQVVGMDLVRP-----------DSQ-- 709
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
LL ++ G GKR L + G+I + D +AA V+ S
Sbjct: 710 --------LLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGDIIAAALVLTDS---- 757
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+ V ++++G V R + IS R +GV ++ L+ + + S EP D
Sbjct: 758 ----DIVTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAVS----AEPPVD 808
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 24/229 (10%)
Query: 583 EMLLAISEKGYVKRMKPNTFN-LQNRGTI------GKSVGKLRVNDAMSDFIVCRAHDHV 635
E L+ + KG +KR K + ++ +++ G I G + ++ ++ D ++ H
Sbjct: 610 EYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGDEDILMTTQHGQT 669
Query: 636 LYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLT 695
+ FS ++ R A+G ++ +S D ++ + D L+++T
Sbjct: 670 IRFSQ---------AEVRPMGRPASGVIGIK-MSAKD-----QVVGMDLVRPDSQLLVIT 714
Query: 696 MNGYIKKVSLNLF--SSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSC 753
+G K+ L + T G+I ++L PGD + T+ D+V ++NG+V+ +
Sbjct: 715 SHGMGKRTDLEDYPVKGRATQGVITMRLKPGDIIAAALVLTDSDIVTTITRNGVVMRTRA 774
Query: 754 DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
D I R T+G + L D +A++ P K + DS V
Sbjct: 775 DKISKYGRTTQGVTVINLDKKDLVAAVSAEPPVDDKSDDSDANDSPGTV 823
>gi|420181841|ref|ZP_14688000.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM049]
gi|394250948|gb|EJD96079.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIHLM049]
Length = 893
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 542/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYQAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|420222777|ref|ZP_14727692.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH08001]
gi|420224634|ref|ZP_14729474.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH06004]
gi|420233033|ref|ZP_14737655.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH051668]
gi|394288731|gb|EJE32635.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH08001]
gi|394294484|gb|EJE38163.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH06004]
gi|394300593|gb|EJE44087.1| DNA gyrase, A subunit [Staphylococcus epidermidis NIH051668]
Length = 893
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 542/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|430751857|ref|YP_007214765.1| DNA gyrase subunit A [Thermobacillus composti KWC4]
gi|430735822|gb|AGA59767.1| DNA gyrase, A subunit [Thermobacillus composti KWC4]
Length = 826
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/829 (41%), Positives = 531/829 (64%), Gaps = 33/829 (3%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+S KP+KK AR+VG
Sbjct: 13 DISTEMRDSFLDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVG 72
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EV+GK+HPHGD AVY+++VRMAQDFSLRY L+ GHGNFGS+D D AAAMRYTE RL ++
Sbjct: 73 EVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEARLSKIA 132
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
ML DI+++T++FVPN+D +KEP++LPAR P LL+NG SGIAVGMATNIPPHNL E+
Sbjct: 133 MEML-RDINKETIDFVPNYDGEEKEPAVLPARFPNLLVNGVSGIAVGMATNIPPHNLTEV 191
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
++ + A+I NP+ T EL++++ GPDFPT ++MG GI AY TGRG IT+R + E+E
Sbjct: 192 INGIQAMIQNPDITPLELMDHVKGPDFPTAAIVMGREGIRQAYMTGRGSITMRARAEIEE 251
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
K + +I+ E+PYQ K+ LVEKIAELV K +DGI+D+RDESDR+GMRIVIEL+R
Sbjct: 252 QGGKPR---IIVHELPYQVIKARLVEKIAELVREKRIDGITDLRDESDRNGMRIVIELRR 308
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
+P++V+N+LY+ T +Q++F NM+ ++DG+PK + LK++L +L + +V+ RR +
Sbjct: 309 DVNPNVVLNNLYKHTPMQTNFGINMLALVDGEPKILNLKDMLYHYLQHQITVIRRRTEYD 368
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + + R HI+EG+ + LD++D +I ++R + + A L F LS QA AILDM L
Sbjct: 369 LRKAEARAHILEGLRIALDHIDEIIALIRGSRTTEEARDGLIARFSLSHDQAQAILDMRL 428
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
+RLT LER+K +E L++QI + + +L+ +LQ+I E+ E+K ++ R + +
Sbjct: 429 QRLTGLEREKIEEEYAELLKQIAEFKAILADEGRVLQIISDELEEIKQKYGDERRTEITS 488
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
+++ LD+ D+IP ++++++I+ GY+KR+ +T+ Q RG G + + +D +
Sbjct: 489 SENEILDE-DLIPREDVIISITHSGYIKRLPVSTYRSQKRGGKGVIGMETKEDDFVEHLY 547
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
V H ++L+F+D+G V+ +AY+IPE R A GTP++ ++ + GE I ++IP+ F
Sbjct: 548 VSNTHHYLLFFTDKGKVFRLKAYEIPELGRTARGTPIINLIQIEPGETINAVIPIESFDP 607
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
D +L T G +KK L+ +S+IR G+IAI L DEL V+ + M + GM
Sbjct: 608 DLYLFFATKQGIVKKTPLDDYSNIRKVGLIAINLREDDELISVKLTDGSREIIMGTSQGM 667
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807
I +R + R+ G ++L++GD + MD++ PE
Sbjct: 668 SIRFPEQEVRPMGRSATGVKGIQLEEGDTVIDMDVV----------DPEQD--------- 708
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQ 867
+L V+ G+GKR P S +R G+ + ++ VV + D DE
Sbjct: 709 --VLIVTAKGYGKRTPASEYRTQSRGGKGIKTLNITEKNG----SVVSLKMVAD---DED 759
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++++ +GT+ R + IS R +GV L+ + + + + +S E
Sbjct: 760 LMIMTSAGTLIRTSIAGISTMGRNTQGVKLINIREDDAVATVTRVSRAE 808
>gi|406968691|gb|EKD93494.1| hypothetical protein ACD_28C00140G0004 [uncultured bacterium]
Length = 875
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/875 (42%), Positives = 542/875 (61%), Gaps = 38/875 (4%)
Query: 48 PSRPPPSSRTPILASKDEERNGNGSVATVGPNV--SPRIVPVELH-------EEMTGSYI 98
P+ P TP A +E GN S T + +P+ + H +EM Y+
Sbjct: 2 PNDDLPEENTPSEAPDNENEAGNESPPTESQALEETPKTTLFDPHYRFKSISDEMEECYL 61
Query: 99 TYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGD 158
Y+MSV++ RALPDVRDGLKPVHRRIL+ MHE GL S +KK A VVGEVLGK+HPHGD
Sbjct: 62 DYAMSVIVSRALPDVRDGLKPVHRRILYVMHESGLRSTAKYKKSANVVGEVLGKYHPHGD 121
Query: 159 NAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQD 218
+AVYDS+VRMAQ FSLRYPL+ G GNFGSID D AAA RYTE R+ ++E +L DID++
Sbjct: 122 SAVYDSMVRMAQSFSLRYPLVDGQGNFGSIDGDSAAAYRYTEARMTKIAEELLF-DIDKE 180
Query: 219 TVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNP 278
TV++ N+D S+ EP +LP+++P LLLNG GIAVGMATNIPPHNLGELVD L A+I NP
Sbjct: 181 TVDWSENYDASRLEPRVLPSKIPQLLLNGTMGIAVGMATNIPPHNLGELVDGLIAIIKNP 240
Query: 279 EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVI 338
E T+++L+EY+ GPDFPT G+I I Y GRG I +R + ++E + K R +
Sbjct: 241 ELTVEDLMEYIKGPDFPTHGIIYDKEAIKAMYVNGRGGIVMRARAQIE--EMKGGRFQIR 298
Query: 339 IKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSL 398
+ EIPYQ NK+ L+EK+A+L +K + G+SDIRDES R+ +RI+IELK+ A P ++N L
Sbjct: 299 VSEIPYQVNKASLIEKMADLARDKKIVGMSDIRDESSRNEIRIIIELKKEAYPKKILNQL 358
Query: 399 YRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHI 457
++LT +Q+SF+ NM+ ++DG QP+ + LK+VL+ F++ R V+ RR + L K R HI
Sbjct: 359 FKLTPMQTSFNMNMIALVDGIQPRLLNLKQVLEYFIEHRKVVITRRTEYDLKIAKARAHI 418
Query: 458 VEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKK 517
+EG+ + LDN+D VI ++++ + AS AL+ +FKLSE QA AIL+M L+ L LER+K
Sbjct: 419 LEGLKIALDNIDSVIETIKKSKTKEDASEALQKKFKLSELQAQAILEMRLQTLAGLERQK 478
Query: 518 FVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID 577
DE M I +LE +L+ K +L ++E+E+ E+K ++ PR + + ++ D
Sbjct: 479 IEDEYIEKMALITELEGILADPKKVLHILEEELAEIKAKYGDPRRTEVVPHAVDEISQKD 538
Query: 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLY 637
IPN ML+ +S++ Y+KR+ P++F Q+RG G + D + HD +LY
Sbjct: 539 TIPNSPMLVMLSQENYIKRVAPDSFRRQHRGGKGIIGMTTKDEDEIRILRYVNNHDDLLY 598
Query: 638 FSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMN 697
F++RG V+ AY+IP+ +R A G +V +L L E +T+I+ E + ++L M T
Sbjct: 599 FTNRGRVFKLPAYEIPQTSRTAKGQAIVNLLQLQKDEWVTAILKEEEKSEGKYLFMGTNR 658
Query: 698 GYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIR 757
G +KK + F ++R TG+IAI+L DEL+WV+ + +D V M ++ G I + + +R
Sbjct: 659 GTVKKTPIEDFKNMRKTGLIAIKLREKDELEWVKETSGEDNVVMITREGKCIQFNENDVR 718
Query: 758 SLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESG 817
S+ R G +RLK D++ MD+I KG G LL ++E G
Sbjct: 719 SMGRTATGVRGIRLKGDDEVIQMDVI-------------------KGEHGD-LLVITEKG 758
Query: 818 HGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTV 877
GKR PL+++R G+ S + V L E+ E D +++VS+SG +
Sbjct: 759 MGKRTPLANYRAQGRGGSGVKTANLSPK---TGKVVGAEVLEENMEGD--LIVVSKSGQI 813
Query: 878 NRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
R+ + I + R +GV LMR+ + K+ S S++
Sbjct: 814 IRLPLTSIPNRGRATQGVYLMRMNTNDKVASISIM 848
>gi|418624196|ref|ZP_13186873.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU125]
gi|374827920|gb|EHR91770.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU125]
Length = 893
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDYVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
Length = 805
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/826 (42%), Positives = 534/826 (64%), Gaps = 41/826 (4%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K +KK AR+VGEV+GK
Sbjct: 1 MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD+AVY+S+VRMAQ+F+ RY L+ GHGNFGS+D D AAAMRYTE R+ +S L+
Sbjct: 61 YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKIS-MELI 119
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI++DT+++ N+D ++EP++LPAR P LL+NGASGIAVGMATNIPPH LGE++D L
Sbjct: 120 RDINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLL 179
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
AL N + T+ EL+E++ GPDFPT GLI+G GI AY TG+G I +R K E+E +
Sbjct: 180 ALSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIE--QKSN 237
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
+ +I+ EIPYQ NK+ L+EKIA+LV +K +DGI+D+RDESDR+GMRIVIE++R A+ +
Sbjct: 238 GKETIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANAN 297
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
+V+N+LY+ TALQ+SF NM+ ++DGQPK + LK+ L +LD + V+ RR ++L + +
Sbjct: 298 VVLNNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAE 357
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTM 512
R HI+EG+ + LD++D +I ++R + + A L +F LSEKQA AILDM L+RLT
Sbjct: 358 ARAHILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQFNLSEKQAQAILDMRLQRLTG 417
Query: 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQ 572
LER+K +E K L I +L +L+ + +L++I +E++E+K+RF+ R + +
Sbjct: 418 LEREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFNDVRRTEIVAGGIEN 477
Query: 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI----V 628
++D D+IP + +++ ++ GY+KR+ +T+ Q RG G+ V + ND DF+
Sbjct: 478 IEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRG--GRGVQGMGTND--DDFVEHLLY 533
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
HD +L+F+++G Y A+ Y+IPE R A G P++ +L + E I ++I + EF +
Sbjct: 534 TSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLGIEKDEWINTMIRIEEFDEE 593
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
+L T G K+ ++ F++IRT G+IAI L DEL V+ D + + ++NG++
Sbjct: 594 SYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDELISVKLTDGDKQILIGTKNGLL 653
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I +RS+ R G + L + D++ SM+II ED H
Sbjct: 654 IRFDEKDVRSMGRTATGVKGITLVNDDEVVSMEII-----------EEDDH--------- 693
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLAEDGESDEQ 867
+L +++ G GKR P S +R L G G K + D+ + V E E
Sbjct: 694 -VLVITKHGFGKRTPASEYR---LQSRGGKGLKTCNITDKNGPLVAVKSVTGE-----ED 744
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
++L++ G + R+ + ISI R +GV L+ L + +A+ ++
Sbjct: 745 LMLITVHGVLIRMDIHAISITGRNTQGVKLISLREEEYVATAAKVA 790
>gi|421858605|ref|ZP_16290870.1| type IIA topoisomerase [Paenibacillus popilliae ATCC 14706]
gi|410831901|dbj|GAC41307.1| type IIA topoisomerase [Paenibacillus popilliae ATCC 14706]
Length = 845
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/831 (42%), Positives = 538/831 (64%), Gaps = 35/831 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG++ KP+KK AR+VGEV+G
Sbjct: 17 EMRESFLDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMAPDKPYKKSARIVGEVIG 76
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE RL ++ L
Sbjct: 77 KYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDFAAAMRYTEARLSKIA-VEL 135
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
L DI++DTV+F PN+D ++EP +LPAR P LL+NG SGIAVGMATNIPPHNL E++D +
Sbjct: 136 LRDINKDTVDFAPNYDGEEREPIVLPARFPNLLVNGVSGIAVGMATNIPPHNLTEVIDGV 195
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
ALI NPE EL++Y+ GPDFPT GL++G GI AY TGRG +T+R + +E + K
Sbjct: 196 QALIRNPEIMPLELMDYIKGPDFPTAGLVLGREGIRQAYMTGRGSVTMRARATIEEHNGK 255
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +++ E+PYQ NK+ LVEKIAELV K ++GI+D+RDESDR+GMR+VIEL+R +P
Sbjct: 256 AR---ILVHELPYQVNKARLVEKIAELVREKRVEGITDLRDESDRNGMRVVIELRRDVNP 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
S+V+N+LY+ TALQS+F NM+ +++ +P+ + L+++L +L+ + V+ RR F L +
Sbjct: 313 SVVLNNLYKHTALQSNFGINMLALVNQEPRVLNLRDMLYYYLEHQVDVIRRRTEFDLKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ V LD+LD VI ++R + + A L + F+LS +QA AILDM L+RLT
Sbjct: 373 EARAHILEGLRVALDHLDEVIALIRSSRTADIAREGLINRFQLSVEQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER+K +E LM++I +L+E+L+S + +L +I E+ E+K ++ R + + +
Sbjct: 433 GLEREKIEEEYAELMKKIAELKEILASEQLVLNIINDELEEVKQKYGDERRTEITIGEDS 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP +++++ I+ GY+KR+ T+ Q RG G + ND + V +
Sbjct: 493 ILDE-DLIPQEDVIITITHSGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNS 551
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++++F+D+G VY +AY++P +R + GTP++ ++ + GE + ++IPV EF D+FL
Sbjct: 552 HHYLMFFTDKGKVYRIKAYEVPGLSRTSRGTPIINLIQIEQGEAVNAVIPVKEFEADKFL 611
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T G +KK L+ + +IR G+IAI L D+L VR + + M + NGM I
Sbjct: 612 FFATRYGIVKKTPLDDYVNIRKGGLIAINLREDDDLIGVRLTDGEQEIIMGTSNGMSIRF 671
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
+RS+ R+ G + + + D++ ED+ +L
Sbjct: 672 PEKDVRSMGRSATG-----------VKGITLDDDDFVIDMDVVSEDND----------VL 710
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAEDGESDEQVVL 870
VS G+GKR P+S +R + G G K + D+ V+G + + +E +++
Sbjct: 711 IVSSKGYGKRTPMSEYR---IQSRGGKGIKTINVTDKNGP--VIGLKVV---QPEEDLMI 762
Query: 871 VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
++ GT+ R+ + IS RYA+GV L+ + + + S E + ++
Sbjct: 763 ITSLGTIIRMSMAGISQMGRYAQGVKLINIREDDSVATVSRCDKNEEQDEM 813
>gi|357014911|ref|ZP_09079910.1| DNA gyrase subunit A [Paenibacillus elgii B69]
Length = 827
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/817 (42%), Positives = 536/817 (65%), Gaps = 35/817 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I +++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG++ KP+KK
Sbjct: 8 QIREIDIGSEMRTSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMAPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI+++T++FVPN+D ++EP++LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 LSKIA-MELLRDINKETIDFVPNYDGEEQEPAVLPARFPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ + LI NP+AT +L++ + GPDFPTGG IMG GI AY TGRG +T+R K
Sbjct: 187 NMIEVINGVQQLIENPDATPLDLMQSIKGPDFPTGGYIMGREGIKQAYATGRGSVTMRSK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E +K++ +I+ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 ATIEENGNKAR---IIVYELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+LY+ TA+QS+F M+ +++G+PK + L+++L +L+ + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLYKQTAMQSNFGIIMLALVNGEPKVLNLRDMLFHYLEHQKVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + + R HI+EG+ + LD+LD VI ++R + + A L + F LS QA AI
Sbjct: 364 RTEYDLRKAEARAHILEGLRIALDHLDEVITLIRSSRTAEQARDGLMERFGLSFDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L ++I + + +L+ + +L +I +E+ E+K +F R
Sbjct: 424 LDMRLQRLTGLEREKIEEEYAELQKKIAEFKAILADERLVLDIISEELNEIKEKFGDDRR 483
Query: 563 SMLE-DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S + DS ++D D+IP ++++ IS GY+KR+ +T+ Q RG G + ND
Sbjct: 484 SEITIGGDS--IEDEDLIPQTDVVITISHTGYIKRLPVSTYRSQRRGGKGVIGMDTKDND 541
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ V +H ++++F+D+G VY +AY+IP+ +R A GTP++ ++ + GE I ++IP
Sbjct: 542 FVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIP 601
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V F D++L T NG +KK L+ +S+IR G+IAI L D+L VR + + M
Sbjct: 602 VESFDSDKYLFFATKNGLVKKTPLDDYSNIRKGGLIAITLREDDDLIGVRLTDGNQSIIM 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ GM I +R++ R G ++L + D + MD++ H+D
Sbjct: 662 GTKQGMSIHFPEQEVRAMGRAATGVKGIQLDEDDAVIDMDVV----HED----------- 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L V+ G GKR P+S +R G+ + ++ VVG + +
Sbjct: 707 ------NSVLIVTSKGFGKRTPVSEYRLQSRGGKGIKTLNVTPKNGP----VVGLKIVRE 756
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
DE +++++ SGTV R + IS+ R +GV L+
Sbjct: 757 ---DEDLMIITASGTVIRTSMSGISLMGRNTQGVKLI 790
>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
gi|81672841|sp|Q5HK04.1|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
Length = 893
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 543/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++ +PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
Length = 809
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/832 (43%), Positives = 541/832 (65%), Gaps = 38/832 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I V++ ++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M EL L S +KK A
Sbjct: 11 IFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+++Y++ VR+AQDF++RYPL+ G GNFG+ID D AAAMRYTE ++
Sbjct: 71 RLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTEVKM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+E ML DI++DTV FVPNFD Q+EPS+LP+R P LL+NG+SGIAVGMATN+PPHN
Sbjct: 131 TKLAEEML-RDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D + I N + ++ EL E + GPDFPTG LIMG GI AY+TGRG+ITVR
Sbjct: 190 MNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGRGKITVRAVA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+ ++ K R ++I E+PYQ NKS LV KIAEL ++K +DGIS I D S++ G+RIVI
Sbjct: 250 EI--VEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
+LK+ A+ ++V+N LY+ T LQ ++ + +++G+P+ + LKE+++ ++D + V+ RR
Sbjct: 308 DLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQVEVITRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF L++ + R HIVEG+ + LDN+DRVI+I+R + + EF L++ Q+ AIL
Sbjct: 368 TRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E L+E I + +E+L + +++LI+ E++E+K+++ R +
Sbjct: 428 DMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+++ ++S +D DII +++++ +++ GY+KRM T+ Q RG G + + +D +
Sbjct: 488 VIKSSES-DIDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQKEDDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD +L+F+++G VY +A+++PE RNA GT +V +L+L GE+ITS+I V
Sbjct: 547 KELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVE 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF + +L+M+T G IKK S F +IR G+I I+L D+L V D+ + + +
Sbjct: 607 EFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVT 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I S D +R RNT G +M L + D + S DI+
Sbjct: 667 KEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTIVSSDIV-------------------- 706
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAED-RLAAVFVVGFSLAE 860
G +LL VSE+G GK L +R P NR G+ YK S + +++A VV S
Sbjct: 707 -GDGNYLLTVSENGFGKLTELKEYR--PQNRGGKGIFTYKISEKTGKVSAASVVNKS--- 760
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ ++L++ SG + R+ + DIS+ +R GV LM L S + A I
Sbjct: 761 -----DDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLNDSKVVAIAKYI 807
>gi|222528065|ref|YP_002571947.1| DNA gyrase subunit A [Caldicellulosiruptor bescii DSM 6725]
gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
Length = 809
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/835 (42%), Positives = 536/835 (64%), Gaps = 33/835 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIALEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N A+L ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E +R+ ++ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 ATIEQTSKGRQRL--VVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + +ER HI+EG+ LD++D +I I+R + + + A L F+ +E QA AI
Sbjct: 364 RTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + +G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTGKSGKKAITLADDDSLVDVKLTSGNDEIVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +RS+ R+ +G M L+DGD + M+
Sbjct: 663 SSNGYCVVFNENDVRSMGRSAQGVKGMTLEDGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + + +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTEK----TGRIVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG-KIQSASLISVTE 916
+++++L S G R++V I +Q R +GV LMR++ K+ S + I V E
Sbjct: 757 --EDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809
>gi|386318036|ref|YP_006014199.1| DNA gyrase subunit A [Staphylococcus pseudintermedius ED99]
gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
Length = 878
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/841 (41%), Positives = 550/841 (65%), Gaps = 38/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-LELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG + +R K
Sbjct: 187 NMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIESRGGGRDR--IVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LK+ L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I I+RE+ ++ A +L+ F LSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +L+L+ +E+ E+K +F R
Sbjct: 425 ILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ QL+D D+IP +++++ +S Y+KR+ +T+ QNRG G +D
Sbjct: 485 RTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V ++ L E I+++I
Sbjct: 545 FVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD--L 738
V + ++ FLV +T G IK+ +L+ F+ I G IAI+ DEL V C T+ + +
Sbjct: 605 VKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAV-CLTDGEKHI 663
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ +Q ++ D +R++SR G +RL+DGD++ +D+ +D
Sbjct: 664 LIGTAQASLIRFKETD-VRAMSRIAAGVKGIRLRDGDEVIGLDV------------ADDD 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
+ + +L V+E G+GKR + +R +G+ K + + RL + V
Sbjct: 711 NQD-------EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTV--- 760
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
E DE +++V+ G + R++V +IS+ R A+GV L+RL+ + + + + EP
Sbjct: 761 -----EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVK-KEP 814
Query: 918 E 918
E
Sbjct: 815 E 815
>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
Length = 878
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/839 (40%), Positives = 545/839 (64%), Gaps = 34/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-LELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG + +R K
Sbjct: 187 NMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIESRGGGRDR--IVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LK+ L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I I+RE+ ++ A +L+ F LSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +L+L+ +E+ E+K +F R
Sbjct: 425 ILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ QL+D D+IP +++++ +S Y+KR+ +T+ QNRG G +D
Sbjct: 485 RTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD VL+F+++G VY + Y++PE +R + G P+V ++ L E I+++I
Sbjct: 545 FVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV +T G IK+ +L+ F+ I G IAI+ DEL VR + +
Sbjct: 605 VKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + +I +R++SR G +RL+DGD++ +D+ +D +
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDV------------ADDDNQ 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
+ +L V+E G+GKR + +R +G+ K + + RL + V
Sbjct: 713 D-------EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTV----- 760
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E DE +++V+ G + R++V +IS+ R A+GV L+RL+ + + + + EPE
Sbjct: 761 ---EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVK-KEPE 815
>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
gi|385780288|ref|YP_005689453.1| DNA gyrase subunit A [Clostridium thermocellum DSM 1313]
gi|419721186|ref|ZP_14248377.1| DNA gyrase, A subunit [Clostridium thermocellum AD2]
gi|419726582|ref|ZP_14253604.1| DNA gyrase, A subunit [Clostridium thermocellum YS]
gi|125715071|gb|ABN53563.1| DNA gyrase, A subunit [Clostridium thermocellum ATCC 27405]
gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
gi|380770179|gb|EIC04077.1| DNA gyrase, A subunit [Clostridium thermocellum YS]
gi|380782886|gb|EIC12493.1| DNA gyrase, A subunit [Clostridium thermocellum AD2]
Length = 827
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/840 (42%), Positives = 537/840 (63%), Gaps = 48/840 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PV + EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AM+ LG + K ++KC
Sbjct: 11 RIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLGFTPDKAYRKC 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VGEVLGK+HPHGD AVYDSLVRMAQ+FSLRY I GHGNFGSID DP AAMRYTE R
Sbjct: 71 ATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDPPAAMRYTEAR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S M L DI++DTV+F PNFDE EP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 131 LSKISMEM-LRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 189
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +I +P TL EL++ + GPDFPT G+I+G GI DAY TG+G+I VR
Sbjct: 190 NLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDAYATGKGKIIVRAV 249
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + +R +++ E+PYQ NK+ L+E+IAELV+ K +D ISD+RDESD+ GMRIV
Sbjct: 250 ATIEQMPGNKQR--IVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDESDKDGMRIV 307
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGIL-----DGQPKQMGLKEVLQAFLDFRC 437
IELK+ A+ ++V+N LY+ T +Q +F+ NMV ++ +P+ + L++ + ++ +
Sbjct: 308 IELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAIDYYIKHQE 367
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR +F L + + R HI+EG+ + +DNLD VI I+R + + S A AL F SEK
Sbjct: 368 DVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALIQRFGFSEK 427
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AI+DM L RLT LER+K +E K L+++I +++L+++ +L +I++E+ E+K ++
Sbjct: 428 QAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKKELEEIKQKY 487
Query: 558 STPRLS-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK 616
R + ++ D D +++ D+I +E ++ ++ GY+KR+ +T+ Q RG GK V
Sbjct: 488 GDERRTKIIPDEDEIEIE--DLIEVEENVVTLTHFGYIKRLPTSTYKSQKRG--GKGVIG 543
Query: 617 L--RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
L R D + + HD++L+F+++G VY + Y+IPE R A GT +V +L L E
Sbjct: 544 LSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKGTAIVNLLQLDQNE 603
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
+IT++IP+SE+ +L M T +G +KK L F +IR G+ A+ L DEL VR
Sbjct: 604 KITTVIPISEYKEGLYLFMATKHGIVKKTDLMEFDNIRKGGLTAVSLRENDELIDVRLTD 663
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+ + ++NGM I + +R L R +G + L++ D++ M
Sbjct: 664 GTKNILLVTRNGMSIRFNEKDVRPLGRAAQGVKGITLEEDDEVVGM-------------- 709
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
++++ +S +L V+E G GKR L ++ G++ Y+ + + A
Sbjct: 710 ----SADIENAS---VLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTEKTGKVA---- 758
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G L + D+ V+++S G++ RIK +DIS+ R +GV LMR++ + S++SV
Sbjct: 759 GMKLVSE---DDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMD-----EGVSVVSV 810
>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium succinatutens YIT
12067]
gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium succinatutens YIT
12067]
Length = 816
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/840 (42%), Positives = 538/840 (64%), Gaps = 33/840 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + +++PV + EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G++ KP
Sbjct: 5 NTTGKVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKP 64
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+VLGK+HPHGD +VYD++VR+AQDFS RY ++ GHGNFGSID D AAMRY
Sbjct: 65 YKKSARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRY 124
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++EAM L DI++DTV+FVPN+DES KEPS+LP+++P LL+NG++GIAVGMATN
Sbjct: 125 TEVRMAKIAEAM-LEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATN 183
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ L LI NP+ + +L+ + GPDFPTG I+G GI AY TGRG +
Sbjct: 184 IPPHNLCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVK 243
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RS 377
+R K E+ + + + ++I EIPYQ NK+ L++ IA L ++ ++GI+ + D S +
Sbjct: 244 IRAKAEI--VPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKD 301
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GM+IV+ELK A P +V+N LY+ TALQSSF M+ +++GQP+ + LK+VL+ +L+ +
Sbjct: 302 GMKIVVELKSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQK 361
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR R++L + K+R HI+EG+ + LDN+D VI +R + + A AL + FKLS++
Sbjct: 362 DVITRRTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMENFKLSQR 421
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LERKK +E L+E I LE +L+ ++ +I++++ E+K RF
Sbjct: 422 QAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLESVLADEHKVMNIIKEDLQEMKKRF 481
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNR-GTIGKSVGK 616
R + + DS ++D D+I +++++ IS +GY+KR + F Q R G
Sbjct: 482 GDERRTEIS-IDSSEMDIEDLIAEEDIVVTISHQGYIKRQTLDNFRSQKRGGVGKTGGSG 540
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
+++D+ + H ++L+F++RG VY + Y+IPE +R A GT ++ +L+L GE+I
Sbjct: 541 KKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIPEASRTAKGTAIINLLALMPGEKI 600
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
T++IPV EF +Q++ M T G +KK++L S+R G+IAI L ++L V +
Sbjct: 601 TAVIPVKEFREEQYMFMATNKGTVKKINLKDLESVRKNGMIAINLDDDEDLIGVELTDGN 660
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +A++NG+ I +R++ R G + L GD++ +MD + + E
Sbjct: 661 SEIILATRNGIAIRFDEQDVRTMGRTAHGVKGISLNYGDEVVAMDSV----------SDE 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS +L +E G GKR + +RK G+I K + + L V+G
Sbjct: 711 DSE----------VLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITEKTGL----VIGM 756
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ D+++++++ +G + R V IS R +GV LM L K+ S + I E
Sbjct: 757 KVI---NPDQEIMMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEE 813
>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
Length = 833
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/831 (41%), Positives = 528/831 (63%), Gaps = 33/831 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ P + +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL++M++LG+ S KP+KK
Sbjct: 6 QVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+ K+HPHGD++VYD++VRMAQDFS RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 66 ARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ M+ DI+++T++F PNFD + EP +LPAR P+LL+NG +GIAVGMATNIPPH
Sbjct: 126 MSKLAMEMM-RDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ A + NPE + L+E++ GPD PTG LI+G GI +AY TG G I +R K
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+ ++ + +++ EIPYQ N+ L+EKIAELV+ K LDGI+D+R+ES+R G RIV
Sbjct: 245 CEI--IEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL++ +P +++N+L++LT LQ S+ NM+ + DGQPK + LKE++ A++ + V+ R
Sbjct: 303 IELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L++ ++R HI+EG + LD++DR+I I+R + ++ A L EF SE+Q AI
Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M LRRLT LER K DE + L+ I L+++L++ + +I E+ E+ + R
Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEVMIKHGDDRR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++D D+IP +++++ ++ GY+KR +T+ QNRG G +D
Sbjct: 483 TEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGMGTHDDDY 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + + HD++L+F+++G VY +AY IPE R A G P+V I+ ++ E I++IIPV
Sbjct: 543 VKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPIVNIIEIAQDEEISAIIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF ++FL T G +K+ +L+ F +IRT G+IA+ L DEL VR T + + +A
Sbjct: 603 KEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALSLREDDELIGVRKTTGSNDIVIA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S G ++ D +RS+ R G + L++G+ M+I+ ED
Sbjct: 663 SSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVAVGMEIV-----------TEDQE--- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L VSE G GKR P+S +RK G+ + ++ L A+ V
Sbjct: 709 -------ILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVAMKTV------T 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
GE D +++V+ G + R + IS R +GV L+RL + S +L+
Sbjct: 756 GEED--LLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804
>gi|377832541|ref|ZP_09815499.1| DNA gyrase, A subunit [Lactobacillus mucosae LM1]
gi|377553733|gb|EHT15454.1| DNA gyrase, A subunit [Lactobacillus mucosae LM1]
Length = 836
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/861 (41%), Positives = 558/861 (64%), Gaps = 45/861 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 9 RITDVNLTGLMKNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GKFHPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F N+D S+KEP++LPAR P LL+NGASGIAVGMATNIP H
Sbjct: 129 MSKIAVEML-RDINKNTVDFQDNYDGSEKEPTVLPARFPNLLVNGASGIAVGMATNIPTH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + L+ NP+AT +EL++ +PGPDFPTGG++MG GI AY TGRG I VR K
Sbjct: 188 NLGEVIDAIHLLMQNPDATTEELMKVLPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E ++K+ R +++ EIPY NK+ L+E+IAEL K ++GI+DI DE+DR GMR+V
Sbjct: 248 VDIE--EAKNGRQRIVVHEIPYMVNKARLIERIAELAREKEIEGITDINDETDREGMRVV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A +++N+LY++T +Q++F+ NM+ I++G PK + LK++LQ +L+ + +VV R
Sbjct: 306 IDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKVLSLKQILQHYLEHQINVVRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HIV+G+++ LD++D +I+I+REA ++ A L D + L ++QA AI
Sbjct: 366 RTEFDLKKAQSRDHIVQGLLIALDHIDEIIKIIREAQTSEIAKEQLIDRYTLDDRQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K +E + L E I +++L+ + I Q+I E++E++ +F PR
Sbjct: 426 LDMRLVRLTGLEREKIENEHQKLTEAIADYQDILAHEERINQIIYDELLEIQRKFGDPRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L+ D ++D D+I +++++ ++ GY+KR+ + F QNRG G + +D
Sbjct: 486 TELQVGDITDIEDEDLIEEEDIVVTLTHNGYIKRLPVDEFKSQNRGGRGVKGMGVHKDDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F++ G V+S + Y++PE R+A G P++ +L + + E+IT++I V
Sbjct: 546 IEHLISSSTHDILLFFTNSGKVFSMKGYEVPEYGRSAQGIPIINLLGIDNHEKITAVINV 605
Query: 683 SEFAG--DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
S A D+FL +T G +KK S++ F +IR+ G+ AIQL GDEL V +
Sbjct: 606 SNAADDTDKFLFFVTKQGTVKKTSVDDFRNIRSNGLKAIQLHDGDELIHVNIIDGQQNMI 665
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ G + + + +RS+ R+ G +L++GD +I AA P DS
Sbjct: 666 LGTRLGYAVSFNAEDVRSMGRSAAGVRGAKLREGDC-----VIGAA--------PLDSDC 712
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGF 856
NV +SE+G GK+ P + + P+ G G K +A++ LA + V
Sbjct: 713 NV--------FVISENGFGKQTPAAEY---PIKGRGGKGIKTVNVTAKNGPLAGLTTV-- 759
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ DE ++LV+ G + R + +S R A GV L+R++ K+ + + ++ E
Sbjct: 760 ------KGDEDIMLVTDKGVIIRFGIETVSQTGRAAVGVHLIRMDDDSKVATMAKVA-KE 812
Query: 917 PETDL---FLPSTSDKLATES 934
+TD LP+ D A+E+
Sbjct: 813 DQTDQDDDALPAEEDSAASET 833
>gi|403669916|ref|ZP_10935092.1| DNA gyrase subunit A [Kurthia sp. JC8E]
Length = 830
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/822 (42%), Positives = 528/822 (64%), Gaps = 31/822 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N P + V + + + +++ Y+MSV++ RALPDVRDGLKPV RRIL+ M ELG +S KP
Sbjct: 4 NNKPGVKGVNITKTIKTAFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMQELGSASDKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRY
Sbjct: 64 YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S ML DI+++T+++ N+D ++KEP +LPAR P LL+NGASGIAVGMATN
Sbjct: 124 TESRMSKISMEML-RDINKNTIDYKDNYDGNEKEPVVLPARYPNLLVNGASGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH LGE++D + A+ NP T +EL+E +PGPDFPTGG+I+G GI AY TGRG I
Sbjct: 183 IPPHQLGEVIDGVLAISENPAITTEELMEIIPGPDFPTGGIILGRSGIRQAYETGRGSIL 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E + S + ++I E+PYQ NK+ L+EKIAELV +K +DGI++IRDESDR+G
Sbjct: 243 VRAKVEIE--ERPSGKEVIVIHELPYQVNKAKLIEKIAELVRDKKIDGITNIRDESDRNG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+ I++++ A+ ++V+N+L++ TA+QSSF N + +++GQP+ + LKE L +L+ +
Sbjct: 301 MRVTIDVRKDANGNVVLNNLFKQTAMQSSFGINTLALVNGQPQTLSLKECLYHYLEHQKE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F+L + ++R HI+EG+ + LD++D++I ++R + + A L ++F LSE+Q
Sbjct: 361 VIRRRTEFELKKAEDRAHILEGLRIALDHIDQIIALIRGSQTADVAKRGLVEQFSLSERQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER K E LM I KL +L+ I+++I E+IE++ +F+
Sbjct: 421 AQAILDMRLQRLTGLERDKIEAEYNELMALINKLRSILADEAKIIEIIHTELIEIREKFN 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + +G ++D D+IP + +L ++ GY+KR+ NT+ Q RG G
Sbjct: 481 DARRTEIVAGGAGMIEDEDLIPRENSVLTLTHNGYIKRLPANTYRSQRRGGRGVQGMGTH 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + + HD +L+F+ +G + A+ Y+IPE R A G P+V +L++ E++T+
Sbjct: 541 SDDFVEHLLYTSTHDTILFFTSKGKTFKAKGYEIPEFGRTAKGLPIVNLLNVDKEEKVTA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V + D + + T G K+ SL+ F++IRT G+IA+ L DEL VR
Sbjct: 601 MIRVPSYEEDAYFIFTTRTGVTKRTSLSQFANIRTNGLIAVSLREDDELIAVRLTDGTKD 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NGM++ IR + R G +RLK D + M+I LE E
Sbjct: 661 IVIGTRNGMLVRFKESDIRPMGRTAGGVRGIRLKGDDYVVGMEI--------LEENQE-- 710
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+L V+E+G+GKR +R VG+ + + D+ + V +
Sbjct: 711 -----------VLVVTENGYGKRTGEEEYRLQTRGGVGIKTCQIT--DKNGPLVAVKTVI 757
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E V+L++ +G + R+ V DIS+ R +GV L+RL
Sbjct: 758 GE-----EDVMLITDNGMLIRMDVADISVIGRSTQGVRLIRL 794
>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
Length = 820
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/819 (42%), Positives = 531/819 (64%), Gaps = 29/819 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL M+E+GL++ +P++K
Sbjct: 6 RLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A++VGE++G +HPHGD+A+YD+LVRMAQ+F++RY L+ G GN+GS+D D AAAMRYTE R
Sbjct: 66 AKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+E LLADI+++TV+F PN+DES+ EP +LP+R+P LL+NGA GIAVG ATNIP H
Sbjct: 126 LTKLAEE-LLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPTH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+++ L L+ NPE T+ +L++ +PGPDFPT G I G GI DAY TGRG +TVR K
Sbjct: 185 NLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E D ++ R +II EIPYQ NKS L+EKIA+L + + GISDIRDESDR G+R+V
Sbjct: 245 VAIET-DERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRVV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR P +V+N+LY+ + LQ++F NM+ +++ +P+ + LK +L+AF++ R VV R
Sbjct: 304 IELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVVVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + +ER HI+EG+ + LDNLD VI ++R + S A L +F+LSE QA+AI
Sbjct: 364 RTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQFRLSEIQANAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L+RLT LER K V+E + +++ I L +L S + ++I E+ E+K ++ R
Sbjct: 424 LEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSEALVRKIIRDELTEIKEKYQDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ +L D+I +E+++ IS GY+KR + Q RG GK ++ D
Sbjct: 484 TKIVKEEA-ELTLEDLIAEEEVVVTISHAGYIKRNAVTLYRAQRRGGKGKIAMGIKEEDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ HD +L+F+D G VY + ++IPE +R A G LV +L+LS E++T+ +PV
Sbjct: 543 VETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAKGKALVNLLALSKDEKVTATLPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
E+ D+F++M T G IKK L+ +S+ R GIIA+ L GD+L V + +
Sbjct: 603 KEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIGVDLTDGQREILLG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I + +R++ R G + L+ GD++ M+ I TP+ + +
Sbjct: 663 TKQGITIRFKEEDVRAMGRTAHGVRGITLEPGDEVIGMETI----------TPDSTTA-- 710
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+E G+GKR P++ +R G+I K + + A VGF D
Sbjct: 711 -------ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERNGPA----VGFLQVRD- 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+++++L++ G V R KV DI R +GV L+ ++
Sbjct: 759 --EDEIMLMAAQGKVLRCKVDDIREIGRNTQGVRLLDMD 795
>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
Length = 850
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/858 (41%), Positives = 549/858 (63%), Gaps = 36/858 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P +L + M S++ YSMSV++ RALPDVRDGLKPVHRRIL+ MHELG++ KP KK AR+
Sbjct: 16 PTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDKPHKKSARI 75
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+V+GK+HPHGD+A+YD++VRMAQDFS RYPLI GHGNFGS+D D AAMRYTE R+
Sbjct: 76 VGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMRYTEARMSK 135
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++ ML DI++DT+N+ N+D +++EP +LP+R+P LL+NGA+GIAVGMATNIPPH+LG
Sbjct: 136 IALEML-RDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATNIPPHHLG 194
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E++ L L+ NP+ T EL+E +PGPDFPTGG+++G GI AY TGRG ITVRG+ ++
Sbjct: 195 EVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRAYETGRGSITVRGRVQI 254
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E L + +R +II E+PY NK+ LVE+I++L K ++GI+ + DESDR GMR+VIE+
Sbjct: 255 EELKNGKER--IIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGMRVVIEV 312
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
+R S+V+N+LY+LT LQS+F NM+ I+ +PK + LKE+L+ +L+ + V+ RR+
Sbjct: 313 RRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRHYLNHQEEVIRRRSI 372
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+ + ++R HI+EG+ V LD++D ++ I+R + S A +E+ LS+KQA AILDM
Sbjct: 373 FEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYGLSDKQAQAILDM 432
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
+ RLT LER+K E L I +L E+L+S + ++IEQE++E++ +F PR + L
Sbjct: 433 RMVRLTGLEREKIDAEYADLQALIKELNEILASEERRYEIIEQELLEIQQKFDNPRRTEL 492
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
++ L+D D+I +++++ +++ GY+KR+ + F Q RG G + +D + +
Sbjct: 493 LVGEALSLEDEDLIEQEDVVITLTKNGYIKRLANSEFKTQRRGGRGVQGMSVHDDDFVEN 552
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
I C HD +L+F++ G VY A+ Y+IPE +R A G P++ +L++ E+I +II V E
Sbjct: 553 MISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDSTEKIQAIISVPES 612
Query: 686 -AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
++FL T+ G +K+V L+ F +IRT G+ AIQL D+L V + D + + +
Sbjct: 613 DETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLREDDQLIRVVVTSGQDGIILGTY 672
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+G + + +R++ R G + L+D D + MDI+ TPE
Sbjct: 673 HGNAVTFHEEKVRAMGRTAAGVRGVSLRDDDYVIGMDIL----------TPERE------ 716
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGE 863
+L VSE G+GKR S + G+ + + ++ L + V GE
Sbjct: 717 -----VLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLVCLRTV------TGE 765
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFL 923
D +++++ G + R D+S R A GV +MRL+ + S +++ E E + +
Sbjct: 766 ED--LMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVD-REEEAEETV 822
Query: 924 PSTSDKLATESGVSEMLQ 941
S+ + + +E V+E LQ
Sbjct: 823 TSSEETVVSEK-VTENLQ 839
>gi|395646372|ref|ZP_10434232.1| DNA gyrase, A subunit [Methanofollis liminatans DSM 4140]
gi|395443112|gb|EJG07869.1| DNA gyrase, A subunit [Methanofollis liminatans DSM 4140]
Length = 815
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/841 (41%), Positives = 539/841 (64%), Gaps = 39/841 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++ V + EM SYI Y+MSV++GRA+PDVRDGLKPVHRRIL+ M E+G++ KP KK A
Sbjct: 12 VIQVTVENEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRILYGMWEMGITHDKPTKKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
+VG V+GK+HPHGD ++YD+LV+MAQ FS RY + G GNFGSID D AAAMRYTE RL
Sbjct: 72 SIVGHVMGKYHPHGDASIYDTLVKMAQPFSYRYMPVEGQGNFGSIDGDSAAAMRYTEARL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+EA +L DI+++TV+F+PNFDES KEP++LPA++P LL+NG+SGIAVGMATN+PPHN
Sbjct: 132 NPLAEA-VLEDIEKETVDFIPNFDESTKEPTVLPAKVPNLLINGSSGIAVGMATNMPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+ D LCA I NP +++L++++P PDFPTGG+IMG G+ +AY TGRG++ +RG
Sbjct: 191 LGEVCDALCAYIDNPSIGVEDLMQHIPAPDFPTGGMIMGTAGVREAYLTGRGKVIMRGVA 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + +II EIPYQ NK+ LVE+IA LV K ++GISD+RDESD+ G+R+V+
Sbjct: 251 EIE---EEGRTPRIIISEIPYQVNKANLVEQIATLVREKRIEGISDLRDESDKDGIRVVV 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +V+N +Y+ T L+S+F N + I+DG+P + L ++++ FLD R VV RR
Sbjct: 308 ELKRDAMPQVVLNQIYKHTPLESTFGINNLAIVDGKPLTLSLPQIMEHFLDHRIEVVRRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++F+L + +ER HI+ G+++ L ++D V+ +R + S A L F L E QA+AIL
Sbjct: 368 SQFELRKAQERVHILNGLILALQSIDDVVAAIRASQSAEEARETLIARFGLDEVQANAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
M LRRL LE++K DE L ++I +L+E+LS+R+ I++ I +++ L+ +F R +
Sbjct: 428 QMQLRRLAALEQQKITDERTGLQKEIERLQEILSTRETIVREIRSDIVGLREQFGDERRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ A +G++ D+I + +L++++ Y+KRM + +Q+RG G + +D +
Sbjct: 488 QIVPA-AGEICKEDLIEDKPVLVSLTATNYIKRMPLEAYRMQHRGGKGVIGMATKEDDVV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
SD V HD++L F+++G +Y + Y IPE +R A G +V +L+L+D E ++++IP+
Sbjct: 547 SDVFVASTHDYLLCFTNKGRIYWMKVYDIPESSRTAKGKAIVNLLNLND-ELVSAVIPLR 605
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F ++L T G + K+ + FS R +GI+AI+L GDEL V+ V + +
Sbjct: 606 KFDTGEYLFFATKEGMVVKIPVEEFSRPRPSGILAIKLKEGDELMDVKLTDGSTEVLLTT 665
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G + S + +R L RN++G + +R++ GD + S+ ++
Sbjct: 666 WKGQSLRFSEEAVRPLHRNSQGVIGIRMRGGDHLVSLSLV-------------------- 705
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S LL ++ G GKR FR +G+ + + D + A V
Sbjct: 706 --SKDHLLTITAGGMGKRTEFDEFRGHGRGTMGVRNIQPAYGDGVVAAKAVS-------- 755
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFL 923
D++++L+S +G V R+ V ISIQ R RGV LM+++ ++ + I+ P+ ++
Sbjct: 756 DDDEIILMSTAGNVIRMTVGGISIQKRGTRGVRLMKMDEGDRVVGFAAIN---PDDEIET 812
Query: 924 P 924
P
Sbjct: 813 P 813
>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
Length = 809
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/819 (42%), Positives = 530/819 (64%), Gaps = 32/819 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAIEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + ++ N ATL ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + R +I+ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 TSIE--QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + ++ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEIIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + +ER HI+EG+ LD++D +I I+R + + + A L F+ ++ QA AI
Sbjct: 364 RTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R +D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + D V +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSDEVVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S NG ++ + + +R + R+ +G M L+DGD + M+
Sbjct: 663 SSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ Y+ + D+ +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVT--DKTGK--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++++++ S G R+++ + +Q R +GV LMR++
Sbjct: 757 --EDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRID 793
>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
gi|225203551|gb|EEG85905.1| DNA gyrase, A subunit [Proteus penneri ATCC 35198]
Length = 881
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/856 (41%), Positives = 544/856 (63%), Gaps = 66/856 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 9 DIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 68
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGS+D D AAAMRY
Sbjct: 69 YKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 128
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D ++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 129 TEVRMAKIAHE-LLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVGMATN 187
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A + N + T++EL+E++ GPDFPT +I G GILDAYRTGRG+I
Sbjct: 188 IPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDAYRTGRGKIY 247
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + ++E D K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 248 IRAQADIE-TDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDG 306
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+KR A +V+N L+ T +Q SF NMV + GQPK + LKE++ AF+ R
Sbjct: 307 MRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIISAFIRHRRE 366
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR ++L + ++R HI+E + V L N+D VI ++R+AP+ + A AAL
Sbjct: 367 VVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQPWDLGSV 426
Query: 489 -------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++ L+E+QA AILD+ L++LT LE +K +DE +
Sbjct: 427 STMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYR 486
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
L+ QI +L +L S + ++++I +E+ +K++++ PR + + + ++ ++ D+I +
Sbjct: 487 DLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITE-NTADINIEDLINEEN 545
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG
Sbjct: 546 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGR 605
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ +F+ M T +G +KK
Sbjct: 606 LYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGKFVFMATASGTVKKT 665
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
L FS R+ GIIA+ L GDEL V + + V + S +G V+ + D +R + R
Sbjct: 666 PLQDFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPMGRTA 725
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
G M+L D DK+ S+ IIP +G +L V+E+G+GKR
Sbjct: 726 TGVRGMKLSDDDKVVSL-IIP------------------RGDGD--ILTVTENGYGKRTA 764
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
S + G+I K S + VVG A E +Q+++++ +GT+ R +V
Sbjct: 765 QSEYPTKNRATQGVISIKVSERNGK----VVG---AIQVEETDQIMMITNAGTLVRTRVS 817
Query: 884 DISIQARYARGVILMR 899
++SI R +GV L+R
Sbjct: 818 EVSIVGRNTQGVTLIR 833
>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
Length = 885
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/858 (42%), Positives = 548/858 (63%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I N + T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E + K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIE--EDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ LK++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D VI +++ AP+ + A L
Sbjct: 360 VVTRRTIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E+QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ ++ + R S + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVITEELELVQATYGDERRSEI----TAAVHDIDMEELIAR 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P +R A G P+V IL L +GERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ FS++R G+IA+ L D L V + + S+ G V+ S D +R++ R
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L D D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TAAGVRGMKLADEDQVVSL-IVP--------------------SNQGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L + G++ K S + VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELEEYPTKGRATQGVVSIKVSERNGP----VVGAIQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
>gi|344995340|ref|YP_004797683.1| DNA gyrase subunit A [Caldicellulosiruptor lactoaceticus 6A]
gi|343963559|gb|AEM72706.1| DNA gyrase, A subunit [Caldicellulosiruptor lactoaceticus 6A]
Length = 809
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/835 (42%), Positives = 535/835 (64%), Gaps = 33/835 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSRIALEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N ATL ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T +E + R +I+ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 TTIE--QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R R+ L + +ER HI+EG+ LD++D +I I+R + + + A L F+ +E QA AI
Sbjct: 364 RTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+ I + +L+S + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I E ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D V H ++L+F+D+G V+ RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + +L+M T NG IKKV L+ F + G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S +G ++ + + +R + R+ +G M L+ GD + M+
Sbjct: 663 SSSGYCVVFNENDVRVMGRSAQGVKGMTLESGDFIVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K + G +LL V+E+G GKR + +RK G++ YK + D+ +V + D
Sbjct: 702 KANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGK--IVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL-SGKIQSASLISVTE 916
D+++++ S G R++V + +Q R +GV LMR++ S K+ S + I E
Sbjct: 757 --DDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDGDSIKVSSIARIKAEE 809
>gi|336233224|ref|YP_004589970.1| DNA gyrase subunit A [Buchnera aphidicola (Cinara tujafilina)]
gi|335345165|gb|AEH39711.1| DNA gyrase, subunit A [Buchnera aphidicola (Cinara tujafilina)]
Length = 823
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/839 (42%), Positives = 543/839 (64%), Gaps = 42/839 (5%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++ I V + EE+ SY+ YSMSV++GRALPDVRDGLKPVHRRILFAM+ L KP
Sbjct: 3 DLEANITQVNIEEELKKSYLDYSMSVIIGRALPDVRDGLKPVHRRILFAMNILHNEWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD++VRMAQ FSLRY LI G GNFGSID D AAAMRY
Sbjct: 63 YKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQSFSLRYTLIDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +++ ML+ D+++DT N+V N+D ++K P +LPA++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAQEMLI-DLEKDTTNYVLNYDGTEKIPEILPAKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + +L+ L+ Y+PGPDFPT G+I LGI +AYRTG+G+I+
Sbjct: 182 IPPHNLHEVINGCLAYIDDHNISLKNLMSYIPGPDFPTAGIINNQLGIEEAYRTGKGKIS 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K +E ++ K+KR +II E+PYQ NK+ L+EKIA L+++K +DGIS IRDESD+ G
Sbjct: 242 IRSKYTIE-VNKKNKREAIIIHELPYQVNKAKLIEKIALLIKDKKIDGISAIRDESDQDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRI+IE+K+ IV+N LY LT+LQ SF NMV + GQPK M LK +++AF+ R
Sbjct: 301 MRILIEIKKEFITKIVLNQLYTLTSLQISFGFNMVALSSGQPKTMTLKGIIKAFIQHRID 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------- 491
+V RR F+L + K+R H+++G + L+N+D++I+I++ + ++ +A L+ +
Sbjct: 361 IVTRRCIFELKKSKKRIHLLQGFSIALENIDQIIQIIKNSENSKSAKIFLEKKIGSLRIK 420
Query: 492 ----FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIE 547
K S+ QA+AILD+ L +LT LE K ES L ++I L+E+LSS K ++++I+
Sbjct: 421 KGKRIKFSKTQANAILDIRLNKLTSLETYKIEQESMILHQEINHLKEILSSPKKMMKIIK 480
Query: 548 QEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNR 607
E+I++K FS PR + + + S +++ D+I + +++ +S GYVK + +N Q R
Sbjct: 481 NELIDIKKNFSDPRRTKIINK-SSKINLEDLITKETVVVTLSHSGYVKYQPISDYNAQKR 539
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G GKS K + D + + +V +HD +L FS RGI+Y + Y++PE +R+ G P+V I
Sbjct: 540 GGKGKSAAKTKEKDYIENLLVANSHDTILCFSSRGILYWMKVYQLPEKSRHTRGRPIVNI 599
Query: 668 LSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL 727
L L+ ERIT+I+P++++ + M T +G++KK SLN F + AI L D+L
Sbjct: 600 LPLTSRERITTILPITKYKSSINIFMATAHGFVKKTSLNKFQKTKKFWYYAINLRKNDKL 659
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
V D + + S NG ++ S IR++ R G M++ + DK+ S+ ++P
Sbjct: 660 IGVSLTNGHDTIMLFSSNGKIVHFSEKTIRNMGRMASGIKGMKISEKDKVVSL-LVP--- 715
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR 847
+D+ +L V+E G+GK+ ++ F G+I K + ++
Sbjct: 716 ------NKKDN-----------ILIVTEHGYGKQTKINQFPIKSRATKGIISIKTTKKNG 758
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
+ V+G A ++D+Q+++++ +G + R ++ +I I R +GVIL+R + K+
Sbjct: 759 I----VIG---ALQVKNDDQIMMITNAGKLVRTRISEIGILKRNTQGVILIRASKNEKV 810
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 592 GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651
G+VK+ N F Q LR ND + + HD ++ FS G +
Sbjct: 630 GFVKKTSLNKF--QKTKKFWYYAINLRKNDKLIGVSLTNGHDTIMLFSSNGKIVHFSEKT 687
Query: 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--S 709
I R A+G ++ + +S+ +++ S++ ++ D L+ +T +GY K+ +N F
Sbjct: 688 IRNMGRMASG---IKGMKISEKDKVVSLLVPNK--KDNILI-VTEHGYGKQTKINQFPIK 741
Query: 710 SIRTTGIIAIQLVPGDELK-WVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA 768
S T GII+I+ + + NDD + M + G ++ + I L RNT+G +
Sbjct: 742 SRATKGIISIKTTKKNGIVIGALQVKNDDQIMMITNAGKLVRTRISEIGILKRNTQGVIL 801
Query: 769 MRLKDGDKMASMDII 783
+R +K+ + I
Sbjct: 802 IRASKNEKVVGLQKI 816
>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
gi|404394050|ref|ZP_10985854.1| DNA gyrase, A subunit [Ralstonia sp. 5_2_56FAA]
gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
gi|348614264|gb|EGY63816.1| DNA gyrase, A subunit [Ralstonia sp. 5_2_56FAA]
Length = 889
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/863 (42%), Positives = 524/863 (60%), Gaps = 62/863 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR L++MHEL +P+KK AR
Sbjct: 9 LPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQ+FSLRY L+ G GNFGS+D D AAAMRYTE RL
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLAD+D++TVNF PN+D S+ EPS+LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KIAHE-LLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+VD L+ NPEAT+ EL+E +P PDFPT G+I G G+ + YRTGRGR+ +R KT
Sbjct: 188 NEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAKTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E +D + +R +I+ E+PYQ NK L+E+IAELV K ++GISDIRDESD+SGMR+VIE
Sbjct: 248 FEDID-RGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+LY+ T LQ +F NMV ++DGQP+ + L+++L+ FL R VV RR
Sbjct: 307 LKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F L + +ER HI+EG+ V L N+D I I++ AP+ A A L +
Sbjct: 367 VFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVR 426
Query: 492 ----------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++LS+ QA IL M L+RLT LE+ K V E +
Sbjct: 427 AESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYR 486
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
+M QI L ++L+ + I +I +E+ ++ F R S +E ++ +LD D+I +
Sbjct: 487 EVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEH-NATELDTEDLITPQD 545
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S GY+K + + Q RG GK + +D + V HD++L FS+RG
Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + +++P+ +RN+ G P+V + LS GE+I I+PV +F F+ M T G +KK
Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKT 665
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
+L FS+ R GIIA+ L GD L V + S G + + +R + R
Sbjct: 666 ALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQA 725
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG M L++ ++ +M + PA T + +V GS +L +E+G+GKR P
Sbjct: 726 RGVRGMNLEENQQVIAMLVAPA-------ETAGEGAQSVAGS----VLTATENGYGKRTP 774
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+S + + G+I + S +R V ED +++L++ G + R +V
Sbjct: 775 ISEYTRHGRGTKGMIAIQTS--ERNGKVVAAALVAPED-----EIMLITTGGVLIRTRVD 827
Query: 884 DISIQARYARGVILMRLELSGKI 906
+I R +GV L+ + K+
Sbjct: 828 EIREMGRATQGVTLISVGEGNKL 850
>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 812
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/837 (41%), Positives = 540/837 (64%), Gaps = 35/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++ +E+ S++ YSMSV++ RALPDVRDGLKPVHRRIL+A+HE G++ KP KK
Sbjct: 9 KVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VGEV+GK+HPHGD A+Y ++V++AQ+F++RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 69 ANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTESR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ A LL DID+DTV++ PN+DES++EP +LPAR+P LLLNG++GIAVGMATNIPPH
Sbjct: 129 MSRIA-AELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+V + I NP+ T++EL++ +PGPDFPTGG++ GI AY TGRG I R +
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILEAR-GIRQAYETGRGTIRTRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E + K + +++ EIPYQ NK+ LVEKIAELV +K ++GI D+RDESDR G+RIV
Sbjct: 247 YEIE--EKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL++ + ++++N L+R T ++ SF M+ +++G+P+ + LKE++Q +++ R V+ R
Sbjct: 305 IELRKDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L+ K R+HI+EG+ + LDNLD +I ++R + A L+ F LSE QA+AI
Sbjct: 365 RTTYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSRFNLSEIQANAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L +LT LER K +E + ++ +I E++L+ + +L +I++++ +++ R+ R
Sbjct: 425 LDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPERVLSMIKEDLDDIEKRYGDNRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + +S ++ D I + E+++ +S +GYVKR +T+ Q RG G S +R D
Sbjct: 485 TEISQEES-SYEEEDFIDDHEVVITLSNRGYVKRQPLDTYRSQKRGGKGVSATTIRAEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
D +V A +L+F+++G V++ RA++IPE +R A G PLV L L GE++T+I+
Sbjct: 544 AHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKGMPLVNFLELRPGEKVTTIVGA 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + L+M+T G IKK +L F ++R +G+IA+ L DEL V V +A
Sbjct: 604 REFNREHHLLMVTKKGIIKKTALKAFQNVRKSGLIAVNLREDDELVGVIRVKTGSKVMIA 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G+ I+ +RS+ R G A+ L D + +D
Sbjct: 664 NSRGISIMFDEKQVRSMGRTAAGVKAINLSKDDYVVGLD--------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+ G +L V+E G+GKR LS F+ GL + + + +L A +V
Sbjct: 703 RYREGADVLLVTEKGYGKRTALSEFKLQNRGGKGLKAIEITRRNGKLVAFQIV------- 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ DE V+L S+ G + R++V DIS Q RY+RGV+LMRL +I + + + E
Sbjct: 756 SKEDELVILTSE-GNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFKIEKEE 811
>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
Length = 823
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/820 (41%), Positives = 525/820 (64%), Gaps = 34/820 (4%)
Query: 91 EEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL 150
EEM +Y+ Y+MSV++ RALPD RDGLKPV RIL+ M ++G+ + +PFKKCAR+VGE+L
Sbjct: 13 EEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVGEIL 72
Query: 151 GKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAM 210
GK HPHGD+AVYD+LVR+AQ +++RYPL+ G GNFGS+D DP AAMRYTE RL ++E M
Sbjct: 73 GKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARLTPIAEEM 132
Query: 211 LLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDV 270
L ADI+++TV+F NFD +EP +LPAR+P LLLNGA+GIAVGMATNIPPHNL E+ D
Sbjct: 133 L-ADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLSEVCDA 191
Query: 271 LCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDS 330
+ LI NP+AT+++L++ +PGPDFPT G+I+G GI++AY TGRG I +R K +E ++
Sbjct: 192 ITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAHIE--EA 249
Query: 331 KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD 390
+++ E+PYQ NK+ L E+IAEL ++ ++GI D+RDESDRSGMR+VI LK+ A
Sbjct: 250 ARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDAQ 309
Query: 391 PSIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
P V+N+LY+ T +Q++F NM+ +++G QP+ + LK +LQ ++D R V+ RR F L
Sbjct: 310 PKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRTEFDL 369
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
+ + R HI+EG+ + LD+LD VI +R + S A A L + F LSE QA+AIL+M L
Sbjct: 370 DKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMNGFALSEAQANAILEMQLG 429
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RL LER++ +E + ++ I +LE++L++ + IL LI+Q++ +LK ++ R + +
Sbjct: 430 RLAALERQRIEEEYREVIRLIGELEDILANPRKILHLIKQDLADLKAKYGDARRTRIIPE 489
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+G++ D D+IP+ ++L+ ++++GYVKR P+ + Q RG G R D + +
Sbjct: 490 ANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVYRTQRRGGRGIRGATTREQDVVRHILA 549
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
D +L+F+DRG VY +A+++P+ +R A G PLV +++L GE++TS++ V +F
Sbjct: 550 ANTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQVTSVLAVPDFEKA 609
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
++L+M T+ G IK+ S+ +S +R+ G+IAI L GDEL WV + V + + G
Sbjct: 610 EYLIMATVRGKIKRTSIREYSQVRSNGLIAIGLEEGDELGWVAMTQGHEDVLLTTARGQT 669
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I + +R + R G + + L +GD++ SMD+
Sbjct: 670 IRFRQEEVRPMGRPATGVIGIALAEGDRVVSMDL---------------------AQENA 708
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
LL V+ G+GKR L + G+I + D +A VV + +
Sbjct: 709 ALLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVAVAHVV--------RENSLL 760
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
++++SG V R + IS+ R +GV ++ L + ++ +
Sbjct: 761 TIITESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAA 800
>gi|222053122|ref|YP_002535484.1| DNA gyrase subunit A [Geobacter daltonii FRC-32]
gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter daltonii FRC-32]
Length = 856
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/874 (43%), Positives = 534/874 (61%), Gaps = 55/874 (6%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR L+AM+++G KP+KK AR
Sbjct: 8 VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD+LVRMAQDFSLRYPL+ G GNFGS+D D AAMRYTE R+
Sbjct: 68 VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMY 127
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLADID++TV PN+D+S KEP +LPA+ P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 128 QLAHE-LLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNL 186
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D + A+IHNPE T +EL+ +PGPDFPT G I G GIL AY TGRG I +R +
Sbjct: 187 AEVIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAI 246
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE K++R +++ EIPYQ NK+ LVEKIAELV K ++GISD+RDESDR GMR+V+E
Sbjct: 247 VE-THKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ +P IV+N LY+ T +QSSF M+ I++ +PK + L+E + F+D R +V RR
Sbjct: 306 LKKDENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRT 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA-----SAALKDE-------- 491
F L + + R HI+EG+ + LD LD VI ++R + + + A S DE
Sbjct: 366 IFDLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGL 425
Query: 492 ------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
LSE QA AIL+M L RLT +ER K +DE ++ I +L+E+L+S
Sbjct: 426 SLPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASE 485
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
IL++I E++ELK +F R + + D + ++ D I ++M++ IS GY+KR
Sbjct: 486 TEILKIIVGELLELKEKFGDKRRTEIID-QTAEISLEDTIVEEDMVVTISHTGYIKRNAV 544
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
+ Q RG GK+ K + D + + + D++++F+D G VY + Y+IPE R
Sbjct: 545 TMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRAT 604
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G +V +L+LS E+IT+I+PV EFA D+F++M T +G +KK L +S R GIIA+
Sbjct: 605 RGKAIVNLLNLSANEKITAILPVKEFAADKFIMMATRHGVVKKTPLMEYSHPRLGGIIAV 664
Query: 720 QLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMAS 779
L GD+L V V +AS+NG I +R++ R +RG M L+D D +
Sbjct: 665 NLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTVGRVSRGVRGMTLEDDDVVIG 724
Query: 780 MDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
M+II E + S L V+E+G GKR L +R G+I
Sbjct: 725 MEII----------NEEYTDST--------LFTVTENGFGKRTELGEYRCQSRGGKGIIT 766
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
K + +R V + + E+ ++L++ G + R+ V SI R +GV LM
Sbjct: 767 IKTT--ERNGCVVDIKQVVDEN-----DLMLITDQGKILRVPVEGFSIIGRNTQGVRLMV 819
Query: 900 LELSGKIQSASLISVTEPETDLFLPSTSDKLATE 933
E ++ + + ++ E E D ST L TE
Sbjct: 820 TEDDERVVAVARLA--EKEEDDADESTDGGLDTE 851
>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
Length = 874
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/876 (42%), Positives = 548/876 (62%), Gaps = 67/876 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+++DTV++VPN+D ++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N E T+ +L+EY+PGPDFPT +I G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ D K +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEVEDKNGKET-IIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F++ R
Sbjct: 301 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNV 420
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+EF L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 421 AAMLERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKA 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I +L +LSS + ++++I +E+ +K +F+ R + + A + +D D+I +++
Sbjct: 481 LLEEIAELLHILSSAERLMEVIREELELVKEQFNDARRTEITAA-THDIDLEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GK+ +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRM 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V IL L + ERIT+I+PV E+ D+F+ M T +G +KK
Sbjct: 600 YWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTVKKTP 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L D L V ++ + + S+ G V+ + +R++ R
Sbjct: 660 LTDFSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAA 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L + D + S+ I+P H D + +L V+E+G+GKR L
Sbjct: 720 GVRGIKLAESDNVVSL-IVP---HNDGD-----------------VLTVTENGYGKRTEL 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G++ K S + VVG +G ++ ++++ GT+ R +VR+
Sbjct: 759 EEYPAKSRATQGVVSIKVSERNG----SVVGAVQVLEG---DEFMMITNGGTLVRTRVRE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+S R +GV L+R K+ L + EP+ D
Sbjct: 812 VSRVGRNTQGVTLIRTTEEEKV--VGLQRIDEPDED 845
>gi|342218095|ref|ZP_08710723.1| DNA gyrase, A subunit [Megasphaera sp. UPII 135-E]
gi|341591389|gb|EGS34594.1| DNA gyrase, A subunit [Megasphaera sp. UPII 135-E]
Length = 812
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/837 (43%), Positives = 541/837 (64%), Gaps = 36/837 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ +++PV L +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+K
Sbjct: 6 TEKVLPVCLEDEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD +VYD+ VR+AQ+FS RYPL+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVLGKYHPHGDRSVYDATVRLAQNFSTRYPLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ ML DID++TV+F+PN+D S +EP++LP+++P LL+NG++GIAVGMATNIP
Sbjct: 126 VRMAKITGEML-EDIDKETVDFMPNYDGSLQEPAVLPSKIPNLLVNGSAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE+VD LI NPEATL+++++ + GPDFPTG I+G GIL AY TGRG I +R
Sbjct: 185 PHNLGEVVDGCVTLIDNPEATLEDIMKCIQGPDFPTGAKILGREGILKAYTTGRGSIKMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ R +++ EIPYQ NK+ ++E IA+L NK +DGI+ +RDESDR GMR
Sbjct: 245 SCATIESMNKGKNR--IVVTEIPYQVNKARVIESIADLTRNKLIDGITALRDESDRKGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+ +P IV+N LY+ T LQ +F M+ ++DG P+ + LK+VL +LD + V+
Sbjct: 303 IVIELRADVNPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLTLKQVLNYYLDHQKQVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR++F+L++ R HI+EG+++ LD++D VIR++RE+ ++ A ++L F LSEKQA
Sbjct: 363 TRRSQFELNKALARAHILEGLLIALDHIDEVIRMIRESANDDVAKSSLMQSFGLSEKQAI 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM LRRLT LER+K +E K L E+I L +L+ ++++++QE++E K RFS
Sbjct: 423 AILDMRLRRLTGLEREKIEEEYKELEERIAYLRAVLADEHKVMEIVKQELLEAKKRFSDI 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + L ADS +L D+IP++ M+L ++ +GYVKRM N ++ QN+G G +
Sbjct: 483 RRTQLV-ADSSELGVEDMIPDERMVLTLTRRGYVKRMNANVYHTQNKGGRGVRGMGTKEE 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSI 679
D ++ + + VL+F++ G VY +AY+IPE RN+ G + IL L +GE++ ++
Sbjct: 542 DTVNHLLYTSSLHTVLFFTNLGRVYRLKAYEIPEANNRNSKGIAAINILPLDEGEKVNAL 601
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I + + L M T G +KK L F ++R G+IAI LV GD L VR D +
Sbjct: 602 IDLDQADLSMHLFMATEQGLVKKTPLIEFKNVRRNGLIAISLVEGDHLAKVRLTKGDQRI 661
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A++ GM I + + +R RNTRG + L D + D++
Sbjct: 662 ILATKQGMAICFNENDVRPTGRNTRGVRGISLAPDDLVIGADVLALECQ----------- 710
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSL 858
+L VSE G GKR + ++ + R G G K F + A +VG +
Sbjct: 711 ----------VLTVSEEGFGKRNNMDAYN---IQRRGGKGVKNFKITQKTGA--IVGVEV 755
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISV 914
+ +++++L++ +G V R + I + + R GV + +LE + K+ + I+V
Sbjct: 756 VRE---EQELMLITTNGIVIRTDIESIGVKKGRNTSGVKIQKLEENDKVAALDTITV 809
>gi|366163652|ref|ZP_09463407.1| DNA gyrase subunit A [Acetivibrio cellulolyticus CD2]
Length = 845
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/826 (42%), Positives = 523/826 (63%), Gaps = 39/826 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV++ EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M LG + K +KCA
Sbjct: 12 IIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPDKAHRKCA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VGEVLGK+HPHGD AVYDS+VRMAQDFSLRY L+ GHGNFGS+D DP AAMRYTE RL
Sbjct: 72 TTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAMRYTEARL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S M + DI++DTV+F PNFDE + EP +LP+R P LL+NG+SGIAVGMATNIPP N
Sbjct: 132 AKISMEM-IRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMATNIPPQN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D + +I P+ T+ EL + + GPDFPT G+I+G GI DAYRTGRGRI +R T
Sbjct: 191 LSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRIIMRAVT 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +R +++ E+PYQ NK+ LVEKIA+LV+ K ++ ISD+RDESDR+GMRIVI
Sbjct: 251 NIEQMSPNKQR--IVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGMRIVI 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-----QPKQMGLKEVLQAFLDFRCS 438
ELKR A+ +IV+N L++ T +Q +FS NM+ ++ +P + L++ + ++D +
Sbjct: 309 ELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVDHQKD 368
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR RF+L + + R HI+EG+ + +DNLD VIRI+R + + + A L + F SEKQ
Sbjct: 369 VIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMERFSFSEKQ 428
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AI+DM L RLT LER+K E + L+ +I +++L++ +L +I++E+ E+K +F
Sbjct: 429 AQAIVDMRLGRLTALEREKLEAEYQELLAKIKYYKDVLANEFMVLDIIKEELGEIKGKFG 488
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + D D D+I + ++ ++ GYVKR+ +T+ Q RG G R
Sbjct: 489 DERRTKI-IPDETDFDVEDLIEEQDSVITLTHFGYVKRLPTDTYKSQRRGGKGIIGLSTR 547
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD++++F+++G VY + Y+IPE R A GT +V +L L E++T+
Sbjct: 548 EEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAKGTAIVNLLQLDQEEKVTT 607
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+IP+ E+ +L++ T NG +KK L + IR G+ A+ L DEL VR
Sbjct: 608 VIPIKEYKEGMYLILATKNGVVKKTDLMEYDHIRKGGLTAVALRENDELIDVRLTDGTKD 667
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NGM I + + +R L R ++G ++L D D + M + +E T
Sbjct: 668 ILLVTKNGMSIRFNEEDVRPLGRVSQGVRGIKLDDDDVVIGMGVF-------IEDTS--- 717
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
LL V+E G GKR L ++ G++ Y+ + + ++A + +V
Sbjct: 718 -----------LLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTEKTGKIAGMKLV--- 763
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
E D+ V+L+S GT+ RI V DIS+ R +GV LMR++ S
Sbjct: 764 ----NEKDD-VMLISSDGTIIRINVNDISVLGRATQGVTLMRMDES 804
>gi|406928345|gb|EKD64164.1| hypothetical protein ACD_51C00059G0002 [uncultured bacterium]
Length = 888
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/829 (42%), Positives = 529/829 (63%), Gaps = 31/829 (3%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P E+ +EM Y+ Y+MSV++ RALPDVRDGLKPVHRRIL+AMHELGL S ++K A V
Sbjct: 61 PREISDEMETCYLDYAMSVIVARALPDVRDGLKPVHRRILYAMHELGLRSNSSYRKSATV 120
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD+AVYDS+VR+AQDF++RY L++G GNFGSID D AAAMRYTE ++E
Sbjct: 121 VGEVLGKYHPHGDSAVYDSMVRLAQDFAMRYTLVKGQGNFGSIDGDSAAAMRYTEAKMEK 180
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++E M LADI+++T+ + N+D KEP++LP RLP LLLNG GIAVGMATNIPPHNLG
Sbjct: 181 MAEDM-LADIEKETIKWTDNYDGRLKEPTVLPTRLPQLLLNGTVGIAVGMATNIPPHNLG 239
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E++D +I NP+ T++++++++ GPDFPT G+I I D Y GRG I +R K ++
Sbjct: 240 EVIDGTMLVIDNPDCTIEDIMQHIKGPDFPTAGIIYDVNAIKDMYTNGRGGIVMRAKADI 299
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E + K + +I+ EIPYQ NKS LV KIA+LV +K + GI+DIRDES+R G+RIVIEL
Sbjct: 300 E--EKKGGKFQIIVTEIPYQINKSTLVTKIADLVRDKKIKGITDIRDESNREGIRIVIEL 357
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRA 444
K+ + P ++N LY++T +Q+SF+ NM+ ++DG QP+ + +K+V+ F++ R V+ R
Sbjct: 358 KKDSYPKKILNQLYKMTPMQTSFNMNMIALVDGIQPRLLNIKQVIGYFVEHRKEVITNRT 417
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
+F+L K R HI+EG+ + LD++D +I ++++P+ A A+L +FKLS+ QA AIL+
Sbjct: 418 KFELKIAKARAHILEGLKIALDHIDAIIETIKKSPTKEDAHASLMKKFKLSDLQAQAILE 477
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+ L LE+KK DE + I KLE +L K +L++++ E+ E+K +++ R +
Sbjct: 478 MRLQTLAGLEQKKIEDEYNEKLALIDKLEGILKDTKKVLKIMKDELAEIKEKYADARKTE 537
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ + G++ D IPN M++ ++E+ Y+KR+ P++F Q RG G + D +
Sbjct: 538 IVEHAVGEISQKDTIPNAPMIITLTEENYIKRVTPSSFRTQKRGGKGVIGMSTKEEDEID 597
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
HD++++F+++G V+ Y+IP+ +R A G P+V +L L + ERITSI+ E
Sbjct: 598 IIKGAMNHDNIMFFTNKGRVFRLPVYEIPQASRQAKGIPIVNLLQLGEDERITSILTSDE 657
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
++L M T G +KK + F +IR +G+IAI+L GD L+WVR D + + +
Sbjct: 658 EKTGKYLFMATKKGTVKKTDMEDFKNIRKSGLIAIKLREGDTLEWVRQTIEKDKIVIVTH 717
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +RS+ R + G +R+K+GD MDI+ ED
Sbjct: 718 EGKCIQFDEADVRSMGRASTGVRGIRVKEGDYCVQMDIV--------RNNNED------- 762
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS-LAEDGE 863
LL V E+G GK PL S+R G+ +A+ V+G S + E E
Sbjct: 763 -----LLVVMENGLGKCTPLVSYRFQSRGGSGVKTANITAK----TGKVIGASVIREATE 813
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
SD +++VS+ G + R+ + I + R +GV +MRL K+ S S++
Sbjct: 814 SD--LIVVSKQGQIIRVPLASIPSRGRATQGVYVMRLNEGDKVASISVM 860
>gi|386755720|ref|YP_006228937.1| DNA gyrase subunit A [Helicobacter pylori PeCan18]
gi|384561978|gb|AFI02444.1| DNA gyrase subunit A [Helicobacter pylori PeCan18]
Length = 828
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 542/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|417886143|ref|ZP_12530291.1| DNA gyrase, A subunit [Lactobacillus oris F0423]
gi|341594010|gb|EGS36821.1| DNA gyrase, A subunit [Lactobacillus oris F0423]
Length = 844
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 544/859 (63%), Gaps = 40/859 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++S RI V+L +M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP
Sbjct: 4 DMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GKFHPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRY
Sbjct: 64 YKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ ML DI++DTV+F PN+D ++KEP++LPAR P LL+NGASGIAVGMATN
Sbjct: 124 TEARMSKIALEML-RDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IP HNLGE++ + L++NP+ T+ EL++ +PGPDFPTGG++MG GI AY TGRG I
Sbjct: 183 IPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSII 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K ++E + K+ + +I+ EIPY NK+ L+ +IA+L +K +DGI+D+ DE+DR G
Sbjct: 243 VRAKIDIE--EQKNGKQRIIVHEIPYMVNKANLISRIADLARSKEIDGITDVNDETDRDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVI+++R A +++N+LY++T +Q++F+ NM+ I++G PK + LK++LQ +L+ +
Sbjct: 301 MRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQED 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
VV RR F L + + R HIVEG+ + LD++D +I I+R++ ++ A L + LS++Q
Sbjct: 361 VVRRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L RLT LER+K E K L E I +++L+ R+ I Q+I E++E++ +F
Sbjct: 421 AQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRERINQIIYDELMEIQKKFG 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + L+ D ++D D+I ++++ ++ GY+KR+ + F Q+RG G +
Sbjct: 481 DKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMGVH 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + I HD +L+F++ G VYS + Y++PE R A G P++ +L++ E+I++
Sbjct: 541 NDDFIEQLISSSTHDLLLFFTNSGEVYSMKGYEVPEYGRAAQGIPIINLLNIDSKEKISA 600
Query: 679 IIPVSEFAG--DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
+I VS D+FL T +G +K+ + F +IR+ G+ AI L DEL V +
Sbjct: 601 VINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAINLHDDDELIDVDVIEDQ 660
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + ++NG + + ++RS+ R G +RL+D D + I A LH+D
Sbjct: 661 QTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDNDSV----IGAAPLHQD------ 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
NV L +SE+G GK+ P + P+ G +G K + V
Sbjct: 711 ---DNV--------LVISENGFGKQTPAKDY---PIKGRGGLGVKTVNVTKKNGPLVGMT 756
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++A DE ++LV+ G + R + +S R A GV L++++ K+ + + + E
Sbjct: 757 TVA----GDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKV---E 809
Query: 917 PETDLFLPSTSDKLATESG 935
E D S D TE G
Sbjct: 810 KEDD----SDDDAQGTEDG 824
>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
gi|417906730|ref|ZP_12550510.1| DNA gyrase, A subunit [Staphylococcus capitis VCU116]
gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
gi|341597541|gb|EGS40095.1| DNA gyrase, A subunit [Staphylococcus capitis VCU116]
Length = 890
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/861 (41%), Positives = 551/861 (63%), Gaps = 37/861 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+RI
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRI 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ +L+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD + +D+ A
Sbjct: 665 IGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHA--------------- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+ +R L+ G G K + +R + +
Sbjct: 710 ----ESEDEVLVVTENGYGKRTPVDEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LMRL G+ Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRL---GEGQFVSTVAKVKEEE 814
Query: 920 DLFLPSTSDKLATESGVSEML 940
D + D A+E+ E++
Sbjct: 815 D-NQADSDDTDASETATEEVI 834
>gi|358638548|dbj|BAL25845.1| DNA gyrase subunit A [Azoarcus sp. KH32C]
Length = 870
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/868 (42%), Positives = 535/868 (61%), Gaps = 64/868 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AMHEL K +KK AR
Sbjct: 9 LPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNKAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ LLADI+++TV+F PN+D S+KEP +LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 RIGHE-LLADIEKETVDFGPNYDGSEKEPLVLPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE++D ++ +PE +++EL+ + PDFPT GLI G G+ D YRTGRGR+ +R +T
Sbjct: 188 GEVLDACLKVLEDPEVSIEELIRIVQAPDFPTAGLIYGLSGVHDGYRTGRGRVVMRARTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E L+ K R +I+ E+PYQ NK L+E+IAELV K ++GIS+IRDESD+SGMR+VIE
Sbjct: 248 FEDLE-KGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR P +V+N+L++ T LQ +F NMV ++DG+P+ + LK++L+ FL R V+ RR
Sbjct: 307 LKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLECFLSHRREVITRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS------------------- 485
F+L + +ER HI+EG+ V L N+D +I +++ AP+ S A
Sbjct: 367 IFELRKARERGHILEGLAVALSNVDEIIALIKAAPTPSDAKRELMARVWRSTLVEEMLAR 426
Query: 486 --------AALKDEF-------KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
L +EF +LS+ QA AIL++ L+RLT LE+ K V E + +M+ I
Sbjct: 427 AMAGSYRPEGLAEEFGLSANGYRLSDVQAQAILELRLQRLTGLEQDKIVAEYREVMDVIT 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I +I +E+ ++ +F PR S + ++G+++ D+I ++M++ +S
Sbjct: 487 DLLDILARPERITAIIVEELGAIRMQFGDPRRSEIV-LNTGEINIEDLIAPEDMVVTLSH 545
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY KR + Q RG GK ++ +D + V HD++L FS RG VY + Y
Sbjct: 546 GGYFKRQPLADYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYWLKVY 605
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
++PE TRN+ G P+V + L +GE+I +++PV F D F+ M T G +KK SL F++
Sbjct: 606 EVPEGTRNSRGRPIVNLFPLVEGEKINAVLPVQAFDDDHFVFMATAEGTVKKTSLTAFAN 665
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIA L GD L V D V + S G + +R + R RG M
Sbjct: 666 PRKAGIIAASLDDGDRLIGVAITNGDSDVMLFSDAGKAVRFHEGDVRPMGREARGVRGMT 725
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+DG ++ +M V S +L +E+G+GKR P++ + +
Sbjct: 726 LEDGQRVIAM--------------------LVSKSEDLSVLTATENGYGKRTPVAEYTRH 765
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I + S + +VG L E ESDE V+L+S G + R KV+DI R
Sbjct: 766 GRGTKGMIAIQTSERNGK----LVGACLVE--ESDE-VMLISTGGVLIRTKVQDIRELGR 818
Query: 891 YARGVILMRLELSGKIQSASLISVTEPE 918
+GV L+ L+ + + S ++ +EPE
Sbjct: 819 ATQGVTLINLDETDSLASIEKVAESEPE 846
>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
Length = 891
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/861 (41%), Positives = 550/861 (63%), Gaps = 37/861 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 9 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 129 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 188 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+RI
Sbjct: 248 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRI 305
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 306 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 365
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 366 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQA 425
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 426 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERFGDER 485
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 486 RTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEED 545
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 546 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIA 605
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ +L+ FS I G IAI DEL VR T ++ +
Sbjct: 606 VKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDIL 665
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD + +D+ A
Sbjct: 666 IGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHA--------------- 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+ +R L+ G G K + +R + +
Sbjct: 711 ----ESEDEVLVVTENGYGKRTPVDEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 763
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LMRL G+ Q S ++ + E
Sbjct: 764 E-----EDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRL---GEGQFVSTVAKVKEEE 815
Query: 920 DLFLPSTSDKLATESGVSEML 940
D D A+E+ E++
Sbjct: 816 D-NQADADDTDASETATEEVI 835
>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
Length = 889
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/855 (42%), Positives = 521/855 (60%), Gaps = 62/855 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR L++MHEL +P+KK AR
Sbjct: 9 LPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQ+FSLRY L+ G GNFGS+D D AAAMRYTE RL
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLAD+D++TVNF PN+D S+ EPS+LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KIAHE-LLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+VD L+ NPEAT+ EL+E +P PDFPT G+I G G+ + YRTGRGR+ +R KT
Sbjct: 188 NEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAKTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E +D + +R +I+ E+PYQ NK L+E+IAELV K ++GISDIRDESD+SGMR+VIE
Sbjct: 248 FEDID-RGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+LY+ T LQ +F NMV ++DGQP+ + L+++L+ FL R VV RR
Sbjct: 307 LKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F L + +ER HI+EG+ V L N+D I I++ AP+ A A L +
Sbjct: 367 VFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVR 426
Query: 492 ----------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++LS+ QA IL M L+RLT LE+ K V E +
Sbjct: 427 AESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYR 486
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
+M QI L ++L+ + I +I +E+ ++ F R S +E ++ +LD D+I +
Sbjct: 487 EVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEH-NATELDTEDLITPQD 545
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S GY+K + + Q RG GK + +D + V HD++L FS+RG
Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + +++P+ +RN+ G P+V + LS GE+I I+PV +F F+ M T G +KK
Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKT 665
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
+L FS+ R GIIA+ L GD L V + S G + + +R + R
Sbjct: 666 ALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQA 725
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG M L++ ++ +M + PA T + +V GS +L +E+G+GKR P
Sbjct: 726 RGVRGMNLEETQQVIAMLVAPA-------ETEGEGAQSVAGS----VLTATENGYGKRTP 774
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+S + + G+I + S +R V ED +++L++ G + R +V
Sbjct: 775 ISEYTRHGRGTKGMIAIQTS--ERNGKVVAAALVAPED-----EIMLITTGGVLIRTRVD 827
Query: 884 DISIQARYARGVILM 898
+I R +GV L+
Sbjct: 828 EIREMGRATQGVTLI 842
>gi|335049929|ref|ZP_08542910.1| DNA gyrase, A subunit [Megasphaera sp. UPII 199-6]
gi|333761836|gb|EGL39362.1| DNA gyrase, A subunit [Megasphaera sp. UPII 199-6]
Length = 817
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/840 (42%), Positives = 537/840 (63%), Gaps = 34/840 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +++PV L EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+K
Sbjct: 6 SDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD++VY + VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVLGKYHPHGDSSVYYATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ ML ADID++TV+F+PN+D S +EP++LP+++P LL+NG++GIAVGMATNIP
Sbjct: 126 VRMAKITGEML-ADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE+VD LI P+A+L+E++ + GPDFPTG IMG GIL AY TGRG + +R
Sbjct: 185 PHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSVKMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
VE + R +++ EIPYQ NK+ ++E IAEL N+ +DGI+ +RDESDR G+R
Sbjct: 245 SCVAVEPMTKGKNR--IVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+ +P I++N LY+ T LQ +F M+ ++DG P+ + L +VLQ +L + V+
Sbjct: 303 IVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR RF+L + R HI+EG+++ LD++D VIR +RE+ ++ TA +L F L++KQA
Sbjct: 363 TRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAV 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM LRRLT LER+K +E + L E+I L +L+ + ++++++ E++E K RF
Sbjct: 423 AILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDV 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + L AD+ +L D+IP++ M+L ++ +GY+KR+ N ++ QN+G G +
Sbjct: 483 RRTQLA-ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKGMGTKDE 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSI 679
DA++ + A VL+F++ G VY +AY+IPE +RN+ G + IL LS GE++ ++
Sbjct: 542 DAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTGEKVNAL 601
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I + + L M T NG +KK L F ++R G+IAI L+ GD L VR +
Sbjct: 602 IDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAKVRLTNGKQRI 661
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A++ GM I + +R + RNTRG + L GD++ D++
Sbjct: 662 ILATKLGMAICFNESDVRPMGRNTRGVRGISLAPGDRVIGADVL---------------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+ +L VSE G GKR + +++ G +K + + + +VG +
Sbjct: 706 -----APDCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGV----IVGVEVV 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPE 918
+ D++++L++ +G V R + I I + R GV + +LE K+ + I+V E
Sbjct: 757 RE---DQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEE 813
>gi|418612355|ref|ZP_13175399.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU117]
gi|418626570|ref|ZP_13189168.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU126]
gi|374819657|gb|EHR83777.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU117]
gi|374831640|gb|EHR95377.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU126]
Length = 893
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 542/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++ +PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|343515357|ref|ZP_08752415.1| DNA gyrase, A subunit [Vibrio sp. N418]
gi|342798516|gb|EGU34123.1| DNA gyrase, A subunit [Vibrio sp. N418]
Length = 886
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/855 (42%), Positives = 544/855 (63%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LL D++++TV+FVPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIA-GELLTDLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I+N E T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET--EKNGRETIIVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDHGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + + L N+D +I ++R A + + A A L
Sbjct: 360 VVTRRTIFELKKARERAHILEALALALANIDEIIELIRNAATPAEAKAGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 AAMLESAGNDAARPDWLEPEFGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I +L +L+S + ++++I +E+ ++ + R + + A S +D ++I +++
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELELVREAYGDARRTEITAA-SHDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V IL L +GERIT+I+PVSEF+ D+F+ M T +G +KK
Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSADKFIFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
LN F+++R+ G+IA+ L D L V + + S+ G V+ S D +R++ R
Sbjct: 659 LNQFANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G MRL D D++ S+ I+P S+ +L V+++G+GKR L
Sbjct: 719 GVRGMRLADEDQVVSL-IVP--------------------SNEGDILTVTQNGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G++ K S + VVG E+G +++++++ +GT+ R +V +
Sbjct: 758 SEYPTKGRATQGVVSIKVSERNGP----VVGAVQVEEG---DEMMMITDAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMR 899
+S R +GV L+R
Sbjct: 811 VSQVGRNTQGVTLIR 825
>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera versatilis 301]
gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera versatilis 301]
Length = 882
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/878 (41%), Positives = 535/878 (60%), Gaps = 67/878 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHEL KP+KK AR
Sbjct: 9 LPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLADID++TV+F PN+D S+ EP ++PAR+P LL+NG+SGIAVGMATNIPPHN+
Sbjct: 129 KIAHE-LLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNI 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D AL+ +PE ++EL+E +P PDFPT G+I G +G+ + YRTGRGR+ +RG+T
Sbjct: 188 NEVLDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVVMRGRTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE L+ + R +I+ E+PYQ NK VEKIAELV K ++GISD+RDESD+SGMR+VIE
Sbjct: 248 VEDLE-RGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG +V+N+LY+ T LQ +F NMV +LDGQP+ + LK++L+AFL R V+ RR
Sbjct: 307 LKRGEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVITRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------------- 488
F+L + + R HI+EG+ V L N+D +I I++ AP+ A AL
Sbjct: 367 VFELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKR 426
Query: 489 ------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+ +KLS+ QA IL M L+RLT LE+ K V E K +M+ I
Sbjct: 427 AAMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIA 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-MLEDADSGQLDDIDIIPNDEMLLAIS 589
L ++L++ + +I E+ E++ +F R S ++ +A L+D I P D +++ +S
Sbjct: 487 DLLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDF-ITPQD-VVVTLS 544
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
GYVK + + Q RG GK + + +D + V HD++L FS RG VY +
Sbjct: 545 HTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYWLKV 604
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P+ +R G P+V + L +GE+I +I+ V EF + F+ M T G +KK L+ F+
Sbjct: 605 YEVPQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFA 664
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAM 769
+ R +GIIAI L GD L + V + S G + + D +RS+ R TRG M
Sbjct: 665 NPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGM 724
Query: 770 RLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRK 829
+L D ++ S+ I D S +L +E+G+GKR L+ FR
Sbjct: 725 KLADNQQVLSLLI-----------ADNDQQS---------VLVATENGYGKRTVLADFRH 764
Query: 830 LPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQA 889
G+ S + L VV L + D++++L++ G + R +V++I
Sbjct: 765 SGRGTQGVKAIAISERNGL----VVAAKLVNE---DDEIMLITTGGVLIRTRVKEIRELG 817
Query: 890 RYARGVILMRLELSGKIQS-ASLISVTEPETDLFLPST 926
R +GV L+ L K+ ++ +PE+++ +T
Sbjct: 818 RATQGVTLINLGEGEKLSGLEKIVESDDPESEVDADAT 855
>gi|358465990|ref|ZP_09175863.1| hypothetical protein HMPREF9093_00324 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069505|gb|EHI79410.1| hypothetical protein HMPREF9093_00324 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 812
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/843 (42%), Positives = 547/843 (64%), Gaps = 39/843 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
NV R + EL E SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G+++ KP
Sbjct: 3 NVDNRYIEEELKE----SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKP 58
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
FKK AR+VGEVLGK+HPHGD+AVY ++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 59 FKKSARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNFRYLLVEGHGNFGSIDGDSAAAMRY 118
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+E ++ A LL DID+DT+++ NFD+S EP++LPA+LP LLLNGA GIAVGMATN
Sbjct: 119 TEARMEKIT-AELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATN 177
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGELVD + ALI N + + EL+ Y+ GPDFPTG +I G GI+DAYRTGRG+I
Sbjct: 178 IPPHNLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIDAYRTGRGKIK 237
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VRGK ++E + K+ + +I+ EIPYQ NK+ L+EKIA LV+ K + ISD+RDES+R G
Sbjct: 238 VRGKVDIE--EQKNGKANIIVSEIPYQLNKATLIEKIANLVKEKKITEISDLRDESNREG 295
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+RIVIE+K+G +P +V+N LY+ T LQ++F M+ +++ P+ + LKE+L ++ R +
Sbjct: 296 IRIVIEVKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFN 355
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI++G + L+N+DR+I ++R + + A L +++ ++ Q
Sbjct: 356 VITRRTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQ 415
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A +ILDM L+RLT LER+K +E K + I +L E+L+ I +++++E++ELK++++
Sbjct: 416 ARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLELKDKYN 475
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E+ L + D+I ++E+++ + KGYVKR++ + + Q RG G S
Sbjct: 476 DKRRTKIEEERMEILPE-DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTI 534
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D D ++ F+DRG VY+ RAY+IP+ ++ + G L I++LS+GE++
Sbjct: 535 EDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVRD 594
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC--TND 736
I + EF+ ++ +V +T G IKK SL F +I ++G+IAI++ D+L +V N
Sbjct: 595 TIVIKEFSTEKEVVFITKKGLIKKTSLGEFKNINSSGLIAIKIKEDDDLIFVGLIEDVNK 654
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +A+ +G D IR R+T+G A+ L++GD + S +I + PE
Sbjct: 655 EEILIATYDGYSTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLI---------KNPE 705
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
+L ++E+G+GKR L + + G+I K + + ++ +V V
Sbjct: 706 TD-----------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVNEKTGKIVSVLEVN 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
DE+++ ++ +G V R + +IS R +GV +M++ K+ + + I
Sbjct: 755 --------EDEELMCLTSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAITKIKKD 806
Query: 916 EPE 918
E E
Sbjct: 807 EEE 809
>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
Length = 891
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/821 (42%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+RI
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRI 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQSSF NM+ +++G+PK + LKE L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDETISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + D +LV T G +K+ +L+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VRNLESEDDYLVFATKRGIVKRSALSNFSRINKNGKIAISFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ A
Sbjct: 665 IGTSHASLIRFPESALRPLGRTAAGVKGITLREGDEVVGLDVAHA--------------- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 710 ----ESEDEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV LM+L
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKL 798
>gi|218709923|ref|YP_002417544.1| DNA gyrase subunit A [Vibrio splendidus LGP32]
gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
Length = 890
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/858 (41%), Positives = 550/858 (64%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LL D+D+DTV+FVPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMSKIA-GELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+VD A I+N + T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSRAEIET--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ +K++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I +++ AP+ + A L
Sbjct: 360 VVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ +++ + R + + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEI----TAAVHDIDMEELIAQ 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P+ +R A G P+V IL L +GERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+++R G+IA+ L D L V + + + S++G V+ + D +R + R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L + D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TASGVRGMKLPEDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L+ + G++ K S DR VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELAEYPTKGRATQGVVSIKVS--DRNGP--VVGAVQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 17/206 (8%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ + + G VK+ + F N++ G I + LR +D++ + + ++ FS
Sbjct: 641 NEKFIFMATGDGTVKKTSLDQFANVRANGLIAVN---LRDDDSLIGVDITDGNSDIMLFS 697
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLVMLTMNG 698
G V K+ R A+G V+ + L + +++ S I+P +E GD ++ +T NG
Sbjct: 698 KSGKVVRFNEDKVRPMGRTASG---VRGMKLPEDDQVVSLIVPSNE--GD--ILTVTQNG 750
Query: 699 YIKKVSLNLFSSI--RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCD 754
Y K+ L + + T G+++I++ G + V+ D+++ M + G ++ +
Sbjct: 751 YGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMM-MITDAGTLVRTRVA 809
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + RNT+G +R + + + +
Sbjct: 810 EVSQVGRNTQGVTLIRTAEDENVVGL 835
>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
Length = 830
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/838 (42%), Positives = 526/838 (62%), Gaps = 32/838 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+ S RIVP+ + +EM SYI Y+MSV++GRALPD RDGLKPVHRRIL+AM E G++ K
Sbjct: 25 DTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGMTYDKA 84
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+VLGK+HPHGD AVYDSLVRM Q+FSLRYPLI G GNFGSID D AAAMRY
Sbjct: 85 YKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMRY 144
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R++ +S M LADID++TV + PN+D S KEP++LPARLP LL+NG++GIAVGMATN
Sbjct: 145 TESRMDRISNEM-LADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGIAVGMATN 203
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
+ PHNLGE++D LI +PE + L+E + GPDFPTGG+I+G+ GI AY TGRG I
Sbjct: 204 MAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAYETGRGPIK 263
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R T +E + + KR +++ E+PYQ NKS L+E IA LV K + GISD+RDESDR G
Sbjct: 264 IRAVTSIEEMKNDKKR--IVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDESDRDG 321
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+ IEL R +P +++N LY+ T +Q++F + ++D P+++ LKE+LQ +L+ R
Sbjct: 322 IRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIYLEHRID 381
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ +R+ F + + E+ HI++G+M+ LD++D VI ++R + + A L F L E Q
Sbjct: 382 VILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTRFGLDEVQ 441
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L++LT LER+K DE L++ I L++++ S + +I++E+ ++ RF+
Sbjct: 442 AKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDERKYSIIKEELHAIRERFA 501
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + + + + +D D+IP +E+++ I+ GY+KRM +T++ Q+RG G + +
Sbjct: 502 DKRRTEITGSHV-EFEDEDLIPVEEVIVTITNSGYIKRMPVDTYSQQHRGGKGVIGMETK 560
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + D + HD++++F++RG V+ + Y +PE +R + G +V +L L++ E +T+
Sbjct: 561 EQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEGSRQSKGKAVVNLLDLAENESVTA 620
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
I V EF D+FL M T G +KK L+ FS++R GIIA++L GDEL V
Sbjct: 621 TITVKEFEEDKFLFMATRMGTVKKTPLSDFSNVRKAGIIALKLDEGDELVNVALTDGSKE 680
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ M S++G I +R + R RG MRL D + S+DI+ +
Sbjct: 681 IMMVSRHGKAIRFCERDVRPMGRTARGVRGMRLTGDDIVVSLDIVDLSTK---------- 730
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL ++E+G+GKR +R + G+I S R V V
Sbjct: 731 -----------LLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSL--RNGPVINVKAVK 777
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
ED +V++ S G RI V+DI Q R +GV +M + K+ + I E
Sbjct: 778 EED-----EVMVTSSEGIFIRIPVKDIRAQGRNTQGVKIMNVRPGDKVVGVARIKNEE 830
>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
Length = 890
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/858 (41%), Positives = 550/858 (64%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LL D+D+DTV+FVPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMSKIA-GELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+VD A I+N + T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSRAEIET--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ +K++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I +++ AP+ + A L
Sbjct: 360 VVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ +++ + R + + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEI----TAAVHDIDMEELIAQ 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P+ +R A G P+V IL L +GERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+++R G+IA+ L D L V + + + S++G V+ + D +R + R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L + D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TASGVRGMKLPEDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L+ + G++ K S DR VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELAEYPTKGRATQGVVSIKVS--DRNGP--VVGAVQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 17/206 (8%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ + + G VK+ + F N++ G I + LR +D++ + + ++ FS
Sbjct: 641 NEKFIFMATGDGTVKKTSLDQFANVRANGLIAVN---LRDDDSLIGVDITDGNSDIMLFS 697
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLVMLTMNG 698
G V K+ R A+G V+ + L + +++ S I+P +E GD ++ +T NG
Sbjct: 698 KSGKVVRFNEDKVRPMGRTASG---VRGMKLPEDDQVVSLIVPSNE--GD--ILTVTQNG 750
Query: 699 YIKKVSLNLFSSI--RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCD 754
Y K+ L + + T G+++I++ G + V+ D+++ M + G ++ +
Sbjct: 751 YGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMM-MITDAGTLVRTRVA 809
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + RNT+G +R + + + +
Sbjct: 810 EVSQVGRNTQGVTLIRTAEDENVVGL 835
>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
Length = 830
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/837 (41%), Positives = 539/837 (64%), Gaps = 41/837 (4%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
PR+ ++ EEM S+I Y+MSV++ RALPDVRDG+KPVHRRIL+AM ELG++ KP+KK
Sbjct: 7 PRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDKPYKK 66
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
AR+VGEVLGK+HPHGD +VYD++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE
Sbjct: 67 SARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMRYTES 126
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
++ +S L+ D+++DTV+F+ N+D +++EP ++P+R P LL+NG SGIAVGMATNIPP
Sbjct: 127 KMSKIS-MELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATNIPP 185
Query: 262 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
H LGE++D + AL NP+ ++ EL+EY+PGPDFPTGG I+G GI AY TGRG ITVR
Sbjct: 186 HQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSITVRA 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
KTE+ +++K K+ +I+ E+PYQ NK+ L+EKIAELV +K +DGI+++RD SDR+GM I
Sbjct: 246 KTEI--VENKGKQ-SIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMNI 302
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI+++R A+P++++N+L++ TALQ+SF NM+ +++G+P+ + LK+ L+ +L + V+
Sbjct: 303 VIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVIR 362
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR +F L++ + R HI+EG+ + LD++D +I ++R + + A L + F+LS QA A
Sbjct: 363 RRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFELSYDQAQA 422
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LER K E K ++ +I +L +L+S + ++ +I++E++ +K +F+ R
Sbjct: 423 ILDMRLQRLTGLERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAIKEKFNDER 482
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+++ A L+D D+IP +++ I+ GY+KR+ +T+ Q RG GK V + ND
Sbjct: 483 RTVIS-ASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQKRG--GKGVQGMGTND 539
Query: 622 AMSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
DF+ H VL F+++G Y + Y+IPE R A G P + +L GE I+
Sbjct: 540 --DDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAINLLPFDPGETIS 597
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++IP+ F D +L +T +G K+ L+ F++IR G+ AI L GD L VR +
Sbjct: 598 TVIPIECFDDDSYLFFVTEHGIAKRTKLSAFANIRKGGLFAINLREGDSLHGVRLTDGNR 657
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
V + ++ GM I +R + R G + L + D + M+++ D
Sbjct: 658 EVMIGTKQGMAIRFPETDVRLMGRTAGGVKGITLSENDGVVGMEVV-------------D 704
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+ +V L V+E G+GKR PL +R G+ + ++ +V
Sbjct: 705 ENQSV--------LVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGP----LVSLK 752
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
+ D ++ +++V+ +G + R V IS R +GV L+R+ ++ + + +++
Sbjct: 753 MVAD---EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARVNI 806
>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
Length = 889
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/875 (41%), Positives = 528/875 (60%), Gaps = 62/875 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR L++MHEL +P+KK AR
Sbjct: 9 LPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQ+FSLRY L+ G GNFGS+D D AAAMRYTE RL
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLAD+D++TVNF PN+D S+ EPS+LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KIAHE-LLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+VD L+ NPEAT+ EL+E +P PDFPT G+I G G+ + YRTGRGR+ +R KT
Sbjct: 188 NEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAKTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E +D + +R +I+ E+PYQ NK L+E+IAELV K ++GISDIRDESD+SGMR+VIE
Sbjct: 248 FEDID-RGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+LY+ T LQ +F NMV ++DGQP+ + L+++L+ FL R VV RR
Sbjct: 307 LKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F L + +ER HI+EG+ V L N+D I I++ AP+ A A L +
Sbjct: 367 VFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVR 426
Query: 492 ----------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++LS+ QA IL M L+RLT LE+ K V E +
Sbjct: 427 AESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYR 486
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
+M QI L ++L+ + I +I +E+ ++ F R S +E ++ +LD D+I +
Sbjct: 487 EVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEH-NATELDTEDLITPQD 545
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S GY+K + + Q RG GK + +D + V HD++L FS+RG
Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + +++P+ +RN+ G P+V + LS GE+I I+PV +F F+ M T G +KK
Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKT 665
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
+L FS+ R GIIA+ L GD L V + S G + + +R + R
Sbjct: 666 ALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQA 725
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG M L++ ++ +M + PA E E + S GS +L +E+G+GKR P
Sbjct: 726 RGVRGMNLEENQQVIAMLVAPA------ETAGEGAQSGA-GS----VLTATENGYGKRTP 774
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+S + + G+I + S +R V ED +++L++ G + R +V
Sbjct: 775 ISEYTRHGRGTKGMIAIQTS--ERNGKVVAAALVAPED-----EIMLITTGGVLIRTRVD 827
Query: 884 DISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+I R +GV L+ + K+ + ++ E
Sbjct: 828 EIREMGRATQGVTLISVGEGNKLSGLQRVMESDAE 862
>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
Length = 878
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/839 (40%), Positives = 543/839 (64%), Gaps = 34/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-LELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG + +R K
Sbjct: 187 NMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIESRGGGRDR--IVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LK+ L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I I+RE+ ++ A +L+ F LSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +L+L+ +E+ E+K +F R
Sbjct: 425 ILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ QL+D D+IP +++++ +S Y+KR+ +T+ QNRG G +D
Sbjct: 485 RTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDD 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD VL+F+++G VY + Y++PE +R + G P+V ++ L E I+++I
Sbjct: 545 FVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV +T G IK+ +L+ F+ I G IAI+ DEL VR + +
Sbjct: 605 VKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + +I +R++SR G +RL+DGD++ +D+ +D+
Sbjct: 665 IGTAQASLIRFKEADVRAMSRIAAGVKGIRLRDGDEVIGLDV-----------ADDDNQD 713
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
+ L V+E G+GKR + +R +G+ K + + RL + V
Sbjct: 714 KI--------LVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTV----- 760
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E DE +++V+ G + R++V +IS+ R A+GV L+RL+ + + + + EPE
Sbjct: 761 ---EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVK-KEPE 815
>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP6]
gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP6]
Length = 797
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/829 (43%), Positives = 535/829 (64%), Gaps = 35/829 (4%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + EEM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E G++ +P+KK AR
Sbjct: 4 VQVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSAR 63
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD A+Y+++VRMAQ FS+RYPLI G GNFGSID DPAAAMRYTE RL
Sbjct: 64 VVGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLS 123
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++E ML ADI+++TV+FVPN+D S KEP++LP +LP LLLNG++GIAVGMATNIPPHNL
Sbjct: 124 KIAEEML-ADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNL 182
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
EL + LI NP+AT+ EL+ Y+PGPDFPTGG I+G GI AY TG+G I ++ K+E
Sbjct: 183 NELAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSE 242
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E +KS R +I E+PYQ NK+ L+E +AE+V+ L+GISD+RDESD+ G+R+V++
Sbjct: 243 IEE-GAKSTR--IIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVD 299
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
+K G + ++V+N L++ TALQ+S+ N + ++DG P+ + LKE L+ ++ +R VVERR
Sbjct: 300 IKTGFNANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRT 359
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
RF+L ++R HI+ G+++ L N+D VIRI++ AP+ + A L + F LSE+QA AILD
Sbjct: 360 RFELDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIEAFLLSEEQAKAILD 419
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LE++K V E+ L + I L ++LSS IL +I+ E+ EL +++ R +
Sbjct: 420 MRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLEILSIIKDELTELISKYGDERRTQ 479
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ +AD G++ + D+I +E+ + I+ GY+KR NT+ +Q RG G + + + ++
Sbjct: 480 IIEAD-GEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRMQRRGGRGVIGAETKTEEFVT 538
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
D D++L+F+D+G + + Y++P R A G +V +L L ERI IPV
Sbjct: 539 DVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGKSIVNLLQLEPDERIAGAIPVKS 598
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F ++V++T +G I K+ L FS+ R GI A+ L GD L + + + +A++
Sbjct: 599 FQAG-YIVLVTRSGNIVKMPLQAFSNPRKGGIKAVNL-KGDSLVSAKLTNGEKELLVATK 656
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I +R+ +R T G A+ L GD++ SMD+I
Sbjct: 657 FGKAIRFKEGDVRASNRGTMGVKAISLNMGDELISMDVIEPG------------------ 698
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
SG LL V+ G+GKR L + P R G G K + + R V ED
Sbjct: 699 -SGSTLLTVTNQGYGKRTELEEY---PQQRRGGKGVK-NIDARKGYVCCTTTVSEED--- 750
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
++++ ++ G + RI DI +Q R +GV +M ++ ++ + + I+
Sbjct: 751 --ELLVTTRDGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARIN 797
>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
Length = 830
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/814 (42%), Positives = 529/814 (64%), Gaps = 31/814 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+++ K +KK AR+V
Sbjct: 10 INISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKKSARIV 69
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEV+GK+HPHGD+AVYD++VRMAQDF+ RY LI GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 70 GEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYTEARMSKI 129
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S +L DI++DT+++ N+D S++EP +LPAR P LL+NGASGIAVGMATNIPPH LGE
Sbjct: 130 S-MEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPHQLGE 188
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D + A+ +P+ T+ EL+E +PGPDFPT G I+G GI AY TGRG ITVR K E+E
Sbjct: 189 IIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITVRAKVEIE 248
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ R +++ E+PYQ NK+ L+EKIA+LV +K ++GISD+RDESDR+GMRIV+E+K
Sbjct: 249 T--KPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIVMEVK 306
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+ ++++N+LY+ T+LQ+SF N++ +++G+PK + LK+ L +L+ + V++RR F
Sbjct: 307 KDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIKRRTAF 366
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LD+LD VI ++R + + A L EF LSEKQA AILDM
Sbjct: 367 ELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTEFSLSEKQAQAILDMR 426
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER+K +E + LM+ I +L+ +L+ + +L++I +E+ E+K RF+ R + +
Sbjct: 427 LQRLTGLEREKIEEEYQGLMQLIAELKAILADEEKVLEIIREELTEVKERFNDTRRTEIM 486
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
++D D+IP +++ ++ GY+KR+ +T+ Q RG G ND +
Sbjct: 487 VGGFENIEDEDLIPRQNVVITLTHNGYIKRLPLSTYRSQRRGGRGIQGMGTNENDFVEHL 546
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ HD +L+F+++G VY A+ Y+IPE +R A G P++ +L + GE + +IIPV +F
Sbjct: 547 LTTSTHDTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLEVEKGEWVNAIIPVEDFV 606
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
D +L T +G K+ L+ F++IR G+IA+ L DEL V+ + + ++ G
Sbjct: 607 DDWYLFFTTKHGISKRSPLSQFANIRKGGLIALGLRESDELISVKLTDGTKEMIIGTKKG 666
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
M+I +RS+ R G + + + D++ M+++ L
Sbjct: 667 MLIRFHETDVRSMGRTATGVKGISISENDEVVGMELLDEGLD------------------ 708
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
+L V+++G+GKR P +R G+ + DR + V E E
Sbjct: 709 ---VLVVTKNGYGKRTPAEEYRVQSRGGKGIKTCNIT--DRNGELVSVKTVTTE-----E 758
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
++L++ SG + R+ V IS R +GV L+RL
Sbjct: 759 DLMLITASGVLIRMSVDGISQMGRNTQGVKLIRL 792
>gi|345020605|ref|ZP_08784218.1| DNA gyrase subunit A [Ornithinibacillus scapharcae TW25]
Length = 836
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/831 (41%), Positives = 534/831 (64%), Gaps = 40/831 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + +E+ S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM++LG+ S K +KK AR+V
Sbjct: 12 INISQEVRTSFLDYAMSVIVSRALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEV+GK+HPHGD+AVY+++VRMAQ FS R PL+ GHGNFGS+D D AAAMRYTE R+ +
Sbjct: 72 GEVIGKYHPHGDSAVYEAMVRMAQPFSYRNPLVDGHGNFGSVDGDSAAAMRYTEARMSKI 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S LL DI++DT+++ N+D S++EP + PAR P LL+NGASGIAVGMATNIPPHNLGE
Sbjct: 132 S-MELLRDINKDTIDYQDNYDGSEREPVVFPARFPNLLVNGASGIAVGMATNIPPHNLGE 190
Query: 267 LVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
+D + A+ NP+ T+ E++E ++PGPDFPT G+IMG GI AY TGRG ITVR K E+
Sbjct: 191 TIDAVLAVSENPDITIDEIMENHLPGPDFPTAGIIMGRSGIRRAYETGRGSITVRAKVEI 250
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ + + +++ E+PYQ NK+ L+EKIAELV +K ++GI+D+RDESDR+GMRIV+EL
Sbjct: 251 E--ENPNGKATILVTELPYQVNKAKLIEKIAELVRDKRIEGITDLRDESDRNGMRIVMEL 308
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
+R + ++++N+LY+ TALQ++F N + +++G PK + +KE L +L+ + ++ RR
Sbjct: 309 RRDVNANVLLNNLYKYTALQTTFGVNTLALVNGIPKVLNIKECLYHYLEHQKVIIRRRTE 368
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L + + R HI+EG+ + LD+LD VI ++R + + A L FKL+EKQA AILDM
Sbjct: 369 FELKKAEARAHILEGLRIALDHLDEVISLIRNSKTADVAREGLMTRFKLTEKQAQAILDM 428
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
L+RLT LER+K +E L I +L+ +L+ + +LQ+I +E+ E+K ++ R + +
Sbjct: 429 RLQRLTGLEREKIENEYNELQRLIEELKAVLADEEKVLQIIREELTEIKEKYGDKRRTEI 488
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN--DAM 623
+ +D D+IP + +++ ++ KGY+KR+ +T+ +Q RG G+ + + N D +
Sbjct: 489 TVGGADFFEDEDLIPEENIVITLTHKGYIKRLPSSTYRVQKRG--GRGIQGMGTNEDDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ HD +L+F+++G VY + Y+IPE +R A G P++ +L + E I ++I V+
Sbjct: 547 EHLVSTSTHDTILFFTNKGKVYKVKGYEIPEYSRTAKGLPIINLLQIEKEEWINAVISVN 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF + T +G K+ SL+ F++IR G+IA+ L DEL VR + +A+
Sbjct: 607 EFKEEYNFFFTTKHGISKRTSLSQFANIRKGGLIALGLREDDELISVRLTDGTKDIMIAT 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
++G +I + +R + R G + L+D D++ SM+I+ L
Sbjct: 667 KHGYLIRFPEEQVRLMGRTAAGVRGISLRDDDEVVSMEILDEGLQ--------------- 711
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAED 861
+L V+ G GKR P +R G+ K S E D ++ V G
Sbjct: 712 ------ILHVTNKGLGKRTPEDQYRITKRGGKGIFTAKISEETGDIVSVKAVTG------ 759
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DE ++L++ +G + RI V IS R RGV L+RL+ ++ + + I
Sbjct: 760 ---DEDIMLITAAGVLIRIPVEGISQTGRNTRGVRLIRLQEGEEVATVAKI 807
>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
Length = 796
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/815 (43%), Positives = 525/815 (64%), Gaps = 38/815 (4%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+ V++ EEM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E G++ +P+KK AR
Sbjct: 4 IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD A+YD++VRMAQDFS+RY LI G GNFGS+D DP AAMRYTE RL
Sbjct: 64 IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ ML ADI++DTV+FVPN+D S KEP++LP+RLP LL+NG++GIAVGMATNIPPHNL
Sbjct: 124 KIAGEML-ADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNL 182
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+V L LI NP+A++ +L+ ++ GPDFPTGG I+G GI AY TGRG IT+R ++E
Sbjct: 183 REVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSE 242
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E S+ +I E+PYQ NK+ +VE IAELV+ +DGIS+IRDESDR G+R+V+E
Sbjct: 243 IEEGRRGSR---IIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVE 299
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+G +P +V+N L++ T L++++ + ++DGQP+ + LKE L+ ++++R V+ERR
Sbjct: 300 LKQGVNPQVVLNQLHKHTQLETTYGIINLVLVDGQPRTLTLKETLEQYINYRAEVIERRT 359
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
RF+L Q ++R HI+ GI++ L ++D VI ++R +PS S A L + F LSE+QA AILD
Sbjct: 360 RFELEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNRFGLSEEQARAILD 419
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS- 563
M L+RLT LE++K E++ L I +L+ +L+SR +L +I+ E+ EL + R +
Sbjct: 420 MRLQRLTGLEQEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDDRRTE 479
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+LE +S + + D+I ++E+ + I+ GY+KR + + +Q RG G + + D +
Sbjct: 480 ILESVESVRPE--DLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDFV 537
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+D D+++ F+DRG + R Y+IP ++ A G P+ +L L + ERIT IPV
Sbjct: 538 TDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVE 597
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
F D+++V+ T NG I K L FS+ R GI A+ L GD L R + +A+
Sbjct: 598 SFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAVNL-RGDSLVAARLTDGSRELIVAT 656
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I +RS R + G A+ L +GD++ SMD++
Sbjct: 657 KKGKAIRFHESDVRSSGRGSMGVKAINLSEGDELISMDVV-------------------- 696
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G L ++ G+GKR LS + PL R G G K R V + S
Sbjct: 697 -KEGETLFTITTQGYGKRTELSEY---PLQRRGGKGVKNIDTRRGDVVAAITVS------ 746
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D+ +++ ++ G + RI D+ +Q R +GV +M
Sbjct: 747 DDDGLLITTKEGVMIRIAASDVRVQGRATQGVKIM 781
>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
gi|158446993|gb|EDP23988.1| DNA gyrase, A subunit [Parvimonas micra ATCC 33270]
Length = 809
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/814 (42%), Positives = 539/814 (66%), Gaps = 35/814 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IV V++ +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRI++AM LGL KP+KK +
Sbjct: 10 IVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+A+YD+ VR+AQDF+LRYPL+ G GNFG+ID D AAA RYTE R+
Sbjct: 70 RLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+ M L DI++DTV+F PN+DE++KEP +LP++ P LL+NGA+GIAVGMATN+PPHN
Sbjct: 130 QKLALEM-LRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D C I N + ++ EL++++ GPDFPTG IMG GI AY TGRG+ITVR
Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGKITVRAVA 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E ++K++ +I+ EIPYQ NK+ L+ KI EL+++K ++GISD+RDES+ G+RIVI
Sbjct: 249 NIEEHNNKTR---IIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+P+I++N+LY+ T +Q++F + +++G+PK + LKE++ +++ + V+ RR
Sbjct: 306 ELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRDVITRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF+L + ++R HIVEG++ +D++D +I+I+R S S A L + F ++ QA++IL
Sbjct: 366 CRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIR--ASYSDAQEKLMERFGFTKIQAESIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M LRRL LER+K DE +L+++I +L+E+L + + IL +I++E+IE+K +F R +
Sbjct: 424 EMRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGDDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ + I D +++ ++++GY+KR+ +T+ +QNRG G + +D +
Sbjct: 484 EIKPNFDEIEIEELIKEED-VVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTTKEDDYV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V H +L+F+++G VY +AY+IPE R A G ++ +L L GE++ ++IPV
Sbjct: 543 DSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVNAVIPVK 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ D++L+M T G IK+ S+ LF +IR G+ AI LV DEL VR T +D + +
Sbjct: 603 DAGSDEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVDDDELIQVRVSTVEDSAMLVT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G+ I IR + R +G ++L D++ SM++
Sbjct: 663 KKGLAIKFELSDIREIGRTGQGVRGIKLDKDDEVVSMNL--------------------- 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S G LL +SE G+GKR S+++ G+ YK + D+ FVV +
Sbjct: 702 ASEGKHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTG--FVVSSKMV--NP 755
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
SDE +VL +QSG + R+ V+DI ++ R +GVI+
Sbjct: 756 SDEIIVL-AQSGGIIRLLVKDIPVKGRDTQGVII 788
>gi|406876268|gb|EKD25878.1| hypothetical protein ACD_79C01458G0002 [uncultured bacterium]
Length = 823
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/848 (42%), Positives = 531/848 (62%), Gaps = 35/848 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + + M ++I YSMSV++GRALPDVRDGLKPVHRRIL+AM+E+ L +PFKK A
Sbjct: 6 IIPIAIEDSMKKAFIDYSMSVIIGRALPDVRDGLKPVHRRILYAMNEMALYHNRPFKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEVLGK+HPHGD +VYD++VRM QDFSLRYPLIRG GNFGS+D DP AAMRYTE ++
Sbjct: 66 RVVGEVLGKYHPHGDTSVYDAMVRMTQDFSLRYPLIRGQGNFGSVDGDPPAAMRYTEAKM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
ALS ML DID++TV + NFDES EP +LP+++P LLLNG+SGIAVGMATNIPP N
Sbjct: 126 AALSSEML-EDIDKNTVGWRTNFDESLMEPEVLPSKIPNLLLNGSSGIAVGMATNIPPQN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
EL + LI NP T+++L+ + GPDFPTGG+I G GI +AY+TG G + +R +T
Sbjct: 185 FIELAKGIEMLIDNPMTTVEQLMAVIKGPDFPTGGIICGRRGIYEAYKTGHGSLIIRSRT 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+VE +K R +II EIPYQ NKS+L++ IA+LV K + GISD+RDESD+ GMRIVI
Sbjct: 245 QVE--QAKDGREVIIINEIPYQVNKSVLLKHIAKLVNQKEIAGISDLRDESDKDGMRIVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRG +V+N+L++ T LQ+SFSCNM+ I+DG+PK + LKE+L+A++ R +V+ +
Sbjct: 303 ELKRGEIAQVVINNLFKQTNLQTSFSCNMLSIIDGRPKVLNLKEMLEAWILHRVNVITKA 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R HI+EG + L N+D +I I++++ A L+ F LSE QA+AIL
Sbjct: 363 TQFDLEKAEKRAHILEGFKIALLNIDGIINIIKKSNDREKARTELQLSFNLSEVQANAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L ++T LE K E + L E+I + LL I +I+ + EL ++ R S
Sbjct: 423 DMRLYQITALEADKIEKEYQELQEKIKYYKSLLEDPSKIYAIIKTDTNELAAKYGDVRRS 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED ++ + + D+I ++ ++ +S GY+KR+ NT+ Q RG G + R D +
Sbjct: 483 TIEDEETDLVME-DLIADESCIITLSHAGYIKRVPANTYKAQKRGGRGVTGMITREEDYV 541
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
HD +L F+ G+++ R + IPE +R A G + +L++S+ E+I S+I V
Sbjct: 542 EHVYSAMTHDTMLIFTSTGMLHWLRVFHIPEASRVAKGVSIANLLNISNEEKIASMITVR 601
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF D+ +VM T G IKK +L+LFS+IR GIIAI + D L + D + +++
Sbjct: 602 EFTEDKTIVMATKKGVIKKSNLSLFSNIRKKGIIAINIKEEDALIQAAISSGKDDILLST 661
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G+ I + + + + R+ G ++LK D + SM+I+ + +
Sbjct: 662 SKGLSIRFNEERVSEMGRSATGVRGVKLKTDDSVISMEIVKSEILN-------------- 707
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAED 861
LL V E+G GKR P FR G+I K + D + A+ V
Sbjct: 708 ------LLIVCENGFGKRSPFEEFRITNRGGKGVISIKTTERNGDVVTALAV-------- 753
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ D+ +++++ SG + RI V+ ISIQ R +GV ++ L+ + KI S + I + E L
Sbjct: 754 -KDDDDIMVITSSGMMVRINVKGISIQGRNTQGVKIVNLKPNDKIVSITTIEKDDSEEAL 812
Query: 922 FLPSTSDK 929
+D+
Sbjct: 813 ESQEKTDE 820
>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
Length = 879
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/855 (42%), Positives = 543/855 (63%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P +LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIAHD-LLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLREVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+KS R +II E+PYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARGEVEA-DAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ SF NMV + GQPK M LKE+L+AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L+S + ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILASAERLMEVIREELEAMRDQFGDDRRTEI-TANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIAI L DEL V D + S G V+ + +R++ R+
Sbjct: 660 LQEFSRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAMGRSAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L +GDK+ S+ I+P +G+ +L V+++G+GKR
Sbjct: 720 GVRGIKLAEGDKVVSL-IVPRE----------------EGA----ILTVTQNGYGKRTAN 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G+I K + + VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGP----VVGAVQVDDS---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
+S+ R +GVIL+R
Sbjct: 812 VSVVGRNTQGVILIR 826
>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
Length = 821
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/840 (42%), Positives = 542/840 (64%), Gaps = 33/840 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD +VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITQEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +K K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-AKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R +V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLNVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K DE K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + + +R + R G ++LK GD + ++ +
Sbjct: 667 TKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLES----------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G+GKR ++ + + G IG K F D+ V V E
Sbjct: 710 -DESEAQVFTISEEGYGKRNEADAYN---VQKRGGIGTKNFRINDKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I +E E++
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIESE 820
>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
Length = 852
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/861 (40%), Positives = 553/861 (64%), Gaps = 42/861 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S + + + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ K +K
Sbjct: 6 SSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADKGYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
++ +S LL D++++TV++ N+D +KEP +LP+R P LL+NG SGIAVGMATNIP
Sbjct: 126 SKMSKIS-MELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH+LGE +D + AL NP T +EL+E++ GPDFPTGG+I+G GI AY TG+G + +R
Sbjct: 185 PHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVLIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + + +I+ EIP+Q NK+ L+EKIAELV +K +DGI+D+RDESDR+GMR
Sbjct: 245 SVVDIET--KPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A S+++N+LY+ TA+Q+SF NM+ ++DG+PK + LKE+L +L+ + V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +F+L++ ++R HI+EG+ + LD++D +I ++R + + A L +F L+E+Q+
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER K +E + L++ I +L +L++ IL++I++E++E+K+RFS
Sbjct: 423 AILDMRLQRLTGLERDKIEEEYQALVKLIEELRYILANEYRILEIIKEEMLEIKDRFSDK 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + +D D+IP + +L ++ GY+KR+ NT+ Q RG G+ V + N
Sbjct: 483 RRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRG--GRGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD +L+F+++G VY + Y+IPE R A G PLV +L +S E++T+
Sbjct: 541 EDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPEYGRTAKGLPLVNLLEISKEEKVTA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V EF D F T G K+ + +++IR G+IAI L DEL V+
Sbjct: 601 VIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELISVKLTDGTKE 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + +++G +I IRS+ R G +RL++GD + M+I+ D
Sbjct: 661 MVIGTKDGALIRFPETDIRSMGRTASGVRGIRLREGDAVVGMEIL-------------DP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+ NV L ++E G+GK+ S +R +G+ + + ++ L AV V +
Sbjct: 708 NDNV--------LVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGT 759
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
E ++L++ +G + R+ V DIS R +GV L+RL + +V +
Sbjct: 760 --------EDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLG-----DDEVVATVAKV 806
Query: 918 ETDLFLPSTSDKLATESGVSE 938
+ D+ +P + TE+ ++E
Sbjct: 807 KKDIDVPEELEDDNTETTINE 827
>gi|406886527|gb|EKD33540.1| hypothetical protein ACD_76C00006G0004 [uncultured bacterium]
Length = 873
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/832 (42%), Positives = 520/832 (62%), Gaps = 32/832 (3%)
Query: 72 SVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHEL 131
+++ G NV R + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL++M +
Sbjct: 60 AISQAGVNVIQR----SITDEMRDSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMWQS 115
Query: 132 GLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDAD 191
GL S FKKCA VVG+VLGK+HPHGD+AVYDSLVRMAQDFS+R PL+RG GNFGS+D D
Sbjct: 116 GLRSNAKFKKCATVVGDVLGKYHPHGDSAVYDSLVRMAQDFSMREPLVRGQGNFGSLDGD 175
Query: 192 PAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGI 251
AAA RYTE +LE ++E ML+ DI+++TVNFVPNFD S KEP++LPA+LP LLLNG GI
Sbjct: 176 SAAAYRYTEAKLERVAEEMLV-DIEKNTVNFVPNFDGSHKEPTVLPAKLPNLLLNGTVGI 234
Query: 252 AVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYR 311
AV MATNIPPHNLGEL D + A+I +P L+EY+ GPDFPTGG + I AY
Sbjct: 235 AVSMATNIPPHNLGELCDGVLAVIDDPSIATDSLIEYIKGPDFPTGGFVYNANDIKQAYA 294
Query: 312 TGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIR 371
TGRG I VR K ++E + + +++ EIPYQ NK+ L+EKIA LV K ++GI D+R
Sbjct: 295 TGRGGIVVRAKADIEEVHGAFR---ILVTEIPYQVNKATLLEKIAMLVREKKIEGIRDLR 351
Query: 372 DESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQ 430
DES +G+RIVIELK+ A P V+N LY++T LQ SF NMV ++DG QP+ + LK +++
Sbjct: 352 DESTSAGVRIVIELKKDAYPRKVLNRLYQMTQLQESFHYNMVALVDGIQPRVLNLKMIIE 411
Query: 431 AFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKD 490
FL R VV RR ++ L + K+R HI++G+ + L +D VI ++++ A L
Sbjct: 412 EFLKHRKEVVRRRTQYDLDKAKDRAHILDGLRIALAKIDDVIHTIKKSKDRDDARVNLIK 471
Query: 491 EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEV 550
FKLS+ QADAIL+M L++L LER K E + M+ I +L +L S + +L +I +EV
Sbjct: 472 RFKLSQLQADAILEMRLQQLANLERLKIEQEYEEKMKIIAELTAILKSEQKMLAVIRKEV 531
Query: 551 IELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTI 610
+++K +++PR + + + D+IP+D ++ I+ GY+KR+ P+TF Q RG
Sbjct: 532 VQIKESYASPRRTEIVKHGVKEFSMEDVIPDDATVIMITRDGYIKRLPPDTFRTQARGGK 591
Query: 611 GKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
G + + DA+ + I H +V++ + RG V+ +AY +PE R A G LV L L
Sbjct: 592 GVAGMTTKDEDAVENIISTTNHQNVMFLTSRGRVFRMKAYDVPETKRTAKGQALVNFLQL 651
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE++++I+ + + ++LVM+T G IKK + F +IR++G+IAI L GD+L+WV
Sbjct: 652 GPGEKVSAILTADDISKYKYLVMVTSKGTIKKTDMTAFENIRSSGLIAISLRDGDDLEWV 711
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ T D + + S G I + IRS+ R G +RLK + + MD++ KD
Sbjct: 712 KPSTGTDDIFLVSSEGQSIRFNEKAIRSMGRTASGVRGIRLKGKNIIVGMDVVSKEAQKD 771
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLA 849
LL + ++G+GKR + ++ G+ +A+ ++
Sbjct: 772 ----------------SAQLLIIMDNGYGKRTVIDEYKVQGRGGSGIKTANVTAKTGKII 815
Query: 850 AVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ VV G+ + ++++SQ+G V R + I + R +GV +MR +
Sbjct: 816 SAHVVS------GKDERDMLVISQAGQVIRTPLESIPVLGRATQGVRIMRFK 861
>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
gi|425068525|ref|ZP_18471641.1| DNA gyrase subunit A [Proteus mirabilis WGLW6]
gi|425072010|ref|ZP_18475116.1| DNA gyrase subunit A [Proteus mirabilis WGLW4]
gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
gi|404597813|gb|EKA98306.1| DNA gyrase subunit A [Proteus mirabilis WGLW4]
gi|404599357|gb|EKA99812.1| DNA gyrase subunit A [Proteus mirabilis WGLW6]
Length = 877
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/856 (41%), Positives = 540/856 (63%), Gaps = 66/856 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D ++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A + N + T++EL+EY+ GPDFPT +I G GILDAYRTGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + ++E D K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRAQADIE-TDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+KR A +V+N L+ T +Q SF NMV + GQPK + LKE++ AF+ R
Sbjct: 301 MRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + V L N+D VI ++R+AP+ + A AAL
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSV 420
Query: 489 -------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++ L+E+QA AILD+ L++LT LE +K +DE +
Sbjct: 421 SAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYR 480
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
L+ QI +L +L S + ++ +I +E+ +K +++ PR + + + ++ ++ D+I +
Sbjct: 481 ELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITE-NTADINIEDLINEEN 539
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG
Sbjct: 540 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGR 599
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ +F+ M T +G +KK
Sbjct: 600 LYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGKFVFMATASGTVKKT 659
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
L FS R+ GIIA+ L GDEL V + + S +G V+ + + +R + R
Sbjct: 660 PLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTA 719
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
G M+L D DK+ S+ IIP +G +L V+E+G+GKR
Sbjct: 720 TGVRGMKLVDDDKVVSL-IIP------------------RGEGD--ILTVTENGYGKRTV 758
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
S + G+I K S + VVG A E +Q+++++ +GT+ R +V
Sbjct: 759 QSEYPTKNRATQGVISIKVSERNGK----VVG---AIQVEETDQIMMITNAGTLVRTRVS 811
Query: 884 DISIQARYARGVILMR 899
++SI R +GV L+R
Sbjct: 812 EVSIVGRNTQGVTLIR 827
>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
13280]
gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
13280]
Length = 929
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/832 (43%), Positives = 524/832 (62%), Gaps = 38/832 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E EM S+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ +P KK A VG
Sbjct: 76 EFGREMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVG 135
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EV+GK+HPHGD+AVYD++VR+AQ FS+R PLI GHGNFG+ID D AAAMRYTE RL A
Sbjct: 136 EVIGKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRL-AKP 194
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+ +DTV++ PN+DES EP+ LPAR P LL+NG+ GIAVGMATNI PHN+GE
Sbjct: 195 AMELLRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEA 254
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
V+ C LI +P+AT+ EL+ MPGPDFPTG LIMG GI +Y TGRG ITVR K VE
Sbjct: 255 VEATCYLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVE- 313
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
+K+ R ++ EIPY NK L EKIA LV K ++GISD+RDES + G+R+VIELK+
Sbjct: 314 -STKTGRNRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKK 372
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
G P +V+N+LY+ T+LQ++F N + +++G PK++ L+E+LQ ++D + VV RR RF
Sbjct: 373 GVIPQVVLNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFD 432
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + + R HI+EG + LD++D VI I+R + +++ AS+ L + F S +Q AIL+M L
Sbjct: 433 LKKAQARAHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKL 492
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RRLT LER K +E + L I E+LL+ + IL +I++E+ E+ +F R + +
Sbjct: 493 RRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGDKRRTQITG 552
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
A+ L+ D+I +++M++ I+ GYVKR+ ++ Q RG G S L+ +D + +
Sbjct: 553 AEK-DLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGGKGVSGVNLKEDDVIDEMF 611
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+ H++VL+FS +G VY + +++PE TR A GT +V +L DGE+I S+I EF
Sbjct: 612 IASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCREFPE 671
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
D++L+ T +G +KK ++ + R GIIAI + GD L VR D + MA+ G
Sbjct: 672 DEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDRLLGVRRVKPGDKIIMATTAGK 731
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807
I+ S D +R+ R+T G + +K ++ M+I +N G
Sbjct: 732 AIMFSEDQVRATGRDTSGVRGIGMKADAEVLGMEI-----------------TNGSGE-- 772
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLAEDGES 864
L ++E G+GKR P++ + + NR G Y DR LAA+ VVG
Sbjct: 773 --LFVITERGYGKRTPVADYPE--QNRGGQGVYTIQMTDRKGALAAMKVVG--------P 820
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+++++++ TV R+K +IS R +GV +M ++ ++ + + ++ +
Sbjct: 821 QHELLIITEGATVLRVKTAEISQTGRATQGVKMMSVDEGDRVTAVARMTAAK 872
>gi|343520400|ref|ZP_08757369.1| DNA gyrase, A subunit [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397358|gb|EGV09892.1| DNA gyrase, A subunit [Parvimonas sp. oral taxon 393 str. F0440]
Length = 809
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/814 (42%), Positives = 540/814 (66%), Gaps = 35/814 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+V V++ +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRI++AM LGL KP+KK +
Sbjct: 10 VVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+A+YD+ VR+AQDF+LRYPL+ G GNFG+ID D AAA RYTE R+
Sbjct: 70 RLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+ M L DI++DTV+F PN+DE++KEP +LP++ P LL+NGA+GIAVGMATN+PPHN
Sbjct: 130 QKLALEM-LRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D C I N + ++ EL++++ GPDFPTG IMG GI AY TGRG+ITVR
Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGKITVRAVA 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E ++K++ +I+ EIPYQ NK+ L+ KI EL+++K ++GISD+RDES+ G+RIVI
Sbjct: 249 NIEEHNNKNR---IIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+P+I++N+LY+ T +Q++F + +++G+PK + LKE++ +++ + V+ RR
Sbjct: 306 ELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQREVITRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF+L + ++R HIVEG++ +D++D +I+I+R S S A L + F ++ QA++IL
Sbjct: 366 CRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIR--ASYSDAQEKLMERFGFTKIQAESIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M LRRL LER+K DE +L+++I +L+E+L + + IL +I++E+IE+K +F R +
Sbjct: 424 EMRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGDDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ + I D +++ ++++GY+KR+ +T+ +QNRG G + +D +
Sbjct: 484 EIKPNFDEIEIEELIKEED-VVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTTKEDDYV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H +L+F+++G VY +AY+IPE R A G ++ +L L GE++ ++IPV
Sbjct: 543 DSLFITSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVNAVIPVK 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ D++L+M T G IK+ S+ LF +IR G+ AI LV DEL VR T +D + +
Sbjct: 603 DAEADEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVEDDELIQVRVATVEDSAILVT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G+ I + IR + R +G ++L D++ SM++
Sbjct: 663 RKGLAIKFALSDIREIGRTGQGVRGIKLDKDDEVVSMNL--------------------- 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S G LL VSE G GKR S+++ G+ YK + D+ FVV +
Sbjct: 702 DSEGKHLLVVSEFGFGKRTLTSNYKVQNRGGKGVKTYKVT--DKTG--FVVSSKIV---N 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
+++++++SQSG + R+ V+DI ++ R +GVI+
Sbjct: 755 PNDEIIVLSQSGGIIRLLVKDIPVKGRDTQGVII 788
>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
Length = 986
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/816 (42%), Positives = 528/816 (64%), Gaps = 32/816 (3%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P +L EEM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM+E + +P KK A
Sbjct: 134 PTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSAWT 193
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEV+GK+HPHGD+++Y+++VRMAQDFS+R PLI GHGNFGSID DPAAAMRYTE RL
Sbjct: 194 VGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRLTH 253
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
+ ML D+D++TV+ PN+DES +EP++LPAR P LL+NG++GIAVGMATN+PPHNL
Sbjct: 254 AAMDML-RDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNLQ 312
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ +C +I NP +TL++L+ +PGPDFPTGG+IMG GI DAY+TGRG +T+R K +
Sbjct: 313 EVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVHI 372
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E ++ R ++I EIPYQ NKS+L E+IA+ V K ++GISD+RDES+R GMRIVI+L
Sbjct: 373 ENT-GRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDL 431
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
K+GA P +V+N+LY+ T LQ+SFS + ++DG P+ + L ++++ ++ + VV RR +
Sbjct: 432 KQGAVPQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTK 491
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F L++ ++R HI+EG+++ +DN+D V+ I+R + ++ A + + + F + + Q +AIL M
Sbjct: 492 FDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFGIDDIQGEAILQM 551
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT L R + + L +QI L +LL + + +L++I++E++++ R+++PR + +
Sbjct: 552 RLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASPRRTKI 611
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
++ LD D+I ++M++ ++ Y+KR+ T+ Q RG G L+ ND + D
Sbjct: 612 STNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQGLSLKDNDFVED 671
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
V HD+VL+F+++G VY + +++P +R + G+ LV +L L++ E T++I +F
Sbjct: 672 LFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDEHPTAVITTRDF 731
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
+Q+LV T G +KK ++ + R G+IAI L GDEL VR + + + +
Sbjct: 732 PDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCEGNRIILCTSA 791
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G I+ S + +R SRNT G + LK+ M M+I SN KG
Sbjct: 792 GKAIMFSEEDVRPTSRNTSGVKGISLKNNAYMLGMEI-----------------SNGKGD 834
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLAEDGES 864
LL ++E+G+GKR P+S + G+ S + L A VVG
Sbjct: 835 ----LLVITENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGALVACRVVG--------P 882
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++++S+ G + R+K DIS R +GV +M L
Sbjct: 883 QHELMIMSEEGVMIRVKSMDISSSGRATQGVKIMNL 918
>gi|421874945|ref|ZP_16306544.1| DNA gyrase, A subunit [Brevibacillus laterosporus GI-9]
gi|372456142|emb|CCF16093.1| DNA gyrase, A subunit [Brevibacillus laterosporus GI-9]
Length = 848
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/852 (40%), Positives = 545/852 (63%), Gaps = 33/852 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R +++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ K F+
Sbjct: 5 TSRFPKIDISQEMRDSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKAFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVG+V+ K+HPHGD A+Y+++VR+AQDF++RY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSANVVGQVMAKYHPHGDTAIYETMVRLAQDFNMRYMLVEGQGNFGSVDGDRAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R ++ ML DID+DTV+F+PN+D ++EP++LP+R P LL+NG++GIAVGMATNIP
Sbjct: 125 SRFSKIALEML-RDIDKDTVDFIPNYDGHEEEPTVLPSRFPNLLVNGSAGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + A+I NPE T+ EL++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLREVIDGVSAMIDNPEITVAELMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT +E + K++ +I+ EIPYQ NK+ LVEKIAELV K +DGI+D+RDESDR GMR
Sbjct: 244 AKTNIEENNGKAR---IIVTEIPYQVNKARLVEKIAELVREKKIDGITDLRDESDRKGMR 300
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R P +V+N+L++ T +QS+F NM+ +++ +PK + L+E++ +L+ + +V
Sbjct: 301 IVIELRRDIVPKVVLNNLFKHTQMQSTFGVNMLALVNSRPKTLNLREMIYHYLEHQRVIV 360
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L Q + R HI+EG+ + LD++D +I ++R + A AL + F LS +QA
Sbjct: 361 RRRTEYELRQAEARAHILEGLRIALDHIDEIISLIRASRMAEEARNALIERFGLSHEQAQ 420
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K E + L+ +I +L+ +L+ I +I +E+ +K +F
Sbjct: 421 AILDMRLQRLTGLEREKIEAEYQELLIKIAELKSILADDNKIYSIIREEMNAIKEKFGDD 480
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+IP +E++++++ GYVKR+ T+ Q RG G + +
Sbjct: 481 RRTAITIGED-MIEDADLIPEEEVVISLTHSGYVKRLPVTTYRSQKRGGRGIQGIGTKDD 539
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD +L+F+ +G VY R ++IP+ +R A GTP++ ++ + GE ++++I
Sbjct: 540 DFVEHLCITNSHDTLLFFTSKGKVYRLRGFEIPDLSRTAKGTPIINLIQIEKGETVSAVI 599
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF DQF+ T G +KK L F +IR G+ A+ L DEL VR + +
Sbjct: 600 PVKEFREDQFIFFATKQGIVKKTDLKSFENIRRGGLFAVNLREDDELINVRLTDGNQQII 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M ++ GM + + +R++ R G + L D + MD+I ED+
Sbjct: 660 MGTKQGMSVRFNEGDVRTMGRTATGVKGITLDSNDVVIGMDVI-----------REDAE- 707
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+ G+GKR P+S +R G+ + + + VVG +
Sbjct: 708 ---------VLIVTAKGYGKRTPVSEYRIQTRGGKGIKTHNVTER----SGQVVGLKVV- 753
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++DE +++V+ +G + R++++ IS+ RY +GV L+RL ++ S + + +E +++
Sbjct: 754 --QADEDLMIVTITGIIIRMEIKGISVMGRYTQGVKLIRLGDEEEVVSIATVEASEEDSE 811
Query: 921 LFLPSTSDKLAT 932
L + + +L T
Sbjct: 812 NNLCTEAAELET 823
>gi|295694694|ref|YP_003587932.1| DNA gyrase subunit A [Kyrpidia tusciae DSM 2912]
gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Kyrpidia tusciae DSM 2912]
Length = 810
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/819 (43%), Positives = 536/819 (65%), Gaps = 32/819 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ EE+ S++ Y+MSV++ RA+PDVRDGLKPVHRRIL+ MH LG++ KP+KK
Sbjct: 6 KILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG+VL KFHPHGD AVYD+LVR+AQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 66 AWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI ++TV+F N+D S+KEP +LP+R P +L+NG++GIAVGMATNIPPH
Sbjct: 126 LSKIA-LELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI +P+A ++EL++++ GPDFPTG LI+G GILDAYRTGRG I +R
Sbjct: 185 NLGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILRAA 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T++E ++ + +++ EIPYQ NK+ LVEKIAELV K +DGI+D+RDESDR GMRIV
Sbjct: 245 TQIE--EASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R P +V+N+L++ TALQ+S+ M+ ++DG+P+ + L E+L+ +L + V+ R
Sbjct: 303 IELRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R + L + + R HI+EG+ + LD++D VI ++R + + A L ++F LSE+QA AI
Sbjct: 363 RTTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQFHLSEEQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+E+I +L +L+ K IL +I +E++++K ++ R
Sbjct: 423 LDMRLQRLTGLERQKIDEEYAELVEKIKELRAILADEKKILGVIREELLDIKAKYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A G+++D D+IP +E+ + +S GY+KR + + Q RG G + + D
Sbjct: 483 TRIT-AGEGEIEDEDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +H ++L+F+++G VY +AY++PE R A GTP+V +L++ GE+I++++P+
Sbjct: 542 VEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
G Q+L+M T G IKK L+ F +IR G++AI L DEL VR + +
Sbjct: 602 RSTDGGQYLIMATREGTIKKTPLDEFENIRRGGLVAISLRENDELIAVRMTDGSRELILG 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+++GM I +RS+ R G A+ L+ GD + M +
Sbjct: 662 TRSGMAIRFPETDVRSMGRGAAGVKAVDLQGGDVVIDM-----------------DVVDP 704
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
G +L V+ G GKR P++ +R G+ +A R + VV + +
Sbjct: 705 DGD----VLVVTNRGFGKRTPITEYRHQSRGGKGIRTLHVTA--RTGS--VVSLKMVRN- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DE V++++ +G R+ V +IS+Q R +GV L+ L+
Sbjct: 756 --DEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLK 792
>gi|445058377|ref|YP_007383781.1| DNA gyrase subunit A [Staphylococcus warneri SG1]
gi|443424434|gb|AGC89337.1| DNA gyrase subunit A [Staphylococcus warneri SG1]
Length = 892
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/865 (40%), Positives = 554/865 (64%), Gaps = 39/865 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQ+FS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E K L+ I +LE +L+ + +LQL+ E+ E+K R+ R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYKELLAYIDELEAILADEEVLLQLVRDELTEIKERYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D +LV T G +K+ SL+ FS I G IAI DEL VR ++ +
Sbjct: 605 VKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTDGEEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFSEKALRPLGRTAAGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R + +
Sbjct: 710 N----SEDEVLVVTENGYGKRTPVADYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LMRL G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRL---GDDQFVSTVAKVKQED 814
Query: 920 DLFLPST---SDKLATESGVSEMLQ 941
D + SD ES E+++
Sbjct: 815 DADEAESDIESDNAQGESSNEEVIE 839
>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
DSM 5476]
gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
DSM 5476]
Length = 868
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/833 (41%), Positives = 534/833 (64%), Gaps = 35/833 (4%)
Query: 75 TVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 134
T PN+ +++PV++ EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+ ++E G+
Sbjct: 6 TFDPNIG-KVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIF 64
Query: 135 SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAA 194
K ++K A VG VLG++HPHGD +VYD+LVRMAQDFSLRYPL+ GHGNFGS+D DP A
Sbjct: 65 PDKAYRKSADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPA 124
Query: 195 AMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVG 254
A RYTE ++ +S ML DI+++TV F N+D+ KEP +LPAR P LL+NG++GIAVG
Sbjct: 125 AYRYTEAKMSKISMEML-TDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVG 183
Query: 255 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314
MATNIPPHNL E++D + LI NP+A L +++ + GPDFPT G+IMG GI AY TGR
Sbjct: 184 MATNIPPHNLREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAAYATGR 243
Query: 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDES 374
G+I VR + E+E +++ R +++ E+PYQ NK+ L+E IA V++K ++GIS +RDES
Sbjct: 244 GKIQVRARAEIEEMNNG--RFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDES 301
Query: 375 DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLD 434
+R GMRIVIELKR A+P I++N LY T +Q +F + +++G PK M LKE+L+ +++
Sbjct: 302 NREGMRIVIELKRDANPQIILNKLYSFTQMQETFGVINLALVNGVPKVMTLKEMLEHYIE 361
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
F+ V+ +R + L + +ER HI+EG+ + LD +D VI+ +R + + + + L + F L
Sbjct: 362 FQSEVIRKRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIERFGL 421
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
E QADAI+ M L +L+ LER K +E L+E+I + E +L IL ++ +E+ ++
Sbjct: 422 DELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELAAIR 481
Query: 555 NRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV 614
++F R + + A SG++D D+IP ++ ++ ++ GY+KR + + Q RG G +
Sbjct: 482 DKFGDERRTEIL-AVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKTQKRGGRGVAG 540
Query: 615 GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGE 674
K R D + + HD+VL+ ++RG +Y + Y+IPE R + GT +V +L + E
Sbjct: 541 MKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSKGTNIVNLLPIEGDE 600
Query: 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
++TS+I +++F DQ+LVM+T +G IK+ L+ + ++R G+IAI L+ GDEL WVR
Sbjct: 601 KVTSMIRITDFDPDQYLVMVTKSGMIKRTVLDAYKNVRKNGLIAISLLEGDELAWVRLTN 660
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+ + +A++NGM I + R LSR+ +G A++L+ D++ M
Sbjct: 661 GNSQLIVATRNGMAIRFDENDARPLSRSAKGVRAIKLRGDDEVVGM-------------- 706
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFV 853
+ G ++ V++ G G+R + +R G I Y S E + AV V
Sbjct: 707 -------ARLREGATVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVSDEKGHVVAVKV 759
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
V + D+ ++L+S G + RI+V D+++ +RYA GV +MR++ ++
Sbjct: 760 V--------DEDDDLILISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARV 804
>gi|355574872|ref|ZP_09044508.1| DNA gyrase, A subunit [Olsenella sp. oral taxon 809 str. F0356]
gi|354818348|gb|EHF02840.1| DNA gyrase, A subunit [Olsenella sp. oral taxon 809 str. F0356]
Length = 926
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/828 (43%), Positives = 525/828 (63%), Gaps = 37/828 (4%)
Query: 87 VELHE---EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+++HE EM S+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ KP KK A
Sbjct: 79 LQMHEFGHEMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSA 138
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VGEV+GK+HPHGD+AVYD++VR+AQ FS+R L+ GHGNFG+ID D AAAMRYTE RL
Sbjct: 139 WTVGEVIGKYHPHGDSAVYDAMVRLAQWFSMRVTLVDGHGNFGNIDGDSAAAMRYTESRL 198
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A LL D+++DTV++ PN+DES +EPS+LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 199 -ARPAMELLRDLNKDTVDWNPNYDESLQEPSVLPARFPNLLVNGSQGIAVGMATNIPPHN 257
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D C LI NP+AT +L+ MPGPDFPTG +IMG+ GI AY TGRG +TVR K
Sbjct: 258 LGEAIDATCLLIDNPDATTDDLMRVMPGPDFPTGAVIMGSEGIRQAYETGRGILTVRAKA 317
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
VE +K R ++ E PY NK L EKIA+LV +K ++GISD+RDES+R G+R+VI
Sbjct: 318 HVE--STKGGRNKLVFTEFPYGVNKGTLQEKIAQLVNDKRIEGISDMRDESNRKGLRLVI 375
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+G P +V+N+LY+ ++LQ+SF + +++G PK + LKE+LQ ++D + VV RR
Sbjct: 376 ELKQGVIPEVVLNNLYKYSSLQTSFGIIDLALVNGVPKLLSLKEMLQCYIDHQVEVVTRR 435
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF L++ + R HI+EG+++ LDN+D VI I+R + +++ AS + F +++Q AIL
Sbjct: 436 TRFDLAKAQARAHILEGLLIALDNIDEVISIIRSSRTDTEASERMIARFGFTKEQTTAIL 495
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M LRRLT LER K +E L I EELL+ + IL +I+ E+ E++ +++ R +
Sbjct: 496 EMRLRRLTGLERDKIQEELDGLRRAIAYYEELLADERKILGVIKTEMGEIREKYADKRRT 555
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ DA LD D+I ++M++ ++ GYVKR+ +T+ Q RG G L+ ND +
Sbjct: 556 TISDAPVA-LDVEDLIAEEDMVITVTHSGYVKRLPVSTYRSQKRGGKGIQGLSLKDNDFV 614
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
D V HD+VL+F+++G VY + +++P +R+A G+ L+ ++ L++GER ++I
Sbjct: 615 EDLFVASTHDYVLFFTNKGKVYRVKVHELPIGSRHARGSALINVIPLAEGERAAAVITTR 674
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF D++L+ T G +KK +++ + R GIIAI L DEL VR + V + +
Sbjct: 675 EFPEDEYLLFATSKGMVKKTAMSDYDKSRRDGIIAINLKKDDELVNVRRVKQGENVILCT 734
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G I +R R+T G + L+D +M M+I SN K
Sbjct: 735 DAGKAIRFDEGEVRPTGRDTSGVRGITLRDDARMLGMEI-----------------SNGK 777
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLAEDG 862
G LL V+E G+GKR P+S + + G+ S + L A VVG
Sbjct: 778 GD----LLVVTEKGYGKRTPVSEYPEHKRGGQGVFTIAMTSKKGNLVACRVVG------- 826
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
++++VS+ G V R+K DIS+ R +GV +M + S ++ + +
Sbjct: 827 -PQHELMMVSEEGVVIRVKTSDISLLGRSTQGVKIMNIGESDRVSAVA 873
>gi|337744371|ref|YP_004638533.1| protein GyrA [Paenibacillus mucilaginosus KNP414]
gi|336295560|gb|AEI38663.1| GyrA [Paenibacillus mucilaginosus KNP414]
Length = 835
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/838 (41%), Positives = 538/838 (64%), Gaps = 33/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ +++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRILFAM ELG+S KP+KK
Sbjct: 8 QVKEIDIGSEMRTSFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI+++T++FVPN+D ++EP++LP+R P LL+NG SGIAVGMATNIPPH
Sbjct: 128 LSKIA-MELLRDINKETIDFVPNYDGEEQEPAVLPSRFPNLLVNGLSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + LI NPE T EL++ + GPDFPTGG IMG GI AY TGRG + +R K
Sbjct: 187 NLTEVINGVQQLIQNPEVTPLELMQSIKGPDFPTGGYIMGREGIKQAYATGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T L++ + +I+ E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDR+GMRIV
Sbjct: 247 T---LIEENGNKARIIVYELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+LY+ TA+QS+F M+ +++G+PK + L++VL +L+ + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLYKQTAMQSNFGIIMLALVNGEPKVLNLRDVLFHYLEHQKVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L F LS QA AI
Sbjct: 364 RTEFELRKAEARAHILEGLRIALDHLDEVIALIRASRTTEEAREGLMTRFGLSFDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I + + +L+ + +L +I +E+ E+K +F R
Sbjct: 424 LDMRLQRLTGLERQKIEEEYAELLKKIAEYKAILADEQLVLAIISEELNEIKEKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + + ++D D+IP ++++ I+ GY+KR+ T+ Q RG G + D
Sbjct: 484 SEITIGEE-SIEDEDLIPQSDVVITITHTGYIKRLPVTTYRSQRRGGKGIMGMDTKDKDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H ++L+F+++G VY +AY+IP+ +R A GTP++ ++ + GE I ++IPV
Sbjct: 543 VEHLFVTNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F D++L + G +KK SL+ +S+IR G+IAI L D+L VR + + M
Sbjct: 603 ESFDSDKYLFFASKKGLVKKTSLDDYSNIRKGGLIAITLREDDDLIGVRLTDGNQSIIMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I + +R + R+ G ++L + D + MD++ H+D
Sbjct: 663 TAQGMSIHFPENEVRPMGRSATGVKGIQLDEEDHVIDMDVV----HED------------ 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G GKR P+S +R G+ ++++ VVG + ++
Sbjct: 707 -----NSVLIVTSKGFGKRTPVSEYRLQSRGGKGIKTLNVTSKNGP----VVGLKVVQE- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+E +++++ GTV R + IS+ R +GV L+ + ++ + + + ++ D
Sbjct: 757 --EEDLMIITAFGTVIRTSMSGISLMGRNTQGVRLINIREEDEVSTLARVEKSDDPAD 812
>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
Length = 865
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/838 (42%), Positives = 533/838 (63%), Gaps = 37/838 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S RI+P+ + +EM +YI Y+MSV++ RALPDVRDGLKPVHRR+L+ M +LGL KPFK
Sbjct: 5 SSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKPFK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD +VYD++VRMAQ +SLRYPL+ G GNFGSID D AAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL+ +++ LL+D+++DT++F PNFDES KEP++LP ++P LL+NG SGIAVGMATN+P
Sbjct: 125 ARLKRVADE-LLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNMP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+VD + A + N + T++EL++Y+P PDFPTGG+I G G+ A TGRGR+ +R
Sbjct: 184 PHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
G E+E +KS R +I+ EIPY NK+ L+EK A LV+ K ++GISDIRDESDR+GMR
Sbjct: 244 GVAEIET--TKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV ELKR A P + +N LY+ TALQSSF N V ++ G+P+ + L++++ F++ R V+
Sbjct: 302 IVYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVI 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +F+L + K R+HI+EG+++ LDN+D VI ++R + TA AL ++F+LSE QA
Sbjct: 362 YRRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEKFELSEIQAK 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILD+ L+RLT +ER K V E K + E I +LE +L+ + + +I++E+ E+K+R+
Sbjct: 422 AILDIRLQRLTAMERDKIVAEHKQISELIKELEAILADKLLRVDIIKEELTEMKDRYGDA 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + +E + L D D+IP +EM++ IS GY+KR + + QNRG +G + +
Sbjct: 482 RRTDIEHM-ADDLTDEDMIPVEEMVITISHFGYIKRTSLDEYRTQNRGGVGSRGTSKKDD 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D V HD++L F++ G V+ + Y IPE + A G + +L + G+ I ++I
Sbjct: 541 DFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVAKTAKGRAIQNLLQMEKGDSIRAVI 600
Query: 681 PVSE-----FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
V + + + +LVM T G IKK L FS R GI AI + D+L V+
Sbjct: 601 NVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRPRQNGIHAITINEDDQLLDVKLTNG 660
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
++ + +A ++G I D +RS+ R G + L DGD + ++ A
Sbjct: 661 ENNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITL-DGDDNRVVGMVCVA--------- 710
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVV 854
D S LL VSE+G+GKR + +R G+I + + + RL A+
Sbjct: 711 RDDAS---------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQITDKTGRLVAI--- 758
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
++ + ++L++++G R+ + D+ + R +GV L++L I S + +
Sbjct: 759 -----KEAVDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKV 811
>gi|404418104|ref|ZP_10999882.1| DNA gyrase subunit A [Staphylococcus arlettae CVD059]
gi|403489507|gb|EJY95074.1| DNA gyrase subunit A [Staphylococcus arlettae CVD059]
Length = 891
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/855 (40%), Positives = 548/855 (64%), Gaps = 32/855 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EP++LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKIT-LELLRDINKDTIDFIDNYDGNEREPAVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + + HNP+AT+ EL+E + GPDFPTG LIMG GI AY TGRG I +R +
Sbjct: 187 NLTEVINGVLKVSHNPDATIAELMEDIQGPDFPTGALIMGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+PYQ NK+ ++EKIAEL +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+P+ + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPRLINLKEALVEYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ F+LSE+QA A
Sbjct: 365 RRTEYNLKKAQDRAHILEGLRIALDHIDEIITTIRESETDKVAMASLQERFELSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K DE L+ I +L+E+L+ + +LQ++ E+I+++ RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEDEYNELVAYIKELQEILADEEKLLQIVRDELIDIRERFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
L+ ++ ++D D+IP +++++ +S Y+KR+ +T+ Q+RG G D
Sbjct: 485 LTEIQLGGFDNIEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQHRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDNDENISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + +
Sbjct: 605 VKDLESEDDFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKNDDELIAVRLTDGEQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ A
Sbjct: 665 IGTAHASLIRFHETSLRPLGRTASGVKGITLREGDQVVGLDVADDA-------------- 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
S +L V+E+G+GKR P++ +R L+ G G K + V ++
Sbjct: 711 -----SDDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITEKNGNIVCITTVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
GE D +++V+ SG + RI V+DIS R A+GV L++L + + + + E E
Sbjct: 762 -GEED--LMVVTNSGVIIRIDVQDISQNGRAAQGVRLIKLSDEQFVSTVAKVD-EEDEAS 817
Query: 921 LFLPSTSDKLATESG 935
+ + ATE+G
Sbjct: 818 EAVETEEATSATETG 832
>gi|420489185|ref|ZP_14987780.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-11]
gi|420522945|ref|ZP_15021366.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-11b]
gi|393106025|gb|EJC06570.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-11]
gi|393128943|gb|EJC29382.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-11b]
Length = 828
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKTGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
Length = 836
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/848 (41%), Positives = 534/848 (62%), Gaps = 42/848 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+S RI V+L +M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+
Sbjct: 6 MSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 65
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GKFHPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYT
Sbjct: 66 KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 125
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ ML DI++DTV+F N+D ++KEP++LPAR P LL+NGASGIAVGMATNI
Sbjct: 126 EARMSKIAVEML-RDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMATNI 184
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
P HNLGE++ + L+ NP+AT ++L++ +PGPDFPTGG+++G GI AY TG+G I V
Sbjct: 185 PTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGTIIV 244
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K ++E ++K+ R +I+ EIPY NK+ L+E+IAEL K +DGI+D+ DE+DR GM
Sbjct: 245 RAKVDIE--ETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVI+++R A +++N+LY++T +Q++F+ NM+ I+ G PK + LKE+L +L+ + V
Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEEV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
V RR F+L + + R HIVEG+ + LD++D +I+I+R++ ++ A + L ++ LS++QA
Sbjct: 363 VRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYGLSDRQA 422
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RLT LER+K E K LME I +++L+ R+ I Q+I E+ E++ RF
Sbjct: 423 QAILDMRLVRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYDELKEIQRRFGD 482
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + L+ D L+D D+I ++++ ++ GY+KR+ + F QNRG G +
Sbjct: 483 ARRTELQVGDITNLEDEDLIEQQDIVVTLTHNGYIKRLPVDEFKSQNRGGRGVKGMGVHS 542
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + I HD +L+F++ G V+S + Y+IPE R+A G P++ +L + E+I ++
Sbjct: 543 DDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEIPEYGRSAQGIPIINLLGIDAKEKINAV 602
Query: 680 IPVSEFA---GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
I VS A D+ L +T G +K+ ++ F +IR+ G+ AI L GDEL V +D
Sbjct: 603 INVSNTAEEDADRDLFFVTKQGVVKRTAVEEFKNIRSNGLKAINLHDGDELIAVEIIDHD 662
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + + G + S +RS+ R G +RL++GD + I L+ D
Sbjct: 663 QNMIIGTHEGYAVSFSASAVRSMGRAAAGVRGVRLREGDFV----IGAGQLNPD------ 712
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVF 852
+L +SE G GK+ P + + P+ G G K LA +
Sbjct: 713 -----------SRVLVISEKGFGKQTPAAEY---PIKGRGGKGIKTVNVTEKNGPLAGLT 758
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
V + DE ++LV+ G + R V +S R GV L++L K+ + + +
Sbjct: 759 TV--------DGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRV 810
Query: 913 SVTEPETD 920
+ E D
Sbjct: 811 AKEEAADD 818
>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
102761]
Length = 873
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/876 (42%), Positives = 548/876 (62%), Gaps = 68/876 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+++DTV++VPN+D ++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N E T+ +L+EY+PGPDFPT +I G GI+DAY+TGRG+I
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEA--DKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F++ R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 360 VVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+EF L+E+QA AILD+ L +LT LE +K +DE KT
Sbjct: 420 AAMLERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKT 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I +L +LSS + ++++I +E+ +K +F+ R + + A + +D D+I +++
Sbjct: 480 LLEEIAELLHILSSAERLMEVIREELELVKEQFNDARRTEITAA-THDIDLEDLINQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GK+ +++ D + +V HD +L FS RG +
Sbjct: 539 VVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRM 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V IL L + ERIT+I+PV E+ D+F+ M T +G +KK
Sbjct: 599 YWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L D L V ++ + + S+ G V+ + +R++ R
Sbjct: 659 LTDFSRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L + D + S+ I+P H D + +L V+E+G+GKR L
Sbjct: 719 GVRGIKLAESDNVVSL-IVP---HNDGD-----------------VLTVTENGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G++ K S + VVG +G ++ ++++ GT+ R +V +
Sbjct: 758 EEYPAKSRATQGVVSIKVSERNG----SVVGAVQVLEG---DEFMMITNGGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+S R +GV L+R K+ L + EP+ D
Sbjct: 811 VSRVGRNTQGVTLIRTTEDEKV--VGLQRIDEPDED 844
>gi|379718021|ref|YP_005310152.1| protein GyrA [Paenibacillus mucilaginosus 3016]
gi|378566693|gb|AFC27003.1| GyrA [Paenibacillus mucilaginosus 3016]
Length = 835
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/838 (41%), Positives = 538/838 (64%), Gaps = 33/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ +++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRILFAM ELG+S KP+KK
Sbjct: 8 QVKEIDIGSEMRTSFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI+++T++FVPN+D ++EP++LP+R P LL+NG SGIAVGMATNIPPH
Sbjct: 128 LSKIA-MELLRDINKETIDFVPNYDGEEQEPAVLPSRFPNLLVNGLSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + LI NPE T EL++ + GPDFPTGG IMG GI AY TGRG + +R K
Sbjct: 187 NLTEVINGVQQLIQNPEVTPLELMQSIKGPDFPTGGYIMGREGIKQAYATGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T L++ + +I+ E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDR+GMRIV
Sbjct: 247 T---LIEENGNKARIIVYELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+LY+ TA+QS+F M+ +++G+PK + L++VL +L+ + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLYKQTAMQSNFGIIMLALVNGEPKVLNLRDVLFHYLEHQKVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L F LS QA AI
Sbjct: 364 RTEFELRKAEARAHILEGLRIALDHLDEVIALIRASRTTEEAREGLMTRFGLSFDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I + + +L+ + +L +I +E+ E+K +F R
Sbjct: 424 LDMRLQRLTGLERQKIEEEYAELLKKIAEYKAILADEQLVLAIISEELNEIKEKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + + ++D D+IP ++++ I+ GY+KR+ T+ Q RG G + D
Sbjct: 484 SEITIGEE-SIEDEDLIPQSDVVITITHTGYIKRLPVTTYRSQRRGGKGIMGMDTKDKDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H ++L+F+++G VY +AY+IP+ +R A GTP++ ++ + GE I ++IPV
Sbjct: 543 VEHLFVTNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F D++L + G +KK SL+ +S+IR G+IAI L D+L VR + + M
Sbjct: 603 ESFDSDKYLFFASKKGLVKKTSLDDYSNIRKGGLIAITLREDDDLIGVRLTDGNQSIIMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I + +R + R+ G ++L + D + MD++ H+D
Sbjct: 663 TAQGMSIHFPENEVRPMGRSATGVKGIQLDEEDHVIDMDVV----HED------------ 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G GKR P+S +R G+ ++++ VVG + ++
Sbjct: 707 -----NSVLIVTSKGFGKRTPVSEYRLQSRGGKGIKTLNVTSKNGP----VVGLKVVQE- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+E +++++ GTV R + IS+ R +GV L+ + ++ + + + ++ D
Sbjct: 757 --EEDLMIITAFGTVIRTSMSGISLMGRNTQGVRLINIREEDEVSTLARVEKSDDPAD 812
>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
Length = 895
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/858 (41%), Positives = 550/858 (64%), Gaps = 72/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ GSY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LL D+D+DTV+FVPN+D +++ P++LP ++P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMSKIA-GELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+VD A I+N + T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + +E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRSRANIEM--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQP+ +K++L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I +++ AP+ + A L
Sbjct: 360 VVTRRTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNV 419
Query: 489 -----------------KDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+D++ L+E QA AIL++ L RLT LE +K +DE K
Sbjct: 420 ASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDID---IIPN 581
L+E+I +L +L+S + ++++I +E+ +++ + R + + + + DID +I
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEI----TAAVHDIDMEELIAQ 535
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S GYVK + + Q RG GKS K++ D + +V HD++L FS R
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G Y + Y++P+ +R A G P+V IL L +GERIT+I+PVSEF+ ++F+ M T +G +K
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL+ F+++R G+IA+ L D L V + + + S++G V+ + D +R + R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G M+L + D++ S+ I+P S+ +L V+++G+GKR
Sbjct: 716 TASGVRGMKLPEDDQVVSL-IVP--------------------SNEGDILTVTQNGYGKR 754
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L+ + G++ K S DR VVG E+G +++++++ +GT+ R +
Sbjct: 755 TELAEYPTKGRATQGVVSIKVS--DRNGP--VVGAVQVEEG---DEMMMITDAGTLVRTR 807
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GV L+R
Sbjct: 808 VAEVSQVGRNTQGVTLIR 825
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 17/206 (8%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
N++ + + G VK+ + F N++ G I + LR +D++ + + ++ FS
Sbjct: 641 NEKFIFMATGDGTVKKTSLDQFANVRANGLIAVN---LRDDDSLIGVDITDGNSDIMLFS 697
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLVMLTMNG 698
G V K+ R A+G V+ + L + +++ S I+P +E GD ++ +T NG
Sbjct: 698 KSGKVVRFNEDKVRPMGRTASG---VRGMKLPEDDQVVSLIVPSNE--GD--ILTVTQNG 750
Query: 699 YIKKVSLNLFSSI--RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCD 754
Y K+ L + + T G+++I++ G + V+ D+++ M + G ++ +
Sbjct: 751 YGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMM-MITDAGTLVRTRVA 809
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + RNT+G +R + + + +
Sbjct: 810 EVSQVGRNTQGVTLIRTAEDENVVGL 835
>gi|335048106|ref|ZP_08541126.1| DNA gyrase, A subunit [Parvimonas sp. oral taxon 110 str. F0139]
gi|333757906|gb|EGL35464.1| DNA gyrase, A subunit [Parvimonas sp. oral taxon 110 str. F0139]
Length = 809
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/814 (42%), Positives = 539/814 (66%), Gaps = 35/814 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IV V++ +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRI++AM LGL KP+KK +
Sbjct: 10 IVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKSS 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD+A+YD+ VR+AQDF+LRYPL+ G GNFG+ID D AAA RYTE R+
Sbjct: 70 RLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+ M L DI++DTV+F PN+DE++KEP +LP++ P LL+NGA+GIAVGMATN+PPHN
Sbjct: 130 QKLALEM-LRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D C I N + ++ EL++++ GPDFPTG IMG GI AY TGRG+ITVR
Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGAYIMGLEGIKQAYHTGRGKITVRAVA 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E ++K++ +I+ EIPYQ NK+ L+ KI EL+++K ++GISD+RDES+ G+RIVI
Sbjct: 249 NIEEHNNKTR---IIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+P+I++N+LY+ T +Q++F + +++G+PK + LKE++ +++ + V+ RR
Sbjct: 306 ELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLTLKELIGHYVEHQREVITRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF+L + ++R HIVEG++ +D++D +I+I+R S S A L + F ++ QA++IL
Sbjct: 366 CRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIR--ASYSDAQEKLMERFGFTKIQAESIL 423
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M LRRL LER+K DE +L+++I +L+E+L + + IL +I++E+IE+K +F R +
Sbjct: 424 EMRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGDDRRT 483
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ + I D +++ ++++GY+KR+ +T+ +QNRG G ++ +D +
Sbjct: 484 EIKPNFDEIEIEELIKEED-VVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTIKEDDYV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V H +L+F+++G VY +AY+IPE R A G ++ +L L GE++ ++IPV
Sbjct: 543 DSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVNAVIPVK 602
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+ D++L+M T G IK+ S+ LF SIR G+ AI LV DEL VR +D + +
Sbjct: 603 DAEADEYLIMATKKGTIKRTSVELFKSIRKVGMKAINLVDDDELIQVRVSPVEDSAILVT 662
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G+ I + +R + R +G ++L D++ SM++
Sbjct: 663 KKGLAIKFALSDLREIGRTGQGVRGIKLDKDDEVVSMNL--------------------- 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
S G LL SE G+GKR S+++ G+ YK + + FVV +
Sbjct: 702 DSEGKHLLVFSEYGYGKRTLASNYKVQNRGGKGVKTYKVTEK----TGFVVSSKMV---N 754
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
+++V+++SQSG + R+ V+DI ++ R +GVI+
Sbjct: 755 PNDEVIVLSQSGGIIRLLVKDIPVKGRDTQGVII 788
>gi|328543836|ref|YP_004303945.1| DNA gyrase subunit A [Polymorphum gilvum SL003B-26A1]
gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
Length = 912
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/906 (42%), Positives = 540/906 (59%), Gaps = 83/906 (9%)
Query: 77 GPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSR 136
G + I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++MHE G
Sbjct: 10 GGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWN 69
Query: 137 KPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAM 196
KP++K ARVVG+V+GK+HPHGD+A+YD+LVRMAQ+FSLR PLI G GNFGS+D DPAAAM
Sbjct: 70 KPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAM 129
Query: 197 RYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMA 256
RYTECRL+ ++ LL DID+DTV+F N+D S+ EP +LPA+ P LL+NGA GIAVGMA
Sbjct: 130 RYTECRLQKVAHK-LLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGAGGIAVGMA 188
Query: 257 TNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGR 316
TNIPPHNLGE++D A++ NP TL ELLE +PGPDFPTGG+I+G GI AY TGRG
Sbjct: 189 TNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRSAYETGRGS 248
Query: 317 ITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR 376
+ +RGK EVE + ++ R +I+ EIPYQ NK+ ++EKIAELV K ++GISDIRDESDR
Sbjct: 249 VVMRGKVEVEEI--RAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDIRDESDR 306
Query: 377 SGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFR 436
GMR+VIELK+ A +++N LYR +ALQ+SF CNMV + G+P+QM L ++L+AF+ FR
Sbjct: 307 LGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLKAFIAFR 366
Query: 437 CSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE----- 491
V+ RR RF L++ ++R H++ G+ + + N+D VI ++R AP +TA A L
Sbjct: 367 EEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQRNWPAM 426
Query: 492 ---------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
++LSE+QA AILD+ L+RLT L R + DE L E+I
Sbjct: 427 DVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNKLGEEIA 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
E+L SR I Q+I +E++E++N F+TPR + + + L+D D+I ++M++ +S
Sbjct: 487 DYLEILRSRPRIQQIIREELLEIRNEFATPRKTEIVEG-GADLEDEDLIQREDMVVTVSH 545
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+KR+ T+ Q RG G+S + D ++ V H VL+FS RGIVY + +
Sbjct: 546 TGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKMKVW 605
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNL 707
++P + G LV +L L GE+I+SI+P+ E D ++ T G +++ L+
Sbjct: 606 RLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRRNKLSD 665
Query: 708 FSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGS 766
F+ + G IA++L GD + V CT +D V + + G I +R + RN+ G
Sbjct: 666 FTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGRNSVGV 725
Query: 767 VAMRLKDGDKMASMDII------------------------------------PAALHKD 790
+ L + D + SM I+ A H
Sbjct: 726 RGINLAEDDHLISMSILRHFEADAEERVTYLKRRRLMRGETEDAGVEDEAEEAGAEGHLS 785
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
LER E S ++ +L VSE+G+GKR SSF R G G A R
Sbjct: 786 LERYAEMS------AAEQIILTVSENGYGKRT--SSFEYRVTGRGGK-GITAMAVTRRNG 836
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
V F + E +Q++LV+ G + R V I + R +GVI+ K+ +
Sbjct: 837 PLVAAFPV----EDSDQIMLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVE 892
Query: 911 LISVTE 916
+S E
Sbjct: 893 RVSEDE 898
>gi|386720576|ref|YP_006186901.1| DNA gyrase subunit A [Paenibacillus mucilaginosus K02]
gi|384087700|gb|AFH59136.1| DNA gyrase subunit A [Paenibacillus mucilaginosus K02]
Length = 835
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/838 (41%), Positives = 538/838 (64%), Gaps = 33/838 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++ +++ EM S++ Y+MS+++ RALPDVRDGLKPVHRRILFAM ELG+S KP+KK
Sbjct: 8 QVKEIDIGSEMRTSFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMSPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFSLRY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ LL DI+++T++FVPN+D ++EP++LP+R P LL+NG SGIAVGMATNIPPH
Sbjct: 128 LSKIA-MELLRDINKETIDFVPNYDGEEQEPAVLPSRFPNLLVNGLSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + LI NPE T EL++ + GPDFPTGG IMG GI AY TGRG + +R K
Sbjct: 187 NLTEVINGVQQLIQNPEVTPLELMQSIKGPDFPTGGYIMGREGIKQAYATGRGSVIMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T L++ + +I+ E+PYQ NK+ L+EKIAELV K +DGI+D+RDESDR+GMRIV
Sbjct: 247 T---LIEENGNKARIIVYELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P++V+N+LY+ TA+QS+F M+ +++G+PK + L++VL +L+ + V+ R
Sbjct: 304 IELRRDVNPNVVLNNLYKQTAMQSNFGIIMLALVNGEPKVLNLRDVLFHYLEHQKVVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L F LS QA AI
Sbjct: 364 RTEFELRKAEARAHILEGLRIALDHLDEVIALIRASRTTEEAREGLMTRFGLSFDQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L+++I + + +L+ + +L +I +E+ E+K +F R
Sbjct: 424 LDMRLQRLTGLERQKIEEEYAELLKKIAEYKAILADEQLVLAIISEELNEIKEKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + + ++D D+IP ++++ I+ GY+KR+ T+ Q RG G + D
Sbjct: 484 SEITIGEE-SIEDEDLIPQSDVVITITHTGYIKRLPVTTYRSQRRGGKGIMGMDTKDKDF 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ V H ++L+F+++G VY +AY+IP+ +R A GTP++ ++ + GE I ++IPV
Sbjct: 543 VEHLFVTNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F D++L + G +KK SL+ +S+IR G+IAI L D+L VR + + M
Sbjct: 603 ESFDSDKYLFFASKKGLVKKTSLDDYSNIRKGGLIAITLREDDDLIGVRLTDGNQSIIMG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ GM I + +R + R+ G ++L + D + MD++ H+D
Sbjct: 663 TAQGMSIHFPENEVRPMGRSATGVKGIQLDEEDHVIDMDVV----HED------------ 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+ G GKR P+S +R G+ ++++ VVG + ++
Sbjct: 707 -----NSVLIVTSKGFGKRTPVSEYRLQSRGGKGIKTLNVTSKNGP----VVGLKVVQE- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+E +++++ GTV R + IS+ R +GV L+ + ++ + + + ++ D
Sbjct: 757 --EEDLMIITAFGTVIRTSMSGISLMGRNTQGVRLINIREEDEVSTLARVEKSDDPAD 812
>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
Length = 883
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/856 (41%), Positives = 540/856 (63%), Gaps = 66/856 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 9 DIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 68
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGS+D D AAAMRY
Sbjct: 69 YKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 128
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D ++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 129 TEVRMAKIAHE-LLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATN 187
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A + N + T++EL+EY+ GPDFPT +I G GILDAYRTGRG+I
Sbjct: 188 IPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIY 247
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + ++E D K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 248 IRAQADIE-TDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDG 306
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+KR A +V+N L+ T +Q SF NMV + GQPK + LKE++ AF+ R
Sbjct: 307 MRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRRE 366
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + V L N+D VI ++R+AP+ + A AAL
Sbjct: 367 VVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSV 426
Query: 489 -------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++ L+E+QA AILD+ L++LT LE +K +DE +
Sbjct: 427 SAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYR 486
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
L+ QI +L +L S + ++ +I +E+ +K +++ PR + + + ++ ++ D+I +
Sbjct: 487 ELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITE-NTADINIEDLINEEN 545
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG
Sbjct: 546 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGR 605
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
+Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ +F+ M T +G +KK
Sbjct: 606 LYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGKFVFMATASGTVKKT 665
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
L FS R+ GIIA+ L GDEL V + + S +G V+ + + +R + R
Sbjct: 666 PLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTA 725
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
G M+L D DK+ S+ IIP +G +L V+E+G+GKR
Sbjct: 726 TGVRGMKLVDDDKVVSL-IIP------------------RGEGD--ILTVTENGYGKRTV 764
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
S + G+I K S + VVG A E +Q+++++ +GT+ R +V
Sbjct: 765 QSEYPTKNRATQGVISIKVSERNGK----VVG---AIQVEETDQIMMITNAGTLVRTRVS 817
Query: 884 DISIQARYARGVILMR 899
++SI R +GV L+R
Sbjct: 818 EVSIVGRNTQGVTLIR 833
>gi|389840221|ref|YP_006342305.1| DNA gyrase subunit A [Cronobacter sakazakii ES15]
gi|429121181|ref|ZP_19181824.1| DNA gyrase subunit A [Cronobacter sakazakii 680]
gi|387850697|gb|AFJ98794.1| DNA gyrase subunit A [Cronobacter sakazakii ES15]
gi|426324337|emb|CCK12561.1| DNA gyrase subunit A [Cronobacter sakazakii 680]
Length = 878
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/887 (42%), Positives = 546/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD+D++TV+FV N+D ++K P ++P ++P LL+NGASGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ S A A L
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEIT-ANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS RT GIIA+ L GDEL V D V + S G V+ D +R + R
Sbjct: 660 LTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GD + S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDSVVSL-IVP------------------RGEGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + DR VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATKGVISIKVT--DRNGP--VVGAVQVDDA---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L S +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDSIDGSVA 856
>gi|417791736|ref|ZP_12439166.1| DNA gyrase subunit A [Cronobacter sakazakii E899]
gi|449307509|ref|YP_007439865.1| DNA gyrase subunit A [Cronobacter sakazakii SP291]
gi|333954167|gb|EGL72039.1| DNA gyrase subunit A [Cronobacter sakazakii E899]
gi|449097542|gb|AGE85576.1| DNA gyrase subunit A [Cronobacter sakazakii SP291]
Length = 878
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/887 (42%), Positives = 546/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD+D++TV+FV N+D ++K P ++P ++P LL+NGASGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ S A A L
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEIT-ANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS RT GIIA+ L GDEL V D V + S G V+ D +R + R
Sbjct: 660 LTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GD + S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDSVVSL-IVP------------------RGEGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + DR VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATKGVISIKVT--DRNGP--VVGAVQVDDA---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L S +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDSIDGSVA 856
>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
Length = 878
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/887 (42%), Positives = 546/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD+D++TV+FV N+D ++K P ++P ++P LL+NGASGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ S A A L
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEIT-ANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS RT GIIA+ L GDEL V D V + S G V+ D +R + R
Sbjct: 660 LTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GD + S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDSVVSL-IVP------------------RGEGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + DR VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATKGVISIKVT--DRNGP--VVGAVQVDDA---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L S +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDSIDGSVA 856
>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
Length = 852
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/831 (42%), Positives = 525/831 (63%), Gaps = 35/831 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I V + E+MTG+Y+ YSMSV++ RALPDVRDGLKPVHRRIL+AM ++GL S + ++KCA
Sbjct: 6 IKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKCA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VGEVL +HPHGD +VY++LVRMAQ +S+RYPL+ G GNFGS D DP AAMRYTE ++
Sbjct: 66 GTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAKM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A+++ LL DID+DTV+FVPN+D KEP + PARLP LLLNG +GIAVGMATNIPPHN
Sbjct: 126 AAIADE-LLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ D + LI NPEAT ++L + GPDFPTGGLI G GI + Y GRGRI +R +T
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRART 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +++ R +I E+PYQ NK+ LV+KIAEL +K ++GIS++RDESDR GMR+V+
Sbjct: 245 HIE--ENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVV 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A+P ++NSL++ TA+QSSF+ NM+ ++D QP+ + LK+ LQ ++ R V+ RR
Sbjct: 303 ELKRDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA-LKDEFKLSEKQADAI 502
+F+L + + R+HI+EG+ + +DNLD VI I+R + + A L+ F S +QA A+
Sbjct: 363 TQFELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFGFSNEQARAV 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L L L+R+K DE + +++ I +LLS I +I ++ ELK +F R
Sbjct: 423 LDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDINEIRGIIMADLKELKEKFGDARR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E+ + D D+IPN+E+++ ++EKGY+KR+ T+ Q RG G + R +D
Sbjct: 483 TEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPSGTYRAQRRGGRGVTGMATREDDT 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ +V HD +L+F+DRG V+ R Y++P+ +R A G L+ ++S+ ER+T+I+ V
Sbjct: 543 VRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTARGEHLINLISIEQRERVTAIVYV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ FLV+ T G +KK +++ F +R +G+IA+ L DEL + + V +
Sbjct: 603 PKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDELIGAKLVGPEADVLLI 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD-IIPAALHKDLERTPEDSHSN 801
+ +G I D +RS SR + G +RL D D + S++ +IP
Sbjct: 663 TLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTVVSLNAVIP----------------- 705
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
G LL V+E G+GKR P+ + G++ K + + ++A+ +V
Sbjct: 706 -----GGELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMV------ 754
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
E D ++L+S SG V R V + R +GV LM L K+ + ++
Sbjct: 755 -TEEDNDLMLISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAVAV 804
>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
Length = 811
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/820 (43%), Positives = 532/820 (64%), Gaps = 45/820 (5%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + EM SY+ Y+MSV+ GRALPDVRDGLKPVHRRIL+AMH+LG++ K KK AR+V
Sbjct: 12 VNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNKSHKKSARIV 71
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEVLGK+HPHGD AVYD++VRMAQ+FS RY L+ GHGNFGS+D D AAAMRYTE R+ L
Sbjct: 72 GEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKL 131
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S LL+DI++DTV+F PNFD++ KEP +LP+RLP LL+NG+SGIAVGM+TNIPPHNL E
Sbjct: 132 S-TELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTNIPPHNLTE 190
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D L A+I NP+ + EL++ + GPDFPTGGLIMG GI A+ TG+G++ VR KTE+E
Sbjct: 191 VIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKVKVRAKTEIE 250
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ +R +I+ E+PYQ NK+ LVEK A LV + ++GI+D+RDESDR+GMRI I+L+
Sbjct: 251 EFGNNRER--IIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGMRISIDLR 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A+P IV+N L++ T LQ +F M+ ++DG+P+ + LKEVLQ +L+ + VV RR ++
Sbjct: 309 KSANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEVVTRRTKY 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + + R HI+EG+ +N+D V++ +R + S + A L +F L++KQA AIL M
Sbjct: 369 NLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLISDFDLTKKQAKAILRMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LE +K E + L+E+I L+ +L+S + +L +I+ E++ LK ++ R + +
Sbjct: 429 LQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEKLLDIIKDEILVLKEKYKDERRTKIV 488
Query: 567 DADSGQLDDIDIIPND-----EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
D +ID+ D E+L+ I++ Y+KR+ +T+ Q+RG G D
Sbjct: 489 DQ------EIDLAVEDLIEEEEILITITDNNYIKRIPLDTYRSQHRGGRGIIGINPDAKD 542
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
++ HD++L+F+++G Y + Y+IP+ +R A GT ++ +L + ER+T++IP
Sbjct: 543 SVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGTAIINLLDMEPNERVTAVIP 602
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
V +F D +L+M+T G +K+ L F++ TG+IA+ L DEL VR T + + +
Sbjct: 603 VEDFDLDDYLLMVTEQGIVKRTELQEFNT-NYTGLIALDLQQNDELIEVRLTTGQEDIIL 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ G+ I + +RS+ R RG + L DK+ DII
Sbjct: 662 GTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKVVGADII------------------ 703
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
G LL V++ G+GK+ PL+ +R+ GL+ K + ++ +L A+ VV
Sbjct: 704 ---KDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTALKVV------ 754
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E D++V+L+S+ G V R+ V +IS +R +GV LM L
Sbjct: 755 --EEDDEVMLISKEGIVIRMSVSEISSTSRNTQGVNLMSL 792
>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
Length = 844
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/839 (41%), Positives = 533/839 (63%), Gaps = 34/839 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R V++ EM S+I+Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ KPF+
Sbjct: 5 TARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVGEV+ +HPHGD+++Y+++VRMAQDF++RY L+ G GNFGS+D DPAAAMRYTE
Sbjct: 65 KSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R L+ LL DID++TV+F+PN+D ++EP +LP+R P LLLNGASGIAVGMATNIP
Sbjct: 125 SRFSKLA-LELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+VD + A+I NP+ T+Q+L++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT++E D K K +I+ EIPYQ NK+ LVEKIAELV K ++GI+D+RDESDR GMR
Sbjct: 244 AKTQIEE-DGKGKPR-IIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R P +V+N+L++ T +QS+F NM+ ++D +P+ + L+++L +L+ + ++
Sbjct: 302 IVMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVII 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L Q + R HI+EG+ + LD++D +I ++R + + A L + + LS +QA
Sbjct: 362 RRRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + LM +I +L +L+ I +I E+ E+K +F
Sbjct: 422 AILDMRLQRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEKFGDE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D ++D D+IP +++++ ++ GY+KR+ +T+ Q RG G + +
Sbjct: 482 RRTEI-TFDENHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTKDD 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD++++F+ +G VY + ++IP+ +R A GTP++ ++ + GER++++I
Sbjct: 541 DFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVSAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF + +L T G IKK +L + +IR G+IA+ L DEL VR +
Sbjct: 601 PVKEFDQEHYLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQQQII 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M + GM + + +R++ RN G + L +D
Sbjct: 661 MGTHKGMSVRFNEGDVRTMGRNATGVKGITLD---------------------DDDDVID 699
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
+L V+ +G+GKR P+ +R + G G K + DR VVG +
Sbjct: 700 MDVIKPNAEVLIVTANGYGKRTPVDEYR---IQSRGGKGIKTHNVTDRSGP--VVGLKVV 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E +E +++++ SG + R +++ IS+ RY +GV L+RL + ++ S + TE E
Sbjct: 755 ---EPEEDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVAKCPPTEEE 810
>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
Length = 815
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/844 (44%), Positives = 537/844 (63%), Gaps = 45/844 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IV L +M SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E G+ K +KK
Sbjct: 7 KIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVYDS VRMAQDFS+RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 67 ARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYTEMR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DID+DTV+F+PN+D S EP +LP+R+P LL+NG+ GIAVGMATN+PPH
Sbjct: 127 MAKITLEML-RDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+V+ LCA+I NPE T+ EL++Y+ GPDFPT +I G+ GI D YRTGRG ITVR +
Sbjct: 186 NLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E ++ R +I+ E+PYQ NK+ LVE IA+L K +DGI+ +RDESDRSGMRIV
Sbjct: 246 VDIEEMERGKNR--IIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+ +P I++N+LY+ T +Q +F M+ ++DG P+ + LK++L +L + V+ R
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R+R++L + + + HI+EG+++ LD++D VIR +RE+ ++ A AL +F LSEKQA AI
Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISKFGLSEKQAVAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER K + K + E I L +LLSSR+ I+ +++ E+ + KN F R
Sbjct: 424 LDMRLRRLTGLERDKIEADYKDVQETIAYLRDLLSSREKIMGVVKAELTDEKNNFGDKRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A G +D D+IP+ M + ++++ Y+KR+ + Q +G G S K++ D
Sbjct: 484 TEIA-AALGDMDVTDLIPDKPMTITLTKQNYIKRIDSSDLRTQKKGGRGVSGLKMKDGDY 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQ-ILSLSDGERITSI-- 679
+ + HD +L+F+++G VY AY IPE +R A G+ ++ I SL E +T +
Sbjct: 543 VRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARGSAMINFITSLGADEHVTELLD 602
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ +SE G ++L+M+T GYIKK +L + +I G+IA++L D L V ++ +
Sbjct: 603 LDISE-EGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDRLVAVLPVKGNEEI 661
Query: 740 AMASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
M ++ GM I S D +R LSR+ G MRLK + + + A KD
Sbjct: 662 IMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRLK---EGDDVVGVVVAAEKD------- 711
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+ +S G+ KR S++R N G I +K E VV
Sbjct: 712 ------------IFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYE-------VVALV 752
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDI-SIQARYARGVILMRLELSGKIQSASLISVTE 916
A+D +++V +S+ G RI I S +A+ +GVIL RLE +I AS+ V+E
Sbjct: 753 AADD---RDELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDRI--ASIDVVSE 807
Query: 917 PETD 920
PE D
Sbjct: 808 PEED 811
>gi|386828262|ref|ZP_10115369.1| DNA gyrase, A subunit [Beggiatoa alba B18LD]
gi|386429146|gb|EIJ42974.1| DNA gyrase, A subunit [Beggiatoa alba B18LD]
Length = 868
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/854 (42%), Positives = 533/854 (62%), Gaps = 65/854 (7%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ ++P+ + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR LFAMHELG KP+K
Sbjct: 5 AKEVLPINIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRALFAMHELGTDWNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVYD++VRMAQDFSLRY L+ G GNFGSID D AAMRYTE
Sbjct: 65 KSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYLLVDGQGNFGSIDGDAPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLADI+++TV+F PN+D S++EPS+ P R+P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADIEKETVDFTPNYDGSEQEPSVFPTRIPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++ ALI PE + L++++PGPDFPT +I G GI++AY TGRGRI VR
Sbjct: 184 PHNLREVIKACIALIDEPELDIHALMKFIPGPDFPTAAIINGASGIVEAYHTGRGRIYVR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K +E LD + + +++ E+PYQ NK+ L EKIAELV+ K +DGI+++RDESD+ G+R
Sbjct: 244 AKASIE-LDENNGKERIVVNELPYQVNKARLQEKIAELVKEKKIDGITEMRDESDKDGIR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+VIE++RG +V+N+LY+ T LQ+ F N+V ++DGQP+ + LK++L+ FL R VV
Sbjct: 303 LVIEVRRGESADVVLNNLYQQTQLQTVFGINIVALVDGQPRILNLKQLLELFLRHRREVV 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA---------------------- 478
RR F+L + +ER HI+EG+ V L+N+D +I +++ A
Sbjct: 363 TRRTLFELRKARERAHILEGLAVALNNIDEMINLIKTAKNPQEAREGLLARSWSAQLIKT 422
Query: 479 -----------PSNSTASAALKDE-FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
PS A L E ++LSE QA AIL++ L RLT LE+ K ++E K L+
Sbjct: 423 MMQGENAYAARPSQLPAELGLDGEYYRLSETQAQAILELRLHRLTGLEQDKILEEYKGLL 482
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
QI +L +L+S + ++Q+I +E+ + N + R + + D L+ D+IP++ +++
Sbjct: 483 NQIHELLVILNSGERLMQVIREELQAIVNEYGDERRTEIV-LDHRDLNIEDLIPDEPVVV 541
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK + + Q RG GK+ +++ D + + HD +L F+ G VY
Sbjct: 542 TLSHEGYVKSQALSLYQAQKRGGKGKAATQMKEEDFIDKLFIASTHDTILCFTSAGKVYW 601
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+ Y++P+ RNA G P+V +L L + ER+ +++PV EF ++++ M T++G +KK L
Sbjct: 602 LKVYELPQAGRNARGKPIVNLLPLEESERVNAVLPVREFTENRYIFMATVSGTVKKTPLT 661
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766
FS RT GIIA+ L GD+L V V + S +G + + D +RS+ R RG
Sbjct: 662 EFSRPRTNGIIALALDEGDQLVNVAITDGQQDVMLFSNHGKAVRFTEDAVRSVGRTARGV 721
Query: 767 VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826
+ L+ GDK+ S+ I A G +L +E+G+GKR P+
Sbjct: 722 RGILLEKGDKVISLIITEA---------------------GGTILTATENGYGKRTPIDD 760
Query: 827 FRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
+ G+I K S + L VVG +D ++ ++L+S GT+ R V IS
Sbjct: 761 YPTKGRGTKGVISIKTSERNGL----VVGAVQVQD---NDDLMLISNRGTLVRTPVAGIS 813
Query: 887 IQARYARGVILMRL 900
+ +R +GV L+RL
Sbjct: 814 VVSRNTQGVGLIRL 827
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + + V+ FS+ G + R A G V+ + L G+++ S+I
Sbjct: 680 DQLVNVAITDGQQDVMLFSNHGKAVRFTEDAVRSVGRTARG---VRGILLEKGDKVISLI 736
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDEL--KWVRCCTND 736
++E G ++ T NGY K+ ++ + + T G+I+I+ + L V+ ND
Sbjct: 737 -ITEAGGT--ILTATENGYGKRTPIDDYPTKGRGTKGVISIKTSERNGLVVGAVQVQDND 793
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
DL+ + S G ++ + I +SRNT+G +RL D + + ++ I
Sbjct: 794 DLM-LISNRGTLVRTPVAGISVVSRNTQGVGLIRLVDEELLVGVEKI 839
>gi|339006698|ref|ZP_08639273.1| DNA gyrase subunit A [Brevibacillus laterosporus LMG 15441]
gi|338775907|gb|EGP35435.1| DNA gyrase subunit A [Brevibacillus laterosporus LMG 15441]
Length = 848
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/854 (40%), Positives = 546/854 (63%), Gaps = 33/854 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R +++ +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ K F+
Sbjct: 5 TSRFPKIDISQEMRDSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKAFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVG+V+ K+HPHGD A+Y+++VR+AQDF++RY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSANVVGQVMAKYHPHGDTAIYETMVRLAQDFNMRYMLVEGQGNFGSVDGDRAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R ++ ML DID+DTV+F+PN+D ++EP++LP+R P LL+NG++GIAVGMATNIP
Sbjct: 125 SRFSKIALEML-RDIDKDTVDFIPNYDGHEEEPTVLPSRFPNLLVNGSAGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + A+I NPE T+ EL++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLREVIDGVSAMIDNPEITVAELMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT +E + K++ +I+ EIPYQ NK+ LVEKIAELV K +DGI+D+RDESDR GMR
Sbjct: 244 AKTNIEENNGKAR---IIVTEIPYQVNKARLVEKIAELVREKKIDGITDLRDESDRKGMR 300
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIEL+R P +V+N+L++ T +QS+F NM+ +++ +PK + L+E++ +L+ + +V
Sbjct: 301 IVIELRRDIVPKVVLNNLFKHTQMQSTFGVNMLALVNSRPKTLNLREMIYHYLEHQRVIV 360
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L Q + R HI+EG+ + LD++D +I ++R + A AL + F LS +QA
Sbjct: 361 RRRTEYELRQAEARAHILEGLRIALDHIDEIISLIRASRMAEEARNALIERFGLSHEQAQ 420
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K E + L+ +I +L+ +L+ I +I +E+ +K +F
Sbjct: 421 AILDMRLQRLTGLEREKIEAEYQELLIKIAELKSILADDNKIYSIIREEMNAIKEKFGDD 480
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+IP +E++++++ GYVKR+ T+ Q RG G + +
Sbjct: 481 RRTAITIGED-MIEDADLIPEEEVVISLTHSGYVKRLPVTTYRSQKRGGRGIQGIGTKDD 539
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD +L+F+ +G VY R ++IP+ +R A GTP++ ++ + GE ++++I
Sbjct: 540 DFVEHLCITNSHDTLLFFTSKGKVYRLRGFEIPDLSRTAKGTPIINLIQIEKGETVSAVI 599
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF DQF+ T G +KK L F +IR G+ A+ L DEL VR + +
Sbjct: 600 PVKEFREDQFIFFATKQGIVKKTDLKSFENIRRGGLFAVNLREDDELINVRLTDGNQQII 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M ++ GM + + +R++ R G + L D + MD+I D E
Sbjct: 660 MGTKQGMSVRFNEGDVRTMGRTATGVKGITLDSNDVVIGMDVI----RDDAE-------- 707
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+L V+ G+GKR P+S +R G+ + + + VVG +
Sbjct: 708 ---------VLIVTAKGYGKRTPVSEYRIQTRGGKGIKTHNVTER----SGQVVGLKVV- 753
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++DE +++V+ +G + R++++ IS+ RY +GV L+RL ++ S + + +E +++
Sbjct: 754 --QADEDLMIVTITGIIIRMEIKGISVMGRYTQGVKLIRLGDEEEVVSIATVEASEEDSE 811
Query: 921 LFLPSTSDKLATES 934
L + + +L T++
Sbjct: 812 NNLCTEAAELETDN 825
>gi|406917298|gb|EKD56126.1| hypothetical protein ACD_58C00295G0003, partial [uncultured
bacterium]
Length = 948
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/833 (43%), Positives = 540/833 (64%), Gaps = 46/833 (5%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM SY+ Y+MSV++ RALPDVRDGLKPVHRR+LF+MHELGL+SR ++K A VVG+VLG
Sbjct: 62 EMKESYLDYAMSVIVARALPDVRDGLKPVHRRVLFSMHELGLTSRAKYRKSATVVGDVLG 121
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+AVY+++VR+AQ FS+RYPL+ G GNFGSID D AAAMRYTE +L A++E ML
Sbjct: 122 KYHPHGDSAVYETMVRLAQHFSMRYPLVDGQGNFGSIDGDNAAAMRYTEAKLTAIAEEML 181
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
ADID++TV+F PNFD S++EP++LP+R+P LLLNG GIAVGMATNIPPHNLGEL D +
Sbjct: 182 -ADIDKNTVDFTPNFDGSREEPTVLPSRVPQLLLNGTLGIAVGMATNIPPHNLGELCDGI 240
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
LI NPEA + EL++++ PDFPTG I I AY TG+G++ +R +E
Sbjct: 241 RHLIDNPEAEVDELMQFIKAPDFPTGANIYNLDDIKQAYATGKGKVLMRAVANIE----- 295
Query: 332 SKRMG----VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS-GMRIVIELK 386
K+ G +I+ EIPYQ NKS L+ KIAELV+ K ++GISD+RDESDR G+RIVIELK
Sbjct: 296 EKKSGNGFRIIVSEIPYQVNKSDLISKIAELVKLKKIEGISDLRDESDRKEGVRIVIELK 355
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRAR 445
A P V+N LY LT++QS+F NM+ ++DG QP+ + LK VL+ F+ R VV RR
Sbjct: 356 SNAYPKKVLNLLYELTSMQSTFHINMLALVDGIQPRILTLKNVLEEFIKHRQVVVRRRTE 415
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L++ K+R HI+EG+ + LD++D +I +++++ + A L FKLS+KQA AIL+M
Sbjct: 416 FELARAKDRAHILEGLKIALDHIDEIIALIKKSETKEIAHKNLMKGFKLSDKQAAAILEM 475
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
L L LE +K DE K +E I +LE +L+S+ IL++I++E+ E +++++ R + +
Sbjct: 476 RLSALAGLEHQKIEDELKEKLELIKRLEAILASKDEILRIIKEELQETRDKYADERRTKI 535
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ G D+IPN+++++ +++ Y+KR+ T+ QNRG +G + + D +
Sbjct: 536 VAENIGSFRAEDLIPNEQVVITLTKTNYIKRVPIATYRSQNRGGVGVTGMATKEEDVVEH 595
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
+V + HD++++F+D+G +++A+ Y +P +R A G +V +L +S E++T+II S+
Sbjct: 596 LLVAKTHDNIMFFTDKGRLFAAKVYDLPAASRQAKGQNIVNVLQISPDEKVTTIITQSK- 654
Query: 686 AGDQ-----FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
DQ + M T G +KK + + ++R TG+IAI+L GDEL WV T D+ +
Sbjct: 655 --DQKLKAKYFFMGTKFGVVKKTLIEAYENVRKTGLIAIKLNDGDELNWVTMTTGDNSII 712
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M ++NG I +R + R+ G ++L+ GD++ +MD+IP ++L+
Sbjct: 713 MVTRNGQSIYFGEKDVRPMGRSAAGVRGIKLRPGDEVITMDVIP---QENLD-------- 761
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
+ V G GKR + +F K R G IG + S V +L
Sbjct: 762 ---------VFTVLGRGFGKRTMIKNFTK---QRRGGIGIRASKTSEKVGKVVE--ALVV 807
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
DG +D +VV+VS G + R+ ++ + R +GV LMRL+ K+ S ++ +
Sbjct: 808 DG-NDGEVVIVSTHGQMIRMALKSVKRLGRDTQGVTLMRLKPGDKVASMTVFN 859
>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
Length = 813
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/844 (41%), Positives = 532/844 (63%), Gaps = 38/844 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+ + RI+ E+ EM SY+TYSMSV++GRALPDVRDGLKPV RRIL+AM+E G ++ KP
Sbjct: 4 DFAQRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
F+K A+ VG+VL K+HPHGD AVYD++VRMAQDF LRYPL+ G GNFGSID DP AAMRY
Sbjct: 64 FRKSAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL L+ ML ADI+++TV+F N+D S+KEP++LP+R P LL+NG++GIAVGMATN
Sbjct: 124 TEARLSRLAHEML-ADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D + LI P+ +++EL + GPDFPTG LI+G+ GI AY+TG+G IT
Sbjct: 183 IPPHNLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSIT 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R +T++E L + R +++ E+PY NK+ L+E+IAEL ++ +DGI+D+RDESDRSG
Sbjct: 243 LRARTQIETLQNGRNR--IVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+RI IEL+R A+P +++N L++ TALQ +F M+ +++ +P+ + LK++L +L +
Sbjct: 301 LRIAIELRRDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + +R HI+EG++ LD +D VI +R +P+ A + L F +E Q
Sbjct: 361 VIVRRTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFGFTEVQ 420
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A ILDM LRRLT LER+K +E L ++I +L+S K +I+QE+ E+K ++
Sbjct: 421 AQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYG 480
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR + + D G +D D+I ++++++ IS GY+KR+ +T+ Q RG G +
Sbjct: 481 DPRRTRIT-PDDGDIDIEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQGAGTK 539
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + H +++F+D+G VY R ++IPE +R A GT +V ++ L GE++ +
Sbjct: 540 EEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPLLPGEKVNT 599
Query: 679 IIPVSEFAGDQ---FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+IPV E GDQ ++ T +G++KK ++ F ++R+TGIIAI+L GD L R
Sbjct: 600 VIPVKE--GDQEEGYIFFATRSGWVKKTAVTEFQNVRSTGIIAIKLEEGDTLVGARLTRG 657
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD-IIPAALHKDLERT 794
+D + + S G + D +R + R+TRG + L + + MD ++P
Sbjct: 658 NDEIILVSSAGYALRFHEDDVRPMGRDTRGVKGITLGPDEYVVGMDGVVP---------- 707
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
G LL VSE+G GKR PL+ + G+I + E V V
Sbjct: 708 ------------GADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLPERHGRLVGVK 755
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
+ D ++LVS+ G + RI V ++ R +GV LM L+ + ++ + + +
Sbjct: 756 AVTEGND------LMLVSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQVVT 809
Query: 915 TEPE 918
+ E
Sbjct: 810 RDEE 813
>gi|339448868|ref|ZP_08652424.1| DNA gyrase subunit A [Lactobacillus fructivorans KCTC 3543]
Length = 833
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/860 (42%), Positives = 547/860 (63%), Gaps = 38/860 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N R+ VEL ++M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ MHELG++ KP
Sbjct: 7 NKPSRVQNVELSKKMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYDMHELGVTPDKP 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+VLGKFHPHGD++VY+++VRMAQ+FS RY L+ GHGNFGS+D D AAAMRY
Sbjct: 67 YKKSARIVGDVLGKFHPHGDSSVYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL +S ML DI++DTV+F PN+D +++EP +LPAR+P LLLNGASGIAVGMATN
Sbjct: 127 TEVRLSKISMEML-RDINKDTVDFQPNYDGTEREPVVLPARIPNLLLNGASGIAVGMATN 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++ + L+ NP+AT +L+E +PGPDFPTGG++MG GI AY TGRG I
Sbjct: 186 IPPHNLSEVISAIHILMRNPDATTNDLMEALPGPDFPTGGVVMGKSGIRRAYETGRGSII 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K ++E + K+ + +I E+PY NK+ L+E+IA+LV +K ++GI+ I DESD+ G
Sbjct: 246 VRAKVDIE--EQKNGKQRIIATELPYMVNKAKLIERIADLVRDKRIEGITAINDESDKDG 303
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VI++KR A +++N+LY+LT +Q+SFS NM+ I+DG PK + LKE+LQ +L+++
Sbjct: 304 MRVVIDVKRDASAEVILNNLYKLTLMQTSFSFNMLAIVDGAPKVLSLKEILQYYLEYQVE 363
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F L + + R HI+EG++V LDN+D VI+I+R + + A L + F+L +KQ
Sbjct: 364 VITRRTKFDLRKAQARAHILEGLLVALDNIDAVIKIIRSSSTGDIAKNELINNFELDDKQ 423
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L RLT LER K DE L+ I +++L+SR I ++I E++E++ +F
Sbjct: 424 AQAILDMRLVRLTGLERGKITDEHNKLLANIKDYKDILNSRDRINEIIYDELLEIQKKFG 483
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + L + ++D D+I + +++ ++ GY+KR+ + F QNRG G+ V +
Sbjct: 484 DKRRTELLVGEITSIEDEDLIEEENVVITLTHNGYIKRLPTDEFKAQNRG--GRGVQGMG 541
Query: 619 VN--DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
VN D + + HD +L+F++ G VYS +AY++PE R A G P+V +L+L E+I
Sbjct: 542 VNKDDFIEHLLSTATHDRLLFFTNAGKVYSMKAYEVPEYGRAAKGIPIVNLLNLGQNEKI 601
Query: 677 TSIIPVSEFAGDQ--FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
++I +S DQ +L T G +K+ ++ F +IR G+ AI L GDE+ V
Sbjct: 602 QTVISISSKHNDQDKYLFFTTKLGTVKRTPVSDFLNIRKNGLKAIHLHDGDEVIGVSIVD 661
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
N D + + + G + D +RS+ R+ G +RL+ D + I+ T
Sbjct: 662 NGDNMIIGTHLGYAVSFKADDVRSMGRSASGVRGVRLRPEDYVVGAAIL----------T 711
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
P+ + +SE+G+GKR + + P+ G G K S + V
Sbjct: 712 PDSD-----------VFVISENGYGKRTKAADY---PIKGRGGKGIKTSNVTKKNGPL-V 756
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G S DE ++L++ G + R V ++S R GV L+R++ K+ + ++++
Sbjct: 757 GLSTV---TGDEDIMLITNMGVMIRFAVNNVSETGRATLGVHLIRVDDDAKVATMAVVAK 813
Query: 915 -TEPETDLFLPSTSDKLATE 933
E E+ + P+++ + E
Sbjct: 814 DQEQESKVEEPTSASDQSEE 833
>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 892
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/848 (41%), Positives = 542/848 (63%), Gaps = 34/848 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EP++LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLA-TELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAEL K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+LT LQ+SF NM+ +++G+PK + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A L+ FKLSE+QA A
Sbjct: 365 RRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +L +L+ + +L+L+ +E+ E++ RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S ++ Q++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RSEIQLGGLDQIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDESISTMIA 604
Query: 682 VSEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V++ D +LV T NG +K+ SL+ FS I G IAI DEL VR V
Sbjct: 605 VNDLEKEDAYLVFATKNGIVKRSSLSNFSHINRNGKIAINFRDEDELVAVRLTDGTKDVL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ + + EDS
Sbjct: 665 LGTSHASLIRFKESKLRPLGRTAAGVKGITLREGDELVGLAV-----------ATEDSED 713
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
V L V+E+G+GKR PL+ +R ++ G G K + V ++
Sbjct: 714 EV--------LVVTENGYGKRTPLNEYR---ISNRGGKGIKTATITEKNGDIVCITTVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
GE D +++V+ G + RI V DIS R A+GV L+RL G+ Q S ++ + + +
Sbjct: 762 -GEED--IMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRL---GEEQFVSTVAKVQEDLE 815
Query: 921 LFLPSTSD 928
L TSD
Sbjct: 816 DELEGTSD 823
>gi|392956559|ref|ZP_10322086.1| DNA gyrase subunit A [Bacillus macauensis ZFHKF-1]
gi|391877541|gb|EIT86134.1| DNA gyrase subunit A [Bacillus macauensis ZFHKF-1]
Length = 834
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 542/841 (64%), Gaps = 35/841 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
PR+ V + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG+++ K +K
Sbjct: 6 QPRVKEVNISSEMRKSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITADKAYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVY+++VRMAQDF+ R+ L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRHMLVDGHGNFGSVDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ M+ DI++DT+++ N+D S++EP+++PAR P LL+NG SGIAVGMATNIP
Sbjct: 126 ARMSKIAMEMV-RDINKDTIDYKANYDGSEQEPAVMPARFPNLLVNGTSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH+LGE++D + AL NP+ T+ EL+EY+PGPDFPT G I+G GI AY+TG+G I +R
Sbjct: 185 PHHLGEVIDGILALSTNPDITIPELMEYIPGPDFPTAGEILGREGIRKAYQTGKGSIVIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + + K M +++ E+PYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMR
Sbjct: 245 AKAEIEEM-ANGKNM-ILVTELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+P++++N+LY+ TALQ+SF NM+ ++DGQPK + LKE L +L + V+
Sbjct: 303 IVIEVRRDANPNVLLNNLYKQTALQTSFGINMLALVDGQPKVLNLKECLYYYLKHQQVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F L + + R HI+EG+ + LD+LD+VI ++R + + A L +F+LS +QA
Sbjct: 363 RRRTEFDLRKAEARAHILEGLRIALDHLDQVIALIRASQTTDIAREGLMTQFELSYEQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL+M L+RLT LER K E L+ I +L+ +L+ + IL++I +E+ E+K RF+
Sbjct: 423 AILEMRLQRLTGLERDKIEKEYSELVAFIDELKAILADEEKILEIIREELNEIKERFADD 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + ++D D+IP +++ ++ KGY+KR+ +T+ Q RG G +
Sbjct: 483 RRTNIT-VGFDMIEDEDLIPRTNIVITLTNKGYIKRLPISTYRSQRRGGRGVQGMGTSED 541
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + +H+ +L+F+++G VY + Y+IPE +R A G P+V +L + GE I+++I
Sbjct: 542 DFVEHLFTTVSHNTILFFTNKGKVYRLKGYEIPEMSRTAKGIPIVNMLQVERGETISAVI 601
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV +F D +L +T +G K+ L+ F++IR G+ AI L DEL V+ + +
Sbjct: 602 PVEDFNDDWYLNFMTKHGITKRSPLSQFANIRKGGLFAITLRDEDELMGVKLTNGEKDII 661
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + NGM I +RS+ R G A+ L + D + M++ L+ T E
Sbjct: 662 VGTNNGMAIRYRESDVRSMGRTAAGVKAITLGENDCVIGMEV--------LDETQE---- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAEDRLAAVFVVGFSLA 859
+L V++ G GKR P+ +R L G G K + DR + + A
Sbjct: 710 ---------VLIVTDKGFGKRTPMEDYR---LQSRGGKGIKTCNITDRNGQIIALKTVTA 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++++ G + R+ + IS R +GV L+ + + + +++ E ET
Sbjct: 758 E-----EDLMIITADGILIRMNIDGISSMGRNTQGVKLISMNEGNHVATVAVVE-KEDET 811
Query: 920 D 920
D
Sbjct: 812 D 812
>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
Length = 878
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/887 (42%), Positives = 547/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD+D++TV+FV N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ S A A L
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEIT-ANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS RT GIIA+ L GDEL V D V + S G V+ D +R + R
Sbjct: 660 LTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GD + S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDSVVSL-IVP------------------RGEGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + DR VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATKGVISIKVT--DRNGP--VVGAVQVDDA---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L S +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDSIDGSVA 856
>gi|366086835|ref|ZP_09453320.1| DNA gyrase subunit A [Lactobacillus zeae KCTC 3804]
Length = 872
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQELPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKLLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +++L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQYELKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K +E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVENEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGQKDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDHDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRSATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
ETD
Sbjct: 810 ETD 812
>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
Length = 820
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/829 (42%), Positives = 536/829 (64%), Gaps = 44/829 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P+++ +E+ S++ YSMSV+ RALPDVRDGLKPVHRRIL+ MH+LG+ K + K
Sbjct: 7 KVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKSYSKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VRMAQ+FS RYPLI GHGNFGS+D D AAAMRYTE +
Sbjct: 67 ARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRYTEVK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +L+ ML ADID+DTV+F PN+DE +KEPS+LP++ P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 MASLATYML-ADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEA--------TLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314
NLGE++D + LI A ++LL+ + GPDFPT GL+MG GI AY TGR
Sbjct: 186 NLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAYTTGR 245
Query: 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDES 374
G + +R K +E ++ K+ +M +I+ EIP+ NKS L+EKIAELV+ K +DGI+D+RDES
Sbjct: 246 GSVKIRAKAIIEKIE-KNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLRDES 304
Query: 375 DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLD 434
+R GMRIVIEL+R +P I++N LY+ T ++ SF N++ ++DG PK + LK +L+ F+
Sbjct: 305 NRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEYFIA 364
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKL 494
+ V+ RR F+L + ++ HIVEG+ LD +D VI I+R + ++ TA L F+
Sbjct: 365 HQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTRFEF 424
Query: 495 SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554
SE+Q+ AILDM LRRLT LER+K + + L ++I +L S K + ++I+ E+ E++
Sbjct: 425 SERQSQAILDMRLRRLTGLEREKLDAQFQKLSDEIAYHLAVLQSDKMVREIIKTELGEIR 484
Query: 555 NRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ---NRGTIG 611
++ PR S++ D+ ++D D+I ++++++ ++ KGY+KR+ T+ Q RG G
Sbjct: 485 VKYDNPRRSIIT-IDTTKMDIEDLIADEDVVITVTHKGYIKRLPLTTYRSQRRGGRGVTG 543
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
S G+ +D + + H +L+FS +G VY RA+ IP+ R A GT ++ +L+LS
Sbjct: 544 MSTGE---SDFVEKLFIASTHHFILFFSTKGKVYRLRAHAIPDAGRTAKGTAMINLLNLS 600
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+IT+ I V +F D +L+ +T G IKK +L + + R G+IA+ L DEL VR
Sbjct: 601 QDEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLDDDDELIAVR 660
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
D + +A+ +G +I + +R + R RG M+L + + +D+I KD+
Sbjct: 661 QTKGKDDILLATPSGKIIRFPENDVRPMGRTARGVRGMKLGKKEYVVGVDVI-GGYDKDM 719
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAA 850
E LL ++E+G KR L FR +G+IG+K + + +LA
Sbjct: 720 E-----------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNKKTGKLAG 762
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ VV S+E++++++ G V R +V IS+Q R A+GV M+
Sbjct: 763 IKVV--------TSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMK 803
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 91/204 (44%), Gaps = 10/204 (4%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNR-GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
+D LL ++ KG +K+ ++ Q + G I + L +D + + D +L +
Sbjct: 616 DDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALT---LDDDDELIAVRQTKGKDDILLAT 672
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
G + + R A G V+ + L E + + + + D L+ +T NG+
Sbjct: 673 PSGKIIRFPENDVRPMGRTARG---VRGMKLGKKEYVVGVDVIGGYDKDMELLTMTENGF 729
Query: 700 IKKVSLNLF--SSIRTTGIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDII 756
K+ L+ F + G+I ++ +L ++ T+++ + + + +G+VI I
Sbjct: 730 AKRTRLDEFRIQNRGGMGVIGHKVNKKTGKLAGIKVVTSEEELMVITDDGIVIRQEVSGI 789
Query: 757 RSLSRNTRGSVAMRLKDGDKMASM 780
R+ +G AM+ + +K+ ++
Sbjct: 790 SVQGRSAQGVTAMKTGEDNKVVAL 813
>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
Length = 892
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/865 (40%), Positives = 553/865 (63%), Gaps = 39/865 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQ+FS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K R+ R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D +LV T G +K+ SL+ FS I G IAI DEL VR ++ +
Sbjct: 605 VKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTDGEEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFSEKALRPLGRTAAGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R + +
Sbjct: 710 N----SEDEVLVVTENGYGKRTPVADYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LMRL G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRL---GDDQFVSTVAKVKQED 814
Query: 920 DLFLPST---SDKLATESGVSEMLQ 941
D + SD ES E+++
Sbjct: 815 DADEAESDIESDNAQGESNSEEVIE 839
>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
Length = 876
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/855 (41%), Positives = 543/855 (63%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG KP
Sbjct: 3 DLAREIAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S + LLAD++++TV+FVPN+D +++ P +LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIS-SELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + +++ L+E++ GPDFPT I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARGEIET-DAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ SF NMV + GQPK M LKE+++AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A + L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S + ++++I +E++ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLDQIAELIHILQSAERLMEVIREELVAMRDQFGDARRTEI-TANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIAI L DEL V +D + S G V+ + +R++ R+
Sbjct: 660 LQEFSRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMGRSAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GDK+ S+ I+P +G+ +L V+++G+GKR
Sbjct: 720 GVRGIRLAEGDKVVSL-IVPRE----------------EGA----ILTVTQNGYGKRTAN 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G+I K + + VVG D +Q+++++ +GT+ R +V +
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGP----VVGTVQVVDS---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
+S+ R +GVIL+R
Sbjct: 812 VSVVGRNTQGVILIR 826
>gi|456014415|gb|EMF48028.1| DNA gyrase subunit A [Planococcus halocryophilus Or1]
Length = 855
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/823 (42%), Positives = 535/823 (65%), Gaps = 37/823 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S + + + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH+LG+++ K +K
Sbjct: 6 SSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITAEKGYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
++ +S LL D++++TV++ N+D +KEP +LP+R P LL+NG SGIAVGMATNIP
Sbjct: 126 SKMSKIS-MELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH+LGE +D + AL NP T +EL+E++ GPDFPTGG+I+G GI AY TG+G + +R
Sbjct: 185 PHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVLIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
++E + + +I+ EIP+Q NK+ L+EKIAELV +K +DGI+D+RDESDR+GMR
Sbjct: 245 SVVDIET--KPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A S+++N+LY+ TA+Q+SF NM+ ++DG+PK + LKE+L +L+ + V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +F+L++ ++R HI+EG+ + LD++D +I ++R + + A L +F L+E+Q+
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER K +E L++ I +L +L++ IL++I++E++E+K RFS
Sbjct: 423 AILDMRLQRLTGLERDKIEEEYLALVKLIEELRYILANDYRILEIIKEEMLEIKERFSDK 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + +D D+IP + +L ++ GY+KR+ NT+ Q RG G+ V + N
Sbjct: 483 RRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRG--GRGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + HD +L+F+++G VY + Y+IPE R A G PLV +L +S E++T+
Sbjct: 541 EDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPEYGRTAKGLPLVNLLEISKEEKVTA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+I V EF D F T G K+ + +++IR G+IAI L DEL V+
Sbjct: 601 VIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELISVKLTDGTKE 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + +++G +I IRS+ R G +RL++GD + M+I+ D
Sbjct: 661 MVIGTKDGALIRFPETDIRSMGRTASGVRGIRLREGDAVVGMEIL-------------DP 707
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFS 857
+ NV L ++E G+GK+ S +R +G+ + + ++ L AV V S
Sbjct: 708 NDNV--------LVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGS 759
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E ++L++ +G + R+ V DIS R +GV L+RL
Sbjct: 760 --------EDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRL 794
>gi|374307332|ref|YP_005053763.1| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
Length = 812
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/823 (44%), Positives = 531/823 (64%), Gaps = 45/823 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ V+L EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL++M + L+ KP++K
Sbjct: 9 KIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTPDKPYRKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A +VG+VLGK+HPHGD AVYD+LV+MAQDFS+RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 69 ATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTESR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+E LS M L D++++TV+ VPN+DE++ EPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 129 MEKLSMEM-LRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI N +ATL+++L+++ GPDFPTG IMGN +L AYRTGRG++ R K
Sbjct: 188 NLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGKVVQRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T E + R +++ EIPYQ NK+ LVEKIAEL+++K +DGI+ I DES+R GMRIV
Sbjct: 248 TSFEEMSGGKTR--IVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+R +P IV+N L++ + LQ FS M+ +++ PK + L+++L+ +L + VV R
Sbjct: 306 IELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEEVVTR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + ++R H+VEG++ +D++D VI I+R S S A L + F SE QA AI
Sbjct: 366 RTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIR--SSYSDAMERLMERFDFSEIQAKAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR- 561
LDM LRRL LE++K DE K L ++I +E+LS R +L +I++E++E+K ++ R
Sbjct: 424 LDMQLRRLQGLEKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYGNERR 483
Query: 562 ---LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
L+ ED +D D+IP+DE+ + ++ GY+KR+ +T+ Q RG G + R
Sbjct: 484 TTFLASYED-----IDIKDMIPDDEVTVTLTHLGYIKRVGIDTYKTQKRGGKGIASMSTR 538
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + ++ H V++F++ G +Y Y+IPE +R A GT +V IL L DGE++ +
Sbjct: 539 DEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLEDGEKVNT 598
Query: 679 IIPV-SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++ + E A F+VM T G +KK L F G+IAI L DEL V +
Sbjct: 599 MLSIREEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGVELTDGNC 658
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ ++NG I+ IRS+ R +G AM L++GD++ SM I A KD
Sbjct: 659 NIICVARNGKAIMFDESDIRSMGRTAQGVRAMNLEEGDEIVSMMI--ADPEKD------- 709
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGF 856
+L +SE G+GKR P++ + G YK + + RL VV
Sbjct: 710 ------------VLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITEKTGRLVGGKVVS- 756
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+D+++++V+ GT+ R++V+ IS+ +R GV LM+
Sbjct: 757 -------NDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMK 792
>gi|398818630|ref|ZP_10577212.1| DNA gyrase, A subunit [Brevibacillus sp. BC25]
gi|398027188|gb|EJL20749.1| DNA gyrase, A subunit [Brevibacillus sp. BC25]
Length = 847
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/839 (41%), Positives = 533/839 (63%), Gaps = 34/839 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R V++ EM S+I+Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ KPF+
Sbjct: 5 TARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVGEV+ +HPHGD+++Y+++VRMAQDF++RY L+ G GNFGS+D DPAAAMRYTE
Sbjct: 65 KSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R L+ LL DID++TV+F+PN+D ++EP +LP+R P LLLNGASGIAVGMATNIP
Sbjct: 125 SRFSKLA-LELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+VD + A+I NP+ T+Q+L++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT++E D K K +I+ EIP+Q NK+ LVEKIAELV K ++GI+D+RDESDR GMR
Sbjct: 244 AKTQIEE-DGKGKPR-IIVTEIPFQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R P +V+N+L++ T +QS+F NM+ ++D +P+ + L+++L +L+ + ++
Sbjct: 302 IVMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVII 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L Q + R HI+EG+ + LD++D +I ++R + + A L + + LS +QA
Sbjct: 362 RRRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQ 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + LM +I +L +L+ I +I E+ E+K +F
Sbjct: 422 AILDMRLQRLTGLEREKIENEYQELMVKIAELRAILADEGKIYAIIRDELGEIKEKFGDA 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D ++D D+IP +++++ ++ GY+KR+ +T+ Q RG G + +
Sbjct: 482 RRTEI-TFDENHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTKDD 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD++++F+ +G VY + ++IP+ +R A GTP++ ++ + GER++++I
Sbjct: 541 DFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVSAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF + FL T G IKK +L + +IR G+IA+ L DEL VR +
Sbjct: 601 PVKEFDQEHFLFFATKKGIIKKTTLESYGNIRKGGLIAVNLREDDELIGVRLTDGQQQII 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M + GM + + +R++ RN G + L +D
Sbjct: 661 MGTHKGMSVRFNEGDVRTMGRNATGVKGITLD---------------------DDDDVID 699
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLA 859
+L V+ +G+GKR P+ +R + G G K + DR VVG +
Sbjct: 700 MDVIKPNAEVLIVTANGYGKRTPVDEYR---IQSRGGKGIKTHNVTDRSGP--VVGLKVV 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E +E +++++ SG + R +++ IS+ RY +GV L+RL + ++ S + TE E
Sbjct: 755 ---EPEEDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVAKCPPTEEE 810
>gi|417643979|ref|ZP_12294001.1| DNA gyrase, A subunit [Staphylococcus warneri VCU121]
gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
Length = 892
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/865 (40%), Positives = 553/865 (63%), Gaps = 39/865 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQ+FS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K R+ R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D +LV T G +K+ SL+ FS I G IAI DEL VR ++ +
Sbjct: 605 VKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTDGEEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFSEKALRPLGRTAAGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R + +
Sbjct: 710 N----SEDEVLVVTENGYGKRTPVADYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LMRL G Q S ++ + E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRL---GDDQFVSTVAKVKQED 814
Query: 920 DLFLPST---SDKLATESGVSEMLQ 941
D + SD ES E+++
Sbjct: 815 DADEAESDIESDNAQGESSNEEVIE 839
>gi|420457045|ref|ZP_14955864.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-16]
gi|393074443|gb|EJB75203.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-16]
Length = 828
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + +KIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVHKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
Length = 836
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/828 (41%), Positives = 527/828 (63%), Gaps = 42/828 (5%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M S++ YSM+V++ RALPDVRDGLKPVHRRIL+ MHE GL+ + ++KCA VG VLG+
Sbjct: 15 MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD +VYD+LVR+AQ FSLRYPL+ GHGNFGS+D DP AA RYTE ++ ++ ML
Sbjct: 75 YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMAKMAVNML- 133
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI +DTV+F N+D+ +EP +LP+R P +L NGA GIAVGMATNIPPHNL E+++ +
Sbjct: 134 TDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIPPHNLHEVIEGMK 193
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
+I NP+ TL EL++ + GPDFPTGG+IMG GI AY TGRG+IT+R KT +E +
Sbjct: 194 IVIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLRSKTSIEEIKG-- 251
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
R +++ EIPY NK+ LVE IA LV++K ++GI D+RDE+ R GMRIVIELK+ A+P
Sbjct: 252 -RNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIVIELKKDANPQ 310
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
+V+N L+ T LQ S ++ +++G PK + LK++LQ ++DF+ SV+ RR F L + K
Sbjct: 311 VVLNKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAK 370
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTM 512
ER HI++G+++ LDN+D VI I++ + S A L F L++ QAD I M L RLT
Sbjct: 371 EREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFGLTDVQADHIAQMTLGRLTG 430
Query: 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQ 572
+ER+K +DE + + LE++L++ + + +I +EV ++ +F R + +E+ SG+
Sbjct: 431 MERQKIIDELAEITATVADLEDILANEQRVFDIIIEEVEAIQEKFGDERRTQIENV-SGE 489
Query: 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAH 632
+D D+IP +E ++ + GY+KRM + + QNRG G + K R +D +++ VC +H
Sbjct: 490 VDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQREDDCITEMSVCSSH 549
Query: 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLV 692
D++L+ + +GI Y + Y++PE ++ + G + +L LSD I ++I V +F D+++V
Sbjct: 550 DNILFITTKGIAYKMKCYELPEGSKASRGVNIKNLLELSDDNLIAAMIKVEDFDDDKYIV 609
Query: 693 MLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSS 752
M+T G IK+ L+ + ++R G+IAI L GDE+ VR + + +A+ NGM I S
Sbjct: 610 MVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGDEIAGVRLTGGQNELLIATHNGMAIRIS 669
Query: 753 CDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLF 812
+ +R +SR G A++L++GD + SM I G +L
Sbjct: 670 ENDVRVMSRTAHGVRAIKLREGDYVVSMARI---------------------REGATVLT 708
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
VSE+G G+RV L ++ G++ YK V G + ++ ++ ++++S
Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGVLNYKNGE--------VCGIKVVDE---EDDIIMIS 757
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
G V R++ DIS+ RY+RGV LM++ K+ ++ T E D
Sbjct: 758 SDGIVIRLRACDISVMGRYSRGVRLMKVAGENKV-----VTFTRTEHD 800
>gi|406906680|gb|EKD47764.1| hypothetical protein ACD_65C00296G0001 [uncultured bacterium]
Length = 883
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/862 (41%), Positives = 534/862 (61%), Gaps = 38/862 (4%)
Query: 52 PPSSRTPILASKDEERNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALP 111
PP + ++D++ G T N+S +EM Y+ Y+MSV++ RALP
Sbjct: 28 PPETENTKNNTQDQQTMGFFDANTKLRNIS---------DEMEECYLDYAMSVIVSRALP 78
Query: 112 DVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQD 171
DVRDGLKPVHRRILF+MHELGL F+K A VVG+VLGK+HPHGD+AVYDS+VR+AQD
Sbjct: 79 DVRDGLKPVHRRILFSMHELGLRPNSSFRKSATVVGDVLGKYHPHGDSAVYDSMVRLAQD 138
Query: 172 FSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQK 231
FS+RY L+RG GNFGSID D AAAMRYTE ++E ++E M LADI+++TV + N+D K
Sbjct: 139 FSMRYTLVRGQGNFGSIDGDSAAAMRYTEAKMEKITEEM-LADIEKETVKWTENYDGRLK 197
Query: 232 EPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPG 291
EP++LPAR+P LLLNG GIAVGMATNIPPHNLGEL+D L NP+ T+++L++++ G
Sbjct: 198 EPTVLPARIPQLLLNGTMGIAVGMATNIPPHNLGELIDGTMHLTDNPDCTIEDLMQFIKG 257
Query: 292 PDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSML 351
PDFPT G+I I + Y GRG I +R K ++ ++ K + +II EIPYQ NKS L
Sbjct: 258 PDFPTSGVIYDVNAIKEMYTNGRGGIVIRAKADI--VEKKGNKFQIIITEIPYQINKSTL 315
Query: 352 VEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCN 411
V KIA+LV +K + GI+DIRDES+R G+RIV+ELK+ + P V+N L++LT +Q +F+ N
Sbjct: 316 VTKIADLVRDKKIKGITDIRDESNREGIRIVVELKKESYPKKVLNQLFKLTPMQDTFNMN 375
Query: 412 MVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDR 470
M+ ++DG QP+ + LK+VL+ F+ R V+ R +++L K R HI+EG+ + LD++D
Sbjct: 376 MIALVDGLQPRLLNLKQVLEYFIAHRKEVITNRTKYELKMAKARAHILEGLNIALDHIDA 435
Query: 471 VIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
VI ++++ + A AAL +FKLS+ Q+ AIL+M L+ L LERKK DE K + I
Sbjct: 436 VIETIKKSATKEDAQAALMKKFKLSDLQSQAILEMRLQTLAGLERKKIEDEYKEKLALID 495
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
+LE++L K +L+++++E+ E+K +++ R + + G++ D IPN M++ +++
Sbjct: 496 ELEDILKDTKKVLKIMKKELAEIKEKYADERKTEIVPHAIGEISQKDTIPNAPMVITLTK 555
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
+ Y+KR+ P++F Q RG G + D + HD V++F+ +G V+ Y
Sbjct: 556 ENYIKRLPPSSFRTQKRGGKGVVGMATKEEDEIDIVKFAMNHDDVMFFTSKGRVFKLPVY 615
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+IP+ +R A G P+V +L L+DGERITSI+ E QFL M T G +KK + F +
Sbjct: 616 EIPQASRQAKGLPVVNLLQLADGERITSILTSGEEKAGQFLFMATRKGTVKKTPMEDFKN 675
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
IR TG+IAI+L D+L+WVR + + + + G I +RS+ R + G +R
Sbjct: 676 IRKTGLIAIKLRDDDDLEWVRQTNTGERIVLVTHEGKCIQFDEADVRSMGRASMGVRGIR 735
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
+K D MD+I + LL V +G GKR PLSS+R
Sbjct: 736 VKGNDYCVQMDVIK--------------------NENADLLVVMSNGLGKRTPLSSYR-- 773
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G G K +A V+G S+ + +D ++++S+ G + ++ + I + R
Sbjct: 774 -FQGRGGSGVK-TANITEKTGKVIGASVIME-TTDSDLIIISKHGQIIKMPLASIPARGR 830
Query: 891 YARGVILMRLELSGKIQSASLI 912
+GV LMRL + S S+I
Sbjct: 831 ATQGVYLMRLNSGDIVASISVI 852
>gi|383935681|ref|ZP_09989115.1| DNA gyrase subunit A [Rheinheimera nanhaiensis E407-8]
gi|383703250|dbj|GAB59206.1| DNA gyrase subunit A [Rheinheimera nanhaiensis E407-8]
Length = 872
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/858 (42%), Positives = 541/858 (63%), Gaps = 71/858 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ IVP+ + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG K
Sbjct: 3 DLAREIVPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMKELGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P+++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMARIAHE-LLADLDKETVDYVPNYDGTEQIPAVMPTKVPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D ALI NP+ L EL++Y+PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVIDGCLALIANPDIELHELMQYIPGPDFPTAAIINGRKGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R KTE+E D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRAKTEIE-TDEKTGREAIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKRG +++N LY T +Q+ F NMV + GQPK + LKE+LQ F+ R
Sbjct: 301 MRIVIELKRGESSDVMLNQLYANTQMQTVFGINMVALDQGQPKLLSLKEMLQCFVLHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKD-------- 490
VV RR + L + ++R HI+EG+ + L N+D +I +++ +PS + A L D
Sbjct: 361 VVTRRTVYDLRKARDRAHILEGLAIALANIDDIIELIKTSPSPAEAKLRLVDRGWQLGDV 420
Query: 491 --------------------------EFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 421 SAMLERAGQDAARPEWLEAHFGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI---DIIPN 581
L+E I +L +L+S + ++++I +E+ +K ++ R + ++D + DI D+I
Sbjct: 481 LLELIAELLHILASPERLMEVICEELEAIKTQYGDARRTDIQD----NMLDINMEDLITE 536
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR 641
+++++ +S GY K + + Q RG GK+ ++ D + +V HD +L FS+R
Sbjct: 537 EDVVVTLSHLGYAKYQPLSDYEAQRRGGKGKAATTVKDEDFVDKLLVASTHDTILCFSNR 596
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701
G +Y + Y++P +R A G P+V +L L +GERI +I+PV E+ ++++ M T NG +K
Sbjct: 597 GRLYWMKVYQLPLASRTARGKPIVNLLPLEEGERINAILPVREYEENKYVFMATANGTVK 656
Query: 702 KVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSR 761
K SL +S R+ GIIA+ L GD L V + + + S +G V+ + D +RS+ R
Sbjct: 657 KTSLTEYSRPRSNGIIAVNLNDGDRLIGVGITDGNSEIMLFSDDGKVVRFAEDQVRSMGR 716
Query: 762 NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKR 821
G ++L++G + S+ IIP SGP +L V+E+G+GKR
Sbjct: 717 TATGVRGIKLREGGSVVSL-IIP-------------------NGSGP-ILTVTENGYGKR 755
Query: 822 VPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
L + G++ K S + L VVG + E DE ++++S GT+ R +
Sbjct: 756 TALQEYPAKSRATQGVVSIKVSERNGL----VVG--AVQVNELDE-IMMISNKGTLVRTR 808
Query: 882 VRDISIQARYARGVILMR 899
V ++S R +GVIL+R
Sbjct: 809 VNEVSEVGRNTQGVILIR 826
>gi|433543635|ref|ZP_20500037.1| DNA gyrase subunit A [Brevibacillus agri BAB-2500]
gi|432185071|gb|ELK42570.1| DNA gyrase subunit A [Brevibacillus agri BAB-2500]
Length = 843
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/832 (41%), Positives = 537/832 (64%), Gaps = 37/832 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R V++ +EM S+I+Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ K F+
Sbjct: 5 TARFPKVDISQEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKAFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVGEV+ +HPHGD+++Y+++VRMAQDF++RY L+ G GNFGS+D DPAAAMRYTE
Sbjct: 65 KSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R L+ LL DID++TV+F PN+D ++EP +LP+R P LLLNGASGIAVGMATNIP
Sbjct: 125 SRFSKLA-LELLRDIDKETVDFTPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + A+I NP+ T+Q+L++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLTEVIDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGFSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT++E K + +I+ EIPYQ NK+ LVEKIAELV K ++GI+D+RDESDR GMR
Sbjct: 244 AKTQIEEDKGKPR---IIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMR 300
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R P +V+N+L++ T +Q++F NM+ ++DG+P+ + L+++L +L + ++
Sbjct: 301 IVMELRRDVIPKVVLNNLFKHTQMQTTFGVNMLALVDGRPRVLNLRDMLYYYLQHQRVII 360
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L Q + R HI+EG+ + LD++D +I ++R + + A L + LS +QA
Sbjct: 361 RRRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEAREGLMTNYSLSYEQAQ 420
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + L+ +I +L +L+ I +I +E+ E+K +F
Sbjct: 421 AILDMRLQRLTGLEREKIENEYQELLAKIAELRAILADEAKIYAIIREELGEIKEKFGDE 480
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D ++D D+IP +++++ ++ GY+KR+ +T+ Q RG G + +
Sbjct: 481 RRTAI-TFDEDHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTKDD 539
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD++++F+ +G VY + ++IP+ +R A GTP++ ++ + GER++++I
Sbjct: 540 DFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVSAVI 599
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF ++FL T G IKK +L + +IR G+IA+ L DEL VR +
Sbjct: 600 PVKEFDHERFLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQQEII 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII-PAALHKDLERTPEDSH 799
M +Q GM + S +R++ RN G + L D D + MD+I P A
Sbjct: 660 MGTQKGMSVRFSESDVRTMGRNATGVKGITLDDDDNVIDMDVIKPNA------------- 706
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSL 858
+L V+ +G+GKR P+ +R + G G K + +R VVG +
Sbjct: 707 ---------EVLIVTANGYGKRTPVDEYR---IQSRGGKGIKTHNVTERSGP--VVGLKV 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
E +E +++++ SG + R +++ IS+ RY +GV L+RL + ++ S +
Sbjct: 753 V---EPEEDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVA 801
>gi|399054864|ref|ZP_10743101.1| DNA gyrase, A subunit [Brevibacillus sp. CF112]
gi|398047394|gb|EJL39929.1| DNA gyrase, A subunit [Brevibacillus sp. CF112]
Length = 843
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/832 (41%), Positives = 537/832 (64%), Gaps = 37/832 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R V++ +EM S+I+Y+MSV++ RALPDVRDGLKPVHRRIL+AMH++GL+ K F+
Sbjct: 5 TARFPKVDISQEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKAFR 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K A VVGEV+ +HPHGD+++Y+++VRMAQDF++RY L+ G GNFGS+D DPAAAMRYTE
Sbjct: 65 KSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R L+ LL DID++TV+F PN+D ++EP +LP+R P LLLNGASGIAVGMATNIP
Sbjct: 125 SRFSKLA-LELLRDIDKETVDFTPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D + A+I NP+ T+Q+L++ + GPDFPT G I+G GI AY TGRG I +R
Sbjct: 184 PHNLTEVIDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGFSGIRRAYETGRGSIIMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT++E K + +I+ EIPYQ NK+ LVEKIAELV K ++GI+D+RDESDR GMR
Sbjct: 244 AKTQIEEDKGKPR---IIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMR 300
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IV+EL+R P +V+N+L++ T +Q++F NM+ ++DG+P+ + L+++L +L + ++
Sbjct: 301 IVMELRRDVIPKVVLNNLFKHTQMQTTFGVNMLALVDGRPRVLNLRDMLYYYLQHQRVII 360
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR + L Q + R HI+EG+ + LD++D +I ++R + + A L + LS +QA
Sbjct: 361 RRRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEAREGLMTNYSLSYEQAQ 420
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E + L+ +I +L +L+ I +I +E+ E+K +F
Sbjct: 421 AILDMRLQRLTGLEREKIENEYQELLAKIAELRAILADEAKIYAIIREELGEIKEKFGDE 480
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + D ++D D+IP +++++ ++ GY+KR+ +T+ Q RG G + +
Sbjct: 481 RRTAI-TFDEDHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTKDD 539
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + +HD++++F+ +G VY + ++IP+ +R A GTP++ ++ + GER++++I
Sbjct: 540 DFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVSAVI 599
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF ++FL T G IKK +L + +IR G+IA+ L DEL VR +
Sbjct: 600 PVKEFDHERFLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQQEII 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII-PAALHKDLERTPEDSH 799
M +Q GM + S +R++ RN G + L D D + MD+I P A
Sbjct: 660 MGTQKGMSVRFSESDVRTMGRNATGVKGITLDDDDNVIDMDVIKPNA------------- 706
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSL 858
+L V+ +G+GKR P+ +R + G G K + +R VVG +
Sbjct: 707 ---------EVLIVTANGYGKRTPVDEYR---IQSRGGKGIKTHNVTERSGP--VVGLKV 752
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
E +E +++++ SG + R +++ IS+ RY +GV L+RL + ++ S +
Sbjct: 753 V---EPEEDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVA 801
>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
DSM 16041]
gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
DSM 16041]
Length = 835
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/843 (41%), Positives = 539/843 (63%), Gaps = 36/843 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+S RI V+L +M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+
Sbjct: 1 MSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GKFHPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYT
Sbjct: 61 KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ ML DI++DTV+F PN+D ++KEP++LPAR P LL+NGASGIAVGMATNI
Sbjct: 121 EARMSKIALEML-RDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNI 179
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
P HNLGE++ + L++NP+ T+ EL++ +PGPDFPTGG++MG GI AY TGRG I V
Sbjct: 180 PTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIV 239
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K ++E + K+ + +I+ EIPY NK+ L+ +IA+L NK +DGI+D+ DE+DR GM
Sbjct: 240 RAKVDIE--EQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGM 297
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVI+++R A +++N+LY++T +Q++F+ NM+ I++G PK + LK++LQ +L+ + V
Sbjct: 298 RIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDV 357
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
V RR F L + + R HIVEG+ + LD++D +I I+R++ ++ A L + LS++QA
Sbjct: 358 VRRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQA 417
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RLT LER+K E + L E I +++L+ ++ I Q+I E++E++ +F
Sbjct: 418 QAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAHKERINQIIYDELMEIQKKFGD 477
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + L+ D ++D D+I ++++ ++ GY+KR+ + F Q+RG G +
Sbjct: 478 KRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHN 537
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + I HD +L+F++ G VYS + Y++PE R+A G P++ +L++ E+I+++
Sbjct: 538 DDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRSAQGIPIINLLNIDSQEKISAV 597
Query: 680 IPVSEFAG--DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
I VS D+FL T G +K+ + F +IR+ G+ AI L DEL V +
Sbjct: 598 INVSHETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLKAINLHDDDELMDVDVIEDQQ 657
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + ++NG + + ++RS+ R G +RL+D D + I A LH+D
Sbjct: 658 TMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDHDFV----IGAAPLHQD------- 706
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
NV L +SE+G GK+ P + + P+ G +G K + V +
Sbjct: 707 --DNV--------LVISENGFGKQTPAAEY---PIKGRGGLGVKTVNVTKKNGPLVGMTT 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+A DE ++LV+ G + R + +S R A GV L++++ K+ + + + E
Sbjct: 754 VA----GDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKV---EK 806
Query: 918 ETD 920
E D
Sbjct: 807 EDD 809
>gi|404449129|ref|ZP_11014120.1| DNA gyrase subunit A [Indibacter alkaliphilus LW1]
gi|403765233|gb|EJZ26115.1| DNA gyrase subunit A [Indibacter alkaliphilus LW1]
Length = 841
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/843 (42%), Positives = 543/843 (64%), Gaps = 37/843 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + +EM G+YI YSMSV++ RALPDVRDGLKPVHRRILF M ELG+ KP+KK A
Sbjct: 9 IIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGVLHNKPYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLGK+HPHGD+AVY+++VRMAQ +SLRYPL+ G GNFGS+D D AAMRYTE RL
Sbjct: 69 RIVGEVLGKYHPHGDSAVYETMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMRYTEARL 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E +L+ DI+++TV+F NFD+S KEP +LPA++P LLLNGASGIAVGMATN+ PHN
Sbjct: 129 KRIAEELLI-DINKETVDFQLNFDDSLKEPVVLPAKIPALLLNGASGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD + A I N E T+ EL+EY+ PDFPTGG+I G G+ A+ TGRGR+ +RGK
Sbjct: 188 LGEVVDGIIAFIDNREITISELMEYIVAPDFPTGGIIYGYNGVKAAFETGRGRVVIRGKA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E D+ + +II EIPY NK+ ++EK A+L+ K +DGIS IRDESDR GMR+V
Sbjct: 248 EIETKDNGKE--AIIISEIPYLVNKASMIEKTAQLINEKKIDGISAIRDESDRQGMRVVY 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P++++N+LY+ T LQ+SFS N V ++ G+P+ + LK+++ +++ R VV RR
Sbjct: 306 ELKRDAIPNVILNNLYKQTQLQTSFSVNNVALVKGRPQTLNLKDMIFHYVNHRHEVVIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++L + ++R HI+EG ++ LDNLD VI ++R + TA L ++F+LSE QA AIL
Sbjct: 366 TEYELREAEKRAHILEGYLIALDNLDEVISLIRSSRDPETARNGLMEKFELSEIQARAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT +ER K E K +M I L+++L S + +Q+I+ E+ E+K+R++ R +
Sbjct: 426 DMRLQRLTGMERDKIQAEYKEIMALIEDLKDILGSEERRMQIIKDELTEIKDRYADARRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++E ++ D+IPN+E+++ +S +GYVKR + Q RG +G + +D
Sbjct: 486 VIE-HNAEDFSYEDMIPNEEVIITVSHQGYVKRTLLAEYRTQGRGGVGSKGVSTKEDDWT 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
H+++L F+D G ++ + Y IPE ++ + G P+ ++++ ++I SII V
Sbjct: 545 EYLFTASTHNYLLIFTDHGKLFWLKTYAIPEGSKTSKGRPIQNLINIEAEDKIRSIIQVA 604
Query: 683 ----SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+++ + FLVM+T G IKK +L +S R+ GIIA+ + D+L V D
Sbjct: 605 DLDDADYINNHFLVMVTKQGIIKKTTLEQYSRPRSNGIIALNIREDDQLLRVDMTNGDSH 664
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I +R + R G A++L D D++ M + + ED
Sbjct: 665 IIIAAKSGRAIHFHESTVRPMGRTATGVKAIKLSDVNDEVVGM----------VCASRED 714
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
++ LL VSE G+GKR PL +R NR G + ++ ++ +
Sbjct: 715 AN----------LLVVSEKGYGKRSPLDEYR--ITNRGGKGVKAMNVTEKTGSL----VA 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+ E +SD+ ++++++SG R V ++ + R +GV L++L + +I S I E
Sbjct: 759 IKEVVDSDD-LMIINKSGITIRTPVANLRVMGRATQGVRLIKLSENDQISSVEKIEKDED 817
Query: 918 ETD 920
E +
Sbjct: 818 EVE 820
>gi|217965928|ref|YP_002351606.1| DNA gyrase subunit A [Listeria monocytogenes HCC23]
gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
gi|386006720|ref|YP_005924998.1| DNA gyrase subunit A [Listeria monocytogenes L99]
gi|386025295|ref|YP_005946071.1| DNA gyrase subunit A [Listeria monocytogenes M7]
gi|404406490|ref|YP_006689205.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2376]
gi|422810894|ref|ZP_16859305.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-208]
gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
gi|336021876|gb|AEH91013.1| DNA gyrase subunit A [Listeria monocytogenes M7]
gi|378751099|gb|EHY61690.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-208]
gi|404240639|emb|CBY62039.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2376]
Length = 842
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/835 (42%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL HNPE T+++L+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|406992105|gb|EKE11512.1| hypothetical protein ACD_15C00066G0007 [uncultured bacterium]
Length = 810
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/826 (41%), Positives = 519/826 (62%), Gaps = 26/826 (3%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E+ +EM+ SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M GL S F+K A VVG
Sbjct: 10 EITKEMSQSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMWNTGLRSNAKFRKSATVVG 69
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EVLGK+HPHGD AVYDS+VRMAQDFSLRYP+++G GNFGS+D D AA RYTE +L ++
Sbjct: 70 EVLGKYHPHGDVAVYDSMVRMAQDFSLRYPMVKGQGNFGSMDGDSPAAYRYTEAKLSQMA 129
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
E ML+ DI+++TVNFVPNFD EP +LP+ LP LLLNG+ GIAVGMATNIPPHNLGEL
Sbjct: 130 EEMLI-DIEKNTVNFVPNFDGQHNEPMVLPSNLPQLLLNGSMGIAVGMATNIPPHNLGEL 188
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+D + LI NP AT+++L E++ GPDFPTGG+I IL+AY+TGRG+I R K ++
Sbjct: 189 IDGISHLIDNPNATIEDLAEFVKGPDFPTGGIIYNKKDILEAYKTGRGKILTRAKADI-- 246
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
++K+ +II E+ Y TNK+ ++EK+A+LV + GI DIRDESD+ G+R+VI+LK+
Sbjct: 247 FETKAGAFQIIITEMTYATNKAAMIEKMADLVHEGKIVGIRDIRDESDKDGVRLVIDLKK 306
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRARF 446
A P V+N LY LT LQ +F NM+ ++DG +P + LK +L+ ++ R +V+ R+ +F
Sbjct: 307 DAYPQKVLNKLYSLTDLQKNFGVNMLALVDGIEPTVLNLKAILEYYIIHRKTVIRRKTQF 366
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + ++R HI+EG+ LD++D +I ++++ + A A L +FK S++Q AIL+M
Sbjct: 367 ELDKARDRAHILEGLKKALDHIDEIIETIKKSQTRELAHANLMKKFKFSDRQTTAILEMR 426
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+ L LERKK DE K + I +LE +L S K IL +++ E+I +K +F R + +
Sbjct: 427 LQTLAGLERKKIEDELKEKLALIKELEAILKSEKKILDIVKNELIRVKEKFGDERRTKVI 486
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
+ G+ D+IPN+E ++ I+E+GY+KRM PN + +Q RG G + D +
Sbjct: 487 KSGVGEFKQEDLIPNEEAIITITEQGYIKRMDPNVYKVQKRGGKGVIGAVTKEEDGIKKV 546
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ HD +L+F+D G V+ +AY+IP +R A G +V L LS E +T+I+P +
Sbjct: 547 LAVMTHDDLLFFTDSGKVFQTKAYEIPTSSRIAKGQSIVNFLQLSQEETVTAIVPFIKED 606
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
++L+M T G +KK + F+++R +G+IAI L D LKWV T D + + + G
Sbjct: 607 NFKYLLMTTELGTVKKTPMEDFANVRRSGLIAINLAKDDMLKWVEATTGQDEIIITTSKG 666
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I +R + R+ G ++L+ D + MD + K
Sbjct: 667 QAIRFKESDVRPMGRSAAGVRGIKLRKEDSVVGMDAV------------------FKNQK 708
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
G L+ ++E+G GKR L +++ + + G G K +A VVG ++ E +E
Sbjct: 709 GNQLMIITENGFGKRSDLKAYK---IQKRGGSGIK-TANVTTKTGNVVGANIVNMDEMEE 764
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
++L S G + RI + + R +GV +M+ + K+ + +++
Sbjct: 765 DLILSSGKGQIIRIPLNSVPTLGRATQGVRVMKPQPGDKVAATTVL 810
>gi|392377378|ref|YP_004984537.1| DNA gyrase, subunit A [Azospirillum brasilense Sp245]
gi|356878859|emb|CCC99751.1| DNA gyrase, subunit A [Azospirillum brasilense Sp245]
Length = 945
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/899 (41%), Positives = 547/899 (60%), Gaps = 82/899 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G S KP+KK A
Sbjct: 12 IAPVTIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGGYDSTKPYKKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+A+YD++VRMAQDFS+R PLI G GNFGS+D DPAAAMRYTE RL
Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDPAAAMRYTEARL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+EA LL DID+DTV+F N+D+S KEP+++PAR P LL+NGA GIAVGMATNIP HN
Sbjct: 132 AKAAEA-LLDDIDKDTVDFQANYDDSGKEPTVVPARFPNLLVNGAGGIAVGMATNIPTHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+VD CA I N + T +EL+E++PGPDFPTGG+I+G G+ A TGRG + +R KT
Sbjct: 191 LSEVVDACCAYIDNNDVTDEELMEFVPGPDFPTGGMILGRSGVRSALMTGRGSVIIRAKT 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + R ++ EIPYQ NKS L+E+I E+V +KT++GI+D+RDESDR G+R+VI
Sbjct: 251 EIEEI--RKDRFAIVATEIPYQVNKSKLMERIGEVVNDKTIEGIADLRDESDRDGVRVVI 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +V+ L+R T LQ+SF NM+ + G+P+ M L++++ AF+ FR V+ RR
Sbjct: 309 ELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLRQIIAAFVRFREQVITRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASA----------------A 487
F L + +ER H + G+ V + NLD +I ++R AP A A
Sbjct: 369 TEFLLGKARERAHTLVGLAVAVANLDAMIALIRSAPDPVWAREQMMEREWPAMDVAPLIA 428
Query: 488 LKDE----------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
L DE ++LSE+QA AILD+ L RLT LER + E K + +QI E L+
Sbjct: 429 LIDEPGRGVSENGTYRLSEEQARAILDLRLHRLTGLERDRIGAELKDVTDQIADYLETLA 488
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
+R +L ++ E++E+K RF TPR + +++ + + D D+I ++M++ +S+ GYVKR+
Sbjct: 489 NRAKLLGILRDELVEMKERFGTPRRTEIQELEF-EADIEDLIQREDMVVTVSQSGYVKRV 547
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+T+ Q RG G+S ++ DA+SD V H +L FS RG+VY + Y++P
Sbjct: 548 PLSTYRAQKRGGKGRSGMSMKAEDAVSDLFVANTHTPLLLFSSRGMVYKLKVYRLPLGNP 607
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
A G V +L L DGE IT+++P+ E D +V T G +++ L+ F++IR+
Sbjct: 608 QARGKAFVNLLPLIDGETITTVLPLPEDEAVWADLHVVFATSKGNVRRNRLSDFANIRSN 667
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G+IA++L G+ L VR C+ D V +A+ G I +R + R + G +RL
Sbjct: 668 GLIAMKLEEEGERLIAVRTCSEADDVLLATGGGKCIRFEVADVRVFAGRTSTGVRGIRLA 727
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHS----------NVKGSSGP-------------- 808
DGD++ SM LH +E +PE+ + +++G + P
Sbjct: 728 DGDEVISM----TTLHH-VESSPEERAAFLKRKREEGVDMEGEAAPEADEVSTESVTLSP 782
Query: 809 -----------WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
++L V+E G+GKR SS+ R G + +R ++ V F
Sbjct: 783 ERYEELKGLEQYVLTVTERGYGKRT--SSYEYRVTGRGGQGIWNMEMGERNGSI-VAAFP 839
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ E QV++V+ G V R+ + D+ I R GV L R+ ++ S + I+ E
Sbjct: 840 V----EDSHQVMMVTNGGQVIRMPIHDVRIAGRKTLGVTLFRVGADERVVSVASIAEDE 894
>gi|332290506|ref|YP_004421358.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
Length = 877
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/885 (41%), Positives = 551/885 (62%), Gaps = 58/885 (6%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I+PV + EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM G KP
Sbjct: 3 DLAKDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+V+GK+HPHGD+AVYD+LVRMAQ FSLRYPL+ G GNFGSID D AAMRY
Sbjct: 63 YRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++ PN+D S+ P +LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEARMTQIAHE-LLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+VD A I N + T+ EL+ Y+PGPDFPT +I G GI +AY+TGRG+I
Sbjct: 182 IPPHNLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K ++E D R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRAKADIETDD--KGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A IV+N+LY LT LQ +F N+V + GQPK + LKE+++AF+ R
Sbjct: 300 MRIVIEVKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------- 491
VV RR ++L + +ER HI+EG+ + L N+D +I ++R AP+ + A L +
Sbjct: 360 VVTRRTVYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNV 419
Query: 492 ---------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ LSE QA AILD+ L++LT LE +K +DE K+
Sbjct: 420 EAMLAAAGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKS 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++ I +L +L S ++++I +E+ ++K +++ PR + + A SG ++ D+I +++
Sbjct: 480 LLDVIAELLHILHSPARLMEVIREELEKIKAQYNDPRRTEIT-ASSGDINLEDLINPEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD +L FS RG +
Sbjct: 539 VVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRL 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P+ +R A G P+V +L L + ERIT+I+PV E+A D+F+VM T G +KK +
Sbjct: 599 YWLKVYQLPQASRGARGRPIVNLLPLEENERITAILPVKEYAEDKFIVMATAGGLVKKTA 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R GIIA+ L DEL V ++ + + S G V+ + +R++ R
Sbjct: 659 LTEFSRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAMGRTAA 718
Query: 765 GSVAMRL---------KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSE 815
G ++L ++ ++ + D +L +++ S V + +L ++
Sbjct: 719 GVRGIKLALTNDISDEENDNEESGNDETDQSLDLSIDKVV----SLVIPKTNGAILTATQ 774
Query: 816 SGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSG 875
+G+GKR L+ + N G+I K S +R V A E ++Q++L++ +G
Sbjct: 775 NGYGKRTDLAEYPTKSRNTKGVISIKVS--ERNGKVVA-----AAQVEENDQIMLITDAG 827
Query: 876 TVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
T+ R +V +IS+ R +GV L+R + ++ S + + E D
Sbjct: 828 TLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERVCDDDEEND 872
>gi|337286586|ref|YP_004626059.1| DNA gyrase subunit A [Thermodesulfatator indicus DSM 15286]
gi|335359414|gb|AEH45095.1| DNA gyrase, A subunit [Thermodesulfatator indicus DSM 15286]
Length = 807
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/828 (42%), Positives = 528/828 (63%), Gaps = 35/828 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IV V + EE+ SY+ Y+MSV++GRALPDVRDGLKPV RRIL+AMHEL KP+KK A
Sbjct: 4 IVQVPIEEELKKSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMHELRNDWNKPYKKSA 63
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD AVYD+LVRMAQDF++RYPLI G GNFGS+D D AAMRYTE R+
Sbjct: 64 RIVGDVIGKYHPHGDMAVYDTLVRMAQDFTMRYPLIDGQGNFGSMDGDAPAAMRYTEVRM 123
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ LL DI+++TV+F+PN+D + +EP +LP+R+P LL+NGA+GIAVGMATNIPPHN
Sbjct: 124 AKIAHE-LLRDIEKETVDFMPNYDNTLQEPVVLPSRIPNLLINGAAGIAVGMATNIPPHN 182
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D L A+IHNP+ TL ELL+++ GPDFPTG I G GI +AY TG+G I +R +
Sbjct: 183 LGEVIDALVAMIHNPDITLDELLKHIKGPDFPTGAYIYGIEGIKEAYATGKGLIKLRARA 242
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + ++I E+PYQ NK+ LVEKIA L + K ++GIS++RDESDR G+R+V+
Sbjct: 243 HIE---REGNKTAIVITELPYQVNKAKLVEKIAALAQEKKIEGISEVRDESDREGLRVVV 299
Query: 384 ELKRGAD--PSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
ELKR +++N LY+LT L+++F M+ +++ +P+Q+ L+E+L FL R +VV
Sbjct: 300 ELKREKQDFAPVILNQLYKLTPLETTFGIIMLALVNNRPEQLSLRELLGHFLAHRRNVVI 359
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + KER H+VEG+++ L NLD VI +++ + + + A L ++F L+ QA A
Sbjct: 360 RRTLYDLRKAKERAHVVEGLLIALANLDEVIALIKSSKTPAEAKEGLMEKFGLTAIQAQA 419
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LE++K E + L QI E++L+ K +L++IE E++ +K F+ R
Sbjct: 420 ILDMRLQRLTGLEQEKLKAEYEELKRQIAWFEKILADEKVLLKVIEDELLAIKKEFADER 479
Query: 562 LS-MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
+ ++ A ++ D+I +E+++ I+ +GY+KR+ NT+ Q RG GK+
Sbjct: 480 RTEIIPKAQDLAVE--DLIAEEEVVVTITHRGYIKRLPANTYRSQRRGGKGKTGVGAGEE 537
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D ++ V HD+ L F+++G +Y + Y IP+ R A GT L +L LS E+I +I+
Sbjct: 538 DVVTQLYVATTHDYFLCFTNKGKLYWLKVYDIPQAGRTAKGTSLRNLLPLSQDEKIATIL 597
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
PV EF DQF+ T G +KK SL+ FS R TGI+A + GDEL +
Sbjct: 598 PVKEFKEDQFVFFATKKGLVKKTSLSAFSHPRNTGIVAAVVKDGDELMAAGLTDGSKEIL 657
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ G I S + +R + R G + L D++ S++I+ P+D S
Sbjct: 658 LVTRKGQSIRFSEEDVRPMGRTAAGVKGIELTSSDEVVSLEIL----------DPDDEAS 707
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
LL V+E G+GKR L +R G+I K + + +VG +
Sbjct: 708 ---------LLTVTELGYGKRTSLKEYRLQSRGGKGIIAMKLTNK----TGKLVGCARVC 754
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
D D++++L S +G + R++V+DI +Q R +GV L + KI S
Sbjct: 755 D---DDEIMLASTAGKIIRLRVKDIPVQGRATQGVRLFMMAGGEKIVS 799
>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
gi|429760744|ref|ZP_19293208.1| DNA gyrase, A subunit [Veillonella atypica KON]
gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
gi|429176759|gb|EKY18116.1| DNA gyrase, A subunit [Veillonella atypica KON]
Length = 821
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/840 (42%), Positives = 542/840 (64%), Gaps = 33/840 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITQEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +K K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-AKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + + +R + R G ++LK GD + ++ +
Sbjct: 667 TKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLES----------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G+GKR ++ + + G IG K F D+ V V E
Sbjct: 710 -DESEAQVFTISEEGYGKRNEADAYN---VQKRGGIGTKNFRINDKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I +E E++
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIESE 820
>gi|424780809|ref|ZP_18207679.1| DNA gyrase subunit A [Catellicoccus marimammalium M35/04/3]
gi|422842734|gb|EKU27183.1| DNA gyrase subunit A [Catellicoccus marimammalium M35/04/3]
Length = 821
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/833 (42%), Positives = 526/833 (63%), Gaps = 31/833 (3%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I V L EEM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG+ KP
Sbjct: 1 MTENIHNVNLSEEMKESFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVLPDKPH 60
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VGEV+GKFHPHGD+A+Y+S+VRMAQ FS R L+ GHGNFGSID D AAAMRYT
Sbjct: 61 KKSARIVGEVMGKFHPHGDSAIYESMVRMAQPFSYRQMLVDGHGNFGSIDGDGAAAMRYT 120
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ ML DI +DTV F+ N+D S+KEP +LPAR P LL+NG +GIAVGMATNI
Sbjct: 121 EARMSKIALEML-RDIKKDTVPFIDNYDGSEKEPEVLPARFPNLLVNGTTGIAVGMATNI 179
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D + L+ PE T+ +L+E +PGPDFPTGGL+MG GI AY TGRG I +
Sbjct: 180 PPHNLGEVIDAIHLLMEKPECTVADLMEVLPGPDFPTGGLVMGKSGIRKAYETGRGSIIL 239
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R +TE+E + K M +++ E+PY NK+ LVE++A+L K +DGI+ IRDES R GM
Sbjct: 240 RARTEIET-KASGKEM-IVVTELPYMVNKAKLVERMAQLAREKKIDGITSIRDESSREGM 297
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE+++ S+V+N+LY++T LQ+SF NM+ I +G PK + LK++L +LD + SV
Sbjct: 298 RIVIEIRKDTSASVVLNNLYKMTNLQTSFGFNMLAIENGIPKILNLKQILVDYLDHQESV 357
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR F + + R HI+EG+ + LD++D +I ++R + S+ A AL ++ L+E QA
Sbjct: 358 IRRRTEFDKKKAEARAHILEGLRIALDHIDAIIELIRNSSSDEEAKQALISDYSLTEIQA 417
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM LRRLT LER K E + L+ I L+++L+ R+ IL +IE E+ +++ RF
Sbjct: 418 QAILDMRLRRLTGLERAKIEKEYEELLVLIADLKDILAHRERILHIIEDELRDIQRRFDD 477
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
PR + L + L+D D+I +++++ ++ GY+KR+ F Q RG G +
Sbjct: 478 PRRTELLVGEVLSLEDEDLIEQEDIVITLTNNGYIKRLANTEFRTQRRGGRGVQGMSMHQ 537
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D M + C HD +L+F+++G V+ A+ Y+IPE +RNA G P++ +L L + E I SI
Sbjct: 538 DDDMQTILTCSTHDLLLFFTNKGKVFKAKGYEIPEYSRNAKGIPVINLLGLEEEESIQSI 597
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
I V Q L +T NG +K+ + F++IR+ G+ AIQL DEL V + D +
Sbjct: 598 IKVDLENPKQELFFVTKNGLVKRTAFAAFANIRSNGLKAIQLKDEDELIQVMVTSGSDQI 657
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A+ G I + +RS+ R G +RL++GD + + +PE
Sbjct: 658 MIATHEGYSINFMEEDVRSMGRTAAGVRGIRLREGDFVIGATTV----------SPE--- 704
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+L V+E+G+GKR +S++ P+ + G G K + V +L
Sbjct: 705 --------AQILVVTENGYGKRTEVSAY---PVKKRGGKGVKTLQKTERTGGLV---ALC 750
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
++D+ V++++ G + R V IS R A+GV ++RLE + + +I
Sbjct: 751 TVTDTDD-VLVMTNRGVMIRFAVDTISTIGRVAQGVRIIRLEEGTTVSTVDII 802
>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
12042]
gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
12042]
Length = 849
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/837 (41%), Positives = 535/837 (63%), Gaps = 35/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I + EM S++ YSMSV++ RALPDVRDG+KPVHRRIL+AM++LG+ + KP KK A
Sbjct: 11 IKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIVADKPHKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GK+HPHGD AVY+++VRMAQDFS RYPL+ GHGNFGS+D D AAAMRYTE R+
Sbjct: 71 RIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAAAMRYTEARM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S LL DI++DTV+++ N+D + EP +LP R P LL+NG +GIAVGMATNIPPHN
Sbjct: 131 SKIS-MELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE +D + A++ NP+ T+ EL+E Y+ GPDFPTGG I+G GI AY TGRG I +R K
Sbjct: 190 LGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETGRGSIMIRSK 249
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+VE + + K+ +I+ EIPY NK+ LVEKIA LV K ++GI+D+RDES+ G+RIV
Sbjct: 250 VKVEDMPNGKKQ--IIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESNMEGIRIV 307
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL++ +++N LYR+T+LQ+SF NM+ ++D P+Q+GLK+VL+ +LD + V R
Sbjct: 308 IELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDHQIDVTVR 367
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L + ++R HI+EG+ + LD++D +I ++R + S A L + F LSE QA AI
Sbjct: 368 RTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMENFGLSEIQAKAI 427
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM RRLT LER+K +E +LM QI L+++L++ +L++I E+ E+K +++ R
Sbjct: 428 LDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNHSRVLEIIRSELTEIKEKYNDKRR 487
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + DA+ + D D+IP +++++ ++ GYVKR+ +T+ LQNRG G + +D
Sbjct: 488 SEIIDAEI-DMQDEDLIPQEDVVITMTVNGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDI 546
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ F+ HD++L F+++G VY + Y++P +R + G P+V +L+L E++ +++PV
Sbjct: 547 VDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSKGIPIVNLLNLDKDEKVLAMVPV 606
Query: 683 S-EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E + +FL +T G +K+V + F +IR +G IAI L GDEL + T + +
Sbjct: 607 ERENSPAKFLFFVTAQGIVKRVPIEEFENIRQSGKIAINLREGDELISAKPTTGSSQILI 666
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A+ NG I + +R + R G + +G ++ M D E
Sbjct: 667 AAANGQAIRFNETDVRPMGRTATGVKGFNV-NGSRVIGM-------TTDFE--------- 709
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
G ++L V+E G+GK+ L +R NR G D+ + F A +
Sbjct: 710 -----GQYILSVTEKGYGKKSKLEDYRM--TNRGGKGVKTIQVTDKNGPLV---FLRAVN 759
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
G DE ++++ G V RI + +S+ +R +GV L+ +E + + + +++ +E +
Sbjct: 760 G--DEDCLIMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDD 814
>gi|392375984|ref|YP_003207817.1| DNA gyrase subunit A [Candidatus Methylomirabilis oxyfera]
gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [Candidatus
Methylomirabilis oxyfera]
Length = 841
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/861 (42%), Positives = 541/861 (62%), Gaps = 33/861 (3%)
Query: 76 VGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
+G N + P ++HEEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM ELGLS+
Sbjct: 8 IGLNRVGEVRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSA 67
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAA 195
+ +KK AR+VGEVLGK+HPHGD AVYD++VR+ QDFS+RYPLI G GNFGS+D D AA
Sbjct: 68 GRSYKKAARIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAA 127
Query: 196 MRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
MRYTE RL +++ ML DID++TV+ PNFDE+ +EP+LLPA LP LL+NG+SGIAVGM
Sbjct: 128 MRYTEVRLAKIAQEML-RDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGM 186
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNL E VD L L+ +P+AT L+ +PGPDFPTG I G GI DAY TGRG
Sbjct: 187 ATNIPPHNLSETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDAYLTGRG 246
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
I +R K VE S+ R +I+ E+PYQ NK+ L+E+IAELV ++ ++GI+D+RDESD
Sbjct: 247 LIRMRAKAFVE--KSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESD 304
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R GMRIVIELK+ ++N L++ TA+QS+F M+ +++GQPK + LKE L F++
Sbjct: 305 REGMRIVIELKKEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSHFIEH 364
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
R ++V RR RF L + +ER HI+EG + LD+LD VI ++R + S A A L ++F +S
Sbjct: 365 RKTIVIRRTRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQFGMS 424
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
+ QA AIL++ L+RLT LER+K DE + I + +L+S + Q+I++E++ +K
Sbjct: 425 QIQAQAILELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEALVCQIIKEELLAIKE 484
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+ R + + + + +++ D++ ++EM++ I+ GY+KR N + Q RG G +
Sbjct: 485 TYGDLRRTEILEETT-EIELEDMLADEEMVIPITHGGYIKRSNLNAYRSQRRGGKGMTGM 543
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
+ D + V H H+L F+++G V+ + Y +P+ A G L L L GE+
Sbjct: 544 ATKEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKGKALANFLQLGVGEQ 603
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
IT++IP+ +F D++L+M T G +KK LN + + R GIIAI L GDEL VR
Sbjct: 604 ITTVIPIRQFEVDRYLLMATRRGIVKKTELNAYGNPRAGGIIAITLDGGDELIAVRLTKG 663
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DD + + ++ GM I D +RS R RG + L+ GD++ +++
Sbjct: 664 DDEILLGTRQGMAIRFKEDEVRSAGRAARGVKGISLEGGDEVVGAEVV------------ 711
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ G +L V+E G+GKR +R G+I + A DR VG
Sbjct: 712 ---------AQGAAVLTVTERGYGKRTDPEEYRLQSRGGKGIINIR--ATDRNGP--AVG 758
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS-LISV 914
L + G +Q++++SQ G + R++V +IS+ R +GV L LE + ++ + + L+S
Sbjct: 759 VMLVQSG---DQIMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSD 815
Query: 915 TEPETDLFLPSTSDKLATESG 935
E + P + + E+G
Sbjct: 816 DEGVEEADGPQSPPEPGGEAG 836
>gi|422017616|ref|ZP_16364181.1| DNA gyrase subunit A [Providencia alcalifaciens Dmel2]
gi|414105766|gb|EKT67323.1| DNA gyrase subunit A [Providencia alcalifaciens Dmel2]
Length = 867
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/875 (40%), Positives = 551/875 (62%), Gaps = 67/875 (7%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP+
Sbjct: 4 IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ M LAD++++TV+FVPN+D +++ P ++P ++P LL+NG+SGIAVGMATNI
Sbjct: 124 EIRMAKIAHEM-LADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE+++ A I + + +++ L+E++PGPDFPT +I G GI+DAYRTGRG++ +
Sbjct: 183 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + EVE +D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ GM
Sbjct: 243 RARAEVE-VDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE+KR A +V+N+LY LT LQ SF NMV + GQPK + LK+++ AF+ R V
Sbjct: 302 RIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREV 361
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL----------- 488
V RR F+L + ++R HI+E + V L N+D +I ++R+AP+ + A A L
Sbjct: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVA 421
Query: 489 -----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
+ ++ L+E+QA AILD+ L++LT LE +K ++E + L
Sbjct: 422 AMLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYREL 481
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEML 585
++QI +L +L S + ++++I +E+ +++ ++ PR + + + ++ ++ D+I ++++
Sbjct: 482 LKQIEELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITE-NTADINIEDLINQEDVV 540
Query: 586 LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +Y
Sbjct: 541 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLY 600
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705
+ Y++PE +R A G P+V +L L ERIT+I+PV E+ ++ M T +G +KK L
Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYYVFMATASGTVKKTPL 660
Query: 706 NLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765
FS R+ GIIA+ L GDEL V + V + S G V+ + D +R++ R G
Sbjct: 661 QDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAMGRTATG 720
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLS 825
++L D DK+ S+ IIP + H +L V+E+G GKR +
Sbjct: 721 VRGIKLMDNDKVVSL-IIPRG----------EGH----------ILTVTENGFGKRTEEA 759
Query: 826 SFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885
+ G+I K S + VVG ED +Q+++++ +GT+ R +V ++
Sbjct: 760 EYPTKSRATQGVISIKVSERNG----HVVGAIQVED---TDQIMMITDAGTLVRTRVSEV 812
Query: 886 SIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
S+ R +GV L+R K+ L V E E D
Sbjct: 813 SVVGRNTQGVTLIRTAEDEKV--VGLQRVAETEDD 845
>gi|405754086|ref|YP_006677550.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2540]
gi|404223286|emb|CBY74648.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2540]
Length = 842
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/835 (42%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL HNPE T+++L+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|406915510|gb|EKD54585.1| hypothetical protein ACD_60C00067G0003 [uncultured bacterium]
Length = 843
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/850 (42%), Positives = 534/850 (62%), Gaps = 61/850 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I V L +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHELG K
Sbjct: 4 SIAKEIQKVSLEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGNDWNKA 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FS+RY L+ G GNFGSID D AAAMRY
Sbjct: 64 HKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSIDGDEAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ A LLAD++++TV+FVPN+DES+ P +LPA+LP LL+NG+SGIAVGMATN
Sbjct: 124 TEVRMSRMAHA-LLADLEKNTVDFVPNYDESETSPVVLPAQLPNLLINGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ A+I N + T++E++ ++PGPDFPT I G GI AYRTGRGRI+
Sbjct: 183 IPPHNLTEVVNACIAMIDNSDITIEEIMRHIPGPDFPTAATIHGRAGIHLAYRTGRGRIS 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR KT++E D KS + +++ E+PYQ NK+ LVE+IAELV+ K L+GI+ +RDESD+ G
Sbjct: 243 VRAKTQIE-TDEKSGKEKIVVTELPYQINKARLVERIAELVKEKKLEGITALRDESDKQG 301
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VIEL+RG + +++N+L+ T LQS + NMV +LDGQPK + +K++L+AFL R
Sbjct: 302 MRVVIELRRGENSDVILNNLFVHTQLQSVYGMNMVALLDGQPKVLNIKQILEAFLRHRRE 361
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F L + +ER HI+EG+ + L N+D VI ++++A + A L
Sbjct: 362 VVTRRTIFDLHKARERAHILEGLAIALANIDEVIALIKKAKDPADAKTQLLSRAWHPADV 421
Query: 489 ----------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
+D + S +Q +ILDM L RLT LE+ K + E K L I+ L
Sbjct: 422 ITILSRISEGAPYGLAQDGYHFSPEQVQSILDMRLHRLTGLEQNKILSEHKELQLLIVDL 481
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
++L + K ++Q+I E++ ++ +F R + + + + G D++P +++++ +S +G
Sbjct: 482 NDILINSKRLMQVIRDELLSIQQQFGDERRTQIIE-NEGDFCLEDLLPEEDVVVTLSHEG 540
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
Y K + Q+RG GKS ++ D + +V +HD +L FS+ G VY + Y++
Sbjct: 541 YAKSQPVALYQAQHRGGKGKSATNVKEEDFIERVLVANSHDTILCFSNHGKVYWLKVYQL 600
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR 712
P+ +RN+ G P+V +L L++GE+I +I+PV ++ DQF+ M T G +KKV+L FS R
Sbjct: 601 PQASRNSRGKPIVNLLPLAEGEKINAILPVRDYRKDQFVFMATAKGTVKKVALTEFSRPR 660
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
+ GIIA++L D+L V V + + G VIL S + +RS+ R RG ++L+
Sbjct: 661 SNGIIALELADNDKLIGVDITNGQQEVMLFTNAGKVILFSEEDVRSMGRTARGVRGVKLQ 720
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
+ S+ ++ H N +L +++G+GKR + +R
Sbjct: 721 KEQYVISLIVV---------------HPNGD------ILTATKNGYGKRTAIEEYRSTGR 759
Query: 833 NRVGLIGYKFSAE--DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I + + D +AA V ++V+L+S GT+ R+ V +IS+ R
Sbjct: 760 GGQGVISIQVTERNGDVIAATQV---------NPVDEVMLISNKGTLVRVPVAEISLVGR 810
Query: 891 YARGVILMRL 900
+GV L+ L
Sbjct: 811 NTQGVRLINL 820
>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
30120]
gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
30120]
Length = 867
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/875 (40%), Positives = 551/875 (62%), Gaps = 67/875 (7%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP+
Sbjct: 4 IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GK+HPHGD+AVY+++VR+AQ FS+RY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ M LAD++++TV+FVPN+D +++ P ++P ++P LL+NG+SGIAVGMATNI
Sbjct: 124 EIRMAKIAHEM-LADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE+++ A I + + +++ L+E++PGPDFPT +I G GI+DAYRTGRG++ +
Sbjct: 183 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + EVE +D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ GM
Sbjct: 243 RARAEVE-VDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGM 301
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE+KR A +V+N+LY LT LQ SF NMV + GQPK + LK+++ AF+ R V
Sbjct: 302 RIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREV 361
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL----------- 488
V RR F+L + ++R HI+E + V L N+D +I ++R+AP+ + A A L
Sbjct: 362 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVA 421
Query: 489 -----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
+ ++ L+E+QA AILD+ L++LT LE +K ++E + L
Sbjct: 422 AMLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYREL 481
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEML 585
++QI +L +L S + ++++I +E+ +++ ++ PR + + + ++ ++ D+I ++++
Sbjct: 482 LKQIEELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITE-NTADINIEDLINQEDVV 540
Query: 586 LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +Y
Sbjct: 541 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLY 600
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705
+ Y++PE +R A G P+V +L L ERIT+I+PV E+ ++ M T +G +KK L
Sbjct: 601 WMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYYVFMATASGTVKKTPL 660
Query: 706 NLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765
FS R+ GIIA+ L GDEL V + V + S G V+ + D +R++ R G
Sbjct: 661 QDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAMGRTATG 720
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLS 825
++L D DK+ S+ IIP + H +L V+E+G GKR +
Sbjct: 721 VRGIKLMDNDKVVSL-IIPRG----------EGH----------ILTVTENGFGKRTEEA 759
Query: 826 SFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885
+ G+I K S + VVG ED +Q+++++ +GT+ R +V ++
Sbjct: 760 EYPTKSRATQGVISIKVSERNG----HVVGAIQVED---TDQIMMITDAGTLVRTRVSEV 812
Query: 886 SIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
S+ R +GV L+R K+ L V E E D
Sbjct: 813 SVVGRNTQGVTLIRTAEDEKV--VGLQRVAETEDD 845
>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
Length = 824
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/839 (41%), Positives = 528/839 (62%), Gaps = 38/839 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV + +EM SY+ Y+MSV++GRALPD+RDGLKPVHRRIL+ MHE+GL+ +P K A
Sbjct: 11 MIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
++ G+V+GK+HPHGD+A+YDSLVRMAQ F++RYPL+ G GNFGS+D DP AAMRYTE RL
Sbjct: 71 KITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEARL 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ A LL DID++TV+F PN+D+++ EP +LP R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 SKFATA-LLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+++ LI +P A L +++E++ GPDFPTGG I+G GILDA+ GRG++ +R K
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGRGQLKLRAKA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + R +I+ EIPYQ NKS L+E + LV K L+GI DIRDESDR GMRIV
Sbjct: 250 AIEKMGKD--REQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVF 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRG +++N+LY+ T LQ F M+ I++GQP+++GL ++++ F+D R VV RR
Sbjct: 308 ELKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHRIEVVRRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++L + ++R HI+ G LD+LD VIR++R + S A +L F+ S+KQA AI+
Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
++ L+RLT +ER+K +DE + +I + E+L S K + LI +E+ E++ + R +
Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDERRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ + D+G++ D++ +++ + ++ GY+KR +T+ Q RG G+ R D +
Sbjct: 488 QIIE-DTGEIRLEDLVAVEDVAITVTRGGYLKRTSVDTYRRQTRGGKGRIGMGTRAEDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
IV H ++L F+ RG VY +AY+IP+ T G L +++L E + + V
Sbjct: 547 ERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGKGKHLTNLINLQGDEEAKAFLSVK 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F +Q++VM+T +G IKK L F + + GIIA+ L GDEL + D+ + + S
Sbjct: 607 DFVANQYIVMVTKHGVIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYIFLGS 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G I + +R++ R RG AM L DGD + M+++ KD
Sbjct: 667 HEGQAIRFREEDVRAMGRQARGVRAMSLADGDYLVGMEVV----EKD------------- 709
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDG 862
+L ++E+G+GKR PL +R G+I K + + R+ + V
Sbjct: 710 ----GLILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTTNKTGRVVGILSV-------- 757
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ D ++++VSQ+G + RI+ I R +GV L+ LE K+ +AS+I PE+D+
Sbjct: 758 KEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVI----PESDV 812
>gi|407796858|ref|ZP_11143809.1| DNA gyrase subunit A [Salimicrobium sp. MJ3]
gi|407018756|gb|EKE31477.1| DNA gyrase subunit A [Salimicrobium sp. MJ3]
Length = 831
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/845 (41%), Positives = 546/845 (64%), Gaps = 40/845 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S R+ + + EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM++LG+++ K +K
Sbjct: 7 SSRVHEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGITADKAYK 66
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 67 KSARIVGDVIGKYHPHGDSAVYEAMVRMAQDFSFRYELVDGHGNFGSVDGDSAAAMRYTE 126
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S ML DI +DT+++ N+D ++KEP++LPAR P L+NG +GIAVGMATN+P
Sbjct: 127 ARMSKISMEML-RDIQKDTIDYQENYDGTEKEPAVLPARFPNFLVNGGAGIAVGMATNVP 185
Query: 261 PHNLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PH+LGE++D + AL + T+QEL+E Y+ GPDFPT G I+G GI AY TG+G I +
Sbjct: 186 PHHLGEVIDGVLALSRDRNITVQELMENYIFGPDFPTSGQILGLSGIRKAYETGKGSILI 245
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E + + + +I+ E+PYQ NK+ LVEKIAEL +K +DGI+D+RDESDR GM
Sbjct: 246 RSKVEIE--EKSNGKSQIIVTELPYQVNKARLVEKIAELARDKKIDGITDLRDESDRDGM 303
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIEL++ + ++++N+LY++TALQ+SF NM+ ++DG+P+ + LK+ L+ +L+ + V
Sbjct: 304 RIVIELRKDVNANVLLNNLYKMTALQTSFGINMLALVDGRPQVLNLKQALEHYLEHQKVV 363
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR ++L + + R HI+EG+ V LD+LD VI ++R++ + A L F+LSEKQA
Sbjct: 364 IRRRTAYELKKAEARAHILEGLKVALDHLDEVITLIRQSQTTEVAREELMTRFELSEKQA 423
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L+RLT LER+K E L+++I +L+ +L+ + +L++I +E++ELK RFS
Sbjct: 424 QAILDMRLQRLTGLEREKIDSEYDDLVKKIEELKAILADEERVLEIIREELLELKERFSD 483
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + ++D D+IP + +++ ++ +GYVKR+ +T+ Q RG G+ V +
Sbjct: 484 ERRTEIIMGGMEMIEDEDLIPEETIVVTLTNQGYVKRLPADTYRAQRRG--GRGVQGMGT 541
Query: 620 NDAMSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
ND DF+ H VL+FS++G VY + Y+IPE +R A G P++ +L++ + E
Sbjct: 542 ND--EDFVEHLLSTSTHSTVLFFSNKGKVYKLKGYEIPEFSRTAKGLPIINLLNIENDEW 599
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
I +I V +F D + V T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 600 INDVIAVDKFEEDWYFVFTTRHGVTKRTSLSKFANIRKGGLIALSLRENDELISVRMTDG 659
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + +A++NG +I IRS+ R G + L+ D++ SM+++
Sbjct: 660 EKDIMIATRNGYLIRFPETQIRSMGRTAAGVKGISLRSDDRVVSMELV------------ 707
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
ED +L V++ G GKR P S +R NR G + +R V
Sbjct: 708 EDDRE---------ILTVTDKGFGKRTPASEYR--ITNRGGKGILTCNLTERNGKVVS-- 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
+ A GE D +++++ SG + R+ +S R +GV L+RL+ ++ + + +
Sbjct: 755 -TKAVTGEED--LMIMTASGVLIRMAAGSVSRTGRNTQGVRLIRLQEGEEVSTVARLEAM 811
Query: 916 EPETD 920
+ E +
Sbjct: 812 KEEKE 816
Score = 39.3 bits (90), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 22/233 (9%)
Query: 576 IDIIPNDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634
+D D + + G KR + F N++ G I S LR ND + +
Sbjct: 606 VDKFEEDWYFVFTTRHGVTKRTSLSKFANIRKGGLIALS---LRENDELISVRMTDGEKD 662
Query: 635 VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVML 694
++ + G + +I R AAG V+ +SL +R+ S+ V + D+ ++ +
Sbjct: 663 IMIATRNGYLIRFPETQIRSMGRTAAG---VKGISLRSDDRVVSMELVED---DREILTV 716
Query: 695 TMNGYIKKVSLNLFSSIRTT-----GIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMV 748
T G+ K+ S R T GI+ L + ++ + T ++ + + + +G++
Sbjct: 717 TDKGFGKRTPA---SEYRITNRGGKGILTCNLTERNGKVVSTKAVTGEEDLMIMTASGVL 773
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDK---MASMDIIPAALHKDLERTPEDS 798
I + + RNT+G +RL++G++ +A ++ + +D E EDS
Sbjct: 774 IRMAAGSVSRTGRNTQGVRLIRLQEGEEVSTVARLEAMKEEKEEDTEGLSEDS 826
>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
gi|384359325|ref|YP_006197177.1| DNA gyrase subunit A [Clostridium difficile BI1]
gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
Length = 808
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/834 (42%), Positives = 536/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++FKL+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
gi|423082997|ref|ZP_17071579.1| DNA gyrase, A subunit [Clostridium difficile 002-P50-2011]
gi|423088742|ref|ZP_17077116.1| DNA gyrase, A subunit [Clostridium difficile 70-100-2010]
gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile 630]
gi|357547076|gb|EHJ28975.1| DNA gyrase, A subunit [Clostridium difficile 002-P50-2011]
gi|357559148|gb|EHJ40608.1| DNA gyrase, A subunit [Clostridium difficile 70-100-2010]
Length = 808
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/834 (42%), Positives = 536/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++FKL+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
Length = 932
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/825 (41%), Positives = 531/825 (64%), Gaps = 32/825 (3%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
L +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E G + +P K AR VG+
Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
V+GK+HPHGD+AVYD++VR+AQ FS+R PL+ GHGNFGSID D AAAMRYTE RL+ ++
Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVA- 209
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
LL D+D++TV+F PN+DES +EP++LPAR P LL+NG+ GIAVGMATNIPPHNLGE +
Sbjct: 210 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETI 269
Query: 269 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
D C ++ NP+ T +EL++ +PGPDFPTGG+IMG GI DAY TGRG +TVR K +VE
Sbjct: 270 DATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVE-- 327
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K+ R +++ EIPYQ N+ L+EK+ ELV K L IS+I D +DR G+ I+I+LK+
Sbjct: 328 EGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKD 387
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
A P +V+N LY+ T LQ F M+ ++DG P+ + LKE+L ++ + V+ RR R++L
Sbjct: 388 AIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYEL 447
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
++ +ER HI+EG+++ LDN+D +I I+R + ++ A+ + + F L++KQ AIL+M LR
Sbjct: 448 AKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILEMRLR 507
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RLT LE +K DE K L+E+I + +LS + + ++I++E++E+K +F +PR ++L +A
Sbjct: 508 RLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSPRRTLLSEA 567
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+ LD D+I + M++ +++ GYVKR+ T+ Q RG G S L+ ND + V
Sbjct: 568 -AKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNLKDNDYVEHLFV 626
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
H ++L+FS +G VY + Y++PE +R+A GT +V +L L GE I+++I +F D
Sbjct: 627 ASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSD 686
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
++L+ T +G +KK S++L+ R G+IAI L D L V+ + V M S G
Sbjct: 687 EYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKA 746
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I+ +R++ R+T G + M++ P A +E D+
Sbjct: 747 IMWDEGEVRAMGRDTMG-----------VRGMNVPPIAKVLGMEIAQPDTD--------- 786
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
L ++E G+GKR P++ + + G+ + + L AV + +AE D+++
Sbjct: 787 -LFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKI---VAE----DDEI 838
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++S+ G R V IS R +GV +M+ ++ + ++ S
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAISS 883
>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
Length = 843
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/826 (44%), Positives = 526/826 (63%), Gaps = 38/826 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++ E + GSY+ YSMSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ R +KK AR+V
Sbjct: 14 VKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAAYKKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD+LVRMAQDFS+R PL+ G GNFGSID D AAAMRYTE R+ L
Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTEARMTKL 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LL DID+DTV+FVPN+D+S +EP +LP+R+P LLLNG++GIAVGMATNIPPH L E
Sbjct: 134 AEE-LLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNIPPHRLDE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L+D + NPEA ++EL++ + GPDFPTGG+I G GI+DAY TGRGRI VR KT +E
Sbjct: 193 LIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGRGRIKVRAKTHIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
R ++I E+PYQ NKS L+E IA+LV +K ++GIS+IRDESDR G+R+VIELK
Sbjct: 253 ---QHKNREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRVVIELK 309
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A IV+N+L++ T +Q++F M+ I++ +PK L E+L F++ R +V+ RR F
Sbjct: 310 RDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHRKTVIIRRTIF 369
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + + R HI+EG+ + +DN+D VI+I+R + +S A A L F LSE QA AIL+M
Sbjct: 370 DLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSRFDLSEIQARAILEMR 429
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LE +K E L + I LE +L S I ++I++E++E+K FS R + +
Sbjct: 430 LRRLTGLEIEKIESELAELRKTIEYLESILKSETMIEEIIKKELLEVKEAFSDERRTEIV 489
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D +D D+IPN+ M++ I+ +GY+KR+ + Q RG GK+ +D + F
Sbjct: 490 -DDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRRGGKGKTAVTTYEDDFIERF 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ HD +++ +D+G +Y + Y+IPE +R A G +V +++L E+I +IIP +F
Sbjct: 549 FISNTHDTLMFVTDKGQLYWLKVYRIPEGSRTAKGKAVVNLINLDKDEKIKAIIPTQDFN 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND-DLVAMASQN 745
D+ LV T NG +K+ +L+ +S+IR+ G+ AI L DEL + D + + ++
Sbjct: 609 EDKSLVFFTRNGIVKRTNLSEYSNIRSVGVRAINLDENDELIDAKIIKPDTKWLFVVTKK 668
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
GM I +R + R RG A++ K DGD + I ED
Sbjct: 669 GMCIRFPVSDVREIGRVARGVTAIKFKIDGDYVCGATTI---------ENEEDE------ 713
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAEDG 862
+L VSE G GKR P S +R+ G+I K + + D + VFV
Sbjct: 714 -----ILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTPKTGDVVGVVFV--------- 759
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
E D+ ++ ++ +G + R+ ++ I R GV ++ +E ++ S
Sbjct: 760 EEDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVS 805
>gi|420514322|ref|ZP_15012795.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-3b]
gi|393158785|gb|EJC59045.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-3b]
Length = 828
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/822 (43%), Positives = 541/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKTGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LD++D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDSIDEIVRLIKTSPSPEAAKNALMECFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I S + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFSLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D + D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDEKLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
angustum S14]
gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
Length = 887
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/889 (40%), Positives = 557/889 (62%), Gaps = 79/889 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I P+ + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE+++ A I++ + T+ +L+EY+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E+ K+ + +++ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 MRAKAEIEV--EKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F++ R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR ++L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 360 VVTRRTIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+++ L+E+QA AILD+ L +LT LE +K ++E K
Sbjct: 420 AAMLERAGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKA 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+++I +L +LSS + ++++I +E+ +K +F+ R + + A S +D D+I +++
Sbjct: 480 LLDEIAELMYILSSSERLMEVIREELELVKEQFNDERRTEITAA-SHDIDMEDLITQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GK+ +++ D + +V HD +L FS RG +
Sbjct: 539 VVTLSHEGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRM 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V IL L + ERIT+I+PV E+ D+F+ M T +G +KK
Sbjct: 599 YWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVIL-----------SSC 753
L FS R+ GIIA+ L GD L V D + + S G V+ ++
Sbjct: 659 LTDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAK 718
Query: 754 DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFV 813
+R + R G ++L +GDK+ S+ I+P H D + +L V
Sbjct: 719 GGVRGMGRTAAGVRGIKLAEGDKVISL-IVP---HNDGD-----------------VLTV 757
Query: 814 SESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
+E+G+GKR L+ + G++ K S + VVG AEDG ++ ++++
Sbjct: 758 TENGYGKRTELAEYPAKSRATQGVVSIKVSERNGR----VVGAVQAEDG---DEFMMITN 810
Query: 874 SGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
+GT+ R +V ++S R +GV L+R K+ L + EPE +L
Sbjct: 811 AGTLVRTRVSEVSRVGRNTQGVTLIRTTEGEKV--VGLQRIDEPEEELI 857
>gi|330808287|ref|YP_004352749.1| DNA gyrase subunit A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696077|ref|ZP_17670567.1| DNA gyrase, A subunit [Pseudomonas fluorescens Q8r1-96]
gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|388003589|gb|EIK64916.1| DNA gyrase, A subunit [Pseudomonas fluorescens Q8r1-96]
Length = 887
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/857 (42%), Positives = 532/857 (62%), Gaps = 68/857 (7%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I+PV + +E+ SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAM ELG KP+
Sbjct: 4 LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ L+ LLAD+ ++TV++VPN+D ++ P+++P R+P LL+NG+SGIAVGMATNI
Sbjct: 124 EVRMTKLAHE-LLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D ALI NPE T+ EL++Y+PGPDFPT +I G GI++AYRTGRGRI +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R ++ VE +D R ++I E+PYQ NK+ L+EKIAELV+ K L+GI+++RDESD+ GM
Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIEL+RG P +++N+LY T LQS F N+V ++DG+P+ + LK++L+AF+ R V
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL----------- 488
V RR F+L + +ER HI+EG V L N+D VI +++ +P+ S A AL
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422
Query: 489 -----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
+ ++ LS +QA AIL++ L RLT LE +K + E + +
Sbjct: 423 AMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI--DIIPNDE 583
+ QI +L +L+S ++++I +E+ ++ + R + + DA +LD D+IP +E
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDA---RLDLTLGDMIPEEE 539
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
++ IS GY K + Q RG GKS ++ D ++ +V +H +L FS +G
Sbjct: 540 RVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGK 599
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
VY + Y+IPE +R A G PLV +L L DGE IT+++PV E+ ++ M T NG +KK
Sbjct: 600 VYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGTVKKT 659
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
L FS R+ G+IA++L GD L + V + S G V +R++ R
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAMGRTA 719
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG MRL +G K+ SM I PE+ G +L S G+GKR
Sbjct: 720 RGVRGMRLPEGQKLISMLI------------PEE---------GSQILTASARGYGKRTA 758
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+S F + G+I + DR +VG DG E+++L+S GT+ R +V
Sbjct: 759 ISEFPEYKRGGQGVIA--MVSNDRNGR--LVGAVQVLDG---EEIMLISDQGTLVRTRVA 811
Query: 884 DISIQARYARGVILMRL 900
++S R +GV L++L
Sbjct: 812 EVSSLGRNTQGVTLIKL 828
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 38/236 (16%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ +V ++ GY K L + + R G A + D + + + + + S
Sbjct: 538 EERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSK 597
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRL---KDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G V I SR RG + L DG+ + +M +P +
Sbjct: 598 GKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTM--LPVEEY-------------- 641
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+ G ++ + +G K+ PL SF + VGLI + D L + + DG
Sbjct: 642 --TEGHYIFMATANGTVKKTPLESFSRQ--RSVGLIALELDEGDVLISAAIT------DG 691
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E +V+L S G V R K D+ R ARGV MRL + LIS+ PE
Sbjct: 692 E--REVMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLP-----EGQKLISMLIPE 740
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 592 GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651
G VK+ +F+ Q ++G +L D + + V+ FSD G V +
Sbjct: 654 GTVKKTPLESFSRQR--SVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESD 711
Query: 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSI 711
+ R A G V+ + L +G+++ S++ E G Q L + GY K+ +++ F
Sbjct: 712 VRAMGRTARG---VRGMRLPEGQKLISMLIPEE--GSQILTA-SARGYGKRTAISEFPEY 765
Query: 712 RTTGIIAIQLVPGDE----LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSV 767
+ G I +V D + V+ ++++ ++ Q G ++ + + SL RNT+G
Sbjct: 766 KRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQ-GTLVRTRVAEVSSLGRNTQGVT 824
Query: 768 AMRLKDGDKMASMD 781
++L + + ++
Sbjct: 825 LIKLASDETLVGLE 838
>gi|344924256|ref|ZP_08777717.1| DNA gyrase subunit A [Candidatus Odyssella thessalonicensis L13]
Length = 916
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/886 (40%), Positives = 550/886 (62%), Gaps = 68/886 (7%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM E +P++K A
Sbjct: 10 IKPVAIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKESNNEYNRPYRKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R VG+V+GK+HPHG+ A+YD++VRMAQDFSLR PLI G GNFGS+D DPAAA RYTE RL
Sbjct: 70 RTVGDVMGKYHPHGNMAIYDAMVRMAQDFSLRVPLIDGQGNFGSMDGDPAAAERYTEARL 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ LL DID+DTV++ PN+D+S EP +LPA+ P +L+NG +GIAVGMATNIPPHN
Sbjct: 130 SRAAHE-LLEDIDRDTVDYQPNYDDSTVEPKVLPAKFPNILVNGGNGIAVGMATNIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D CALI NP ++EL++YMPGPDFPTGG+I+G GIL+A+RTGRG I +RGKT
Sbjct: 189 LGEVIDACCALIENPALEVEELMQYMPGPDFPTGGIIVGRAGILEAFRTGRGSIVMRGKT 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E + + ++ +II EIPYQ NK+ LVE+IAE+V+ K ++GISD+RDESDR G+R+VI
Sbjct: 249 HTETV--RGEKEAIIIDEIPYQVNKARLVERIAEIVKEKIVEGISDLRDESDRDGVRVVI 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T+LQ+SF NM+ + G+P+QM +K++L AFL+FR V+ RR
Sbjct: 307 ELKRDAVADVVLNQLYRFTSLQTSFGVNMLALNHGRPEQMSIKQILTAFLEFREEVILRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
RF+L++ +E+ H+ G+ + + N++ +I ++R+A S A L
Sbjct: 367 TRFELAKAREKAHLFVGLAIAVANIEPIIELIRQASDRSIAKEQLMSRDWPAQAVAPLLA 426
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
++ ++L++ QA AILD+ L RLT LER+K ++ L QI L ++L
Sbjct: 427 IVDEPGSFVEGQNAYRLTDAQAQAILDLRLHRLTGLEREKIANDLNELAVQIKDLLDILG 486
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
R +L ++ E++ +K +F +PR + +E+ DS +D D+I +EM++ +S +GY+KR+
Sbjct: 487 DRPRVLSIMRDEMLAVKEQFKSPRRTEIEEGDS-SVDVEDLIQREEMVVTVSMEGYIKRV 545
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+T+ Q RG G+S + D + D V H+ VL+F+ +GIV++ + Y++P +
Sbjct: 546 PLSTYRAQRRGGKGRSGMTTKEEDVVQDLFVANTHNPVLFFTTKGIVFNLKVYRLPLGSP 605
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQ---FLVMLTMNGYIKKVSLNLFSSIRTT 714
+ G P+V +L LS E+I++++ + E D ++ T +G +++ L+ F +IR+
Sbjct: 606 TSKGRPMVNLLPLSQDEKISTVLVLPEEGADWENMHVMFATSHGSVRRNKLSDFMNIRSN 665
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS-LSRNTRGSVAMRLKD 773
G IA++L +EL V+ CT D V +++ G I + D +R + R++ G ++L +
Sbjct: 666 GKIAMKLDESEELIAVKLCTEQDDVMLSTSAGKCIRFNVDEVRVFVGRDSTGVRGIKLAE 725
Query: 774 GDKMASMDIIPAA----------------LHKDLERTPEDSHSNVKGSSGP--------- 808
GD + SM I+ A L + E + + +GS P
Sbjct: 726 GDSVISMTILAQAEVSTEERDIYLRQASKLRQLDEEEMDADGKDAEGSLSPERFKDLAEA 785
Query: 809 --WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
++L ++E+G GKR +R VG+ +A + V F + E +
Sbjct: 786 EQFILTLTENGFGKRSSAFEYRTTGRGGVGIDSIIVNARN---GGVVASFPVRE----QD 838
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
Q++LV+ +G + R + D+ I R +GV + R+ ++ S S I
Sbjct: 839 QIMLVTNAGKLIRCPIHDVRIAGRRTQGVTIFRIADGERVVSVSHI 884
>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
Length = 812
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/823 (42%), Positives = 540/823 (65%), Gaps = 36/823 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ +EM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M E G++ KP++K
Sbjct: 6 KIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VY ++V+MAQDF+ R L+ G GNFG++D D AAMRYTE R
Sbjct: 66 ARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRYTEAR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DID++TV+F PNFDES +EP +LPA+ P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSRLA-TELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D I N + T ++L+E++ GPDFPTG +I+G GI +AYRTGRG++ VR +
Sbjct: 185 NLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRVRAR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E L K K+ ++I EIP+Q NKS LVE+IA+LV +K ++GISD+RDE++R G+R+V
Sbjct: 245 AEIEEL-PKGKQQ-IVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRVV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR + +I++N+LY+ + L+ +FS + I+D PK + LK+ L+ ++D + V+ R
Sbjct: 303 IELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVITR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L + + R HI+EG+ + LDN+DRVI I+R + + A L +EF LS+ QA AI
Sbjct: 363 RTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEEFALSDIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K +E K LME+I LE +L+ + +I+ E++ +K++++ PR
Sbjct: 423 LDMRLQRLTGLERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADPRR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ ++ A+ G++ D+ +E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIKPAE-GEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
++D I H +L+F++RG VY AY++PE R + GT +V +L L+ GE+I I
Sbjct: 542 VTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKIARTISF 601
Query: 683 SEFAGD----QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+ + + ++L+ T +G +KK ++ F +I +G+IAI L GDEL V ++
Sbjct: 602 NTDSKENEDLKYLLFATKSGIVKKTPISDFKNINKSGLIAINLKDGDELIGVNRTNGEED 661
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NGM I + + +RS+ R G + L GD + SMD+I
Sbjct: 662 IILVTENGMSIRFNENDVRSMGRTATGVKGITLSKGDHVVSMDLI--------------- 706
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
S+G LL VSE G GKR +R P R G ++ + +VG +L
Sbjct: 707 ------SNGTDLLVVSEKGFGKRTETEEYR--PQIRAGKGIKTYNINSKTGK--LVGATL 756
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
++ D+++++++ +G + RI+V +ISI R GV LM+ +
Sbjct: 757 VDE---DDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTD 796
>gi|444920933|ref|ZP_21240772.1| DNA gyrase subunit A [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508153|gb|ELV08326.1| DNA gyrase subunit A [Wohlfahrtiimonas chitiniclastica SH04]
Length = 869
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/865 (42%), Positives = 539/865 (62%), Gaps = 72/865 (8%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ IV V L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRRIL +M++ KP+K
Sbjct: 5 AKEIVSVNLEEEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILHSMNQTHNDWNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+A+YDS+VRMAQ FS+RY L+ G GNFGS+D D AAMRYTE
Sbjct: 65 KSARIVGDVMGKYHPHGDSAIYDSIVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LL DID++TV+F+PN+D S+ EPS+LP ++P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMSRIAHT-LLQDIDKETVDFIPNYDGSEVEPSVLPTQIPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E ++ ALI NPE T+ EL+E++P PDFPT G+I G G+ +AY TGRGR+ +R
Sbjct: 184 PHNLTETINACVALIQNPEVTIDELMEHIPAPDFPTAGIINGTKGVREAYHTGRGRVVMR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGIS--DIRDESDRSG 378
+ ++E ++ K R +++ E+PYQ NK+ L+EKI EL +K ++GI+ +RDESD+ G
Sbjct: 244 ARCDIE-INEKRNREVIVVSELPYQVNKARLIEKIVELHRDKIIEGIAPDGLRDESDKDG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKRG +V+N LY+ TALQSSFS NMV I GQPK + LK+VL+AF+ R
Sbjct: 303 MRIVIELKRGESGMVVLNQLYKHTALQSSFSINMVAIDQGQPKLLNLKQVLEAFIAHRRE 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------- 491
V+ RR + L + +ER H++EG+ V L N+D +I ++R + +TA + D+
Sbjct: 363 VITRRTIYDLRKARERAHLLEGLTVALVNIDEMIELIRSSKDGATAKVKMLDKIWTAGDV 422
Query: 492 ----------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESK 523
++L+E QA AILDM L+RLT LE+ K DE +
Sbjct: 423 IPMLERAAELNEAAALDQNGEYGLIDGGYRLTEVQAQAILDMRLQRLTGLEQDKIHDEYQ 482
Query: 524 TLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDE 583
L+E I E+L + + +++ +E+ +++ F R + + + + +D +D+I +++
Sbjct: 483 ILLEAIAAFIEILVNPDRLKEVVLEELEKVRADFHDARRTEIRPS-AEDIDILDLIADEQ 541
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
+++ +S +GY+K + + Q RG GKS K++ D + + I H ++ FS G
Sbjct: 542 VVVTLSHRGYIKYQQLGEYQAQKRGGRGKSAAKVKDEDHVVNLITTSTHAQLMCFSSIGR 601
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
VY R Y++PE R ++G P+V +L LS+GERITSI+PV E++ + F+VM T +G IKK
Sbjct: 602 VYWLRTYELPEAGRGSSGRPIVNMLPLSEGERITSILPVEEYSAELFIVMATRHGVIKKT 661
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
SL+ F+S R+TG+IA+ L GDEL + + + + +G V S +R R
Sbjct: 662 SLDKFASQRSTGVIALTLDEGDELIGTAITDGEKDIMLFTSDGKVNRFSEADVRDTGRGA 721
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG +M L D + SM IIP A DS +L +E+G+GKR
Sbjct: 722 RGVKSMNLTDAQTIISM-IIPEA----------DS----------VILIATENGYGKRTR 760
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881
F + G+IG + S + ++A V + DE+V+L+S +G + R +
Sbjct: 761 AEEFTRHRRGGKGMIGIQTSERNGSVISACLV---------KEDEEVILISSNGVLVRTR 811
Query: 882 VRDISIQARYARGVILMRLELSGKI 906
V +ISI R +GV L+RL+ S ++
Sbjct: 812 VSEISILGRNTQGVRLIRLDESDQL 836
>gi|378949567|ref|YP_005207055.1| DNA gyrase subunit A [Pseudomonas fluorescens F113]
gi|359759581|gb|AEV61660.1| DNA gyrase subunit A [Pseudomonas fluorescens F113]
Length = 889
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/857 (42%), Positives = 532/857 (62%), Gaps = 68/857 (7%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I+PV + +E+ SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAM ELG KP+
Sbjct: 4 LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ L+ LLAD+ ++TV++VPN+D ++ P+++P R+P LL+NG+SGIAVGMATNI
Sbjct: 124 EVRMTKLAHE-LLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D ALI NPE T+ EL++Y+PGPDFPT +I G GI++AYRTGRGRI +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R ++ VE +D R ++I E+PYQ NK+ L+EKIAELV+ K L+GI+++RDESD+ GM
Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIEL+RG P +++N+LY T LQS F N+V ++DG+P+ + LK++L+AF+ R V
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL----------- 488
V RR F+L + +ER HI+EG V L N+D VI +++ +P+ S A AL
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422
Query: 489 -----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
+ ++ LS +QA AIL++ L RLT LE +K + E + +
Sbjct: 423 AMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI--DIIPNDE 583
+ QI +L +L+S ++++I +E+ ++ + R + + DA +LD D+IP +E
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDA---RLDLTLGDMIPEEE 539
Query: 584 MLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643
++ IS GY K + Q RG GKS ++ D ++ +V +H +L FS +G
Sbjct: 540 RVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGK 599
Query: 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKV 703
VY + Y+IPE +R A G PLV +L L DGE IT+++PV E+ ++ M T NG +KK
Sbjct: 600 VYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGTVKKT 659
Query: 704 SLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763
L FS R+ G+IA++L GD L + V + S G V +R++ R
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAMGRTA 719
Query: 764 RGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVP 823
RG MRL +G K+ SM I PE+ G +L S G+GKR
Sbjct: 720 RGVRGMRLPEGQKLISMLI------------PEE---------GSQILTASARGYGKRTA 758
Query: 824 LSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883
+S F + G+I + DR +VG DG E+++L+S GT+ R +V
Sbjct: 759 ISEFPEYKRGGQGVIA--MVSNDRNGR--LVGAVQVLDG---EEIMLISDQGTLVRTRVA 811
Query: 884 DISIQARYARGVILMRL 900
++S R +GV L++L
Sbjct: 812 EVSSLGRNTQGVTLIKL 828
Score = 46.2 bits (108), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 38/236 (16%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ +V ++ GY K L + + R G A + D + + + + + S
Sbjct: 538 EERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSK 597
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRL---KDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G V I SR RG + L DG+ + +M +P +
Sbjct: 598 GKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTM--LPVEEY-------------- 641
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+ G ++ + +G K+ PL SF + VGLI + D L + + DG
Sbjct: 642 --TEGHYIFMATANGTVKKTPLESFSRQ--RSVGLIALELDEGDVLISAAIT------DG 691
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E +V+L S G V R K D+ R ARGV MRL + LIS+ PE
Sbjct: 692 E--REVMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLP-----EGQKLISMLIPE 740
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 13/197 (6%)
Query: 589 SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSAR 648
+ G VK+ +F+ Q ++G +L D + + V+ FSD G V +
Sbjct: 651 TANGTVKKTPLESFSRQR--SVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFK 708
Query: 649 AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708
+ R A G V+ + L +G+++ S++ E G Q L + GY K+ +++ F
Sbjct: 709 ESDVRAMGRTARG---VRGMRLPEGQKLISMLIPEE--GSQILTA-SARGYGKRTAISEF 762
Query: 709 SSIRTTGIIAIQLVPGDE----LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
+ G I +V D + V+ ++++ ++ Q G ++ + + SL RNT+
Sbjct: 763 PEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQ-GTLVRTRVAEVSSLGRNTQ 821
Query: 765 GSVAMRLKDGDKMASMD 781
G ++L + + ++
Sbjct: 822 GVTLIKLASDETLVGLE 838
>gi|381182888|ref|ZP_09891667.1| DNA gyrase subunit A [Listeriaceae bacterium TTU M1-001]
gi|380317222|gb|EIA20562.1| DNA gyrase subunit A [Listeriaceae bacterium TTU M1-001]
Length = 839
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/839 (42%), Positives = 544/839 (64%), Gaps = 41/839 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI V L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEVNLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++V N+D S+KEP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYVDNYDGSEKEPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL H+PE T+++L+E++PGPDFPT G+IMG GI AY TGRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHDPEITIRDLMEHIPGPDFPTAGMIMGRSGIRRAYETGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVR + ++E + + ++I E+PYQ NK+ L+E+IAEL K +DGI+D+ DESDRS
Sbjct: 242 TVRARVDIET--KTNGKETIVITELPYQVNKARLIERIAELAREKKIDGITDLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+LY++TALQ++F NM+ +++ PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLYKMTALQTTFGINMLALVNNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D VI+++R + + A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAVIQLIRSSKTTEAAKEGLMTQFSLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLIALITDLKAILADEERILEIIREELEEIKLKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D ++D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILTGDLVSIEDEDLIPEEEVAVTLTKRGYIKRLPLSTYRSQRRGGRGVQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY A+ Y+IPE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGHK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I D IR + R G +RL+ D++ M+I+ ED
Sbjct: 660 NMIIATKDGQSIYFPEDNIRVMGRTAAGVRGIRLRADDEVIGMEIL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVFV 853
+L V+E+G+GK+ + PL G +G K RL A+
Sbjct: 708 DEK---------VLVVTENGYGKQTAAEQY---PLRNRGGMGVKTVSITEKNGRLVAMKT 755
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
V GE D ++L++ SG + R +V +S R A GV L+RL+ K+ + + +
Sbjct: 756 V------TGEED--IMLMTVSGVLIRFEVDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|385798924|ref|YP_005835328.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
Length = 864
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/821 (42%), Positives = 530/821 (64%), Gaps = 35/821 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ R+ +++ +EM SY+ YSMSV++GRALPDVRDGLKPVHRRIL+A+ +LG++ +KP K
Sbjct: 5 AARVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEVLGK+HPHGD AVYD++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE
Sbjct: 65 KSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ M+ DI ++TV+FVPNFDES +EP +LPAR P LL+NG+SGIAVGM+T+IP
Sbjct: 125 ARMSPIASEMM-TDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D + LI+ PE +EL+ + GPDFPTGG IMG I AY+ GRG++TVR
Sbjct: 184 PHNLGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLTVR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
KT VE D + R +I+ E+PYQ NK+ L++KIA+LV+N+ L+ ISDIRDESDR GMR
Sbjct: 244 AKTRVE--DLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A P +V+N LY+ + LQ +FS M+ ++D +PK + LK++L+ +L+ + VV
Sbjct: 302 IVIELKREATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++ L + +R HI+EG + L N+D ++ +++ A TA L + +KLSE QA+
Sbjct: 362 RRRTQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMENYKLSETQAN 421
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M L+ LT LER K E L EQI +L+S + +L++I++E++ +K +++
Sbjct: 422 AILRMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEEKLLEIIKEEILAIKAKYNDE 481
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + + L+ D+I +++++ ++ +GY+KRM + + Q RG G +
Sbjct: 482 RRTSIMNR-ATDLELEDLIEEEQIVVTMTNQGYIKRMPLDLYRSQRRGGKGVIGISTKEE 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + H L+F+++G VY + Y+IPE R A GT ++ +L L +GE+I ++I
Sbjct: 541 DFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARGTAIINLLELEEGEKINAVI 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D +L+M T NG IKK +L +++ TG+IAI L DEL VR + +
Sbjct: 601 PIKEFPADAYLIMATKNGLIKKTALEEYNT-NYTGLIAINLRENDELIGVRVIEAKENIF 659
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++N I S +RS+ RN+ G + L+ D++ + I
Sbjct: 660 LVTRNAKAIHFSEADVRSVGRNSYGVKGINLETEDEVIDLGI------------------ 701
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
S+G LL ++E+G+GKR +S +R G++ + ++ +LAA +V SL
Sbjct: 702 ---DSAGDELLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKNGQLAAARIVDDSL- 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+++ ++Q+G + R+ +IS R GV ++ +
Sbjct: 758 -------EMMAITQAGIIIRVAASEISTTGRNTMGVKIINV 791
>gi|344199537|ref|YP_004783863.1| DNA gyrase subunit A [Acidithiobacillus ferrivorans SS3]
gi|343774981|gb|AEM47537.1| DNA gyrase, A subunit [Acidithiobacillus ferrivorans SS3]
Length = 845
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/868 (42%), Positives = 536/868 (61%), Gaps = 64/868 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAMHE+ KP+KK AR
Sbjct: 9 IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMNNDWNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD++VRMAQDFS+RYPLI G GNFGS+D D AAMRYTE R+
Sbjct: 69 VVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ M LAD++++TV+F PN+DE + EP ++PAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIAHEM-LADLEKETVDFGPNYDEKEWEPLVMPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++ AL+ +PE + ++L +P PDFPT G I G G ++AYRTGRGR+ +R + E
Sbjct: 188 TEVISACLALVDDPETSDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVMRARCE 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E D K+ R +I+ E+PYQ NK+ L+E+IAE+V+ K L+GISD+RDESD+SGMRI IE
Sbjct: 248 FE-TDKKTNRQSIIVSELPYQVNKARLIERIAEMVKEKRLEGISDLRDESDKSGMRIAIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A+ +V+N+LY+ T +QS F+ NMV +LDG P+ +GL+++LQAF+ R VV RR
Sbjct: 307 LKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS-------------AAL--- 488
F+L + ++R HI+EG+ V L NLD +I ++R A + + A AAL
Sbjct: 367 VFELKKARDRAHILEGLAVALVNLDPLISLIRAAANPAEAKAQMLAKSWEPGMVAALLVE 426
Query: 489 ---------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
D + LSE QA AILD+ L RLT LE+ K DE L+++I +L E+L S+
Sbjct: 427 RAEPSEGMQADGYHLSETQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEILGSK 486
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
++++I +E++ +++++ R S + AD+G + D+I +EM++ + GY+K
Sbjct: 487 TRLMEVIREELVAIRDQYGDARRSEIV-ADTGDISTEDLITEEEMVVTFTHAGYIKAQPV 545
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
FN Q RG GK + D + H + L+FS+ G V+ + Y++P+ R A
Sbjct: 546 TVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQAGRGA 605
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G P+V +LSL+ ERIT+++PV +F QF+ M+T +G +KK + +S R+ GI AI
Sbjct: 606 KGKPIVNMLSLAPTERITAVLPVRDFTEGQFVCMVTSHGVVKKTPVMEYSRPRSQGINAI 665
Query: 720 QLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMAS 779
L PGD L V + +++GM + R++ RN RG + L++ D++ S
Sbjct: 666 NLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKARAMGRNARGVRGISLEENDRVIS 725
Query: 780 MDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
+ S +L + +G+GK + +R+ G+I
Sbjct: 726 AQWV---------------------DSSQVILTTTANGYGKLTEVDEYRRTNRGGKGVIA 764
Query: 840 YKFSAE--DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
+ +A D + A+ V E DE ++LVS GT+ RI + I R A+GV L
Sbjct: 765 IQTNARNGDVVGALAVT--------ERDE-LMLVSDHGTLIRIAINSIRRTGRNAQGVRL 815
Query: 898 MRLELSGKIQSASLISVTEPE----TDL 921
+ L ++ +LI+ TE E TDL
Sbjct: 816 INLGEGEQLAGLALIADTEEEEGEQTDL 843
>gi|146295091|ref|YP_001178862.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145408667|gb|ABP65671.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 809
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/832 (41%), Positives = 531/832 (63%), Gaps = 33/832 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+PVE+ EEM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GL+ KP++K
Sbjct: 7 RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VL K+HPHGD AVY+SLVRMAQDFS+R+PL+ GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+F+PNFDES KEP +LP+R P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAIEML-RDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L+ N A L ++++ + GPDFPTGG I+G GI DAY TG+G+I VR K
Sbjct: 186 NLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKIIVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R +++ E+PY NK+ L+EKIAELV K +DGISDIRDESD+ G+RIV
Sbjct: 246 ATIE--QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ AD ++V+ LY+ T LQ SF M+ ++D QPK + L ++L +++ + V+ R
Sbjct: 304 IEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVIVR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + +ER HI+EG+ LD++D +I I+R + + + A L F +E QA AI
Sbjct: 364 RTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFGFTEVQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K +E L++ I + +L++ + ++I++E++E+K ++ R
Sbjct: 424 LDMRLQRLTGLERQKIEEELAELLKMIEYYKNVLANEAMVKEIIKKEILEIKEKYKDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + ++ ++I + ++ ++ GY+KR+ +T+ Q RG G + R D
Sbjct: 484 TKIIQDEQEDFEEEELIQEQDTVITLTHFGYIKRLPLDTYKSQKRGGKGITGISTREEDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + V H ++L+F+D+G Y RAY++PE +R A GT +V ++ + E+IT+ + V
Sbjct: 544 VEEVFVTTTHHYILFFTDKGKAYRLRAYEVPEASRQAKGTAIVNLIQIGKDEKITACMTV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + FL+M T NG IKKV L+ F + G AI L D L V+ + +D + +
Sbjct: 604 KDFK-EGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCLIDVKLTSGNDEMVLV 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
S G ++ + + +R + R+ +G M L+DGD + M+
Sbjct: 663 SSGGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFVVGME--------------------- 701
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
K S G +LL V+E+G GKR + +RK G++ YK + + +V + D
Sbjct: 702 KASDGKYLLCVTENGFGKRSDIEEYRKTKRGAKGVLTYKVTEK----TGRIVDIKMVND- 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
+++++L S G R+++ + +Q R +GV LMR++ S I+ +S+ +
Sbjct: 757 --EDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRID-SDSIKVSSIARI 805
>gi|431792076|ref|YP_007218981.1| DNA gyrase subunit A [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430782302|gb|AGA67585.1| DNA gyrase subunit A [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 833
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/818 (42%), Positives = 527/818 (64%), Gaps = 31/818 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++P E+ EE+ S+I YSMSV++ RALPDVRDGLKPVHRRI++ +HELG++ KPF KC
Sbjct: 10 KVLPREISEELRKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPFSKC 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GKFHPHGD+++YD++VR+AQDFS RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 70 ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLVEGHGNFGSVDGDSAAAMRYTEAR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++ ML ADI++DTV+F PN+DE +EP +LPA+ P LL+NG+SGIAVGMATNIPPH
Sbjct: 130 MSKITQYML-ADIEKDTVDFQPNYDERLEEPKVLPAKFPNLLVNGSSGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N E++D A + NP+ ++EL+ Y+ GPDFPTG IMG GI+ AY TG+G +R K
Sbjct: 189 NFVEVIDGTIAQMDNPDIEIKELMTYIKGPDFPTGATIMGTEGIISAYNTGKGSFKIRAK 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ KS +M +I+ E+PY NK+ LVEKIAELV K ++GI+D+RDESDR+GMR+V
Sbjct: 249 AHIEEME-KSGKMRIIVTELPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRVV 307
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+R +P +++N LY+ T ++ SF N++ ++DGQPK + LK+++ F++ + V+ R
Sbjct: 308 MELRRDINPQVLLNQLYKHTQMEDSFGVNLLALVDGQPKVLNLKQIIHYFIEHQKDVITR 367
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF+L++ + HI+EG+ + LD +D VI I+R + A L F LS+KQ+ AI
Sbjct: 368 RTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSSDEQNAKDKLMTRFGLSDKQSQAI 427
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM L+RLT LER+K ++ K L E I L+ +L S K +L +I+QE+ E+K +F R
Sbjct: 428 VDMRLKRLTGLEREKIEEQYKKLQETIAFLKAVLDSEKMVLDIIKQELQEVKEKFGDERR 487
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D ++ D+I ++E+++ +S +GY+KR+ +T+ Q RG G R D
Sbjct: 488 TEI-SFDVSHMNIEDLIDDEEVVVTMSHRGYIKRIPLSTYKSQRRGGRGVQGMATREEDF 546
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSIIP 681
+ AH ++L+F+ RG VY +AY+IPE R GT +V +L+++ E+IT+ +
Sbjct: 547 VEHLFTTTAHQYILFFTTRGKVYRLKAYEIPEAGRTGKGTAIVNLLNINPSEEQITTALC 606
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ E+ D L M T +G +KK L ++S R G+IAI L DEL VR D+ + M
Sbjct: 607 IREYNDDFHLFMATKHGIVKKTLLREYNSSRKDGLIAISLHEDDELIGVRLTKADEHIIM 666
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
A+Q G+ I + +R + R G + L + D + SMD+I ED+
Sbjct: 667 ATQKGLCIRFAESDVRQMGRTAHGVKGISLSEKDTVVSMDVI----------YEEDAE-- 714
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+L ++E G KR S +R G+I + + + L +VG +
Sbjct: 715 --------ILSMTEHGFSKRTNPSEYRVQGRGGKGIIASRLTEKTGL----LVGLKVI-- 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
D+ +++++ G + R +V IS Q R A+GV+ MR
Sbjct: 761 -VPDDDIMIITDDGIIIRQEVTGISKQGRSAQGVMAMR 797
>gi|429082133|ref|ZP_19145220.1| DNA gyrase subunit A [Cronobacter condimenti 1330]
gi|426549087|emb|CCJ71261.1| DNA gyrase subunit A [Cronobacter condimenti 1330]
Length = 878
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/887 (41%), Positives = 547/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD+D++TV+FV N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEV-DPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK++L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMPLKDILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R AP+ S A A L
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIANAWELGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELVRDQFGDERRTEIT-ANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLKDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS RT GIIA+ L GDEL V +D V + S G V+ + +R + R
Sbjct: 660 LTEFSRPRTAGIIAVNLNEGDELIGVDLTAGNDEVMLFSAQGKVVRFKENAVRPMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GD + S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDSVVSL-IVP------------------RGEGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + DR VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATKGVISIKVT--DRNGP--VVGAVQVDDA---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L S +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDSIDGSVA 856
>gi|401679227|ref|ZP_10811160.1| DNA gyrase, A subunit [Veillonella sp. ACP1]
gi|400219809|gb|EJO50671.1| DNA gyrase, A subunit [Veillonella sp. ACP1]
Length = 821
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/840 (42%), Positives = 542/840 (64%), Gaps = 33/840 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VY++ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYNATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITQEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLEMLIDNPDVTVDELMTKIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +K K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-AKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + + +R + R G ++LK GD + ++ +
Sbjct: 667 TKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLES----------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G+GKR ++ + + G IG K F D+ V V E
Sbjct: 710 -DESEAQVFTISEEGYGKRNEADAYN---VQKRGGIGTKNFRINDKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYA-RGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI+++ A GV L+ K+ S ++I +E E++
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIESE 820
>gi|418635569|ref|ZP_13197944.1| DNA gyrase, A subunit [Staphylococcus lugdunensis VCU139]
gi|374841836|gb|EHS05292.1| DNA gyrase, A subunit [Staphylococcus lugdunensis VCU139]
Length = 894
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++YD++VRMAQ FS RYPL+ G GNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EP++LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L NP+ T+ EL+E + GPDFPT G+I+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIPYQ NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ ++++N+LY+LT LQ+SF NM+ ++DG+PK + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKL+E+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L++ E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIA 604
Query: 682 VSEFAGD-QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V++ + +L+ T NG +K+ +L+ FS I G IAI DEL VR +
Sbjct: 605 VNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRLTDGQQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I + +R L R G + L++GD + +D+ +HS
Sbjct: 665 IGTAHASLIRFAETSLRPLGRTAAGVKGITLREGDTVVGLDV---------------AHS 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+ +R L+ G G K + +R V +
Sbjct: 710 ----ESEDEVLVVTENGYGKRTPVREYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ G + R+ V+DIS R A+GV LMRL
Sbjct: 763 E-----EDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRL 798
>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
Length = 930
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/885 (43%), Positives = 533/885 (60%), Gaps = 67/885 (7%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++MHE G KP++K A
Sbjct: 17 IRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 76
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+A+YD+LVRMAQDFS+R PLI G GNFGSID D AAAMRYTECRL
Sbjct: 77 RVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGSIDGDRAAAMRYTECRL 136
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++ L+DID+DTVNF N+D S++EP +LPAR P LL+NGA GIAVGMATNIPPHN
Sbjct: 137 EKVAHTQ-LSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGAGGIAVGMATNIPPHN 195
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+GE++D A+I PE TL EL+E +PGPDFPTGG+I+G GI AY GRG + +R K
Sbjct: 196 MGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKAAYENGRGSVIMRSKV 255
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+ E + ++ RM +I+ EIPYQ NKS ++EKIAELV K ++GISDIRDESDR GMR+VI
Sbjct: 256 DTEEI--RAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDIRDESDRQGMRVVI 313
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A P ++VN LYR + LQ SF CNMV + G+P+Q+ LK++L+AF+ FR VV RR
Sbjct: 314 ELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLKAFIAFREEVVGRR 373
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
RF L++ ++R H++ G+ V N+D VI ++R AP +TA L +
Sbjct: 374 TRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLMERNWPAKDIEPLIQ 433
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
FKLSE QA AILD+ L+RLT L R + DE L +I ++L
Sbjct: 434 LIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDKLAAEIKDYLDILK 493
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR+ IL+++ E+ E+++ F+TPR + + D LDD D+I ++M++ +S GY+KR+
Sbjct: 494 SRERILEIVRTELEEVRDEFATPRRTEITDGGG-DLDDEDLIQREDMVVTVSHSGYIKRV 552
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+T+ Q RG G+S + + D ++ V H VL+FS RGI Y + +++P
Sbjct: 553 PLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAYKMKVWRLPLAGP 612
Query: 658 NAAGTPLVQILSLSDGERITSIIPV---SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
A G LV +L L GERITSI+P+ E + ++ T G I++ L+ F+ I
Sbjct: 613 QARGNALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRRNKLSDFAQINKN 672
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLKD 773
G IA++L GD + V T DD V + + GM I +R S RN+ G + L +
Sbjct: 673 GKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVGVRGINLAE 732
Query: 774 GDKMASMDIIPAALHKDLERTP----------EDSHSNVK--------------GSSGPW 809
GD + SM I+ ERT E+ +V +
Sbjct: 733 GDHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFEDAGMTKERFEAMDENAEV 792
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQV 868
+L VSE+G+GKR +R G+ + + RL A F ESDE +
Sbjct: 793 ILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRNGRLVASF-------RSEESDE-I 844
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+LV+ G + R V I + R +GVI+ K+ + IS
Sbjct: 845 MLVTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERIS 889
>gi|405984210|ref|ZP_11042513.1| DNA gyrase, A subunit [Slackia piriformis YIT 12062]
gi|404388042|gb|EJZ83126.1| DNA gyrase, A subunit [Slackia piriformis YIT 12062]
Length = 862
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/833 (43%), Positives = 531/833 (63%), Gaps = 35/833 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
EL +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM++ G++ +P K AR VG
Sbjct: 20 ELGKEMRTSFLEYSMSVIMSRALPDVRDGLKPVHRRILYAMYDSGITPNRPHSKSARTVG 79
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD AVYD++VR+AQDFS+R PL+ GHGNFGSID D AAAMRYTE RL A
Sbjct: 80 DVIGKYHPHGDFAVYDTMVRLAQDFSMRVPLVDGHGNFGSIDGDSAAAMRYTEARL-AKP 138
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D++++TV++ PN+DES +EP +LPAR P LL+NG++GIAVGMATNIPPHNLGE
Sbjct: 139 AMELLRDLEKETVDWRPNYDESLQEPEVLPARFPNLLVNGSNGIAVGMATNIPPHNLGET 198
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+D C ++ NP+ T +EL++ +PGPDFPTGG++MG GI+DAY TGRG +T+R K ++
Sbjct: 199 IDATCLMLDNPDVTTEELMKVLPGPDFPTGGIVMGRKGIIDAYETGRGSLTIRAKHKI-- 256
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELK 386
++ K+ + ++I EIPYQ N++ L++K+ EL+ K L IS++ D +DR S + I+IELK
Sbjct: 257 VEGKNGKSSIVITEIPYQVNRTNLMQKLGELIREKKLPEISNVHDGADRNSPVDIIIELK 316
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A P +V+N LY+ T LQ + NM+ ++DG P + LKE+L ++ + V+ RR R+
Sbjct: 317 QNAIPQVVLNKLYKHTQLQVGWGVNMLALVDGVPHTLSLKEMLFHYIKHQEDVIIRRTRY 376
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + +ER HI+EG++V LDN+D VI I+R + ++ ASA L + F LSE Q AIL+M
Sbjct: 377 DLRKAEERAHILEGLLVALDNIDEVIAIIRGSQTDKEASAKLIERFNLSEAQTAAILEMR 436
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LER K DE K L E+I +++LS + Q+I++E+ E+KN+F+TPR ++L
Sbjct: 437 LRRLTGLERHKLEDELKELREKIAYYKQILSDEVLMRQVIKEELQEIKNKFNTPRRTLL- 495
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
A + LD D+I ++M++ +++ GYVKR+ T+ Q RG G L+ ND +
Sbjct: 496 SAAAKDLDMEDLIAEEDMVVTVTKAGYVKRLPVATYRQQKRGGKGMQGVNLKDNDFVEHL 555
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
V H ++L+FS G VY + Y++PE +R+A GT +V +L L+ GE I++II +F
Sbjct: 556 FVASTHSYMLFFSTAGKVYRLKVYELPEASRHARGTAIVNLLPLAKGETISAIIATKDFP 615
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
D+FL+ T G +KK S++L+ R G+IAI L GD L VR + V M S G
Sbjct: 616 EDEFLMFGTEQGMVKKTSMSLYDRTRRDGLIAINLKEGDSLIAVRRVKRGEKVMMVSSAG 675
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I+ R++ R+T G M + K+ M+I D E
Sbjct: 676 KAIMWDEAEARAMGRDTMGVRGMTVPGDVKVLGMEIAKP----DTE-------------- 717
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESD 865
L ++E G+GKR P+S + + G+ + + L A+ VV E+D
Sbjct: 718 ---LFVITEKGYGKRTPVSEYPEHHRGGQGVFTITMTEKKGLLTAMKVV-------READ 767
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
E ++++S+ G V R V D+S R +GV +M + K+ + ++ + + E
Sbjct: 768 E-LMIISEEGVVIRTPVEDVSQLGRSTQGVRVMNVAEEDKVTAVAIATDSTKE 819
>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
gi|385782962|ref|YP_005759135.1| DNA gyrase subunit A [Staphylococcus lugdunensis N920143]
gi|418415557|ref|ZP_12988762.1| DNA gyrase subunit A [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
gi|339893218|emb|CCB52399.1| DNA gyrase subunit A [Staphylococcus lugdunensis N920143]
gi|410875013|gb|EKS22943.1| DNA gyrase subunit A [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 894
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++YD++VRMAQ FS RYPL+ G GNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EP++LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L NP+ T+ EL+E + GPDFPT G+I+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIPYQ NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ ++++N+LY+LT LQ+SF NM+ ++DG+PK + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKL+E+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L++ E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIA 604
Query: 682 VSEFAGD-QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V++ + +L+ T NG +K+ +L+ FS I G IAI DEL VR +
Sbjct: 605 VNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRLTDGQQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I + +R L R G + L++GD + +D+ +HS
Sbjct: 665 IGTAHASLIRFAETSLRPLGRTAAGVKGITLREGDTVVGLDV---------------AHS 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+ +R L+ G G K + +R V +
Sbjct: 710 ----ESEDEVLVVTENGYGKRTPVGEYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ G + R+ V+DIS R A+GV LMRL
Sbjct: 763 E-----EDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRL 798
>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
Length = 808
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/834 (42%), Positives = 536/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++FKL+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|390443591|ref|ZP_10231380.1| DNA gyrase subunit A [Nitritalea halalkaliphila LW7]
gi|389666387|gb|EIM77838.1| DNA gyrase subunit A [Nitritalea halalkaliphila LW7]
Length = 854
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/835 (43%), Positives = 539/835 (64%), Gaps = 35/835 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + +EM G+YI YSMSV++ RALPDVRDGLKPVHRRILF M ELG+ +P+KK A
Sbjct: 9 IIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGVLHNRPYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLGK+HPHGD+AVY+++VRMAQ +SLRYPL+ G GNFGSID D AAAMRYTE RL
Sbjct: 69 RIVGEVLGKYHPHGDSAVYETMVRMAQPWSLRYPLVDGQGNFGSIDGDNAAAMRYTEARL 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E LL DI+++TV+F NFD+S KEP +LPA++P LLLNGASGIAVGMATN+ PHN
Sbjct: 129 KRIAEE-LLVDINKETVDFQFNFDDSLKEPVVLPAKIPALLLNGASGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+VD + A I NP+ ++ +L++Y+ PDFPTGG+I G G+ +A+ TGRGR+ VRGK
Sbjct: 188 LAEVVDGITAYIDNPDISIADLMQYVLAPDFPTGGIIYGYTGVKNAFETGRGRVVVRGKA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
EVE D+ R +II EIPY NK+ ++EK A L+ K +DGIS IRDESDR GMRIV
Sbjct: 248 EVETKDNG--REMIIITEIPYLVNKASMIEKTAALINEKKIDGISAIRDESDRQGMRIVY 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A S+V+N+LY+ T LQ+SFS N V ++ G+P+ + LK++++ ++ R V+ RR
Sbjct: 306 ELKKDAVASVVLNNLYKQTQLQTSFSVNNVALVKGRPQTLNLKDLIKHYVHHRHEVIFRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++L + ++R HI++G ++ LD+LD VI ++R + TA L + F+LSE QA AIL
Sbjct: 366 TTYELREAEKRAHILQGYLIALDHLDEVITLIRSSRDPETARNGLMERFELSEIQARAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT +ER+K E +M+ I +L+++L + +QLI+ E+ E+K R++ R +
Sbjct: 426 DMRLQRLTGMEREKIQAEYDEIMKLIEELKDILEHEERRMQLIKDELQEMKERYADERRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++E ++ D+IPN+E+++ +S +GYVKR + Q+RG +G + +D
Sbjct: 486 VIEH-NAEDFSYEDMIPNEEVVITVSHQGYVKRTALTEYRTQSRGGVGSKGVSTKEDDWT 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
H+++L F+D G ++ +AY IPE ++ A G P+ ++++S ++I SII V+
Sbjct: 545 EYIFSASTHNYLLIFTDLGKLFWLKAYAIPEGSKTAKGRPIQNLINISADDKIRSIIQVA 604
Query: 684 -----EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
++ + FL+M+T G IKK SL L++ RT GIIA+ + GD+L V D
Sbjct: 605 NLEDEDYVKNNFLIMVTKEGVIKKTSLELYARPRTNGIIALNIREGDQLIRVEKTNGDSH 664
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V +A+++G I +R + R G A+ L+D ++I + E T
Sbjct: 665 VIIAAKSGRAIHFHESTVRPMGRTATGVKAISLQDEQD----EVIGMVCAEREEAT---- 716
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
LL VSE G+GKR L ++R NR G S ++ + ++
Sbjct: 717 -----------LLVVSEKGYGKRTLLDAYR--ITNRGGKGVKAMSVTEKTGNL----VAI 759
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +SD+ ++++++SG R V D+ + R +GV L++L + +I S I+
Sbjct: 760 KEVVDSDD-LMIINKSGITIRTPVSDLRVMGRATQGVRLIKLSETDEISSVEKIT 813
>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
lugdunensis M23590]
gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
lugdunensis M23590]
Length = 894
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++YD++VRMAQ FS RYPL+ G GNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EP++LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + L NP+ T+ EL+E + GPDFPT G+I+G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIPYQ NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ ++++N+LY+LT LQ+SF NM+ ++DG+PK + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKL+E+QA A
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L++ E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIA 604
Query: 682 VSEFAGD-QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V++ + +L+ T NG +K+ +L+ FS I G IAI DEL VR +
Sbjct: 605 VNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRLTDGQQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I + +R L R G + L++GD + +D+ +HS
Sbjct: 665 IGTAHASLIRFAETSLRPLGRTAAGVKGITLREGDTVVGLDV---------------AHS 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
S +L V+E+G+GKR P+ +R L+ G G K + +R V +
Sbjct: 710 ----ESEDEVLVVTENGYGKRTPVGEYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ G + R+ V+DIS R A+GV LMRL
Sbjct: 763 E-----EDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRL 798
>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
Length = 827
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 537/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKIELLEIKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ G+ AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGVRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVI-------------- 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 708 ------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
WAL-14163]
gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
WAL-14163]
gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
Length = 850
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/852 (41%), Positives = 534/852 (62%), Gaps = 45/852 (5%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV ++ ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ +S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI++DTV+F PNFDE++KEP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E +L+E+LE + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR ++E L + R +++ E+PY NK+ L+EKIAELV+ K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVYDIETLANGKNR--IVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMR+ IEL+R + ++++N L + T LQ +F M+ +++ +P+ + LK++L+ +
Sbjct: 300 ESNREGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI+EG++ LD++D VI+I+R + + + A A L + F
Sbjct: 360 LQHQEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LSE QA AI+DM LR LT LER+K +E + LM +I +L+ +L+ K +L +I +E+I
Sbjct: 420 ALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEKKLLGVIREEIIV 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP+D++++A++ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDERRTAI-GYDEYDMSAEDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D ++ H +V++F++ G VY +AY+IPE R A GT +V +L L
Sbjct: 537 GIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+ITSII + EF D++L M T NG +KK SL + ++R G+ AI L DEL V
Sbjct: 597 MPGEKITSIIAMKEFEDDKYLFMATRNGMVKKTSLKEYENVRKNGLQAIVLRENDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + + ++ GM I +R R + G + M+ + D++ M +
Sbjct: 657 KRTDNTEDIFLVTKKGMCIRFHETDVRVTGRVSMGVIGMKFDEDDEVIGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF--SAEDRL 848
S G LL SE G+GKR P+ F G+ YK D +
Sbjct: 709 -------------SSQGECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGDLI 755
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
A V ++ +++L++ G + ++ V DISI R GV LM ++ I
Sbjct: 756 GAKLV---------DNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAV 806
Query: 909 ASLISVTEPETD 920
AS+ V E E +
Sbjct: 807 ASIAKVRESENN 818
>gi|442806173|ref|YP_007374322.1| DNA gyrase subunit A [Clostridium stercorarium subsp. stercorarium
DSM 8532]
gi|442742023|gb|AGC69712.1| DNA gyrase subunit A [Clostridium stercorarium subsp. stercorarium
DSM 8532]
Length = 840
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/843 (42%), Positives = 536/843 (63%), Gaps = 43/843 (5%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+ I+PV++ EM S+I Y+MSV++ RALPD+RDGLKPVHRRIL+ MH G + KP
Sbjct: 23 NMESGIIPVDIEAEMKQSFIDYAMSVIVDRALPDIRDGLKPVHRRILYTMHISGFTPDKP 82
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K VGE L FHPHGD AVYDSLVR+AQDF++RYPLI GHGNFGSID D AAMRY
Sbjct: 83 YRKSVATVGETLKSFHPHGDAAVYDSLVRLAQDFTMRYPLIDGHGNFGSIDGDAPAAMRY 142
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL+ ++ M L DI++D V+F PNFD+ EP +LP+R P LL+NG+SGIAVGMATN
Sbjct: 143 TEARLQKIALEM-LRDINKDAVDFKPNFDDHDVEPVVLPSRFPNLLVNGSSGIAVGMATN 201
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E +D + +I +P+A + EL+EY+ GPDFPTGG+I+G GI DAY TG+GRI
Sbjct: 202 IPPHNLCEAIDAIVYMIDHPDADIPELMEYIKGPDFPTGGIIIGKKGIYDAYTTGKGRII 261
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR TE+E +R +++ E+PYQ NK+ L+EKIA LV+ K ++GISD+RDESDR G
Sbjct: 262 VRAVTEIETYSGNRQR--IVVTELPYQVNKARLLEKIASLVKEKRIEGISDLRDESDREG 319
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGIL---DG--QPKQMGLKEVLQAFL 433
+RIVIELK+ + ++V+N L+ T LQ +F+ NM+ ++ DG +PK + LKE++ ++
Sbjct: 320 IRIVIELKKDTNANVVLNQLFVNTQLQDTFNVNMLALIQLPDGKFEPKVVNLKEMIYYYI 379
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ V+ RR ++ L + + R HI+EG+ + LD+LD VI I+R++ + + A L + F
Sbjct: 380 QHQRDVIRRRTKYDLEKAEARAHILEGLKIALDHLDEVINIIRQSHTENQAKEKLTERFG 439
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
LSEKQ+ AI+DM L RLT LER+K +E L+++I E+L + + +I++E+IE+
Sbjct: 440 LSEKQSQAIVDMRLGRLTALEREKIEEEYNELLKEIAHYREILEKPELVDAIIKEELIEI 499
Query: 554 KNRFSTPRLSMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTI 610
+N++ R + + + D +DI D+I N ++++ ++ GY+KR + + +Q RG
Sbjct: 500 RNKYGDERRTKITNDD----EDIVIEDLIDNTDIVITLTHYGYIKRTSVDEYKIQKRGGR 555
Query: 611 GKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
G R +D ++ H +L+F++RG VY RA+ IPE R+A GT +V +L L
Sbjct: 556 GVMGLTTREDDFVTSIYTATTHHLLLFFTNRGKVYKLRAWDIPEAGRHAKGTAIVNLLEL 615
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+++++IP++ D FL M T G +KK L F +IR G+IA+ L GDEL V
Sbjct: 616 EPGEKVSAVIPITGEEKDMFLFMATRQGMVKKTPLEQFENIRKGGLIAVTLKEGDELIEV 675
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
R +D V + ++NGM I +R + RN++G + ++L D D++ SM
Sbjct: 676 RLTDGNDDVILITKNGMSIRFPESDVRPMGRNSQGVIGIKLSDDDEVISM---------- 725
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
++ + LL V+E+G GKR + ++ G++ YK + +
Sbjct: 726 -----------LRYTENTTLLVVTENGFGKRTDIEEYKVQNRGGKGILTYKVTEK----T 770
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
FVVG L +D + ++LV+ G + R+ V +ISI +R +GV LM+ K+ S +
Sbjct: 771 GFVVGAKLVDD---QDDILLVNTDGNIIRLHVGEISILSRVTQGVTLMKTAEGSKVVSVA 827
Query: 911 LIS 913
I+
Sbjct: 828 RIT 830
>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
Length = 932
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/825 (41%), Positives = 530/825 (64%), Gaps = 32/825 (3%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
L +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E G + +P K AR VG+
Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
V+GK+HPHGD AVYD++VR+AQ FS+R PL+ GHGNFGSID D AAAMRYTE RL+ ++
Sbjct: 151 VIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVA- 209
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
LL D+D++TV+F PN+DES +EP++LPAR P LL+NG+ GIAVGMATNIPPHNLGE +
Sbjct: 210 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETI 269
Query: 269 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
D C ++ NP+ T +EL++ +PGPDFPTGG+IMG GI DAY TGRG +TVR K +VE
Sbjct: 270 DATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVE-- 327
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K+ R +++ EIPYQ N+ L+EK+ ELV K L IS+I D +DR G+ I+I+LK+
Sbjct: 328 EGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKD 387
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
A P +V+N LY+ T LQ F M+ ++DG P+ + LKE+L ++ + V+ RR R++L
Sbjct: 388 AIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYEL 447
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
++ +ER HI+EG+++ LDN+D +I I+R + ++ A+ + + F L++KQ AIL+M LR
Sbjct: 448 AKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILEMRLR 507
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RLT LE +K DE K L+E+I + +LS + + ++I++E++E+K +F +PR ++L +A
Sbjct: 508 RLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSPRRTLLSEA 567
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+ LD D+I + M++ +++ GYVKR+ T+ Q RG G S L+ ND + V
Sbjct: 568 -AKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNLKDNDYVEHLFV 626
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
H ++L+FS +G VY + Y++PE +R+A GT +V +L L GE I+++I +F D
Sbjct: 627 ASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSD 686
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
++L+ T +G +KK S++L+ R G+IAI L D L V+ + V M S G
Sbjct: 687 EYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKA 746
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I+ +R++ R+T G + M++ P A +E D+
Sbjct: 747 IMWDEGEVRAMGRDTMG-----------VRGMNVPPIAKVLGMEIAQPDTD--------- 786
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
L ++E G+GKR P++ + + G+ + + L AV + +AE D+++
Sbjct: 787 -LFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKI---VAE----DDEI 838
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++S+ G R V IS R +GV +M+ ++ + ++ S
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAISS 883
>gi|418307278|ref|ZP_12919003.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21194]
gi|365245847|gb|EHM86451.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21194]
Length = 887
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/821 (42%), Positives = 534/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ LDD D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SIDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|421713011|ref|ZP_16152342.1| DNA gyrase, A subunit [Helicobacter pylori R32b]
gi|407216377|gb|EKE86214.1| DNA gyrase, A subunit [Helicobacter pylori R32b]
Length = 826
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 538/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM+ELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMYELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNKVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRCTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 809
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/832 (42%), Positives = 541/832 (65%), Gaps = 38/832 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I V++ ++M SY+ YSMSV++ RALPDVRDGLKPVHRRIL+ M EL L S +KK A
Sbjct: 11 IFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+++Y++ VR+AQDF++RYPL+ G GNFG+ID D AAAMRYTE ++
Sbjct: 71 RLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTEVKM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+E ML DI++DTV FVPNFD Q+EPS+LP+R P LL+NG+SGIAVGMATN+PPHN
Sbjct: 131 TKLAEEML-RDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D + I + + ++ +L E + GPDFPTG LIMG GI AY+TGRG+ITVR
Sbjct: 190 MNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGRGKITVRAVA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+ ++ K R ++I E+PYQ NKS LV KIAEL ++K +DGIS I D S++ G+RIVI
Sbjct: 250 EI--VEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
+LK+ A+ ++V+N LY+ T LQ ++ + +++G+P+ + LKE+++ ++D + V+ RR
Sbjct: 308 DLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQVEVITRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF L++ + R HIVEG+ + LDN+DRVI+I+R + + EF L++ Q+ AIL
Sbjct: 368 TRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E L+E I + +E+L + +++LI+ E++E+K+++ R +
Sbjct: 428 DMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+++ ++S +D DII +++++ +++ GY+KRM T+ Q RG G + + +D +
Sbjct: 488 VIKSSES-DIDIEDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ V HD +L+F+++G VY +A+++PE RNA GT +V +L+L GE+ITS+I V
Sbjct: 547 KELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVE 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF D +L+M+T G IKK S F +IR G+I I+L D+L V D+ + + +
Sbjct: 607 EFDPDHYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVT 666
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I S D +R RNT G +M L + D + S DI+
Sbjct: 667 KEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTIVSSDIV-------------------- 706
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNR--VGLIGYKFSAED-RLAAVFVVGFSLAE 860
G +LL VSE+G GK L +R P NR G+ YK S + +++A VV S
Sbjct: 707 -GDGNYLLTVSENGFGKLTELKEYR--PQNRGGKGIFTYKISEKTGKVSAASVVNKS--- 760
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ ++L++ SG + R+ + DIS+ +R GV LM L S + A I
Sbjct: 761 -----DDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLNDSKIVAIAKYI 807
>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
gi|158433358|gb|EDP11647.1| DNA gyrase, A subunit [Eubacterium dolichum DSM 3991]
Length = 824
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/854 (42%), Positives = 547/854 (64%), Gaps = 41/854 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++ V++ +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL AM+ELG+ + KPFKK
Sbjct: 7 KLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD AVYD++VRMAQDFS RY L++GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++TV+FVPN+D +KEPS++PAR P LL+NG+ GIAVGMATNIPPH
Sbjct: 127 MSKIAMEML-KDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLE-YMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NLGE +D + A++ NP+ T+ EL++ Y+ GPDFPTGG+I+G GI AY TGRG I +R
Sbjct: 186 NLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSIMIRC 245
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
K +E +D+ R +++ E+PYQ NK+ L+ KIA+LV K +DGI+ + DES+R G+RI
Sbjct: 246 KHHLEEMDNGKTR--IVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRI 303
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIEL++ +V+N L+R+T+LQ+SF NM+ + D PKQMG+KE+L ++D + V
Sbjct: 304 VIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDVTV 363
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + ++R HI+EG+ + LD++D +I I+R + ++S A + L + F+LSE QA+A
Sbjct: 364 RRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMENFELSEIQANA 423
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL+M LRRLT LER K +E + L+ I+ L+++L++ +LQ+I E+ E+KN++ R
Sbjct: 424 ILEMRLRRLTGLERDKIENEYQELLALIIDLKDILANHDRVLQIIRDELTEVKNKYGDER 483
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN- 620
+ + DAD + D D+IP +++++ ++ GY+KRM +T++ QNRG G+ + + VN
Sbjct: 484 RTEISDADY-DMQDEDLIPVEDIVITMTTNGYIKRMPTDTYHTQNRG--GRGIKGMAVNE 540
Query: 621 -DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + + HD +L F++ G VY + YK+P +R A G P+V +L+L E++ ++
Sbjct: 541 DDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAKGLPVVNLLNLDKDEKVKAL 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+P+ ++L+ +T NG +K+V F+SIR G IAI L GDEL V+ T DD +
Sbjct: 601 VPMKVDHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGVKETTGDDEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+A NG + D +R + R+ G + DG + M A +D
Sbjct: 661 IIAGSNGKAVRFHEDGVRPMGRSASGVKGFNV-DGAVVVGM-----ATSRD--------- 705
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSL 858
G LL VSE+G+GKR + +R G+ + + L +V V
Sbjct: 706 -------GTHLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGDLVSVRAVN--- 755
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI-SVTEP 917
DE ++V+ SG + RI+V I I +R +GV L+ + + +++ E
Sbjct: 756 -----GDEDAMIVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQAEE 810
Query: 918 ETDLFLPSTSDKLA 931
D SDK A
Sbjct: 811 AKDTASEEASDKEA 824
>gi|257789785|ref|YP_003180391.1| DNA gyrase subunit A [Eggerthella lenta DSM 2243]
gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
Length = 932
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/825 (42%), Positives = 529/825 (64%), Gaps = 32/825 (3%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
L +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E G + +P K AR VG+
Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
V+GK+HPHGD+AVYD++VR+AQ FS+R PL+ GHGNFGSID D AAAMRYTE RL+ ++
Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVA- 209
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
LL D+D++TV+F PN+DES +EP++LPAR P LL+NG+ GIAVGMATNIPPHNLGE +
Sbjct: 210 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETI 269
Query: 269 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
D C ++ NP+ T +EL++ +PGPDFPTGG+IMG GI DAY TGRG +TVR K +VE
Sbjct: 270 DATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVE-- 327
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K+ R +++ EIPYQ N+ L+EK+ ELV K L IS+I D +DR G+ I+I+LK+
Sbjct: 328 EGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKD 387
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
A P +V+N LY+ T LQ F M+ ++DG P+ + LKE+L ++ + V+ RR R++L
Sbjct: 388 AIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYEL 447
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
++ +ER HI+EG+++ LDN+D VI I+R + ++ A+ + + F L++KQ AIL+M LR
Sbjct: 448 AKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILEMRLR 507
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RLT LE +K DE K L+E+I + +LS + + +I++E+ E+K +F +PR ++L +A
Sbjct: 508 RLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSPRRTLLSEA 567
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+ LD D+I + M++ +++ GYVKR+ T+ Q RG G S L+ ND + V
Sbjct: 568 -AKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNLKDNDYVEHLFV 626
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
H ++L+FS +G VY + Y++PE +R+A GT +V +L L GE I+++I +F D
Sbjct: 627 ASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSD 686
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
++L+ T +G +KK S++L+ R G+IAI L D L V+ + V M S G
Sbjct: 687 EYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKA 746
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I+ +R++ R+T G + M++ P A +E D+
Sbjct: 747 IMWDEGEVRAMGRDTMG-----------VRGMNVPPIAKVLGMEIAQPDTD--------- 786
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
L ++E G+GKR P++ + + G+ + + L AV + +AE D+++
Sbjct: 787 -LFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKI---VAE----DDEI 838
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+++S+ G R V IS R +GV +M+ ++ + ++ S
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAISS 883
>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
gi|423086521|ref|ZP_17074926.1| DNA gyrase, A subunit [Clostridium difficile 050-P50-2011]
gi|357546725|gb|EHJ28634.1| DNA gyrase, A subunit [Clostridium difficile 050-P50-2011]
Length = 808
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/834 (42%), Positives = 536/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++FKL+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
Length = 812
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/835 (42%), Positives = 544/835 (65%), Gaps = 39/835 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
NV R + EL E SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G+++ KP
Sbjct: 3 NVDNRYIEEELKE----SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKP 58
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
FKK AR+VGEVLGK+HPHGD+AVY ++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 59 FKKSARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRY 118
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+E ++ A LL DID+DT+++ NFD+S EP++LPA+LP LLLNGA GIAVGMATN
Sbjct: 119 TEARMEKIT-AELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATN 177
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGELVD + ALI N + + EL+ Y+ GPDFPTG +I G GI++AY+TGRG+I
Sbjct: 178 IPPHNLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIK 237
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VRGK ++E + K+ + +I+ EIPYQ NK+ L+EKIA LV+ K + ISD+RDES+R G
Sbjct: 238 VRGKVDIE--EQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREG 295
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIE+K+G +P +V+N LY+ T LQ++F M+ +++ P+ + LKE+L ++ R
Sbjct: 296 IRVVIEVKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFD 355
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI++G + L+N+DR+I ++R + + A L +++ ++ Q
Sbjct: 356 VITRRTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQ 415
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A +ILDM L+RLT LER+K +E K + I +L E+LS I +++++E++ELK++++
Sbjct: 416 ARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYN 475
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E+ L + D+I ++E+++ + KGYVKR++ + + Q RG G S
Sbjct: 476 DKRRTQIEEERMEILPE-DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTI 534
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D I D ++ F+D+G VY+ RAY+IP+ ++ + G L I++LS+GE+++
Sbjct: 535 EDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVSD 594
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN--D 736
I + EF ++ +V +T NG IKK SL F +I +G+IAI++ D++ +V +
Sbjct: 595 TIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTK 654
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +A+ +G D IR R+T+G A+ L++GD + S +I + PE
Sbjct: 655 EEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLI---------KNPE 705
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
+L ++E+G+GKR L + + G+I K S + ++ +V V
Sbjct: 706 TD-----------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEV- 753
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
DE+++ ++ +G V R + +IS R +GV +M++ K+ + +
Sbjct: 754 -------TEDEELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801
>gi|310657322|ref|YP_003935043.1| DNA gyrase (type II topoisomerase), subunit A [[Clostridium]
sticklandii]
gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [[Clostridium]
sticklandii]
Length = 817
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/820 (42%), Positives = 534/820 (65%), Gaps = 34/820 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IV +E+ +EM SYI Y+MSV++GRALPDVRDGLKPVHRRILFAM++LGL K ++K
Sbjct: 11 KIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLGLVPEKSYRKS 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG+VLGK+HPHGD AVYD++V++AQDFS RYPL+ GHGNFGSID D AAAMRYTE +
Sbjct: 71 ATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDSAAAMRYTEAK 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
++ L+ LL DID++TV+F N+DE KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 131 MQKLT-LELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 189
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + LI N EAT++++++++ GPDFPTG IMG I DAY TGRG++TVR K
Sbjct: 190 NLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDAYMTGRGKVTVRSK 249
Query: 323 TEVELL-DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRI 381
++E L + KS+ +I+ EIPYQ NK+ ++EKIA+LV++K ++GI+D+RDES+R G+RI
Sbjct: 250 ADIEELPNGKSQ---IIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDESNRDGIRI 306
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VIE++R +P+IV+N+LY+ + LQ FS M+ +++G+PK + ++++L +L+ + +VV
Sbjct: 307 VIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVHYLNHQKNVVR 366
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + KER HI+EG+++ LDN+DRVI+I+R + + S A L +EF LS+ Q+ A
Sbjct: 367 RRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFGLSDIQSQA 426
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM L+RLT LER K +E LM+ I E +L + +L +I+ E+++++ + R
Sbjct: 427 ILDMRLQRLTGLERGKIEEEFAELMKNIAYYESILQDQSILLGIIKDEMLKIREKHGDKR 486
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + +A + +++ +D IP++E+ + + GY+KR+ +T+ Q RG G + R +D
Sbjct: 487 RTEITEA-ADEINILDTIPDEEVTVTFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDD 545
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+ ++ H +L+ ++RG +Y AY+IP+ R A GT +V ++ L E++TS I
Sbjct: 546 FVEKLLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKGTNIVNLIPLEKNEKVTSFIS 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ + + +LVM T G IKK ++ F G+IAI L DEL V+ + +
Sbjct: 606 IRDVPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDELINVKTTDGEQDFII 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ GM I +R + R G A+RL D++ +M+++
Sbjct: 666 VTKKGMAISFDEKQVRDMGRAAMGVRAIRLAPDDEVVAMELV------------------ 707
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
LL +SE G+GKR +R G+ YK S + +VG A+
Sbjct: 708 ---DPNKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISEK----TGILVG---AKA 757
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DE++++++ G++ R+ V ISI +R GV +MR +
Sbjct: 758 VYKDEEIMIINSDGSLIRMSVNQISILSRVTSGVKVMRTD 797
>gi|414160150|ref|ZP_11416421.1| DNA gyrase subunit A [Staphylococcus simulans ACS-120-V-Sch1]
gi|410878800|gb|EKS26670.1| DNA gyrase subunit A [Staphylococcus simulans ACS-120-V-Sch1]
Length = 894
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/855 (40%), Positives = 540/855 (63%), Gaps = 32/855 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT+NF+ N+D +++EP +LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKLA-TELLRDINKDTINFIDNYDGTEREPEVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+++ + +L HNP+ T+ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NMTEVINGVLSLSHNPDITIAELMEDITGPDFPTAGLILGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A L++ FKLSE+QA A
Sbjct: 365 RRTEYNLKKAEDRAHILEGLRIALDHIDEIITTIRESDTDKVAMERLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +L +L+ + +LQL+ E+IE++ R+ R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNDLIAYIEELRAILADEEKLLQLVRDELIEVRERYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLDHIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQIVTLSTHDHVLFFTNQGRVYKLKGYEVPELSRQSKGIPVINAIELENDEVISTMIA 604
Query: 682 VSEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + D FL+ T +G +K+ SL+ FS I G IAI DEL VR V
Sbjct: 605 VKDLEKEDAFLIFATKHGIVKRSSLSNFSHINRNGKIAINFRDEDELVAVRLTDGSKDVL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + +I ++R L R G + L++GD++ + +
Sbjct: 665 LGTSRASLIRFKESLLRPLGRTAAGVKGITLREGDEVIGLAV------------------ 706
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
G S +L V+E+G+GKR PL +R ++ G G K + V ++
Sbjct: 707 -ANGDSEDEVLVVTENGYGKRTPLEEYR---VSNRGGKGIKTATITEKNGDIVCITTVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
GE D +++V+ G + RI V DIS R A+GV L+RL + + + + EPE +
Sbjct: 762 -GEED--LMIVTNHGVIIRIDVGDISQNGRSAQGVRLIRLSDEQFVSTVAKVQ-EEPEDE 817
Query: 921 LFLPSTSDKLATESG 935
L S + E+G
Sbjct: 818 LEGTSEDETEPGENG 832
>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
Length = 824
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/840 (42%), Positives = 537/840 (63%), Gaps = 33/840 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITQEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +K K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-AKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R +V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLNVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K DE K L+ I L+ +LSS Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILSSEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V + +
Sbjct: 607 ERVQEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDHLISVNVTNGSQDILLG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S + +R + R G ++L GD + ++ A
Sbjct: 667 TKLGIAIRFSENDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNA----------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G GKR ++ L + G G K F ++ V V E
Sbjct: 710 -DESEAQVFTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVSV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I +E E D
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIEED 820
>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
difficile NAP07]
gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
difficile NAP07]
Length = 808
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/834 (42%), Positives = 535/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++F L+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
gi|386042354|ref|YP_005961159.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
gi|386045641|ref|YP_005963973.1| A subunit [Listeria monocytogenes J0161]
gi|386048937|ref|YP_005966928.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
gi|386052280|ref|YP_005969838.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1998]
gi|404282437|ref|YP_006683334.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2372]
gi|404409246|ref|YP_006694834.1| DNA gyrase subunit A [Listeria monocytogenes SLCC5850]
gi|404412113|ref|YP_006697700.1| DNA gyrase subunit A [Listeria monocytogenes SLCC7179]
gi|405756994|ref|YP_006686270.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2479]
gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
gi|345532632|gb|AEO02073.1| A subunit [Listeria monocytogenes J0161]
gi|345535588|gb|AEO05028.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
gi|346422783|gb|AEO24308.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
gi|346644931|gb|AEO37556.1| DNA gyrase, A subunit [Listeria monocytogenes Finland 1998]
gi|404229072|emb|CBY50476.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC5850]
gi|404231939|emb|CBY53342.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2372]
gi|404234876|emb|CBY56278.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2479]
gi|404237812|emb|CBY59213.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC7179]
gi|441469554|emb|CCQ19309.1| DNA gyrase subunit A [Listeria monocytogenes]
gi|441472686|emb|CCQ22440.1| DNA gyrase subunit A [Listeria monocytogenes N53-1]
Length = 842
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/835 (42%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL H+PE T+++L+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
DSM 15829]
gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
DSM 15829]
Length = 945
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/833 (41%), Positives = 528/833 (63%), Gaps = 38/833 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P +L EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM+E + +P KK A
Sbjct: 99 PTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSAWT 158
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEV+GK+HPHGD+++YD++VRMAQ+FS+R PL+ GHGNFGSID DP AAMRYTE RL
Sbjct: 159 VGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRLTH 218
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
+ ML D+D++TV+ PN+DES +EPS+LPAR P LL+NG++GIAVGMATN+PPHNL
Sbjct: 219 AAMQML-RDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNLA 277
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E+ +C +I NP+AT+++L++ +PGPDFPTGG+IMG GI DAY TGRG IT+R K V
Sbjct: 278 EVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKVHV 337
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
E + + R ++I EIPYQ NK +L E+IA+ V K ++GISD+RDES+R GMRIVI+L
Sbjct: 338 ENV-GRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVIDL 396
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
K GA P +V+N+LY+ T LQ SF + ++DG P+ + L+E++ +++ + +V RR +
Sbjct: 397 KSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRTQ 456
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F L + +R HI+EG+++ +DN+D V+ I+R + + A + + F + + Q +AIL M
Sbjct: 457 FDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFGIDDIQGEAILQM 516
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT L R++ + L + I +LL+ + +L++I++E+ E+ RFS R + +
Sbjct: 517 RLRRLTGLAREELAAQIAELYKSIEYYRDLLAHPQKLLEVIKEELTEISTRFSDKRRTQI 576
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
LD D+I ++M++ ++ Y+KR+ T+ Q RG G L+ ND + +
Sbjct: 577 SALGVQNLDIEDLIAEEDMVITVTHASYIKRLPVATYKSQKRGGKGVQGLSLKDNDFVEN 636
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
V HD+VL+F+++G VY + +++P +R+A G+ L+ +L LS+GE T++I +F
Sbjct: 637 MFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHARGSALINVLPLSEGEYPTAVITTRDF 696
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
++ L+ T +G +KK +++ + R G+IAI L GDEL VR + V + S
Sbjct: 697 PAEEHLMFATKSGMVKKTAMSDYDKSRRDGLIAINLKDGDELVNVRRVKESEYVILCSSA 756
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
G I+ IR R T G + LKDG M M+I SN KG
Sbjct: 757 GKAIMFEESDIRPTGRGTSGVRGITLKDGATMLGMEI-----------------SNGKGD 799
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA----EDRLAAVFVVGFSLAED 861
LL V+E G+GKR P+S + PL + G +G A + +L+A VVG
Sbjct: 800 ----LLVVTEHGYGKRTPVSEY---PLQKRGGLGVNTIAMTQKKGKLSACRVVG------ 846
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
++++VS+ G + R++ +DIS+ +R +GV +M L S + + + + +
Sbjct: 847 --PQHELMIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMHI 897
>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 813
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/818 (43%), Positives = 530/818 (64%), Gaps = 32/818 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ VEL E+M +Y+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 9 IIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEV+GKFHPHGD+A+YD+LVR+AQDFS RYPL G GNFGSID D AAAMRYTE ++
Sbjct: 69 RVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEVKM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI++DTV+F+PNFDE +KEP++LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 129 SKIAKEML-RDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LG+ +D A ++NPE +++EL + + GPDFPTG I+G GI AY+TGRG++ +R
Sbjct: 188 LGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLKLRAVA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E K R +I+ EIPYQ NK+ L++KIAE V++K L+GISDIRDESDR GMRIVI
Sbjct: 248 RIEPF--KKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A+ +IV+N+LY+ T L+++F + ++DG PK + LKE+++ ++ + VV RR
Sbjct: 306 EVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVVRRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R+HIVEG+++ +DN+D +I+I+R + N ++F L++ Q+ AIL
Sbjct: 366 TKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE +K E K L E+I +L+ + ++ +IE+E++E+K +++ R +
Sbjct: 426 DMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADDRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G+ D ++I +++L++++ GY+KR+ NT+ +QNRG G S G + ND +
Sbjct: 486 KIV-PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAGNTKENDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H+ +L F++ G VYS + Y+IPE +R + G ++ ++SLS E+IT I+ +S
Sbjct: 545 QKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSSDEKITDIMELS 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
LV T NG IKK LF++I+ GIIAI L GD L +R + + +
Sbjct: 605 NLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLENGDRLVSIRQIDKPCDIIVTT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM I + IRS+ RN RG A+RL + DK+ SM+I+ +
Sbjct: 665 KKGMAIKFASSDIRSMGRNARGVRAIRLGEDDKVVSMNIVEDEV---------------- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
+L+ V+ +G GK+ ++F G+ +K + + + V + +L
Sbjct: 709 -----YLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK-DVVATLPANL----- 757
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D+ +++VS G + RI RDIS R GV L LE
Sbjct: 758 -DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLE 794
>gi|420427330|ref|ZP_14926375.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-9]
gi|393042263|gb|EJB43274.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-9]
Length = 826
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 538/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSIKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGLFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISG------------ 709
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|355629838|ref|ZP_09050609.1| DNA gyrase, A subunit [Clostridium sp. 7_3_54FAA]
gi|354818986|gb|EHF03444.1| DNA gyrase, A subunit [Clostridium sp. 7_3_54FAA]
Length = 850
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/852 (41%), Positives = 533/852 (62%), Gaps = 45/852 (5%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV ++ ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ +S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI++DTV+F PNFDE++KEP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E +L+E+LE + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR ++E L + R +++ E+PY NK+ L+EKIAELV+ K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVYDIETLANGKNR--IVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMR+ IEL+R + ++++N L + T LQ +F M+ +++ +P+ + LK++L+ +
Sbjct: 300 ESNREGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI+EG++ LD++D VI+I+R + + + A A L + F
Sbjct: 360 LQHQEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LSE QA AI+DM LR LT LER+K +E + LM +I +L+ +L+ K +L +I +E+I
Sbjct: 420 ALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEKKLLGVIREEIIV 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP+D++++A++ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDERRTAI-GYDEYDMSAEDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D ++ H +V++F++ G VY +AY+IPE R A GT +V +L L
Sbjct: 537 GIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+ITSII + EF D++L M T NG +KK SL + ++R G+ AI L DEL V
Sbjct: 597 MPGEKITSIIAMKEFEDDKYLFMATRNGMVKKTSLKEYENVRKNGLQAIVLRENDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + ++ GM I +R R + G + M+ + D++ M +
Sbjct: 657 KRTDNTQDIFLVTKKGMCIRFHETDVRVTGRVSMGVIGMKFDEDDEVIGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF--SAEDRL 848
S G LL SE G+GKR P+ F G+ YK D +
Sbjct: 709 -------------SSQGECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGDLI 755
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
A V ++ +++L++ G + ++ V DISI R GV LM ++ I
Sbjct: 756 GAKLV---------DNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAV 806
Query: 909 ASLISVTEPETD 920
AS+ V E E +
Sbjct: 807 ASIAKVRESENN 818
>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 842
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/835 (41%), Positives = 548/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL H+PE ++++L+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I IR + R G +RL++GD++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+ +L V+E G+GK+ P + + PL G +G K V +
Sbjct: 708 NEK---------VLIVTEKGYGKQTPAAQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ + K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806
>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 835
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/834 (41%), Positives = 539/834 (64%), Gaps = 37/834 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
IVP + +EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM E+GL +KK A
Sbjct: 18 IVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKEMGLKHNTAYKKSA 77
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD+AVY ++VRM QDFSLRYP+I G GNFGSID D AAAMRYTE R+
Sbjct: 78 RIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDGDFAAAMRYTEVRM 137
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ +++ ML+ D+D++TV+F+PN+D S KEP +LP +LP+LL+NG++GIAVGMATNIP HN
Sbjct: 138 DTITDEMLV-DLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGIAVGMATNIPAHN 196
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E+ D L LI + E ++ E+++Y+ GPDFPTG +I+G GI D GRG + +R KT
Sbjct: 197 IVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIKDYMEKGRGSVKIRAKT 256
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + KS R +I+ EIPYQ NK+ L+ IA+LV++K +DGI+D+RDESDR G+RIVI
Sbjct: 257 EIE--EVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDESDRDGIRIVI 314
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A+ +V+N LY+ T +Q SF M+ +++ +PK M +KE+L ++ R ++ RR
Sbjct: 315 EIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEILIHHIEHRKVIIIRR 374
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + + R HI+EG+ + +DN+D VI+I++E+ A +L + +L++ Q +AIL
Sbjct: 375 TKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSKLRLTKIQTEAIL 434
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
+M +R+LT L+RK+ DE L+ I KL +L+ K +L +I+ E +++K ++ R +
Sbjct: 435 EMKIRQLTGLKRKEIDDEYLELIRLIEKLRSVLADPKKVLDIIKNEALDIKRKYGDKRRT 494
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++ A++ + D+I +E+ + +S GY+KR+ +T+ Q+RG G + R D +
Sbjct: 495 QIQAAEA-DFNIEDLIQEEEVAVTMSHAGYIKRIPLDTYKAQHRGGRGIAAMNTREEDFV 553
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG-ERITSIIPV 682
+ + +H ++L+F+ RG +Y R Y+IPE R + G +V +L L E+IT+ IP+
Sbjct: 554 ENLFITSSHSYMLFFTTRGRLYWMRIYEIPEGARTSKGKAIVNLLQLQGTEEKITAAIPI 613
Query: 683 S----EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
E+ D++L+M T NG IKK++L+ F + R GIIAI+L GD L V+ +
Sbjct: 614 RSFNPEYTKDEYLLMCTRNGIIKKIALDKFINPRKRGIIAIKLEDGDILTEVKAINKNPE 673
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
V +A++ G I IR + R RG + LK GD++ M++ +P+D
Sbjct: 674 VVIATKKGSSIRFKESDIRVIGRAGRGVKGIELKKGDEVIGMEVF----------SPDD- 722
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
L +SE+G+GKR + +R G+I + S + ++G
Sbjct: 723 ----------VFLSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERNG----NMIGIKK 768
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A DG E+V++++Q+G R++V IS+ R +GV L+RL+ K+ + + +
Sbjct: 769 ANDG---EEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACV 819
>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
gi|210158685|gb|EEA89656.1| DNA gyrase, A subunit [Collinsella stercoris DSM 13279]
Length = 929
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 516/822 (62%), Gaps = 38/822 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E +EM S+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ +P KK A VG
Sbjct: 76 EFGKEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVG 135
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EV+GK+HPHGD+AVYD++VR+AQ FS+R PLI GHGNFG+ID D AAAMRYTE RL A
Sbjct: 136 EVIGKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRL-AKP 194
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+ +DTV++ PN+DES EP+ LPAR P LL+NG+ GIAVGMATNI PHN+ E
Sbjct: 195 AMELLRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEA 254
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
++ C LI +P+AT+ EL++ MPGPDFPTG LIMG GI +Y TGRG ITVR K VE
Sbjct: 255 IEATCYLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVE- 313
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
+K+ R ++ EIPY NK L EKIA LV K ++GISD+RDES + G+R+VIELK+
Sbjct: 314 -STKTGRSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKK 372
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
G P +V+N+LY+ T+LQ++F N + +++G PK + L+E+LQ ++D + VV RR RF
Sbjct: 373 GVIPQVVLNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFD 432
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + + R HI+EG ++ LD++D VI I+R + +++ AS+ L + F S +Q AIL+M L
Sbjct: 433 LKKAQARAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKL 492
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RRLT LER K +E L I E+LL+ + IL +I++E+ E+ +F R + +
Sbjct: 493 RRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGDKRRTQITH 552
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
+ LD D+I +++M++ I+ GYVKR+ + Q RG G S L+ +D + +
Sbjct: 553 VEK-DLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMF 611
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+ H++VL+FS +G VY + +++PE TR A GT +V +L DGE+I S+I F
Sbjct: 612 IASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCRAFPE 671
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
D++L+ T +G +KK ++ + R G+IAI + GD L VR D + MA+ G
Sbjct: 672 DEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGDRLLGVRRVKPGDKIIMATTAGK 731
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807
I+ D +R+ R+T G + +K G ++ M+I +N G
Sbjct: 732 AIMFCEDQVRATGRDTSGVRGITMKGGTEVLGMEI-----------------TNGSGE-- 772
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR---LAAVFVVGFSLAEDGES 864
L V+E G+GKR P++ + + NR G Y +R LAA+ VVG
Sbjct: 773 --LFVVTEHGYGKRTPVAEYPE--QNRGGQGVYTIQMTERKGALAAMKVVG--------P 820
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
++ +++++ TV R+K +IS R +GV +M ++ ++
Sbjct: 821 QHELFIITENATVIRVKTAEISQTGRATQGVKMMSVDEGDRV 862
>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
Length = 813
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/818 (43%), Positives = 529/818 (64%), Gaps = 32/818 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+L ++M +Y+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 9 IIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEV+GKFHPHGD+A+YD+LVR+AQDFS RYPL G GNFGSID D AAAMRYTE ++
Sbjct: 69 RVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMRYTEVKM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI++DTV+F+PNFDE +KEP++LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 129 SKIAKEML-RDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LG+ +D A + NPE +++EL E + GPDFPTG I+G GI AY+TGRG++ +R
Sbjct: 188 LGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLKLRAVA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E K R +I+ EIPYQ NK+ L++KIAE V++K L+GISDIRDESDR GMRIVI
Sbjct: 248 KIEPF--KKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A+ +IV+N+LY+ T L+++F + ++DG PK + LKE+++ +++ + +VV RR
Sbjct: 306 EVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVVRRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF L + ++R+HIVEG+++ +DN+D +I+I+R + N + F L++ Q+ AIL
Sbjct: 366 TRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNERFGLTDLQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE +K E K L E+I +L+ + ++ +IE+E++E+K +F+ R +
Sbjct: 426 DMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLIGVIEEEILEIKEKFADDRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G+ D ++I +++L++++ GY+KR+ NT+ +QNRG G S G + ND +
Sbjct: 486 KIV-PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAGNTKENDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H+ +L F++ G VYS Y+IPE +R + G ++ I+SL+ E+IT I+ +S
Sbjct: 545 QKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQAIINIISLATNEKITDIMELS 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
E + + LV T G IKK LF++I+ GIIAI L D L +R + + + +
Sbjct: 605 ELSDNSQLVFQTEKGKIKKTDAQLFTNIQRNGIIAISLEDDDRLVSIRQIDHPCDIIVTT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
Q GM I + IRS+ RN RG A+RL D + SM+I+ +
Sbjct: 665 QKGMAIKFASSDIRSMGRNARGVRAIRLSKDDNVVSMNIVEDEV---------------- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
+LL V+ +G GK+ ++F G+ +K + E V + +L
Sbjct: 709 -----YLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKIT-EKTGNVVATLPANL----- 757
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D+ +++VS G + RI RDIS R GV L LE
Sbjct: 758 -DDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLE 794
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 674 ERITSIIP-VSEF------AGDQFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPG 724
+R T I+P EF + L+ LT +GYIK++ +N + GI A
Sbjct: 482 DRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAGNTKEN 541
Query: 725 DELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
D ++ + + + + G V +C I SR +RG A ++II
Sbjct: 542 DFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQ-----------AIINIIS 590
Query: 785 AALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844
A ++ + E S S L+F +E G K+ F + N G+I
Sbjct: 591 LATNEKITDIMELSEL----SDNSQLVFQTEKGKIKKTDAQLFTNIQRN--GIIAISLED 644
Query: 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
+DRL ++ + D D +++ +Q G + DI R ARGV +RL
Sbjct: 645 DDRLVSIRQI------DHPCD--IIVTTQKGMAIKFASSDIRSMGRNARGVRAIRLSKDD 696
Query: 905 KIQSASLI 912
+ S +++
Sbjct: 697 NVVSMNIV 704
>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
Length = 826
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/821 (43%), Positives = 537/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSNERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVI-------------- 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 708 ------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
Length = 823
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/838 (42%), Positives = 537/838 (64%), Gaps = 33/838 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITQEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T++EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + +K K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-AKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I++E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKEELEDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERIHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVSVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S +R + R G ++L GD + ++ A
Sbjct: 667 TKLGIAIRFSESDVRLMKRAAHGVRGIKLNTGDVVVGAGVLNA----------------- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G GKR ++ L + G G K F ++ V V E
Sbjct: 710 -DESEAQVFTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYA-RGVILMRLELSGKIQSASLISVTEPE 918
+D++V+L+S+ G + R + DI+++ A GV L+ K+ S ++I E E
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818
>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
Length = 877
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/870 (41%), Positives = 531/870 (61%), Gaps = 63/870 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L EEM SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AMHEL + +KK AR
Sbjct: 9 LPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNRAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ LLADID++TV+F PN+D S+KEP +LPAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 RIGHE-LLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE+VD L+ +PE L+ L+E + PDFPT GLI G G+ + YRTGRGR+ +R +T
Sbjct: 188 GEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVVMRARTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E + S R +I+ E+PYQ NK L+E+IAELV K ++GIS+IRDESD+SGMR+VIE
Sbjct: 248 IEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSGMRVVIE 307
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR P +V+N+LY+ T LQ +F NMV ++DG+P+ + LK++L FL+ R VV RR
Sbjct: 308 LKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTRRT 367
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA------------------SA 486
F+L + ++R HI+EG+ V L N+D +I +++ AP+ + A S
Sbjct: 368 IFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLVEEMLSR 427
Query: 487 ALKDE----------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
AL D +KLS+ QA AIL++ L+RLT LE+ K V E + +M+ I
Sbjct: 428 ALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDLIT 487
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I +I +E+ ++N+F PR S + + +++ D+I ++M++ +S
Sbjct: 488 DLLDILARPERITAIIVEELTAIRNQFGDPRRSEIV-LSTAEINIEDLITPEDMVVTLSH 546
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY KR + Q RG GK ++ D + V HD VL FS RG Y + Y
Sbjct: 547 TGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAYWLKVY 606
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
++PE TRN+ G P+V + L +GE+IT+++PV F + F+ M T G +KK +L F++
Sbjct: 607 EVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMATSEGTVKKTALTAFAN 666
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIA+ L GD L V + V + S G + + +R + R RG M
Sbjct: 667 PRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPMGREARGVRGMT 726
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+DG ++ +M + KG + +L +E+G+GKR P++ + +
Sbjct: 727 LEDGQRVIAMLV-------------------AKGETQS-VLTATENGYGKRTPVAEYTRH 766
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I + S DR +VG L + ++V+L+S + R KV+DI R
Sbjct: 767 GRGTKGMIAIQTS--DRNGK--LVGAVLV---DPTDEVMLISTGAVLIRTKVQDIRELGR 819
Query: 891 YARGVILMRLELSGKIQSASLISVTEPETD 920
+GV L+ L+ + ++ + E D
Sbjct: 820 ATQGVTLINLDEGTYLAGIEKVAESGAEAD 849
>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
Length = 886
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 542/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + +R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
7454]
gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
7454]
Length = 813
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/818 (43%), Positives = 530/818 (64%), Gaps = 32/818 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ VEL E+M +Y+ YSMSV++ RALPDVRDGLKPVHRRIL+ M LGL KP +K A
Sbjct: 9 IIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVGEV+GKFHPHGD+A+YD+LVR+AQDFS RYPL G GNFGSID D AAAMRYTE ++
Sbjct: 69 RVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEVKM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ ML DI++DTV+F+PNFDE +KEP++LP+R P LL+NG++GIAVGMATN+ PHN
Sbjct: 129 SKIAKEML-RDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LG+ +D A ++NPE +++EL + + GPDFPTG I+G GI AY+TGRG++ +R
Sbjct: 188 LGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLKLRAVA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E K R +I+ EIPYQ NK+ L++KIAE V++K L+GISDIRDESDR GMRIVI
Sbjct: 248 RIEPF--KKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR ++ +IV+N+LY+ T L+++F + ++DG PK + LKE+++ ++ + VV RR
Sbjct: 306 EVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVVRRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R+HIVEG+++ +DN+D +I+I+R + N ++F L++ Q+ AIL
Sbjct: 366 TKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RL+ LE +K E K L E+I +L+ + ++ +IE+E++E+K +++ R +
Sbjct: 426 DMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADDRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G+ D ++I +++L++++ GY+KR+ NT+ +QNRG G S G + ND +
Sbjct: 486 KIV-PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAGNTKENDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H+ +L F++ G VYS + Y+IPE +R + G ++ ++SLS E+IT I+ +S
Sbjct: 545 QKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSSDEKITDIMELS 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
LV T NG IKK LF++I+ GIIAI L GD L +R + + +
Sbjct: 605 NLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLEDGDRLVSIRQIDKPCDIIVTT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM I + IRS+ RN RG A+RL + DK+ SM+I+ +
Sbjct: 665 KKGMAIKFASSDIRSMGRNARGVRAIRLGEDDKVVSMNIVEDEV---------------- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
+L+ V+ +G GK+ ++F G+ +K + + + V + +L
Sbjct: 709 -----YLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK-DVVATLPANL----- 757
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D+ +++VS G + RI RDIS R GV L LE
Sbjct: 758 -DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLE 794
>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 832
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/853 (42%), Positives = 536/853 (62%), Gaps = 37/853 (4%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
N ++ TV N+ V++ +EM YI Y+MSV++GRALPDVRDGLKPVHRRIL+AMH
Sbjct: 4 NETMLTVAHNLRN----VKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMH 59
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
++G++ KPF+K AR+VGEVLGK+HPHGD++VYD++VRMAQDFS RY + G GNFGS+D
Sbjct: 60 QMGMTPDKPFRKSARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVD 119
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ +S M L DI+++TV+F+ NFD S++EP +LP+R P LL+NG+
Sbjct: 120 GDGAAAMRYTEARMSRISLEM-LRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQ 178
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMATNIPPHNLGE++D A I +P+ ++ +L+ ++ GPDFPT G+I+G GI +A
Sbjct: 179 GIAVGMATNIPPHNLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREA 238
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y TGRGRI +R K V+ + +K K+ ++I EIPY NK+ L++KIAELV++K ++GI+D
Sbjct: 239 YETGRGRIKIRSKVAVKNM-TKGKKQ-IVISEIPYMVNKAKLIQKIAELVKDKRVEGITD 296
Query: 370 IRDESD-RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEV 428
IRDE+D + G+RIV+ELKR + +IV+N LY+ T LQ ++ + ++DGQPK + LK++
Sbjct: 297 IRDETDLKHGIRIVVELKRDTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQI 356
Query: 429 LQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL 488
L ++ + ++ RR +F L + + R HI+EG + LDN+D VI+I+RE+ A L
Sbjct: 357 LHYYVAHQKEIIVRRTKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHL 416
Query: 489 KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQ 548
D F L++ QA AILDM L+RLT LER+K E LM++I + + +L+ K +L +I+
Sbjct: 417 MDRFALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKLVLGIIKD 476
Query: 549 EVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRG 608
E+ E+K+++ R + D D D D+I +E+++ ++ GYVKR+ +T+ QNRG
Sbjct: 477 ELTEIKDKYGDDRRTSF-DIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAADTYRAQNRG 535
Query: 609 TIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL 668
G S R ND + HD +L+F+++G Y +AY+IP R + GT +V IL
Sbjct: 536 GKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGTAIVNIL 595
Query: 669 SLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELK 728
L E IT++I V F D++ VM T +G IKK ++ + S R GI I L GDEL
Sbjct: 596 QLDPDESITTMIQVKTFEADKYFVMATRHGLIKKTAMTDYESSRKNGINGINLRDGDELI 655
Query: 729 WVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
V+ + + V M + G I + + R + G + L+ D + MD++ A
Sbjct: 656 KVQISDDTEDVVMGTHLGYAIRFKVRDVNATGRMSMGVRGIGLRADDHVVGMDLLIA--- 712
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
+NV L V+E G+GKR +R G+ YK + +
Sbjct: 713 ----------DNNV--------LCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTKK--- 751
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
+VGFS+ EDG ++++++ G V ++K DIS R +GV LM+L+ +I +
Sbjct: 752 -TGNLVGFSVLEDG---GEIMMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIAT 807
Query: 909 ASLISVTEPETDL 921
+ EP D+
Sbjct: 808 ICKVQNEEPLDDV 820
>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
manganoxydans SI85-9A1]
gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
manganoxydans SI85-9A1]
Length = 947
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/889 (41%), Positives = 546/889 (61%), Gaps = 73/889 (8%)
Query: 75 TVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 134
T P I + + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AMH +GL+
Sbjct: 7 TTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHGMGLT 66
Query: 135 SRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAA 194
+P++K A VVGEV+GK+HPHGD+++YD+LVRMAQD+SLR PLI G GNFGSID DP A
Sbjct: 67 FNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSIDGDPPA 126
Query: 195 AMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVG 254
AMRYTE RL +S+A LLADID++TVNF N+D ++EP +LPAR P LL+NG+ GIAVG
Sbjct: 127 AMRYTETRLYKVSDA-LLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVG 185
Query: 255 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314
MATNIPPHNLGE+VD A+I NP TL+EL+ ++PGPDFPTG +++G GIL AY TGR
Sbjct: 186 MATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSAYSTGR 245
Query: 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDES 374
G I +RGK VE + ++ R ++I E+P+Q NKS ++EK+A+LV +K ++GISDIRDES
Sbjct: 246 GSILMRGKAHVEPM--RNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIRDES 303
Query: 375 DRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLD 434
DR G R+V+ELKR A +++N LYR T LQ++F NMV + G+P+QM L ++L AF+
Sbjct: 304 DRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSAFIS 363
Query: 435 FRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------ 488
FR VV RR ++ L + +ER H++ G+ + + N+D VI+++R AP +TA L
Sbjct: 364 FREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTRAWE 423
Query: 489 -KD-------------------EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQ 528
KD ++LSE QA AILD+ L+RLT L R + DE + E+
Sbjct: 424 AKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKIGEE 483
Query: 529 ILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAI 588
I + E+LSSR + ++I++E+I +++ F+TPR + L + + +DD D+IP ++M++ +
Sbjct: 484 IREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEG-AADMDDEDLIPREDMVVTV 542
Query: 589 SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSA 647
S GY+KR+ T+ Q RG G++ L+ + D+++ V H VL+FS RGIVY
Sbjct: 543 SHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKE 602
Query: 648 RAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV---SEFAGDQFLVMLTMNGYIKKVS 704
+ +++P + + G L+ +L L GERITSI+P+ + A + ++ T G +++
Sbjct: 603 KVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRRNK 662
Query: 705 LNLFSSIRTTGIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRN 762
L+ F+ + G IA++L GDE+ V C+ DD V + + +G I + D+ RN
Sbjct: 663 LSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAGRN 722
Query: 763 TRGSVAMRLKDGDKMASM------DIIPA--------------ALHKDLERTP---EDSH 799
+ G + L +GD++ SM D PA A DL P E+
Sbjct: 723 SVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEEGA 782
Query: 800 SNVK---------GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
+V ++ +L VSE G+GKR FR + G+ S +
Sbjct: 783 GDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQ 842
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ GF + ES +Q++LV+ G + R+ V I R RGV + +
Sbjct: 843 -LMAGFPV----ESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFK 886
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIG---------KSVGKLRVNDAMSDFIVCRAH 632
+EM+L +SE GY KR F + RG G +G+L M+ F V +
Sbjct: 799 EEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQL-----MAGFPV-ESG 852
Query: 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
D +L +DRG + I R G V I +DGER+ S+ + + D+
Sbjct: 853 DQILLVTDRGQLIRVPVEGIRTAGRATRG---VTIFKTADGERVVSVERIPDQGADE 906
>gi|420145138|ref|ZP_14652613.1| DNA gyrase subunit A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403287|gb|EJN56545.1| DNA gyrase subunit A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 853
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/830 (42%), Positives = 529/830 (63%), Gaps = 39/830 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L + M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M ELG++ KP+KK
Sbjct: 9 RIQDVNLAKTMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GKFHPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT+++ N+D ++KEP +LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 129 MSKIATEML-RDINKDTIDYQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ L L+ NP+AT +L+E +PGPDFPTGGL+MG GI AY TG+G IT+R K
Sbjct: 188 NLAEVISGLHLLMDNPDATTADLMEAIPGPDFPTGGLVMGKSGIRRAYETGKGTITLRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE++ + K+ + +I+ EIPY NK+ LVE+IAEL +K L+GI+D+ DESDR GMRIV
Sbjct: 248 TEIQ--EEKNGKQRIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDRDGMRIV 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R S+V+N+LY+LT +Q+SF NM+ I+D P+ + LKE+LQ +L + V+ R
Sbjct: 306 IDIRRDMSASVVLNNLYKLTPMQTSFGFNMLAIVDNTPRLLSLKEILQYYLKHQEQVIRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + K R HI+ G+ + LD++D +IRI+R + + A + L + ++L +KQA AI
Sbjct: 366 RTEFDLRKAKARAHILAGLRIALDHIDEIIRIIRSSKTGEVAKSLLIERYELDDKQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E LM++I +++L+ + I +I QE++E++N+F R
Sbjct: 426 LDMRLVRLTGLERDKVEAEYAELMKKIADYQDILAKPERIHNIIYQELLEIQNKFGDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ ++ GY+KR+ + F QNRG G + +D
Sbjct: 486 TELLVGEVLSLEDEDLIEEEDVVITLTHNGYIKRLPASEFKTQNRGGRGIQGMGMHDDDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + HD +L+F++ G VY A+ Y+IPE R A G P++ +L + GERI +++ V
Sbjct: 546 IEHLVFTSTHDMLLFFTNTGKVYQAKGYEIPEYGRTAKGIPVINLLEIDSGERIQTVVNV 605
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ A D +L+ T G K+ +++ F +IR+ G+ AI L DEL V + +
Sbjct: 606 AAGASDNYLMFTTREGVTKRTAVSEFHNIRSNGLKAITLKESDELINVCLTDGKQNIIIG 665
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G + + +RS+ R+ G +RL++GD + DI+
Sbjct: 666 THLGYAVSFAETAVRSMGRSATGVRGIRLREGDYVVGSDIL------------------- 706
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFSL 858
S +L +SE G+GKR P + + P+ G G K SA++ LA + V
Sbjct: 707 --SPDSEVLIISEKGYGKRTPAAQY---PIKGRGGKGIKTVNVSAKNGPLAGLATV---- 757
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
+ DE ++L++ +G V R VRD+S R GV L+R++ K+ +
Sbjct: 758 ----KGDEDIMLITNTGVVIRFHVRDVSQTGRATLGVRLIRVDDEAKVAT 803
>gi|418281873|ref|ZP_12894671.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21202]
gi|418559558|ref|ZP_13124097.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21252]
gi|365172161|gb|EHM62891.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21202]
gi|371974736|gb|EHO92053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21252]
Length = 887
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/821 (42%), Positives = 534/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
Length = 812
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/832 (43%), Positives = 538/832 (64%), Gaps = 38/832 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ + + SY+ YSMSV++GRALPDVRDGLKPVHRRIL+AM+++G++S P+KK
Sbjct: 2 QVIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKS 61
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD AVY++LVRMAQ+FS+R PLI G GNFGSID D AAAMRYTE R
Sbjct: 62 ARIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEAR 121
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E LL DID+DTV+F+PN+D ++KEP +LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 122 LTKIAEE-LLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPH 180
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L +I N E L+++L+++ GPDFPTGG+I G GIL+AY++GRG I +R K
Sbjct: 181 NLGELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAK 240
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R ++I E+PYQ NK+ L+EKI+ELV++K +DGIS+IRDESDR G+R+V
Sbjct: 241 HHIE---HRGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVV 297
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ A I++N+LY+ T +Q SF NM+ ILD +PK L E+L F+ FR +VV R
Sbjct: 298 IELKKDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIR 357
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L + K+R HI+EG+++ L N+D V+ I++ + S+ A L + F LSE QA AI
Sbjct: 358 RTIYELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIERFDLSEVQAQAI 417
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LE K E L E+I L +L + +I++E +E++ +++ R
Sbjct: 418 LDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEESVLNNVIKEEFLEIRKKYANERK 477
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D +D D+IPN++M++ I+ +GYVKR+ T+ QNRG GK ND
Sbjct: 478 TEIV-DDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKTYERQNRGGKGKKALTTYENDF 536
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ DF + +AHD ++ +++G ++ + YKIPE +R + G +V +++L E+I +II
Sbjct: 537 IEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKGKAIVNLINLDKDEKIQTIIKT 596
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD-LVAM 741
S+F ++ L T NG +K+ +L+ F +IR+TG+ AI + DEL + DD + +
Sbjct: 597 SDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTAKIVKEDDKYLFI 656
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHS 800
++ GM I D +R + RN RG + K +GD +++ A +D ++
Sbjct: 657 VTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGD-----EVVGALSLRDEKQE------ 705
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSL 858
+L VSE G GKR ++R G+I K + + D + V
Sbjct: 706 ---------ILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLVGVVAT----- 751
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
E + ++L++ G + R+ + IS + +GV L+RL+ K+ S +
Sbjct: 752 ----EENHDLMLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVA 799
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 34/217 (15%)
Query: 585 LLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF-SDRG 642
L ++ G VKR + F N+++ G + K +D + + + D L+ + +G
Sbjct: 605 LAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDK---DDELVTAKIVKEDDKYLFIVTKKG 661
Query: 643 IVYSARAYKIPECTRNAAGTP----------LVQILSLSDGERITSIIPVSEFAGDQFLV 692
+ + E RNA G +V LSL D ++ I+ VSE
Sbjct: 662 MAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQ--EILSVSE-------- 711
Query: 693 MLTMNGYIKKVSLNLF--SSIRTTGIIAIQLV--PGDELKWVRCCTNDDLVAMASQNGMV 748
G+ K+ + ++ G+IA++L GD + V N DL+ + S+ G +
Sbjct: 712 ----KGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLVGVVATEENHDLMLLTSK-GKM 766
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785
I S D I +NT+G +RL D DK+ S+ P+
Sbjct: 767 IRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKTPS 803
>gi|420484053|ref|ZP_14982679.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-3]
gi|393100920|gb|EJC01493.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-3]
Length = 828
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDF +R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFFMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKTGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LD++D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDSIDEIVRLIKTSPSPEAAKNALMECFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I S + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFSLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D + D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDEKLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|418992736|ref|ZP_13540378.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG290]
gi|377748743|gb|EHT72699.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG290]
Length = 887
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/821 (42%), Positives = 534/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
Length = 818
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/816 (42%), Positives = 524/816 (64%), Gaps = 31/816 (3%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+ +++P+ + EE+ GSY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M+E+GL S + F
Sbjct: 4 IKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDRAF 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KKC R+VG+VLGK+HPHGD ++YD+LVR+AQDFS+RYP++R GNFGS+D DP AAMRYT
Sbjct: 64 KKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E +++ ++E ML DI ++TV++ PN+D+S +EP +LP P LL NGASGIAVGMATN+
Sbjct: 124 EAKMDRVAEEML-KDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATNM 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PHNL E+ + A I++ ++ +L++Y+ GPDFPTGG+I G GI A+RTG+G+ITV
Sbjct: 183 APHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKITV 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K +E +KS + +I+ EIPY NK+ L+ KIA+LV+ K +DGISD+RDESDR GM
Sbjct: 243 RSKFVIET--TKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGM 300
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIELKRG P +V+N L+ TALQ +F+ + ++DG PKQ+ LKE++ F+ R V
Sbjct: 301 RIVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEV 360
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
V RR R+ L + +ER HI+EG+ + LDN+D V++I++ + + A L + FKLSE+Q+
Sbjct: 361 VTRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMERFKLSERQS 420
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L++LT LE KK +E + ++ I L++LLSS + IL ++ E E+ ++
Sbjct: 421 QAILDMRLQKLTSLETKKIEEELREVLALIAYLKDLLSSEQKILGVVRDETEEIAQKYGD 480
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + + + +++ D+I ++M++ +S KG++KR+ +++ Q RG G S KL
Sbjct: 481 DRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFIKRVPVSSYRNQGRGGKGSSSAKLIN 540
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
D + + HD++L+ ++ G Y + ++IPE +R + GT + +L +S E IT+I
Sbjct: 541 EDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPEGSRASRGTHIKALLEISANEDITTI 600
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+ + EF+ + +L M T G +KKV + F + RT GIIAI+L GD L D +
Sbjct: 601 VSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTRGIIAIKLDNGDTLITAVLTRGDSEI 660
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ S+NG + D +R++ R +RG +RL+ D++A +
Sbjct: 661 VIVSRNGNALRFHEDQVRAMGRASRGVTGIRLQSDDELAGI------------------- 701
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
++ +L +SE+G GKRV F G I YK S +R + V L
Sbjct: 702 --LRVEDNEKMLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTS--ERSGEIVGVLSVL- 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGV 895
E D+ V + SQ T+ ++ V D+ +Q + A+GV
Sbjct: 757 ---EEDDLVCITSQGNTI-KLHVSDVPVQGKTAQGV 788
>gi|253989038|ref|YP_003040394.1| dna gyrase subunit a [Photorhabdus asymbiotica]
gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
Length = 879
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/891 (40%), Positives = 554/891 (62%), Gaps = 73/891 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM LG KP
Sbjct: 6 DIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 65
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 66 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 125
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P ++PA++P LL+NG+SGIAVGMATN
Sbjct: 126 TEVRMAKIAHE-LLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATN 184
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I + +++ L++++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 185 IPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGRGKIY 244
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + E+E +D K+ R +++ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 245 IRARAEIE-VDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDG 303
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ SF NMV + GQPK + LK+++ AF+ R
Sbjct: 304 MRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRRE 363
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+E + V L N+D +I ++R AP+ + A AAL
Sbjct: 364 VVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNV 423
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ ++ L+E+QA AILD+ L++LT LE +K +DE +
Sbjct: 424 ASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRE 483
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ I +L +L S + ++++I +E++ +K +++ R + L + ++ ++ D+I +++
Sbjct: 484 LLTLIGELLFILESPERLMEVIREELLAIKAQYNDARRTELTE-NTADINIEDLINQEDV 542
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 543 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSRGRL 602
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R+A G P++ +L L ERIT+I+PV E+ ++ M T +G +KK +
Sbjct: 603 YWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGLYVFMATASGTVKKTA 662
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GI+A+ L GDEL V + V + S G V+ D +R++ R
Sbjct: 663 LQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEEDAVRAMGRTAT 722
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L DK+ S+ IIP +G +L V+E+G+GKR
Sbjct: 723 GVRGIKLNGKDKVVSL-IIP------------------RGEG--EILTVTENGYGKRTAE 761
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K S + VVG A E +Q+++++ +GT+ R +V +
Sbjct: 762 NEYPIKSRATQGVISIKVSERNG----NVVG---AIQVEPTDQIMMITDAGTLVRTRVSE 814
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESG 935
+S+ R +GV L+R K+ L V EPE D D+L E G
Sbjct: 815 VSVVGRNTQGVTLIRTAEDEKV--VGLQRVAEPEDD------EDELVAEGG 857
>gi|345863459|ref|ZP_08815670.1| DNA gyrase subunit A [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345878474|ref|ZP_08830186.1| adenylosuccinate lyase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344224505|gb|EGV50896.1| adenylosuccinate lyase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|345125537|gb|EGW55406.1| DNA gyrase subunit A [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 861
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/871 (41%), Positives = 536/871 (61%), Gaps = 66/871 (7%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV L +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM LG KP+KK A
Sbjct: 8 VLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD AVYD++VRMAQ FS+RY L+ G GNFGS+D D AAMRYTE R+
Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRM 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ +M L D+D++TV+FVPN+D S+ EP++LPAR+P LL+NG++GIAVGMATNIPPHN
Sbjct: 128 AKIAHSM-LDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D AL+ N ++ EL++Y+PGPDFPT +I G GI +AYRTGRGRI +R +T
Sbjct: 187 LGEVIDACIALVDNEAISMSELMQYLPGPDFPTAAIINGAHGIKEAYRTGRGRIYMRART 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E LDS S R +I+ E+PYQ NK+ L+EKIAELV+ K ++GI+++RDESD+ GMR+VI
Sbjct: 247 EIESLDS-SNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGMRMVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+RG +V+N+L++ TA+QS F NMV ++DGQP+ + LK++L+ F+ R VV RR
Sbjct: 306 ELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQPRLLNLKQMLEYFIRHRREVVTRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
F+L + ++R H++EG+ V L N+D VI +++ A S + A AL
Sbjct: 366 TLFELRKARDRAHVLEGLAVALANIDEVIALIKAASSPAEAKLALLARHWQSGTVEAMLQ 425
Query: 489 -------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQI 529
+ ++L+E QA AILD+ L RLT LE+ K + E + L+E+I
Sbjct: 426 RAGADSTRPEGLALEFGLSEQGYRLTEIQAQAILDLRLHRLTGLEQDKIIKEYEELLEKI 485
Query: 530 LKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAIS 589
L ++LSS ++++I E++ ++ +++ PR + + D L D+I +++++ +S
Sbjct: 486 ANLLDILSSSFRLMEVIRDELLAIREQYNDPRRTQIIQ-DRLDLTLEDLITEEDVVVTLS 544
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
KGY K + + Q RG GKS + D + V HD +L FS G VY +
Sbjct: 545 HKGYAKAQPISVYQAQRRGGKGKSATATKDEDFVDKLFVASTHDTILCFSSHGKVYWLKV 604
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P+ R A G P+V +L L + ERI +I+PV EF D+++ M T +G +KK L FS
Sbjct: 605 YELPQAGRGARGKPMVNLLPLGEEERINAILPVREFPEDRYVFMATRSGIVKKTPLEAFS 664
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAM 769
R +GIIA+ L P D L V D V + + +G + +R + R G +
Sbjct: 665 RPRASGIIAVDLRPDDRLIGVEITDGDQHVMLFASSGKAVRFHESHVRPMGRTACGVRGI 724
Query: 770 RLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRK 829
+ ++ S+ + G G +L V+E+G GKR P++ +
Sbjct: 725 KFAPEQQLVSL---------------------IVGDQGD-ILTVTENGFGKRTPVAQYPV 762
Query: 830 LPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQA 889
+G+I + S + VVG A + D+++++++ GT+ R VRD+S
Sbjct: 763 HGRGGMGVISVQTSERNGP----VVG---AVQVQEDDEIMMITNGGTLVRTPVRDVSQMG 815
Query: 890 RYARGVILMRLELSGKIQSASLISVTEPETD 920
R +GV ++RL + ++ I E E D
Sbjct: 816 RNTQGVTMIRLGKAERLIGIERIENLEEEQD 846
>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
gi|417891054|ref|ZP_12535121.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21200]
gi|418887939|ref|ZP_13442078.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1524]
gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
gi|341852921|gb|EGS93804.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21200]
gi|377756552|gb|EHT80449.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1524]
Length = 887
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/821 (42%), Positives = 534/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SIDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|46906231|ref|YP_012620.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
gi|386730768|ref|YP_006204264.1| DNA gyrase subunit A [Listeria monocytogenes 07PF0776]
gi|404279559|ref|YP_006680457.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2755]
gi|404285374|ref|YP_006691960.1| DNA gyrase subunit A [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405748342|ref|YP_006671808.1| DNA gyrase subunit A [Listeria monocytogenes ATCC 19117]
gi|405751211|ref|YP_006674676.1| DNA gyrase subunit A [Listeria monocytogenes SLCC2378]
gi|406702782|ref|YP_006753136.1| DNA gyrase, A subunit [Listeria monocytogenes L312]
gi|417314057|ref|ZP_12100763.1| DNA gyrase subunit A [Listeria monocytogenes J1816]
gi|417316493|ref|ZP_12103138.1| DNA gyrase subunit A [Listeria monocytogenes J1-220]
gi|424712857|ref|YP_007013572.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str.
LL195]
gi|424821660|ref|ZP_18246673.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A]
gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
F2365]
gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes J1816]
gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes J1-220]
gi|332310340|gb|EGJ23435.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A]
gi|384389526|gb|AFH78596.1| DNA gyrase subunit A [Listeria monocytogenes 07PF0776]
gi|404217542|emb|CBY68906.1| DNA gyrase, A subunit [Listeria monocytogenes ATCC 19117]
gi|404220411|emb|CBY71774.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2378]
gi|404226194|emb|CBY47599.1| DNA gyrase, A subunit [Listeria monocytogenes SLCC2755]
gi|404244303|emb|CBY02528.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406359812|emb|CBY66085.1| DNA gyrase, A subunit [Listeria monocytogenes L312]
gi|424012041|emb|CCO62581.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str.
LL195]
Length = 842
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/835 (41%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL H+P+ T+++L+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|407005951|gb|EKE21960.1| hypothetical protein ACD_7C00086G0012 [uncultured bacterium]
Length = 815
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/823 (42%), Positives = 523/823 (63%), Gaps = 26/823 (3%)
Query: 91 EEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL 150
+E+ SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M + GL S F+K A VVGEVL
Sbjct: 18 KEVQQSYLDYAMSVIVARALPDVRDGLKPVHRRILYSMWKTGLRSSAKFRKSATVVGEVL 77
Query: 151 GKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAM 210
GK+HPHGD AVYD++VRMAQDFSLRYPLI G GNFGS+D D AAA RYTE +L+ ++E M
Sbjct: 78 GKYHPHGDTAVYDTMVRMAQDFSLRYPLIWGQGNFGSMDGDNAAAYRYTEAKLKRIAEEM 137
Query: 211 LLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDV 270
L+ DI++DTV+FVPNFD KEP++LPA+LP LLLNG+ GIAVGMATNIPPHNL ELVD
Sbjct: 138 LV-DIEKDTVDFVPNFDGVHKEPTVLPAKLPNLLLNGSMGIAVGMATNIPPHNLNELVDA 196
Query: 271 LCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDS 330
LI NP+A++ +LLE++ GPDFPTGG+I I +AY GRG IT R K + +++
Sbjct: 197 TIHLIDNPKASVDDLLEFVKGPDFPTGGVIYDQKSIREAYINGRGGITTRAKAAI--VEA 254
Query: 331 KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD 390
K+ +I+ EI Y TNKS L+EKIA LV+ + + GI +RDES++ G+RIV+ELK+ +
Sbjct: 255 KNGGHQIIVSEITYLTNKSSLLEKIALLVKEQKIQGIKGLRDESNKDGVRIVVELKKDSY 314
Query: 391 PSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCSVVERRARFKLS 449
P V+N LY LT LQ +F+ NM+ ++DG P+ M LK +L+ ++ R VV RR ++ L
Sbjct: 315 PEKVLNKLYSLTDLQKNFNVNMLALVDGIDPQVMNLKSMLEYYVIHREQVVTRRTQYDLQ 374
Query: 450 QVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRR 509
+ K+R HI+EG+ LD++D VI ++++ + + A L FK SE+Q +AIL+M L+
Sbjct: 375 KAKDRAHILEGLKKALDHIDEVIETIKKSKTRADAHINLIKRFKFSERQTEAILEMKLQT 434
Query: 510 LTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDAD 569
L LERKK DE K I KLE +L SR ++ +++ E++E+K+++ R + +
Sbjct: 435 LAGLERKKIEDELKEKKIIIAKLEAILKSRTKLMGIVKTELLEVKDQYGDERKTRVIKGK 494
Query: 570 SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVC 629
G+ D++ N+E ++ +S+ GYVKRM P+ + Q RG G ++ +D +S
Sbjct: 495 IGEFKQEDLVANEESIITLSQSGYVKRMSPDAYKTQKRGGKGVIGANIKEDDIISQVYAV 554
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
AHD++L+F+D G V+ +A++IPE TR + G LV L LS GE++T ++ ++ G +
Sbjct: 555 MAHDNLLFFTDSGKVFQTKAFEIPESTRTSRGQALVNFLQLSSGEKVTEMVAFNKDDGFK 614
Query: 690 FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI 749
F M T G +KKV + F ++R +G+IAI L D+L WV+ T D + MA+ G I
Sbjct: 615 FFFMATEEGNVKKVKIEEFENVRRSGLIAINLSKEDKLSWVKLTTGTDEIVMATSGGQAI 674
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809
+R++ R G +RLK D++ +D + KG G
Sbjct: 675 RFKESDVRAMGRGAGGVRGVRLKKEDRVIGVDAV------------------FKGQKGNQ 716
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
L+ +SE+G+GKR L ++ + + G G K ++ V G + D E + +
Sbjct: 717 LMVISENGYGKRSDLKLYK---IQKRGGSGIKTASVTSKTGKLVGGRIVNAD-EIESDLF 772
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ S G + RI ++ IS+ R +GV +M ++ K+ ++++I
Sbjct: 773 VTSTKGQIIRIPLKSISVLGRATQGVRIMNMKNGDKVGASTII 815
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 127/328 (38%), Gaps = 79/328 (24%)
Query: 662 TPLVQILSLSDGERITSIIP--VSEF------AGDQFLVMLTMNGYIKKVSLNLFSSIRT 713
T L+++ ER T +I + EF A ++ ++ L+ +GY+K++S + + + +
Sbjct: 473 TELLEVKDQYGDERKTRVIKGKIGEFKQEDLVANEESIITLSQSGYVKRMSPDAYKTQKR 532
Query: 714 --TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA--- 768
G+I + D + V D + + +G V + I +R +RG
Sbjct: 533 GGKGVIGANIKEDDIISQVYAVMAHDNLLFFTDSGKVFQTKAFEIPESTRTSRGQALVNF 592
Query: 769 MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFR 828
++L G+K+ M A +KD + +E G+ K+V + F
Sbjct: 593 LQLSSGEKVTEM----VAFNKD--------------DGFKFFFMATEEGNVKKVKIEEFE 634
Query: 829 KLPLNRVGLIGYKFSAEDRLAAVF------------------------------------ 852
+ R GLI S ED+L+ V
Sbjct: 635 NV--RRSGLIAINLSKEDKLSWVKLTTGTDEIVMATSGGQAIRFKESDVRAMGRGAGGVR 692
Query: 853 ---------VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-EL 902
V+G G+ Q++++S++G R ++ IQ R G+ +
Sbjct: 693 GVRLKKEDRVIGVDAVFKGQKGNQLMVISENGYGKRSDLKLYKIQKRGGSGIKTASVTSK 752
Query: 903 SGKIQSASLISVTEPETDLFLPSTSDKL 930
+GK+ +++ E E+DLF+ ST ++
Sbjct: 753 TGKLVGGRIVNADEIESDLFVTSTKGQI 780
>gi|350268405|ref|YP_004879711.1| DNA gyrase subunit A [Oscillibacter valericigenes Sjm18-20]
gi|348593245|dbj|BAK97205.1| DNA gyrase subunit A [Oscillibacter valericigenes Sjm18-20]
Length = 847
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/834 (42%), Positives = 530/834 (63%), Gaps = 38/834 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM SYI Y+MSV++GRALPDVRDGLKPVHRRIL+AM+E GL+ K F+KCA VG+VLG
Sbjct: 27 EMQQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGLTYEKAFRKCATAVGDVLG 86
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
++HPHGD +VYD+LVR+AQDFS+RY L+ GHGNFGSID DP AA RYTE RL +SE M
Sbjct: 87 RYHPHGDQSVYDALVRLAQDFSMRYVLVDGHGNFGSIDGDPPAAYRYTEARLSKISEEM- 145
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
L DID++TV++ PNFDE++KEP +LP+R P LL+NG+SGIAVGMATNIPPHNL E+++
Sbjct: 146 LRDIDKETVDWSPNFDETRKEPKVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREVINAC 205
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
++ +PEA L +L++Y+ GPDFPT G+IMG GI AY TGRGR+ +R +TE E
Sbjct: 206 VHVLDDPEAQLADLMQYIKGPDFPTRGIIMGRSGIRAAYATGRGRVVIRSRTEFEEFGKD 265
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
R +++ EIPYQ NK ML++ +A+ VE+K L+GISDIRDESDR+GMR+VIELKR A+P
Sbjct: 266 RTR--IVVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESDRNGMRVVIELKRDANP 323
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERRARFKLS 449
+V+N L+ T LQSSF+ NM+ ++D QPK + L+ ++ +L+F+ ++ RR R L
Sbjct: 324 QVVLNRLFTQTQLQSSFAINMLALVDNQSQPKILSLRHIIDEYLNFQEDLIVRRTRHDLK 383
Query: 450 QVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRR 509
+ +ER H++EG+++ D++D VI+++R + N A L ++F L + QA AI DM L
Sbjct: 384 KAQERAHLLEGLLIAQDHIDEVIKVIRSSYDN--AKQNLMEKFGLDDVQAQAICDMRLIA 441
Query: 510 LTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDAD 569
L L R+K E K L E+I E+LL+S + I ++++E++ + ++ R + ++D +
Sbjct: 442 LQGLNREKLETEYKELEEKIGYYEKLLASNEMIRAVLKEELVAIAEKYGDDRKTEIQDVE 501
Query: 570 SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVC 629
++D D+I ++ + ++E GY+KR + + Q++G +GK R D + D
Sbjct: 502 D-EIDIEDLIEEEQCVFTLTEAGYIKRTPVSEYTAQSKGGMGKKGITTRDEDVVVDVFTA 560
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD- 688
HD++L+F+D G VY + Y+I E + A GT L+ IL + GER+ +++ D
Sbjct: 561 STHDYILFFTDTGKVYRKKGYQILESGKTAKGTNLINILQIEQGERVQAMVHTRSIEDDG 620
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
+FL M+T NG +K++ + ++R GI A+++ GD+L VR + +A+ +G
Sbjct: 621 RFLFMVTRNGTVKRLPASTLKNLRNNGIRALRMDEGDQLITVRETDGTKKILIATHDGQA 680
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
+ +R + R+ G +RL++GD ++ AA + + G
Sbjct: 681 VCFQETDVRPMGRDAMGVRGIRLREGDY-----VVAAA----------------RATEGK 719
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L ++E G+GKR P+ +R NR GL + ++ VVG + DG D +
Sbjct: 720 TVLSITEKGYGKRTPVEDYR--ITNRGGLGIKNYMVTEKTGP--VVGVKVV-DGSED--L 772
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
+LV+QSG + R V I + R +GVI+MR + G Q S+ + ET+ F
Sbjct: 773 LLVTQSGIMIRTPVESIRVAGRATQGVIVMRFKEDGD-QVISMALTDKEETESF 825
>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
Length = 894
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/866 (41%), Positives = 545/866 (62%), Gaps = 54/866 (6%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRILFAM E G KPF+K A
Sbjct: 12 VTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+A+YD++VRMAQ FS+R PLI G GNFGS+D D AAAMRYTE R+
Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEARM 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A S L+ DID+DTV+F PN+D+S EP +LPAR P LL+NGA GIAVGMATNIPPHN
Sbjct: 132 -ARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D CA+I NP+ T +E++E +PGPDFPTGG I+G GI A TGRG + +RG+
Sbjct: 191 LGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSVVMRGRC 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +I+ E+PYQ NK+ ++E+IAELV +K ++G+SD+RDESDR G+R+VI
Sbjct: 251 HIE--EVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVI 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A +V+ LY+ T LQ+SF N + + G+P+ M L+E++ AFL FR V+ RR
Sbjct: 309 EIKRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEVITRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK-------------- 489
F+L + ++R H++ G+ + + N+D +I+++REA + A L
Sbjct: 369 TIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLIR 428
Query: 490 --DE---------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSS 538
DE + LSE QA AILD+ L RLT LER K DE + + EQI + E+LSS
Sbjct: 429 LIDEPGRGIVDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILSS 488
Query: 539 RKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMK 598
R +L+++ E+I+++N+F+TPR + +ED++ + D D+I ++M++ ++ GY+KR+
Sbjct: 489 RPKLLEVMRNELIDMRNQFATPRRTTIEDSEF-EADIEDLIAREDMVVTVTNTGYIKRVP 547
Query: 599 PNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658
+T+ Q RG G+S ++ D +S V H VL+FS GI Y + Y++P T
Sbjct: 548 LSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPLGTPQ 607
Query: 659 AAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTG 715
A G +V IL L +GE I++++P+ E GD + T G +++ L+ F IR G
Sbjct: 608 ARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDIRANG 667
Query: 716 IIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAMRLKDG 774
IA++L G++L V+ C++ D + +A++ G I +R R++ G +RL D
Sbjct: 668 KIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIRLDDA 727
Query: 775 DKMASMDIIPAALHKDLERTPEDSH--SNVKG-------SSGPWLLFVSESGHGKRVPLS 825
D++ SM ++ H + + D++ +++ G S +L V+E+G+GKR
Sbjct: 728 DQVISMSVL---RHVEFDMETRDAYLRNDLTGPEAERMSESEQMILTVTENGYGKRTSAY 784
Query: 826 SFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+R G+ + ++ + A F VG D++++LVS GT+ R+ V D
Sbjct: 785 EYRITGRGGQGIANIDLTEKNGPVVASFPVGH--------DDEIMLVSDGGTLIRMPVDD 836
Query: 885 ISIQARYARGVILMRLELSGKIQSAS 910
I I R +GVI++R + ++ S +
Sbjct: 837 IRIAGRKTQGVIVLRTAENERVVSTA 862
>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 873
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|421714957|ref|ZP_16154275.1| DNA gyrase, A subunit [Helicobacter pylori R036d]
gi|407215811|gb|EKE85649.1| DNA gyrase, A subunit [Helicobacter pylori R036d]
Length = 832
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/830 (43%), Positives = 541/830 (65%), Gaps = 32/830 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDYSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP++LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPAILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNRVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQESYES-IDTEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L+ E+I + + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVS 657
Query: 730 VRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ N + +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 658 AKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVI----- 712
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
G LL VSE+G GK+ ++R+ G+IG K + +
Sbjct: 713 ---------------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQK--- 754
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 755 -TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 801
>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
gi|224953829|gb|EEG35038.1| DNA gyrase, A subunit [Eubacterium hallii DSM 3353]
Length = 852
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/843 (42%), Positives = 526/843 (62%), Gaps = 41/843 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+ +I V+L M SYI Y+MSV++ RALPDVRDGLKPV RRIL++M EL KP
Sbjct: 5 NIFDKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGPDKP 64
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KCAR+VG+ +GK+HPHGD+++Y +LV +AQD+S RYPL+ GHGNFGS+D D AAAMRY
Sbjct: 65 HRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAAMRY 124
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL +S M ADI +DTV+FVPNFDE++KEPS+LP+R P LL+NGA GIAVGMATN
Sbjct: 125 TEARLSKISMEMT-ADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMATN 183
Query: 259 IPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
IPPHNL E +D + +I N + + ELLE + GPDFPTG I+G GI AYRTG
Sbjct: 184 IPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYRTG 243
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR T +E + + +R +I+ E+PY NK+ L+EKIA+LV+ K +DGI+++RDE
Sbjct: 244 RGKIKVRAVTNIEPMKNGKQR--IIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDE 301
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
SDRSGMRI IE ++ + ++++ L++ T LQ +F M+ ++D QPK + LKE+L +L
Sbjct: 302 SDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYL 361
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ + VV RR +++L++ KER HI+EG++ LD +D VI I+R + + + A L F+
Sbjct: 362 NHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKRFE 421
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
S+ QA AI+DM LR LT LER+K +E L ++I +LE +L+ K +L +I +E++ +
Sbjct: 422 FSQAQAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAILADEKVLLGVIREEILLI 481
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
++++ R + +E D L D +IP + ++ S+ GY+KRM P+ F+ QNRG GK
Sbjct: 482 RDKYGDDRRTSIE-MDMEDLSDEALIPRKDAIITFSKLGYIKRMTPDNFHSQNRG--GKG 538
Query: 614 VGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
+ + V D + D + H+++++F+++G VY + Y+IPE +R A G ++ +L L
Sbjct: 539 IKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLKGYEIPESSRTARGVNIINLLQLQ 598
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
E+IT+IIP+SE +LVM T NG +KK + + ++R G+ AI L GDEL V+
Sbjct: 599 PEEKITAIIPLSEDGKQHYLVMATRNGIVKKTGFDEYKNVRKNGLAAISLREGDELIEVK 658
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDL 791
++ + + S+ G I +R R + G + M L D D++ M I
Sbjct: 659 QTDENEDIFLVSREGQCIRFKLQDVRETGRVSMGVIGMNLGDTDEVVGMQI--------- 709
Query: 792 ERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV 851
S G LL VSE G GKR PL F GL YK + +
Sbjct: 710 ------------HSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKITEK----TG 753
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
+V+G + +E+++L++ G V R+K IS+ R GV L+ ++ I+ AS+
Sbjct: 754 YVIGVKTI---KPEEEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDIKVASV 810
Query: 912 ISV 914
V
Sbjct: 811 AKV 813
>gi|407700224|ref|YP_006825011.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Black Sea 11']
gi|407249371|gb|AFT78556.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Black Sea 11']
Length = 904
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/873 (41%), Positives = 539/873 (61%), Gaps = 86/873 (9%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP+K
Sbjct: 5 AKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLAD+D++TV+FVPN+D ++ P +LP ++P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+++ ALI +P T+ +L+ Y+PGPDFPT +I G GI DAYRTGRG+I +R
Sbjct: 184 PHNLTEVINGCVALIQDPSITIDDLMTYIPGPDFPTAAMISGRKGIEDAYRTGRGKIYLR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E DS K +++ EIPYQ NK+ L+EKIAELV+ K ++G+S +RDESD+ GMR
Sbjct: 244 AKAEIE-TDSNGKET-IVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR +++N LY T LQ+ F NMV + +GQPK LKE L+ F+ R VV
Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------------ 488
RR F+L + ++R HI+EG+ + L N+D +I +++ + S + A +L
Sbjct: 362 TRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQ 421
Query: 489 ----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
++ L+E+QA AILD+ L +LT LE +K ++E K L+
Sbjct: 422 MLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLL 481
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
E I +L +L+S + ++++I++E+ ++++ F R + + A S +D D+I +++++
Sbjct: 482 ELIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEIT-AASHDIDIEDLIEQEDVVV 540
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK K + Q RG GKS K++ D + +V HDH+L FS RG +Y
Sbjct: 541 TLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYW 600
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+ Y++P +RNA G P+V IL L + ERIT+I+P+ EF +F++M T NG +KK L+
Sbjct: 601 LKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTVKKTDLS 660
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDI----------- 755
L+S R++GIIA+ L GDEL V DD + + S G V+ + +
Sbjct: 661 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRD 720
Query: 756 ---------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+R + R G +RL+DG K+ S+ I+P KG
Sbjct: 721 PETGEELLALRPMGRTATGVRGIRLQDGQKVVSL-IVP------------------KG-D 760
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
GP +L +E+G GKR PL + G++ K S + VVG A +
Sbjct: 761 GP-ILTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGK----VVG---AVQVDETN 812
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+++L+S GT+ R +V ++S+ R +GV L+R
Sbjct: 813 EIMLISDQGTLVRTRVSEVSVVGRNTQGVRLIR 845
>gi|191636830|ref|YP_001985996.1| DNA gyrase subunit alpha [Lactobacillus casei BL23]
gi|385818542|ref|YP_005854929.1| DNA gyrase subunit A [Lactobacillus casei LC2W]
gi|385821706|ref|YP_005858048.1| DNA gyrase subunit A [Lactobacillus casei BD-II]
gi|409995672|ref|YP_006750073.1| DNA gyrase subunit A [Lactobacillus casei W56]
gi|417992499|ref|ZP_12632855.1| DNA gyrase subunit A [Lactobacillus casei CRF28]
gi|418006533|ref|ZP_12646482.1| DNA gyrase subunit A [Lactobacillus casei UW1]
gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
gi|406356684|emb|CCK20954.1| DNA gyrase subunit A [Lactobacillus casei W56]
gi|410533221|gb|EKQ07904.1| DNA gyrase subunit A [Lactobacillus casei CRF28]
gi|410543440|gb|EKQ17808.1| DNA gyrase subunit A [Lactobacillus casei UW1]
Length = 873
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
difficile NAP08]
gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
difficile NAP08]
Length = 808
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/834 (42%), Positives = 535/834 (64%), Gaps = 32/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+E+ EEM SYI YSMSV+ GRALPDVRDGLKPVHRRIL++M EL L+ KP++K
Sbjct: 6 KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ LS LL DI+++TV+F PNFDES KEPS+LPAR P LL+NG++GIAVGMAT+IPPH
Sbjct: 126 MSKLS-LELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D LI NPE ++ +L++++ GPDFPT +IMG I +AYRTGRG++ VR +
Sbjct: 185 NLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSR 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L K K+ +I+ EIPYQ NK+ LVE+IAELV+ K ++GISD+RDES+R+GMRIV
Sbjct: 245 AFIEEL-PKGKQQ-IIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A+ +IV+N+LY+ + ++ +FS M+ ++DGQP+ + LK++L ++ + VV R
Sbjct: 303 IELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+ + LDN+D VI ++R + + A L ++F L+E QA AI
Sbjct: 363 RTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E + L+++I +L+E+L+ + +L +I+ E+ +K +S R
Sbjct: 423 LDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + A+ G++D D+I ++E+ + ++ GY+KR+ +T+ Q RG G S R D
Sbjct: 483 TEIRHAE-GEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H +L+F+++G V+ AY+IPE R A GT +V +L LS E+I ++IP+
Sbjct: 542 VRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+++L++ T G +KK F +I +G+IAI L DEL V V +
Sbjct: 602 DGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ GM I + IR + R G + L D + SM++
Sbjct: 662 TKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLC------------------- 702
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
S G +L VS++G GKR + +R G+ Y S + +VG + +
Sbjct: 703 --SKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEK----TGTIVGADMVNE- 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
D+++++++ G + RI+V +IS+ R GV LM+ + S + I++ E
Sbjct: 756 --DDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807
>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
Length = 835
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/807 (42%), Positives = 519/807 (64%), Gaps = 33/807 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
EM S++ Y+MS+++ RALPDVRDGLKPVHRRIL+AM ELG+SS KP+KK AR+VGEV+G
Sbjct: 18 EMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSSDKPYKKSARIVGEVIG 77
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD++VY+++VRMAQDFS+RY L+ GHGNFGSID D AAAMRYTE RL ++ ML
Sbjct: 78 KYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEML 137
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
D++++TV+FVPN+D +KEP++LP+R P LL+NG +GIAVGMATNIPPHNL E++D +
Sbjct: 138 -RDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMATNIPPHNLTEVIDGI 196
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
ALI NPE T EL++Y+ GPDFPT G++MG GI AY TGRG +T+R + +E +K
Sbjct: 197 QALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGTVTMRARATIEENGNK 256
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
++ +I+ E+PYQ NK+ LVEKIAELV K ++GI+D+RDESDR+GMR+VIEL+R P
Sbjct: 257 AR---IIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIELRRDVTP 313
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
S+V+N+LY+ T +QS+F NM+ +++G+PK + ++E+L +L + V+ RR + L +
Sbjct: 314 SVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIEVIRRRTEYDLKKA 373
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ + LD+LD VI ++R + + A L + F LS +QA AILDM L+RLT
Sbjct: 374 EARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSYEQAQAILDMRLQRLT 433
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER K E LM++I + + +L+ + +L +I E+ E+K RF R + + +D
Sbjct: 434 GLERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEE 493
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRA 631
LD+ D+IP ++++++I+ GY+KR+ T+ Q RG G + +D + V
Sbjct: 494 ILDE-DLIPREDVIISITHTGYIKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNT 552
Query: 632 HDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL 691
H ++L+F+++G VY +AY+IP+ +R A GTP++ ++ + GE I ++IPV F + +L
Sbjct: 553 HHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPVESFDSESYL 612
Query: 692 VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILS 751
T G +KK L+ + +IR G+IAI + DEL V+ + + M + GM I
Sbjct: 613 FFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRF 672
Query: 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811
S +RS+ R+ G ++L + PE+ +L
Sbjct: 673 SEQDVRSMGRSATGVKGIQLD----------DDDTVIDMDVVNPEND-----------VL 711
Query: 812 FVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLV 871
V+ G+GKR P+S +R NR G + D+ + + L +DE ++++
Sbjct: 712 IVTAKGYGKRTPMSEYR--IQNRGGKGIKTLNVTDKNGPIVSLKVVL-----NDEDLMIM 764
Query: 872 SQSGTVNRIKVRDISIQARYARGVILM 898
+ GT+ R + IS R +GV L+
Sbjct: 765 TALGTLIRTSMEGISTMGRNTQGVKLI 791
>gi|418598550|ref|ZP_13162059.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21343]
gi|374399327|gb|EHQ70468.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21343]
Length = 887
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 550/859 (64%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +T
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDT 814
Query: 920 DLFLPSTSDKLATESGVSE 938
+ T++ + S VSE
Sbjct: 815 E---DETNEDEQSTSTVSE 830
>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
Length = 879
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/855 (42%), Positives = 536/855 (62%), Gaps = 60/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ + P+ + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP
Sbjct: 3 DLAREVSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+E ++ LLAD+D++TV+FV N+D +++ P +LP ++P L++NG+SGIAVGMATN
Sbjct: 123 TEIRMEKIAH-QLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ ALI NPE +++EL+E++PGPDFPT I G GI++AY+TGRGRI
Sbjct: 182 IPPHNLTEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIH 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K EVE+ D KS R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ G
Sbjct: 242 LRAKAEVEV-DEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE++RG +V+N LY T +Q F NMV + GQPK L +VL AF+ R
Sbjct: 301 MRIVIEIRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR+ ++L + +ER HI+EG+ + L N+D VI ++R +P+ + A L
Sbjct: 361 VVTRRSVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 421 AAMLESAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKG 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S + ++++I +E++E+++ F R + + A + + D+I +++
Sbjct: 481 LLKQIEELLHILRSTERLMEVIREELVEIRDNFGDARKTEI-TAAAHDISMEDLINEEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GK+ K++ +D + V HD +L FS RG +
Sbjct: 540 VVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRI 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R + G P+V +L L ERIT+I+P ++ D+F++M T +G +KK
Sbjct: 600 YWMKVYQLPLASRASRGKPIVNLLPLESDERITAILPTRDYPEDKFVIMATKHGTVKKTP 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L +S R GIIA+ L GDEL V + + + S G V+ D +RS+ R
Sbjct: 660 LPEYSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL++G K+ S+ I+P T ED +L V+E+G GKR +
Sbjct: 720 GVRGIRLEEGQKVVSL-IVPG--------TYEDEQQAA-------ILTVTENGFGKRTLV 763
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G++ K S +R A VVG DG +++L+S GT+ R +V +
Sbjct: 764 EEYPTKSRATKGVVSIKVS--ERNGA--VVGAMEVVDG---NEIMLISNKGTLVRTRVNE 816
Query: 885 ISIQARYARGVILMR 899
+S+ R +GV L+R
Sbjct: 817 VSMVGRNTQGVRLIR 831
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 580 PNDEMLLAISEKGYVKRMK-PNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF 638
P D+ ++ ++ G VK+ P +N G I + L D + + ++ F
Sbjct: 641 PEDKFVIMATKHGTVKKTPLPEYSRPRNGGIIALN---LNEGDELIGVDITDGEQEIMLF 697
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTM-- 696
SD G V R ++ R A G V+ + L +G+++ S+I + +Q +LT+
Sbjct: 698 SDGGKVVRFREDQVRSMGRTATG---VRGIRLEEGQKVVSLIVPGTYEDEQQAAILTVTE 754
Query: 697 NGYIKKVSLNLF--SSIRTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSS 752
NG+ K+ + + S T G+++I++ G + + ++++ + S G ++ +
Sbjct: 755 NGFGKRTLVEEYPTKSRATKGVVSIKVSERNGAVVGAMEVVDGNEIM-LISNKGTLVRTR 813
Query: 753 CDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
+ + + RNT+G +R D +++ + I
Sbjct: 814 VNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844
>gi|420410233|ref|ZP_14909376.1| DNA gyrase, A subunit [Helicobacter pylori NQ4200]
gi|393028546|gb|EJB29632.1| DNA gyrase, A subunit [Helicobacter pylori NQ4200]
Length = 826
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 536/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLINGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND-D 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVGAKVVDNNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-------------- 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG + + + +VG
Sbjct: 708 ------NDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
gi|421760840|ref|ZP_16197653.1| DNA gyrase subunit A [Bartonella bacilliformis INS]
gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
gi|411174156|gb|EKS44190.1| DNA gyrase subunit A [Bartonella bacilliformis INS]
Length = 928
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/909 (42%), Positives = 539/909 (59%), Gaps = 79/909 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+VS I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GL KP
Sbjct: 11 DVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLLFNKP 70
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K A VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRY
Sbjct: 71 YRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRY 130
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TECRLE ++E LLADID+DTV+F N+D + EP +LPAR P LL+NG+ GIAVGMATN
Sbjct: 131 TECRLEKVAEE-LLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSGGIAVGMATN 189
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D ALI NP T+ E+L +PGPDFPTGG+I+G+ G+ AY TGRG I
Sbjct: 190 IPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSAYETGRGSII 249
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E + +++R +I+ EIPYQ NK+ +VEK+AELV +K ++GISD+RDESDR G
Sbjct: 250 MRAKVEIEEI--RNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLRDESDRDG 307
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
R+VIELKR A +V+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR
Sbjct: 308 YRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRAFVSFREE 367
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR ++ L + +ER H++ G+ + + N+D +I ++R+A TA L
Sbjct: 368 VVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMERRWPASEV 427
Query: 489 ----------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
+ + LSE+QA AIL++ L+RLT L R + DE + E I
Sbjct: 428 AALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAIGEDIADY 487
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
+L+SR I+ +++ E+ L+ F+TPR ++ S ++D D+I ++M++ +S G
Sbjct: 488 LGILASRSRIMDIVKSELSALRETFATPRRTVF-GFGSAEMDCEDLIVPEDMVVTVSHSG 546
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
Y+KR+ NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++
Sbjct: 547 YIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRL 606
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFS 709
P T + G L+ +L L GERIT+I+P+ E G ++ T G +++ L+ F
Sbjct: 607 PVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRNKLSDFI 666
Query: 710 SIRTTGIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSV 767
+ G IA++L GDE+ V CT D V + + NG I IR S RN+ G
Sbjct: 667 QVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGRNSMGVR 726
Query: 768 AMRLKDGDKMASMDIIPAALHKDLERTPEDSHS----NVKGSSGP--------------- 808
+ + +GDK+ SM I+ +ER+ + V GS
Sbjct: 727 GINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDGEETEVE 786
Query: 809 --------------WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS--AE-DRLAAV 851
LL VSE G+GKR FR G+ S AE +L A
Sbjct: 787 LTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVAA 846
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
F VG +Q++LVS G + R+ V I I R +GV + K+ S
Sbjct: 847 FPVG--------ERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVER 898
Query: 912 ISVTEPETD 920
IS +E +T+
Sbjct: 899 ISESENDTN 907
>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
Length = 809
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/820 (43%), Positives = 528/820 (64%), Gaps = 33/820 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VPV + EE+ SY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM+E+GL +PFKK
Sbjct: 7 KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
R+VG+VLGK+HPHGD ++YD+LVR+AQ+FS+RYP++ G GNFGSID DP AAMRYTE +
Sbjct: 67 GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E ML DI+++TV+FVPN+DES KEP++LPA +P LL+NGASGIAVGMATNIPPH
Sbjct: 127 LHKIAEEML-RDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+ + A+I NPE ++LL Y+ GPDFPTGG+I G GI AY TG+G + VR +
Sbjct: 186 NLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L +S R +++ EIPY NKS L+E++A LV +K ++GIS+IRDESDR+G+RIV
Sbjct: 246 LSLETL--RSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
ELKRG P +V+N L+ +T LQ++F N + ++ G+P+ + LKE++Q F+ R VV R
Sbjct: 304 FELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
RA++ L + +ER HI+EG+ + LDN+D VI I++++ + +A L F LSE+QA AI
Sbjct: 364 RAQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L++LT LE +K ++E + ++ I +L+ELL S + IL++++ E +EL + R
Sbjct: 424 LDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ LD D+I ++M++ +S G +KRM + + Q RG G GKL +D
Sbjct: 484 TEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGKLSGDDV 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+S V HD++L+ S+ G Y + ++IPE +R + G + ++ LS E++++++ V
Sbjct: 544 VSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F ++ + M+T G K++ + S+ RT G+IAI L GD L V +
Sbjct: 604 ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLTEGKGEVMIV 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + RS+ R RG A++L+ GD++ +P KD
Sbjct: 664 TRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEVCGA--VPVEEGKD------------ 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
LL V+ G+GKRV S F G I YK SA LAAV V
Sbjct: 710 -------LLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSARTGELAAVLSV------- 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
E+ + V++V+ G + ++ V+DIS+ R A GV ++ LE
Sbjct: 756 -EAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLE 794
>gi|420437110|ref|ZP_14936094.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-28]
gi|393053424|gb|EJB54368.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-28]
Length = 826
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/821 (43%), Positives = 536/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARVHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRCTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISG------------ 709
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
Length = 815
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/844 (42%), Positives = 538/844 (63%), Gaps = 36/844 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+ + RI+P+E+ EEM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M E G++ KP
Sbjct: 2 DTNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKP 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD++VY ++V+MAQDFS R L+ G GNFGS+D D AAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ L+ LL DI+++TV+F PNFDES +EP +LPAR P LL+NG++GIAVGMAT+
Sbjct: 122 TEARMSKLA-LELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATS 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D I N + + ELL+Y+ GPDFPT I+G GI AY+TGRG++
Sbjct: 181 IPPHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVK 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E L K K+ +++ EIPYQ NK+ LVEKIA+LV+ K ++GISD+RDE++R G
Sbjct: 241 VRAKAEIEEL-PKGKQQ-IVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREG 298
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR + +IV+N+LY+ + L+ +FS M+ I+DG PK + LK+VL +LD +
Sbjct: 299 MRIVIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKD 358
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F+L + R HI+EG+ + LDN+DRVI I+R + + A L +EF LSE Q
Sbjct: 359 VITRRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQ 418
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K E K LM +I LE +L+ +L +I++E++ +K +
Sbjct: 419 AQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIKAKHE 478
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR + + A+ G+ D D+ +++ + ++ GY+KR+ +T+ Q RG G + R
Sbjct: 479 DPRRTQIIPAE-GEFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGIAALTTR 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + I + +L+F++RG VY AY++PE R + GT +V +L L+ GE++
Sbjct: 538 EEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKVAR 597
Query: 679 IIPVS--EFAGDQ--FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
I + G++ +L+M T NG +KK ++ F +I +G+IAI L GDEL V
Sbjct: 598 TITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLIAINLKDGDELIGVNMTD 657
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+ V + ++N M I + +R + R G + L D++ SM++I
Sbjct: 658 GNQEVVLVTENAMSIRFNEADVRPMGRTATGVKGITLSKDDRVVSMNLI----------- 706
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
G LL VS++G GKR + +R G+ Y +++ +V
Sbjct: 707 ----------GEGDNLLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNITSK----TGKIV 752
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G SL + D+++++++ +G + RI+V +ISI R GV LMR + ++ S + I
Sbjct: 753 GSSLVNE---DDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVEVVSIAKIKA 809
Query: 915 TEPE 918
+ E
Sbjct: 810 EDIE 813
>gi|417982120|ref|ZP_12622784.1| DNA gyrase subunit A [Lactobacillus casei 12A]
gi|410521523|gb|EKP96488.1| DNA gyrase subunit A [Lactobacillus casei 12A]
Length = 873
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGIGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
gi|417991182|ref|ZP_12631629.1| DNA gyrase subunit A [Lactobacillus casei A2-362]
gi|417994686|ref|ZP_12635001.1| DNA gyrase subunit A [Lactobacillus casei M36]
gi|417997764|ref|ZP_12638000.1| DNA gyrase subunit A [Lactobacillus casei T71499]
gi|418013786|ref|ZP_12653418.1| DNA gyrase subunit A [Lactobacillus casei Lpc-37]
gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
gi|410532346|gb|EKQ07055.1| DNA gyrase subunit A [Lactobacillus casei A2-362]
gi|410540725|gb|EKQ15236.1| DNA gyrase subunit A [Lactobacillus casei M36]
gi|410542412|gb|EKQ16860.1| DNA gyrase subunit A [Lactobacillus casei T71499]
gi|410555481|gb|EKQ29424.1| DNA gyrase subunit A [Lactobacillus casei Lpc-37]
Length = 873
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
Length = 812
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/835 (42%), Positives = 543/835 (65%), Gaps = 39/835 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
NV R + EL E SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G+++ KP
Sbjct: 3 NVDNRYIEEELKE----SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKP 58
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
FKK AR+VGEVLGK+HPHGD+AVY ++VRMAQDF+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 59 FKKSARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRY 118
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+E ++ A LL DID+DT+++ NFD+S EP++LPA+LP LLLNGA GIAVGMATN
Sbjct: 119 TEARMEKIT-AELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATN 177
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGELVD + ALI N + + EL+ Y+ GPDFPTG +I G GI++AY+TGRG+I
Sbjct: 178 IPPHNLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIK 237
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VRGK ++E + K+ + +I+ EIPYQ NK+ L+EKIA LV+ K + ISD+RDES+R G
Sbjct: 238 VRGKVDIE--EQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREG 295
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+RIVIE+K+G +P +V+N LY+ T LQ++F M+ +++ P+ + LKE+L ++ R
Sbjct: 296 IRIVIEVKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFD 355
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI++G + L+N+DR+I ++R + + A L +++ ++ Q
Sbjct: 356 VITRRTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQ 415
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A +ILDM L+RLT LER+K +E K + I +L E+L+ I +++++E++E+K +++
Sbjct: 416 ARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYN 475
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E+ L + D+I ++E+++ + KGYVKR++ + + Q RG G S
Sbjct: 476 DKRRTQIEEERMEILPE-DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTI 534
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D I D ++ F+D+G VY+ RAY+IP+ ++ + G L I++LS+GE+++
Sbjct: 535 EDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVSD 594
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN--D 736
I + EF ++ +V +T NG IKK SL F +I +G+IAI++ D++ +V +
Sbjct: 595 TIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTK 654
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +A+ +G D IR R+T+G A+ L++GD + S +I + PE
Sbjct: 655 EEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLI---------KNPE 705
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
+L ++E+G+GKR L + + G+I K S + ++ +V V
Sbjct: 706 TD-----------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVT 754
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
DE+++ ++ +G V R + +IS R +GV +M++ K+ + +
Sbjct: 755 --------EDEELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801
>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
Length = 821
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/832 (42%), Positives = 539/832 (64%), Gaps = 29/832 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++ EM +YI Y+MSV++GRALPDVRDGLKPVHRR+LFAMHELG++ KP+KK AR+V
Sbjct: 14 VDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAYNKPYKKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+AVYD++VRM QDFSLRYPLI G GNFGS+D D AAAMRYTE RL+ +
Sbjct: 74 GDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRLKRI 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S+ LL D++++TV F N+D++ +EP LLPAR+P LL+NG+SGIAVGMATNIPPHNLGE
Sbjct: 134 SDE-LLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMATNIPPHNLGE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+VD L L+ PEA + E+++ + GPDFPT G I G GI+DAYRTGRGRI +R + ++E
Sbjct: 193 VVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDAYRTGRGRIRMRARAQIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
SKS R +I+ EIPYQ NKS L+EKI ELV+ K ++GI+D+RDESDR GMRIV+E+K
Sbjct: 253 T--SKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDREGMRIVVEIK 310
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
RG ++N LY+ T ++ +F + +++ P+ + LKE+L+ F++ R +V R +F
Sbjct: 311 RGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEYFIEHRREIVIARIKF 370
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L+ ++ HI+EG+ V ++NLD VI +R + + A L F+ S++QA AILDM
Sbjct: 371 ELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIARFQFSDEQAQAILDMR 430
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LE +K + + + ++ I L+++L++ ++ +I E+ E++ +++ PR +++
Sbjct: 431 LQRLTGLEIEKIIRDYEEVLALIDDLQDILANDSRVIDIIRTELHEIREKYADPRRTIII 490
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D D ++D D+I ++ ++ ++ GYVKR +T+ Q+RG GK ++ D ++D
Sbjct: 491 D-DHEEIDLEDLIADEPTVITLTNDGYVKRTPADTYKSQHRGGKGKVGLDIKEGDFVTDI 549
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
VC H++++ F+DRG VY +AY IPE RN+ G +V + L E+I+++ PV EF+
Sbjct: 550 FVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRGKAIVNFVDLEKDEKISTVFPVREFS 609
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
D+FL+ +T NG KK L+ +++IR G+ AI L DEL V + V + ++ G
Sbjct: 610 EDKFLLFITKNGIAKKTPLSEYANIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFG 669
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I +R++ R +RG + L + D + S + I KD++ +
Sbjct: 670 ASIHFEEQEVRAVGRVSRGVKGITLVNNDYVVSAETIS----KDIDPS------------ 713
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
++L V++ G+GKR +R G + K + ++ L V G + DG +
Sbjct: 714 --YILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKNGLV---VRGLQVV-DG---D 764
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+++L+S+ G + R+ + I I R +GV L+ L +I S ++ + E
Sbjct: 765 EILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVAVAKTDDEE 816
>gi|417905269|ref|ZP_12549081.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21269]
gi|341844134|gb|EGS85353.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21269]
Length = 886
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 542/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G+ Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GEDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
Length = 885
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/853 (41%), Positives = 529/853 (62%), Gaps = 66/853 (7%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+P+ + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP+K
Sbjct: 5 AKEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLAD+D++TVNFVPN+D ++K P ++P R+P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMSKIAHE-LLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+++ ALI NP T++EL+EY+PGPDFPT +I G GI +AYRTGRG+I +R
Sbjct: 184 PHNLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIYLR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ E+E D+ + +I+ E+PYQ NK+ L+EKIAELV+ K ++G+S +RDESD+ GMR
Sbjct: 244 ARAEIEREDNGKET--IIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR +++N LY T LQ+ F NMV + + QPK LK+ L+ F+ R VV
Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE--------- 491
RR ++L + ++R H++EG+ + L N+D VI +++ +PS S A L +
Sbjct: 362 TRRTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAE 421
Query: 492 -------------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
+ L+E+QA AILD+ L +LT LE K + E K L+
Sbjct: 422 MLERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLL 481
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
+ I +L +L S + ++++I +E+ +++ F R + + A S +D D+I +++++
Sbjct: 482 DVIAELLRILGSSERLMEVIREELEAIRDEFGDDRRTEIT-AASHDIDLEDLIEREDVVV 540
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK K + + Q RG GKS K++ D + +V HDH+L FS RG +Y
Sbjct: 541 TLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYW 600
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+ Y++P +RNA G P+V IL L +GERIT+I+P+ EF +++ M T NG +KK L
Sbjct: 601 LKVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFVDGKYVFMATTNGTVKKTELT 660
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766
+S R GIIA+ L G+EL V D + + S G V+ + +R + R G
Sbjct: 661 QYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPMGRTATGV 720
Query: 767 VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826
+RL++ K+ S+ I+P +G+ +L +E+G+GKR ++
Sbjct: 721 RGIRLEEDQKVVSL-IVPQG----------------EGA----VLTATENGYGKRTDIAE 759
Query: 827 FRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886
+ G++ K S + L VVG A D++++L+S GT+ R + ++S
Sbjct: 760 YPAKSRATKGVVSIKVSERNGL----VVG---AVQVNEDDEIMLISDQGTLVRTRATEVS 812
Query: 887 IQARYARGVILMR 899
R +GV L+R
Sbjct: 813 TVGRNTQGVTLIR 825
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 634 HVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS-IIPVSEFAGDQFLV 692
++ FSD G V ++ R A G V+ + L + +++ S I+P E A ++
Sbjct: 692 EIMLFSDAGKVVRFHEEQVRPMGRTATG---VRGIRLEEDQKVVSLIVPQGEGA----VL 744
Query: 693 MLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGDELKWVRCCTN-DDLVAMASQNGMVI 749
T NGY K+ + + S T G+++I++ + L N DD + + S G ++
Sbjct: 745 TATENGYGKRTDIAEYPAKSRATKGVVSIKVSERNGLVVGAVQVNEDDEIMLISDQGTLV 804
Query: 750 LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + ++ RNT+G +R + + + + I ++E E
Sbjct: 805 RTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVESSNIETDEE 851
>gi|410861855|ref|YP_006977089.1| DNA gyrase subunit A [Alteromonas macleodii AltDE1]
gi|410819117|gb|AFV85734.1| DNA gyrase subunit A [Alteromonas macleodii AltDE1]
Length = 904
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/919 (40%), Positives = 558/919 (60%), Gaps = 95/919 (10%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP+K
Sbjct: 5 AKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLAD+D++TV+FVPN+D ++ P +LP ++P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+++ ALI +P T+ +L+ ++PGPDFPT +I G GI DAYRTGRG+I +R
Sbjct: 184 PHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYLR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E D+ K +++ EIPYQ NK+ L+EKIAELV+ K ++G+S +RDESD+ GMR
Sbjct: 244 AKAEIE-TDANGKET-IVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR +++N LY T LQ+ F NMV + +GQPK LKE L+ F+ R VV
Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------------ 488
RR F+L + ++R HI+EG+ + L N+D +I +++ + S + A +L
Sbjct: 362 TRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQ 421
Query: 489 ----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
++ L+E+QA AILD+ L +LT LE +K ++E K L+
Sbjct: 422 MLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLL 481
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
E I +L +L+S + ++++I++E+ ++++ F R + + A S +D D+I +++++
Sbjct: 482 ELIAELLHILNSPERLMEVIQEELEKIRDEFGDERRTEIT-AASHDIDIEDLIEQEDVVV 540
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK K + Q RG GKS K++ D + +V HDH+L FS RG +Y
Sbjct: 541 TLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILCFSTRGRLYW 600
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+ Y++P +RNA G P+V IL L D ERIT+I+P+ EF ++++M T NG +KK L+
Sbjct: 601 LKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEEGKYVLMATANGTVKKTDLS 660
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDI----------- 755
L+S R++GIIA+ L GDEL V DD + + S G V+ + +
Sbjct: 661 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRD 720
Query: 756 ---------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+R + R G +RL+DG K+ S+ I+P KG
Sbjct: 721 PETGEELLALRPMGRTATGVRGIRLQDGQKVVSL-IVP------------------KG-D 760
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
GP +L +E+G GKR PL + G++ K S + VVG +D
Sbjct: 761 GP-VLTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGK----VVGAVQVDD---TN 812
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG-------KIQSASLISVTEPET 919
+++L+S GT+ R +V ++S+ R +GV L+R + G +I+ + + +
Sbjct: 813 EIMLISDQGTLVRTRVSEVSVVGRNTQGVRLIRT-VEGEHVVGLQRIEEVEELQAFDEDG 871
Query: 920 DLFLPSTSDKLATESGVSE 938
+L +P + + A E+ V E
Sbjct: 872 NLIIPEDASEQA-ETAVQE 889
>gi|289433380|ref|YP_003463252.1| DNA gyrase subunit A [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 841
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/835 (41%), Positives = 547/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL ++P+ +++EL+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+ +
Sbjct: 600 AVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGNK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I IR + R G +RL++GD++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|418009526|ref|ZP_12649320.1| DNA gyrase subunit A [Lactobacillus casei Lc-10]
gi|410555392|gb|EKQ29340.1| DNA gyrase subunit A [Lactobacillus casei Lc-10]
Length = 873
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 535/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|427412781|ref|ZP_18902973.1| DNA gyrase, A subunit [Veillonella ratti ACS-216-V-Col6b]
gi|425715597|gb|EKU78583.1| DNA gyrase, A subunit [Veillonella ratti ACS-216-V-Col6b]
Length = 825
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/841 (42%), Positives = 537/841 (63%), Gaps = 33/841 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I PV++ +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK
Sbjct: 10 KIEPVQIDKEMKSSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMAPNKPYKKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADID+DTV+F+PN+DES +EP++LPA++P LL+NG++GIAVGMATNIPPH
Sbjct: 130 MARITTEML-ADIDKDTVDFMPNYDESLQEPTVLPAKIPNLLINGSAGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+ D L LI NP+A + +L+ + GPDFPTG LI+G GI AY TGRG I +R +
Sbjct: 189 NLNEVADGLIMLIDNPDADVNDLMTAIKGPDFPTGALILGRDGIKKAYSTGRGSIKMRAR 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++ R +++ EIPYQ NK+ ++E IAEL +K +DGI+ +RDESDR GMRIV
Sbjct: 249 ATIEEMNKGKHR--IVVTEIPYQVNKARVIESIAELSRDKVIDGITALRDESDRRGMRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+EL+ P IV+N LY+ T LQ +F M+ ++DG P+ + LKEVL +L+ R V+ R
Sbjct: 307 VELRADVQPDIVLNKLYKHTQLQDTFGVIMLALVDGHPRVLTLKEVLTHYLNHRLGVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F L+EKQA AI
Sbjct: 367 RTQFELAKAEARAHILEGLLIALDHIDEVIATIRASETDEIAKNALMQKFGLTEKQAVAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER+K DE K L I L+ +L+S + +I+ E+ ++K ++ R
Sbjct: 427 LDMRLRRLTGLEREKIEDEYKQLEILIADLKAILASEERQRGIIKDELTDMKQKYGDKRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + D+ +LD D+I ++EM++ ++ +GY+KRM N + Q++G +G K + +D
Sbjct: 487 SEIT-IDTSELDVEDLIADEEMVITLTRQGYIKRMNANVYRNQHKGGVGVVGMKTKEDDY 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIP 681
+ R H+ +L+F+ G VY + Y++PE +RN+ GT ++ +L L+ GE +T++I
Sbjct: 546 VVQISHVRTHNTLLFFTTAGRVYRLKGYEVPEASSRNSRGTAIINVLPLNVGETVTTMID 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ L+M+T G +K+ S+ + +IR +G+ AI L D L V + + V +
Sbjct: 606 METVDHSLNLLMVTKQGVVKRTSIEEYQNIRRSGLNAISLADDDRLISVCLTSGNQDVLL 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ GM I + + +R + R+ +G ++L GD + +I
Sbjct: 666 GTRKGMAIRFNEEDVRLMKRSAQGVRGIKLNAGDDVVGAGVI------------------ 707
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAE 860
+ + +SE G GKR ++ L + G G K F D+ V V
Sbjct: 708 TESGEACQVFTISEEGFGKRNSEDAY---SLQKRGGKGTKNFRITDKTGDVVAVEIVT-- 762
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPET 919
+SDE V+L+S+ G + R ++DI++ + + GV L LE K+ S ++I+ E +T
Sbjct: 763 --DSDE-VMLISEQGKIIRFDMKDIAVKKGKAISGVKLQNLEGGDKVASVAIIAKDELDT 819
Query: 920 D 920
+
Sbjct: 820 E 820
>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
Length = 849
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/862 (42%), Positives = 547/862 (63%), Gaps = 43/862 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I V+L E M YI Y+MSV+ RALPDVRDGLKPV RRIL+AM EL KP +KC
Sbjct: 8 KIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GK+HPHGD+++Y +LV MAQD+S RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S M+ ADI++DTV+F PNFDE++KEP +LP+R P LL+NG +GIAVGMATNIPPH
Sbjct: 128 LSKISMEMM-ADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALI-----HNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NL E +D + +I N E T++EL+E + GPDFPTG +I+G GI AYRTGRG++
Sbjct: 187 NLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRTGRGKL 246
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR T++E + + R ++ E+PY NK+ L+EKIAELV++K ++GISD+RDES R
Sbjct: 247 KVRAVTDIETMPNGRHR--IVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSRE 304
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
G+R+VIELK+ A+P++V+N LY+ T LQ ++ M+ +++ QP + LK++L+ +L +
Sbjct: 305 GLRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLKHQE 364
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
VV RR RF+L++ +ER HI++G+++ LD++D VI I+R + + + A L + F L+E
Sbjct: 365 EVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLMETFGLTEV 424
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AI+DM LR LT LER+K +E LM++I +L+ +L+ K +L +I +E+ +++++
Sbjct: 425 QAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAILADEKLLLGVIREEIKLIRDKY 484
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG-KSVGK 616
R + L D ++ D+I + ++A+++ GY+KRM + F QNRG G K + K
Sbjct: 485 GDDRKTSL-GVDDDEITVEDLIKRENTVIAMTQLGYIKRMTMDNFRSQNRGGRGIKGMTK 543
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
L D +++ ++ HD++L+F+++G V+ + Y+IPE +R A GT L+ +L L GE++
Sbjct: 544 LD-EDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEASRIARGTALINLLQLEPGEKV 602
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
T+ IP+ ++ D++L M T NG +KK S+ + ++R TG++AI L DEL V+
Sbjct: 603 TATIPLEKYENDKYLFMATKNGMVKKTSIMEYINVRKTGLLAIGLREDDELIEVKVTDES 662
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
DL+ + SQ GM I D +R+ R + G + M L D + M +
Sbjct: 663 DLIYLVSQKGMSICFKQDNVRATGRTSMGVIGMDLDADDLIVGMQV-------------- 708
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
S G +L VSE G GKR L F GL YK + D+ V V
Sbjct: 709 -------SSQGEAVLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKIT--DKTGLVVGVKC 759
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
AED ++++++ G + R+ V ISI R GV L++L+ + AS+ + E
Sbjct: 760 VNAED-----ELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVV--ASIAKIRE 812
Query: 917 PETDLFLPSTSDKLATESGVSE 938
D TSD+ + E G++E
Sbjct: 813 DMKD--DEETSDEQSEEDGMTE 832
>gi|408789705|ref|ZP_11201350.1| DNA gyrase subunit A [Lactobacillus florum 2F]
gi|408520983|gb|EKK20993.1| DNA gyrase subunit A [Lactobacillus florum 2F]
Length = 824
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/843 (41%), Positives = 536/843 (63%), Gaps = 39/843 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI +EL +M S++ Y+MSV++ RALPDVRDGLKPV+RRIL+ M +LG++ KP+KK
Sbjct: 11 RITNIELSRKMKSSFLDYAMSVIVARALPDVRDGLKPVNRRILYGMDQLGVTPDKPYKKS 70
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 71 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEAR 130
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S ML D+++DTV+F PN+D +++EP +LPAR+P LLLNGA+GIAVGMATNIPPH
Sbjct: 131 LSRISLEML-RDLNKDTVDFAPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPPH 189
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ + L+ P+A++ EL+E +PGPDFPTGG++MG GI AY TGRG ITVR +
Sbjct: 190 NLSEVISAIHLLMKRPDASVTELMEVLPGPDFPTGGIVMGKSGIRKAYETGRGNITVRAR 249
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E+E K+ + + + E+PY NK+ L+E+IAELV +K ++GI+ I DESDR GMRI
Sbjct: 250 VEIET--EKNGKEIIAVTELPYMVNKAKLIERIAELVRDKRINGITAINDESDREGMRIA 307
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++ A +V+N+LY+LT +Q+S+S NM+ I DG PK + LKE+L +L+++ V+ R
Sbjct: 308 IDIRHDASAEVVLNNLYKLTLMQTSYSFNMLAISDGSPKVLSLKEILNEYLEYQVEVIVR 367
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + + R HI+ G++V LDN++ VI+I+R + + A L F+L +KQA AI
Sbjct: 368 RTRFNLKKAQARAHILVGLLVALDNIEAVIKIIRSSKTGDVAKQELITNFELDDKQAQAI 427
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K DE L+ QI +E+L+S + ++I E++E++ RF R
Sbjct: 428 LDMRLVRLTGLERDKITDEHDKLVAQIKDYQEILASHDRVNEIIYNELLEIQRRFGDKRR 487
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ L + ++D D+I + + + ++ GYVKR+ + F QNRG G+ + + +N
Sbjct: 488 TKLMIGEITNIEDEDLIEDKNVTITLTHNGYVKRITTDDFKAQNRG--GRGIKGMGINKD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + HD +L+F+++G VY +AY++PE R+A G P+V +L L E+I +I+
Sbjct: 546 DFIEHLLTSSTHDSLLFFTNKGKVYRLKAYEVPEYGRSAKGLPIVNLLHLDQHEKIQTIL 605
Query: 681 PVSEFAGDQ--FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
V+ A +Q L T G +K+ +L F +IR G+ AI L DE+ V ++
Sbjct: 606 NVANPAPNQPDQLFFTTKMGTVKRTALAEFVNIRNNGLKAINLREHDEVIKVLLVKSNQN 665
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD-IIPAALHKDLERTPED 797
+ +A++ G + D +R + R+ G +RL+ D + D +IP
Sbjct: 666 MILATRQGYAVSFQVDAVRLMGRSATGVRGVRLRPNDWVIGADRLIP------------- 712
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G + +SE+G GK+ P++ + P+ G G K +A+ + +VG +
Sbjct: 713 ---------GQQVFVISENGFGKQTPVAQY---PIKGRGGKGIK-TAQIKEKNGPLVGMN 759
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+ DE V+L++ G + R+ + D+S R GV L+RL+ K+ + ++++
Sbjct: 760 VV---AGDEDVMLITTQGVLIRMAIADVSQTGRATLGVHLIRLDDGSKVATMTIVAPAAE 816
Query: 918 ETD 920
E+D
Sbjct: 817 ESD 819
>gi|379794533|ref|YP_005324531.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356871523|emb|CCE57862.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 889
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 534/821 (65%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKIAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEENFLVFATKRGIVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
Length = 929
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/878 (42%), Positives = 539/878 (61%), Gaps = 58/878 (6%)
Query: 55 SRTPILASKDEERNGNGSVAT---------------VGPNVSPRIVPVELHE---EMTGS 96
S TP+ + E+ G VAT +G +V ++LHE EM S
Sbjct: 36 SGTPVYDPEAEDEAGMDDVATDEADDEVEMGSDNRGMGDDVDIHGGRLQLHEFGHEMEQS 95
Query: 97 YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPH 156
+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ KP KK A VGEV+GK+HPH
Sbjct: 96 FIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIGKYHPH 155
Query: 157 GDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADID 216
GD+AVYD++VR+AQ FS+R PL+ GHGNFG+ID D AAAMRYTE RL A LL D++
Sbjct: 156 GDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRL-ARPAMELLRDLN 214
Query: 217 QDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIH 276
+DT+++ N+DES +EP +LPAR P LL+NG+ GIAVGMATNIPPHNL E + +C LI
Sbjct: 215 KDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVCMLID 274
Query: 277 NPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMG 336
NP+AT+ +L+ MPGPDFPTG +IMG+ GI AY TGRG IT+R K VE +K+ R
Sbjct: 275 NPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVE--STKTGRNK 332
Query: 337 VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVN 396
++ E PY NK L EKIA+LV K ++GISD+RDES+R G+R+VIELK+GA P +V+N
Sbjct: 333 LVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEVVLN 392
Query: 397 SLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRH 456
+LY+ +ALQSSF + +++G P+ + L+E+LQ ++D + VV RR RF L++ + R H
Sbjct: 393 NLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARARAH 452
Query: 457 IVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERK 516
I+EG+++ LD++D VI I+R + +++ AS L + F +++Q AIL+M LRRLT LER
Sbjct: 453 ILEGLLLALDHIDEVISIIRSSRTDTQASERLIERFGFTKQQTTAILEMRLRRLTGLERD 512
Query: 517 KFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI 576
K +E L I E+LL+ + IL++I+ E+ E+ ++ R + + DA LD
Sbjct: 513 KIQEELDGLRRAIEYYEDLLADSRKILEVIKSEMSEIGEKYGDKRRTTISDAPV-VLDVE 571
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVL 636
D+I ++M++ ++ GYVKR+ T+ Q RG G L+ ND + D V HD+V+
Sbjct: 572 DLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVEDLFVASTHDYVM 631
Query: 637 YFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTM 696
+F++RG VY + +++P +R+A G+ LV +L L +GE T++I EF D++L+ T
Sbjct: 632 FFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREFPADEYLMFATA 691
Query: 697 NGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDII 756
NG +KK +++ + R GIIAI L DEL VR V + S+ G IL +
Sbjct: 692 NGMVKKTAMSDYDKSRRDGIIAINLKRDDELVNVRRVKPGQKVILCSEVGKAILFDESEV 751
Query: 757 RSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSES 816
R R+T G + LKD KM M+I +N G LL ++E
Sbjct: 752 RPTGRDTSGVRGITLKDDVKMLGMEI-----------------TNGNGD----LLVMTER 790
Query: 817 GHGKRVPLSSFRKLPLNRVGLIGYK----FSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
G+GKR P+ + P ++ G G S + L A VVG ++++VS
Sbjct: 791 GYGKRTPVFEY---PEHKRGGQGVATIAMTSKKGNLVACRVVG--------PQHELMIVS 839
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+ G V R+K DIS R +GV +M + + K+ + +
Sbjct: 840 EEGVVIRVKTADISKLGRATQGVKIMNMGENDKVSAVA 877
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ V+ +G+ KR+P++++R G+ G D + +FV + + V+
Sbjct: 580 VVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVEDLFVAS--------THDYVM 631
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMR-LELSGKIQSASLISVTE-PETDLFLPSTS 927
+ G V R+KV ++ I +R+ARG L+ L L ++I+ E P + + +T+
Sbjct: 632 FFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREFPADEYLMFATA 691
Query: 928 DKLATESGVSE 938
+ + ++ +S+
Sbjct: 692 NGMVKKTAMSD 702
>gi|386727828|ref|YP_006194211.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 71193]
gi|418980541|ref|ZP_13528320.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus DR10]
gi|379991711|gb|EIA13177.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus DR10]
gi|384229121|gb|AFH68368.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 71193]
Length = 895
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 549/859 (63%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 14 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 73
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 74 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 133
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 134 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 192
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 193 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 252
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 253 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 310
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 311 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 370
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 371 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 430
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 431 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 490
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 491 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 550
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 551 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 610
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 611 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 670
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 671 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 715
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 716 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 768
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 769 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 820
Query: 920 DLFLPSTSDKLATESGVSE 938
D T++ + S VSE
Sbjct: 821 D---DETNEDEQSTSTVSE 836
>gi|385218958|ref|YP_005780433.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
Length = 828
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/823 (43%), Positives = 542/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
DSM 15981]
gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
DSM 15981]
Length = 850
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/849 (42%), Positives = 532/849 (62%), Gaps = 42/849 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV ++ V+L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI++DTVNFVPNFDE+++EP +LP+R P LL+NGASGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E+V + +I N E T++EL+E + GPDFPTG I+G I AYRT
Sbjct: 182 NIPPHNLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GR +I VR T +E + + R +I+ E+PY NK+ L+EKIA+LV+ K +DGI+ I D
Sbjct: 242 GRSKIKVRAVTNIETMANGKSR--IIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMRI IEL+R + ++++N L + T LQ +F M+ ++D QPK + L ++L +
Sbjct: 300 ESNREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI+EG+++ LD++D VI I+R + + S A L + F
Sbjct: 360 LKHQEDVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LS+ QA AI+DM LR LT LER+K +E K L +I +L+ +L+ K +L +I+ E+
Sbjct: 420 GLSDAQAQAIVDMRLRALTGLEREKIENEYKELQARISELKAILADEKKLLTVIKDEITV 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D ++ D+IP+++ ++A++ GY+KRM + F QNRG GK
Sbjct: 480 IADKYGDDRRTAIGYDDDMSME--DLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRG--GK 535
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D ++ H +V+ F++ G VY +AY+IPE R A GT +V +L L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 595
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
E+IT+IIP+ E+ D++L M T G +KK + + ++R G+ AI L DEL V
Sbjct: 596 QPEEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCEYENVRKNGLQAIVLRENDELIEV 655
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + + ++NGM I +R R + G + MR +DGD++ M +
Sbjct: 656 KATDNQEDIFLITKNGMCIRFHETDVRVTGRVSMGVIGMRFEDGDEVIGMQM-------- 707
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VSE+G GKR ++ F G+I YK + +
Sbjct: 708 -------------ASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVICYKITEK----T 750
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
++G L +DG ++++++ G V R+ V DIS+ R GV LM ++ I+ AS
Sbjct: 751 GCLIGAKLVDDG---REIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVAS 807
Query: 911 LISVTEPET 919
+ V E T
Sbjct: 808 IAKVRESVT 816
>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
micraerophilus DSM 19965]
gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
micraerophilus DSM 19965]
Length = 812
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/835 (43%), Positives = 531/835 (63%), Gaps = 41/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IV L +M SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KPF+K
Sbjct: 7 KIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY+S VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTEMR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S A +L DID+DTV+F+PN+D S +EP +LP+R+P LL+NG+ GIAVGMATNIP H
Sbjct: 127 MAKIS-AEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPSH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD LCA+I NPE T+ EL+ Y+ GPDFPTG +IMG GI D YRTGRG I VR K
Sbjct: 186 NLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E + R +++ EIPYQ NK+ LVE IAEL + K ++GI+ +RDESDR+GMRIV
Sbjct: 246 TEIEEMSHGKNR--IVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+ +P I++N+L++ T L+ +F M+ ++DG P+ + LK+++ +L + V+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R+R++L + K + HI+EG+++ LD++D VI+ +R + ++ A +L +F+LSEKQ+ AI
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER+K + K +ME I LE+LLS R I+++++ E+IE+K +F R
Sbjct: 424 LDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ E + G D D++P++ M + +++ Y+KRM+ + +Q +G G S K++ +D
Sbjct: 484 TQFEKSTEG-FDLTDLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGMKMKDDDY 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSII- 680
+ + H+ +L+F+D G VY + P +R A G+ L+ + +L ER+T ++
Sbjct: 543 VWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERVTEMLD 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P G ++L+M+T GY+KK + + I GIIA++L GD L V D+ V
Sbjct: 603 PDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIPVVGDEDVI 662
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I S D IR++ R G ++L GD++ I A KD
Sbjct: 663 LGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKLSTGDEVVGAVI---ADEKD-------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+ +S G+ KR S++ N G+ +K E VV
Sbjct: 712 -----------IFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFE-------VVALVA 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDI-SIQARYARGVILMRLELSGKIQSASLI 912
A+D ++++V VS+ G + I S +A+ +GVIL RLE +I S ++
Sbjct: 754 ADD---NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVV 805
>gi|20090441|ref|NP_616516.1| DNA topoisomerase subunit A [Methanosarcina acetivorans C2A]
gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
acetivorans C2A]
Length = 929
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/826 (42%), Positives = 529/826 (64%), Gaps = 37/826 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+ + + +EM SYI Y+MSV++GRALPD RDGLKPVHRRILF+M E G++ KP+KK A
Sbjct: 73 VTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKESGITHDKPYKKSA 132
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+VLGK+HPHGD AVYDS+VRM QDFSLRYPLI G GNFGSID D AAAMRYTE R+
Sbjct: 133 RVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDGDEAAAMRYTEVRM 192
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E ML DI+++TV F PN+D S +EP +LPA+LP LL+NG++GIAVGMATN+ PHN
Sbjct: 193 DRIAEEML-TDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGIAVGMATNMAPHN 251
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D LI NPE + EL+ + GPDFPTG I+G GI AY TGRG + +R
Sbjct: 252 ISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAYTTGRGPVKIRAVA 311
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E++ L K R +I+ E+PYQ NK+ ++E IA+LV K + GISD+RDESDR G+R+VI
Sbjct: 312 EIQEL--KKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDESDREGIRVVI 369
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL +G + +V+N LY+ T ++++F + ++DG+P+++ LK++L+ +L++R +V++R
Sbjct: 370 ELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIYLEYRMEIVQKR 429
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+ L + +ER HI+EG+ + LDN+D V+ +++ + + A L D F L E QA AIL
Sbjct: 430 TLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLMDNFTLDEVQAKAIL 489
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LE KK ++E + L++ I +L+++L S + ++I E++ LK ++ R +
Sbjct: 490 DMRLQRLTGLETKKILEELENLIKLIAELKKILESDELKYEIIRTELLGLKEKYGDVRRT 549
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ + ++ D D+IP ++++ I+ GY+KR+ +T+++Q RG G +++ D +
Sbjct: 550 KIVHY-TEEVTDEDLIPEADVVVTITNSGYIKRIPLDTYSMQRRGGRGIIGMEMKEEDFV 608
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ + H+++L+F++RG +Y + Y+IPE +R + G +V +L L +GE + ++IPV
Sbjct: 609 ENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGKAIVNLLELREGEMVNAMIPVK 668
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EFA D++L+M T G KK L+ F + R GIIA+ L GDEL V V M S
Sbjct: 669 EFAEDRYLLMATRAGTTKKTPLSEFRNPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVS 728
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDG--DKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I S D +R + R RG M L DG D++ SMD++
Sbjct: 729 KKGKAIRFSEDDVRPMGRTARGVRGMIL-DGPEDEVVSMDLVDET--------------- 772
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF-SLAE 860
LL V+E+G GKR S + P++R G G + L FV S+AE
Sbjct: 773 ------TTLLSVTENGFGKRTEYSQY---PMHRRGGKGV-ITIVTNLRNGFVANVKSVAE 822
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
D E +++ S G + R+ +DISIQ R +GV +M ++ K+
Sbjct: 823 DDE----LMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKSGDKV 864
>gi|429727414|ref|ZP_19262186.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius VPI 4330]
gi|429152572|gb|EKX95390.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius VPI 4330]
Length = 815
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/844 (42%), Positives = 538/844 (63%), Gaps = 36/844 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+ + RI+P+E+ EEM SYI YSMSV++GRALPDVRDGLKPVHRRIL++M E G++ KP
Sbjct: 2 DTNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKP 61
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+VLGK+HPHGD++VY ++V+MAQDFS R L+ G GNFGS+D D AAMRY
Sbjct: 62 YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRY 121
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ L+ LL DI+++TV+F PNFDES +EP +LPAR P LL+NG++GIAVGMAT+
Sbjct: 122 TEARMSKLA-LELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATS 180
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D I N + + ELL+Y+ GPDFPT I+G GI AY+TGRG++
Sbjct: 181 IPPHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVK 240
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K E+E L K K+ +++ EIPYQ NK+ LVEKIA+LV+ K ++GISD+RDE++R G
Sbjct: 241 VRAKAEIEEL-PKGKQQ-IVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREG 298
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIELKR + +IV+N+LY+ + L+ +FS M+ I+DG PK + LK+VL +LD +
Sbjct: 299 MRIVIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKD 358
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F+L + R HI+EG+ + LDN+DRVI I+R + + A L +EF LSE Q
Sbjct: 359 VITRRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQ 418
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A AILDM L+RLT LER+K E K LM +I LE +L+ +L +I++E++ +K +
Sbjct: 419 AQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIKAKHE 478
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
PR + + A+ G+ D D+ +++ + ++ GY+KR+ +T+ Q RG G S R
Sbjct: 479 DPRRTQIIPAE-GEFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGISALTTR 537
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + + I + +L+F++RG VY AY++PE R + GT +V +L L+ GE++
Sbjct: 538 EEDFVRELISTTTYSTILFFTNRGRVYRLNAYEVPEGKRTSKGTAIVNLLQLNPGEKVAR 597
Query: 679 IIPVS--EFAGDQ--FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734
I + G++ +L++ T NG +KK ++ F +I +G+IAI L GDEL V
Sbjct: 598 TITFNSDNNTGNESDYLLLATKNGIVKKTQISEFKNINKSGLIAINLKDGDELIGVNMTD 657
Query: 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
+ V + ++N M I + +R + R G + L D++ SM++I
Sbjct: 658 GNQEVVLVTENAMSIRFNEADVRPMGRTATGVKGITLSKDDRVVSMNLI----------- 706
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
G LL VS++G GKR + +R G+ Y +++ +V
Sbjct: 707 ----------GEGDNLLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNITSK----TGKIV 752
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914
G SL + D+++++++ +G + RI+V +ISI R GV LMR + ++ S + I
Sbjct: 753 GSSLVNE---DDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVEVVSIAKIKA 809
Query: 915 TEPE 918
+ E
Sbjct: 810 EDIE 813
>gi|404491537|ref|YP_006715643.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
gi|77543706|gb|ABA87268.1| DNA gyrase, A subunit [Pelobacter carbinolicus DSM 2380]
Length = 835
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/834 (42%), Positives = 534/834 (64%), Gaps = 31/834 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AMHELG + KP+KK ARVV
Sbjct: 10 VNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYKKSARVV 69
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+AVYD++VR+AQDF++RYPL+ G GNFGS+D D AAAMRYTE R++ L
Sbjct: 70 GDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTEVRMDKL 129
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ LLAD++++TV+F PN+D+S +EP +LP + P LL+NG+ GIAVGMAT IPPHNLGE
Sbjct: 130 AHE-LLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPPHNLGE 188
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D L A+I +P ++L +PGPDFPT G I+G GI AY TGRG + +R + VE
Sbjct: 189 VIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRARALVE 248
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
D ++ R +++ EIPYQ NK+ L+EKIAELV+++ ++GISD+RDESDR G+R+V+ELK
Sbjct: 249 K-DRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVVVELK 307
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ P +++N LY++TA+QSSF M+ I++GQP+ + L+ VL+ F++ R +V RR F
Sbjct: 308 KDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTRRCIF 367
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + +E+ HI+EG + L+NLD VI I++++ + A L + F LSE QA AILDM
Sbjct: 368 ELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEIQAQAILDMR 427
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RLT +ER K + E + ++ I +L+E+L+S IL++I+ E+ E++ +F+ PR + +
Sbjct: 428 LHRLTGMERDKIMAEYREILALINRLKEILASEVEILKIIKSELSEIREKFADPRRTEIV 487
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D G L D+I +++M++ +S GY+KR + + Q RG G + + + D +
Sbjct: 488 D-HRGDLSLEDLIVDEDMVVTVSHSGYIKRNAVSLYRSQRRGGKGVTGMRPKEEDFVEQL 546
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ H VL F+D G VY + ++IP+ R + G +V +L L GE +TSI+PV EF
Sbjct: 547 FIASTHSFVLVFTDAGKVYWLKVHEIPQGGRASRGKAIVNLLQLQSGENVTSILPVREFT 606
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
++++ T NG +KK L +++ R+ GIIA+ + GD L R + V +ASQNG
Sbjct: 607 EGRYIIFATQNGIVKKTDLMAYANPRSGGIIALTIDEGDRLVSTRLSDGEMDVLLASQNG 666
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I R++ R +RG M L+ D++ M++ V ++
Sbjct: 667 KAIRFPEKDARAMGRTSRGVRGMALEGDDQVIGMEV-------------------VSDTT 707
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
L+ V+E G+GKR L +R+ G+I K S + VV L D D
Sbjct: 708 AATLVTVTEHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGK----VVDIKLIND---DF 760
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++ ++ G V R +V D+S+ R +GV LM LE +I ++ + E E D
Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERI--VAVAKLAEKEED 812
>gi|418309616|ref|ZP_12921168.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21331]
gi|365238422|gb|EHM79258.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21331]
Length = 889
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 549/859 (63%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 DLFLPSTSDKLATESGVSE 938
D T++ + S VSE
Sbjct: 815 D---DETNEDEQSTSTVSE 830
>gi|386746141|ref|YP_006219358.1| DNA gyrase subunit A [Helicobacter pylori HUP-B14]
gi|384552390|gb|AFI07338.1| DNA gyrase subunit A [Helicobacter pylori HUP-B14]
Length = 826
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 535/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
Length = 922
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/900 (42%), Positives = 536/900 (59%), Gaps = 74/900 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E LLADID++TV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKVAEE-LLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP TL E++E +PGPDFPTGG+I+G G+ AY TGRG I +R K
Sbjct: 195 LGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EKIAELV +K ++GISD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A IV+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R AP TA L
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVASLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I +LS
Sbjct: 433 LIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILS 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F TPR ++ ++ ++D+ D+I ++M++ +S GY+KR+
Sbjct: 493 SRLRIMGIVKNELSTLREEFVTPRRTVFGFGNA-EMDNEDLIVPEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWRLPIGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G LV +L L +GERIT+I+P+ E + + VM T G +++ L+ F +
Sbjct: 612 QSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRNKLSDFIQVNRN 671
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKD 773
G IA++L DE+ V CT D V + + NG I D+ + RN+ G + + D
Sbjct: 672 GKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRNSVGVRGINMVD 731
Query: 774 GDKMASMDIIPAALHKDLERTPEDSHS-NVKGSSGP------------------------ 808
GDK+ SM I+ +ER+ + N + S+G
Sbjct: 732 GDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDEDGDETELTDERY 791
Query: 809 --------WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
LL VSE G+GKR FR G G A D V + A
Sbjct: 792 AELAAREQMLLTVSEFGYGKRSSSYEFRI-----SGRGGKGIRATDPNKTVEIGKLVAAF 846
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
E+ +Q++LVS G + R+ + I I R +GV + K+ S IS +PE D
Sbjct: 847 PVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS--DPEDD 904
>gi|416840824|ref|ZP_11903998.1| DNA gyrase subunit A [Staphylococcus aureus O11]
gi|416845643|ref|ZP_11906098.1| DNA gyrase subunit A [Staphylococcus aureus O46]
gi|418949678|ref|ZP_13501915.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-160]
gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
gi|375378287|gb|EHS81693.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-160]
Length = 886
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
Length = 808
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/834 (41%), Positives = 533/834 (63%), Gaps = 37/834 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+ V L EM SY+ Y+MSV++GRALPD RDGLKPV RRI+++M+E G+ +P++K
Sbjct: 6 KIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKS 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVG VLG++HPHGD AVY++LVRMAQDFS RYPLI GHGNFGSID D AAMRYTE R
Sbjct: 66 AHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVR 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++ + L+ADI++D V+F+PN+D S KEP +LP ++P LL+NG+SGIAVGMATNIPPH
Sbjct: 126 LSPIA-SELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGEL+D L LI PEA ++ELL ++ GPDFPTGG I+G GI ++Y TG+G++ VRGK
Sbjct: 185 NLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVRGK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E ++K +IIKEIPY NKS L+ +IAELV+ + + GI D+RDESDR G+R+V
Sbjct: 245 IAIE--ETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELK+ DP IV+N LY+ T LQ++F M+ ILDGQPK LKE+L FL+ R +VV R
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + + R HI+EG+++ LD+LD VI I+R++ + A L +FKL++ QA AI
Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLKFKLTQIQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L +LT LE++K ++E + E I +LE++L K + ++I +E+ E+K +++ R
Sbjct: 423 LDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADERK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+++E+ + + DI+P++ ++ I++ Y+KR+ +T+ LQ RG GK + L N
Sbjct: 483 TLIEEEEKSDITIEDILPDNPEVVCITQDSYIKRLPLSTYQLQRRG--GKGLNTLANNND 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D ++ F+V + FS++G VY+ + Y++ E +R + G P+ + L++ + E+IT II
Sbjct: 541 DVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETSRQSKGVPIKEYLNIDNDEKITEII 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V+EF + + +T G +KK S+ F ++R +GI AI+L D L V + +D +
Sbjct: 601 SVNEFPKNLYFFFVTSKGIVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTSGNDEIM 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ G I +R + R +G + ++L+ D +I + K+
Sbjct: 661 IFTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDD-----SVIGGVIFKE---------- 705
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
++ V+ G GKRV + F +G+ K + + L V V
Sbjct: 706 ------SKQIVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITPKTGDLVGVKNV----- 754
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E+DE +++ ++ G + RI V +I I +R ++GV L++L + S L+
Sbjct: 755 --SENDE-ILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSIDLVE 805
>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
gi|384546275|ref|YP_005735528.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ED133]
gi|417897299|ref|ZP_12541236.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21235]
gi|418596831|ref|ZP_13160379.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21342]
gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
gi|341839799|gb|EGS81353.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21235]
gi|374396632|gb|EHQ67863.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21342]
Length = 886
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|418561811|ref|ZP_13126289.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21262]
gi|371975305|gb|EHO92600.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21262]
Length = 886
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|365901962|ref|ZP_09439785.1| DNA gyrase, A subunit [Lactobacillus malefermentans KCTC 3548]
Length = 836
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/853 (40%), Positives = 540/853 (63%), Gaps = 36/853 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S RI V+L + M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP+K
Sbjct: 8 SRRIEDVDLSKTMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYK 67
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+VLGK+HPHGD AVY+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 68 KSARVVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 127
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL ++ ML DI++DT+++ N+D +++EPS+LPAR P LL+NGASGIAVGMATNIP
Sbjct: 128 TRLSKIAMEML-RDINKDTIDYQDNYDGTEREPSVLPARFPNLLVNGASGIAVGMATNIP 186
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++ + L+ NP+AT +L+E +PGPDFPTGG++MG GI AY TGRG I VR
Sbjct: 187 PHNLSEVISAIHILMDNPDATTADLMEAVPGPDFPTGGVVMGKSGIRKAYETGRGSIIVR 246
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E + K+ + +I EIPY NK+ L+E+IAEL K ++GI+DI DESDR GMR
Sbjct: 247 AKVEIE--EQKNGKQRIIATEIPYMVNKAKLIERIAELAREKRIEGITDINDESDREGMR 304
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVI+++R A +++N+LY++T +Q+SFS NM+ I+ G PK + LKE+L +L+ + V+
Sbjct: 305 IVIDVRRDASAEVILNNLYKMTMMQTSFSFNMLAIVKGAPKILSLKEILVYYLEHQVEVI 364
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
+RR F+L + + R HI+EG+ + LD++D +I I+R + + A L +E+KL++KQA
Sbjct: 365 KRRTAFELKKAEARAHILEGLKIALDHIDAIISIIRNSQTGEVAKDRLMNEYKLTDKQAQ 424
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L RLT LER K E L+ I +E+L+SR + ++I QE+++++++F
Sbjct: 425 AILDMRLVRLTGLERDKVEKEYNGLISDIAGYKEILASRDRVNEIIYQELLDVQSKFGDK 484
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + L + L+D D+I +++++ ++ GY+KR+ + F QNRG G + +
Sbjct: 485 RRTELMVGEVLSLEDEDLIAEEDVIITLTHTGYIKRLPTSEFKAQNRGGRGVQGMGVHND 544
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + + HD +L+F++ G VY + Y+IPE R+A G P++ +L ++ GE++ ++I
Sbjct: 545 DFIEHLVSASTHDVLLFFTNAGKVYRMKGYEIPEYGRSAKGIPVINLLGINTGEQVQAVI 604
Query: 681 PVSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+S +Q +L T++G +K+ ++ F++IR+ G+ AI L DEL + T+ D +
Sbjct: 605 NISGGGDEQRYLFFTTVHGTVKRTPVDEFTNIRSNGLKAITLKENDELMNIAIITDSDNM 664
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ + G + +RS+ R+ G +RL+D D + DI+ P+
Sbjct: 665 IIGTHLGYAVSFKSGDVRSMGRSAAGVRGIRLRDDDYVIGADIL----------QPDSK- 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSL 858
+ +SE G GK+ P +++ P+ G G K + ++ + G +
Sbjct: 714 ----------VFVISEKGFGKQTPANAY---PIKGRGGKGIKTVNVSEKNGP--LTGLAT 758
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
DE ++LV+ G + R V +S R GV L+R++ K+ + +++ P
Sbjct: 759 V---SGDEDIMLVTNKGVMIRFGVEKVSETGRATLGVHLIRIDEDTKVATMAVVEKEAPA 815
Query: 919 TDLFLPSTSDKLA 931
+ P+ D+ A
Sbjct: 816 DE--QPTDEDETA 826
>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
Length = 812
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/835 (43%), Positives = 531/835 (63%), Gaps = 41/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IV L +M SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AM E G+ S KPF+K
Sbjct: 7 KIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFRKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD AVY+S VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTEMR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S A +L DID+DTV+F+PN+D S +EP +LP+R+P LL+NG+ GIAVGMATNIP H
Sbjct: 127 MAKIS-AEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPSH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD LCA+I NPE T+ EL+ Y+ GPDFPTG +IMG GI D YRTGRG I VR K
Sbjct: 186 NLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E + R +++ EIPYQ NK+ LVE IAEL + K ++GI+ +RDESDR+GMRIV
Sbjct: 246 TEIEEMSHGKNR--IVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+ +P I++N+L++ T L+ +F M+ ++DG P+ + LK+++ +L + V+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R+R++L + K + HI+EG+++ LD++D VI+ +R + ++ A +L +F+LSEKQ+ AI
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM LRRLT LER+K + K +ME I LE+LLS R I+++++ E+IE+K +F R
Sbjct: 424 LDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ E + G D D++P++ M + +++ Y+KRM+ + +Q +G G S K++ +D
Sbjct: 484 TQFEKSTEG-FDLTDLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGMKMKDDDY 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSII- 680
+ + H+ +L+F+D G VY + P +R A G+ L+ + +L ER+T ++
Sbjct: 543 VWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERVTEMLD 602
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P G ++L+M+T GY+KK + + I GIIA++L GD L V D+ V
Sbjct: 603 PDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIPVVGDEDVI 662
Query: 741 MASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ ++ GM I S D IRS+ R G ++L GD++ I A KD
Sbjct: 663 LGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKLSAGDEVVGAVI---ADEKD-------- 711
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+ +S G+ KR S++ N G+ +K E VV
Sbjct: 712 -----------IFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFE-------VVALVA 753
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDI-SIQARYARGVILMRLELSGKIQSASLI 912
A+D ++++V VS+ G + I S +A+ +GVIL RLE +I S ++
Sbjct: 754 ADD---NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVV 805
>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
Length = 886
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERNKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|420415072|ref|ZP_14914188.1| DNA gyrase, A subunit [Helicobacter pylori NQ4053]
gi|393034039|gb|EJB35100.1| DNA gyrase, A subunit [Helicobacter pylori NQ4053]
Length = 828
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/822 (43%), Positives = 538/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS TA AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPETAKNALIERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKIVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + ++L + D + +I
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVIS------------ 709
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 884
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
Length = 818
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/829 (43%), Positives = 530/829 (63%), Gaps = 41/829 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
EL EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AMH+ G+ +P K AR VG
Sbjct: 21 ELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMHDSGILPTRPHAKSARTVG 80
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD+AVYD++VR+AQDFS+R PL+ GHGNFGSID D AAAMRYTE RL A
Sbjct: 81 DVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGSIDGDSAAAMRYTEARL-AKP 139
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+D++TV++ PN+DES +EP +LPAR P LL+NG++GIAVGMATNIPPHNLGE
Sbjct: 140 AMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGSNGIAVGMATNIPPHNLGEA 199
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+D C ++ NP+ T+ EL++ +PGPDFPTGGLIMG GI DAY TGRG +TVR + ++
Sbjct: 200 IDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKDAYETGRGSLTVRSRHKI-- 257
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELK 386
++SK+ + ++I EIPYQ N++ L++KI ELV +K L IS++ D +DR S + I+I+LK
Sbjct: 258 IESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNVHDGADRNSPVDIIIDLK 317
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
A P +V+N LY+ T LQ F + ++DG P+ + L+E+L+ ++ + V+ RR RF
Sbjct: 318 SNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREMLRHYILHQEDVIVRRTRF 377
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + +ER HI+EG+++ LDN+D VI+I+R + ++ AS L++ F LSE Q AIL+M
Sbjct: 378 DLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQERFNLSEAQTAAILEMR 437
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LER K DE L E+I + +LS + ++I++E++E+K RF+TPR + L
Sbjct: 438 LRRLTGLERHKLEDELAELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTL- 496
Query: 567 DADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
G+ +DID+ I ++E+ + +++ GYVKR+ + + Q RG G L+ ND +
Sbjct: 497 ---CGEAEDIDVEDLIADEEVAVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFV 553
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V H ++L+FS G VY + Y+IPE +R+A GT +V +L L GE I ++I
Sbjct: 554 EHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATK 613
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F D++L+ T G +KK S+NL+ R G+IAI L D+L VR + + V M S
Sbjct: 614 DFPEDEYLMFGTEQGMVKKTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVS 673
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G I + +RS+ R+T G M + K+ ++I R D
Sbjct: 674 SAGKAIKWNEGEVRSMGRDTMGVRGMTVPANTKVLGLEI---------ARPDTD------ 718
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDG 862
LL ++E+G+GKR P+S + G+ +A+ L+A+ VV
Sbjct: 719 ------LLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTAKKGNLSAMKVV-------A 765
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
ESDE ++++S+SG + R K D+S R +GV +M + K+ + ++
Sbjct: 766 ESDE-LMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAVAI 813
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
V+++G+ KR+P+S++R+ G+ G D + +FV + ++ S
Sbjct: 518 VTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHLFV--------ASTHSYMLFFS 569
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE--PETDLFLPSTSDKL 930
+G V R+KV +I +R+ARG ++ L K +S + + T+ PE + + T +
Sbjct: 570 TAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPEDEYLMFGTEQGM 629
Query: 931 ATESGVS 937
++ ++
Sbjct: 630 VKKTSMN 636
>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii CCUG 10374]
Length = 857
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/840 (42%), Positives = 530/840 (63%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ + + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L L+S+ +KK A
Sbjct: 10 IIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ+FS+R PL+ G GNFGS+D D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ +EP++LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL+D + LI NP A +L+E++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E SKSK+ ++I E+PYQ NK+ L+E+IA+L ++K ++GIS++RDESDR G+R+VI
Sbjct: 249 HIE---SKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L E+L FL R +V+ RR
Sbjct: 306 ELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + ++ A L F LS QA AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSRFGLSAIQAQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + ++I++E+ E+K +FS PR +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIDQLELILRSEDRLNEIIKEELNEIKEKFSNPRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ ++ Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + Y+IPE +R A G +V +++L E+I +IIP S
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLINLRADEKIMAIIPTS 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA- 742
+F + L T NG +K+ SL+ FS+IR+ G+ AI L DE+ + T D M
Sbjct: 605 DFDEAKSLTFFTKNGIVKRTSLSEFSNIRSNGVRAIVLDDDDEIVTAKIATVDTKYLMVF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I D R R+TRG A++ K D D + +II
Sbjct: 665 TSLGQCIRFEVDKAREQGRSTRGVRAIKFKIDSDIVVDAEIID----------------- 707
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 708 ---SEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSPK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ ++ I R GVI++ ++ K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIEL 817
>gi|384548929|ref|YP_005738181.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 886
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|336429164|ref|ZP_08609132.1| DNA gyrase, A subunit [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336003080|gb|EGN33171.1| DNA gyrase, A subunit [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 855
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/842 (42%), Positives = 537/842 (63%), Gaps = 43/842 (5%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+ +I V+L E M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL KP
Sbjct: 4 NIFDKIHEVDLKETMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KCAR+VG+ +GK+HPHGD+++Y SLV MAQ++S RYPL+ GHGNFGS D D AAAMRY
Sbjct: 64 HRKCARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSTRYPLVDGHGNFGSEDGDGAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL +S ML ADI++DTV+FVPNFDE++KEP++LP+R P LL+NG SGIAVGMATN
Sbjct: 124 TEARLSKISMEML-ADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
IPPHNL E+VD + LI N + ++E+L+ + PDFPTGG+I+G G +AYRTG
Sbjct: 183 IPPHNLREVVDAVVKLIDNRVNEDRDTDMEEVLQIITAPDFPTGGIILGTRGSEEAYRTG 242
Query: 314 RGRITVRGKTEVELL-DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
RG++ VR T++E L + KS+ +I+ E+PY NK+ L+EKIAEL + K +DGI+D+RD
Sbjct: 243 RGKVRVRAVTDIETLPNGKSQ---IIVTELPYMVNKARLIEKIAELHKEKKIDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R G RIVIEL+R A+ ++++N LY+ T +Q +F M+ +++ +PK + L E+L+ +
Sbjct: 300 ESNREGTRIVIELRRDANANVILNLLYKHTQMQDTFGIIMLALVNNEPKVLNLLEMLKLY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI++G+++ LD++D VIRI+R + + A L + F
Sbjct: 360 LKHQEDVVTRRTKYDLNKAEERDHILQGLLIALDHIDEVIRIIRSSRNTQAAKENLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
+LS+ QA AI+DM LR LT LER+K +E K LM +I +L+ +L+ K +L +I +E++
Sbjct: 420 ELSDPQAQAIVDMRLRALTGLEREKLENEHKELMAKIAELKAILADEKLLLGVIREEILI 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
++ R S + D + D+IP D ++A++ GY+KRM + F QNRG GK
Sbjct: 480 TSLKYGDDRRSRI-GFDEYDISMEDMIPRDNTVIAMTNLGYIKRMTIDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D ++D ++ H +V++F++ G VY +AY+IPE +R A GT ++ +L L
Sbjct: 537 GIKGMQTIEEDFIADLLMTTTHHYVMFFTNYGRVYRLKAYEIPEASRTARGTAIINLLQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
+ GE+I++IIPV ++ D+ L M+T G +KK + +S++R G+ AI L DEL V
Sbjct: 597 NPGEKISAIIPVKDYEDDKNLFMVTRRGIVKKTPVMEYSNVRKNGLAAINLRDDDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ D + + +++GM I +R+ R + G + M L DGD++ M +
Sbjct: 657 KITDADTDLFLVTKHGMCIRFKETDVRATGRMSMGVIGMNLDDGDEIVGMQL-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VSE+G GKR L F G+ YK + +
Sbjct: 709 -------------DSQGDSLLIVSENGMGKRTYLEEFSVQKRGGKGVKCYKITEK----T 751
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+VVG D D ++++++ G + +++V DISI R GV ++ L+ K+ +
Sbjct: 752 GYVVGVKACND---DHEIMMITTEGIIIQLRVEDISILGRITSGVKMINLDKGIKVAQVA 808
Query: 911 LI 912
+
Sbjct: 809 KV 810
>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
gi|423101124|ref|ZP_17088828.1| DNA gyrase, A subunit [Listeria innocua ATCC 33091]
gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
gi|370792239|gb|EHN60116.1| DNA gyrase, A subunit [Listeria innocua ATCC 33091]
Length = 842
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL H+PE ++++L+E++PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|420494202|ref|ZP_14992771.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-16]
gi|393111003|gb|EJC11527.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-16]
Length = 828
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 539/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I +L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNSILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSNERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS------------ 709
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
TM7a]
Length = 745
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/681 (48%), Positives = 476/681 (69%), Gaps = 6/681 (0%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +E+ +Y+ YSMSV++ RALPDVRDGLKPVHRRILF+M E+G+S + PFKK AR+V
Sbjct: 43 VYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARIV 102
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+VLGK+HPHGD++VY ++VRMAQDF++RY LI GHGNFGSID D AAAMRYTE R+ +
Sbjct: 103 GDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAKI 162
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LLADI +DT+++ NFDES EP +LPA+LP LLLNGA+GIAVGMATNIPPHNLGE
Sbjct: 163 TEE-LLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+VD + ALI NPE ++ EL+ Y+ GPDFPTGG+I G GI DAY+TGRG++ V G+ E+E
Sbjct: 222 VVDGIVALIDNPEISIDELIGYIKGPDFPTGGIINGKQGIYDAYKTGRGKLRVAGRVEIE 281
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
SK+ R +++ E+PYQ NKS L+EKIA+LV+ K L GISD+RDE+DR G+RIVIELK
Sbjct: 282 T--SKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRDETDRDGIRIVIELK 339
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+G + +++NSLY+ T LQ++F M+ ++D P+ + LK+VLQ +L+ R V+ RR F
Sbjct: 340 KGEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEF 399
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG + LDN++ VIRI+R + + A L D+F+ SE QA AILDM
Sbjct: 400 ELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELIDKFEFSEIQAKAILDMR 459
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER K E LM+ I KL +LS I +I++E ++LK F R + +
Sbjct: 460 LQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEALKLKEDFGDERRTEIR 519
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
+A ++ D+I ++E+++ ++EKGYVKR+ +T+ Q RG IG + +D + D
Sbjct: 520 NA-RAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTVEDDVVKDM 578
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
+ +A D +L F+ +G V+S + Y+IPE + A G + I++L + E++++II V EF
Sbjct: 579 YIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLDNDEKVSTIIKVREFE 638
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC--TNDDLVAMASQ 744
++ L +T NG +KK L LFS+I G AI+L DE+ ++ + +D + A++
Sbjct: 639 KNRNLFFVTRNGVVKKSELTLFSNIMKAGKRAIRLNDDDEVMFIGLTSGSGEDEIFAATR 698
Query: 745 NGMVILSSCDIIRSLSRNTRG 765
NG+ I S +RS+ + G
Sbjct: 699 NGIAIKFSEKDVRSMGTSAVG 719
>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
Newman]
gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
Newman]
Length = 893
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 14 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 73
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 74 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 133
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 134 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 192
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 193 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 252
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 253 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 310
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 311 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 370
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 371 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 430
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 431 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 490
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 491 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 550
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 551 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 610
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 611 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 670
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 671 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 715
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 716 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 768
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 769 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 804
>gi|387779223|ref|YP_005754021.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus LGA251]
gi|344176325|emb|CCC86775.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus LGA251]
Length = 886
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 541/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
Length = 840
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/844 (41%), Positives = 533/844 (63%), Gaps = 41/844 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN+ ++ V+L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNIFDKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI ++TV+F PNFDE++KEP +LPAR P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKVSMEML-ADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHN-----PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E ++E+LE + GPDFPTG I+G +GI +AYRT
Sbjct: 182 NIPPHNLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR T++E L + R +I+ E+PY NK+ L+EK+AEL + K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSR--IIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ESDRSGMRIVIEL+R + ++++N L + T LQ +F M+ +++ +P+ + L ++L+ +
Sbjct: 300 ESDRSGMRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L+ + VV RR ++ L++ +ER HI++G+++ LDN+D VI+I+R + + A A L + F
Sbjct: 360 LEHQKEVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LS+ QA AI+DM LR LT LER+K +E K L +I +L +L+ K +L +I +E++
Sbjct: 420 GLSDAQAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAILADEKKLLGVIREEIML 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP++ ++A+++ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDDRRTSI-GFDEFDMSMEDLIPDENTIVAMTKLGYIKRMSVDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D I+ H ++++F++ G VY + Y IPE +R A GT ++ +L L
Sbjct: 537 GIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE IT+IIP+ E+ D+FL M T NG +KK + ++++R G+ AI L DEL V
Sbjct: 597 LPGESITAIIPMKEYDDDKFLFMATKNGMVKKTPMMEYANVRKNGLQAIVLREDDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + ++ G I + +R R + G + M+L D D++ M +
Sbjct: 657 KATDNSKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGMKLNDDDEVVGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
+ G LL VSE+G GKR P+ F G++ YK + +
Sbjct: 709 -------------DTQGEKLLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITEK----T 751
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+VG L D D +++++ G V RI V DIS+ R GV LM ++ I+ AS
Sbjct: 752 GKIVGAKLVHD---DHDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVAS 808
Query: 911 LISV 914
+ V
Sbjct: 809 IAKV 812
>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
gi|422337859|ref|ZP_16418828.1| DNA gyrase subunit A [Aggregatibacter aphrophilus F0387]
gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
gi|353344865|gb|EHB89165.1| DNA gyrase subunit A [Aggregatibacter aphrophilus F0387]
Length = 885
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/859 (42%), Positives = 539/859 (62%), Gaps = 56/859 (6%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHE G + KP++K A
Sbjct: 8 ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+AVYD+LVRMAQ FSLRY L+ G GNFGS+D D AAMRYTE R+
Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ LLAD+D++TVNFVPN+D S++ P +LP ++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 TKIAHE-LLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A I N + T+ EL+ ++PGPDFPT LI G GI +AY+TGRG+I VR K
Sbjct: 187 LGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E D K R +I+ EIPYQ NK+ L+EKIAE V+ K ++GIS +RDESD+ GMRIVI
Sbjct: 247 EIE-TDEKG-RETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A +V+N+LY LT +Q +F N+V + GQPK + LK++++AF+ R VV RR
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
F+L + +ER HI+EG+ + L N+D +I ++R+AP+ TA L
Sbjct: 365 TIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLA 424
Query: 489 -----------KDE--------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQI 529
DE + L+E QA AILD+ L++LT L + +DE K L+E I
Sbjct: 425 AAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484
Query: 530 LKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAIS 589
+L +L S + ++++I +E+ +++ +F+ PR + + A SG ++ D+I +++++ +S
Sbjct: 485 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEI-TAASGDINLEDLIAQEDVVVTLS 543
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
+GYVK + Q RG GKS K++ D + +V HD +L FS RG +Y +
Sbjct: 544 HEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P+ +R + G P+V IL L + ERIT+I+PV+ + D+F++M T G +KK++L FS
Sbjct: 604 YQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEEDKFVIMATAGGVVKKIALTEFS 663
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAM 769
R++GIIA+ L DEL V + + + S G V+ S +R++ R G +
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAMGRLATGVRGI 723
Query: 770 RL-------KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRV 822
+L D + D+ + L+ + S V + +L +++G+GKR
Sbjct: 724 KLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVVPKNNGEILTATQNGYGKRT 783
Query: 823 PLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880
L + N G+I K S + +AA V+ +Q++L++ +GT+ R
Sbjct: 784 KLEEYPTKSRNTKGVISIKVSERNGKVVAATQVI---------DTDQIMLITDAGTLVRT 834
Query: 881 KVRDISIQARYARGVILMR 899
+V ++SI R +GV L+R
Sbjct: 835 RVSEVSIIGRNTQGVRLIR 853
>gi|404477340|ref|YP_006708770.1| DNA gyrase subunit A [Staphylococcus aureus 08BA02176]
gi|404438829|gb|AFR72022.1| DNA gyrase subunit A [Staphylococcus aureus 08BA02176]
Length = 889
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 548/859 (63%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 DLFLPSTSDKLATESGVSE 938
D T++ + S VSE
Sbjct: 815 D---DETNEDEQSTSTVSE 830
>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
Length = 847
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/860 (42%), Positives = 535/860 (62%), Gaps = 56/860 (6%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AMHE+G KP+KK AR
Sbjct: 9 IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD++VRMAQDFS+RYPLI G GNFGS+D D AAMRYTE R+
Sbjct: 69 VVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ M LADI+++TV+F PN+DE + EP +LPAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIAHEM-LADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+++ AL+ + + EL +PGPDFPT G+++GN G ++AYR+GRGR+ +R + E
Sbjct: 188 TEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVMRARAE 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E D+KS R + + E+PYQ NK+ L+E+IAE+V+ K LDGISD+RDESD+SGMRI IE
Sbjct: 248 IE-TDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A+ +V+N+LY+ TALQS F+ NMV +LDG P+ +GL++ L+AFL R VV RR+
Sbjct: 307 LKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVVTRRS 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA------------------------PS 480
F L + ++R HI+EG+ V L NLD +I ++R A
Sbjct: 367 IFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLAE 426
Query: 481 NSTASAALK-DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
SA L+ D + LSE QA AILD+ L RLT LE+ K +E L+E+I +L E+L S
Sbjct: 427 RGEPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILGSD 486
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
++ +I E++ +++++ R S + AD+G + + D+I + M++ + GY+K
Sbjct: 487 ARLMAVIRAELVAIRDQYGDARRSEIV-ADTGVIANEDLIAEENMVVTFTHAGYIKAQPV 545
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
TFN Q RG GK + D + H VL+FS+ G V+ + Y++P+ R+A
Sbjct: 546 TTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRSA 605
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G P+V +LSL+ E IT+++PV EF Q++ M+T +G +KK L +S R+ GI AI
Sbjct: 606 RGKPIVNLLSLAPSEGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYSRPRSQGINAI 665
Query: 720 QLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMAS 779
L PGD L V + ++ GM + D +R + R RG + L D++ S
Sbjct: 666 NLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARGVRGISLDADDRVIS 725
Query: 780 MDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
I+ P+ +L + G+GK + +R+ G+I
Sbjct: 726 AQIV----------DPDQV-----------ILTATAKGYGKLTNVEEYRRTNRGGKGVIA 764
Query: 840 YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+ +A + VVG +LA ESDE ++LVS GT+ RI V+ I R A+GV L++
Sbjct: 765 IQTNARNGQ----VVG-ALAVK-ESDE-LMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQ 817
Query: 900 LELSGKIQSASLISVTEPET 919
L ++ +LI+ + E
Sbjct: 818 LAPDEQLAGLALIADAQEEA 837
>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
20601]
gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
20601]
Length = 840
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/830 (42%), Positives = 540/830 (65%), Gaps = 31/830 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K +KK
Sbjct: 8 RVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY ++VRMAQ FS R L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT+++ N+D S+KEP +LPAR P LL+NG+SGIAVGMATNIP H
Sbjct: 128 MSKIA-MELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPTH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
+LGE++D + AL +PE ++EL+EY+PGPDFPT GLIMG GI AY TGRG I VR +
Sbjct: 187 HLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIVVRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E + K+ + +II EIPYQ NK+ L+E+IAEL K +DGI+DI DESDRSGMRIV
Sbjct: 247 VDIE--EKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE++R S+++N+LY++TALQ++F NM+ ++D PK + LK++L +L+ + V+ R
Sbjct: 305 IEVRRDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LDN+D VI ++R + + TA L +F+LS+KQA AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTKFQLSDKQAQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K +E + LM I L+ +L+ + IL++I +E+ E+K +++ R
Sbjct: 425 LDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEERILEIIREELEEIKIKYADKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D ++D D+IP +E+ + ++++GY+KR+ +T+ Q RG G +D
Sbjct: 485 TEILTGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + +HD +L+F++ G VY A+ Y+IPE R A G PL+ +L + E++ ++I V
Sbjct: 545 VEHLVAASSHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPLINLLGIESQEQVNAVINV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
SEF + L T +G +K+ ++ F+ IR +G+ A+ L DEL V+ + + +A
Sbjct: 605 SEFTENSHLFFTTKHGVVKRTDISQFAKIRQSGLRAVDLRENDELISVQITDGNKNIIIA 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I + IR + R G +RL++ D++ M+I+ ED
Sbjct: 665 TKQGQSIYFPENNIRVMGRTAAGVRGIRLREDDEVIGMEIL------------EDDQK-- 710
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L V+E G+GK+ P + + PL G +G K V +++ G
Sbjct: 711 -------VLIVTEKGYGKQTPAAQY---PLRNRGGMGVKTVTITEKNGNLVAMKTVS--G 758
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
E D ++L++ SG + R ++ +S R A GV L+RL+ + K+ + + +
Sbjct: 759 EED--IMLMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKV 806
>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
gi|415687299|ref|ZP_11451226.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus CGS01]
gi|418318247|ref|ZP_12929656.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21232]
gi|418569358|ref|ZP_13133691.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21283]
gi|418641283|ref|ZP_13203496.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-24]
gi|419773368|ref|ZP_14299377.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CO-23]
gi|422742289|ref|ZP_16796296.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745338|ref|ZP_16799281.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
gi|440708264|ref|ZP_20888934.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21282]
gi|81695633|sp|Q5HJZ0.1|GYRA_STAAC RecName: Full=DNA gyrase subunit A
gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus CGS01]
gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
gi|365243570|gb|EHM84244.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21232]
gi|371985753|gb|EHP02807.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21283]
gi|375019443|gb|EHS12997.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-24]
gi|383972941|gb|EID88964.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CO-23]
gi|436505156|gb|ELP41101.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21282]
Length = 887
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
Length = 879
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/893 (40%), Positives = 536/893 (60%), Gaps = 69/893 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAMHEL K +KK AR
Sbjct: 9 LPISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ ML D+D++TV+F PN+D S+ EP ++PAR+P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KIGHQML-EDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++ AL+ NP ++++L+ Y+P PDFPT GLI G G+ + Y+TGRGR+ +R +T
Sbjct: 188 NEVIAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVIMRARTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E ++ + R +I+ EIPYQ NK L+EKIAELV K ++GISDIRDESD+SGMRIVIE
Sbjct: 248 FEDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIE 307
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG +++N+LY+ T LQ +F NMV ++DGQP+ + LK++L+ FL R V+ RR
Sbjct: 308 LKRGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRREVITRRT 367
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
++L + +ER HI+EG+ V L N+D +I +++ AP+ + A L +
Sbjct: 368 VYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVVEEMLVR 427
Query: 492 ---------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
++LS+ QA AIL++ L+RLT LE+ K V E K +M +IL
Sbjct: 428 AASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKIL 487
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I ++I E++ ++ +F R S + + +L D+I +M++ +S
Sbjct: 488 DLLDILAKPERITEIIVTELVAIREQFGDERRSEI-ILQTHELSLEDLITPQDMVVTLSH 546
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+K + Q RG GK ++ D + + HD +L FS+RG Y + Y
Sbjct: 547 GGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCYWLKVY 606
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
+ P+ +R + G P+V + L +GERI +++PV EFA D+F+ M T G +KK L+ FS+
Sbjct: 607 EAPQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFADDKFIFMATRAGTVKKTPLSDFSN 666
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIA+ L+ D L V T + + S G + + +R + R RG M+
Sbjct: 667 PRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPMGRGARGVRGMK 726
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+ G + S+ V S +L +E+G GKR L+ FR
Sbjct: 727 LQAGQAVISL--------------------LVAESDQQTVLVATENGFGKRTVLADFRH- 765
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
+ G G K A+ V V+G L +D +++V+L++ G + R +V +I R
Sbjct: 766 --SGRGTQGVKAIADSERNGV-VIGAKLVDD---NDEVMLITTGGVLIRTRVSEIRGMGR 819
Query: 891 YARGVILMRLE----LSG--KIQSASLISVTEPETDLFLPSTSDKLATESGVS 937
+GV L+ L+ L+G K+ + + E E+++ P T D +E V+
Sbjct: 820 ATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVAPETGDAAPSEGDVA 872
>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
Length = 878
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/876 (41%), Positives = 542/876 (61%), Gaps = 67/876 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM LG KP
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LL+D+D++TV+FVPN+D +++ P ++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMARIAHE-LLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I + +++ L+ Y+PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D KS R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVEA-DEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N LY T +Q SF NMV + GQPK M LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ V L N+D +I ++R A + + A AAL
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ QI L +L S + ++++I +E+ +K +++ R + + +S ++ D+I +++
Sbjct: 481 LLTQIAALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITH-NSADINIEDLISQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWLKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S G V+ S +R++ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L+D D++ S+ I+P +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLQDDDRVVSL-IVP------------------RGEGD--ILTVTENGYGKRTAI 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K S + VVG A ++ +Q+++++ +GT+ R +V +
Sbjct: 759 NDYPTKSRATKGVISIKVSERNG----NVVG---AVQVDTTDQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+SI R +GV L+R ++ L V EP D
Sbjct: 812 VSIVGRNTQGVTLIRTAEEERV--VGLQRVAEPVED 845
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 612 KSVGKLRVN----DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
+S G + VN D + + + V+ FS G V + R A G V+
Sbjct: 667 RSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATG---VRG 723
Query: 668 LSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP-- 723
++L D +R+ S+I V GD ++ +T NGY K+ ++N + S T G+I+I++
Sbjct: 724 INLQDDDRVVSLI-VPRGEGD--ILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERN 780
Query: 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
G+ + V+ T D ++ M + G ++ + + + RNT+G +R + +++ + +
Sbjct: 781 GNVVGAVQVDTTDQIM-MITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRV 839
Query: 784 PAALHKD 790
+ D
Sbjct: 840 AEPVEDD 846
>gi|420490876|ref|ZP_14989458.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-13]
gi|420524719|ref|ZP_15023126.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-13b]
gi|393106336|gb|EJC06880.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-13]
gi|393130990|gb|EJC31414.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-13b]
Length = 828
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/823 (43%), Positives = 543/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS TA AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPETAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDCLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + +KIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVHKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
Length = 874
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/837 (42%), Positives = 533/837 (63%), Gaps = 58/837 (6%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+PV++ +EM YI Y+MSV++ RALPDVRDGLKPVHRRIL+AM EL LS K ++K
Sbjct: 8 KIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GK+HPHGD ++YD++VR+AQ+F+ RYPL+ GHGNFG++D D AAAMRYTE R
Sbjct: 68 ARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ M L+DID++TV+F PNFDES +EP++LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 128 MSKLTMYM-LSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHN----------PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
N+GE++ + +I N E ++L+E + GPDFPTGG I+G GI AYRT
Sbjct: 187 NMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQAYRT 246
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
G+G++ +R KTE+E + + + +II EIPYQ NKS L+EKIAELV+ K +DGI+ IRD
Sbjct: 247 GKGKVKIRAKTEIE--EMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRD 304
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ESDR GMRIVIEL+R + +I++N LY+ + LQ +FS NM+ +++G+P LKE+L+A+
Sbjct: 305 ESDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLEAY 364
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEG--IMVGLDNLDRVIRIVREAPSNSTASAALKD 490
LD + V+ RR F+L + + R HI+EG I++G D +D VI ++R + + + A L +
Sbjct: 365 LDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIE 424
Query: 491 EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEV 550
+ LSE QA AI+DM LR LT LE K E L ++I L+ LL +L++I++E+
Sbjct: 425 KIGLSEIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDKIAYLKSLLEHEDQLLKVIKEEL 484
Query: 551 IELKNRFSTPR---LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNR 607
I ++ +F+ PR LS+L+D ++D D+I +E+++ I+ GY+KR T+ Q R
Sbjct: 485 IVVREKFTDPRRSELSLLDD----EIDIEDLIDEEEVVVTITHFGYIKRXPLVTYKEQKR 540
Query: 608 GTIGKSVGKLRVNDAMSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTP 663
G G+ V + VN DFI D +++F+++G Y +AYKIPE +R A G
Sbjct: 541 G--GRGV--IGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKIKAYKIPEASRTARGLA 596
Query: 664 LVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723
+V +L L+ E+I+++ PV + +++L M+T G IKK ++ F++I+ GIIA+ +
Sbjct: 597 IVNLLHLNVDEKISAVFPVKQNEHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQD 656
Query: 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783
DEL V T+ D + +A++ G+ I+ IR R +G A+ L D +I
Sbjct: 657 ADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVRAINLSKEDY-----VI 711
Query: 784 PAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843
A + K+ G +L +++G GKR + F+ GLI YK
Sbjct: 712 SATIPKE----------------GEQILIATKNGIGKRTRIDEFKSQRRGGKGLIIYK-- 753
Query: 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+D+ V + +G +++++ G + RIKV IS RYA+GV L+ L
Sbjct: 754 VDDKTGDVVAITSVSDSNG-----LLMITSEGVIIRIKVSQISSLGRYAKGVKLINL 805
>gi|421719777|ref|ZP_16159061.1| DNA gyrase, A subunit [Helicobacter pylori R046Wa]
gi|407221100|gb|EKE90905.1| DNA gyrase, A subunit [Helicobacter pylori R046Wa]
Length = 832
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/819 (43%), Positives = 535/819 (65%), Gaps = 32/819 (3%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+ +K
Sbjct: 14 TKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 73
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRYTE
Sbjct: 74 KSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTE 133
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+IP
Sbjct: 134 ARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 192
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+ VR
Sbjct: 193 PHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 252
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G+R
Sbjct: 253 AKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIR 309
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
+ IELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +++
Sbjct: 310 VAIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTII 369
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR F+L + K R HI+EG ++ LDN+D ++R+++ + S TA AL + F LSE Q+
Sbjct: 370 IRRTIFELEKAKARAHILEGYLIALDNIDGIVRLIKTSQSPETAKNALMERFTLSEIQSK 429
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS+P
Sbjct: 430 AILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP 489
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G +
Sbjct: 490 RRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYED 548
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SLS E+I + +
Sbjct: 549 DFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLSPDEKIMATL 608
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLV 739
+F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N +
Sbjct: 609 STKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVGAKVVDKNAKHL 668
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 669 LIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS--------------- 713
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 714 -----DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVISV 764
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 765 DDENLD--LMILTASAKMIRVSIKDIRETRRNASGVKLI 801
>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
BAA-613]
gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
BAA-613]
Length = 848
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/849 (41%), Positives = 536/849 (63%), Gaps = 42/849 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV ++ V+L + M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL K
Sbjct: 3 PNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI++DTV+FVPNFDE+++EP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E +L+E++E + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GR +I VR T +E + + R +I+ E+PY NK+ L+EKIA+LV+ K +DGI+ I D
Sbjct: 242 GRAKIKVRAVTNIETMANGKSR--IIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMRI IEL+R + ++++N L + T LQ +F M+ +++ QPK + L ++L+ +
Sbjct: 300 ESNREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI++G+++ LDN+D VIRI+R A + + A L + F
Sbjct: 360 LKHQEEVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LS+ Q+ AI+DM LR LT LER+K +E + L +I +L+ +L+ K +L +I E++
Sbjct: 420 GLSDAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADEKKLLTVIRDEIMI 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D ++ D+IP+++ ++A++ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDDRRTAIGYDDDMSME--DLIPDEDTIIAMTHLGYIKRMDVDNFRSQNRG--GK 535
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D ++ H ++++F++ G VY +AY+IPE R A GT ++ +L L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 595
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
E+IT+IIP+ EF D++L M T NG +KK + + +R G+ AI L GDEL V
Sbjct: 596 MPEEKITAIIPMREFNDDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLRDGDELIEV 655
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + ++ GM I + +R R + G + MR +D D++ M +
Sbjct: 656 KATDNSQDILLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEDDDEVIGMQM-------- 707
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VSE+G GKR ++ F G+I YK + D+
Sbjct: 708 -------------QSQGDSLLVVSENGMGKRTMITEFSAQNRGGKGVICYKCT--DKTG- 751
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
++VG L DG ++++++ G + R+ V DIS+ R GV LM ++ I+ AS
Sbjct: 752 -YLVGAKLVNDG---REIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDIKVAS 807
Query: 911 LISVTEPET 919
+ V E T
Sbjct: 808 IAKVRESVT 816
>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
gi|385788867|ref|YP_005819976.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
gi|387870749|ref|YP_005802120.1| DNA gyrase subunit A [Erwinia pyrifoliae DSM 12163]
gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
Length = 878
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/857 (41%), Positives = 542/857 (63%), Gaps = 69/857 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P ++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHN+ E+++ A I + T++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE+ D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ G
Sbjct: 242 IRARGEVEV-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ+SF NMV + GQPK M LK++L+AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
V+ RR F+L + ++R HI+E + V L N+D +I ++R AP+ + A A L
Sbjct: 361 VITRRTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 SAMLERAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ QI +L +L S + ++++I +E+ ++++F R + + A++ ++ D+I +++
Sbjct: 481 LLTQIAELLRILGSSERLMEVIREELELIRDQFGDKRRTEIT-ANTADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+A + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L DEL V + D + S G V+ + +R++ R
Sbjct: 660 LTDFSRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTMGRTAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L +GD++ S+ + P D + ++ V+++G+GKR
Sbjct: 720 GVRGIKLAEGDRVVSLIV------------PRDDGA---------IMTVTQNGYGKRTAN 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
+ G+I K + + + AV VV DG +Q+++++ +GT+ R +V
Sbjct: 759 VEYPTKSRATQGVISIKVTERNGPVIGAVQVV------DG---DQIMMITDAGTLVRTRV 809
Query: 883 RDISIQARYARGVILMR 899
++S+ R +GVIL+R
Sbjct: 810 SEVSVVGRNTQGVILIR 826
>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
Length = 887
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/857 (42%), Positives = 543/857 (63%), Gaps = 69/857 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P+++P R+P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++ A I + T++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+K+ R +II EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ G
Sbjct: 242 IRARGEVE-TDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+KR A +V+N+LY LT LQ+SF NMV + GQPK M LK++L+AF+ R
Sbjct: 301 MRIVVEVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA----------- 487
VV RR F+L + ++R HI+E + + L NLD +I ++R A + + A A
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNV 420
Query: 488 ----------------LKDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
L+DEF L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S + ++++I +E+ ++++F R + + A++ ++ D+I +++
Sbjct: 481 LLDQIAELIRILESSERLMEVIREELELIRDQFGDKRRTEI-TANTADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+A + M T G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATACGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L DEL V D + S G V+ + +R++ R
Sbjct: 660 LTEFSRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAMGRTAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L + D++ S+ I+P +G+ ++ V+++G+GKR
Sbjct: 720 GVRGIKLAENDRVVSL-IVPQE----------------EGA----IMTVTQNGYGKRTNT 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
S + G+I K + + + AV VV +SD Q+++++ +GT+ R +V
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVV--------DSD-QIMMITDAGTLVRTRV 809
Query: 883 RDISIQARYARGVILMR 899
++S+ R +GVIL+R
Sbjct: 810 SEVSVVGRNTQGVILIR 826
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
LR D + + D + FS G V + R A+G V+ + L++ +R+
Sbjct: 676 LRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAMGRTASG---VRGIKLAENDRV 732
Query: 677 TS-IIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP--GDELKWVR 731
S I+P E A ++ +T NGY K+ + + + S T G+I+I++ G + V+
Sbjct: 733 VSLIVPQEEGA----IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERNGPVIGAVQ 788
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
+D ++ M + G ++ + + + RNT+G + +R + + + +
Sbjct: 789 VVDSDQIM-MITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGL 836
>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus TCH70]
gi|379013371|ref|YP_005289607.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VC40]
gi|385780304|ref|YP_005756475.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 11819-97]
gi|417647963|ref|ZP_12297793.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
gi|418312304|ref|ZP_12923814.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21334]
gi|418574015|ref|ZP_13138195.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21333]
gi|418643997|ref|ZP_13206149.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-55]
gi|418905551|ref|ZP_13459578.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418933016|ref|ZP_13486842.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC128]
gi|418986991|ref|ZP_13534667.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1835]
gi|421148835|ref|ZP_15608494.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|440736073|ref|ZP_20915674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443638076|ref|ZP_21122133.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21196]
gi|448740838|ref|ZP_21722812.1| DNA gyrase A subunit [Staphylococcus aureus KT/314250]
gi|38604895|sp|Q8NKW8.1|GYRA_STAAW RecName: Full=DNA gyrase subunit A
gi|59797749|sp|Q6GD84.1|GYRA_STAAS RecName: Full=DNA gyrase subunit A
gi|114149316|sp|Q2G2Q0.1|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus TCH70]
gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
gi|364521293|gb|AEW64043.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
11819-97]
gi|365238652|gb|EHM79484.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21334]
gi|371980716|gb|EHO97918.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21333]
gi|374362068|gb|AEZ36173.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VC40]
gi|375026977|gb|EHS20354.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-55]
gi|377721003|gb|EHT45148.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1835]
gi|377764851|gb|EHT88701.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377773190|gb|EHT96936.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC128]
gi|394330937|gb|EJE57025.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|436429840|gb|ELP27204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443410049|gb|ELS68528.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21196]
gi|445548369|gb|ELY16621.1| DNA gyrase A subunit [Staphylococcus aureus KT/314250]
Length = 887
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|418885321|ref|ZP_13439477.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1150]
gi|377729263|gb|EHT53359.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1150]
Length = 889
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLCKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|402829767|ref|ZP_10878640.1| DNA gyrase, A subunit [Slackia sp. CM382]
gi|402283434|gb|EJU31948.1| DNA gyrase, A subunit [Slackia sp. CM382]
Length = 818
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/829 (43%), Positives = 529/829 (63%), Gaps = 41/829 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
EL EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AMH+ G+ +P K AR VG
Sbjct: 21 ELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMHDSGILPTRPHAKSARTVG 80
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD+AVYD++VR+AQDFS+R PL+ GHGNFGSID D AAAMRYTE RL A
Sbjct: 81 DVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGSIDGDSAAAMRYTEARL-AKP 139
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+D++TV++ PN+DES +EP +LPAR P LL+NG++GIAVGMATNIPPHNLGE
Sbjct: 140 AMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGSNGIAVGMATNIPPHNLGEA 199
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+D C ++ NP+ T+ EL++ +PGPDFPTGGLIMG GI DAY TGRG +TVR + ++
Sbjct: 200 IDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKDAYETGRGSLTVRSRHKI-- 257
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELK 386
++SK+ + ++I EIPYQ N++ L++KI ELV +K L IS++ D +DR S + I+I+LK
Sbjct: 258 IESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNVHDGADRNSPVDIIIDLK 317
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
A P +V+N LY+ T LQ F + ++DG P+ + L+E+L+ ++ + V+ RR RF
Sbjct: 318 SNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREMLRHYILHQEDVIVRRTRF 377
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + +ER HI+EG+++ LDN+D VI+I+R + ++ AS L++ F LSE Q AIL+M
Sbjct: 378 DLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQERFNLSEAQTAAILEMR 437
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LER K DE L E+I + +LS + ++I++E++E+K RF+TPR + L
Sbjct: 438 LRRLTGLERHKLEDELAELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTL- 496
Query: 567 DADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
G+ +DID+ I ++E+ + +++ GYVKR+ + + Q RG G L+ ND +
Sbjct: 497 ---CGEAEDIDVEDLIADEEVAVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFV 553
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V H ++L+FS G VY + Y+IPE +R+A GT +V +L L GE I ++I
Sbjct: 554 EHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATK 613
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F D++L+ T G +KK S+NL+ R G+IAI L D+L VR + + V M S
Sbjct: 614 DFPEDEYLMFGTEQGMVKKTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVS 673
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G I + +RS+ R+T G M + K+ ++I R D
Sbjct: 674 SAGKAIKWNEGEVRSMGRDTMGVRGMTVPANTKVLGLEI---------ARPDTD------ 718
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDG 862
L ++E+G+GKR P+S + G+ +A+ L+A+ VV
Sbjct: 719 ------LFVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTAKKGNLSAMKVV-------A 765
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
ESDE ++++S+SG + R K D+S R +GV +M + K+ + ++
Sbjct: 766 ESDE-LMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAVAI 813
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
V+++G+ KR+P+S++R+ G+ G D + +FV + ++ S
Sbjct: 518 VTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHLFV--------ASTHSYMLFFS 569
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE--PETDLFLPSTSDKL 930
+G V R+KV +I +R+ARG ++ L K +S + + T+ PE + + T +
Sbjct: 570 TAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPEDEYLMFGTEQGM 629
Query: 931 ATESGVS 937
++ ++
Sbjct: 630 VKKTSMN 636
>gi|421718316|ref|ZP_16157615.1| DNA gyrase, A subunit [Helicobacter pylori R038b]
gi|407221582|gb|EKE91386.1| DNA gyrase, A subunit [Helicobacter pylori R038b]
Length = 828
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 537/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFDLEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSNERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGTKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVIS------------ 709
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
Length = 827
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/820 (43%), Positives = 518/820 (63%), Gaps = 34/820 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VPV + +E+ S+I Y+MSV++ RALPDVRDGLKPV RRIL+AM ELGL R + K
Sbjct: 9 QVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKYVKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
A VVGEV+ K+HPHGD A+YD++VRMAQD+++RY L+ G GNFGSID DPAAA RYTE R
Sbjct: 69 AGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +++EA +LADID++TV+F NFD + EP +LP+ +P +L+NGASGIAVGMATNIPPH
Sbjct: 129 MTSVAEA-ILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD L A++ NPE TL EL+E++ GPDFPTGG +M GI A+ TGRG I +R K
Sbjct: 188 NLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGG-VMSRTGIRQAFETGRGSIRLRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
E + + +++ EIPYQ NK+ L++ A LV +K ++ I++IRDESDR GMRIV
Sbjct: 247 VRFE---ERGRGTSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
ELKRGA P +V+N LY+ T LQS+FS N + I+D P+ + LK+ L FLD R VV R
Sbjct: 304 FELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + +ER HI+EG ++ L+ LD VI ++R + TA L EF L+E QA A+
Sbjct: 364 RTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAEFGLTEVQAQAV 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER+K E + L +I +LE +L + ++I++E+ E+K F+ R
Sbjct: 424 LDMRLQRLTGLEREKLQGEYRELQAEIARLEAILGDANELRKVIKRELREVKKNFADARR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + D DS + D+I + M++ ++ GY+KR + Q RG G + K + +D
Sbjct: 484 TQISDNDS-DISKEDLIAEEHMVVTLTRGGYIKRTPLAAYRAQARGGRGVNAQKAKEDDI 542
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
S IV HD++L+F+DRG VY + Y +PE R A G+ L IL L++ ER+ +++ V
Sbjct: 543 NSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAERAARGSHLRNILPLAEDERVATVLSV 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+F + + V T G IKK ++ + ++ +G+IAI L+ GDEL VR + V +A
Sbjct: 603 RDFNAEGYFVFATRQGMIKKTAIREYGNLNASGLIAINLIEGDELVSVRHGWDGAHVVLA 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G I +R R T+G +RLK D + S+ +I D E
Sbjct: 663 TREGQAIRFPEADVRDTGRATQGVRGIRLKPNDALVSLSVIAGEHLGDAE---------- 712
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAE 860
LL V+E G+GKR PLS + G+I + + + ++ +V G
Sbjct: 713 -------LLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTPKTGPLVSLDYVRG----- 760
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
DE+++++S+ G + R +V ++S R ++GV +MRL
Sbjct: 761 ----DEELLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRL 796
>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
gi|417801549|ref|ZP_12448637.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21318]
gi|417893860|ref|ZP_12537883.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21201]
gi|417900721|ref|ZP_12544600.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21266]
gi|418567387|ref|ZP_13131751.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21272]
gi|418661945|ref|ZP_13223505.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-122]
gi|418913294|ref|ZP_13467268.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|443636165|ref|ZP_21120280.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21236]
gi|38605032|sp|Q99XG5.1|GYRA_STAAN RecName: Full=DNA gyrase subunit A
gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
gi|334276593|gb|EGL94847.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21318]
gi|341847035|gb|EGS88221.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21266]
gi|341853367|gb|EGS94248.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21201]
gi|371982032|gb|EHO99192.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21272]
gi|375037434|gb|EHS30468.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-122]
gi|377759337|gb|EHT83218.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|443408081|gb|ELS66609.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21236]
Length = 889
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666147|ref|YP_002425372.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 845
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/868 (42%), Positives = 534/868 (61%), Gaps = 64/868 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAMHE+ KP+KK AR
Sbjct: 9 IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD++VRMAQDFS+RYPLI G GNFGS+D D AAMRYTE R+
Sbjct: 69 VVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMS 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ M LAD++++TV+F PN+DE + EP ++PAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIAHEM-LADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++ AL+ +PE ++L +P PDFPT G I G G ++AYRTGRGR+ +R + E
Sbjct: 188 TEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVMRARCE 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E D KS R +I+ E+PYQ NK+ L+E+IAE+V+ K L+GISD+RDESD+SGMRI IE
Sbjct: 248 FE-TDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMRIAIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A+ +V+N+LY+ T +QS F+ NMV +LDG P+ +GL+++LQAF+ R VV RR
Sbjct: 307 LKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS-------------AAL--- 488
F+L + ++R HI+EG+ V L NLD +I ++R A S + A AAL
Sbjct: 367 VFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAALLVE 426
Query: 489 ---------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
D + LSE QA AILD+ L RLT LE+ K DE L+++I +L E+L S+
Sbjct: 427 RGEPSEGMHADGYHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEILGSK 486
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
++++I +E++ +++++ R S + AD+G + D+I +EM++ + GY+K
Sbjct: 487 TRLMEVIREELVAIRDQYGDARRSEIV-ADTGDISTEDLITEEEMVVTFTHAGYIKAQPV 545
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
FN Q RG GK + D + H + L+FS+ G V+ + Y++P+ R A
Sbjct: 546 TVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQAGRGA 605
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G P+V +LSL+ ERIT+++PV +F QF+ M+T G +KK + +S R+ GI AI
Sbjct: 606 KGKPIVNMLSLAPTERITAVLPVRDFTEGQFVCMVTSLGVVKKTPVMEYSRPRSQGINAI 665
Query: 720 QLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMAS 779
L PGD L V + +++GM + +R++ RN RG + L++ D++ S
Sbjct: 666 NLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAMGRNARGVRGISLEENDRVIS 725
Query: 780 MDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG 839
+ S +L + +G+GK + +R+ G+I
Sbjct: 726 AQWV---------------------DSSQVILTTTANGYGKLTKVDEYRRTNRGGKGVIA 764
Query: 840 YKFSAE--DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
+ + D + A+ V E DE ++LVS GT+ RI V I R A+GV L
Sbjct: 765 IQTNERNGDVVGALAVT--------ERDE-LMLVSDHGTLIRIAVNSIRRTGRNAQGVRL 815
Query: 898 MRLELSGKIQSASLISVTEPE----TDL 921
+ L ++ +LI+ T+ E TDL
Sbjct: 816 INLGEGEQLAGLALIADTDEEEGEQTDL 843
>gi|420497682|ref|ZP_14996242.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25]
gi|420528062|ref|ZP_15026454.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25c]
gi|420529931|ref|ZP_15028316.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25d]
gi|393113961|gb|EJC14479.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25]
gi|393133957|gb|EJC34372.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25c]
gi|393136260|gb|EJC36651.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-25d]
Length = 826
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/821 (43%), Positives = 536/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+ I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLALIDDLNGILKSEDRLNEVVKTELLEIKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRHTEIQESYE-SIDTEDLIANEPMVVSVSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|418314857|ref|ZP_12926323.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21340]
gi|365244460|gb|EHM85119.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21340]
Length = 887
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMDSLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|416892456|ref|ZP_11923794.1| DNA gyrase A [Aggregatibacter aphrophilus ATCC 33389]
gi|347814735|gb|EGY31383.1| DNA gyrase A [Aggregatibacter aphrophilus ATCC 33389]
Length = 885
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/859 (42%), Positives = 539/859 (62%), Gaps = 56/859 (6%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHE G + KP++K A
Sbjct: 8 ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+AVYD+LVRMAQ FSLRY L+ G GNFGS+D D AAMRYTE R+
Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ LLAD+D++TVNFVPN+D S++ P +LP ++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 TKIAHE-LLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A I N + T+ EL+ ++PGPDFPT LI G GI +AY+TGRG+I VR K
Sbjct: 187 LGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E D K R +I+ EIPYQ NK+ L+EKIAE V+ K ++GIS +RDESD+ GMRIVI
Sbjct: 247 EIE-TDEKG-RETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A +V+N+LY LT +Q +F N+V + GQPK + LK++++AF+ R VV RR
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
F+L + +ER HI+EG+ + L N+D +I ++R+AP+ TA L
Sbjct: 365 TIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLA 424
Query: 489 -----------KDE--------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQI 529
DE + L+E QA AILD+ L++LT L + +DE K L+E I
Sbjct: 425 TAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484
Query: 530 LKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAIS 589
+L +L S + ++++I +E+ +++ +F+ PR + + A SG ++ D+I +++++ +S
Sbjct: 485 GELLRILRSPERLMEVIREELEQIREQFNDPRRTEIT-AASGDINLEDLIAQEDVVVTLS 543
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
+GYVK + Q RG GKS K++ D + +V HD +L FS RG +Y +
Sbjct: 544 HEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKV 603
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P+ +R + G P+V IL L + ERIT+I+PV+ + D+F++M T G +KK++L FS
Sbjct: 604 YQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEEDKFVIMATAGGVVKKIALTEFS 663
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAM 769
R++GIIA+ L DEL V + + + S G V+ S +R++ R G +
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAMGRLATGVRGI 723
Query: 770 RL-------KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRV 822
+L D + D+ + L+ + S V + +L +++G+GKR
Sbjct: 724 KLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVVPKNNGEILTATQNGYGKRT 783
Query: 823 PLSSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880
L + N G+I K S + +AA V+ +Q++L++ +GT+ R
Sbjct: 784 KLEEYPTKSRNTKGVISIKVSERNGKVVAATQVI---------DTDQIMLITDAGTLVRT 834
Query: 881 KVRDISIQARYARGVILMR 899
+V ++SI R +GV L+R
Sbjct: 835 RVSEVSIVGRNTQGVRLIR 853
>gi|420445328|ref|ZP_14944242.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-42]
gi|393063522|gb|EJB64369.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-42]
Length = 826
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/821 (43%), Positives = 536/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T G +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKKGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVI-------------- 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG + + + +VG
Sbjct: 708 ------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|386348018|ref|YP_006046267.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
gi|339412985|gb|AEJ62550.1| DNA gyrase, A subunit [Spirochaeta thermophila DSM 6578]
Length = 809
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/820 (43%), Positives = 528/820 (64%), Gaps = 33/820 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VPV + EE+ SY+ Y+MSV++ RALPDVRDGLKPV RRIL+AM+E+GL +PFKK
Sbjct: 7 KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
R+VG+VLGK+HPHGD ++YD+LVR+AQ+FS+RYP++ G GNFGSID DP AAMRYTE +
Sbjct: 67 GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L ++E ML DI+++TV+FVPN+DES KEP++LPA +P LL+NGASGIAVGMATNIPPH
Sbjct: 127 LHKIAEEML-RDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+ + A+I NPE ++LL Y+ GPDFPTGG+I G GI AY TG+G + VR +
Sbjct: 186 NLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRAR 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E L +S R +++ EIPY NKS L+E++A LV +K ++GIS+IRDESDR+G+RIV
Sbjct: 246 LSLETL--RSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
ELKRG P +V+N L+ +T LQ++F N + ++ G+P+ + LKE++Q F+ R VV R
Sbjct: 304 FELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
RA++ L + +ER HI+EG+ + LDN+D VI I++++ + +A L F LSE+QA AI
Sbjct: 364 RAQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L++LT LE +K ++E + ++ I +L+ELL S + IL++++ E +EL + R
Sbjct: 424 LDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDERR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ LD D+I ++M++ +S G +KRM + + Q RG G GKL +D
Sbjct: 484 TEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGKLSGDDV 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+S V HD++L+ S+ G Y + ++IPE +R + G + ++ LS E++++++ V
Sbjct: 544 VSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSV 603
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F ++ + M+T G K++ + S+ RT G+IAI L GD L V +
Sbjct: 604 ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLTEGKGEVMIV 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + RS+ R RG A++L+ GD++ +P KD
Sbjct: 664 TRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEVCGA--VPVEEGKD------------ 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
LL V+ G+GKRV S F G I YK SA LAAV V
Sbjct: 710 -------LLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSARTGELAAVLSV------- 755
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
E+ + V++V+ G + ++ V+DIS+ R A GV ++ LE
Sbjct: 756 -EAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLE 794
>gi|385220476|ref|YP_005781948.1| DNA gyrase subunit A [Helicobacter pylori India7]
gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
Length = 826
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 535/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
Length = 860
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/840 (42%), Positives = 527/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ+FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + +++ A +L+ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFEESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|418322390|ref|ZP_12933723.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus VCU006]
gi|418874097|ref|ZP_13428369.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC93]
gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
gi|365223419|gb|EHM64708.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus VCU006]
gi|377773605|gb|EHT97350.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC93]
Length = 889
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHE 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
Length = 850
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/855 (41%), Positives = 546/855 (63%), Gaps = 41/855 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ R+ V+L ++M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ MHELG++ KP+
Sbjct: 11 IAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVTPDKPY 70
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+VLGK+HPHGD AVY+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYT
Sbjct: 71 KKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 130
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E RL ++ ML DI++DT++F PN+D +++EPS+LP+R P LL+NGASGIAVGMATNI
Sbjct: 131 EARLSKIAMEML-RDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNI 189
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNL E++ + L+ NP+AT +L+E +PGPDFPTGG++MG GI AY TG+G I V
Sbjct: 190 PPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKGTIIV 249
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E +R +I E+PY NK+ L+E+IAEL +K ++GI+DI DESDR GM
Sbjct: 250 RAKVEIEGEAGGKQR--IIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGM 307
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VI+++R A +++N+LY+LT +Q+SFS NM+ I+ G PK + LKE+L +L+ + V
Sbjct: 308 RVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLEHQVEV 367
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
++RR +++L++ + R HI+EG+ + LD++D +I+I+R + + A L + F L +KQA
Sbjct: 368 IQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIEGFGLDDKQA 427
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RLT LER+K E LM+ I + + +L+SR+ + ++I QE++E++N+F
Sbjct: 428 QAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRERVNEIIYQELLEIQNKFGD 487
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
PR + L + L+D D+I ++++++++ GY+KR+ + F QNRG G +
Sbjct: 488 PRRTELLVGEVLSLEDEDLIEEEDVIISLTHNGYIKRLPTSEFKAQNRGGRGVQGMGVHN 547
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + + HD +L+F+D G VY + Y+IPE R+A G P++ +L++ + E+I ++
Sbjct: 548 DDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPVINLLNIGNNEKIQAV 607
Query: 680 IPVSEFAGD--QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
I VS+ D + L +T+ G +K+ ++ F++IR+ G+ AI L D++ V + D
Sbjct: 608 INVSDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLKAINLKDDDQVSNVLIASEDQ 667
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + + G + + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 668 NIIIGTHRGYAVSFNAADVRSMGRSATGVRGVRLRENDYVVGSDI----LKPDSE----- 718
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFV 853
+ +SE+G+GKR P + + P+ G G K + LA +
Sbjct: 719 ------------VFIISENGYGKRTPAAEY---PIKGRGGKGIKTANITEKNGPLAGLTT 763
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
V +GE D ++L++ G + R V D+S R GV L+R+ K+ + + +
Sbjct: 764 V------NGEED--IMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVE 815
Query: 914 VTEPETDLFLPSTSD 928
+ D +SD
Sbjct: 816 KQDDSEDDTKDQSSD 830
>gi|420464154|ref|ZP_14962929.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-4]
gi|393078596|gb|EJB79336.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-4]
Length = 828
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIVNEPMVVSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVGVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + +VL + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMVLTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|116493580|ref|YP_805314.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
Length = 873
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/843 (41%), Positives = 534/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
gi|417653839|ref|ZP_12303567.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
gi|417796864|ref|ZP_12444066.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21305]
gi|417799310|ref|ZP_12446454.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21310]
gi|417899815|ref|ZP_12543715.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21259]
gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
gi|334267902|gb|EGL86353.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21305]
gi|334274212|gb|EGL92539.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21310]
gi|341843878|gb|EGS85098.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21259]
Length = 889
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|395767183|ref|ZP_10447718.1| DNA gyrase, A subunit [Bartonella doshiae NCTC 12862]
gi|395414496|gb|EJF80938.1| DNA gyrase, A subunit [Bartonella doshiae NCTC 12862]
Length = 925
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/900 (41%), Positives = 536/900 (59%), Gaps = 73/900 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LLADID+DTV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKVSEE-LLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP TL E++E +PGPDFPTGG+I+G+ GI AY TGRG + +R K
Sbjct: 195 LGEVIDGCIALIDNPSITLDEIIEIIPGPDFPTGGIILGHSGIRSAYETGRGSVIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EK+AELV +K ++GISD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ +V+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMALLDMLRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R+AP TA L
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEIIALIRKAPDPQTARTQLMERRWPAVDVAPLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I +L+
Sbjct: 433 LIDDPRHVIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLHILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F+TPR ++ S ++D+ D+I +++M++ +S GY+KR+
Sbjct: 493 SRSQIMNIVKDELSSLREEFATPRRTVF-GFGSAEMDNEDLIASEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSSRGIVYKEKVWRLPLGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + + VM T G +++ L+ F +
Sbjct: 612 QSRGRALINMLPLQQGERITTIMPLPEDEASWSELDVMFATTRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + + NG I D+ RN+ G + L
Sbjct: 672 GKIAMKLDEEGDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGVRGINLA 731
Query: 773 DGDKMASMDIIPAALHKDLERTP------------------------EDSHSNVKGSSGP 808
+GDK+ SM I+ +ER+ +D S + +
Sbjct: 732 NGDKVISMTILEHVEATSVERSAYIKRVVGERRAAGADAEDILTLDEDDGGSEAELTDER 791
Query: 809 W---------LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+ LL VSE G+GKR FR G G A D V + A
Sbjct: 792 YAELNAREQMLLTVSEFGYGKRSSSYEFRI-----SGRGGKGIRATDPSKTVEIGKLVAA 846
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+ +Q++LVS G + R+ V I I R +GV + K+ S IS +E +T
Sbjct: 847 FPVKMQDQIMLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTAEGEKVVSVERISESEEDT 906
>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus MN8]
gi|384866348|ref|YP_005746544.1| DNA topoisomerase subunit A [Staphylococcus aureus subsp. aureus
TCH60]
gi|415683079|ref|ZP_11448345.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
gi|417888896|ref|ZP_12532996.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21195]
gi|418565283|ref|ZP_13129693.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21264]
gi|418601082|ref|ZP_13164528.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21345]
gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus MN8]
gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus TCH60]
gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
gi|341853828|gb|EGS94707.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21195]
gi|371974438|gb|EHO91770.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21264]
gi|374400073|gb|EHQ71196.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21345]
Length = 886
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|429204610|ref|ZP_19195896.1| DNA gyrase subunit A [Lactobacillus saerimneri 30a]
gi|428147104|gb|EKW99334.1| DNA gyrase subunit A [Lactobacillus saerimneri 30a]
Length = 858
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/869 (41%), Positives = 541/869 (62%), Gaps = 51/869 (5%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V RI V+L M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ MHELG++ KP+
Sbjct: 4 VPKRIKDVDLSHVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMHELGVTPDKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GKFHPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYT
Sbjct: 64 KKSARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ ML DI++DT++F PN+D +++EP +LP+R P LL+NGA+GIAVGM TNI
Sbjct: 124 ESRMSKIALEML-RDINKDTIDFQPNYDGTEREPVVLPSRFPNLLVNGATGIAVGMTTNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNL E++ L L++NP+AT +L+E +PGPDFPTGG++MG GI AY TGRG +T+
Sbjct: 183 PPHNLAEVISGLHVLMNNPDATTADLMEAIPGPDFPTGGIVMGKSGIRKAYETGRGTVTL 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K ++E + K+ + +++ E+PY NK+ L+E+IAEL K ++GI+DIRDESDR GM
Sbjct: 243 RAKVDIE--EEKNGKQTIVVHELPYMVNKAKLIERIAELAREKKIEGITDIRDESDREGM 300
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RI+I+++R S+V+N+LY+LT +Q+ F+ NM+ I++G PK + LKE+LQ +L + V
Sbjct: 301 RIIIKVRRDYSASVVLNNLYKLTLMQTGFTFNMLAIVNGTPKILSLKEILQHYLKHQEEV 360
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
+ RR F L + K R HI+EG+ + LD++D +I I+R + S A L +E+ LS KQA
Sbjct: 361 IRRRTEFDLKKAKARAHILEGLRIALDHIDAIINIIRNSESGEIAKDRLMNEYSLSAKQA 420
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RLT LER K +E M+ I E++L+ I +I QE+++++ +F
Sbjct: 421 QAILDMRLVRLTGLERDKVENEYDKTMKAIADYEDILAHESRIHNIIYQELLQIQEKFGD 480
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
R + L + L+D D+I + +++ ++ GYVKRM + F QNRG G +
Sbjct: 481 ERRTELMVGEVTSLEDEDLIEEENVVITVTHNGYVKRMPTSEFKAQNRGGRGIQGMNVHD 540
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + I HD +L+F++ G VY + Y+IPE R A G P++ +L + E+I ++
Sbjct: 541 DDFIEHLITASTHDVLLFFTNVGKVYRMKGYEIPEYGRAAKGIPIINLLDIDSEEKIQAV 600
Query: 680 IPVS--EFAGDQ----FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC 733
I V+ + DQ +L T++G +K+ ++ F+++R G+ AI L GDEL V
Sbjct: 601 IKVTAEQHQQDQDAAHYLFFTTLHGRVKRTAVEEFANVRRNGLKAINLRDGDELIKVVIT 660
Query: 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLER 793
+ + + NG + + +RS+ R G + +RL+D D + I+
Sbjct: 661 DGKQNIIIGTHNGYAVSFAEADVRSMGRTASGVLGVRLRDDDYVIGSAIL---------- 710
Query: 794 TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVF 852
D SNV L VSE G+GK+ P S + + G++G K + D+ A
Sbjct: 711 ---DPKSNV--------LVVSEKGYGKQTPASEY---GIKNRGVMGVKTLNITDKNGA-- 754
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ G + + DE +++++ G + R KV D+S R GV LM+L+ ++ + + +
Sbjct: 755 LAGLTTV---KGDEDILVITTGGVMIRFKVADVSQTGRATLGVRLMKLDDDAQVSTMTKV 811
Query: 913 ---------SVTEPETDLFLPSTSDKLAT 932
V++PE P+TS + T
Sbjct: 812 EPEEDEELAEVSQPEA---TPATSHQTVT 837
>gi|1346238|sp|P20831.3|GYRA_STAAU RecName: Full=DNA gyrase subunit A
Length = 889
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|420460200|ref|ZP_14958999.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-27]
gi|393077302|gb|EJB78051.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-27]
Length = 827
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 538/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVSAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ + +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 NHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVIS------------ 709
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R G+IG K + + +VG
Sbjct: 710 --------DDGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|420408835|ref|ZP_14907990.1| DNA gyrase, A subunit [Helicobacter pylori NQ4216]
gi|393022997|gb|EJB24112.1| DNA gyrase, A subunit [Helicobacter pylori NQ4216]
Length = 826
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/821 (43%), Positives = 537/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S TA AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDGIVQLIKTSQSPETAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ + L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDECSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEEVREIGRTTRGVIGIRLNENDFVVGAVVI-------------- 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
S G LL VSE+G GK+ ++R+ G+IG + + + +VG
Sbjct: 708 ------SSDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
Length = 833
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/831 (43%), Positives = 540/831 (64%), Gaps = 33/831 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A L
Sbjct: 359 CLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYERQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELK 728
L+ E+I + + +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELV 657
Query: 729 WVRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
+ N + +AS GM I + +R + R+TRG + +RL + D + +I
Sbjct: 658 GAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVGAVVI---- 713
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR 847
G LL VSE+G GK+ ++R+ G+IG K + +
Sbjct: 714 ----------------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK-- 755
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 756 --TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETRRNASGVKLI 802
>gi|420418642|ref|ZP_14917734.1| DNA gyrase, A subunit [Helicobacter pylori NQ4076]
gi|393033468|gb|EJB34531.1| DNA gyrase, A subunit [Helicobacter pylori NQ4076]
Length = 831
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/830 (43%), Positives = 541/830 (65%), Gaps = 32/830 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQES-YENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L+ E+I + + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVS 657
Query: 730 VRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ N + +AS G+ I + +R + R TRG + +RL + D + +I +
Sbjct: 658 AKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDDN 717
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
K LL VSE+G GK+ ++R+ G+IG K + +
Sbjct: 718 K--------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK--- 754
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 755 -TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 801
>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
Length = 922
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/898 (41%), Positives = 537/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 132 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 191 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 251 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 309 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 369 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 428
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 429 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 488
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 489 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 547
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 548 PLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTP 607
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E F + ++ T G +++ L+ F +
Sbjct: 608 QSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRN 667
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G + L
Sbjct: 668 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLA 727
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D+ PA L+R+ ED
Sbjct: 728 EGDKVISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 787
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 788 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 845
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + K+ S IS
Sbjct: 846 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERIS 896
>gi|406596976|ref|YP_006748106.1| DNA gyrase subunit A [Alteromonas macleodii ATCC 27126]
gi|407687888|ref|YP_006803061.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406374297|gb|AFS37552.1| DNA gyrase subunit A [Alteromonas macleodii ATCC 27126]
gi|407291268|gb|AFT95580.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 904
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/873 (41%), Positives = 539/873 (61%), Gaps = 86/873 (9%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP+K
Sbjct: 5 AKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYTE
Sbjct: 65 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LLAD+D++TV+FVPN+D ++ P +LP ++P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMAKIAHE-LLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+++ ALI +P T+ +L+ ++PGPDFPT +I G GI DAYRTGRG+I +R
Sbjct: 184 PHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYLR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E DS K +++ EIPYQ NK+ L+EKIAELV+ K ++G+S +RDESD+ GMR
Sbjct: 244 AKAEIE-TDSNGKET-IVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMR 301
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR +++N LY T LQ+ F NMV + +GQPK LKE L+ F+ R VV
Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVV 361
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------------ 488
RR F+L + ++R HI+EG+ + L N+D +I +++ + S + A +L
Sbjct: 362 TRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQ 421
Query: 489 ----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLM 526
++ L+E+QA AILD+ L +LT LE +K ++E K L+
Sbjct: 422 MLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLL 481
Query: 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLL 586
E I +L +L+S + ++++I++E+ ++++ F R + + A S +D D+I +++++
Sbjct: 482 EIIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEIT-AASHDIDIEDLIEQEDVVV 540
Query: 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYS 646
+S +GYVK K + Q RG GKS K++ D + +V HDH+L FS RG +Y
Sbjct: 541 TLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYW 600
Query: 647 ARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706
+ Y++P +RNA G P+V IL L + ERIT+I+P+ EF +F++M T NG +KK L+
Sbjct: 601 LKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTVKKTDLS 660
Query: 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDI----------- 755
L+S R++GIIA+ L GDEL V DD + + S G V+ + +
Sbjct: 661 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRD 720
Query: 756 ---------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+R + R G +RL+DG K+ S+ I+P KG
Sbjct: 721 PETGEELLALRPMGRTATGVRGIRLQDGQKVVSL-IVP------------------KG-D 760
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
GP +L +E+G GKR PL + G++ K S + VVG A +
Sbjct: 761 GP-ILTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGK----VVG---AVQVDETN 812
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+++L+S GT+ R +V ++S+ R +GV L+R
Sbjct: 813 EIMLISDQGTLVRTRVGEVSVVGRNTQGVRLIR 845
>gi|418872287|ref|ZP_13426631.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-125]
gi|418947147|ref|ZP_13499535.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-157]
gi|375367341|gb|EHS71304.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-125]
gi|375376832|gb|EHS80346.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-157]
Length = 868
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
Length = 883
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/871 (41%), Positives = 531/871 (60%), Gaps = 68/871 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+P+ L EEM SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAMHEL + +KK AR
Sbjct: 9 LPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ LLADID++TV+F PN+D S+KEP +LPAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIGHE-LLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE+VD L+ P+ ++ L++ + PDFPT GLI G G+ + YRTGRGR+ +R +T
Sbjct: 188 GEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVIMRARTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E + K+ R +I+ E+PYQ NK L E++AELV K ++GIS+IRDESD+SGMR+VIE
Sbjct: 248 FEPI-GKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGMRLVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N L++ T LQ SF NMV ++DG+P+ + LK++L FL+ R VV RR
Sbjct: 307 LKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA------------------SA 486
F+L + ++R HI+EG+ V L N+D +I +++ AP+ + A S
Sbjct: 367 IFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVEEMLSR 426
Query: 487 ALKDE----------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
AL D ++LSE QA AIL++ L+RLT LE+ K V E + +M+ I
Sbjct: 427 ALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREVMDVIT 486
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L ++L+ + I +I +E+ ++N+F PR S L ++ +++ D+I ++M++ +S
Sbjct: 487 DLLDILARPERITAIIVEELGAIRNQFGDPRRSELV-MNTAEINIEDLITPEDMVVTLSH 545
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY KR + Q RG GK ++ D + V HD VL FS+RG Y + Y
Sbjct: 546 TGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYWLKVY 605
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
++PE TRN+ G P+V + L +GE+IT+++P+ EF + F+ M T G +KK +L FS+
Sbjct: 606 EVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATSEGTVKKTALTAFSN 665
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIA+ L GD L V V + S G + + +R + R+ RG M
Sbjct: 666 PRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPMGRDARGVRGMT 725
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L+DG + +M + ++S S +L +E+G+GKR P++ + +
Sbjct: 726 LEDGQAVIAMLV-----------AKDESQS---------VLTATENGYGKRTPVAEYTRH 765
Query: 831 PLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQA 889
G+I + S + RL +V E ++V+L+S G + R V I
Sbjct: 766 GRGTKGMIAIQTSDRNGRLVGAVLV--------EPSDEVMLISTGGVLIRTSVESIREMG 817
Query: 890 RYARGVILMRLELSGKIQSASLISVTEPETD 920
R +GV L+ L+ + AS+ V E E+D
Sbjct: 818 RSTQGVTLINLDEGTFL--ASIEKVAESESD 846
>gi|418577924|ref|ZP_13142022.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1114]
gi|418902290|ref|ZP_13456334.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1770]
gi|418927295|ref|ZP_13481185.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1612]
gi|377699806|gb|EHT24152.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1114]
gi|377741005|gb|EHT65001.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1612]
gi|377745643|gb|EHT69619.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1770]
Length = 887
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
gi|374683173|gb|AEZ63372.1| GyrA [Yersinia ruckeri]
Length = 889
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/896 (40%), Positives = 553/896 (61%), Gaps = 74/896 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+++DTV+FVPN+D +++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I + + T++ L+E++PGPDFPTG +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 VRARAEVEA-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ +F NMV + GQPK + LK++L AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I ++R A + + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 ASMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ I +L +L + + ++++I +E++ +K +++ R + + A++ ++ D+I +++
Sbjct: 481 LLTLIGELIFILENPERLMEVIREELVAIKEQYNDARRTEIT-ANTSDINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S +G V+ +RS+ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L D++ S+ IIP +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLNGDDRVISL-IIP------------------RGDG--EILTVTENGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
+ G+I K S + + AV V +Q+++++ +GT+ R +V
Sbjct: 759 EEYPTKSRATQGVISIKVSERNGKVVGAVQVA---------PTDQIMMITDAGTLVRTRV 809
Query: 883 RDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSE 938
++S+ R +GV L+R + L V EPE D F ++L E G +E
Sbjct: 810 SEVSVVGRNTQGVTLIRTAEDEHV--VGLQRVAEPEDDEF---EGEELDAEEGSAE 860
>gi|374683171|gb|AEZ63371.1| GyrA [Yersinia ruckeri]
Length = 889
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/896 (40%), Positives = 552/896 (61%), Gaps = 74/896 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+++DTV+FVPN+D +++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I + + T++ L+E++PGPDFPTG +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 VRARAEVEA-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ +F NMV + GQPK + LK++L AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I ++R A + + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 ASMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ I +L +L + + ++++I +E++ +K +++ R + + A++ ++ D+I +++
Sbjct: 481 LLTLIGELIFILENPERLMEVIREELVAIKEQYNDARRTEIT-ANTSDINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S +G V+ +RS+ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L D++ S+ IIP +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLNGDDRVISL-IIP------------------RGDG--EILTVTENGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
+ G+I K S + + AV V +Q+++++ +GT+ R +V
Sbjct: 759 EEYPTKSRATQGVISIKVSERNGKVVGAVQVA---------PTDQIMMITDAGTLVRTRV 809
Query: 883 RDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSE 938
++S+ R +GV L+R + L V EPE D F ++L E G +E
Sbjct: 810 SEVSVVGRNTQGVTLIRTAEDEHV--VGLQRVAEPEDDEF---EGEELDAEEGSAE 860
>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 872
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/872 (41%), Positives = 525/872 (60%), Gaps = 69/872 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+LFAMHEL KP+KK AR
Sbjct: 9 LPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQ+FSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 IVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ LLADID++TV+F PN+D S++EP ++PAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIGHE-LLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE++D AL++N E T+ EL++ +PGPDFPT G+I G G+ + YRTGRGR+ +RG+T
Sbjct: 188 GEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVVMRGRTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E +D + R +II E+PYQ NK L+EKI ELV K ++GISD+RDESD+SGMR+VIE
Sbjct: 248 FEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIE 307
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG +V+N LY+ T LQ +F NMV ++DGQP+ + LK++L+ FL R V+ RR
Sbjct: 308 LKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRREVLTRRT 367
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------- 491
F+L + +ER HI EG+ V LDN+D +I +++ +P+ + A L
Sbjct: 368 VFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQR 427
Query: 492 ---------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+ LSE QA AIL++ L+RLT LER K V + L+ +I
Sbjct: 428 AALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIA 487
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLS--MLEDADSGQLDDIDIIPNDEMLLAI 588
L ++L+ + I ++I +E+ ++ +F R S ++ D G ++D I P D M++ +
Sbjct: 488 DLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLG-IEDF-ITPVD-MVVTL 544
Query: 589 SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSAR 648
S GY+K + Q RG GK ++ +D + V HD +L F++RG VY +
Sbjct: 545 SHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVYWLK 604
Query: 649 AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708
Y++P+ TR + G P+V + +GE+I++I+PV EF D+++ M T G +KK L+ F
Sbjct: 605 VYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFTDDRYIFMCTAQGTVKKTPLSDF 664
Query: 709 SSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA 768
S+ R GIIA+ L D L V + S G + + +R + R RG
Sbjct: 665 SNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRG 724
Query: 769 MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFR 828
MRL D ++ S+ + D + +L +E+G GKR L+ FR
Sbjct: 725 MRLADQQQVLSLLV-----------ADNDQQT---------VLVATENGFGKRTVLADFR 764
Query: 829 KLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ 888
G+I S + VV L D +++++L++ G + R +VR+I
Sbjct: 765 HSGRGTQGVIAIAGSERNGR----VVAARLVRD---EDEIMLITTGGVLIRTRVREIREL 817
Query: 889 ARYARGVILMRLELSGKIQSASLISVTEPETD 920
R +GV L+ L+ K+ A L + E E D
Sbjct: 818 GRATQGVTLIALDAGEKL--AGLEKIVETEDD 847
>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
ATCC 11563]
gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
ATCC 11563]
Length = 859
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/816 (41%), Positives = 523/816 (64%), Gaps = 34/816 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E+ +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++S KP+KK AR+VG
Sbjct: 13 EISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPYKKSARIVG 72
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R+ ++
Sbjct: 73 DVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARMSKIA 132
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
M+ D+++DTV+F+PN+D ++EP +LPAR P LL+NG +GIAVGM TNIP HNL E+
Sbjct: 133 HEMV-RDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIPTHNLSEV 191
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+ + L+ N +AT EL+E +PGPDFPTGG+++G GI AY TG+G I VR K ++E
Sbjct: 192 IGAIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTIIVRAKLDIET 251
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
L S +R +I+ EIPY NK+ LVE+IAEL +K ++GI+ +RDES R GMR+VIE ++
Sbjct: 252 LSSGKER--IIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRVVIECRK 309
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
A S++VN+LY+ T LQ++F NMV I++G P+ + LKE+LQ +L + V+ RR+ F+
Sbjct: 310 DASASVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVIRRRSIFE 369
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
++ + R HI+EG+ + LD++D ++ I+R + S A A +++KLS+KQ+ AILDM L
Sbjct: 370 KNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIEDYKLSDKQSQAILDMRL 429
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RLT LER+K E LM QI L ++L S Q+I E+IE++++F R + L
Sbjct: 430 VRLTGLEREKIDKEHAELMAQIDYLNQVLGSETMRYQIIYDELIEIESKFGDDRRTELMV 489
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
+ +DD D+I +++ +++ GY+KR+ F QNRG G + +D + +
Sbjct: 490 GEIHNIDDEDLIEESNVIVTLTQNGYIKRIDDVEFRAQNRGGTGVKGMSMNDDDFVETML 549
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII---PVSE 684
HD VL+F++ G V+ ++ Y+IPE R A G P+V +L+L E + ++I P+ +
Sbjct: 550 STSTHDSVLFFTNTGRVFHSKGYEIPEFGRAAKGIPVVNLLNLQQDETVQAMINVTPIED 609
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
+ L+ +T NG +K+ + + + +IR G+IA++L GDEL V + DD + +AS+
Sbjct: 610 AEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKVVLTSGDDNIIIASR 669
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
+G + +RS+ R G +RL DGD++ M ++ P+D+
Sbjct: 670 DGYAVSFQETNVRSMGRTATGVRGIRLNDGDQVVGMSVLG----------PDDN------ 713
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
+L V+E G+GK+ P S + G+ + ++ + +VG + GE
Sbjct: 714 -----VLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGI----LVGLTTVS-GEE 763
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D ++L++ G R ++IS R +GV L+RL
Sbjct: 764 D--IMLMTNQGIAIRFHAKNISQTGRATQGVRLIRL 797
>gi|347547516|ref|YP_004853844.1| putative DNA gyrase subunit A [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346980587|emb|CBW84488.1| Putative DNA gyrase subunit A [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 841
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 546/835 (65%), Gaps = 33/835 (3%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN RI + L++EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S K
Sbjct: 5 PN--QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
+KK AR+VGEV+GK+HPHGD AVY ++VRMAQDFS R L+ GHGNFGS+D D AAAMR
Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE R+ +S LL DI++DT+++ N+D S++EP +LPAR P LL+NG+SGIAVGMAT
Sbjct: 123 YTEARMSKIS-MELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NIP H+LGE++D + AL ++P+ +++EL+EY+PGPDFPT G+IMG GI AY +GRG I
Sbjct: 182 NIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSI 241
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
TVRG+ ++E + K+ + ++I EIPYQ NK+ LVE+IAEL K +DGI+ + DESDRS
Sbjct: 242 TVRGRVDIE--EKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 299
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRIVIE++R S++VN+L+++TALQ++F NM+ ++D PK + LKE+L +L+ +
Sbjct: 300 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQK 359
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR F+L + + R HI+EG+ + LDN+D +I+++R + ++ A L +F LS+K
Sbjct: 360 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDK 419
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM L+RLT LER+K +E + L+ I L+ +L+ + IL++I +E+ E+K ++
Sbjct: 420 QAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKY 479
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
+ R + + D L+D D+IP +E+ + ++++GY+KR+ +T+ Q RG G
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+D + + HD +L+F++ G VY ++ Y++PE R A G P++ +L + E++
Sbjct: 540 HEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVN 599
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++I +SEF D +L T +G +K+ +L+ F+ IR +G+ A++L DEL V+
Sbjct: 600 AVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGTK 659
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I + IR + R G +RL++ D++ M+++ ED
Sbjct: 660 NMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVL------------ED 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L V+E G+GK+ P S + PL G +G K V +
Sbjct: 708 DEK---------VLVVTEKGYGKQTPASQY---PLRNRGGMGVKTVTITEKNGNLVAMKT 755
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ GE D ++L++ SG + R ++ +S R A GV L+RL+ K+ + + +
Sbjct: 756 VT--GEED--LMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806
>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
JV22]
gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
JV22]
Length = 860
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/840 (42%), Positives = 527/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ+FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + +++ A +L+ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
Length = 822
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/841 (42%), Positives = 537/841 (63%), Gaps = 33/841 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITTEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + SK K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-SKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ SF M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILGSEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S +R + R G ++L GD + ++ ++S + V
Sbjct: 667 TKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVL----------NTDESEAQV 716
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+SE G GKR ++ L + G G K F ++ V V E
Sbjct: 717 --------FTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I E E +
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEE 820
Query: 921 L 921
+
Sbjct: 821 V 821
>gi|406025871|ref|YP_006724703.1| DNA gyrase subunit A [Lactobacillus buchneri CD034]
gi|405124360|gb|AFR99120.1| DNA gyrase subunit A [Lactobacillus buchneri CD034]
Length = 850
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/855 (41%), Positives = 546/855 (63%), Gaps = 41/855 (4%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ R+ V+L ++M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ MHELG++ KP+
Sbjct: 11 IAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVTPDKPY 70
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+VLGK+HPHGD AVY+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYT
Sbjct: 71 KKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 130
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E RL ++ ML DI++DT++F PN+D +++EPS+LP+R P LL+NGASGIAVGMATNI
Sbjct: 131 EARLSKIAMEML-RDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNI 189
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNL E++ + L+ NP+AT +L+E +PGPDFPTGG++MG GI AY TG+G I V
Sbjct: 190 PPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKGTIIV 249
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K E+E +R +I E+PY NK+ L+E+IAEL +K ++GI+DI DESDR GM
Sbjct: 250 RAKVEIEGEAGGKQR--IIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGM 307
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VI+++R A +++N+LY+LT +Q+SFS NM+ I+ G PK + LKE+L +L+ + V
Sbjct: 308 RVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLEHQVEV 367
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQA 499
++RR +++L++ + R HI+EG+ + LD++D +I+I+R + + A L + F L +KQA
Sbjct: 368 IQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIEGFGLDDKQA 427
Query: 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559
AILDM L RLT LER+K E LM+ I + + +L+SR+ + ++I QE++E++N+F
Sbjct: 428 QAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRERVNEIIYQELLEIQNKFGD 487
Query: 560 PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV 619
PR + L + L+D D+I ++++++++ GY+KR+ + F QNRG G +
Sbjct: 488 PRRTELLVGEVLSLEDEDLIEEEDVIISLTHNGYIKRLPTSEFKAQNRGGRGVQGMGVHN 547
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
+D + + HD +L+F+D G VY + Y+IPE R+A G P++ +L++ + E+I ++
Sbjct: 548 DDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPVINLLNIGNNEKIQAV 607
Query: 680 IPVSEFAGD--QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
I VS+ D + L +T+ G +K+ ++ F++IR+ G+ AI L D++ V + D
Sbjct: 608 INVSDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLKAINLKDDDQVSNVLIASEDQ 667
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + + G + + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 668 NIIIGTHRGYAVSFNAADVRSMGRSATGVRGVRLRENDYVVGSDI----LKPDSE----- 718
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFV 853
+ +SE+G+GKR P + + P+ G G K + LA +
Sbjct: 719 ------------VFIISENGYGKRTPAAEY---PIKGRGGKGIKTANITEKNGPLAGLTT 763
Query: 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
V +GE D ++L++ G + R V D+S R GV L+R+ K+ + + +
Sbjct: 764 V------NGEED--IMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVE 815
Query: 914 VTEPETDLFLPSTSD 928
+ D +SD
Sbjct: 816 KQDDSEDDTKDQSSD 830
>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
gi|410023932|ref|YP_006893185.1| DNA gyrase subunit A [Helicobacter pylori Rif1]
gi|410501700|ref|YP_006936227.1| DNA gyrase subunit A [Helicobacter pylori Rif2]
gi|410682219|ref|YP_006934621.1| DNA gyrase subunit A [Helicobacter pylori 26695]
gi|2507466|sp|P48370.2|GYRA_HELPY RecName: Full=DNA gyrase subunit A
gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
gi|409893860|gb|AFV41918.1| DNA gyrase subunit A [Helicobacter pylori 26695]
gi|409895589|gb|AFV43511.1| DNA gyrase subunit A [Helicobacter pylori Rif1]
gi|409897251|gb|AFV45105.1| DNA gyrase subunit A [Helicobacter pylori Rif2]
Length = 827
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 534/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|420412275|ref|ZP_14911404.1| DNA gyrase, A subunit [Helicobacter pylori NQ4228]
gi|393027933|gb|EJB29021.1| DNA gyrase, A subunit [Helicobacter pylori NQ4228]
Length = 828
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/822 (43%), Positives = 539/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R+ RG ++L + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREMGRHARGVRGIKLNENDFVVGAVVISG----------- 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 ---------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|379019819|ref|YP_005296481.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus M013]
gi|359829128|gb|AEV77106.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus M013]
Length = 886
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/841 (41%), Positives = 540/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ + L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIPLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 D 920
D
Sbjct: 815 D 815
>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
16841]
gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
16841]
Length = 871
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/844 (41%), Positives = 528/844 (62%), Gaps = 43/844 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I V+L + M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL KP +KC
Sbjct: 8 QIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKC 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GK+HPHGD+++Y +LV MAQD+S RYPL+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S ML ADI++DTV+FVPNFDE++KEP++LP+R P LL+NG +GIAVGMATNIPPH
Sbjct: 128 LSKISMEML-ADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRI 317
NL E++ + +I N ++ELL + GPDFPTG +I+G GI +AYRTGRG+I
Sbjct: 187 NLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRTGRGKI 246
Query: 318 TVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS 377
VR T +E + + R +++ E+PY NK+ L+EKIAELV +K +DGI+D+RDESDR
Sbjct: 247 RVRAITNIEPMQNGKNR--IVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQ 304
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
GMRI IEL+R +P++V+N LY+ T +Q +F M+ ++D QPK + L+E+L +LD +
Sbjct: 305 GMRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLDHQK 364
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
VV RR ++ L++ +ER HI+EG+++ LDN+D VI I+R + + A L + F L++
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIERFSLTDV 424
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AI+DM LR LT LER+K E LM++I +L+ +L+ K +L +I +E++ + ++
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAILADEKKLLGVIREEILLIAEKY 484
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
R + + D + D+IP ++A+++ GY+KRM + F QNRG GK + +
Sbjct: 485 GDERRTSI-GFDEYDISMEDLIPVTNTVIAMTKLGYIKRMSLDNFRAQNRG--GKGIKGM 541
Query: 618 RV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
D + + ++ +H ++++F++ G VY +AY+IPE R A GT ++ +L L GE+
Sbjct: 542 ETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQLQPGEK 601
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
IT++IP+ E+ +L M T NG +KK + ++++R TG+ AI L DEL V+ N
Sbjct: 602 ITAVIPIKEYTEGHYLFMATKNGIVKKTPITDYANVRKTGLAAITLREDDELIEVKKTDN 661
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + + ++ G I + +RS R + G + M L DGDK+ M +
Sbjct: 662 EQDIFLVTKYGQCIRFNERDVRSTGRTSMGVIGMNLTDGDKVVGMQM------------- 708
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
S G L+ VSE G GK S F G+ YK + + +VG
Sbjct: 709 --------ESQGDALMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITEK----TGNIVG 756
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
D++++L++ G + RIKV D ++ R GV LM L+ + AS+ V
Sbjct: 757 VKAV---NQDDEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMN--LADDVTVASIAKVR 811
Query: 916 EPET 919
E ++
Sbjct: 812 EDKS 815
>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
LMS2-1]
gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
gi|385833945|ref|YP_005871719.1| DNA gyrase subunit A [Lactobacillus rhamnosus ATCC 8530]
gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
LMS2-1]
gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
gi|355393436|gb|AER62866.1| DNA gyrase, A subunit [Lactobacillus rhamnosus ATCC 8530]
Length = 870
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 527/835 (63%), Gaps = 40/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPEKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ +P+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + K R HI+EG+ + LD++D +I I+R + + A L D+F LS+KQ+ AI
Sbjct: 365 RTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DG D +++++ SG + R ++++S R GV L+R++ K+ + + +
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807
>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
Length = 860
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/840 (42%), Positives = 528/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V+L + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L L+S+ +KK A
Sbjct: 10 IINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ FS+R PL+ G GNFGS+D D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEP++LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL+D + LI NP + +L+E++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E SK+K+ V+I E+PYQ NK+ L+E IA L ++K ++GI+++RDESDR G+R+VI
Sbjct: 249 HIE---SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L E+L FL R +V+ RR
Sbjct: 306 ELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + LDN+D V++I+R + +++ A L F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSRFGLSSIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E LM I +LE +L S + + ++I++E+ E+K +FSTPR +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYAELMLLIAELEAILRSEEKLNEIIKEELNEIKEKFSTPRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ ++ Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I +IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDTDEIVTAKIADVQTQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDIVVDADVID----------------- 707
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+ +L VSE G GKR + +R G+I K S + +VG L +D
Sbjct: 708 ---NEEQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSPK----TGNIVGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ V I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|420480734|ref|ZP_14979377.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-1]
gi|393096750|gb|EJB97347.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-1]
Length = 828
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/822 (43%), Positives = 541/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
Length = 922
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/817 (43%), Positives = 512/817 (62%), Gaps = 40/817 (4%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
E EM S+I YSMSV+ RALPDVRDGLKPVHRRIL+AM+E G+ +P KK A VG
Sbjct: 81 EFGTEMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVG 140
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
EV+GK+HPHGD AVYD++VR+AQ FS+R PLI GHGNFG+ID D AAAMRYTE RL A
Sbjct: 141 EVIGKYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRL-ARP 199
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LL D+ +DTV++ PN+DES EP +LPAR P LL+NG+SGIAVGMATNIPPHNL E
Sbjct: 200 AMELLRDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEA 259
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
V+ CALI +PE T EL++ +PGPDFPTG +IMG GI AY TGRG ITVR K +E
Sbjct: 260 VEAACALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIE- 318
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
+K+ R ++ EIPYQ NK L EKIA+LV K L+GISD+RDES G+R+VIELK+
Sbjct: 319 -STKTGRNRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKK 377
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFK 447
G P +V+N+LY+ T+LQS+F N + +++G P+ + L+++L ++ + VV RR RF
Sbjct: 378 GVIPQVVLNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFD 437
Query: 448 LSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNL 507
L + + R HI+EG ++ LD++D VI I+R + +++ ASA L + F +++Q AIL+M L
Sbjct: 438 LKKARARAHILEGYLIALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKL 497
Query: 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLED 567
RRLT LER K E L + I E+LL+ ++ +L +I++E+ E+ +F PR + + +
Sbjct: 498 RRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDPRRTEIRE 557
Query: 568 ADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 627
A+ +LD D+I +++M++ I+ GYVKR+ T+ Q RG G S L+ +D +++
Sbjct: 558 AEK-ELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAEMF 616
Query: 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG 687
+ H+ VL+FS RG VY + +++P +R A G +V +L +GE+I S+I +F
Sbjct: 617 IASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASVISTRDFPD 676
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 747
D+FL+ T +G +KK ++ + R GIIAI L D L VR D + MA+ G
Sbjct: 677 DEFLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDALLDVRRVRPQDKIIMATTEGK 736
Query: 748 VILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807
I+ + +R+ R+T G + L+ ++ M+I +N +G
Sbjct: 737 AIMFEQEQVRATGRDTSGVRGIDLRGSARVLGMEI-----------------TNGQGD-- 777
Query: 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIG-YKFSAEDR---LAAVFVVGFSLAEDGE 863
L ++E+G+GKR P+ R P G G Y R LAA+ VG
Sbjct: 778 --LFVITENGYGKRTPV---RDYPTQHRGGQGVYTIQMTQRKGMLAAMKTVG-------- 824
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
++ ++++ TV R+K +IS R +GV +M +
Sbjct: 825 PQHELFIITKGATVIRVKTGEISQTGRATQGVKMMNV 861
>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
Length = 925
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/896 (42%), Positives = 539/896 (60%), Gaps = 69/896 (7%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++M+E G KP++K A
Sbjct: 17 IKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNENGYEWNKPYRKSA 76
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+A+YD+LVRMAQ+FSLR PLI G GNFGSID D AAAMRYTECRL
Sbjct: 77 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSIDGDRAAAMRYTECRL 136
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++ LL DID+DTV+F N+D S+ EP +LPA+ P LL+NGA GIAVGMATNIPPHN
Sbjct: 137 EKVAHK-LLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A++ NP T+ EL++ +PGPDFPTGG+I+G GI AY +GRG + +R K
Sbjct: 196 LGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRSAYESGRGSVVMRSKV 255
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+VE + + R +I+ EIPYQ NKS ++EKIAE V +K ++GISDIRDESDRSGMR+VI
Sbjct: 256 DVEEI--RKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDIRDESDRSGMRVVI 313
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +V+N LYR + LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV+RR
Sbjct: 314 ELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILKAFISFREEVVQRR 373
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
+F L + ++R HI+ G+ + + N+D VI ++R AP +TA A L +
Sbjct: 374 TKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLMERDWPARDVEPLIR 433
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+KLSE+QA AILD+ L+RLT L R + DE + +I ++L
Sbjct: 434 LIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSKIGAEISDFLDILR 493
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I ++ E++E+K F+TPR + + D DD D+I ++M++ +S GY+KR+
Sbjct: 494 SRARIQDIVRGEMLEIKEEFATPRKTEIVDG-GADFDDEDLIQREDMVVTVSHNGYIKRV 552
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGI Y + +++P
Sbjct: 553 PLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGP 612
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GE+I+SI+P+ E + VM T+ G +++ L+ F+ I
Sbjct: 613 ISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRRNKLSDFTQINRN 672
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLKD 773
G IA++L GD + V C+ D V + + G I +R + RN+ G +RL D
Sbjct: 673 GKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGRNSVGVRGIRLAD 732
Query: 774 GDKMASMDIIPAALHKDLERTP-------------EDSHSNVKGSSGPWL---------- 810
GDK+ SM I+ + ERT E++ S+ G+ L
Sbjct: 733 GDKVISMQILHHMDAEAEERTAFLKMSRALRGEADENAGSDETGAVDAGLSQERYAEMSA 792
Query: 811 -----LFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
L +SE+G+GKR SSF R G + +R V F + E
Sbjct: 793 AEQIILTLSENGYGKRT--SSFEYRVTGRGGKGITAMAVTERNGG-LVSSFPV----EES 845
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+Q++LV+ G + R V I I R +GVI+ + + + IS + E D+
Sbjct: 846 DQIMLVTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGISEVDDEEDV 901
>gi|384887646|ref|YP_005762157.1| DNA gyrase subunit A [Helicobacter pylori 52]
gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
Length = 827
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/821 (43%), Positives = 536/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE ++ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEAKMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|158520690|ref|YP_001528560.1| DNA gyrase subunit A [Desulfococcus oleovorans Hxd3]
gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
Length = 830
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/834 (41%), Positives = 534/834 (64%), Gaps = 45/834 (5%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAMHEL KP+KK ARVV
Sbjct: 11 ISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSARVV 70
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD++VRMAQDFS+RY L+ G GNFGS+D D AAMRYTE R++ L
Sbjct: 71 GDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQKL 130
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ++L DID++TV+ N+DES EP +LP+RLPTLL+NG+SGIAVGMATNIPPHNL E
Sbjct: 131 AH-LMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLSE 189
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+ D + ALI NP+ +++ L++++PGPDFPT G+I G GI + Y TGRG+I VRG+ VE
Sbjct: 190 VADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIRVRGRVFVE 249
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+++ E+PYQ NK+ L+EK+AELV++K +DGI +RDESD+ GMRI I LK
Sbjct: 250 KGKDDHDET-IVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGLK 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R +V+N LY+ T L+++F NM+ +++ +P+ + LKE+L+ F+ R ++ RR RF
Sbjct: 309 RNQFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEIIVRRTRF 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + +ER HI+EG+ + LDNLD V+ ++R + S + A L ++F L++ QA AILDM
Sbjct: 369 DLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQFGLTQIQAQAILDMR 428
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L++LT LER+K ++E K ++QI E+L S + +L LI++E+ +LK F R + +
Sbjct: 429 LQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIVLDLIKKELADLKAEFGDERRTQI- 487
Query: 567 DADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
GQ +I D+I +EM++ +S GY+KR + Q RG GK+ R +D +
Sbjct: 488 ---MGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYRKQRRGGRGKTAMGTREDDFV 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
V +HD L+F++RG V+ + Y+IP+ R + GT +V +L+ ++GE + +++ V
Sbjct: 545 DRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRASRGTAIVNLLNFNEGEDLATVLSVP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF+ F++M T G +KK + +S R+ G+IA+ L GDEL VR V + S
Sbjct: 605 EFSPGLFVLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDELIAVRITDGSWNVFLGS 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
QNG + +R + R RG M L+ D + M+++ SH N
Sbjct: 665 QNGKSVRFLESDVRPMGRLARGVKGMTLEKDDHVVGMEVL--------------SHGNT- 709
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYKFSAED-RLAAVFVVGFSLA 859
L+ ++E+G+GKR + + P+NR G+I K + + ++ A+ +V
Sbjct: 710 ------LMTITENGYGKRTEIDEY---PVNRRGGKGVITIKTTKRNGKVVAILLV----- 755
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E+D+++++++ G + RI V +S+ +R +GV L+ +E + A+ ++
Sbjct: 756 ---ENDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLA 806
>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
Length = 852
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/830 (43%), Positives = 538/830 (64%), Gaps = 34/830 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + EEM G+YI YSMSV++ RALPDVRDG+KPVHRRILF M ELG+ KP KK A
Sbjct: 9 IIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPHKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLGK+HPHGD+AVYD++VRMAQ +SLRY L+ G GNFGSID D AAMRYTE RL
Sbjct: 69 RIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMRYTEARL 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E ML+ DI++DTV++ NFD+S KEP +LPA++P LLLNGASGIAVGMATN+ PHN
Sbjct: 129 KRIAEEMLV-DINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++ + A I N E T+ EL+EY+ PDFPTGG+I G G+ A+ TGRGRI +RGK
Sbjct: 188 LGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIVMRGKA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E D +K M ++I EIPY NK+ +VEK A+L+ K +DGIS IRDESDRSGMRIV
Sbjct: 248 NIETKDGGNKEM-IVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGMRIVY 306
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A PS+++N+LY+ T LQ+SFS N V ++ G+P + LK+++ ++D R VV RR
Sbjct: 307 ELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEVVIRR 366
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+++L + ++R HI++G ++ LD+LD VI ++R + TA L + F LSE QA AIL
Sbjct: 367 TQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIERFDLSEIQARAIL 426
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT +ER+K + E K +M I +L+E+L + +++I+ E+ E+K+R++ R +
Sbjct: 427 DMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKTELTEMKDRYADDRRT 486
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+E ++ D+IPN+E+++ +S +GYVKR + Q RG +G + +D
Sbjct: 487 EIE-HNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGGVGSRGVSTKEDDFT 545
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
H+++L F+D+G ++ +AY IPE + + G P+ ++++ +RI SII V
Sbjct: 546 EYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTSKGRPIQNLINIQSDDRIRSIIQVN 605
Query: 683 ----SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
+++ + FLVM+T G IKK +L +S RT GIIA+ + D+L V+ D
Sbjct: 606 DLNDADYINNHFLVMVTKKGVIKKTTLEQYSRPRTNGIIALNIREDDQLVNVKMTNGDQH 665
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ +A+++G I +R + R G A+ L D + ++ A+ ED+
Sbjct: 666 IVIAAKSGRAIHFPETAVRPMGRTATGVKAITLTGQDDFV-IGMVCAS---------EDT 715
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+ LL VSE+G+GKR L+ +R NR G + D+ A+ ++
Sbjct: 716 AT---------LLVVSENGYGKRSYLNEYR--ITNRGGKGVKAMNVTDKTGAL----VAI 760
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS 908
E ++D+ ++++++SG + RI + + I R +GV L+++ S +I S
Sbjct: 761 KEVTDADD-LMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISS 809
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNL-QNRGTIGKSVGKLRVNDAMSDFIVCRA 631
L+D D I N+ L+ +++KG +K+ ++ + G I ++ R +D + + +
Sbjct: 607 LNDADYI-NNHFLVMVTKKGVIKKTTLEQYSRPRTNGIIALNI---REDDQLVNVKMTNG 662
Query: 632 HDHVLYFSDRGIVYSARAYKIPECT-----RNAAGTPLVQILSLSDGERITSIIPVSEFA 686
H++ + G RA PE R A G + + D + ++ SE
Sbjct: 663 DQHIVIAAKSG-----RAIHFPETAVRPMGRTATGVKAITLTGQDD--FVIGMVCASEDT 715
Query: 687 GDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMAS 743
L++++ NGY K+ LN + ++ G+ A+ + L ++ T+ D + + +
Sbjct: 716 A--TLLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVTDKTGALVAIKEVTDADDLMIIN 773
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
++G++I S D +R + R T+G +++ D D+++S+
Sbjct: 774 KSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810
>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
pseudonana CCMP1335]
gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
pseudonana CCMP1335]
Length = 820
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/847 (42%), Positives = 516/847 (60%), Gaps = 52/847 (6%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
+ Y++S++LGRALPD RDG+KPVHRRIL+AM+ LGLS ++KCARVVGEVLGK+HPHG
Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60
Query: 158 DNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQ 217
D AVYD+LVR+AQ FS PLI GHGNFGSID DPAAAMRYTECRL ++ LL DI
Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120
Query: 218 DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIH- 276
DTV F+PNFD S+ EPS+LPA++P LLLNG +GIAVGMATN+PPHNLGEL+D AL
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180
Query: 277 ----NPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDS-- 330
E T +LL+ +P PDFPTG I+G G Y TG G + +R +E + +
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240
Query: 331 ---KSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKR 387
KS R +I+ E+PYQ NK+ L+E+IA LV K L+GI+D+RDESDR G+R+VIELKR
Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300
Query: 388 GADPSIVVNSLYRLTALQSSFSCNMVGILDG--QPKQMGLKEVLQAFLDFRCSVVERRAR 445
A ++V N+L + T+LQ++FS N + + G P++ L+E L FLDFR + +
Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL----KDEFKLSEKQADA 501
F+L +V+ R HIV G+++ L++ D VI IVR AP ++A AAL + LS QADA
Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSAQADA 420
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
+L + L +LT L K DE KTL E L LL++ + + +E + +K RF TPR
Sbjct: 421 VLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRFGTPR 480
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK--SVGKLRV 619
+ + D DID++ N+ ++ ++ GY+KRM TF QNRGT GK + +
Sbjct: 481 KTKIL-PDEEDKADIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGTSNTISD 539
Query: 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
++A++ C HD VL + G+ Y RAY++PE R A G P+ +L + + ITS+
Sbjct: 540 DNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSDDVITSV 599
Query: 680 IPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739
+PVSEF+ ++F+V+ T G+IKK L F + G+I L GD L W CT++D +
Sbjct: 600 LPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCTDNDDI 659
Query: 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSH 799
+ S G +R +R +RG +M LK GD +A M+++ ED
Sbjct: 660 LVGSTRGQATRFKAADLRPTARTSRGVKSMTLKKGDTIADMNVL----------RKEDK- 708
Query: 800 SNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA---EDRLAAVFVVGF 856
++L V+ G+GKRV FR G+I KF A +DR++ + VV
Sbjct: 709 ---------FVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVV-- 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL-SG-KIQSASLISV 914
D++++L++ G + R KV DIS Q R A GV++ ++++ SG I + S++
Sbjct: 758 ------NEDDEILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVPK 811
Query: 915 TEPETDL 921
+ + D+
Sbjct: 812 EDADGDV 818
>gi|421770096|ref|ZP_16206798.1| DNA gyrase subunit A [Lactobacillus rhamnosus LRHMDP2]
gi|421771499|ref|ZP_16208158.1| DNA gyrase subunit A [Lactobacillus rhamnosus LRHMDP3]
gi|411182904|gb|EKS50047.1| DNA gyrase subunit A [Lactobacillus rhamnosus LRHMDP2]
gi|411185088|gb|EKS52217.1| DNA gyrase subunit A [Lactobacillus rhamnosus LRHMDP3]
Length = 870
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 527/835 (63%), Gaps = 40/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPEKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ +P+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + K R HI+EG+ + LD++D +I I+R + + A L D+F LS+KQ+ AI
Sbjct: 365 RTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DG D +++++ SG + R ++++S R GV L+R++ K+ + + +
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807
>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
Length = 860
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/840 (42%), Positives = 528/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ+FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + +++ A +L++ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|420417025|ref|ZP_14916131.1| DNA gyrase, A subunit [Helicobacter pylori NQ4044]
gi|393035297|gb|EJB36343.1| DNA gyrase, A subunit [Helicobacter pylori NQ4044]
Length = 828
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/822 (43%), Positives = 537/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLINGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLDPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG +RL + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVI------------- 708
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETRRNASGVKLI 797
>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
Length = 886
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|420465399|ref|ZP_14964166.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-6]
gi|393082886|gb|EJB83602.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-6]
Length = 831
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/830 (43%), Positives = 543/830 (65%), Gaps = 32/830 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRMDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDGIVQLIKTSQSPEAAKNALM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L+ E+I + + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVS 657
Query: 730 VRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ N + +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 658 AKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVI----- 712
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
+DS+ LL VSE+G GK+ ++R+ G+IG + + +
Sbjct: 713 ------SDDSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMRLTQK--- 754
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 755 -TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 801
>gi|418071428|ref|ZP_12708702.1| DNA gyrase subunit A [Lactobacillus rhamnosus R0011]
gi|423077498|ref|ZP_17066197.1| DNA gyrase, A subunit [Lactobacillus rhamnosus ATCC 21052]
gi|357538922|gb|EHJ22942.1| DNA gyrase subunit A [Lactobacillus rhamnosus R0011]
gi|357554116|gb|EHJ35846.1| DNA gyrase, A subunit [Lactobacillus rhamnosus ATCC 21052]
Length = 870
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 527/835 (63%), Gaps = 40/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ +P+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + K R HI+EG+ + LD++D +I I+R + + A L D+F LS+KQ+ AI
Sbjct: 365 RTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DG D +++++ SG + R ++++S R GV L+R++ K+ + + +
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807
>gi|339443690|ref|YP_004709694.1| hypothetical protein EGYY_00060 [Eggerthella sp. YY7918]
gi|338903442|dbj|BAK43293.1| hypothetical protein EGYY_00060 [Eggerthella sp. YY7918]
Length = 931
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/826 (42%), Positives = 527/826 (63%), Gaps = 34/826 (4%)
Query: 89 LHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 148
L +EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM+E G + +P K AR VG+
Sbjct: 98 LGKEMQTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 157
Query: 149 VLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSE 208
V+GK+HPHGD+AVYD++VR+AQ FS+R PL+ GHGNFGSID D AAAMRYTE RL+ +
Sbjct: 158 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDSAAAMRYTEARLDKAA- 216
Query: 209 AMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELV 268
LL D+D++TV+F PN+DES +EP++LPAR P LL+NG++GIAVGMATNIPPHNLGE +
Sbjct: 217 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSNGIAVGMATNIPPHNLGETI 276
Query: 269 DVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELL 328
D C ++ NP+ T +EL++ MPGPDFPTGG+IMG GILDAY TGRG +TVR K +V+
Sbjct: 277 DATCLMLDNPDVTTEELMKVMPGPDFPTGGIIMGKKGILDAYETGRGSLTVRAKCKVQ-- 334
Query: 329 DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRG 388
+ K+ R +++ EIPYQ N++ L+EK+ ELV +K L +S+I D +DR G+ I+I+LK+
Sbjct: 335 EGKNGRSSIVVTEIPYQVNRNRLLEKLGELVRDKKLPEVSNIHDAADRHGIDIIIDLKKD 394
Query: 389 ADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKL 448
A P +V+N L++ T LQ F M+ ++DG P+ + LKE+L ++ + V+ RR R++L
Sbjct: 395 AIPQVVLNKLFKHTQLQVGFGVIMLSLVDGVPRVLSLKEMLHYYILHQKEVITRRTRYEL 454
Query: 449 SQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR 508
++ +ER HI++G++V LDN+D VI I+R + ++ AS + + F LS+KQ +AIL+M LR
Sbjct: 455 AKAEERAHILQGLIVALDNIDEVIHIIRSSQTDKEASERMIERFDLSKKQTEAILEMRLR 514
Query: 509 RLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568
RLT LER K E L+E+I + +LS + ++I++E+ E+K +F + R ++L +A
Sbjct: 515 RLTGLERDKIESELAELLEKIAYYKRVLSDENLVHEIIKEELQEVKKKFGSSRKTLLSEA 574
Query: 569 DSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628
+ LD D+I + M++ +++ GYVKR+ T+ Q RG G L+ ND + V
Sbjct: 575 -AKDLDVEDLIAEENMVVTVTKSGYVKRLPVATYRQQKRGGKGMQGVNLKDNDYVEHLFV 633
Query: 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
H ++L+FS +G VY + Y++PE R+A GT +V +L L GE I+++I +F D
Sbjct: 634 ASTHSYMLFFSTKGKVYRLKVYELPEAGRHARGTAIVNLLPLERGETISAVIATKDFPSD 693
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
++L+ T +G +KK S++L+ R G+IAI L D L VR + V M S G
Sbjct: 694 EYLMFATEHGMVKKTSMDLYDRTRRDGLIAINLKDNDALISVRRVAPGEKVLMVSSAGKA 753
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I+ +R++ R+T G M + K+ M+I PE
Sbjct: 754 IMWDEGEVRAMGRDTMGVRGMNVPPIAKVLGMEIA----------QPETD---------- 793
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAEDGESDEQ 867
L ++E G+GKR + + + G+ + + LAA+ +VG D++
Sbjct: 794 -LFVITEKGYGKRTSIGEYPEHHRGGQGVFTITMTEKKGLLAAMKIVGV--------DDE 844
Query: 868 VVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
++++S+ G R V+ IS R +GV +M + + ++ + ++ S
Sbjct: 845 IMIMSEEGVCVRTPVKGISELGRSTQGVRVMNVADNDRVTAVAISS 890
>gi|417000056|ref|ZP_11940410.1| DNA gyrase, A subunit [Veillonella parvula ACS-068-V-Sch12]
gi|333976302|gb|EGL77171.1| DNA gyrase, A subunit [Veillonella parvula ACS-068-V-Sch12]
Length = 822
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/841 (42%), Positives = 538/841 (63%), Gaps = 33/841 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITTEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + SK K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-SKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ +F M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S +R + R G ++L GD + ++ ++S + V
Sbjct: 667 TKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVL----------NTDESEAQV 716
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+SE G GKR ++ L + G G K F ++ V V E
Sbjct: 717 --------FTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYA-RGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI+++ A GV L+ K+ S ++I E E +
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEE 820
Query: 921 L 921
+
Sbjct: 821 V 821
>gi|420452020|ref|ZP_14950870.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-6]
gi|393069861|gb|EJB70656.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-6]
Length = 828
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 540/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEIKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++ +S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVTMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
Length = 870
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 527/835 (63%), Gaps = 40/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ +P+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + K R HI+EG+ + LD++D +I I+R + + A L D+F LS+KQ+ AI
Sbjct: 365 RTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DG D +++++ SG + R ++++S R GV L+R++ K+ + + +
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807
>gi|379647323|gb|AFD04635.1| DNA gyrase subunit A [Veillonella parvula]
Length = 822
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/841 (42%), Positives = 538/841 (63%), Gaps = 33/841 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITTEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + SK K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-SKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ +F M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S +R + R G ++L GD + ++ ++S + V
Sbjct: 667 TKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVL----------NTDESEAQV 716
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+SE G GKR ++ L + G G K F ++ V V E
Sbjct: 717 --------FTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLISVTEPETD 920
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I E E +
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEE 820
Query: 921 L 921
+
Sbjct: 821 V 821
>gi|420431380|ref|ZP_14930399.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-16]
gi|393048973|gb|EJB49939.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-16]
Length = 828
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|402851160|ref|ZP_10899331.1| DNA gyrase subunit A [Rhodovulum sp. PH10]
gi|402498530|gb|EJW10271.1| DNA gyrase subunit A [Rhodovulum sp. PH10]
Length = 967
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/945 (41%), Positives = 549/945 (58%), Gaps = 93/945 (9%)
Query: 67 RNGNGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILF 126
R+G+G + GP+ I PV + EEM +Y+ Y+MSV++ RALPD RDGLKPVHRRILF
Sbjct: 33 RSGSGPEGS-GPS---DIRPVSISEEMKRAYLDYAMSVIVSRALPDARDGLKPVHRRILF 88
Query: 127 AMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFG 186
+MHE G + + K ARVVG+V+GK+HPHGD A+YD+LVRMAQDFS+R PLI G GNFG
Sbjct: 89 SMHENGHLPDRKYVKSARVVGDVMGKYHPHGDQAIYDALVRMAQDFSMRLPLIDGQGNFG 148
Query: 187 SIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLN 246
S+D DP AAMRYTECRL A LL DID+DTV+F PN+D +++EP +LPAR P LL+N
Sbjct: 149 SVDGDPPAAMRYTECRL-ARPAMSLLDDIDKDTVDFRPNYDGNEQEPEVLPARFPNLLVN 207
Query: 247 GASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGI 306
GA GIAVGMATNIPPHNLGE++D ALI PE L ELLE +PGPDFPTGGLI+G GI
Sbjct: 208 GAGGIAVGMATNIPPHNLGEIIDAAVALIDRPELGLAELLEIVPGPDFPTGGLILGRAGI 267
Query: 307 LDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDG 366
AY TGRG I +RGK EVE + + R +++ EIPYQ NK+ LVEKIAELV K ++G
Sbjct: 268 RAAYSTGRGSIVMRGKAEVETI--RKDREAIVVTEIPYQVNKATLVEKIAELVREKRIEG 325
Query: 367 ISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLK 426
+SD+RDESDR G R+V+ELKR A P +V+N LYR T LQ++F NMV + G+P+ M LK
Sbjct: 326 VSDLRDESDREGYRVVVELKRDAVPDVVLNQLYRFTPLQTTFGANMVALDGGRPQVMALK 385
Query: 427 EVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASA 486
++L AF+ FR VV+RR ++ L + ++R H++ G+ V + N+D VIR++R + A
Sbjct: 386 DLLTAFVAFREEVVKRRTKYLLGKARDRAHVLVGLAVAVANIDEVIRLIRSSRDAVEARE 445
Query: 487 AL--------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVD 520
AL FKLS +QA AILD+ L+RLT L R + D
Sbjct: 446 ALMARDWPAADVLPLILLIDDPRHAVQEDGTFKLSSEQARAILDLRLQRLTALGRDEIKD 505
Query: 521 ESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIP 580
E L +I ++L SR I +++ E+ E++ +++TPR +++ D D G+++D D+I
Sbjct: 506 ELDKLAAEITDYLDILRSRARIQSIVKAELTEVREKYATPRRTVILDQD-GEMEDEDLIQ 564
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
++M++ +S GYVKR+ +T+ Q RG G+S + R D ++ V H VL+FS
Sbjct: 565 REDMVVTVSHLGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSS 624
Query: 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMN 697
RG VY + +++P NA G L+ +L L ERI +I+P+ E D ++ T
Sbjct: 625 RGQVYKEKVWRLPLAAPNARGKALINLLPLEQDERINTIMPLPEDESTWADLHVMFATTR 684
Query: 698 GYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIR 757
G +++ L+ FS +R +GIIA++L G+ + V+ C DD V + + G I +R
Sbjct: 685 GTVRRNKLSDFSDVRRSGIIAMKLDDGEAIVDVQICGADDDVLLTTTKGQCIRFPVTDVR 744
Query: 758 SLS-RNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV--KGSSG------- 807
+ R++ G + L +GD++ S+ I+ ER +N +G +G
Sbjct: 745 VFAGRSSMGVRGIALDEGDRVISLSILRHVEASGEERDAYLKRANAVRRGGNGDAEEGVD 804
Query: 808 ---------------------------------PWLLFVSESGHGKRVPLSSFRKLPLNR 834
++L VSE G GKR +R
Sbjct: 805 AEGAVPDAEDGEEPTGADVALGEARYVELSAAEQFVLTVSERGFGKRTSSYEYRTTGRGG 864
Query: 835 VGLIG----YKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G++ + A V F + ESDE ++LV+ G + R V ISI+ R
Sbjct: 865 KGIVAMDNRMRSGAIRPRIGCLVASFPVE---ESDE-LMLVTDGGQLIRCPVAQISIKGR 920
Query: 891 YARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESG 935
+GVI+ K+ S +S E E + TS+ ATE G
Sbjct: 921 KTQGVIVFDTAEGEKVVSVERLSEHEAEGE-----TSNGDATEGG 960
>gi|420511233|ref|ZP_15009720.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-1b]
gi|393119717|gb|EJC20207.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-1b]
Length = 828
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/822 (43%), Positives = 541/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARVHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
Length = 841
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/835 (42%), Positives = 525/835 (62%), Gaps = 39/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+++ EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M G + KP++K
Sbjct: 9 KIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTPDKPYRKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
VGE L FHPHGD AVYDSLVRMAQDFSLR+PL+ GHGNFGS D D AAAMRYTE +
Sbjct: 69 VATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAAMRYTEAK 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S M LADI++DTV+F PNFDE + EP +LPAR P LL+NG+SGIAVGMATNIPPH
Sbjct: 129 LAKISMEM-LADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQEL-LEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
NLGE +D +CA++ NPE T+ EL ++Y+ GPDFPT I+G GI DAY+TGRGR+ VR
Sbjct: 188 NLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRGRLIVRS 247
Query: 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MR 380
+ +E L R +++ EIPY NK+ LVEKIA+LV++K +DGIS I+DES R +R
Sbjct: 248 EATIEELHGNRHR--IVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGREEPVR 305
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-----QPKQMGLKEVLQAFLDF 435
IVI+LKR A+P++V+N LY+ T LQ SFS NMV I+ +P+ + LK+V+ ++
Sbjct: 306 IVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDYYIAH 365
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
+ V+ RR +F+L + + R HI+EG+ + LDNLD VIRI+R + + S A L + F S
Sbjct: 366 QEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSERFGFS 425
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
+KQ+ AI+DM L RLT LER+K E L+E+I ++L++ + Q+I+ E+ +KN
Sbjct: 426 DKQSQAIVDMRLGRLTGLEREKLESEYNELLEKIKYFRDVLANEILVHQIIKDELTVIKN 485
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+++ R + +E + ++D D+I E ++ ++ GY+KR+ +T+ Q RG G
Sbjct: 486 KYADERRTKIEIDED-EIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRRGGKGIIGL 544
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
R D + + V H +++F+++G VY +AY+IPE R A GT +V +L L+ E+
Sbjct: 545 STREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLNGDEK 604
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
+T++IP+ E+ +LVM T NG +KK L + SIR G+ A+ L DEL V+
Sbjct: 605 VTTVIPIQEYKEGLYLVMATKNGLVKKTDLMEYDSIRKGGLAAVSLRENDELIDVKLTDG 664
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + +++ NGM I R + R ++G M L +GD + M++
Sbjct: 665 NQDIILSTVNGMAIRFKETDARPIGRVSQGVKGMELDEGDFIIGMEVC------------ 712
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ LL V+E+G GKR L ++ G++ Y+ + + + +G
Sbjct: 713 ---------TDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKS----IG 759
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
L + D+ ++L+S GT+ R+KV +ISI R +GV LMR+ + S +
Sbjct: 760 MLLVSE---DDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVA 811
>gi|87160436|ref|YP_492728.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
gi|418286891|ref|ZP_12899527.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21209]
gi|418648789|ref|ZP_13210826.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-88]
gi|418650065|ref|ZP_13212087.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-91]
gi|418910551|ref|ZP_13464539.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG547]
gi|418924453|ref|ZP_13478358.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG2018]
gi|93204587|sp|Q2FKQ0.1|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
gi|365165055|gb|EHM56884.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21209]
gi|375025204|gb|EHS18611.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-88]
gi|375028534|gb|EHS21877.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-91]
gi|377728365|gb|EHT52467.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG547]
gi|377747657|gb|EHT71621.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG2018]
Length = 887
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|384156331|ref|YP_005539146.1| DNA gyrase subunit A [Arcobacter butzleri ED-1]
gi|345469885|dbj|BAK71336.1| DNA gyrase subunit A [Arcobacter butzleri ED-1]
Length = 860
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/840 (42%), Positives = 526/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + +++ A +L+ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|383749630|ref|YP_005424733.1| DNA gyrase subunit A [Helicobacter pylori ELS37]
gi|380874376|gb|AFF20157.1| DNA gyrase subunit A [Helicobacter pylori ELS37]
Length = 828
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/822 (43%), Positives = 537/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ R F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRCTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRCTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R+TRG + +RL + D + +I
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVGAVVI------------- 708
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 709 -------SDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETRRNASGVKLI 797
>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
gi|385826726|ref|YP_005864498.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
gi|259648371|dbj|BAI40533.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
Length = 870
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/835 (41%), Positives = 527/835 (63%), Gaps = 40/835 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ +P+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L + K R HI+EG+ + LD++D +I I+R + + A L D+F LS+KQ+ AI
Sbjct: 365 RTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F QNRG G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE +R A G P++ +L + GE+I ++I V
Sbjct: 545 VEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T NG +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R G +RL+D D + DI L D E
Sbjct: 665 GTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K + LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DG D +++++ SG + R ++++S R GV L+R++ K+ + + +
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807
>gi|398799248|ref|ZP_10558540.1| DNA gyrase, A subunit [Pantoea sp. GM01]
gi|398099116|gb|EJL89388.1| DNA gyrase, A subunit [Pantoea sp. GM01]
Length = 879
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/857 (41%), Positives = 541/857 (63%), Gaps = 69/857 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S + LLAD++++TV+FVPN+D +++ P +LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIS-SELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + T++ L+E++ GPDFPT I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAFIEDEDITVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+K+ R +I+ E+PYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARGEVET-DAKTGRETIIVHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VIE+KR A +V+N+LY LT LQ SF NMV + GQPK M LK +++AF+ R
Sbjct: 301 MRVVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKGIIEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKLGLLAQSWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGNDAARPEWLEAEFGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S + ++++I +E++ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLDQIAELLYILQSAERLMEVIREELVLMRDQFGDARRTEI-TANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIAI L DEL V D + S G V+ + +R++ R+
Sbjct: 660 LQEFSRPRSAGIIAINLREDDELIGVALTNGSDEAMLFSAAGKVVRFAETAVRAMGRSAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L DK+ S+ I+P +G+ +L V+++G+GKR
Sbjct: 720 GVRGIKLSANDKVVSL-IVPRE----------------EGA----ILTVTQNGYGKRTAN 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882
S + G+I K + + + AV VV DG +Q+++++ +GT+ R +V
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVV------DG---DQIMMITDAGTLVRTRV 809
Query: 883 RDISIQARYARGVILMR 899
++S+ R +GVIL+R
Sbjct: 810 SEVSVVGRNTQGVILIR 826
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
LR +D + + D + FS G V + R+A+G V+ + LS +++
Sbjct: 676 LREDDELIGVALTNGSDEAMLFSAAGKVVRFAETAVRAMGRSASG---VRGIKLSANDKV 732
Query: 677 TS-IIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP--GDELKWVR 731
S I+P E A ++ +T NGY K+ + + + S T G+I+I++ G + V+
Sbjct: 733 VSLIVPREEGA----ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVIGAVQ 788
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
D ++ M + G ++ + + + RNT+G + +R + + + +
Sbjct: 789 VVDGDQIM-MITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGL 836
>gi|387601297|ref|YP_005732818.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
Length = 889
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/859 (41%), Positives = 547/859 (63%), Gaps = 39/859 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ G + R+ V DIS R A+GV L+RL G Q S ++ + +
Sbjct: 763 E-----EDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRL---GDDQFVSTVAKVKEDA 814
Query: 920 DLFLPSTSDKLATESGVSE 938
D T++ + S VSE
Sbjct: 815 D---DETNEDEQSTSTVSE 830
>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
Length = 940
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/889 (41%), Positives = 537/889 (60%), Gaps = 70/889 (7%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++MHE G KP++K A
Sbjct: 21 IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 80
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+A+YD+LVRMAQ+FSLR PLI G GNFGS+D DPAAAMRYTECRL
Sbjct: 81 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 140
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++ LL DID+DTV+F N+D S+ EP +LPA+ P LL+NGA GIAVGMATNIPPHN
Sbjct: 141 EKVAH-RLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHN 199
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A++ NP TL+EL++ +PGPDFPTGG+I+G GI AY TGRG + +R K
Sbjct: 200 LGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYETGRGSVPMRAKV 259
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+ E + + R +I+ EIPYQ NKS ++EKIAE+V +K ++GISDIRDESDRSGMR+VI
Sbjct: 260 DTEEI--RKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDESDRSGMRVVI 317
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +V+N LYR + LQ+SF NMV + G+P+QM L ++L+AF+ FR V++RR
Sbjct: 318 ELKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVAFREEVIQRR 377
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
R+ L + ++R HI+ G+ + + N+D VI+++R AP +TA A L +
Sbjct: 378 TRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWPARDVEDLIR 437
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+KLSE+QA AILD+ L+RLT + R + +E + +I ++L
Sbjct: 438 LIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLDILR 497
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I +++ E++E++ F+TPR + + + D+ D+I ++M++ +S GY+KR+
Sbjct: 498 SRARIQEIVRNEMLEIREEFATPRRTEIIEG-GADFDEEDLIQREDMVVTVSHGGYIKRV 556
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGI Y + +++P
Sbjct: 557 PLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGP 616
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
+ G LV +L L GE+ITSI+P+ E + ++ T+ G +++ L+ F +I
Sbjct: 617 TSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLSDFVNINRN 676
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKD 773
G IA++L GD + V C+ + + + +G I + D+ RN+ G +RL D
Sbjct: 677 GKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVGVRGIRLAD 736
Query: 774 GDKMASMDIIP---------AALHK---------DLERTPEDSHSNVKG----------- 804
GD++ SM I+ AA K D D V G
Sbjct: 737 GDRIISMQILHHIDVDAEERAAYLKLSRAMRGEADENGAAADEDGVVAGELSQERYAEMS 796
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
++ +L +SE+G+GKR SSF R G G A + + F + E
Sbjct: 797 AAEQIILTISENGYGKRT--SSFEYRVTGRGGK-GITAMAVNHRNGGLIASFPV----ED 849
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+Q++LV+ G + R V I I R +GVI+ + K+ + IS
Sbjct: 850 SDQIMLVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGIS 898
>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
Length = 860
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/840 (42%), Positives = 527/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ+FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V+RI+R + +++ A +L+ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|403045151|ref|ZP_10900629.1| DNA gyrase subunit A [Staphylococcus sp. OJ82]
gi|402765215|gb|EJX19299.1| DNA gyrase subunit A [Staphylococcus sp. OJ82]
Length = 899
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/833 (40%), Positives = 540/833 (64%), Gaps = 31/833 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ +HE G++ K +KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPLI G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML D++++T++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKITLEML-RDLNKNTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +L HNP+ T+ EL+E + GPDFPTG LI+G GI A+ TGRG + +R +
Sbjct: 187 NLTEVINGVLSLSHNPDITISELMEDVQGPDFPTGALILGKSGIRRAFETGRGSVIMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+PYQ NK+ ++EKIAEL +K ++GI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+V+N+LY+ T LQ+SF NM+ +++G+P+ + LKE L +LD + VV
Sbjct: 305 VIDVRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPRLITLKEALVEYLDHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + +R HI+EG+ + LD++D +IR++RE+ ++ A A+L+++FKL+E+QA A
Sbjct: 365 RRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +L+ +L+ + +LQ++ E+I++++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNDLIAYIEELKAILADEEKLLQIVRDELIDVRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ Q+RG G D
Sbjct: 485 KTEIQLGGLDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDSDESISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T+ G +K+ +L+ FS I G IAI DEL VR + +
Sbjct: 605 VKDLESEEDYLVFATLKGRVKRSALSNFSRINRNGKIAINFKDDDELIAVRLTDGETDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GDK+ +D+
Sbjct: 665 IGTAHASLIRFHETALRPLGRTAAGVKGITLREGDKVVGLDV------------------ 706
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
K +L V+E+G+GKR P+ +R L+ G G K + V S+
Sbjct: 707 -TKAEQDDEILVVTENGYGKRTPVGDYR---LSNRGGKGIKTATITERNGNIVCITSVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
GE D +++V+ SG + RI V DIS R A+GV L++L+ + + + ++++
Sbjct: 762 -GEED--LMVVTNSGVIIRIDVNDISQNGRAAQGVRLIKLDDNQFVSTVAIVN 811
>gi|398792803|ref|ZP_10553364.1| DNA gyrase, A subunit [Pantoea sp. YR343]
gi|398212500|gb|EJM99108.1| DNA gyrase, A subunit [Pantoea sp. YR343]
Length = 879
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/855 (41%), Positives = 540/855 (63%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM ELG KP
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+S+VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S + LLAD++++TV+FVPN+D +++ P +LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMAKIS-SELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + T++ L+E++ GPDFPT I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAFIEDEDITVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+K+ R +I+ E+PYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARGEVET-DAKTGRETIIVHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MR+VIE+KR A +V+N+LY LT LQ SF NMV + GQPK M LK +++AF+ R
Sbjct: 301 MRVVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKGIIEAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKLGLLAQSWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGNDAARPEWLEAEFGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S + ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLDQIAELLHILQSAERLMEVIREELELMRDQFGDARRTEI-TANSADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIAI L DEL V D + S G V+ + +R++ R+
Sbjct: 660 LQEFSRPRSAGIIAINLREDDELIGVALTNGSDEAMLFSAAGKVVRFAETAVRAMGRSAS 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L + DK+ S+ I+P +G+ +L V+++G+GKR
Sbjct: 720 GVRGIKLAESDKVVSL-IVPRE----------------EGA----ILTVTQNGYGKRTAN 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K + DR V+G DG +Q+++++ +GT+ R +V +
Sbjct: 759 TEYPTKSRATQGVISIKVT--DRNGP--VIGAVQVVDG---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
+S+ R +GVIL+R
Sbjct: 812 VSVVGRNTQGVILIR 826
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 617 LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
LR +D + + D + FS G V + R+A+G V+ + L++ +++
Sbjct: 676 LREDDELIGVALTNGSDEAMLFSAAGKVVRFAETAVRAMGRSASG---VRGIKLAESDKV 732
Query: 677 TS-IIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP--GDELKWVR 731
S I+P E A ++ +T NGY K+ + + S T G+I+I++ G + V+
Sbjct: 733 VSLIVPREEGA----ILTVTQNGYGKRTANTEYPTKSRATQGVISIKVTDRNGPVIGAVQ 788
Query: 732 CCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
D ++ M + G ++ + + + RNT+G + +R + + + +
Sbjct: 789 VVDGDQIM-MITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGL 836
>gi|357384495|ref|YP_004899219.1| DNA gyrase subunit A [Pelagibacterium halotolerans B2]
gi|351593132|gb|AEQ51469.1| DNA gyrase subunit A [Pelagibacterium halotolerans B2]
Length = 905
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/899 (40%), Positives = 544/899 (60%), Gaps = 78/899 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRILF+MHE G KP++K A
Sbjct: 5 INPISITDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHEQGYEYNKPYRKSA 64
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPH D+AVY SLVRMAQ FS+R PLI G GNFGS+D D AAMRYTE R+
Sbjct: 65 RVVGDVIGKYHPHSDDAVYMSLVRMAQTFSMRVPLIDGQGNFGSVDGDMPAAMRYTEARM 124
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++ LL D+D+DTV+F N+D S++EP++LPAR P LL+NG GIAVGMATNIP HN
Sbjct: 125 EKVT-GSLLDDLDKDTVDFRDNYDASEREPTVLPARFPNLLVNGGGGIAVGMATNIPSHN 183
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D A++ N + T+ EL+E +PGPDFPT G+I+G GI AY TGRG + +RG+
Sbjct: 184 LGEVIDACLAMMDNSDITVDELMEIIPGPDFPTAGIIIGKSGIRSAYETGRGSVLMRGRV 243
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
VE + + +R +I+ EIPYQ NK+ ++EKIAE+V +K ++GI+DIRDESDR GMR+VI
Sbjct: 244 TVE--EVRKEREALIVHEIPYQVNKATMIEKIAEMVRDKRIEGIADIRDESDRQGMRVVI 301
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR + LQ+SF CN V + G+P+ M L+ +LQAFL FR V+ RR
Sbjct: 302 ELKRDAVADVVLNQLYRYSMLQTSFGCNFVALNGGKPELMNLQSILQAFLRFREEVITRR 361
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
RF L++ ++R H++ G++V ++N+D VIR++R +P +TA L +
Sbjct: 362 TRFLLNKARDRAHVLVGLLVAVNNVDEVIRLIRSSPDPATARQKLLERDWPASDVIDLIQ 421
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
FKLS++QA AIL + L RLT L R + DE L EQI ++L
Sbjct: 422 LIDDPRHQINSDGTFKLSDEQARAILALTLSRLTALGRNEIGDELNALGEQIKDYLDILR 481
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR+ +L +I E++E+K++++TPR++ + D +G LDD D+I ++M++ +S GY+KR+
Sbjct: 482 SRERVLGIIRDELVEVKDQYATPRMTQI-DEFAGDLDDEDLIAREDMVVTVSHAGYIKRV 540
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+T+ Q RG G+S R D ++ V H VL+FS RGIVY + +++P
Sbjct: 541 PLSTYRAQRRGGKGRSGMSTRDEDFVARLFVANTHTPVLFFSSRGIVYKMKVWRLPVAAP 600
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQF----LVMLTMNGYIKKVSLNLFSSIRT 713
A G L+ +L L DGERITSI+P+ E D + ++ +T +G +++ L+ F +R
Sbjct: 601 QARGKALINMLPLEDGERITSIMPLPEDE-DSWASLDVMFVTQSGNVRRNKLSDFVEVRQ 659
Query: 714 TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAMRLK 772
G IA++L GD + V + D + + + G I + +R R++ G + L
Sbjct: 660 NGKIAMKLDEGDGIVGVETASESDDILITTAKGQCIRFAITDVRVFKGRDSTGVRGINLA 719
Query: 773 DGDKMASMDII----------------PAALHKDLERTPEDSHSNVK------------- 803
GD++ +M I+ A+ + + T E + ++ +
Sbjct: 720 SGDEVIAMSILRHFDASAEERAAYLKMSRAVRGETDETVEAAEADDEVVGDAPLDQDRYA 779
Query: 804 --GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAE 860
++ ++L +SE G GKR +R G++ ++ + L F V
Sbjct: 780 SMSAAEQFVLTISEKGFGKRTSSFEYRVTGRGGKGIVAMAVNSRNGNLVGSFPV------ 833
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E + Q++LV+ G V R+ V I I R ++GV + R K+ S I TEPE+
Sbjct: 834 --EDENQLMLVTNGGQVIRVPVDGIRIVGRSSQGVTIFRTAADEKVVSVERI--TEPES 888
>gi|420485731|ref|ZP_14984349.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4]
gi|420516229|ref|ZP_15014692.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4c]
gi|420518113|ref|ZP_15016566.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4d]
gi|393103866|gb|EJC04429.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4]
gi|393122787|gb|EJC23259.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4d]
gi|393124528|gb|EJC24996.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-4c]
Length = 828
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/823 (43%), Positives = 540/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI------------- 708
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
S N K LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 709 -SDDNNK------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
Length = 903
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/820 (41%), Positives = 534/820 (65%), Gaps = 31/820 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ +HE G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPLI G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F+ N+D +++EP++LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKITLEML-RDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +L +NP+ T+ EL+E + GPDFPT G+I+G GI A+ TGRG I +R +
Sbjct: 187 NLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+PYQ NK+ ++EKIAEL +K ++GI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+V+N+LY+ T LQ+SF NM+ +++G+PK + LKE L+ +L+ + VV
Sbjct: 305 VIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + +R HI+EG+ + LD++D +IR++RE+ ++ A A+L+++FKLSE+QA A
Sbjct: 365 RRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +L+E+L+ + +LQ++ E+I+++ R+ R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYIELIAYIEELKEILADEEKLLQIVRNELIDIRERYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
S ++ ++D D+IP +++++ +S Y+KR+ +T+ Q+RG G D
Sbjct: 485 RSEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDNDESISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D +LV T G +K+ +L+ FS I G IAI DEL VR + +
Sbjct: 605 VKDLESEDDYLVFATRKGRVKRSALSNFSHINKNGKIAISFKNDDELIAVRLTDGEQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I + +R L R G + L++ DK+ +D+ A
Sbjct: 665 IGTSHASLIRFNETTLRPLGRTAAGVKGITLREDDKVIGLDVTNA--------------- 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
S +L V+E+G+GKR P+ +R L+ G G K + V S+
Sbjct: 710 ----ESDEEILVVTENGYGKRTPVGDYR---LSNRGGKGIKTATITERNGNIVCITSVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
GE D +++V+ SG + RI V DIS R A+GV L++L
Sbjct: 762 -GEED--LMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKL 798
>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|384860688|ref|YP_005743408.1| DNA topoisomerase subunit A [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|387141644|ref|YP_005730037.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
gi|418281326|ref|ZP_12894139.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21178]
gi|418580683|ref|ZP_13144769.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1605]
gi|418890523|ref|ZP_13444648.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1176]
gi|418896381|ref|ZP_13450458.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418899315|ref|ZP_13453379.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1214]
gi|418907690|ref|ZP_13461708.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG149]
gi|418915847|ref|ZP_13469812.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1267]
gi|418921591|ref|ZP_13475515.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1233]
gi|418981975|ref|ZP_13529685.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1242]
gi|418984498|ref|ZP_13532193.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1500]
gi|59797754|sp|Q6GKT9.1|GYRA_STAAR RecName: Full=DNA gyrase subunit A
gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|365165427|gb|EHM57214.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21178]
gi|377705407|gb|EHT29712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1242]
gi|377708100|gb|EHT32392.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1214]
gi|377710097|gb|EHT34349.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1500]
gi|377713875|gb|EHT38083.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1605]
gi|377735390|gb|EHT59423.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1176]
gi|377737694|gb|EHT61704.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1233]
gi|377753674|gb|EHT77591.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1267]
gi|377760520|gb|EHT84399.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG149]
gi|377763108|gb|EHT86965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 886
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|365835782|ref|ZP_09377193.1| DNA gyrase, A subunit [Hafnia alvei ATCC 51873]
gi|364565338|gb|EHM43067.1| DNA gyrase, A subunit [Hafnia alvei ATCC 51873]
Length = 882
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/897 (40%), Positives = 551/897 (61%), Gaps = 67/897 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + T++ L++++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K EVE D KS R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ G
Sbjct: 242 IRAKAEVEA-DEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N LY LT +Q +F NMV + GQPK + LK+ LQAF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWVLGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI L +L S ++++I +E+I ++++F R + + + ++ ++ D+I +++
Sbjct: 481 LLEQIAALIFILESPDRLMEVIREELIAVRDQFGDARRTEITE-NTADINIEDLISQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRHVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S G V+ +RS+ R
Sbjct: 660 LTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L D++ S+ IIP +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLNGEDRVVSL-IIP------------------RGEGD--ILTVTENGYGKRTGV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K S + VVG A ++ +Q+++++ +GT+ R +V +
Sbjct: 759 AEYPTKSRATQGVISIKVSERNG----NVVG---AVQVDACDQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ 941
+S+ R +GV L+R + L V EPE D + + A E V+++ +
Sbjct: 812 VSVVGRNTQGVTLIRTAEDEHV--VGLQRVAEPEEDDEVLEGEEGAAVEGDVTDVAE 866
>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
Length = 838
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/832 (42%), Positives = 525/832 (63%), Gaps = 47/832 (5%)
Query: 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVG 147
EL EM S++ YSMSV++ RALPDVRDGLKPVHRRIL+AM++ G++ KP K AR VG
Sbjct: 21 ELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYDSGITPNKPHSKSARTVG 80
Query: 148 EVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALS 207
+V+GK+HPHGD+AVYD++VR+AQDF++R PL+ GHGNFGSID D AAAMRYTE RL A
Sbjct: 81 DVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGSIDGDSAAAMRYTEARL-AKP 139
Query: 208 EAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGEL 267
LLAD+ ++TV++VPN+DES +EPS+LPAR P LL+NG++GIAVGMATNIPPHNLGE
Sbjct: 140 AMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNIPPHNLGEA 199
Query: 268 VDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVEL 327
+D C ++ NP+ T +EL+E MPGPDFPTGG+I G GI+ AY TGRG +T++ +++
Sbjct: 200 IDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIISAYETGRGSLTIQSSYKIK- 258
Query: 328 LDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELK 386
+ K+ + +II EIPYQ N+S L++KI ELV +K L IS++ D +DR S + I+IELK
Sbjct: 259 -EGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNVHDGADRNSPVDIIIELK 317
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+ A P +V+N L++ T LQ + M+ ++DG P+ + L+E+L ++ + V+ RR +F
Sbjct: 318 QNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREILHYYILHQEDVIRRRTQF 377
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + + R HIVEG+++ LD++D VI I+R + ++ AS L + F LSE Q AIL M
Sbjct: 378 DLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLSERFGLSEAQCTAILQMQ 437
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
LRRLT LER+K +E L E+I + +L+ + Q+I++E+ E+K RF+TPR + +
Sbjct: 438 LRRLTGLEREKLQEELAELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRI- 496
Query: 567 DADSGQLDDIDI---IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+G DID+ I ++EM++ ++ GY+KR+ T+ Q RG G L+ ND +
Sbjct: 497 ---AGPAKDIDVEDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFV 553
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ H+++L+FS G VY + ++IPE R+A GT +V +L L GE I + I
Sbjct: 554 EHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATK 613
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF D+FL+ T G +KK +++L+ R G+IAI L GDEL V+ + VAM S
Sbjct: 614 EFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVS 673
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
G I +R++ R+T G M + DG + ++I
Sbjct: 674 SAGKAISWDESEVRAMGRDTMGVRGMTVPDGVHVLGLEI--------------------- 712
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY----KFSAEDRLAAVFVVGFSLA 859
S G + ++E G+GKR P+ + PL+ G G + + +LAA+ VV
Sbjct: 713 ASPGKEIFVITERGYGKRTPVEEY---PLHHRGGQGVFTITMTAKKGQLAAMKVV----- 764
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
S++ ++++S+ G V R V DIS R +GV +M ++ ++ + ++
Sbjct: 765 ---TSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDRVSAVAI 813
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 580 PNDEMLLAISEKGYVKRMKPNTFN-LQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF 638
P DE L+ +++G VK+ + ++ + G I + LR D + + + V
Sbjct: 616 PEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAIN---LREGDELIAVKRVKPGEKVAMV 672
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG 698
S G S ++ R+ G V+ +++ DG + + S G + V +T G
Sbjct: 673 SSAGKAISWDESEVRAMGRDTMG---VRGMTVPDGVHVLGLEIAS--PGKEIFV-ITERG 726
Query: 699 YIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNGMVILSSCDI 755
Y K+ + + G+ I + +L ++ T++D + + S+ G+V+ +S
Sbjct: 727 YGKRTPVEEYPLHHRGGQGVFTITMTAKKGQLAAMKVVTSEDALMIISEEGVVMRTSVSD 786
Query: 756 IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
I L R T+G M + D+++++ I P K + P+DS
Sbjct: 787 ISQLGRATQGVKVMNVDGKDRVSAVAIAPDGKRK---KRPKDS 826
>gi|420448718|ref|ZP_14947598.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-44]
gi|393066072|gb|EJB66900.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-44]
Length = 828
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
Length = 870
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/837 (41%), Positives = 523/837 (62%), Gaps = 43/837 (5%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+ +++P +L ++M S+I YSMSV++ RALPDVRDGLKPVHRRIL+AM+E G+ +P
Sbjct: 41 ASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNESGILPNRPHA 100
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR VG+V+GK+HPHGD AVYD++VRMAQ FS+ PL+ GHGNFGSID D AAAMRYTE
Sbjct: 101 KSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDGDSAAAMRYTE 160
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
RL A LL D+D++TV++ PN+DES KEP++LPAR P LL+NG+ GIAVGMATNIP
Sbjct: 161 ARL-ARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGIAVGMATNIP 219
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E++D C +I NP+ +L ELL+ MPGPDFPTG IMG GI +AY TGRG +T+R
Sbjct: 220 PHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIREAYETGRGSMTLR 279
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+ +K R + +KEIPY N++ L+EKI EL+ +K L IS++ D +DR G+
Sbjct: 280 AKCEIS--QTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDGADRHGID 337
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
I+IELK+ A P +V+N LY+ T +Q++F NM+ ++D P + LK++L ++ + V+
Sbjct: 338 IIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQILSYYIAHQIDVI 397
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R+ L + +ER HIV G+++ LDN+D VI I+R + ++ A L + F L E QA+
Sbjct: 398 TRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIENFNLDEIQAN 457
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL+M LRRLT LE K V+E + L E+I + +L + Q+I++E+ E+K +FS+
Sbjct: 458 AILEMRLRRLTGLEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSK 517
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + ++ A + +D D+I +++M++ +++ GYVKR+ T+ Q RG G L+ +
Sbjct: 518 RRTQIQRASAKDIDVEDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKED 577
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + V H ++L+FS +G VY + Y++PE R+A GT +V +LSL GE I ++I
Sbjct: 578 DFVEHLFVASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVI 637
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
+F +++L+ T G +KK S++L+ R G+IAI L GDEL V+ ++ + V
Sbjct: 638 ATKDFPKEEYLMFATSAGMVKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVF 697
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
M S G I+ R++ R+T+G M++ P D H
Sbjct: 698 MVSSAGKAIVWDESEARAMGRDTKGVRGMKV-----------------------PADEHV 734
Query: 801 NVKGSSGPW--LLFVSESGHGKRVPLSSFRKLPLNRVGLIG-YKFS---AEDRLAAVFVV 854
+ P L ++E G+GKR +S + PL+ G G Y + + LAA +V
Sbjct: 735 LEMSIAKPQADLFVITEKGYGKR---TSVYEYPLHHRGGQGVYTITMTRKKGELAAAKIV 791
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
DE++++++ G V R V+ +S R +GV +M + K+++ +
Sbjct: 792 --------TDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRAVGI 840
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
++ V+++G+ KR+PL+++R+ G+ G +D + +FV + ++
Sbjct: 542 VVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFV--------ASTHAYML 593
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE--PETDLFLPSTS 927
S G V R+KV ++ R+ARG ++ L K +S + + T+ P+ + + +TS
Sbjct: 594 FFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDFPKEEYLMFATS 653
Query: 928 DKLATESGVS 937
+ ++ +S
Sbjct: 654 AGMVKKTSMS 663
>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
aureus EMRSA16]
Length = 887
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 9 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 69 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 129 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 188 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 248 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 305
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 306 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 365
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 366 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 425
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 426 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 485
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 486 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 545
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 546 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 605
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 606 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 665
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 666 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 711 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 763
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 764 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 799
>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 826
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/859 (41%), Positives = 535/859 (62%), Gaps = 51/859 (5%)
Query: 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKK 141
P ++ V + EEM SY+ Y+MSV++GRALPDVRDGLKPV RRIL+AM GL + K + K
Sbjct: 2 PNVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSK 61
Query: 142 CARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTEC 201
CA VVGEVL K+HPHGD AVYD+LVR+AQDF++RYPLI G GNFGSID DP AA RYTE
Sbjct: 62 CAGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEA 121
Query: 202 RLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPP 261
RL ++E LL DID++TV F PNFD + +EP +LPAR+P LL+NG+SGIAVGMATNIPP
Sbjct: 122 RLTKIAEE-LLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPP 180
Query: 262 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321
HNL E+VD L L+ NP+ +++ELLE++ GPDFPTGG I G GI D Y TGRG I +R
Sbjct: 181 HNLNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRA 240
Query: 322 KTEVELL----------------DSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLD 365
K ++E + K+ + +II EIPYQ NK+ L+EKIAELV K ++
Sbjct: 241 KVKIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIE 300
Query: 366 GISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGL 425
GI++IRDES+R G+R+V+ELK+G P +V+N+LY+ T ++++F ++ I+DGQP+ + L
Sbjct: 301 GITEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNL 360
Query: 426 KEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS 485
KE L FL R VV +R F L + + + HI+ G+ + ++NLD VI I+R++ + A
Sbjct: 361 KEALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAK 420
Query: 486 AALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQL 545
L + F L+E QA AILDM L+RLT LER+K + + +T++++I +L+ +L S + + +
Sbjct: 421 MKLMNRFPLTEIQAQAILDMRLQRLTGLEREKIIQDYETILKEIERLKAILESEELVRNI 480
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
I+ E+IE+K ++ R + + ++ +++ D+I ++M++ ++ GY+KR + + Q
Sbjct: 481 IKDELIEIKQKYGDERKTEIV-TETKEINIEDLITQEDMVITLTHLGYIKRTSLSDYRSQ 539
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
RG G + + +D + ++ HDH+++FS+ G VY + Y+IPE R + G +V
Sbjct: 540 KRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGRVYCLKVYQIPEAGRVSKGKAIV 599
Query: 666 QILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGD 725
+L L +GE+IT+ + + + +L+M T G++KK SL F +IR G+IAI L GD
Sbjct: 600 NLLPLQEGEKITTALVCKDIE-EGYLMMFTKKGFVKKTSLEEFKNIRQKGVIAIDLEEGD 658
Query: 726 ELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIP 784
EL VR T ++ + +A++ GM + S +R + R RG + +R + D++ S D++
Sbjct: 659 ELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDEVVSADVV- 717
Query: 785 AALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844
S G ++L ++E G GK+ P+ +R G+ K S
Sbjct: 718 --------------------SEGSFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSL 757
Query: 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
+ V + ED E +++ S + R+KV I Q R GV L ++LS
Sbjct: 758 K---TGNVVSSLQVKEDDE-----IIICSSSKMIRLKVSQIRPQGRATTGVRL--IDLSA 807
Query: 905 KIQSASLISVTEPETDLFL 923
S+ + E E D+ L
Sbjct: 808 DDTVVSMGRILEGEDDVNL 826
>gi|148266453|ref|YP_001245396.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
gi|150392486|ref|YP_001315161.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH1]
gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
gi|384863402|ref|YP_005748761.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387149194|ref|YP_005740758.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
gi|415693123|ref|ZP_11454977.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
gi|417652110|ref|ZP_12301866.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
gi|418425905|ref|ZP_12998982.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS1]
gi|418428782|ref|ZP_13001762.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS2]
gi|418431670|ref|ZP_13004560.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS3a]
gi|418438337|ref|ZP_13010108.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS5]
gi|418441286|ref|ZP_13012959.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS6]
gi|418441567|ref|ZP_13013194.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS7]
gi|418447233|ref|ZP_13018690.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS8]
gi|418450331|ref|ZP_13021699.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS9]
gi|418640051|ref|ZP_13202287.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-3]
gi|418876921|ref|ZP_13431163.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1165]
gi|418879713|ref|ZP_13433936.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1213]
gi|418882674|ref|ZP_13436878.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1769]
gi|418893492|ref|ZP_13447597.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1057]
gi|418918780|ref|ZP_13472729.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC348]
gi|418930157|ref|ZP_13484009.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1750]
gi|418989923|ref|ZP_13537587.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1096]
gi|419783712|ref|ZP_14309495.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-M]
gi|424769521|ref|ZP_18196747.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CM05]
gi|448744201|ref|ZP_21726101.1| DNA gyrase subunit A [Staphylococcus aureus KT/Y21]
gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
gi|375015451|gb|EHS09106.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-3]
gi|377699238|gb|EHT23585.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1165]
gi|377701339|gb|EHT25672.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1057]
gi|377718583|gb|EHT42755.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719157|gb|EHT43328.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1750]
gi|377726374|gb|EHT50486.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1096]
gi|377734874|gb|EHT58911.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIG1213]
gi|377769066|gb|EHT92844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CIGC348]
gi|383364800|gb|EID42106.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-M]
gi|387714927|gb|EIK03038.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS1]
gi|387715096|gb|EIK03202.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS3a]
gi|387715281|gb|EIK03384.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS2]
gi|387724429|gb|EIK12086.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS5]
gi|387726670|gb|EIK14218.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS6]
gi|387732609|gb|EIK19824.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS8]
gi|387733966|gb|EIK21124.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS9]
gi|387740838|gb|EIK27761.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS7]
gi|402348166|gb|EJU83161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CM05]
gi|408422577|emb|CCJ09988.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408424565|emb|CCJ11952.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408426554|emb|CCJ13917.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408428542|emb|CCJ25707.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408430531|emb|CCJ17846.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408432524|emb|CCJ19809.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408434513|emb|CCJ21773.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|408436498|emb|CCJ23741.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus ST228]
gi|445562478|gb|ELY18649.1| DNA gyrase subunit A [Staphylococcus aureus KT/Y21]
Length = 889
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|420504340|ref|ZP_15002867.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-62]
gi|393154752|gb|EJC55033.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-62]
Length = 828
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LD +D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDKIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEIKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|420477555|ref|ZP_14976210.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-23]
gi|393092234|gb|EJB92855.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-23]
Length = 828
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|444378763|ref|ZP_21177953.1| DNA gyrase subunit A [Enterovibrio sp. AK16]
gi|443677105|gb|ELT83796.1| DNA gyrase subunit A [Enterovibrio sp. AK16]
Length = 877
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/884 (41%), Positives = 549/884 (62%), Gaps = 69/884 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P ++P R+P LL+NGASGIAVGMATN
Sbjct: 123 TEVRMAKIAHE-LLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I N + T++EL+ ++PGPDFPT +I G GI DAYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K ++E+ K+ + +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 LRSKADIEV--EKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +++N+LY T LQ+SF NMV + + QP+ GLK++L+ F++ R
Sbjct: 300 MRIVIECKRDAVGEVILNNLYAQTQLQTSFGINMVALDNNQPRLFGLKDMLKCFVNHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK--------- 489
VV RR F+L + ++R HI+EG+ + L N+D +I ++R A + + A L+
Sbjct: 360 VVTRRTIFELRKARDRAHILEGLAIALANIDEIIEMIRNAQTPAIAREELQNRGWELGTV 419
Query: 490 ------------------DEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
DEF L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLEATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKE 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ I +L +LSS + ++++I +E+ +++ F R + + A S +D D+I +++
Sbjct: 480 LLALIGELMFILSSPERLMEVITEELTAVRDGFGDERRTEITAA-SADIDIEDLINQEDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 539 VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDYIERLLVANTHDTILCFSSRGRM 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L ERIT+I+PV E+ D+F+ M T +G +KK
Sbjct: 599 YWLKVYQLPLASRTARGKPIVNLLPLEQDERITAILPVKEYEEDKFVFMATGDGTVKKTP 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L D L V T D+ + + S++G V+ + +R + R
Sbjct: 659 LTDFSRPRSAGIIAVNLRENDSLIGVDITTGDNDIMLFSKSGKVVRFNEGQVRGMGRTAA 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L +GDK+ S+ I+P H D + +L V+E+G+GKR L
Sbjct: 719 GVRGIKLAEGDKVVSL-IVP---HNDGD-----------------VLTVTENGYGKRTEL 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G++ K S + VVG E G ++ ++++ +GT+ R +V +
Sbjct: 758 VEYPAKSRATQGVVSIKVSERNGC----VVGAVQVETG---DEFMMITNAGTLVRTRVAE 810
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSD 928
+S R +GV L+R K+ L + EP+ +L LP D
Sbjct: 811 VSQVGRNTQGVTLIRTSEDEKV--VGLQRIDEPDEEL-LPLDED 851
>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 882
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/897 (40%), Positives = 551/897 (61%), Gaps = 67/897 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + T++ L++++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K EVE D KS R +I+ EIPYQ NK+ L+EKIAELV+ K L+GIS +RDESD+ G
Sbjct: 242 IRAKAEVEA-DEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N LY LT +Q +F NMV + GQPK + LK+ LQAF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI L +L S ++++I +E+I ++++F R + + + ++ ++ D+I +++
Sbjct: 481 LLEQIAALIFILESPDRLMEVIREELIAVRDQFGDARRTEITE-NTADINIEDLISQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P++ +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRHVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S G V+ +RS+ R
Sbjct: 660 LTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L D++ S+ IIP +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLNGEDRVVSL-IIP------------------RGEGD--ILTVTENGYGKRTGV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K S + VVG A ++ +Q+++++ +GT+ R +V +
Sbjct: 759 AEYPTKSRATQGVISIKVSERNG----NVVG---AVQVDACDQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLATESGVSEMLQ 941
+S+ R +GV L+R + L V EPE D + + A E V+++ +
Sbjct: 812 VSVVGRNTQGVTLIRTAEDEHV--VGLQRVAEPEEDDEVLDGEEGAAVEGDVADVAE 866
>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|38604966|sp|Q932M0.1|GYRA_STAAM RecName: Full=DNA gyrase subunit A
gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
Length = 889
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|420422045|ref|ZP_14921123.1| DNA gyrase, A subunit [Helicobacter pylori NQ4110]
gi|393038563|gb|EJB39597.1| DNA gyrase, A subunit [Helicobacter pylori NQ4110]
Length = 827
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 540/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN++ ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNINEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND-D 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVGAKVVDNNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I +D
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVI-----------NDD 710
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
S+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 SNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
Length = 855
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/850 (40%), Positives = 535/850 (62%), Gaps = 41/850 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN+ ++ ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL K
Sbjct: 3 PNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ +S RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI+++TV+FVPNFDE+++EP +LP+R P LL NG SGIAVGMAT
Sbjct: 123 YTEARLSRISMEML-ADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL EL+ + +I N + +++EL+E + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR T++E + + R +I+ EIPY NK+ L+EKIAELV++K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVTDIETMPNGKSR--IIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMRI IEL+R + +IV+N L + T LQ +F NM+ +++ +PK + L ++L +
Sbjct: 300 ESNREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
LD + VV RR ++ L++ +ER HI+EG++ LD +D VIRI+R + + + A A L + F
Sbjct: 360 LDHQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
+LS+ QA AI+DM LR LT LER+K ++E + L ++I +L +L+ +L +I++E+
Sbjct: 420 ELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQL 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP++++++AI+ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDDRRTKI-GYDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + + ++ H ++++F++ G VY +AY+IPE R A GT +V ++ L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+IT+ +P+ EF D+FL M T NG +K+ + + ++R G+ AI L DEL V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + + ++ GM I +R R + G + M+ D++ M +
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSDDEIIGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VSE G GKR P+ F G+ Y+ + +
Sbjct: 709 -------------ASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEK----T 751
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
++VG L ++G Q++L++ G + +++V ISI R GV LM ++ + AS
Sbjct: 752 GYLVGAKLVDEG---RQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVAS 808
Query: 911 LISVTEPETD 920
+ V E D
Sbjct: 809 IAKVRESSQD 818
>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
gi|376280769|ref|YP_005154775.1| DNA gyrase subunit A [Brucella suis VBI22]
gi|384224763|ref|YP_005615927.1| DNA gyrase subunit A [Brucella suis 1330]
gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
gi|343382943|gb|AEM18435.1| DNA gyrase subunit A [Brucella suis 1330]
gi|358258368|gb|AEU06103.1| DNA gyrase subunit A [Brucella suis VBI22]
Length = 922
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/898 (41%), Positives = 536/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 132 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 191 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 251 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 309 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 369 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 428
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 429 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 488
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 489 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 547
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 548 PLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTP 607
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E F + ++ T G +++ L+ F +
Sbjct: 608 QSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRN 667
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G + L
Sbjct: 668 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLA 727
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 728 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 787
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 788 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 845
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + K+ S IS
Sbjct: 846 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERIS 896
>gi|392970923|ref|ZP_10336321.1| DNA gyrase subunit A [Staphylococcus equorum subsp. equorum Mu2]
gi|392510925|emb|CCI59580.1| DNA gyrase subunit A [Staphylococcus equorum subsp. equorum Mu2]
Length = 901
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/833 (40%), Positives = 540/833 (64%), Gaps = 31/833 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ +HE G++ K +KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPLI G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML D++++T++F+ N+D +++EPS+LP+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKITLEML-RDLNKNTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +L HNP+ T+ EL+E + GPDFPTG LI+G GI A+ TGRG + +R +
Sbjct: 187 NLTEVINGVLSLSHNPDITISELMEDVQGPDFPTGALILGKSGIRRAFETGRGSVIMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+PYQ NK+ ++EKIAEL +K ++GI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+V+N+LY+ T LQ+SF NM+ +++G+P+ + LKE L +LD + VV
Sbjct: 305 VIDVRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPRLITLKEALVEYLDHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + +R HI+EG+ + LD++D +IR++RE+ ++ A A+L+++FKL+E+QA A
Sbjct: 365 RRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +L+ +L+ + +LQ++ E+I++++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNDLIAYIEELKAILADEEKLLQIVRDELIDVRDRFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ Q+RG G D
Sbjct: 485 KTEIQLGGLDNIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDSDESISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T+ G +K+ +L+ FS I G IAI DEL VR + +
Sbjct: 605 VKDLESEEDYLVFATLKGRVKRSALSNFSRINRNGKIAINFKDDDELIAVRLTDGETDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GDK+ +D+
Sbjct: 665 IGTAHASLIRFHEAALRPLGRTAAGVKGITLREGDKVVGLDV------------------ 706
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
K +L V+E+G+GKR P+ +R L+ G G K + V S+
Sbjct: 707 -TKAEQDDEILVVTENGYGKRTPVGDYR---LSNRGGKGIKTATITERNGNIVCITSVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
GE D +++V+ SG + RI V DIS R A+GV L++L+ + + + ++++
Sbjct: 762 -GEED--LMVVTNSGVIIRIDVNDISQNGRAAQGVRLIKLDDNQFVSTVAIVN 811
>gi|386829731|ref|YP_006236385.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|418657146|ref|ZP_13218923.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-105]
gi|375031322|gb|EHS24604.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-105]
gi|385195123|emb|CCG14723.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus HO 5096
0412]
Length = 889
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|406986414|gb|EKE07011.1| hypothetical protein ACD_18C00213G0002 [uncultured bacterium]
Length = 835
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/830 (43%), Positives = 517/830 (62%), Gaps = 31/830 (3%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
+ +I P+ L +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM +GL F
Sbjct: 23 IVEKIEPINLVQEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMWGIGLRHNSKF 82
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK A VVGEV+ K+HPHGD+A+YDSLVRMAQDF++R L+ G GNFGS+D D AAAMRYT
Sbjct: 83 KKSAHVVGEVMAKYHPHGDSAIYDSLVRMAQDFNMREMLVNGQGNFGSMDGDSAAAMRYT 142
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E +L ++E M+ DID++TV+FVP +D S +EP +LPA++P LLLNG+ GIAVGMATNI
Sbjct: 143 EAKLRLVAEEMIY-DIDKNTVDFVPTYDGSYREPVVLPAKVPNLLLNGSMGIAVGMATNI 201
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNL EL D + ALI N + +++EL EY+ GPDFPTGG+I I AY TGRG I +
Sbjct: 202 PPHNLSELCDGITALIENSKVSIEELTEYIKGPDFPTGGIIYNKKDIAAAYATGRGGILM 261
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R KT+++ D K + +II E+PYQ NK+ L+EKIA LV+ K L+GI D+RDES++ G+
Sbjct: 262 RAKTDIQETDKGDKTV-IIITEVPYQVNKARLIEKIATLVQEKKLEGIRDLRDESNKDGV 320
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-QPKQMGLKEVLQAFLDFRCS 438
RIVIELK+ + P V+N LY+LT LQ++F NM+ ++DG QP+ + LK +L+ +L R
Sbjct: 321 RIVIELKKDSYPKKVLNKLYKLTDLQTTFHVNMLALIDGIQPRVLNLKTILEEYLKHRQE 380
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR +F+L + ER HI+EG+ LD +D +I ++R++ A +L D+FK SE+Q
Sbjct: 381 VIRRRTKFELDKALERAHILEGLKKALDKIDLIIALIRKSKDKEEAKVSLMDKFKFSERQ 440
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
AIL+M L++L LERKK DE K + I LEELL S K IL LI+ EV+E+KN +
Sbjct: 441 TVAILEMKLQQLANLERKKIEDELKEKQKIIADLEELLKSEKKILALIKAEVLEIKNNYG 500
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL- 617
R + + + + D++PN+ L+ + GY+KR+ P+TF Q+RG GK V L
Sbjct: 501 NERRTQIIAHGVKEFNMEDLVPNEPTLIISTRDGYIKRLPPDTFKQQSRG--GKGVIGLT 558
Query: 618 -RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
+ D + I HD++L+F+ RG V+ AY IP+ TR A G L L L+ E++
Sbjct: 559 TKEEDVVDKIISTNTHDNILFFTTRGRVFQLSAYDIPQTTRTAKGQALQNFLQLAPNEKV 618
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736
+ + + + LVM+T G IKK L F ++R +G+IA++L D L+WV+ +
Sbjct: 619 SVFLSMDNLGSYESLVMVTSKGNIKKTKLEDFKNVRKSGLIALKLKEDDMLEWVQPTAGN 678
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL--HKDLERT 794
+ + + + G I +R++ R G A++LK D++ M I+ +L K LE
Sbjct: 679 NDIMITTSMGQSIRFKEKDVRAMGRTASGVRAIKLKSTDEVVGMSILDNSLVKMKVLE-- 736
Query: 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVV 854
LL VSE+G GK+ ++ ++ + G G K A +
Sbjct: 737 ---------------LLVVSENGMGKKTKINEYK---VQGRGGSGIKTMAVTSKTGKIIS 778
Query: 855 GFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSG 904
+ E D ++++S G V R ++ IS R +GV +MR + G
Sbjct: 779 SQVVNTTEEKD--IMIISVKGQVIRTSLKSISTLGRATQGVRIMRFKAEG 826
>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376276289|ref|YP_005116728.1| type IIA topoisomerase subunit A [Brucella canis HSK A52141]
gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363404856|gb|AEW15151.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
subunit [Brucella canis HSK A52141]
Length = 922
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/898 (41%), Positives = 536/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 132 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 191 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 251 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 309 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 369 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 428
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 429 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 488
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 489 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 547
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 548 PLTTYRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTP 607
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E F + ++ T G +++ L+ F +
Sbjct: 608 QSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRN 667
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G + L
Sbjct: 668 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLA 727
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 728 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 787
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 788 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 845
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + K+ S IS
Sbjct: 846 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERIS 896
>gi|420430495|ref|ZP_14929523.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-20]
gi|393047192|gb|EJB48167.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-20]
Length = 828
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 539/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KAKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG + LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYSIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDEKLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|420413703|ref|ZP_14912826.1| DNA gyrase, A subunit [Helicobacter pylori NQ4099]
gi|393028232|gb|EJB29319.1| DNA gyrase, A subunit [Helicobacter pylori NQ4099]
Length = 831
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/830 (43%), Positives = 541/830 (65%), Gaps = 32/830 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVY++LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYNALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQES-YENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L+ E+I + + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVS 657
Query: 730 VRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ N + +AS G+ I + +R + R TRG + +RL + D + +I +
Sbjct: 658 AKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDDN 717
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
K LL VSE+G GK+ ++R+ G+IG K + +
Sbjct: 718 K--------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK--- 754
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 755 -TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 801
>gi|335042503|ref|ZP_08535530.1| type IIA topoisomerase , A subunit [Methylophaga aminisulfidivorans
MP]
gi|333789117|gb|EGL54999.1| type IIA topoisomerase , A subunit [Methylophaga aminisulfidivorans
MP]
Length = 863
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/848 (41%), Positives = 529/848 (62%), Gaps = 65/848 (7%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + EM SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM ELG S P+KK AR+V
Sbjct: 11 IGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSARIV 70
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD++VRMAQ FS+RY L+ G GNFGS+D DP AAMRYTE R+ +
Sbjct: 71 GDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDPPAAMRYTEVRMAKI 130
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ ML AD++++TV+FVPN+DES+ EP++LP ++P LL+NG+SGIAVGMATNIPPHNL E
Sbjct: 131 AHEML-ADLEKETVDFVPNYDESESEPAVLPTKIPALLVNGSSGIAVGMATNIPPHNLTE 189
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
+++ A+I NP+ T EL+EY+PGPDFPT G+I G GI +AY+TGRGR+ +R + ++E
Sbjct: 190 ILNACIAIIDNPDVTTHELMEYVPGPDFPTSGIINGARGIAEAYQTGRGRVHIRARADIE 249
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ + + +++KE+PYQ NK+ L+EKIAELV++K ++GIS +RDESD+ GMR+VI LK
Sbjct: 250 T-NEATGQQSIVVKELPYQVNKARLLEKIAELVKDKKIEGISALRDESDKDGMRMVIVLK 308
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
RG P +V+N+LY+ T +Q+ F NMV I+DGQP+ + LKE+L AF+ R VV RR+ +
Sbjct: 309 RGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKEILDAFIRHRREVVTRRSIY 368
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------------------ 488
L + +ER H++EG+ L N+D VI +++ +P+ + A AL
Sbjct: 369 DLRKARERAHVLEGLATALANIDEVIELIKASPNPAEAKEALVSKGWASGMILEMLGAAG 428
Query: 489 ---------KDEFKL-------SEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
DEF L S QA AILDM L RLT LE+ K + E + +++ I +L
Sbjct: 429 AAASRPEDLADEFGLVDNLYYLSPVQAQAILDMRLHRLTGLEQDKILQEYREVLDVIAEL 488
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
+LS N++ +I +E++ + + R + + A+ L D+I +EM++ +S G
Sbjct: 489 LAILSDPDNLMAVIREELVAINAEYGDERRTEIL-ANHLDLTLEDLITEEEMVVTLSHAG 547
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
Y K + +T+ Q RG GK+ ++ D + + HD +L FS G VY + Y++
Sbjct: 548 YAKTQQLDTYQAQKRGGKGKAATAMKDEDFIEHLFIANTHDTLLCFSSAGKVYWKKVYEL 607
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR 712
P+ +R + G P++ +L L +GE+I +++P+ EF D+F+ M T +G +KK L +S R
Sbjct: 608 PQGSRASRGKPIINLLPLEEGEKINAVLPIREFEADKFIFMATASGTVKKTPLVDYSRPR 667
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
GIIA+ L GD+L V V + S G VI + +RS+ R +RG MR+
Sbjct: 668 ANGIIAVDLKEGDQLIDVAVTDGHSDVMLFSNTGKVIRFAETDVRSMGRVSRGVRGMRIA 727
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
+ +K+ S+ I + +G+ +L +E G+GKR L+ +R
Sbjct: 728 EDEKIISLII-----------------AEEEGA----ILTATEFGYGKRTNLAEYRVQGR 766
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
G+I + SA + VVG D + Q++L++ GT+ R V+D+S+ R
Sbjct: 767 GGQGIISIQTSARNG----NVVGAVQVCD---ENQIMLITNGGTLVRTPVKDVSLVGRNT 819
Query: 893 RGVILMRL 900
+GV L+ L
Sbjct: 820 QGVRLINL 827
>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
Length = 894
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 544/881 (61%), Gaps = 93/881 (10%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEA--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDEL-------------------KWVRCCTNDDLVAMASQN 745
L+ F+++R G+IA+ L D L K VR +++ A+ +N
Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEE-TAVVDEN 717
Query: 746 GMVILSSCDI-------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
G +L +R + R G M+L DGD++ S+ I+P A
Sbjct: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKA------------ 764
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+G +L V+E+G+GKR LS + G++ K S + VVG
Sbjct: 765 ----EGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG----SVVGAVQ 812
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+G+ + ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 813 VAEGD---EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TT 714
R AAG V+ + L+DG+++ S+I V + GD ++ +T NGY K+ SL+ + + T
Sbjct: 740 RTAAG---VRGMKLADGDQVVSLI-VPKAEGD--VLTVTENGYGKRTSLSEYPTKGRGTQ 793
Query: 715 GIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+++I++ G + V+ D+ + M + G ++ + + + RNT+G +R
Sbjct: 794 GVVSIKVSERNGSVVGAVQVAEGDEFM-MITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
Query: 773 DGDKMASMDII 783
+G+ + + I
Sbjct: 853 EGESVVGLQRI 863
>gi|420472284|ref|ZP_14970977.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-18]
gi|393089101|gb|EJB89742.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-18]
Length = 828
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/822 (42%), Positives = 537/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKIA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DI++DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDINKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+ GRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKMGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ F++ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFINHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSLSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLTPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
Length = 823
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/832 (42%), Positives = 532/832 (63%), Gaps = 33/832 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV++ +EM +YI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK A
Sbjct: 11 IHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSA 70
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RY L+ GHGNFGSID D AAAMRYTE R+
Sbjct: 71 RIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRM 130
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML ADID++TV+F+PN+DES +EP++LPA++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 131 AKITTEML-ADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + L LI NP+ T+ EL+ + GPDFPTG LI+G GI AY TGRG + +R +
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARA 249
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + SK K +++ EIPYQ NK+ ++E IA L +K +DGI+ +RDESDR GMRIVI
Sbjct: 250 TIEEM-SKGKHK-IVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
EL+ P IV+N LY+ T LQ +F M+ ++DG P+ + LKEVL +LD R V+ RR
Sbjct: 308 ELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F+L++ + R HI+EG+++ LD++D VI +R + ++ A AL +F LSEKQA AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER+K +E K L+ I L+ +L+S Q+I+ E+ ++K ++ PR S
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDPRRS 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D+ LD D+I ++EM++ ++++GY+KRM N + Q++G G K + +D +
Sbjct: 488 EIT-IDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYV 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIPV 682
+ + R H+ +L+F+ G Y +AY++PE +RN+ GT +V +L L+ GE +T++I +
Sbjct: 547 TQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL 606
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
D L M+T G +K+ ++ + +IR +G+ AI L GD L V T + + +
Sbjct: 607 ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIG 666
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G+ I S +R + R G ++L GD + L+ D
Sbjct: 667 TKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVG----AGVLNND------------ 710
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
S + +SE G GKR ++ L + G G K F ++ V V E
Sbjct: 711 --ESEAQVFTISEEGFGKRNDAEAY---TLQKRGGKGSKNFKITNKTGDVVAV-----EV 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISI-QARYARGVILMRLELSGKIQSASLI 912
+D++V+L+S+ G + R + DI++ + + GV L+ K+ S ++I
Sbjct: 761 VHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVI 812
>gi|409349172|ref|ZP_11232702.1| DNA gyrase, A subunit [Lactobacillus equicursoris CIP 110162]
gi|407878360|emb|CCK84760.1| DNA gyrase, A subunit [Lactobacillus equicursoris CIP 110162]
Length = 838
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/839 (41%), Positives = 534/839 (63%), Gaps = 35/839 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V+L + M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 9 RIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y S+ MAQDF+ RY L+ GHGNFGS+D D AAMRYTE R
Sbjct: 69 ARIVGDVMGKYHPHGDSSIYLSMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++T+++ N+D+++ EP++LPAR+P LL+NG+SGIAVGM TNIPPH
Sbjct: 129 MSRIAVEML-RDINKNTIDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGMTTNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ + L+ +P+ T +EL++ +PGPDFPTGG++MG G+L AY TG+G I VR K
Sbjct: 188 NLTEVISGIHMLMKDPDVTTRELMKAIPGPDFPTGGILMGRSGVLHAYETGKGNIVVRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E KS R +++ EIPY NK+ LV+KIAEL +K +DGI+ IRDESD+SGMRI
Sbjct: 248 TEIET--EKSGRERIVVTEIPYLVNKAELVQKIAELARDKVIDGITGIRDESDQSGMRIT 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+V+N+L++ T +QS+F+ NMV I+DG PK + LKE+LQ +L + V+ R
Sbjct: 306 IDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKEMLQHYLAHQEDVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + + R HI+EG+ + LD++D ++ ++R + S+ A A L FKL ++QA AI
Sbjct: 366 RTKFDLDKAEARAHILEGLRIALDHIDEIVNLIRNSESSDIAKAGLISRFKLDDRQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E + L+ +I +++L+ + I Q+I E+++++ RF R
Sbjct: 426 LDMRLVRLTGLERDKVEAEYQDLLVKIADYKDILAKPERIDQIIYDELLDIQKRFGDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ L+D D+I ++LL ++ +GY+KRM + F QNRG G ++ D
Sbjct: 486 TQITASEVVTLEDEDLIEEQKVLLTLTHQGYIKRMLIDDFKTQNRGGRGIKGMGVQKGDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI--I 680
+ + HD++L+F+++G VY +AY+IPE RNA G P+V +L L GE I ++ +
Sbjct: 546 IEHLLYSSTHDYLLFFTNKGKVYMKKAYEIPEFGRNAKGLPIVNLLQLEKGEHIQTMVNV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P S+ D + +T G +KK L+ F +IRT G+IA+ L GDEL V +
Sbjct: 606 PKSDNDEDGYAFFITKLGTVKKTKLSEFENIRTNGLIALTLKDGDELSNVLATDGSQNIF 665
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+A+ G + + +RS+ R+ G + L+DGD + ++ A ED
Sbjct: 666 IATHQGYAVTFNEKDVRSMGRSAAGVRGINLRDGDYVVGSGVLKA----------EDE-- 713
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
+L +SE G+GKR P + + G+ K ++ LA V VV
Sbjct: 714 ---------VLTISEKGYGKRTPATEYPVKGRGGKGIQTAKIGQKNGPLAGVAVV----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
DG+SD ++L++ G + R K D+S R GV L++++ + S +++ E +
Sbjct: 760 -DGKSD--IMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVDEGNSVASLAVVPAEEED 815
>gi|355572976|ref|ZP_09043944.1| DNA gyrase, A subunit [Methanolinea tarda NOBI-1]
gi|354823988|gb|EHF08247.1| DNA gyrase, A subunit [Methanolinea tarda NOBI-1]
Length = 818
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/837 (42%), Positives = 526/837 (62%), Gaps = 35/837 (4%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
A G + +++PV + EEM SYI Y+MSV++GRA+PDVRDGLKPVHRR LF+M
Sbjct: 5 QAGTAGAGQEPASQVIPVNIEEEMKTSYINYAMSVIIGRAIPDVRDGLKPVHRRSLFSMW 64
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
E+G + KP +K ARVVG+V+GK+HPHGD A+YD++V+MAQ F+ RYPLI G GNFGSID
Sbjct: 65 EMGNTHDKPTRKSARVVGDVMGKYHPHGDAAIYDTIVKMAQPFTYRYPLIEGQGNFGSID 124
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAMRYTE RL+ L+E LL DI+++TV FVPNFDES EP +LPA++P LLLNG+S
Sbjct: 125 GDAPAAMRYTEVRLDPLAEE-LLHDIEKETVAFVPNFDESLNEPVVLPAKVPNLLLNGSS 183
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMATN+PPHNL E+ + L + P+A L+ ++++PGPDFPTGG+IMG GI A
Sbjct: 184 GIAVGMATNMPPHNLREVCNALVQYLDTPDAPLEVFMQHLPGPDFPTGGVIMGTEGIKSA 243
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y TG+G++ +RG E+E S+ +R ++I EIP+Q NK+ L+E IA LV+ K ++GISD
Sbjct: 244 YLTGQGKVIIRGVAEIEDRGSRGER--IVITEIPFQVNKARLIETIANLVKEKKIEGISD 301
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
IRDESD+ G+R+VI+LK+GA +I++N LY+ TAL+S+F + I++ QP+ + L +
Sbjct: 302 IRDESDKEGLRVVIDLKKGASGAIILNQLYKHTALESTFGIINLAIVENQPRILSLTGLF 361
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ F+ R V+ RR+ + + +ER HI+EG+++ L +D VI +R + + A L
Sbjct: 362 REFVAHRIEVIRRRSEYDRRKAQERAHILEGLLLALSRIDEVIAAIRASETADVAKETLI 421
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
F L E QA AIL M LRRL LE+KK DE L+++I +L E+L+ KNI + I +E
Sbjct: 422 TRFGLDEPQAAAILQMQLRRLAALEQKKIQDEKDELLKEIARLTEILADEKNIRREIRKE 481
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++ + ++ R + + A++ QLD D+I + ++L++++ Y+KRM +T+ Q RG
Sbjct: 482 LVAIAEKYGDDRRTRI-SAEATQLDREDLIEDKQVLVSLTSLNYIKRMDLDTYRQQRRGG 540
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
G + D ++D V HD++L F+ G Y + Y IPE +R + G +V +L+
Sbjct: 541 RGIIGMSTKEEDYVTDVFVANTHDYLLCFTTTGRAYWLKVYDIPEGSRTSRGKAIVNLLN 600
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L D E++T++IPV EF+ D+FL T G + KV L FS R+TGIIA+ L GDEL
Sbjct: 601 L-DNEKVTAVIPVREFSRDRFLFFATRKGMVLKVPLEEFSRPRSTGIIAMNLREGDELVD 659
Query: 730 VRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHK 789
V+ V + ++ G + S + R G + +R++ D + ++ ++
Sbjct: 660 VKITDGKREVILTTRKGQSLRFSESSVTEHHRGAMGVIGIRMRGNDDLRAVSLV------ 713
Query: 790 DLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLA 849
E H LL V+E+G+GKR + F + G +G + +
Sbjct: 714 ------EKDH----------LLTVTENGYGKRTDFAEFHG---HGRGTMGVR-----NIL 749
Query: 850 AVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
F G A+ +++++L+S SG V R KV +ISIQ R RGV +M++E ++
Sbjct: 750 TEFRGGVVDAKAVSENDEIILMSASGIVIRTKVSEISIQKRSTRGVRIMKMEEGDRV 806
>gi|374331561|ref|YP_005081745.1| DNA gyrase subunit A [Pseudovibrio sp. FO-BEG1]
gi|359344349|gb|AEV37723.1| DNA gyrase, subunit A [Pseudovibrio sp. FO-BEG1]
Length = 905
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/876 (43%), Positives = 527/876 (60%), Gaps = 67/876 (7%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M SY+ Y+MSV++ RALPDVRDGLKPVHRRIL++MHE G KP++K ARVVG+V+GK
Sbjct: 1 MKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSARVVGDVMGK 60
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD+A+YD+LVRMAQDFS+R PLI G GNFGSID D AAAMRYTECRLE ++ L
Sbjct: 61 YHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGSIDGDRAAAMRYTECRLEKVAHTQL- 119
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
+DID+DTVNF N+D S++EP +LPAR P LL+NGA GIAVGMATNIPPHN+GE++D
Sbjct: 120 SDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGAGGIAVGMATNIPPHNMGEVIDGTI 179
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
A+I PE TL EL+E +PGPDFPTGG+I+G GI AY GRG + +R K + E + ++
Sbjct: 180 AMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKAAYENGRGSVIMRSKVDTEEI--RA 237
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
RM +I+ EIPYQ NKS ++EKIAELV K ++GISDIRDESDR GMR+VIELK+ A P
Sbjct: 238 GRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDIRDESDRQGMRVVIELKKDAVPD 297
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
++VN LYR + LQ SF CNMV + G+P+Q+ LK++L+AF+ FR VV RR RF L++ +
Sbjct: 298 VIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLKAFIAFREEVVGRRTRFLLAKAR 357
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE--------------------- 491
+R H++ G+ V N+D VI ++R AP +TA L +
Sbjct: 358 DRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLMERNWPAKDIEPLIQLIDDPRYAI 417
Query: 492 -----FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLI 546
FKLSE QA AILD+ L+RLT L R + DE L +I ++L SR+ IL+++
Sbjct: 418 QEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDKLAAEIKDYLDILKSRERILEIV 477
Query: 547 EQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQN 606
E+ E+++ F+TPR + + D LDD D+I ++M++ +S GY+KR+ +T+ Q
Sbjct: 478 RTELEEVRDEFATPRRTEITDGGG-DLDDEDLIQREDMVVTVSHSGYIKRVPLDTYRAQR 536
Query: 607 RGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQ 666
RG G+S + + D ++ V H VL+FS RGI Y + +++P A G LV
Sbjct: 537 RGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAYKMKVWRLPLAGPQARGNALVN 596
Query: 667 ILSLSDGERITSIIPV---SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723
+L L GERITSI+P+ E + ++ T G I++ L+ F+ I G IA++L
Sbjct: 597 MLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRRNKLSDFAQINKNGKIAMKLEE 656
Query: 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLKDGDKMASMDI 782
GD + V T DD V + + GM I +R S RN+ G + L +GD + SM I
Sbjct: 657 GDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVGVRGINLAEGDHVISMTI 716
Query: 783 IPAALHKDLERTP----------EDSHSNVK--------------GSSGPWLLFVSESGH 818
+ ERT E+ +V + +L VSE+G+
Sbjct: 717 LRHFDCDSDERTAYLKLSRAMSGEEGAESVSFEDAGMTKERFEAMDENAEVILTVSENGY 776
Query: 819 GKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTV 877
GKR +R G+ + + RL A F ESDE ++LV+ G +
Sbjct: 777 GKRTSSYEYRTTGRGGKGIAAMTVNDRNGRLVASF-------RSEESDE-IMLVTNGGQL 828
Query: 878 NRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
R V I + R +GVI+ K+ + IS
Sbjct: 829 IRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERIS 864
>gi|417973448|ref|ZP_12614302.1| DNA gyrase subunit A [Lactobacillus ruminis ATCC 25644]
gi|346330259|gb|EGX98524.1| DNA gyrase subunit A [Lactobacillus ruminis ATCC 25644]
Length = 847
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/857 (41%), Positives = 535/857 (62%), Gaps = 41/857 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V+L + M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP+KK
Sbjct: 7 RISNVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DTV+F PN+DE+++EP +LP+R P LL+NGA+GIAVGM TNIPPH
Sbjct: 127 MSKIALEML-RDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ L L+ NP+AT EL+E +PGPDFPTG ++MG GI AY TG G +T+R K
Sbjct: 186 NLREVISGLHLLMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E + R +I+ EIPY NK+ L+ +IA+L K +DGI+DI DESDR GMRI
Sbjct: 246 VDIEEQSNGKSR--IIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRIT 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R PS+V+N+LY+LT +QSSF+ NM+ I+DG P+ +GLK++LQ +L + V+ R
Sbjct: 304 IDIRRDVSPSVVLNNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ + LD++D +I I+R + S A L +E++LS+KQA AI
Sbjct: 364 RTAFDLKKAQARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K +E I +++L+ + + +I QE++E++ +F R
Sbjct: 424 LDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSIIYQELLEIQEKFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + ++D D+I + +++A++ GY+KR+ + F Q RG G + +D
Sbjct: 484 TELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGGRGVQGMGVHDDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD VL+F++ G VY + Y++PE R A G P++ +L LS+GE+I ++I V
Sbjct: 544 IEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLDLSEGEKIQTVINV 603
Query: 683 S-EFAGD-QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
E D FL T+ G +K+ S+ F +IR G+ AI L GDEL V + +
Sbjct: 604 DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDELLNVSITDGNQNII 663
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + G + S + +R + R G +RL+D D D++ P+ S
Sbjct: 664 IGTHGGYAVSFSENAVRQMGRTASGVRGIRLRDDDYAVGSDVLK----------PD---S 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGF 856
NV +SE G+GK+ P S + P+ G G K S LA + +V
Sbjct: 711 NV--------FVISEKGYGKQTPASDY---PIKGRGGKGIKTSNITEKNGSLAGLTIV-- 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
DG D +++++ G + R V+ +S R GV L+ L+ K+ + + + +
Sbjct: 758 ----DGTED--IMVITDKGVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQ 811
Query: 917 PETDLFLPSTSDKLATE 933
PE D ++D+ +TE
Sbjct: 812 PEADDEKNLSNDENSTE 828
>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
Length = 887
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/821 (42%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ LDD D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y+ PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYERPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
Length = 934
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/898 (41%), Positives = 538/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 144 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 202
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 203 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 262
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 263 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 320
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 321 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 380
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 381 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 440
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 441 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 500
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 501 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 559
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V +H VL+FS RGIVY + +++P T
Sbjct: 560 PLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTP 619
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 620 QSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 679
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G ++L
Sbjct: 680 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLA 739
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 740 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 799
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 800 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 857
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + + K+ S IS
Sbjct: 858 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERIS 908
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV---CRAHDHVLYF 638
+E +L +SE GY KR F + RG G D + + D +L
Sbjct: 807 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 866
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
SD G + I R+ G V I +++DGE++ S+ +S+ D+
Sbjct: 867 SDGGQLIRVPVDGIRIAGRSTKG---VTIFNMADGEKVVSVERISDADSDE 914
>gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
Length = 811
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/838 (42%), Positives = 548/838 (65%), Gaps = 40/838 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+S R + EL E SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G+++ KP
Sbjct: 3 NISNRYIEEELKE----SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKP 58
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
FKK AR+VGEVLGK+HPHGD AVY+++VRMAQ+F+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 59 FKKSARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRY 118
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ A LL DID++T++F NFD+S EP++LP++LP LLLNG++GIAVGMATN
Sbjct: 119 TEARMSKIT-AELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATN 177
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGELVD LI NPE + EL+EY+ GPDFPTGG+I G GI DAY TGRG+I
Sbjct: 178 IPPHNLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIR 237
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VRGK ++E ++K+ + +II+EIPYQ NKS L+E+IA LV+ K + GI D+RDES+R G
Sbjct: 238 VRGKVKIE--ENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREG 295
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELK+G +P +V+N LY+ T LQS+F M+ +++ PK + LK++L ++ R
Sbjct: 296 IRVVIELKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQ 355
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI++G + L+N++R+I ++R + + A L +++ +E Q
Sbjct: 356 VITRRTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQ 415
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A +ILDM L+RLT LER+K E + L + I++L+++LS I +++QE++++K+ +
Sbjct: 416 AKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTYG 475
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E+ L + D+I ++EM++ + KGY+KR++ N + QNRG GK V L
Sbjct: 476 DKRRTHIEEERMEILPE-DLIKDEEMIITCTNKGYIKRIEANKYKSQNRG--GKGVTGLN 532
Query: 619 -VNDAMSDFIVCRAH-DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
++D + D I+ ++ D ++ F+D+G VY+ + Y++PE +R + G + +L + + E+I
Sbjct: 533 TIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKI 592
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TN 735
+II F ++ LV +T G +KK SL F +I T G+IAI+ D+L +V
Sbjct: 593 RAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAA 652
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
++ V +A++ G + D +R RNT G + L++GD +++ A L K+ E
Sbjct: 653 ENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGD-----EVVSALLIKEKEMD- 706
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+L ++E+G+GKR L + NR G D+ + V
Sbjct: 707 --------------ILTITENGYGKRTRLDEYP--SHNRGGKGVINLRCNDKTGNIVSVL 750
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+L E E++V ++ +G + R + IS +R A+GVI+M++ L K+ S + I
Sbjct: 751 TALDE-----EELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803
>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
Length = 922
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/900 (42%), Positives = 536/900 (59%), Gaps = 74/900 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E LLADID++TV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKVAEE-LLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI +P TL E++E +PGPDFPTGG+I+G G+ AY TGRG I +R K
Sbjct: 195 LGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EKIAELV +K ++GISD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A IV+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R AP TA L
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVAPLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I + +LS
Sbjct: 433 LIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITEYLHILS 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F TPR ++ ++ ++++ D+I ++M++ +S GY+KR+
Sbjct: 493 SRLRIMGIVKDELSTLREEFVTPRRTVFGFGNA-EMNNEDLIVPEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWRLPIGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G LV +L L +GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 612 QSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRNKLSDFIQVNRN 671
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKD 773
G IA++L DE+ V CT D V + + NG I D+ + RN+ G + + D
Sbjct: 672 GKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRNSVGVRGINMVD 731
Query: 774 GDKMASMDIIPAALHKDLERTPEDSHS-NVKGSSGP------------------------ 808
GDK+ SM I+ +ER+ + N + S+G
Sbjct: 732 GDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENEDGDETELTDERY 791
Query: 809 --------WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
LL VSE G+GKR FR G G A D V + A
Sbjct: 792 AELAAREQMLLTVSEFGYGKRSSSYEFRI-----SGRGGKGIRATDPNKTVEIGKLVAAF 846
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
E+ +Q++LVS G + R+ + I I R +GV + K+ S IS +PE D
Sbjct: 847 PVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS--DPEDD 904
>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
Length = 826
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/821 (43%), Positives = 535/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFILSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVISG------------ 709
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 710 --------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGII 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRKTSGVKLI 796
>gi|395784161|ref|ZP_10464000.1| DNA gyrase, A subunit [Bartonella melophagi K-2C]
gi|395423916|gb|EJF90104.1| DNA gyrase, A subunit [Bartonella melophagi K-2C]
Length = 927
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/911 (41%), Positives = 542/911 (59%), Gaps = 79/911 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGSID DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LL DID+DTV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKISEE-LLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD ALI +P TL E+++ +PGPDFPTGG+I+G GI AY TGRG I +R K
Sbjct: 195 LGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGCSGIRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EKIAELV +K +DG+SD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R+A A A L
Sbjct: 373 TKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAIDIAPLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I ++L+
Sbjct: 433 LIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F+TPR ++ ++ ++D D+I +EM++ +S GY+KR+
Sbjct: 493 SRSRIMSIVKDELNALREVFATPRRTVFGFGNA-EMDSEDLIAPEEMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGD--QFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E D + VM TM G +++ L+ F +
Sbjct: 612 QSRGRALINMLPLQQGERITTIMPLPEDEEDWGKLDVMFATMRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS-LSRNTRGSVAMRLK 772
G IA++ GDE+ V CT D V + + NG I + +R + R++ G + +
Sbjct: 672 GKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVNDVRVFVGRHSMGVRGINMG 731
Query: 773 DGDKMASMDIIPAALHKDLERTP-----------------------EDSHSNVK------ 803
D DK+ SM I+ ER+ E+S + V
Sbjct: 732 DNDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGNEESEATVTELTDER 791
Query: 804 ----GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV--FVVGFS 857
+ LL VSE G+GKR FR ++ G G + + + A + V F
Sbjct: 792 YMELSAHEQMLLTVSEFGYGKRSSSYDFR---ISGRGGKGIRATDPSKTAEIGKLVATFP 848
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+ E+ +Q++LVS G + R+ V I I R +GV + K+ S IS EP
Sbjct: 849 V----EAQDQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERIS--EP 902
Query: 918 ETDLFLPSTSD 928
E + P +
Sbjct: 903 EVNASEPDVEE 913
>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
Length = 814
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/828 (41%), Positives = 534/828 (64%), Gaps = 36/828 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
E+ S++ YSMSV++ RALPDVRDGLKPVHRRIL+A ++LGL+ KP+KK A VVGEV+
Sbjct: 16 EIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYKKSAFVVGEVMA 75
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+A Y ++VR+AQDF+ RYP++ G GNFGSID D AAAMRYTE R+ ++ ML
Sbjct: 76 KYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMRYTEARMSKIASEML 135
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
DI++DTV+ N+D +++EP +LP+R+P LL+NG+SGIAVGMATNIPPHNLGE++D +
Sbjct: 136 -RDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGV 194
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
AL N E T+ EL+ + GPDFPTG ++G GI+ AY TGRG + +RGKTE+E + +
Sbjct: 195 IALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVIMRGKTEIEQMKNG 254
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+R +II EIPYQ NK+ LVEKIAEL +K ++GI+D+RDES+ GMRIVIEL+R +
Sbjct: 255 KER--IIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMRIVIELRRDVNS 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++++N+LY+LT LQ SF NM+ ++DG PK + LKEVL +L+ + VV RR RF L++
Sbjct: 313 NVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVVVRRTRFDLNKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
K R HI+EG+ + LDN+DR+I ++R + + A + L +EF LSE QA AILDM L+RLT
Sbjct: 373 KARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINEFSLSEIQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER K +E K LME I LE++L+ + +L+++++E++E+K +F R S++ +
Sbjct: 433 GLERDKIEEEYKKLMELIEDLEDILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVD 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA--MSDFIVC 629
Q+++ D+I +++++ +S Y+KR+ +T+ Q RG G+ V + ND ++ + C
Sbjct: 493 QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRG--GRGVNGMTTNDEDNVAYMLSC 550
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
HDH+L+F+D+G VY+ + Y+I + +R + G P++ +L + E++ SII +S+ +
Sbjct: 551 STHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEG 610
Query: 690 FLVML-TMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
+M T G +KK L ++SI G IA++L GD L V+ T++ + + + NG
Sbjct: 611 TSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQA 670
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I + + +R + R +RG + L D + M+++ +
Sbjct: 671 IRINAEKVRQMGRVSRGVKGITLSPDDYVIGMEVVDES---------------------K 709
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L V+E+G GK + F +NR G G K + + V S++ +E +
Sbjct: 710 KILTVTENGIGKISKSTEFN--VINRGGK-GVKVAKVTKKTGKIVAVKSVS----GNEDL 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++++ G + RI V IS R A GV ++ L K+ + +L + E
Sbjct: 763 MIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEE 810
>gi|386761949|ref|YP_006235584.1| DNA gyrase subunit A [Helicobacter cinaedi PAGU611]
gi|385146965|dbj|BAM12473.1| DNA gyrase subunit A [Helicobacter cinaedi PAGU611]
Length = 824
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/745 (46%), Positives = 495/745 (66%), Gaps = 25/745 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V++ + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AM+EL LS R+P+KK AR
Sbjct: 10 VEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPYKKSAR 69
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 IVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTEARMT 129
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ SE ML DID+DTV FVPN+D + EP +LP+R+P LL+NG+SGIAVGMAT+IPPH +
Sbjct: 130 SASEEML-RDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIPPHRI 188
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++DVL +I N + ++LE + GPDFPTGG+I G +GIL+AYRTGRGRI VR K
Sbjct: 189 DEIIDVLIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVRAKVH 248
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E +K+K + ++I E+PYQ NK+ LVE+I+EL + K ++GI+++RDESDR G+R+VIE
Sbjct: 249 IE--KTKTKDV-IVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A IV+N L++ T ++S+F ++ I + +PK L E+LQ F+ R +++ RR+
Sbjct: 306 LKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRRS 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F+L + K R HI+EG+++ LDN+D +IRI+R + A AL ++F LSE QA AIL+
Sbjct: 366 IFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSELQAKAILE 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LER K E L EQI LE +L S + + +++ E++E+K +FS+ R +
Sbjct: 426 MRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQ 485
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+E+ D +D D+IPN+++++ +S +GYVKR+ T+ QNRG GK G +D +
Sbjct: 486 IEE-DYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKISGNTHEDDFIE 544
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
F V HD +++ +++G +Y + YKIPE R A G +V +++LS E+I + I ++
Sbjct: 545 SFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKIMATITTTD 604
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMAS 743
F D+ LV T NG +K+ +L +S+IR+ G+ AI L DEL ++ + +A+
Sbjct: 605 FNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKELFIAT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
Q GM I D +R + R RG ++ K AS D + AA
Sbjct: 665 QQGMCIRFGIDELREIGRVGRGVTGIKFK-----ASEDCVIAA--------------TTI 705
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFR 828
S LL VSE G GK+ +R
Sbjct: 706 TSDTDKLLTVSEQGIGKQTLAREYR 730
>gi|425433562|ref|ZP_18814096.1| DNA gyrase, A subunit [Helicobacter pylori GAM100Ai]
gi|410713904|gb|EKQ71396.1| DNA gyrase, A subunit [Helicobacter pylori GAM100Ai]
Length = 828
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG +RL + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
Length = 860
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/840 (42%), Positives = 527/840 (62%), Gaps = 34/840 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AMH+L ++S+ +KK A
Sbjct: 10 IINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAYKKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD +VYD+LVRMAQ FSLR PL+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 RIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYTEARM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E +L D+D+DTVNFVPN+D++ KEPS+LP R+PTLLLNG+ GIAVGMAT IPPHN
Sbjct: 130 TRIAEE-VLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGEL++ + LI PEAT EL++++ GPDFPTGG I G GI+DAY TGRGR+ +R K
Sbjct: 189 LGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKH 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K+ ++I E+PYQ NK+ L+E IA L ++K +DGIS++RDESDR G+R+VI
Sbjct: 249 HIE---TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N+LY+ T ++++F ++ + + +PK L ++L FL R +V+ RR
Sbjct: 306 ELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F L + K R HI+EG+ + +DN+D V++I+R + +++ A +L++ F LS Q+ AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENRFDLSAIQSQAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT L+R K E + LM I +LE +L S + + ++I +E+ E+K +FS R +
Sbjct: 426 DMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRKT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ED+ ++D D+IPN+ M++ I+ GYVKR+ + Q RG GK +D +
Sbjct: 486 EIEDS-YDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFI 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ ++ G +Y + YKIPE +R A G +V +++L E+I IIP
Sbjct: 545 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTP 604
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMA 742
+F + LV T NG IK+ SLN FS+IR+ G+ AI L DE+ + + +
Sbjct: 605 DFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIF 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G I + R R+TRG ++ K D D + D+I
Sbjct: 665 TSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVI------------------ 706
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
S +L VSE G GKR + +R G+I K S + V+G L +D
Sbjct: 707 --SSEDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTK----TGNVIGEVLVDD 760
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
+ ++L++ G + R+ + I R GVI++ ++ + K+ S + + E +L
Sbjct: 761 TQD---LMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIEL 817
>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
Length = 922
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/898 (41%), Positives = 538/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 132 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 191 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 251 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 308
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 309 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 368
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 369 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 428
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 429 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 488
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 489 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 547
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V +H VL+FS RGIVY + +++P T
Sbjct: 548 PLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTP 607
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 608 QSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 667
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G ++L
Sbjct: 668 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLA 727
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 728 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 787
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 788 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 845
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + + K+ S IS
Sbjct: 846 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERIS 896
Score = 39.7 bits (91), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV---CRAHDHVLYF 638
+E +L +SE GY KR F + RG G D + + D +L
Sbjct: 795 EETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLV 854
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
SD G + I R+ G V I +++DGE++ S+ +S+ D+
Sbjct: 855 SDGGQLIRVPVDGIRIAGRSTKG---VTIFNMADGEKVVSVERISDADSDE 902
>gi|340782128|ref|YP_004748735.1| DNA gyrase subunit A [Acidithiobacillus caldus SM-1]
gi|340556281|gb|AEK58035.1| DNA gyrase subunit A [Acidithiobacillus caldus SM-1]
Length = 847
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/862 (42%), Positives = 537/862 (62%), Gaps = 60/862 (6%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AMHE+G KP+KK AR
Sbjct: 9 IPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD++VRMAQDFS+RYPLI G GNFGS+D D AAMRYTE R+
Sbjct: 69 VVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ M LADI+++TV+F PN+DE + EP +LPAR+P LL+NG++GIAVGMATNIPPHNL
Sbjct: 129 RIAHEM-LADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+++ AL+ + + EL +P PDFPT G+++GN G ++AYR+GRGR+ +R + E
Sbjct: 188 TEILNACIALVDDDDLPDSELFRLVPAPDFPTAGILLGNEGAIEAYRSGRGRVVMRARAE 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E D+KS R + + E+PYQ NK+ L+E+IAE+V+ K LDG+SD+RDESD+SGMRI IE
Sbjct: 248 IE-TDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGVSDLRDESDKSGMRIAIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A+ +V+N+LY+ TALQS F+ NMV +LDG P+ +GL++ L+AFL R VV RR+
Sbjct: 307 LKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVVTRRS 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA------------------------PS 480
F L + ++R HI+EG+ V L NLD +I ++R A
Sbjct: 367 IFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLAE 426
Query: 481 NSTASAALK-DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSR 539
SA L+ D + LSE QA AILD+ L RLT LE+ K +E L+E+I +L E+L S
Sbjct: 427 RGEPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILGSD 486
Query: 540 KNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKP 599
++ +I E++ +++++ R S + AD+G + + D+I + M++ + GY+K
Sbjct: 487 ARLMAVIRAELVAIRDQYGDARRSEIV-ADTGVIANEDLIAEENMVVTFTHAGYIKAQPV 545
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
TFN Q RG GK + D + H VL+FS+ G V+ + Y++P+ R+A
Sbjct: 546 TTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRSA 605
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI 719
G P+V +LSL+ E IT+++PV EF Q++ M+T +G +KK L +S R+ GI AI
Sbjct: 606 RGKPIVNLLSLAPSEGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYSRPRSQGINAI 665
Query: 720 QLVPGDELKWVRCCTNDDL--VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKM 777
L PGD L V C +D + ++ GM + D +R + R RG + L D++
Sbjct: 666 NLDPGDRL--VAVCLSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARGVRGISLDADDRV 723
Query: 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
S I+ P+ +L + G+GK + +R+ G+
Sbjct: 724 ISAQIV----------DPDQV-----------ILTATAKGYGKLTNVEEYRRTNRGGKGV 762
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
I + +A + VVG +LA ESDE ++LVS GT+ RI V+ I R A+GV L
Sbjct: 763 IAIQTNARNGQ----VVG-ALAVK-ESDE-LMLVSNGGTLIRIAVQGIRRTGRNAQGVRL 815
Query: 898 MRLELSGKIQSASLISVTEPET 919
++L ++ +LI+ + E
Sbjct: 816 IQLAPDEQLAGLALIADAQEEA 837
>gi|418453179|ref|ZP_13024494.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS10]
gi|387741253|gb|EIK28110.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS10]
Length = 889
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYQAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|418653256|ref|ZP_13215201.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-99]
gi|375019561|gb|EHS13114.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-99]
Length = 889
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD +Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLPIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|342214713|ref|ZP_08707394.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 780 str. F0422]
gi|341591454|gb|EGS34614.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 780 str. F0422]
Length = 824
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/834 (42%), Positives = 531/834 (63%), Gaps = 33/834 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+IVPV++ +EM SYI Y+MSV++ RALPDVRDGLKPVHRRIL+AMHE G++ KP+KK
Sbjct: 10 KIVPVQIDKEMRSSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPSKPYKKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VYD+ VR+AQDF+ RYPL+ GHGNFGSID D AAAMRYTE R
Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYPLVDGHGNFGSIDGDSAAAMRYTEVR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML ADI++ TV+F+PN+DES +EP++LPA++P LL+NG++GIAVGMATNIPPH
Sbjct: 130 MSRIATEML-ADIEKKTVDFMPNYDESLEEPTVLPAKIPNLLINGSAGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE+VD L LI +PE + +L+ + GPDFPTG I+G GI AY TGRG I +R K
Sbjct: 189 NLGEVVDGLVMLIDDPEVDVNQLMTAIKGPDFPTGASILGREGIKKAYATGRGSIKMRAK 248
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E + R +++ EIPYQ NK+ L+ IA+L +K +DGI+ +RDESDR G+RIV
Sbjct: 249 AHIEAMTKGKHR--IVVTEIPYQVNKARLIATIADLSRDKVVDGITALRDESDRRGLRIV 306
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IEL+ P IV+N LY+ T LQ +F M+ ++ G PK + LKEVL +L R V+ R
Sbjct: 307 IELRADVQPDIVLNKLYKHTQLQDTFGVIMLALVKGHPKVLTLKEVLGHYLTHRQEVIVR 366
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L++ + R H++EG+++ LD++D VI +R + + A AAL ++F L+E QA+AI
Sbjct: 367 RTEFDLAKAEARAHVLEGLLIALDHIDEVIHTIRSSQTTDIARAALIEKFSLTEIQANAI 426
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K +E L+ I L+ +L+S + ++I++E+I +K ++ R
Sbjct: 427 LDMRLARLTGLEREKIEEEHAALLVLIADLKAILASDERQREIIKEELIAMKEKYGDKRR 486
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
S + D+ D D+I ++EM++ ++ +GY+KRM N + Q++G +G K + +D
Sbjct: 487 SEIT-IDTSDFDVEDLIADEEMVITLTRQGYIKRMNANVYRNQHKGGVGVVGMKTKDDDY 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC-TRNAAGTPLVQILSLSDGERITSIIP 681
++ + R H+ +L+F+ G Y +AY++PE +RN+ GT ++ +L L+ GE +T++I
Sbjct: 546 VAQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEASSRNSRGTAIINVLPLNVGETVTNMID 605
Query: 682 VSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
+ + D L M+T G +K+ +++ + +IR G+ A+ L GD+L V + V +
Sbjct: 606 LERISSDVNLFMVTKQGVVKRTAIDEYRNIRRGGLNAVALDEGDQLISVGLTYGNQDVLL 665
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
++ GM I +R + R RG + L GD++ II T E+
Sbjct: 666 GTKKGMAIRFHESDVRLMKRAARGVKGINLNTGDEVVGASIIHG--------TGEECQ-- 715
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAE 860
+ +SE G+GKR SS+ + + G G K F ++ V V E
Sbjct: 716 --------VFTISEEGYGKRNVESSY---TVQKRGGKGTKNFKITEKTGEVVAV-----E 759
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYA-RGVILMRLELSGKIQSASLIS 913
+++++L+S+ G + R V DI+++ A GV L+ KI S ++IS
Sbjct: 760 IVNDNDEMMLISEQGKIIRFDVNDIAVKKSKAISGVKTQNLDEGDKIASVAVIS 813
>gi|417938363|ref|ZP_12581661.1| DNA gyrase, A subunit [Streptococcus infantis SK970]
gi|343391453|gb|EGV04028.1| DNA gyrase, A subunit [Streptococcus infantis SK970]
Length = 822
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/837 (40%), Positives = 535/837 (63%), Gaps = 34/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+V V L +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP KK A
Sbjct: 6 LVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+ G+V+GK+HPHGD+++Y+++VRMAQ +S RY L+ GHGNFGS+D D AAA RYTE R+
Sbjct: 66 RITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEARM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML DI+++TV+FV N+D +++EP +LPAR P LL+NGA+GIAVGMATNIPPHN
Sbjct: 126 SKIALEML-RDINKNTVDFVDNYDANEREPMVLPARFPNLLVNGATGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D + ++ NPE T ++L+E +PGPDFPTG L+MG GI AY TG+G I +R +T
Sbjct: 185 LGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLRSRT 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E ++K+ R +++ E PY NK+ + E I LV+ K +DGI+ +RDES+R G+R VI
Sbjct: 245 EIE--ETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E++R A ++++N+L+++T +Q+SF NM+ I +G PK + L+++L A+++ + VV RR
Sbjct: 303 EVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F + + R HI+EG+++ LD++D VIRI+R + ++ A A L +FKLSE+Q+ AIL
Sbjct: 363 TQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER K E L+ I L ++L+ + + Q+I++E+ E+K +F R +
Sbjct: 423 DMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGDKRRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
L + L+D D+I ++L+ +S KGY+KR+ + F Q RG G ++ +D +
Sbjct: 483 ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
+ + HDH+L+F+++G VY + Y+IPE R A G P+V +L L +GE I +II V
Sbjct: 543 RELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVE 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
SE + D +L T G +K+ S+ F++IR G+ A+ L DEL V D + +
Sbjct: 603 SERSDDAYLFFTTRQGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + ++RS+SR+ G + L++GD + +I T +D
Sbjct: 663 TKLGYAVRFNQSLVRSMSRSATGVKGVNLREGDAVVGARVI----------TDQDE---- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+L ++E G+GKR + + G+ + ++ RLA + V
Sbjct: 709 -------VLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKNGRLAGLLTV------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ DE +++++ +G + R V +IS R GV +MRL+ + KI + + ++ E E
Sbjct: 755 -KGDEDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAEKE 810
>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
Length = 894
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 545/881 (61%), Gaps = 93/881 (10%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDEL-------------------KWVRCCTNDDLVAMASQN 745
L+ F+++R+ G+IA+ L D L K VR +++ A+ +N
Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEE-TAVVDEN 717
Query: 746 GMVILSSCDI-------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
G +L +R + R G M+L DGD++ S+ I+P A
Sbjct: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKA------------ 764
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+G +L V+E+G+GKR LS + G++ K S + VVG
Sbjct: 765 ----EGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG----SVVGAVQ 812
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+G+ + ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 813 VAEGD---EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TT 714
R AAG V+ + L+DG+++ S+I V + GD ++ +T NGY K+ SL+ + + T
Sbjct: 740 RTAAG---VRGMKLADGDQVVSLI-VPKAEGD--VLTVTENGYGKRTSLSEYPTKGRGTQ 793
Query: 715 GIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+++I++ G + V+ D+ + M + G ++ + + + RNT+G +R
Sbjct: 794 GVVSIKVSERNGSVVGAVQVAEGDEFM-MITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
Query: 773 DGDKMASMDII 783
+G+ + + I
Sbjct: 853 EGESVVGLQRI 863
>gi|421716787|ref|ZP_16156096.1| DNA gyrase, A subunit [Helicobacter pylori R037c]
gi|407220008|gb|EKE89819.1| DNA gyrase, A subunit [Helicobacter pylori R037c]
Length = 832
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/830 (42%), Positives = 538/830 (64%), Gaps = 32/830 (3%)
Query: 70 NGSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMH 129
+ SV N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMH
Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62
Query: 130 ELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSID 189
ELGL+S+ +KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID
Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122
Query: 190 ADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGAS 249
D AAAMRYTE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+
Sbjct: 123 GDNAAAMRYTEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 181
Query: 250 GIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDA 309
GIAVGMAT+IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++A
Sbjct: 182 GIAVGMATSIPPHRMDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 241
Query: 310 YRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISD 369
Y+TGRGR+ VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS+
Sbjct: 242 YKTGRGRVKVRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298
Query: 370 IRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVL 429
+RDESDR G+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELL 358
Query: 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK 489
+ FL+ R +++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALM 418
Query: 490 DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549
+ F LSE Q+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTE 478
Query: 550 VIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
++E+K +FS+PR + ++++ +D D+I N+ +++++S KGYVKR+ + QNRG
Sbjct: 479 LLEVKEQFSSPRRTEIQESYE-NIDIEDLIANEPVVVSMSYKGYVKRVDLKAYEKQNRGG 537
Query: 610 IGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS 669
GK G +D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++S
Sbjct: 538 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS 597
Query: 670 LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKW 729
L+ E+I + + +F+ ++ L T NG +K+ +L+ F S R+ GI AI L DEL
Sbjct: 598 LAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDECDELVS 657
Query: 730 VRCC-TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
+ N + +AS G+ I + +R + R TRG + +RL + D + +I
Sbjct: 658 AKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISG--- 714
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
G LL VSE+G GK+ ++R+ G+IG + + +
Sbjct: 715 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMRLTQK--- 754
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+VG +D D +++++ S + R+ ++DI R A GV L+
Sbjct: 755 -TGNLVGVISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 801
>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
Length = 880
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/866 (41%), Positives = 540/866 (62%), Gaps = 77/866 (8%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIEA--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L+ F+++R G+IA+ L D L V + + + S++G V+ + I NT+
Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTK 718
Query: 765 GSV-----------AMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFV 813
G V ++L +GD++ S+ I+P + +L V
Sbjct: 719 GGVRPMGRTAAGVRGIKLVEGDQVVSL-IVP--------------------KNDGDILTV 757
Query: 814 SESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQ 873
+E+G+GKR L + G++ K S + VVG +G ++ ++++
Sbjct: 758 TENGYGKRTTLDEYPAKSRATQGVVSIKVSERNG----SVVGAVQVTEG---DEFMMITN 810
Query: 874 SGTVNRIKVRDISIQARYARGVILMR 899
+GT+ R +V ++S R +GV L+R
Sbjct: 811 AGTLVRTRVAEVSQVGRNTQGVTLIR 836
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 100/212 (47%), Gaps = 20/212 (9%)
Query: 582 DEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
D+ + + G VK+ + F N++ G I + LR +DA+ + ++ FS
Sbjct: 642 DKFIFMATGDGTVKKTSLDQFANVRANGLIAVN---LRDDDALIGVEITDGESDIMLFSK 698
Query: 641 RGIVYSARAYKIPECTRNAAGT--PL------VQILSLSDGERITSIIPVSEFAGDQFLV 692
G V I + N G P+ V+ + L +G+++ S+I V + GD ++
Sbjct: 699 SGKVVRFNEKPIEDEEGNTKGGVRPMGRTAAGVRGIKLVEGDQVVSLI-VPKNDGD--IL 755
Query: 693 MLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMV 748
+T NGY K+ +L+ + S T G+++I++ G + V+ D+ + M + G +
Sbjct: 756 TVTENGYGKRTTLDEYPAKSRATQGVVSIKVSERNGSVVGAVQVTEGDEFM-MITNAGTL 814
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASM 780
+ + + + RNT+G +R +G+ + +
Sbjct: 815 VRTRVAEVSQVGRNTQGVTLIRTSEGESVVGL 846
>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
Length = 893
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 545/881 (61%), Gaps = 93/881 (10%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDEL-------------------KWVRCCTNDDLVAMASQN 745
L+ F+++R+ G+IA+ L D L K VR +++ A+ +N
Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEE-TAVVDEN 717
Query: 746 GMVILSSCDI-------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
G +L +R + R G M+L DGD++ S+ I+P A
Sbjct: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKA------------ 764
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+G +L V+E+G+GKR LS + G++ K S + VVG
Sbjct: 765 ----EGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG----SVVGAVQ 812
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+G+ + ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 813 VAEGD---EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
gi|418435582|ref|ZP_13007422.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS4]
gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
gi|387722715|gb|EIK10501.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS4]
Length = 889
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
Length = 824
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/745 (45%), Positives = 494/745 (66%), Gaps = 25/745 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V++ + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AM+EL LS R+P+KK AR
Sbjct: 10 VEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPYKKSAR 69
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 IVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTEARMT 129
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ SE ML DID+DTV FVPN+D + EP +LP+R+P LL+NG+SGIAVGMAT+IPPH +
Sbjct: 130 SASEEML-RDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIPPHRI 188
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D L +I N + ++LE + GPDFPTGG+I G +GIL+AYRTGRGRI VR K
Sbjct: 189 DEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVRAKVH 248
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E +K+K + ++I E+PYQ NK+ LVE+I+EL + K ++GI+++RDESDR G+R+VIE
Sbjct: 249 IE--KTKTKDV-IVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A IV+N L++ T ++S+F ++ I + +PK L E+LQ F+ R +++ RR+
Sbjct: 306 LKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRRS 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F+L + K R HI+EG+++ LDN+D +IRI+R + A AL ++F LSE QA AIL+
Sbjct: 366 IFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSELQAKAILE 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LER K E L EQI LE +L S + + +++ E++E+K +FS+ R +
Sbjct: 426 MRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQ 485
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+E+ D +D D+IPN+++++ +S +GYVKR+ T+ QNRG GK G +D +
Sbjct: 486 IEE-DYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNTHEDDFIE 544
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
F V HD +++ +++G +Y + YKIPE R A G +V +++LS E+I + I ++
Sbjct: 545 SFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKIMATITTTD 604
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMAS 743
F D+ LV T NG +K+ +L +S+IR+ G+ AI L DEL ++ + +A+
Sbjct: 605 FNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKELFIAT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
Q GM I D +R + R RG ++ K AS D + AA
Sbjct: 665 QQGMCIRFGIDELREIGRVGRGVTGIKFK-----ASEDCVIAA--------------TTI 705
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFR 828
S LL VSE G GK+ +R
Sbjct: 706 TSDTDKLLTVSEQGIGKQTLAGEYR 730
>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 810
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/831 (41%), Positives = 541/831 (65%), Gaps = 36/831 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V++ ++M SY+ YSMSV++ RALPDVRDGLKPVHRRI++ M LG++ K ++K A
Sbjct: 10 IIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPDKSYRKSA 69
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
+VGEV+GKFHPHGD+++YD+ R+AQDF++RY L+ G GNFG++D D AA RYTE R+
Sbjct: 70 TLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAPRYTEMRM 129
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+++ M L DI++DTV+FVPN+DE + EPS+LP+R P +L+NG++GIAVGMATN+ PHN
Sbjct: 130 SKIAQEM-LRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMATNMAPHN 188
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE + + I+N + ++EL++ + GPDFPTG +I+G GI+DAY+TGRG+I VR +
Sbjct: 189 LGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKIQVRARA 248
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD-ESDRSGMRIV 382
E+E R ++I EIPYQ NK+ L+ KIA+LV+NK+++GIS+IRD S ++G++I
Sbjct: 249 EIE---EHKGRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTGIKID 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+LKR A+P++V+N+LY+ T +Q +F + +++G+PK + LKE+++ ++D + +VV R
Sbjct: 306 IDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNGEPKVLNLKEIIKYYVDHQRNVVRR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + + R HI+EG+ + LDN+DR+I+IVRE+ + A EF L++ Q AI
Sbjct: 366 RTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFGLTDIQGQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM +RRLT LER+K E + L++ I KL+ +L ++K + I +E+ E+K ++S R
Sbjct: 426 LDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSILENKKLLDNTIIEELEEIKEKYSDLRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
++L D G +D D+I +++++ ++E GY+KRM T+ Q RG G S R D
Sbjct: 486 TVLA-PDEGDIDSEDLIEEEDVVITLTEFGYIKRMPEGTYKPQRRGGTGISALTTREEDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ D + HD +L+F++ G VYS +AY+IPE +R A GT ++ +L+L E +T++IPV
Sbjct: 545 VKDIYITSTHDTILFFTNFGRVYSLKAYEIPESSRQAKGTAIINLLNLEGDEFVTAVIPV 604
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
+ LVM T NG IKK S + F IR G+IAI L GD L VR + D + +
Sbjct: 605 RNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIGVRLTSGRDEIMIV 664
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++NGM I S +R++ R G ++ LK+ D++ S +I P+D
Sbjct: 665 TKNGMAIRFSESDVRNMGRTAMGVKSIDLKNDDEVVSFEI------------PQDDK--- 709
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAED 861
+LL +SE+G GK ++ +RK VGL+ YK + + +L + V+
Sbjct: 710 ------YLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATEKSGKLVSAKVI------- 756
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ +++++++ SG + RI IS+ R+ GV LM ++ S + A I
Sbjct: 757 -DKSDEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNIKDSEVVSVAKYI 806
>gi|420428706|ref|ZP_14927741.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-17]
gi|393046365|gb|EJB47345.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-17]
Length = 828
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/822 (43%), Positives = 541/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALMHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S TA AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPETAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I S + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFSLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D + D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDEKLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|420440467|ref|ZP_14939423.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-30]
gi|393056694|gb|EJB57605.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-30]
Length = 828
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 539/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGKGKLSGNTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|381169171|ref|ZP_09878345.1| DNA gyrase, subunit A, type II topoisomerase [Phaeospirillum
molischianum DSM 120]
gi|380681785|emb|CCG43167.1| DNA gyrase, subunit A, type II topoisomerase [Phaeospirillum
molischianum DSM 120]
Length = 897
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/876 (41%), Positives = 542/876 (61%), Gaps = 59/876 (6%)
Query: 78 PNVSPR--IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSS 135
P SP+ I PV + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRILFAM E G
Sbjct: 4 PPASPQFDITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEAGYDF 63
Query: 136 RKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAA 195
KPF+K AR+VG+V+GK+HPHGD+A+YD++VRMAQ FS+R PLI G GNFGS+D DP AA
Sbjct: 64 NKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQTFSMRLPLINGQGNFGSMDGDPPAA 123
Query: 196 MRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
MRYTE RL ++ + L+ DID++TV+F N+DES EP +LPAR P LL+NGA GIAVGM
Sbjct: 124 MRYTEARLARVAHS-LIEDIDKETVDFQANYDESSFEPMVLPARFPNLLVNGAGGIAVGM 182
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNLGE++D CA I +PE T L E +PGPDFPTGG I+G GI A TGRG
Sbjct: 183 ATNIPPHNLGEVIDACCAYIDDPEVTPDRLTEIVPGPDFPTGGTILGRAGIRAAQLTGRG 242
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
+ +R + E + + R +I+ E+PYQ NK+ ++E+IAELV +K ++GISD+RDESD
Sbjct: 243 SVILRARIHFEEI--RKDREAIIVTEMPYQVNKARMLEQIAELVRDKKIEGISDLRDESD 300
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
R G+R+VIEL+R A IV+N LYR T LQ+SF N + + G+P+ M LK+++ AF+ F
Sbjct: 301 RDGVRVVIELRRDAIAEIVLNQLYRFTPLQTSFGVNTLALNGGRPEMMTLKDIIAAFVSF 360
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK------ 489
R V+ RR F+L + ++R H++ G+ + + N+D VIR++R AP STA L
Sbjct: 361 REEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPSTAREQLMTRAWAV 420
Query: 490 ----------DE---------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
DE ++LSE QA AILD+ L RLT LER K DE + + QI+
Sbjct: 421 GDVESLIRLIDEPGRGIEDGTYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGAQIV 480
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
+ E+LSSR L ++++E+ E++ +F+TPR +M+E+ + + D D+I ++M++ ++
Sbjct: 481 EFLEILSSRTRRLDVMKEELAEIREQFATPRRTMIEE-NEFEADIEDLIAREDMVVTVTN 539
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
GY+KR+ + + Q RG G+S ++ D ++ V H +L+FS GI Y + Y
Sbjct: 540 TGYIKRVPLSAYRAQKRGGKGRSGMNIKEEDFLNQVFVANTHAPMLFFSSAGIAYKLKVY 599
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSE---FAGDQFLVMLTMNGYIKKVSLNL 707
++P T A G +V +L L +GE I++I+P+ E GD ++ T G +++ L+
Sbjct: 600 RLPLGTPQARGKAMVNLLPLDEGETISTIMPLPEDEAVWGDLHVMFATSRGDVRRNLLSD 659
Query: 708 FSSIRTTGIIAIQLVPGDELKWVRCCTND-DLVAMASQNGMVILSSCDIIRSL-SRNTRG 765
F+ +R G IA++L G+ L V+ C+ + D V +A++ G I + +R R++ G
Sbjct: 660 FAEVRANGKIAMKLGEGERLISVQTCSAETDDVLLATRMGKAIRFAVREVREFKGRDSTG 719
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP-----------WLLFVS 814
+RL++GD++ SM I+ H D + ++ S +G P ++L V+
Sbjct: 720 VRGVRLEEGDEVISMSILA---HVDYDSETREAFS--RGELSPEQTEKMRAEEQFILTVT 774
Query: 815 ESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQS 874
E+G GKR +R G+ +A+ V F + + D++++LVS
Sbjct: 775 ENGFGKRTSAFEYRITGRGGQGIANIDMTAK---TGTVVASFPIGD----DDEIMLVSDG 827
Query: 875 GTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
G + R+ V DI I R +GV L+R ++ SA+
Sbjct: 828 GKLIRMPVFDIRIAGRKTQGVTLLRTAEGERVVSAA 863
>gi|395779792|ref|ZP_10460261.1| DNA gyrase, A subunit [Bartonella washoensis 085-0475]
gi|395420167|gb|EJF86452.1| DNA gyrase, A subunit [Bartonella washoensis 085-0475]
Length = 925
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/903 (41%), Positives = 538/903 (59%), Gaps = 78/903 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LLADID+DTV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKISEE-LLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD ALI NP+ TL +++E +PGPDFPTGG+I+G+ GI AY TGRG I +R K
Sbjct: 195 LGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGIRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EK+AELV +K ++GISD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR +V+N LYR T LQ+SF CNMV + G+P+QM L E+L+AF+ FR VV RR
Sbjct: 313 ELKRDVVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLEMLRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
++ L + +ER H++ G+ + + N+D +I ++R+AP TA L +
Sbjct: 373 TKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIQLMERRWPAADVAPLIR 432
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ LSE+QA AIL++ L+RLT L R + DE + I +L+
Sbjct: 433 LIDDPRHIIHEDSTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLHILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F+TPR ++ S ++D D+I ++M++ +S GY+KR+
Sbjct: 493 SRSRIMGIVKDELNALREEFATPRRTVF-GFGSAEMDSEDLIAPEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P +
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSSRGIVYKEKVWRLPLGSP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 612 QSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLKD 773
G IA++L DE+ V CT D V + + NG I +R + RN+ G + L +
Sbjct: 672 GKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRVFAGRNSVGVRGINLAN 731
Query: 774 GDKMASMDIIPAALHKDLERTP------------------------EDSHSNVKGSSGPW 809
GDK+ SM I+ + +ER+ +D + + + +
Sbjct: 732 GDKVISMTILEHVVATSVERSAYIKRVIQERRAAGADAEDIVTLDEDDEGTETELTDERY 791
Query: 810 ---------LLFVSESGHGKRVPLSSFRKLPLNRVGLIGY---KFSAEDRLAAVFVVGFS 857
LL VSE G+GKR FR G+ K S +L A F V
Sbjct: 792 AELNAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTSEIGKLVAAFPV--- 848
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
++ +Q++LVS G + R+ V I I R +GV + K+ S IS E
Sbjct: 849 -----KAQDQIMLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISEAED 903
Query: 918 ETD 920
+T+
Sbjct: 904 DTN 906
>gi|420487401|ref|ZP_14986005.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-8]
gi|420521184|ref|ZP_15019615.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-8b]
gi|393101978|gb|EJC02544.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-8]
gi|393127771|gb|EJC28216.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-8b]
Length = 828
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|418324491|ref|ZP_12935728.1| DNA gyrase, A subunit [Staphylococcus pettenkoferi VCU012]
gi|365225908|gb|EHM67144.1| DNA gyrase, A subunit [Staphylococcus pettenkoferi VCU012]
Length = 889
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/820 (40%), Positives = 533/820 (65%), Gaps = 31/820 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQ+FS RYPL+ G GNFGS+D D AAAMRYTE +
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQNFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F+ N+D +++EP +L +R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKITLEML-RDINKDTIDFIDNYDGTEREPVVLTSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E+++ + +L HNP+ T+ EL+E + GPDFPT GLIMG GI AY TGRG I +R +
Sbjct: 187 NLTEVINGVLSLSHNPDITVAELMEDIQGPDFPTAGLIMGKSGIRRAYETGRGSIQMRAR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+PYQ NK+ ++EKIAEL +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKVDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ ++++N+LY+LT LQ+SF N + +++G+PK + LKE L +L+ + VV
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGVNTIALVNGRPKLINLKEALVEYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I I+RE+ ++ A A+L++ FKLS++QA A
Sbjct: 365 RRTEYNLRKAQDRAHILEGLRIALDHIDEIISIIRESETDKIAMASLQERFKLSDRQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L++ I +L+E+L+ + +LQ++ E+IE+++R+ R
Sbjct: 425 ILDMRLRRLTGLERDKVESEYNELVQYIKELKEILADDELLLQIVRDELIEIRDRYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ + ++D D+IP +++++ +S Y+KR+ +T+ Q+RG G D
Sbjct: 485 RTEIQLGNIDSIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELDNDESISTMIA 604
Query: 682 VSEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + D FLV T G +K+ +L+ FS I G IAI DEL VR + +
Sbjct: 605 VKDLTTEDHFLVFATKRGIVKRSALSNFSHINKNGKIAISFKEDDELIAVRLTDGTEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L RN G + L++ D++ +D+ +H
Sbjct: 665 IGTAHASLIRFQESGLRPLGRNAAGVKGISLRENDEVVGLDV---------------AHE 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
N S +L V+E G GKR P+S +R L+ G +G K + V ++
Sbjct: 710 N----SEDEVLVVTEKGFGKRTPVSDYR---LSNRGGMGIKTATITERNGNIVCITTVT- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
DE +++V+ G + R++ +DIS R A+GV L+RL
Sbjct: 762 ---GDEDIMVVTNHGVIIRMEAQDISQNGRAAQGVKLIRL 798
>gi|384897409|ref|YP_005772837.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
Length = 828
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 536/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILRSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + +++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQEVYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F S R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + RN RG + +RL + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISG----------- 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 ---------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|424590492|ref|ZP_18029929.1| DNA gyrase, A subunit [Vibrio cholerae CP1037(10)]
gi|408034584|gb|EKG71077.1| DNA gyrase, A subunit [Vibrio cholerae CP1037(10)]
Length = 894
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 544/881 (61%), Gaps = 93/881 (10%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDEL-------------------KWVRCCTNDDLVAMASQN 745
L+ F+++R G+IA+ L D L K VR +++ A+ +N
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEE-TAVVDEN 717
Query: 746 GMVILSSCDI-------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
G +L +R + R G M+L DGD++ S+ I+P A
Sbjct: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKA------------ 764
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+G +L V+E+G+GKR LS + G++ K S + VVG
Sbjct: 765 ----EGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG----SVVGAVQ 812
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+G+ + ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 813 VAEGD---EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR--TT 714
R AAG V+ + L+DG+++ S+I V + GD ++ +T NGY K+ SL+ + + T
Sbjct: 740 RTAAG---VRGMKLADGDQVVSLI-VPKAEGD--VLTVTENGYGKRTSLSEYPTKGRGTQ 793
Query: 715 GIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
G+++I++ G + V+ D+ + M + G ++ + + + RNT+G +R
Sbjct: 794 GVVSIKVSERNGSVVGAVQVAEGDEFM-MITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
Query: 773 DGDKMASMDII 783
+G+ + + I
Sbjct: 853 EGESVVGLQRI 863
>gi|425737843|ref|ZP_18856113.1| DNA gyrase subunit A [Staphylococcus massiliensis S46]
gi|425480996|gb|EKU48158.1| DNA gyrase subunit A [Staphylococcus massiliensis S46]
Length = 881
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/821 (41%), Positives = 531/821 (64%), Gaps = 31/821 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNISSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ L+ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MTKLT-LELLRDINKDTIDFIDNYDGTEREPSVLPARFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E++D + +L +NP+ T+ EL+ + GPDFPT GLI+G GI AY TGRG I +R K
Sbjct: 187 NMTEVIDGVLSLSYNPDITISELMNDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ E+P+Q NK+ ++EKIAEL +K ++GI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--SRGNGRESIVVTEVPFQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++KR A+ ++V+N+LY+LT LQ+SF NM+ +++G+P+ + LK+ L+++L+ + VV
Sbjct: 305 VIDVKREANANVVLNNLYKLTPLQTSFGVNMIALVNGRPRLINLKQALESYLEHQKVVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A +L++ FKLSE+QA A
Sbjct: 365 RRTEYNLRKAEDRAHILEGLRIALDHIDEIISTIRESETDKIAMDSLQERFKLSERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K DE L+E I +L+ +L+ + +L ++ +E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEDEYNQLIEYIKELKAILADEELLLNIVREELEEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ ++D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQIGGIDHIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDH+L+F+++G VY + Y++PE +R + G P+V L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHILFFTNKGRVYKLKGYEVPELSRQSKGIPIVNALEIEKDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + D +LV T G +K+ LN FS I G IAI DEL VR + +
Sbjct: 605 VKDLDKEDDYLVFATKQGIVKRSRLNNFSRINKNGKIAISFKDHDELIAVRLIDGNQDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ +++ +I +R L R G + L++GD + +D+ HK+
Sbjct: 665 IGTKHASLIRFDESTLRPLGRTAAGVKGITLREGDMVVGLDV----AHKE---------- 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
S +L V++ G+GKR ++ +R L+ G G K + V +++
Sbjct: 711 -----SDDEILVVTDKGYGKRTNVNEYR---LSNRGGKGIKTATLTERNGDIVCITTVS- 761
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
DE +++V+ G + R++V DIS R +GV L+RL+
Sbjct: 762 ---GDEDLMIVTNLGVIIRLQVEDISQTGRATQGVRLIRLQ 799
Score = 40.8 bits (94), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 23/207 (11%)
Query: 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNR-GTIGKSVGK------LRVNDAMSDFIVC 629
D+ D+ L+ +++G VKR + N F+ N+ G I S +R+ D D ++
Sbjct: 607 DLDKEDDYLVFATKQGIVKRSRLNNFSRINKNGKIAISFKDHDELIAVRLIDGNQDILIG 666
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ 689
H ++ F + + R AAG V+ ++L +G+ + + + + D+
Sbjct: 667 TKHASLIRFDES---------TLRPLGRTAAG---VKGITLREGDMVVGLDVAHKESDDE 714
Query: 690 FLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWVRCCTNDDLVAMASQNG 746
LV +T GY K+ ++N + S+ GI L + ++ + + D+ + + + G
Sbjct: 715 ILV-VTDKGYGKRTNVNEYRLSNRGGKGIKTATLTERNGDIVCITTVSGDEDLMIVTNLG 773
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKD 773
++I + I R T+G +RL+D
Sbjct: 774 VIIRLQVEDISQTGRATQGVRLIRLQD 800
>gi|418456116|ref|ZP_13027362.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS11a]
gi|418458992|ref|ZP_13030177.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS11b]
gi|387741730|gb|EIK28563.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS11a]
gi|387742965|gb|EIK29767.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus VRS11b]
Length = 889
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y ++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYAAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
Length = 855
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/850 (40%), Positives = 535/850 (62%), Gaps = 41/850 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN+ ++ ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL K
Sbjct: 3 PNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ +S RY L+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI+++TV+FVPNFDE+++EP +LP+R P LL NG SGIAVGMAT
Sbjct: 123 YTEARLSRISMEML-ADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL EL+ + +I N + +++EL+E + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
G+G+I VR T++E + + R +I+ EIPY NK+ L+EKIAELV++K +DGI+D+RD
Sbjct: 242 GKGKIRVRAVTDIETMPNGKSR--IIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMRI IEL+R + +IV+N L + T LQ +F NM+ +++ +PK + L ++L +
Sbjct: 300 ESNREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
LD + VV RR ++ L++ +ER HI+EG++ LD +D VIRI+R + + + A A L + F
Sbjct: 360 LDHQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
+LS+ QA AI+DM LR LT LER+K ++E + L ++I +L +L+ +L +I++E+
Sbjct: 420 ELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQL 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP++++++AI+ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDDRRTKI-GYDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + + ++ H ++++F++ G VY +AY+IPE R A GT +V ++ L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+IT+ +P+ EF D+FL M T NG +K+ + + ++R G+ AI L DEL V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + + ++ GM I +R R + G + M+ D++ M +
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSDDEIIGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VSE G GKR P+ F G+ Y+ + +
Sbjct: 709 -------------ASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEK----T 751
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
++VG L ++G Q++L++ G + +++V ISI R GV LM ++ + AS
Sbjct: 752 GYLVGAKLVDEG---RQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVAS 808
Query: 911 LISVTEPETD 920
+ V E D
Sbjct: 809 IAKVRESSQD 818
>gi|408409793|ref|ZP_11181071.1| DNA gyrase, A subunit [Lactobacillus sp. 66c]
gi|407876034|emb|CCK82877.1| DNA gyrase, A subunit [Lactobacillus sp. 66c]
Length = 837
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/837 (41%), Positives = 533/837 (63%), Gaps = 35/837 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V+L + M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 9 RIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y ++ MAQDF+ RY L+ GHGNFGS+D D AAMRYTE R
Sbjct: 69 ARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEAR 128
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI+++T+++ N+D+++ EP++LPAR+P LL+NG+SGIAVGM TNIPPH
Sbjct: 129 MSRIAVEML-RDINKNTIDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGMTTNIPPH 187
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ + L+ +P+ T +EL++ +PGPDFPTGG++MG G+L AY TG+G I VR K
Sbjct: 188 NLKEVISGIHMLMKDPDVTTRELMKAIPGPDFPTGGILMGRSGVLHAYETGKGNIVVRAK 247
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E KS R +++ EIPY NK+ LV+KIAEL +K +DGI+ IRDESD+SGMRI
Sbjct: 248 TEIET--EKSGRERIVVTEIPYLVNKAELVQKIAELARDKVIDGITGIRDESDQSGMRIT 305
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+V+N+L++ T +QS+F+ NMV I+DG PK + LKE+LQ +L + V+ R
Sbjct: 306 IDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKEMLQHYLAHQEDVITR 365
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + + R HI+EG+ + LD++D ++ ++R + S+ A A L FKL ++QA AI
Sbjct: 366 RTKFDLDKAEARAHILEGLRIALDHIDEIVNLIRNSESSDIAKAGLISRFKLDDRQAQAI 425
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K E + L+ +I +++L+ + I Q+I E+++++ RF R
Sbjct: 426 LDMRLVRLTGLERDKVEAEYQDLLVKIADYKDILAKPERIDQIIYDELLDIQKRFGDKRR 485
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + ++ L+D D+I ++LL ++ +GY+KRM + F QNRG G ++ D
Sbjct: 486 TQITASEVVTLEDEDLIEEQKVLLTLTHQGYIKRMLIDDFKTQNRGGRGIKGMGVQKGDF 545
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI--I 680
+ + HD++L+F+++G VY +AY+IPE RNA G P+V +L L GE I ++ +
Sbjct: 546 IEHLLYSSTHDYLLFFTNKGKVYMKKAYEIPEFGRNAKGLPIVNLLQLEKGEHIQTMVNV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P S+ D + +T G +KK L+ F +IRT G+IA+ L GDEL V +
Sbjct: 606 PKSDNDEDGYAFFITKLGTVKKTKLSEFENIRTNGLIALTLKDGDELSNVLATDGSQNIF 665
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+A+ G + + +RS+ R+ G + L+DGD + I+ A ED
Sbjct: 666 IATHQGYAVTFNEKDVRSMGRSAAGVRGINLRDGDYVVGSGILKA----------EDE-- 713
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
+L +SE G+GKR P + + G+ K ++ LA V VV
Sbjct: 714 ---------VLTISEKGYGKRTPATEYPVKGRGGKGIQTAKIGQKNGPLAGVAVV----- 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
DG+SD ++L++ G + R K D+S R GV L++++ + S +++ E
Sbjct: 760 -DGKSD--IMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVDAGNSVASLAVVPAEE 813
>gi|406661841|ref|ZP_11069952.1| DNA gyrase subunit A [Cecembia lonarensis LW9]
gi|405554292|gb|EKB49401.1| DNA gyrase subunit A [Cecembia lonarensis LW9]
Length = 827
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/839 (43%), Positives = 536/839 (63%), Gaps = 37/839 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+P+ + +EM G+YI YSMSV++ RALPDVRDGLKPVHRRILF M ELG+ KPFKK A
Sbjct: 9 IIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGVLHNKPFKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEVLGK+HPHGD+AVY+++VRMAQ +SLRYPL+ G GNFGSID D AAMRYTE RL
Sbjct: 69 RIVGEVLGKYHPHGDSAVYETMVRMAQPWSLRYPLVDGQGNFGSIDGDNPAAMRYTEARL 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ ++E +L+ DI+++TV+F NFD+S KEP +LPA++P LLLNGASGIAVGMATN+ PHN
Sbjct: 129 KRIAEELLI-DINKETVDFQLNFDDSLKEPVVLPAKIPALLLNGASGIAVGMATNMAPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD + A I N + T+ EL+EY+ PDFPTGG+I G G+ A+ TGRGRI +RGK
Sbjct: 188 LGEVVDGIIAFIDNRDITISELMEYIVAPDFPTGGIIYGYNGVKAAFETGRGRIILRGKA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E DS + +II EIPY NK+ ++EK A+L+ K ++GIS IRDESDR GMRIV
Sbjct: 248 DIETKDSGKE--SIIISEIPYLVNKANMIEKTAQLITEKKIEGISAIRDESDRQGMRIVY 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P++V+N+LY+ T LQ+SFS N V ++ G+P+ + LK+++ +++ R VV RR
Sbjct: 306 ELKRDAIPNVVLNNLYKQTQLQTSFSVNNVALVKGRPQTLNLKDMIFHYVNHRHEVVVRR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
++L + ++R HI+EG ++ LDNLD VI ++R + TA L + F LSE QA AIL
Sbjct: 366 TEYELKEAEKRAHILEGYLIALDNLDEVIALIRGSRDPETARNGLIERFGLSEIQARAIL 425
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT +ER+K +E K +M I +++LSS + +Q+I+ E+ E+K+R++ R +
Sbjct: 426 DMRLQRLTGMEREKIQEEYKEIMAFIEDCKDILSSEERRMQIIKDELAEIKDRYNDSRRT 485
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
++E ++ D+IPN+E+++ +S +GYVKR + Q+RG +G + +D
Sbjct: 486 VIE-HNAEDFSYEDMIPNEEVVITVSHQGYVKRTLLAEYRTQSRGGVGSRGATTKDDDWT 544
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
H+++L F+D G ++ + Y IPE ++ + G P+ ++++ ++I SII V
Sbjct: 545 EYLFTASTHNYLLIFTDHGKLFWLKTYAIPEGSKTSKGRPIQNLINIEADDKIRSIIQVG 604
Query: 683 ----SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
++ + +LVM+T G IKK +L +S R+ GIIA+ + D+L V D
Sbjct: 605 DLNDEDYINNNYLVMVTRQGIIKKTTLEQYSRPRSNGIIALNIREDDQLLRVDMTNGDSH 664
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPED 797
+ +A+++G I +R + R G A+ L + D + M + AA ED
Sbjct: 665 IIIAAKSGRAIHFHESTVRPMGRTATGVKAITLSNVNDSVVGM--VCAA--------RED 714
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+ LL VSE G+GKR PL +R NR G + ++ + +
Sbjct: 715 AS----------LLVVSEKGYGKRSPLDEYR--ITNRGGKGVKAMNITEKTGDL----VA 758
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ E +SD+ ++++++SG R V D+ + R +GV L++L I S I E
Sbjct: 759 IKEVVDSDD-LMIINKSGITIRTPVSDLRVMGRATQGVRLIKLNEGDAISSVEKIEKDE 816
>gi|420499814|ref|ZP_14998366.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-26]
gi|393149048|gb|EJC49360.1| DNA gyrase, A subunit [Helicobacter pylori Hp P-26]
Length = 828
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/823 (43%), Positives = 541/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP++LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPNILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKTGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDKGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|347524529|ref|YP_004831277.1| DNA gyrase subunit A [Lactobacillus ruminis ATCC 27782]
gi|345283488|gb|AEN77341.1| DNA gyrase subunit A [Lactobacillus ruminis ATCC 27782]
Length = 847
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/857 (41%), Positives = 536/857 (62%), Gaps = 41/857 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V+L + M S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP+KK
Sbjct: 7 RISNVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKS 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 67 ARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEAR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DTV+F PN+DE+++EP +LP+R P LL+NGA+GIAVGM TNIPPH
Sbjct: 127 MSKIALEML-RDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPH 185
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ L L+ NP+AT EL+E +PGPDFPTG ++MG GI AY TG G +T+R K
Sbjct: 186 NLREVISGLHLLMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAK 245
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
++E + R +I+ EIPY NK+ L+ +IA+L K +DGI+DI DESDR GMRI
Sbjct: 246 VDIEEQSNGKSR--IIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRIT 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R PS+V+N+LY+LT +QSSF+ NM+ I+DG P+ +GLK++LQ +L + +V+ R
Sbjct: 304 IDIRRDVSPSVVLNNLYKLTLMQSSFTFNMLAIVDGTPRVLGLKQILQYYLKHQENVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + + R HI+EG+ + LD++D +I I+R + S A L +E++LS+KQA AI
Sbjct: 364 RTAFDLKKAQARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K +E I +++L+ + + +I QE++E++ +F R
Sbjct: 424 LDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVHSIIYQELLEIQEKFGDDRR 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + ++D D+I + +++A++ GY+KR+ + F Q RG G + +D
Sbjct: 484 TELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKAQRRGGRGVQGMGVHDDDF 543
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD VL+F++ G VY + Y++PE R A G P++ +L LS+GE+I ++I V
Sbjct: 544 IEHLITTSTHDDVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLDLSEGEKIQTVINV 603
Query: 683 S-EFAGD-QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
E D FL T+ G +K+ S+ F +IR G+ AI L GDEL V + +
Sbjct: 604 DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDELLNVSITDGNQNII 663
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + G + S + +R + R G +RL+D D D++ P+ S
Sbjct: 664 IGTHGGYAVSFSENAVRQMGRAASGVRGIRLRDDDYAIGSDVLK----------PD---S 710
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGF 856
NV +SE G+GK+ P S + P+ G G K S LA + +V
Sbjct: 711 NV--------FVISEKGYGKQTPASDY---PIKGRGGKGIKTSNITEKNGSLAGLTIV-- 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
DG D +++++ G + R V+ +S R GV L+ L+ K+ + + + +
Sbjct: 758 ----DGTED--IMVITDKGVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQ 811
Query: 917 PETDLFLPSTSDKLATE 933
PE D ++D+ +TE
Sbjct: 812 PEADDEENLSNDENSTE 828
>gi|244538888|dbj|BAH82931.1| DNA gyrase subunit A [Candidatus Ishikawaella capsulata Mpkobe]
Length = 855
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/849 (41%), Positives = 537/849 (63%), Gaps = 65/849 (7%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+ V + EE+T SY++Y+MSV++ RALPDVRDGLKPVHRR+LFAM+EL KP+KK AR
Sbjct: 17 ISVNVEEELTNSYLSYAMSVIVSRALPDVRDGLKPVHRRVLFAMYELSNLYNKPYKKSAR 76
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD++VRMAQ FSLRY LI G GNFGSID D AAAMRYTE R+
Sbjct: 77 IVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYILIDGQGNFGSIDGDSAAAMRYTEIRMS 136
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LL D+++DTVNF+ N+D S+K P +LP+++P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 137 KIAHE-LLTDLEKDTVNFISNYDGSEKIPEVLPSQIPNLLINGSSGIAVGMATNIPPHNL 195
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+++ A I + T+++L+EY+PGPDFPT +I G G+ +AYRTGRG+I +R E
Sbjct: 196 TEVINACLAYIEDHNITVKKLMEYLPGPDFPTAAIINGQNGVEEAYRTGRGKIYIRAFVE 255
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+ + D+K+KR +II EIPYQ NK+ L+E+IAELV++K +DGIS +RDESD+ G+RIV+E
Sbjct: 256 IAI-DNKTKREIIIIHEIPYQVNKARLIERIAELVKDKRVDGISTLRDESDKDGLRIVLE 314
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
+KR A +V+N+LY LT LQ SF NMV + GQPK M LKE+L+AF+ R +V RR
Sbjct: 315 VKRDAVAQVVLNNLYSLTQLQISFGINMVALHHGQPKTMTLKEILEAFICHRREIVTRRT 374
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------------- 488
F+L + +ER H+VEG+++ L+NLD++I +R + S S A+
Sbjct: 375 VFELHKARERIHVVEGLIIALENLDQIIYFIRNSSSLSEIKIAILTKKWNLGKLIQITHH 434
Query: 489 ------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQIL 530
+++ L+E Q AILDM L++LT LE KK ++E +TL++QI
Sbjct: 435 SKSFNKNFKYFCEKSHIHDNKYTLTEHQVQAILDMRLQKLTGLEHKKLIEEYETLVKQIN 494
Query: 531 KLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISE 590
L +L +++++I +++ ++N+F R + + + + + + ++I ++++++ +S
Sbjct: 495 NLTHVLQHPDHLMKIICKDLKIIRNQFGDARRTEI-NINGIDIKNEELIHHEDVVVTLSN 553
Query: 591 KGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650
+GYVK + Q RG GKS +++ D + +V HD +L FS +G +Y + Y
Sbjct: 554 QGYVKYQPLTDYEAQRRGGKGKSAAQIKEEDFIDSLLVANTHDTILCFSSKGRLYWMKVY 613
Query: 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710
++PE +R + G P+V +L L++ ERIT+I+PV ++ ++M T G +KK ++N FS
Sbjct: 614 QLPEASRGSRGRPIVNLLPLAEKERITTILPVYKYEEGLNILMATAKGIVKKTAINEFSR 673
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770
R GIIAI+L DEL V +D + + S G V+ S +R++ R G ++
Sbjct: 674 PRNIGIIAIKLHGDDELIGVALTKGNDEIMLFSSAGKVVRFSETTVRNMGRAASGVCGIK 733
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKL 830
L D + S+ I+P KG +L V+++G+GKR S +
Sbjct: 734 LAKNDLVVSL-IVPRK----------------KGE----ILTVTQNGYGKRTANSEYPTK 772
Query: 831 PLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQAR 890
G+I K + + L V+G D +Q+++++ +GT+ R +V ++SI R
Sbjct: 773 SRATQGVISIKVTKRNGL----VIGAIQVVDS---DQIIIITNAGTLVRTRVSEVSIVGR 825
Query: 891 YARGVILMR 899
+GVIL+R
Sbjct: 826 NTQGVILIR 834
>gi|420519660|ref|ZP_15018102.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-5b]
gi|393126724|gb|EJC27172.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-5b]
Length = 828
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKTGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG + LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYSIALDNIDEIVRLIKTSPSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKISGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCCTND- 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N+
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDKGDELVGAKVVDNNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D + D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDEKLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|418953122|ref|ZP_13505128.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-189]
gi|375375639|gb|EHS79209.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus IS-189]
Length = 886
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/821 (41%), Positives = 531/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T L +SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLHTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|420425388|ref|ZP_14924449.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-5]
gi|393041806|gb|EJB42820.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-5]
Length = 828
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEIKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
Length = 830
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/848 (41%), Positives = 529/848 (62%), Gaps = 31/848 (3%)
Query: 60 LASKDEERNGN-GSVATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLK 118
+A D + N G + + I PV + EEM SYI Y+MSV++GRALPD RDGLK
Sbjct: 1 MAENDNYNDDNSGEIDVQETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLK 60
Query: 119 PVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPL 178
PVHRRIL++M E G++ KP+KK ARVVG+VLGKFHPHGD AVYDSLVRM Q+FS+RYPL
Sbjct: 61 PVHRRILYSMKEAGITYDKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPL 120
Query: 179 IRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPA 238
+ G GNFGSID D AAAMRYTE R+E +SE ML+ DID++TV F PN+D + EP++LPA
Sbjct: 121 VDGQGNFGSIDGDSAAAMRYTEVRMEKISEEMLV-DIDKETVPFQPNYDGALTEPTVLPA 179
Query: 239 RLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG 298
+LP L++NG++GIAVGMATNIPPHNL E+ D L +I NP+ ++ EL + GPDFPT G
Sbjct: 180 KLPNLIVNGSTGIAVGMATNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAG 239
Query: 299 LIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAEL 358
I+G GI AY TGRGRI +R ++E + + R +++ E+PYQ NK+ L+E IA L
Sbjct: 240 TILGTEGIKSAYETGRGRIKIRSVADIEEMKNDKHR--IVVSELPYQVNKANLIESIASL 297
Query: 359 VENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG 418
V +K + GISD+RDESDR G+RIVIEL R +P++++N LY+ T LQ ++ + ++DG
Sbjct: 298 VRDKKIQGISDLRDESDREGIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVDG 357
Query: 419 QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA 478
PK + L E+LQ +L+ R V+++R++++L + +ER HI++G+ + L NLD VI +R +
Sbjct: 358 VPKVLNLYELLQIYLNHRMDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNS 417
Query: 479 PSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSS 538
+ A L ++F+L E QA AILDM L+ LT +E+ K E L+E+I L+E+++S
Sbjct: 418 KTTPEAKEGLIEKFQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIAS 477
Query: 539 RKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMK 598
+I+ E+ ELK ++ R + ++ +D +L + D+IP +++L+ I+ GY+KR+
Sbjct: 478 DSRKYNIIKDELTELKENYADERRTDIQSSDE-ELSEEDLIPEEDVLITITNSGYIKRLP 536
Query: 599 PNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658
T++ Q+RG G + ++ +D + D V D++L F+++G V + Y+IP+ ++
Sbjct: 537 VTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQGSKQ 596
Query: 659 AAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIA 718
+ G LV + L + E ++S+I V EF+ D L+M T G +KK L+ F + + +G+IA
Sbjct: 597 SRGKALVNLFELENDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSFKTRKKSGLIA 656
Query: 719 IQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMA 778
I L DEL V + + + S G I + +R + R +G +RL D++
Sbjct: 657 INLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLNPDDRII 716
Query: 779 SMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLI 838
SMD I N K LL ++++G+GKR +R++ G+
Sbjct: 717 SMDTIS-------------DDENAK------LLTITQNGYGKRTKFEEYRRMNRGGRGVT 757
Query: 839 GYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+ + + VV D D+ +V+ S G V RI V+DI +Q R +GV +M
Sbjct: 758 TIQMTPRNGP----VVNVKTVRD---DDDIVVTSYQGLVIRIPVKDIRVQGRNTQGVKIM 810
Query: 899 RLELSGKI 906
+ + K+
Sbjct: 811 NMRENDKV 818
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 688 DQFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
+ L+ +T +GYIK++ + +S G+ I + D ++ V + D + + +
Sbjct: 520 EDVLITITNSGYIKRLPVTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNK 579
Query: 746 GMVILSSCDIIRSLSRNTRGSVAM---RLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
G V I S+ +RG + L++ + ++SM V
Sbjct: 580 GRVNCKKVYEIPQGSKQSRGKALVNLFELENDEAVSSM-------------------ITV 620
Query: 803 KGSSGPW-LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
K S W LL ++ G K+ PLSSF+ + GLI + D L V + D
Sbjct: 621 KEFSDDWNLLMATKYGTVKKTPLSSFK--TRKKSGLIAINLNENDELVNVILT------D 672
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
G++D ++LVS +G R ++ R A+GV +RL +I S IS E
Sbjct: 673 GQND--IILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLNPDDRIISMDTISDDE 725
>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
Length = 815
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/832 (41%), Positives = 534/832 (64%), Gaps = 36/832 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
E+ S++ YSMSV++ RALPDVRDGLKPVHRRIL+A ++LGL+ KP+KK A VVGEV+
Sbjct: 16 EIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYKKSAFVVGEVMA 75
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+A Y ++VR+AQDF+ RYPL+ G GNFGSID D AAAMRYTE R+ ++ + L
Sbjct: 76 KYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMRYTEARMSKIA-SEL 134
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
L DI++DTV+ N+D +++EP +LPAR+P LL+NG+SGIAVGMATNIPPHNLGE++D +
Sbjct: 135 LRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGV 194
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
AL N E T+ EL+ + GPDFPTG ++G GI+ AY TGRG + +RGKTE+E + +
Sbjct: 195 IALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVIMRGKTEIEQMKNG 254
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+R +II EIPYQ NK+ LVEKIAEL +K ++G++D+RDES+ G+RIVIEL+R +
Sbjct: 255 KER--IIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIRIVIELRRDVNS 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++++N+LY+LT LQSSF NM+ +++G PK + LKEVL +L+ + VV RR +F L +
Sbjct: 313 NVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVVVRRTKFDLKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ + LDN+DR+I ++R + + A A L D+F L+E QA AILDM L+RLT
Sbjct: 373 QARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER K +E LME I LE++L+ + ++Q+++ E++E+K +F R S++ +
Sbjct: 433 GLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVD 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA--MSDFIVC 629
Q+++ D+I +++++ +S Y+KR+ +T+ Q RG G+ V + ND ++ + C
Sbjct: 493 QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRG--GRGVNGMTTNDEDNVAYMLSC 550
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD- 688
HDH+L+F+D+G VY+ + Y+I + +R + G P++ +L + E++ SII +S+ +
Sbjct: 551 STHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEG 610
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
L+ T G IKK L ++SI G IA++L D L V+ T+D + + + NG
Sbjct: 611 TNLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQA 670
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I + + +R++ R +RG + L D + M+++ +
Sbjct: 671 IRINAEKVRTMGRVSRGVKGITLSPDDYVVGMEVVDES---------------------K 709
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L V+E+G GK + F +NR G G K + + V S+A +E +
Sbjct: 710 KILTVTENGIGKISKSTEFN--VINRGGK-GVKVAKVTKKTGKIVAVKSIA----GNEDL 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
++++ G + RI V IS R A GV ++ L K+ + +L + E D
Sbjct: 763 MIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEESYED 814
>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
Length = 838
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/814 (41%), Positives = 519/814 (63%), Gaps = 37/814 (4%)
Query: 93 MTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGK 152
M S++ YSM+V++ RALPDVRDGLKPVHRRIL+ MHE GL+ + ++KCA VG VLG+
Sbjct: 15 MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74
Query: 153 FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLL 212
+HPHGD +VYD+LVR+AQ FSLRYPL+ GHGNFGS+D DP AA RYTE R+ +S ML
Sbjct: 75 YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEARMAKMSLNML- 133
Query: 213 ADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLC 272
DI +DTV+F PN+D+ +EP +LP+R P +L NG+ GIAVGMATNIPPHNL E+++ +
Sbjct: 134 TDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIPPHNLHEVIEGMK 193
Query: 273 ALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKS 332
++ NP+ TL EL++ + GPDFPTGG+IMG GI AY TGRG+I +R KT +E +
Sbjct: 194 IVMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILRSKTSIEEIKG-- 251
Query: 333 KRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392
R +I+ EIPY NK+ LVE IA LV++K +DGI D+RDE+ R GMRIVIELK+ A+
Sbjct: 252 -RNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIVIELKKDANAQ 310
Query: 393 IVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK 452
+V+N L+ LT LQ S ++ ++ G PK + LK++LQ ++DF+ V+ RR F L + K
Sbjct: 311 VVLNKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRRRTEFDLKKAK 370
Query: 453 ERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTM 512
ER HI++G+++ LDN+D VI I++ + + L F LS+ QA+ I M L RLT
Sbjct: 371 EREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFGLSDIQAEHIAQMTLGRLTG 430
Query: 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQ 572
+ER+K +DE + + ++ E++L++ + +L +I +EV ++ ++ R + +E+ SG+
Sbjct: 431 MERQKILDELEEITAKVADYEDILANHQRVLDIIIEEVEAIQEKYGDERRTQIENV-SGE 489
Query: 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAH 632
+D D+IP +E ++ + GY+KRM + + QNRG G + K R +D +++ VC +H
Sbjct: 490 VDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQREDDCVTEMSVCSSH 549
Query: 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLV 692
D++L+ + +G Y + Y++PE ++ + G + +L LSD I ++I V +F D+++V
Sbjct: 550 DNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLLELSDDNLIAAMIKVEDFDDDKYIV 609
Query: 693 MLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSS 752
M+T G IK+ L+ + ++R G+IAI L GDE+ VR ++ + +A+ NGM I S
Sbjct: 610 MVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGDEIAGVRLTEGNNELLIATHNGMAIRIS 669
Query: 753 CDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLF 812
+ +R +SR G A++L+ D + SM I G +L
Sbjct: 670 ENDVRVMSRTAHGVRAIKLRGDDYVVSMARI---------------------REGASVLT 708
Query: 813 VSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVS 872
VSE+G G+RV L S+ G++ YK V G + ++ D+ ++++S
Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGVLNYKNGD--------VCGIKVVDE---DDDIIMIS 757
Query: 873 QSGTVNRIKVRDISIQARYARGVILMRLELSGKI 906
G V R++ DIS+ RY+RGV LM++ K+
Sbjct: 758 SDGIVIRLRACDISMMGRYSRGVRLMKVTGDNKV 791
>gi|420438722|ref|ZP_14937696.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-29]
gi|393056322|gb|EJB57234.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-29]
Length = 828
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/822 (43%), Positives = 540/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS TA AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKVRAHILEGYLIALDNIDEIVRLIKTSPSPETAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSHKGYVKRVDLKAYEKQNRGGRGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG ++L + D + +I +
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
DS+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
Length = 827
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/823 (43%), Positives = 539/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI+++Y+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIESYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M+++IS KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSISYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T G +K+ +L+ F S R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKKGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG +RL + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVI------------- 708
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
G LL VSE+G GK+ ++R+ G+IG + + + L +V V
Sbjct: 709 -------SDDGNKLLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
Length = 927
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/907 (42%), Positives = 539/907 (59%), Gaps = 79/907 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGSID DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LL DID+DTV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKISEE-LLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD ALI +P TL E+++ +PGPDFPTGG+I+G+ GI AY TGRG I +R K
Sbjct: 195 LGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EKIAELV +K +DG+SD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R+A A A L
Sbjct: 373 TKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAVDIAPLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I ++L+
Sbjct: 433 LIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F+TPR ++ S +D D+I +EM++ +S GY+KR+
Sbjct: 493 SRSRIMGIVKDELNALREVFATPRRTVF-GFGSADMDSEDLIAPEEMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGD--QFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ + D + VM TM G +++ L+ F +
Sbjct: 612 QSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLK 772
G IA++ GDE+ V CT D V + + NG I D+ + R++ G + +
Sbjct: 672 GKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGRHSMGVRGINMG 731
Query: 773 DGDKMASMDIIPAALHKDLERTP-----------------------EDSHSNVK------ 803
D DK+ SM I+ ER+ E+S + V
Sbjct: 732 DSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDEESEATVTELTDER 791
Query: 804 ----GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV--FVVGFS 857
+ LL VSE G+GKR FR ++ G G + + + A + V F
Sbjct: 792 YMELSAHEQMLLTVSEFGYGKRSSSYDFR---ISGRGGKGIRATDPSKTAEIGKLVAAFP 848
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+ E+ +Q++LVS G + R+ V I I R +GV + K+ S IS EP
Sbjct: 849 V----EAQDQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERIS--EP 902
Query: 918 ETDLFLP 924
E + P
Sbjct: 903 EVNASEP 909
>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
JV20]
gi|419535862|ref|ZP_14075353.1| DNA gyrase subunit A [Campylobacter coli 111-3]
gi|419538120|ref|ZP_14077482.1| DNA gyrase subunit A [Campylobacter coli 90-3]
gi|419541157|ref|ZP_14080374.1| DNA gyrase subunit A [Campylobacter coli Z163]
gi|419546180|ref|ZP_14084941.1| DNA gyrase subunit A [Campylobacter coli 2680]
gi|419549238|ref|ZP_14087841.1| DNA gyrase subunit A [Campylobacter coli 2685]
gi|419552345|ref|ZP_14090655.1| DNA gyrase subunit A [Campylobacter coli 2692]
gi|419555764|ref|ZP_14093772.1| DNA gyrase subunit A [Campylobacter coli 84-2]
gi|419560300|ref|ZP_14097944.1| DNA gyrase subunit A [Campylobacter coli 86119]
gi|419562286|ref|ZP_14099802.1| DNA gyrase subunit A [Campylobacter coli 1091]
gi|419565131|ref|ZP_14102484.1| DNA gyrase subunit A [Campylobacter coli 1098]
gi|419566453|ref|ZP_14103713.1| DNA gyrase subunit A [Campylobacter coli 1148]
gi|419570949|ref|ZP_14107962.1| DNA gyrase subunit A [Campylobacter coli 7--1]
gi|419572551|ref|ZP_14109459.1| DNA gyrase subunit A [Campylobacter coli 132-6]
gi|419574378|ref|ZP_14111128.1| DNA gyrase subunit A [Campylobacter coli 1891]
gi|419577128|ref|ZP_14113688.1| DNA gyrase subunit A [Campylobacter coli 59-2]
gi|419583209|ref|ZP_14119396.1| DNA gyrase subunit A [Campylobacter coli 1961]
gi|419593600|ref|ZP_14128813.1| DNA gyrase subunit A [Campylobacter coli LMG 9854]
gi|419595166|ref|ZP_14130278.1| DNA gyrase subunit A [Campylobacter coli LMG 23336]
gi|419596192|ref|ZP_14131200.1| DNA gyrase subunit A [Campylobacter coli LMG 23341]
gi|419600833|ref|ZP_14135577.1| DNA gyrase subunit A [Campylobacter coli LMG 23344]
gi|419603186|ref|ZP_14137745.1| DNA gyrase subunit A [Campylobacter coli 151-9]
gi|419604401|ref|ZP_14138868.1| DNA gyrase subunit A [Campylobacter coli LMG 9853]
gi|419616728|ref|ZP_14150368.1| DNA gyrase subunit A [Campylobacter coli Z156]
gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
JV20]
gi|380515076|gb|EIA41261.1| DNA gyrase subunit A [Campylobacter coli Z163]
gi|380518936|gb|EIA45025.1| DNA gyrase subunit A [Campylobacter coli 90-3]
gi|380519599|gb|EIA45666.1| DNA gyrase subunit A [Campylobacter coli 111-3]
gi|380522888|gb|EIA48551.1| DNA gyrase subunit A [Campylobacter coli 2680]
gi|380526377|gb|EIA51841.1| DNA gyrase subunit A [Campylobacter coli 2685]
gi|380531844|gb|EIA56852.1| DNA gyrase subunit A [Campylobacter coli 2692]
gi|380535668|gb|EIA60358.1| DNA gyrase subunit A [Campylobacter coli 84-2]
gi|380537249|gb|EIA61820.1| DNA gyrase subunit A [Campylobacter coli 86119]
gi|380540231|gb|EIA64545.1| DNA gyrase subunit A [Campylobacter coli 1098]
gi|380541308|gb|EIA65578.1| DNA gyrase subunit A [Campylobacter coli 1091]
gi|380544866|gb|EIA68871.1| DNA gyrase subunit A [Campylobacter coli 7--1]
gi|380546685|gb|EIA70626.1| DNA gyrase subunit A [Campylobacter coli 1148]
gi|380549697|gb|EIA73461.1| DNA gyrase subunit A [Campylobacter coli 1891]
gi|380550593|gb|EIA74237.1| DNA gyrase subunit A [Campylobacter coli 132-6]
gi|380557982|gb|EIA81175.1| DNA gyrase subunit A [Campylobacter coli 59-2]
gi|380563860|gb|EIA86687.1| DNA gyrase subunit A [Campylobacter coli 1961]
gi|380569703|gb|EIA92139.1| DNA gyrase subunit A [Campylobacter coli LMG 9854]
gi|380574264|gb|EIA96371.1| DNA gyrase subunit A [Campylobacter coli LMG 23336]
gi|380576801|gb|EIA98848.1| DNA gyrase subunit A [Campylobacter coli LMG 23341]
gi|380579355|gb|EIB01153.1| DNA gyrase subunit A [Campylobacter coli 151-9]
gi|380580130|gb|EIB01897.1| DNA gyrase subunit A [Campylobacter coli LMG 9853]
gi|380582555|gb|EIB04193.1| DNA gyrase subunit A [Campylobacter coli LMG 23344]
gi|380595149|gb|EIB15904.1| DNA gyrase subunit A [Campylobacter coli Z156]
Length = 855
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/846 (42%), Positives = 534/846 (63%), Gaps = 58/846 (6%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+++ + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM++LG+ SR +KK AR+V
Sbjct: 14 IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD+LVRMAQDFS+RYP I G GNFGSID D AAAMRYTE R+ L
Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTIL 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LL DID+DTV+FVPN+D+S EP +LPAR+P LLLNG+SGIAVGMATNIPPH+L E
Sbjct: 134 AEE-LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
LVD L L+ + +A+L++L++++ GPDFPTGG+I G GI++AYRTGRGR+ +R KT +E
Sbjct: 193 LVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
KS + ++I E+PYQTNK+ L+E+IAELV+ K ++GIS++RDESDR G+R+VIELK
Sbjct: 253 ---KKSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELK 309
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A IV+N+L++ T ++S+F M+ I + +PK L E+L FL+ R +V+ RR F
Sbjct: 310 REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 369
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LDN+D VI +++ +P N+TA +L +F L+E QA+AILDM
Sbjct: 370 ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMK 429
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RLT LER+K +E LM++I +L+E+L S + LI E+ E+K++F PR++ +E
Sbjct: 430 LGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIE 489
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D +D D+IPN+ M++ I+ +GY+KR+ + Q RG GK +D + F
Sbjct: 490 -DDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
HD +++ +DRG +Y + YKIPE +R A G +V +++L E+I +IIP ++F
Sbjct: 549 FTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
++ L T NG +K+ +L+ + +IR+ G+ AI L DEL D+ + G
Sbjct: 609 ENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDE----NEETG 664
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
++ D D + E T D + ++
Sbjct: 665 LL------------------------DDDSLND------------ENTNSDENL-IESIK 687
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGESD 865
G L V++ G + PL+ R++ G+ KF + D L V+ E+D
Sbjct: 688 GKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVI--------END 739
Query: 866 EQVVL-VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLP 924
EQ +L +S G R + +Q+R +GVI M+ L+ K + + + + DL
Sbjct: 740 EQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMK--LTDKTKELISVVIVDESMDLMAL 797
Query: 925 STSDKL 930
++S K+
Sbjct: 798 TSSGKM 803
>gi|374299554|ref|YP_005051193.1| DNA gyrase subunit A [Desulfovibrio africanus str. Walvis Bay]
gi|332552490|gb|EGJ49534.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
Length = 827
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/826 (41%), Positives = 526/826 (63%), Gaps = 19/826 (2%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + E+ SY+ YS+SV++GRA+PDVRDGLKPVHRRIL+AMHELG S + +KK ARVV
Sbjct: 7 VSIKSEIEKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNSYNRAYKKSARVV 66
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD +VYD+LVRMAQDFS+R ++ G GNFGSID D AAAMRYTE R+ L
Sbjct: 67 GDVIGKYHPHGDQSVYDALVRMAQDFSMRDLVVDGQGNFGSIDGDAAAAMRYTEVRMSRL 126
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ + LADI+++TV+F PN+D S +EP++LP ++P LLLNG SGIAVGMATNIPPHNLGE
Sbjct: 127 A-SEFLADIEKETVDFRPNYDNSLQEPAVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 185
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L+D L+ NPE T ++L ++ GPDFPT G G++DAY TGRG I +RG VE
Sbjct: 186 LMDATLHLLDNPECTPRDLTAFVKGPDFPTAASCYGGRGLMDAYETGRGSIKIRGTVAVE 245
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ K R ++I EIP+ NKS LVEKIA L+ +K +DG+SD+RDESDR G+RIV++LK
Sbjct: 246 --EKKGGRESIVISEIPFALNKSSLVEKIAALINDKRIDGVSDLRDESDRKGIRIVLDLK 303
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+GA P I++N LY+ T L+SSF NM+ ++ +P + LK +L FL R V+ RR RF
Sbjct: 304 KGAIPDIIINMLYKFTPLESSFGINMMAVVGSRPMLLNLKSILDYFLQHRREVILRRTRF 363
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
L + ++R HI+EG+++ LDN+D V+RI+R + + A + L + F LS+ Q+ AILDM
Sbjct: 364 DLDKAEKRAHILEGLLIALDNIDEVVRIIRSSATALEAKSRLMERFGLSDVQSQAILDMR 423
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RL LE++K +E L+++I L+ +L++ + + +I +E+ E++ F+TPR +++
Sbjct: 424 LQRLVNLEQEKLREEFAELLKKIEYLKSILTNEEVLKGVIREELSEVRRIFATPRKTVIL 483
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
+ D +D D+I ++E++L +S +GY+KR +++ Q RG G S +D + F
Sbjct: 484 EQDLDSIDIEDLIADEEVVLTLSRRGYIKRTTLDSYQQQKRGGKGISGVLTGDDDFVHTF 543
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
H ++L F++RG ++ + +++PE R A G+ + +L L E +T+ + V EFA
Sbjct: 544 CSTSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTTALTVREFA 603
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ + +T G IKK S +L++++R++G+ A+ L DEL VR D + + + G
Sbjct: 604 EHNYFMFVTKRGMIKKTSASLYANVRSSGVRAVNLRDDDELIMVREINGRDELILVTAEG 663
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
I + IR + R G + L+ D++ + ++ P++ + G
Sbjct: 664 TSIRFTSAEIRPIGRGATGVKGIALRGSDEVVAGVVV----------RPDEEAVDASGED 713
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE 866
+L +SE G+GKR P++ +R G+I K + + VV + ES E
Sbjct: 714 RRLVLTISEKGYGKRTPVNQYRGQSRGGKGIINMKVTPKTGRVVGAVVTY------ESKE 767
Query: 867 QVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+V+L++ V R+ DIS+ R +GV L+R+E ++ + LI
Sbjct: 768 EVILLTSGNKVIRLSSEDISVIGRATQGVRLVRMEEEDRVAAFDLI 813
>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
Length = 848
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/861 (42%), Positives = 526/861 (61%), Gaps = 59/861 (6%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V + +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR L+AM+++G KP+KK AR
Sbjct: 9 VAVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
VVG+V+GK+HPHGD AVYD++VRMAQDFSLRY L+ G GNFGS+D D AAMRYTE R++
Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMK 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
L+ LLAD++++TV F PN+DES EP++LPA+ P LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 QLTHE-LLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
GE++D + ALIHNP + +ELLE +PGPDFPTGG I G GI+D Y TGRG I +R K
Sbjct: 188 GEIIDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQIRAKAH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
VE K R +++ EIPYQ NK+ L+ IAELV+ K ++GISD+RDESDR GMRIVI+
Sbjct: 248 VE-NSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVID 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LK+ + +++N LY+ T +Q+SF NM+ I+ +PK M L E++ F++ R +V +R
Sbjct: 307 LKKDENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREMVTKRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS------------------- 485
F+L + + R HI+EG+ + LD LD VI ++RE+ + A
Sbjct: 367 LFELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNL 426
Query: 486 ---AALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
A + +LSE QA AIL+M L+RLT LER K + E + ++ I +L+E+L S I
Sbjct: 427 PRPAGYEKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAEI 486
Query: 543 LQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKP 599
+++I E+ E+K RF R + + Q DI D I + EM++ +S GY+KR
Sbjct: 487 MKIIVGELTEIKERFGDKRRTEI----VHQTADISLEDTIEDAEMVVTVSHTGYIKRSAV 542
Query: 600 NTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659
+ + Q RG GK+ K R D + + D +L+FSD G VY + Y+IPE +R
Sbjct: 543 DLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEGSRTT 602
Query: 660 AGTPLVQILSLSDGERITSIIPVSEFA-GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIA 718
G +V ++++ +GE+IT+I+PV + D +L+M T NG +KK L + +IRTTGI A
Sbjct: 603 KGKAVVNLVNVQEGEKITAILPVKDLNREDLYLLMATRNGVVKKTPLVEYLNIRTTGINA 662
Query: 719 IQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMA 778
+ L GD+L V V +AS++G I R + R TRG M L+ D++
Sbjct: 663 VNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPMGRVTRGVRGMNLEARDEVI 722
Query: 779 SMDII-PAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
M+++ P A +G + ++E+G GKR L +R GL
Sbjct: 723 GMEVVDPTA-------------------TGSTIFTLTENGFGKRTDLDEYRGQSRGGKGL 763
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
I K + + L VVG D + Q+++++ G + R+ V S+ R +GV +
Sbjct: 764 ITIKTTTRNGL----VVGVMQVND---ENQLMVITDQGKILRVPVAGFSVIGRNTQGVRV 816
Query: 898 MRLELSGKIQSASLISVTEPE 918
M E KI + + ++ + E
Sbjct: 817 MVTEEQEKIVAVAKLAERDDE 837
>gi|358051219|ref|ZP_09145437.1| DNA gyrase subunit A [Staphylococcus simiae CCM 7213]
gi|357259295|gb|EHJ09134.1| DNA gyrase subunit A [Staphylococcus simiae CCM 7213]
Length = 893
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/821 (41%), Positives = 530/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITNEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L +P+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKDPDISITELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+RI
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRI 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMESLQTRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+K ++ R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNDLLNYISELEAILADEEVLLQLVRDELTEIKEKYGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HD+VL+F+++G VY + Y++PE +R + G P+V + L E I+++I
Sbjct: 545 FVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDSDENISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ FLV T G +K+ L+ FS I G IAI DEL VR + D+ +
Sbjct: 605 VKDLESEEDFLVFATKRGIVKRSRLSNFSRINRNGKIAISFKEDDELIAVRLTSGDEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L+ GD++ +D+ +H+
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTATGVKGITLRQGDEVVGLDV---------------AHT 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+ S +L V+E+G+GKR P+ +R L+ G G K + +R V +
Sbjct: 710 D----SVDEVLVVTENGYGKRTPVDEYR---LSNRGGKGIKTATITERNGNVVCITTVSG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>gi|396078561|dbj|BAM31937.1| DNA gyrase subunit A [Helicobacter cinaedi ATCC BAA-847]
Length = 824
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/745 (45%), Positives = 494/745 (66%), Gaps = 25/745 (3%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
V V++ + + SY+ YSMSV++GRALPD +DGLKPVHRRIL+AM+EL LS R+P+KK AR
Sbjct: 10 VEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPYKKSAR 69
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRYTE R+
Sbjct: 70 IVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTEARMT 129
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+ SE ML DID+DTV FVPN+D + EP +LP+R+P LL+NG+SGIAVGMAT+IPPH +
Sbjct: 130 SASEEML-RDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIPPHRI 188
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E++D L +I N + ++LE + GPDFPTGG+I G +GIL+AYRTGRGRI VR K
Sbjct: 189 DEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVRAKVH 248
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E +K+K + ++I E+PYQ NK+ LVE+I+EL + K ++GI+++RDESDR G+R+VIE
Sbjct: 249 IE--KTKTKDV-IVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVVIE 305
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR A IV+N L++ T ++S+F ++ I + +PK L E+LQ F+ R +++ RR+
Sbjct: 306 LKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRRS 365
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
F+L + K R HI+EG+++ LDN+D +IRI+R + A AL ++F LSE QA AIL+
Sbjct: 366 IFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSELQAKAILE 425
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L+RLT LER K E L EQI LE +L S + + +++ E++E+K +FS+ R +
Sbjct: 426 MRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQ 485
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+E+ D +D D+IPN+++++ +S +GYVKR+ T+ QNRG GK G +D +
Sbjct: 486 IEE-DYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNTHEDDFIE 544
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
F V HD +++ +++G +Y + YKIPE R A G +V +++LS E+I + I ++
Sbjct: 545 SFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKIMATITTTD 604
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLVAMAS 743
F D+ LV T NG +K+ +L +S+IR+ G+ AI L DEL ++ + +A+
Sbjct: 605 FNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKELFIAT 664
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
Q GM I D +R + R RG ++ K AS D + AA
Sbjct: 665 QQGMCIRFGIDELREIGRVGRGVTGIKFK-----ASEDCVIAA--------------TTI 705
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFR 828
S LL VSE G GK+ +R
Sbjct: 706 TSDTDKLLTVSEQGIGKQTLAGEYR 730
>gi|395790926|ref|ZP_10470385.1| DNA gyrase, A subunit [Bartonella alsatica IBS 382]
gi|395409222|gb|EJF75821.1| DNA gyrase, A subunit [Bartonella alsatica IBS 382]
Length = 925
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/903 (41%), Positives = 537/903 (59%), Gaps = 78/903 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPINIVDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSYNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LLADID++TV+F N+D ++EP +LPAR P LL+NGA GIAVGMATNIPPHN
Sbjct: 136 EKVSEE-LLADIDKETVDFQDNYDGREREPVVLPARFPNLLINGAGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD ALI +P TL +++E +PGPDFPTGG+I+G+ G+ AY TGRG I +R K
Sbjct: 195 LGEVVDGCIALIDDPNITLDKIIEIIPGPDFPTGGIILGHSGVRSAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+VE + +S R +I+ EIPYQ NK+ ++EK+AELV +K ++GI+D+RDESDR G R+VI
Sbjct: 255 DVEEI--RSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGIADLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ IV+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKKDVVAEIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R+AP +A A L
Sbjct: 373 TKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQSARAQLMERRWPAADVASLIK 432
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AIL++ L+RLT L R + DE + I +L+
Sbjct: 433 LIDDPRHIIHQDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLHILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+Q+++ E+ L+ F+TPR ++ S ++D D+I +++M++ +S GY+KR+
Sbjct: 493 SRSRIMQIVKDELNALREEFATPRRTVF-GFGSAEMDSEDLIASEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 612 QSRGRALINMLPLQKGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI-LSSCDIIRSLSRNTRGSVAMRLKD 773
G IA++L DE+ V CT D V + + NG I D+ RN+ G + L +
Sbjct: 672 GKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGVRGINLAN 731
Query: 774 GDKMASMDIIPAALHKDLERTP------------------------EDSHSNVKGSSGPW 809
GDK+ SM I+ + +ER+ +D + + + +
Sbjct: 732 GDKVISMTILEHVVATSVERSAYIRRVIHERRAAGADAEDILTLDEDDEGTETELTDERY 791
Query: 810 ---------LLFVSESGHGKRVPLSSFRKLPLNRVGLIGY---KFSAEDRLAAVFVVGFS 857
LL VSE G+GKR FR G+ K S +L A F V
Sbjct: 792 AELSACEQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTSEIGKLVAAFPVKVQ 851
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
+Q++LVS G + R+ V I I R +GV + K+ S IS +E
Sbjct: 852 --------DQIMLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTAEGEKVVSVERISESED 903
Query: 918 ETD 920
+ +
Sbjct: 904 DAN 906
>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
Length = 829
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/822 (42%), Positives = 528/822 (64%), Gaps = 38/822 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I V + + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM+ELG++S+ +KK A
Sbjct: 9 IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRYTE ++
Sbjct: 69 RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+E +L DID+DTV+F+PN+D++ KEP +LP+RLP LL+NG++GIAVGMATNIPPH
Sbjct: 129 TQAAEE-VLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHR 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D L LI NP+A L E+L+++ GPDFPTGG+I G GI +AY TGRGRI VR KT
Sbjct: 188 VDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRAKT 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E +K+K + ++I EIPYQ NK+ LVE+IAEL + K ++GIS++RDESDR G+R+VI
Sbjct: 248 HIE--KTKTKDI-IVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A IV+N L++ T ++S+F ++ I + +PK L E+L F+ R SVV RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + K R HI+EG+ + L+N+D ++ ++R + A L +F LSE QA AIL
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQAQAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER+K +E + L+++I L +L S + ++I++E++E+K +FST RL+
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFSTKRLT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+E+ D +D D+IPN+ +++ +S +GYVKR+ T+ QNRG GK +D +
Sbjct: 485 AIEE-DYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTHDDDFI 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F V HD +++ +++G +Y + YKIPE +R A G +V +++L+ E+I + I
Sbjct: 544 ESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINLAPDEKIMATITTK 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND-DLVAMA 742
+F D+ + T NG IK+ +L+ F +IR+ G+ AI L DEL + + + +
Sbjct: 604 DFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDELVTAKIISPAIQQILVV 663
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS--HS 800
+ GM + S D +R + R RG A++ K P+D +
Sbjct: 664 TYEGMCVRFSVDNVREIGRVARGVTAIKFK---------------------IPKDYVIGA 702
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLA 859
V + +L VSE G GKR ++ +R G+I K +++ +L V V
Sbjct: 703 TVVSNENEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLTSKTGKLVGVVNV----- 757
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ + +++++ SG + R+ ++ I R GVI++ ++
Sbjct: 758 ---DENMDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD 796
>gi|421721264|ref|ZP_16160540.1| DNA gyrase, A subunit [Helicobacter pylori R055a]
gi|407225025|gb|EKE94798.1| DNA gyrase, A subunit [Helicobacter pylori R055a]
Length = 827
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 538/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARVHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T G +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKKGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I +D
Sbjct: 662 HLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVI-----------NDD 710
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
S+ LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 SNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
Length = 826
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/836 (41%), Positives = 526/836 (62%), Gaps = 30/836 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+I+P+ + EEM +Y+ YSMSV++ RALPDVRDGLKPVHRR+L+ MHELGL S KP KK
Sbjct: 5 KILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKKS 64
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD+AVYDSLVRM QDFSLRYPLI G GNFGS+D D AAMRYTE R
Sbjct: 65 ARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVR 124
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
++A++ ML D+D++TV+F NFD+S +EP++LP+ +P LL+NGASGIAVGMATNIPPH
Sbjct: 125 MKAIAGEML-KDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPH 183
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
N+ E+V L A+I +PE + +L++Y+ PDFPTGG+I G G+ AY TGRG++ +R +
Sbjct: 184 NMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRAR 243
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
VE+ K+ R +I+ E+PYQ NK L+EKI ELV +K ++GI+DIRDESDR GMR+V
Sbjct: 244 AVVEVT-QKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IELKR A P +V+N LY+ T +Q +F M+ ++DG P+ + LKE++Q ++ R +V R
Sbjct: 303 IELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVLR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++ L+ ++R HI+EG+ + LDNLD VI +R++P TA + L D F L+E QA AI
Sbjct: 363 RTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDRFGLTEVQAKAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L+RLT +ER+K DE K M I +L+ +L+S +++I++E++++ + R
Sbjct: 423 LEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASPAKQMEIIKEELLKVSEVYGDERR 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + G D+I +++++ I+ G++KR + + Q+RG G + + + D
Sbjct: 483 TEMR-PQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQHRGGRGVAGAQAKNEDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + H+++L+F+ G Y + Y+IPE R+A G L I+ L GE+I + I +
Sbjct: 542 IEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSARGRSLANIMELPPGEKIRTYINI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
F F++M T NG +KK L +S+ R TGI AI + GDEL R D V +A
Sbjct: 602 RNFDDPHFIIMATANGIVKKTDLKQYSNPRRTGINAITIEEGDELIEARLTDGDHQVILA 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+G + +RS+ R G + L + ++ SM T + S
Sbjct: 662 KSSGYAVRFPESEVRSMGRTAMGVKGITLDEAERCISM-----------VTTKRNDTS-- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
LL V+++G+GKR + +R G+I K A +++ +VG D
Sbjct: 709 -------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIK--AHEKIGN--LVGLL---DV 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
++ +++++ +G V R V DI + R GV L+RL+ +I + + + ++ E
Sbjct: 755 NDEDDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDE 810
>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 853
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/870 (41%), Positives = 542/870 (62%), Gaps = 51/870 (5%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PNV ++ V+L + M SYI Y+MSV+ RALPDVRDGLKPV RR+L++M EL K
Sbjct: 3 PNVFDKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI +DTV+FVPNFDE++KEP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E +L+E++E + GPDFPTG I+G I +AYRT
Sbjct: 182 NIPPHNLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GR +I VR T +E + + R +I+ E+PY NK+ L+EKIA+LV+ K +DGI+ I D
Sbjct: 242 GRAKIKVRAVTNIETMANGKSR--IIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ES+R GMRI IEL+R + ++++N L + T LQ +F M+ ++D QPK + L ++L +
Sbjct: 300 ESNREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR ++ L++ +ER HI++G+++ LD++D VIRI+R + + + A L + F
Sbjct: 360 LKHQEEVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMERF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
LS+ Q+ AI+DM LR LT LER+K +E K L+ +I +L+ +L+ K +L +I++E+
Sbjct: 420 GLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILADVKKLLTVIKEEIQI 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGT 609
+ +++ R + + G DD+ D+IP+++ ++A++ GY+KRM + F QNRG
Sbjct: 480 IADKYGDDRRTAI-----GYDDDVSMEDLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRG- 533
Query: 610 IGKSVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
GK + ++ D + D ++ H +++F+++G VY +AY+IPE R A GT ++ +
Sbjct: 534 -GKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAGRTARGTAIINL 592
Query: 668 LSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL 727
L L E+IT+IIP+ E+ D++L M T NG +KK + + +R G+ AI L DEL
Sbjct: 593 LQLQPDEKITAIIPMREYNEDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLREDDEL 652
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
V+ N+ + + ++ GM I + +R R + G + MR ++ D++ M +
Sbjct: 653 IEVKATDNNQDIFLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEEDDEVIGMQM----- 707
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR 847
S G LL VSE+G GKR +S F G+I YK + +
Sbjct: 708 ----------------ESQGESLLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTEK-- 749
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
+VG L DG +++L++ G V R+ V DISI R GV LM ++ I+
Sbjct: 750 --TGNIVGAKLVNDG---REIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIK 804
Query: 908 SASLISVTE---PETDLFLPSTSDKLATES 934
AS+ V E E+++F D+ E+
Sbjct: 805 VASIAKVRESVTKESNVFDEEFYDEETAEA 834
>gi|333893161|ref|YP_004467036.1| DNA gyrase subunit A [Alteromonas sp. SN2]
gi|332993179|gb|AEF03234.1| DNA gyrase, A subunit [Alteromonas sp. SN2]
Length = 898
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/870 (42%), Positives = 536/870 (61%), Gaps = 86/870 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+EL KP+KK A
Sbjct: 8 ILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
RVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYTE R+
Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ LLAD+D++TV+FVPN+D ++ P +LP ++P LL+NG+SGIAVGMATNIPPHN
Sbjct: 128 AKIAHE-LLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+++ ALI +P T+ +L+ ++PGPDFPT +I G GI DAYRTGRG+I +R K
Sbjct: 187 LTEVINGCIALIKDPSITIDDLMLHIPGPDFPTAAMISGRKGIDDAYRTGRGKIYMRAKA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E D+ + +II EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ GMRIV+
Sbjct: 247 EIETEDNGKET--IIINEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVV 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR +++N LY T LQ+ F NMV + +GQPK LKE L+AF+ R VV RR
Sbjct: 305 EVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLEAFILHRREVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
F+L + ++R HI+EG+ + L N+D +I +++ +P + A AL
Sbjct: 365 TVFELRKARDRAHILEGLAIALANIDPIIELIKASPGPADAKKALVAQGWDLGDVSQMLE 424
Query: 489 -------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQI 529
++ L+E+QA AILD+ L RLT LE +K ++E K L+E I
Sbjct: 425 RAGDDAARPDWLMPEFGIRDGQYFLTEQQAQAILDLRLHRLTGLEHEKILEEYKQLLEVI 484
Query: 530 LKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAIS 589
+L +L+S + ++++IE+E+ +++ F R + + A S +D D+I +++++ +S
Sbjct: 485 AELLHILNSPERLMEVIEEELEKIREEFGDARRTEIT-AASHDIDIEDLIEQEDVVVTLS 543
Query: 590 EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARA 649
+GYVK K N + Q RG GKS K++ D + +V HDH+L FS RG +Y +
Sbjct: 544 REGYVKYQKLNDYESQRRGGRGKSATKMKNEDFIEKLLVANTHDHILCFSTRGRLYWLKV 603
Query: 650 YKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709
Y++P +RNA G P+V IL L D ERIT+I+P+ EF +F++M T NG +KK L+L+S
Sbjct: 604 YQLPLASRNARGRPIVNILPLEDNERITAILPIKEFEEGKFVLMATANGTVKKTDLSLYS 663
Query: 710 SIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDI-------------- 755
R++GIIA+ L GDEL V DD + + S G V+ + +
Sbjct: 664 RPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGNVKLDPET 723
Query: 756 ------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809
+R + R G +RL+D ++ S+ I+P GP
Sbjct: 724 GEELLALRPMGRTATGVRGIRLQDDQRVVSL-IVPRG-------------------DGP- 762
Query: 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVV 869
+L +E+G GKR PL + G++ K S + VVG ++ +++
Sbjct: 763 ILTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGK----VVGAVQVDEA---NEIM 815
Query: 870 LVSQSGTVNRIKVRDISIQARYARGVILMR 899
L+S GT+ R +V ++S+ R +GV L+R
Sbjct: 816 LISDQGTLVRTRVGEVSVVGRNTQGVRLIR 845
>gi|302384450|ref|YP_003820272.1| DNA gyrase subunit A [Clostridium saccharolyticum WM1]
gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
Length = 853
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/847 (41%), Positives = 530/847 (62%), Gaps = 42/847 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN+ ++ V+L + M SYI Y+MSV++ RALPDVRDGLKPV RR+L++M EL K
Sbjct: 3 PNIFDKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV +AQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S M LADI++DTV+F PNFDE+++EP +LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEM-LADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALIHNP-----EATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E++ + +I N E T++E+LE + GPDFPTG I+G GI +AYRT
Sbjct: 182 NIPPHNLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR +++E + + R +I+ E+PY NK+ L+EKIAELV++K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVSDIEAMANGKNR--IIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDG-----QPKQMGLKE 427
ESDRSGMRI IEL+R A+ ++V+N L + T LQ +F M+ ++ +PK + + +
Sbjct: 300 ESDRSGMRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQ 359
Query: 428 VLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA 487
+L +LD + VV RR R+ L++ +ER HI++G+++ LDN+D VIRI+R + + A A
Sbjct: 360 MLNYYLDHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAE 419
Query: 488 LKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIE 547
L F LS+ Q+ AI+DM LR LT LER+K +E + L +I +L+ +L+ K +L +I+
Sbjct: 420 LMSRFGLSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIAELKSILADEKKLLGVIK 479
Query: 548 QEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNR 607
+E+ + ++ R + + D + D+IP++ ++A+++ GY+KRM + F QNR
Sbjct: 480 EEISIISAKYGDDRRTSI-GFDEFDMSMEDLIPDESTIVAMTKLGYIKRMSVDNFKNQNR 538
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G G + D + D ++ H ++++F++ G VY + Y IPE +R + GT +V +
Sbjct: 539 GGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTSRGTAIVNL 598
Query: 668 LSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL 727
L + GE IT+IIP+ E+ D+FL M T NG +KK + ++++R G+ AI L DEL
Sbjct: 599 LQMLPGESITAIIPMKEYDDDKFLFMATRNGMVKKTPMMEYANVRKNGLQAIVLRENDEL 658
Query: 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
V+ + + + ++ G I +R R + G + M+L + D++ M
Sbjct: 659 IEVKATDDTKDIFLVTKKGQCIRFHEKDVRITGRVSMGVIGMKLNEDDQVVGMQ------ 712
Query: 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR 847
K S GP LL VS +G GKR P+ F G++ YK + +
Sbjct: 713 ---------------KESQGPKLLIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITEK-- 755
Query: 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQ 907
+VG L ED D ++L++ G V RI V DIS+ R GV LM ++ I
Sbjct: 756 --TGDIVGAKLVED---DHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDIT 810
Query: 908 SASLISV 914
AS+ V
Sbjct: 811 VASIAKV 817
>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
Length = 813
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/829 (43%), Positives = 528/829 (63%), Gaps = 40/829 (4%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + +E+ SY+ Y+MSV++GRA+PDVRDGLKPVHRRI +AMHEL KP+KK AR+V
Sbjct: 6 INIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKSARIV 65
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+AVYD+LVRMAQDFS+RY L+ G GNFGS+D DP AAMRYTE R+ +
Sbjct: 66 GDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVRMNRI 125
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ DI+++T+ F PN+D + EP +LPAR+P LLLNG+SGIAVGMATNIPPHNL E
Sbjct: 126 GHE-FMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHNLRE 184
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L L A++ +P+ T+++L+ Y+PGPDFPT G I G +GI DAY TGRG I +R + EVE
Sbjct: 185 LCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARVEVE 244
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+R +II E+PYQ NK+ L+E+IAELV+ K ++GI DIRDESDR GMR+V+ L+
Sbjct: 245 ---ESGRRNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTLR 301
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+G +P ++ N LY+ TAL+SSF M+ ++D +P+ + LK VL FLDFR V+ RR ++
Sbjct: 302 QGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQY 361
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L+Q ++R HI+EG+ LD+LD VI ++R A + A L + F+ S+ QA AIL+M
Sbjct: 362 ELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMERFEFSDVQAQAILEMR 421
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER+K ++E + ++++I +L ++LSS + Q+I +E+ EL +++ R + +
Sbjct: 422 LQRLTGLEREKIIEEYQEIIKEIERLRQILSSAALVDQVIREEIKELTDQYGDLRKTEIL 481
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
A++G+L D+I +EM++ IS GY+KR + + Q RG G++ R D ++
Sbjct: 482 -AEAGELCIEDLIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKGRTGMSTREEDLVTSL 540
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
HD++L F++RG VY + Y+IPE +A G +V +L + ERI +++PV EF
Sbjct: 541 FTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDERIQTVLPVKEFK 600
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND---DLVAMAS 743
F VM T NG IKK L+ +S+ R+TGI AI L DEL + C D DL M S
Sbjct: 601 EGFFAVMATRNGVIKKTDLSAYSNPRSTGIRAIVLDDDDEL--ISVCVTDGSHDLFLM-S 657
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I + R L R +RG M+L DG +M MD+I
Sbjct: 658 RAGKSIRVNEREFRPLGRVSRGVRGMKL-DGSRMVGMDVI-------------------- 696
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G +L ++E G GKR +R G++ + + + VVGF + GE
Sbjct: 697 -EEGKAILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERNG----SVVGFR--QVGE 749
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DEQ+++++ G + R+ V IS R +GV LM L K+ +++
Sbjct: 750 -DEQILMITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDVAVL 797
>gi|153007330|ref|YP_001381655.1| DNA gyrase subunit A [Anaeromyxobacter sp. Fw109-5]
gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
Length = 891
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/844 (43%), Positives = 519/844 (61%), Gaps = 54/844 (6%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V + +EM SY+ YSMSV++GRALPDVRDGLKPVHRR+L+AMH GL K + KCA VV
Sbjct: 28 VAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 87
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
GEVL K+HPHGD +VYD+LVR+AQD++LRYPLI G GNFGS+D DPAAA RYTE RLE L
Sbjct: 88 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLERL 147
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
++ LLADID++TV++ PNFD+S EP +LP R P LL+NG++GIAVGMATNIPPHN+GE
Sbjct: 148 AD-FLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
++D + LI NP+ T+ EL+ ++PGPDFPT G+I G GI AY GRG I VR + +E
Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASIE 266
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ K++R +++ EIPYQ NK+ LVE IA+LV K L+GISD+RDES R GMR+VIELK
Sbjct: 267 V-HPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELK 325
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A +V+N+LY T +Q+ F ++ I GQP+ + LKE+L+ F+ R VV RR RF
Sbjct: 326 RDAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRF 385
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + +ER HI+ G+ + LD+LD +I ++R+AP A L F LSE QA AIL+M
Sbjct: 386 ELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITRFALSELQAKAILEMQ 445
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS-ML 565
L+RLT LER+K +DE + + IL+L+E+L+S K ++++I E+ E+K F+ R + +L
Sbjct: 446 LQRLTGLERQKILDELAEVQKIILRLKEILASEKVLMEVIAGELREVKQLFADERRTEIL 505
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+A +D+ I +EM++ +S GYVKR + + Q RG GK+ R D +
Sbjct: 506 GEATDYSTEDL--IAEEEMVVTVSHAGYVKRNPVSLYRAQRRGGRGKTGAATRDEDFLES 563
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
V H ++L FSD+G VY + ++IP R A G P+V ++ LS GE++ +I+PV
Sbjct: 564 IFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGKPIVNLVQLSQGEKVAAILPVRRL 623
Query: 686 ----------------------------AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717
G Q++ M T G IKK L FS R GII
Sbjct: 624 PEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMATRRGLIKKTRLEQFSRPRAAGII 683
Query: 718 AIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKM 777
A+ + DEL R V +++ GM I +R++ R G + L+ GD +
Sbjct: 684 ALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEESDVRAMGRTAYGVKGITLEPGDAV 743
Query: 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL 837
S + IPAA P+ G P +L V+ +G+GKR L+ +R G+
Sbjct: 744 VSAETIPAA-------PPQ-------GEPAPTILTVTRNGYGKRTELAEYRVQSRGGKGI 789
Query: 838 IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897
I K + + VV +L D E+V+L++ G + R+ + IS+ R +GV L
Sbjct: 790 ITIKTTERNGP----VVAAALVSD---VEEVMLITNGGMLIRMPAKGISVIGRNTQGVRL 842
Query: 898 MRLE 901
+ LE
Sbjct: 843 ITLE 846
>gi|350425850|ref|XP_003494252.1| PREDICTED: DNA gyrase subunit A-like [Bombus impatiens]
Length = 843
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/862 (41%), Positives = 543/862 (62%), Gaps = 47/862 (5%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I P+ + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+F PN+D ++ P +LP R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LLADLEKETVDFSPNYDGTELIPDVLPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A + + +++ L++++PGPDFPT +I G GI DAYRTGRG+I
Sbjct: 182 IPPHNLNEVINGCLAYMDDENISIEGLMQHVPGPDFPTAAMISGRKGIEDAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR + ++E +D K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 VRSRADIE-VDEKTHRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKEG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK + LK++L+AF+ R
Sbjct: 301 MRIVIEVKRDAVAEVVLNNLYSQTQLQISFGINMVALHHGQPKLLNLKDMLKAFVTHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK----- 493
VV RR F+L + +ER HI+EG+ + L N+D +I ++++A +++ L EF
Sbjct: 361 VVTRRTIFELRKARERAHILEGLAIALANIDPIIELIQKAGNDAARPEDLDPEFGVRDNH 420
Query: 494 --LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551
LSE QA AILD+ L++LT LE +K +DE K L++QI L +L + ++++I +E+
Sbjct: 421 YFLSEAQAQAILDLRLQKLTGLEHEKIIDEYKLLLDQISALLYILQNPNRLMEVIREELE 480
Query: 552 ELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG 611
E++ ++ PR + + A S ++ D+I +++++ +S +GYVK + Q RG G
Sbjct: 481 EIRAQYQDPRRTEIT-ASSADINIEDLIAQEDVVVTLSHQGYVKYQPVTDYEAQRRGGKG 539
Query: 612 KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLS 671
KS +++ D + +V HD +L FS RG +Y + Y++PE +R A G P++ IL L
Sbjct: 540 KSAARIKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPEASRGARGRPIINILPLE 599
Query: 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVR 731
ERIT+I+PV EF ++ M T +G +KK +L+ FS R GIIAI L GDEL V
Sbjct: 600 ANERITAILPVKEFDDQHYVFMATASGTVKKTALSEFSRPRAGGIIAINLRDGDELIGVD 659
Query: 732 CCTNDDLVAMASQNGMVI-------LSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDI 782
+ + + S +G V+ L I +R++ R G ++L D D++ S+ I
Sbjct: 660 LTDGTNEIMLFSASGKVVRFREEEELEDGTIKGVRAVGRTAAGVRGIKLSDDDQVVSL-I 718
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
IP +G +L V+++G+GKR + G+I K
Sbjct: 719 IP------------------RGDGA--ILTVTQNGYGKRTAQDEYPTKSRATQGVISIKV 758
Query: 843 SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLEL 902
S + V+G +D ++Q++L++ +GT+ R +V ++SI R +GV L+R
Sbjct: 759 SERNGR----VIGAVQVDD---NDQIMLITDAGTLVRTRVSEVSIIGRNTQGVTLIRTAD 811
Query: 903 SGKIQSASLISVTEPETDLFLP 924
K+ ++ T+ + + P
Sbjct: 812 DEKVVGLQCVAETDDDEEQSEP 833
>gi|417985325|ref|ZP_12625911.1| DNA gyrase subunit A [Lactobacillus casei 32G]
gi|410528755|gb|EKQ03602.1| DNA gyrase subunit A [Lactobacillus casei 32G]
Length = 873
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/843 (41%), Positives = 533/843 (63%), Gaps = 43/843 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V L E M S++ Y+MSV++ RALPDVRDGLKPV RRIL+ M+ELG++ KP+KK
Sbjct: 8 RITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+ LVRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ ML DI++DT++F N+D ++KEP +LPAR P LL+NGA+GIAVGM TNIPPH
Sbjct: 128 MSKIAVEML-RDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E + L L+ NP+AT +L++ +PGPDFPTGG++MG GI AY TGRG I +RGK
Sbjct: 187 NLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+V+ KS R ++I EIPY NK+ +VE+IA+LV K +DGI +RDESDR GMRIV
Sbjct: 247 VDVQT--EKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A S+++N+LY+LT LQ+ FS NMV I++G PK + LK++LQ +LD + +V+ R
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRR 364
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R +F L + K R HI+EG+ + LD++D +I I+R + + A L D+FKLS+KQ+ AI
Sbjct: 365 RTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQAI 424
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER+K E K + I ++L+ + + Q+I E+++++ +F R
Sbjct: 425 LDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGDKRR 484
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ L + L+D D+I +++++ +S GYVKR+ + F Q R G + +D
Sbjct: 485 TELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQXRXGRGIQGMNVHDDDF 544
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ I HD +L+F+++G VY ++ Y+IPE R A G P++ +L + GE+I ++I V
Sbjct: 545 VERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGVGAGEKIQTVINV 604
Query: 683 SEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E D++L +T G +K+ + F++IR+ G+IA+ L DEL V + D + +
Sbjct: 605 HEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVILTSGQDNILI 664
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ G + +RS+ R+ G +RL++ D + DI L D E
Sbjct: 665 GTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYVVGSDI----LKPDSE--------- 711
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK---FSAEDR-LAAVFVVGFS 857
+ +SE G+GKR ++ ++ P+ G G K +A++ LA V V
Sbjct: 712 --------VFVISEKGYGKR---TAAKEYPIKGRGGKGIKTANITAKNGPLAGVTTV--- 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEP 917
DG D +++++ SG + R ++ +S R GV L+R++ K+ + + + EP
Sbjct: 758 ---DGTED--ILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKV---EP 809
Query: 918 ETD 920
E+D
Sbjct: 810 ESD 812
>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
Length = 802
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/819 (42%), Positives = 538/819 (65%), Gaps = 35/819 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ V + + + SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+E+G+ KP+KK A
Sbjct: 6 IIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPYKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+AVYD+LVRMAQDFS+RYPL+ G GNFGSID D AAAMRYTE R+
Sbjct: 66 RIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYTEVRM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E ML +DID+DTV+F PN+D S KEP +LP R+P +L+NG SGIAVGMATNIPPHN
Sbjct: 126 TKIAEEML-SDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E++D L +I NP T +E+L ++ GPDFPT G+I G IL AY+TG+G I VR K
Sbjct: 185 LTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVRAKV 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+ E+ + + + +++ E+PYQ NK+ L+EKIA L +K ++GI D+RDESDR G+RIVI
Sbjct: 245 KKEI--TTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKRG + I++N LY+ T ++ ++ N+VGI++ +PK + L+++L+ FL+ R VV RR
Sbjct: 303 ELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
+F L + ++R HI+EG++ ++N+D V+ +++ + + + A L + F+LS+KQA AIL
Sbjct: 363 TKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQAQAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L RLT LE +K +E K ++ I + +L+++ ++ +I++E+I++KN++ R +
Sbjct: 423 DMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGDERRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ ++ S +++ D+IP+DE+++ +S +G++KR + F Q RG GK+ D +
Sbjct: 483 QIVNS-SEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKTGAGNVKEDFI 541
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
D +V H +++F+++G ++ + Y++PE R+A G + ++SL E++ ++I
Sbjct: 542 KDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLISLDKDEKVAAMISTK 601
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
EF D+++ M T G +KK SL+ FSS R +GIIAI+L GDE+ + +D + +++
Sbjct: 602 EFDRDRYIFMCTKEGIVKKTSLDAFSSGR-SGIIAIKLRDGDEIVDASLISKNDSIFIST 660
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ G I + +R++ RN G + L DK+ SM+ VK
Sbjct: 661 RKGKCIQFNSSEVRNMGRNATGVKGITLTKDDKVVSMEA-------------------VK 701
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDG 862
G P +L V+ G GK ++ +R + G G K S +R +VG A
Sbjct: 702 GD--PLILTVTTKGFGKSSLITDYR---IQSRGGKGIKLSKVTERTGE--IVG---ARQV 751
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
+ ++ V+L+S+S V R+ V DI I R +GV LM L+
Sbjct: 752 KLEDDVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGLD 790
>gi|420458539|ref|ZP_14957349.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-26]
gi|393076060|gb|EJB76814.1| DNA gyrase, A subunit [Helicobacter pylori Hp A-26]
Length = 828
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/822 (43%), Positives = 536/822 (65%), Gaps = 33/822 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVS 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEVAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS G+ I + +R + R TRG +RL + D + +I
Sbjct: 662 KHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVISG----------- 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
G LL VSE+G GK+ ++R+ G+IG K + + +VG
Sbjct: 711 ---------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQK----TGNLVGV 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 ISVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
Length = 844
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/832 (42%), Positives = 527/832 (63%), Gaps = 50/832 (6%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI+ ++++EM YI Y+MSV++ RALPDVRDGLKPVHRRIL++M ELGL S K ++K
Sbjct: 10 RIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLGSDKQYRKS 69
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+ +GK+HPHGD+++Y ++VRMAQ+FS RYPL+ G GNFGSID D AAMRYTE R
Sbjct: 70 ARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPAAMRYTEAR 129
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ A++LADID+DTV F PNFDES KEP +LP+R P LL+NG+SGIAVGMATNIPPH
Sbjct: 130 MSKMT-ALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGMATNIPPH 188
Query: 263 NLGELVDVLCALIHN----------PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NL E+V+ + +I N E ++EL+ + GPDFPTG I G GI AYRT
Sbjct: 189 NLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRYGIDQAYRT 248
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG++ V+ K E+E + R +++ EIPY NKS L+EK+A+LV+ + +DGI+DIRD
Sbjct: 249 GRGKVKVKAKAEIEAMQGGKNR--IVVTEIPYMVNKSSLIEKMADLVKERKIDGITDIRD 306
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ESDR+G+ +VIEL+R +P++++N LY+ T LQ +FS NM+ ++D +PK + LK++L+ +
Sbjct: 307 ESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLKQILEEY 366
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L + VV RR +F+L++ + R HI+EG+ LDN+D V+ ++RE+ + A L +
Sbjct: 367 LKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKDKLMEAI 426
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
+L+E QA AI++M LR LT LER+K E L+E+I L+ +L+S +L +I+ E+ E
Sbjct: 427 ELTEIQAQAIVEMRLRALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSVIKDEITE 486
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+K ++ R + + D + D D+I + +++ I++ GY+KR+ +T+ QNRG GK
Sbjct: 487 VKQKYGDGRRTDIT-IDEDEYDIEDLIDEENIVVTITQLGYIKRIPLDTYKNQNRG--GK 543
Query: 613 SVGKLRVNDAMSDFI----VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL 668
G + VN DFI V +++++F+++G Y + Y+IPE R A GT +V +L
Sbjct: 544 --GIIGVNTIEDDFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTAIVNLL 601
Query: 669 SLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELK 728
L E+IT++ P+ EF + FL M+T G IKK L F +IR G+IA+ L DEL
Sbjct: 602 ELDKDEKITAVFPIKEFEDNTFLTMVTKKGQIKKTPLKDFRNIRKGGLIALSLNEEDELV 661
Query: 729 WVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALH 788
V T+ D + +A++NG I+ +R + R RG A+ L + D ++I A +
Sbjct: 662 DVHQTTSKDAILVATRNGQGIMFDATDVRPMGRTARGVRAINLGETD-----EVIGATVP 716
Query: 789 KDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848
K+ G +L +E G GKR + +FR GL K + ++
Sbjct: 717 KE----------------GEQILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKIT--EKT 758
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ V ED +++L++ G + RIKV IS R A+GV L+ +
Sbjct: 759 GCIIGVASVSEED-----ELLLITSQGIIIRIKVAQISSIGRNAQGVKLINV 805
>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
upsaliensis JV21]
gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
upsaliensis JV21]
Length = 852
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/846 (42%), Positives = 531/846 (62%), Gaps = 61/846 (7%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+++ + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM++LG+ SR +KK AR+V
Sbjct: 14 IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD AVYD+LVRMAQ FS+RYP + G GNFGSID D AAAMRYTE R+ L
Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTEARMTIL 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+E LL DID+DTV+FVPN+D+S +EP +LP+R+P LLLNG+SGIAVGMATNIPPH+L E
Sbjct: 134 AEE-LLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
LVD L L+ N EA+L+EL++++ GPDFPT G+I G GI+DAYRTGRGRI +R KT +E
Sbjct: 193 LVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIRAKTHIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
++ + ++I E+PYQTNK+ L+E+IAELV+ K ++GI+++RDESDR G+R+VIELK
Sbjct: 253 ---KRANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVVIELK 309
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A IV+N+L++ T ++S+F M+ I + +PK L E+L FL R +V+ RR +
Sbjct: 310 RDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRTIY 369
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LDN+D VI +++ + N+ A L +F LSE QA+AILDM
Sbjct: 370 ELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQANAILDMK 429
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RLT LER+K +E L+++I +L+E+L S + LI +E+ E++ +F PR++ +E
Sbjct: 430 LGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIRAKFDVPRITQIE 489
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D +D D+IPN+ M++ I+ +GY+KR+ + Q RG GK +D + F
Sbjct: 490 DDYD-DIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
HD +++ +D+G +Y + YKIPE +R A G +V +++L E+I +IIP S+FA
Sbjct: 549 FTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTSDFA 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ L T NG +K+ +L+ + +IR+ G+ AI L DEL + A+ +
Sbjct: 609 ESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDEL----------VTAIIVERD 658
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
++ LS +D + E S N++
Sbjct: 659 LIELSQA----------------------------------SQDENLSEEASEENLENVG 684
Query: 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGESD 865
G L V++ G + PL+ R++ G+ KF + D L V+ E+D
Sbjct: 685 GKMLFAVTKRGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVI--------END 736
Query: 866 EQVVL-VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLP 924
EQ VL VS G R + +Q+R +GVI M+ L+ K + + + + DL
Sbjct: 737 EQEVLSVSAKGIGKRTNAGEYRLQSRGGKGVICMK--LTDKTKELISVVIVDESMDLMAL 794
Query: 925 STSDKL 930
++S K+
Sbjct: 795 TSSGKM 800
>gi|395786448|ref|ZP_10466175.1| DNA gyrase, A subunit [Bartonella tamiae Th239]
gi|423716659|ref|ZP_17690849.1| DNA gyrase, A subunit [Bartonella tamiae Th307]
gi|395422746|gb|EJF88942.1| DNA gyrase, A subunit [Bartonella tamiae Th239]
gi|395428733|gb|EJF94808.1| DNA gyrase, A subunit [Bartonella tamiae Th307]
Length = 956
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/917 (41%), Positives = 538/917 (58%), Gaps = 91/917 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I PV + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM+E+GLS K ++K A
Sbjct: 41 IEPVNIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEMGLSFNKSYRKSA 100
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
V+GEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGSID DP AAMRYTECRL
Sbjct: 101 GVIGEVMGKFHPHGDTSIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECRL 160
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE +L DID+DTV+F N+D +KEP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 161 EKVSENLLF-DIDKDTVDFQDNYDGREKEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 219
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+++ ALI NP +L E++E +PGPDFPTGG+I+G GI AY TGRG I +R K
Sbjct: 220 LGEVLNGCVALIDNPALSLDEMIEIIPGPDFPTGGIILGRSGIRSAYETGRGSIIMRAKV 279
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ E+PYQ NK+ ++EK+AELV +K ++GISD+RDESDR G R+VI
Sbjct: 280 DIEEI--RNDRQAIIVSEVPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVI 337
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+ M L ++L+AF+ FR VV RR
Sbjct: 338 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPELMTLMDLLKAFVSFREEVVRRR 397
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
++ L + +ER H++ G+ + + N+D +I ++R+AP +A L
Sbjct: 398 TKYLLRKARERAHVLVGLAIAVANIDEIIALIRKAPDPQSAREQLMTRRWPASDVAPLIK 457
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE QA AIL++ L+RLT L R + DE T+ +I ++L+
Sbjct: 458 LIDDPRHIIHEDNTYNLSEDQARAILELRLQRLTALGRDEIADELNTIGAEITDYLDILA 517
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+I L++ F+TPR + ++DD D+I ++M++ +S GY+KR+
Sbjct: 518 SRTRIMTIVKDEMIALRDEFATPRRTEF-GLGGAEMDDEDLIAREDMVVTVSHSGYIKRV 576
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P +
Sbjct: 577 PLNTYRSQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGSP 636
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 637 QSRGKALINMLPLQQGERITTIMPLPEDEVSWSALDVMFATTRGTVRRNKLSDFVQVNRN 696
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V C +D V + + +G I +R + RN+ G + L
Sbjct: 697 GKIAMKLDEEGDEILSVETCMENDDVVLTTADGQCIRFPVTDVRVFAGRNSIGVRGINLG 756
Query: 773 DGDKMASMDIIPAALHKDLERTP---------------EDSHSNVKGSSG---------- 807
GDK+ SM I+ ERT D S V G
Sbjct: 757 KGDKVISMTILGHVDATPAERTAYLKRAIAERRAEGADADDVSLVVEDEGYVETELSDER 816
Query: 808 --------PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED--------RLAAV 851
LL VSE G+GKR FR G G A D +L A
Sbjct: 817 YKDLSEREQTLLTVSEYGYGKRSSSYEFRI-----SGRGGKGIRATDPSKRGEIGKLIAA 871
Query: 852 FVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASL 911
F V E +Q++LVS G + R+ V I I R +GV + + K+ S
Sbjct: 872 FPV--------EIRDQIMLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTAANEKVVSVER 923
Query: 912 ISVTEPETDLFLPSTSD 928
IS EPE D+ + D
Sbjct: 924 IS--EPEDDVSISEDVD 938
>gi|424807804|ref|ZP_18233206.1| DNA gyrase, subunit A [Vibrio mimicus SX-4]
gi|342324341|gb|EGU20122.1| DNA gyrase, subunit A [Vibrio mimicus SX-4]
Length = 893
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 544/881 (61%), Gaps = 93/881 (10%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG K
Sbjct: 3 DLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+D++TV++VPN+D +++ P++LP ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D A I N T+ EL++Y+PGPDFPT LI G GI+DAY+TGRG++
Sbjct: 182 IPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R K E+E K+ + +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 MRSKAEIET--DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE KR A +V+N+LY T LQ++F NMV + +GQPK LKE+L+ F+D R
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + +ER HI+EG+ + L N+D +I ++R A + + A L
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 419
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L +LT LE +K +DE K
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+E+I L +L+S + ++++I +E+ ++ FS R + + A + +D ++I +++
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAA-THDIDMEELIAREDV 538
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS K++ D + +V HD++L FS RG
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++P +R A G P+V +L L + ERIT+I+PV+EF+ D+F+ M T +G +KK S
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
Query: 705 LNLFSSIRTTGIIAIQLVPGDEL-------------------KWVRCCTNDDLVAMASQN 745
L+ F+++R+ G+IA+ L D L K VR +++ A+ +N
Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEE-TAVVDEN 717
Query: 746 GMVILSSCDI-------IRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
G +L +R + R G M+L DGD++ S+ I+P A
Sbjct: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKA------------ 764
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSL 858
+G +L V+E+G+GKR LS + G++ K S + VVG
Sbjct: 765 ----EGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG----SVVGAVQ 812
Query: 859 AEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
+G+ + ++++ +GT+ R +V ++S R +GV L+R
Sbjct: 813 VAEGD---EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIR 850
>gi|420475542|ref|ZP_14974213.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-21]
gi|393093649|gb|EJB94266.1| DNA gyrase, A subunit [Helicobacter pylori Hp H-21]
Length = 828
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/823 (43%), Positives = 540/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++++++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKASPSPEAAKNALMERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 NKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
D E+ + ++L + + + R+ ++DI R A GV L+
Sbjct: 761 -----DDENLDLMILTASAKMI-RVSIKDIRETGRNASGVKLI 797
>gi|440286851|ref|YP_007339616.1| DNA gyrase, A subunit [Enterobacteriaceae bacterium strain FGI 57]
gi|440046373|gb|AGB77431.1| DNA gyrase, A subunit [Enterobacteriaceae bacterium strain FGI 57]
Length = 878
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/855 (41%), Positives = 535/855 (62%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD++++TV++V N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLEKETVDYVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + T++ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+KS R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVET-DAKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK++L AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + V L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++ +F R + + A++ ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREELELVREQFGDNRRTEIT-ANTADINIEDLISQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + D V + S G V+ D +R++ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L DK+ S+ IIP +G +L V+++G+GKR
Sbjct: 720 GVRGIKLAGEDKVVSL-IIP------------------RGEGA--ILTVTQNGYGKRTAA 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + + VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATQGVISIKVTERNG----SVVGAVQVDDC---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
+SI R +GVIL+R
Sbjct: 812 VSIVGRNTQGVILIR 826
>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
Length = 884
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/876 (41%), Positives = 541/876 (61%), Gaps = 67/876 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ LG KP
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD+++DTV+FVPN+D +++ P+++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D ALI + T+ L+E++PGPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 VRARAEVEA-DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY LT LQ +F NMV + GQPK + LKE+L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I ++R A + + A A L
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ I +L +L + + ++++I +E++ +K +++ R + + A++ ++ D+I +++
Sbjct: 481 LLTLIAELIFILENPERLMEVIREELVAIKEQYNDARRTEI-TANTSDINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + V + S G V+ +RS+ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L D++ S+ IIP +G +L V+E+G+GKR +
Sbjct: 720 GVRGINLNGDDRVISL-IIP------------------RGDG--EILTVTENGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K S + VVG A +Q+++++ +GT+ R +V +
Sbjct: 759 EEYPTKSRATQGVISIKVSERNGK----VVG---AVQVAPTDQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
+S+ R +GV L+R + L V EPE D
Sbjct: 812 VSVVGRNTQGVTLIRTAEDEHV--VGLQRVAEPEED 845
>gi|393757472|ref|ZP_10346296.1| DNA gyrase subunit A [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393165164|gb|EJC65213.1| DNA gyrase subunit A [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 897
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/891 (41%), Positives = 536/891 (60%), Gaps = 76/891 (8%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L EEM SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAMHEL + +KK AR
Sbjct: 9 LPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSAR 68
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VR+AQDFS+RY L+ G GNFGSID D AAAMRYTE RL
Sbjct: 69 IVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYTLVDGQGNFGSIDGDNAAAMRYTEIRLA 128
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
++ LLADIDQ+TV+FVPN+D S+KEP+LLP+RLP LL+NG+SGIAVGMATNIPPHNL
Sbjct: 129 KIAHE-LLADIDQETVDFVPNYDGSEKEPALLPSRLPNLLVNGSSGIAVGMATNIPPHNL 187
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
E+V+ + +PE T+ EL+EY+P PDFPTG +I G G+ + YRTGRGR+ +R T
Sbjct: 188 AEVVNGCLYCLSHPECTVDELIEYIPAPDFPTGAIIYGMSGVREGYRTGRGRVIMRASTH 247
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
E ++ K R +++ IPYQ NK L E+IAELV K ++GISDIRDESD+ GMR+VIE
Sbjct: 248 FEDME-KGNRQAIVVDAIPYQVNKKSLQERIAELVNEKRIEGISDIRDESDKDGMRLVIE 306
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKRG P +V+N+LY+ T LQ +F NMV ++DGQP+ + LK+++ FL R VV RR
Sbjct: 307 LKRGEVPEVVLNNLYKNTQLQETFGMNMVALVDGQPRLLNLKQLVDYFLSHRREVVTRRT 366
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------------- 488
F+L + +ER H++EG+ V L N+D I I++ AP+ A L
Sbjct: 367 VFQLRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPVARVELMARSWDSGLVREMLAR 426
Query: 489 ------------------KDEF--------KLSEKQADAILDMNLRRLTMLERKKFVDES 522
DEF +LS+ QA IL+M L+RLT LE+ K V E
Sbjct: 427 ADTSAIVGGRQAYRPDDLGDEFGMSSDGLYRLSDVQAQEILNMRLQRLTGLEQDKIVQEY 486
Query: 523 KTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP----RLSMLEDADSGQLDDIDI 578
+ +M++I L ++LS+ + +I E+I +++ FS R S +E ++ +LD D+
Sbjct: 487 REVMDKISDLLDILSNPTRVSAIIGDELIAVRDEFSATGKDVRRSQIE-HNATELDTEDL 545
Query: 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYF 638
I +M++ +S GY+K + + Q RG GK ++ +D + + HD++L F
Sbjct: 546 ITPMDMVVTLSHTGYIKSQPLSEYRAQRRGGRGKQATAMKEDDWIDKLFIANTHDYLLCF 605
Query: 639 SDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG 698
S+RG VY + +++P+ +RN+ G P+V + L +GE+I ++ V EF+ DQF+ M T G
Sbjct: 606 SNRGRVYWLKVWEVPQGSRNSRGRPIVNMFPLEEGEKINVVLSVKEFSEDQFVFMATSRG 665
Query: 699 YIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS 758
+KK L+ FS+ R GIIA+ L GD L + V + S G + +R
Sbjct: 666 TVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGAQLTDGVHDVMLFSDAGKAVRFDEGDVRP 725
Query: 759 LSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGH 818
+ R RG M L++G + ++ + ED +V L +++G
Sbjct: 726 MGRAARGVRGMTLEEGQSVIALLV------------AEDETQSV--------LTATQNGF 765
Query: 819 GKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVN 878
GKR P+ + + G+I + SA + VVG L E+DE ++L++ +G +
Sbjct: 766 GKRTPIGEYTRHGRGTKGMIAIQTSARNGK----VVGAVLVR--ETDE-IMLITNAGVLV 818
Query: 879 RIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDK 929
R +V +I R +GV L+ ++ ++ + T+ E D L +++
Sbjct: 819 RTRVAEIREMGRATQGVTLISVDDDSELSGVYRVVETDDEVDAELADQAEQ 869
>gi|326802622|ref|YP_004320440.1| DNA gyrase subunit A [Aerococcus urinae ACS-120-V-Col10a]
gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
Length = 880
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/862 (40%), Positives = 536/862 (62%), Gaps = 42/862 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P E+ EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP+KK AR+
Sbjct: 10 PREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARI 69
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+V+GK+HPHGD+A+Y+S+VRMAQDFS RY L+ GHGNFGS+D D AAAMRYTE RL
Sbjct: 70 VGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARLSK 129
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++ M+ DI+++TV+F+PN+D ++EP +LP+R P LL+NGA+GIAVGM TNIPPHNL
Sbjct: 130 IALEMV-RDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNIPPHNLS 188
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E++ L L+ NP+AT Q+L+E +PGPDFPT G+++G GI AY TG+GRI VR + E+
Sbjct: 189 EVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIVRARAEI 248
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+ + S +R +I+ EIPY NK+ LVE+IA+L +K +DGI+ +RDE+ R GMRIVIE
Sbjct: 249 DTMASGKER--IIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRIVIEC 306
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
++ A S+++N+L++ T +Q++F+ NMV I G PK + LK++L+ +LD + ++ RR+
Sbjct: 307 RKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIRRRSI 366
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+ + + R HI+EG+ + LD++D ++ I+R + + A D++ LS+KQA AILDM
Sbjct: 367 FEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYGLSDKQAQAILDM 426
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
L RLT LER+K +E K LM +I L E+L+S + ++I QE++E++ RF R + +
Sbjct: 427 RLVRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRFGDERRTEI 486
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ L+D D+I +L+ +S KGY+KR++ + + QNRG G L+ D +
Sbjct: 487 RVGEITNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGGRGVKGMALQDGDHIDA 546
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS-- 683
+ HD +L F+DRG V+ + Y+IPE R A G P+V +L+L + E++ +I V+
Sbjct: 547 MLSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLNLQEDEQVRGVINVTPS 606
Query: 684 --EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E + + +T G +K+ + + +IR G+IAI L DEL V + +D + +
Sbjct: 607 DKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDDELVAVLQTSGEDNIIL 666
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
S G + + D +RS+ R G +RL D + I+
Sbjct: 667 GSHQGYAVSFAEDDVRSMGRTATGVRGIRLDQDDYVVGASIL------------------ 708
Query: 802 VKGSSGP--WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
GP +L V+E G+GKR P + G+ + ++ +VG +
Sbjct: 709 -----GPDQDVLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKNGP----LVGLATV 759
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
+ DE ++L++ G V R DIS R +GV LMRL+ + + + +++ E +
Sbjct: 760 ---DLDEDIMLMTDEGVVIRFHSVDISQTGRATQGVRLMRLDEAAHVSTMAVVDPEEVDE 816
Query: 920 DLFL---PSTSDKLATESGVSE 938
+ + P + ATE+G+S+
Sbjct: 817 EEVVASDPEQRGQYATETGLSD 838
>gi|423188807|ref|ZP_17175417.1| DNA gyrase, A subunit [Brucella abortus bv. 1 str. NI259]
gi|374558465|gb|EHR29858.1| DNA gyrase, A subunit [Brucella abortus bv. 1 str. NI259]
Length = 918
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/898 (41%), Positives = 535/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 8 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 67
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 68 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 127
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 128 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 186
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 187 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 246
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 247 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 305 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 365 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 424
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 425 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 484
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 485 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 543
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 544 PLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTP 603
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 604 QSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 663
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G + L
Sbjct: 664 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLA 723
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 724 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 783
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 784 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 841
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + K+ S IS
Sbjct: 842 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERIS 892
>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
Length = 816
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/827 (44%), Positives = 535/827 (64%), Gaps = 35/827 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP++ +EM +Y+ YSMSV++GRALPDVRDGLKPV RR+LFAM E+G+ S P++K A
Sbjct: 9 VVPID--DEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSA 66
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD AVYD+ VR+ Q F+LRYPLI G GNFGS+D D AAMRYTE RL
Sbjct: 67 RIVGDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRL 126
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
EALSE M+ ++ TV F PN+DES +EP +LPARLP LLLNG++GIAVGMATNIPPHN
Sbjct: 127 EALSEEMMAELEEE-TVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHN 185
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
+ E++D L ALI NP+ ++ +LL + GPDFPTGGLIMG GI A RTGRG I +RG
Sbjct: 186 ITEIIDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVA 245
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E +++ RM +II+EIPYQ NK+ L+E+IAELV L+GI+DIRDESDR GMR+VI
Sbjct: 246 DIEE-STRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVI 304
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
+LKR A+P +V+N LY T LQ+SF N V +++ +P + L+E L FL FR VV RR
Sbjct: 305 DLKRDANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALAHFLSFRQDVVTRR 364
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + ++R HI+EG+ +D +D++I ++R + S A L ++F SE QA AIL
Sbjct: 365 TLFRLRKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAIL 424
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L+RLT LER K E + + IL LEE+L SR ++ +I +E + L+ + R +
Sbjct: 425 DMRLQRLTALERDKIDAEYEEVRVLILGLEEILGSRSRLMAVIREEFMALRENYGDARKT 484
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D G++ +IPND + ++ +GY+KR+ + + Q RG G+S L+ +DA+
Sbjct: 485 RIVPED-GEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAV 543
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
+ AH+ +L+F+D G VY +A++IPE R A G P+ L L+ E++T ++ V+
Sbjct: 544 IITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPIRGFLPLAPEEKVTRMLNVA 603
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
F G++ LV +T+NG IK+ +L+ +SSIR +GIIA+ L GD L V D V +A+
Sbjct: 604 SFEGERSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVAEADSHVLVAT 663
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
+ GM IL + R G A+RL++ D++A +I+ E P
Sbjct: 664 RRGMAILFPIHEVTEQGRTASGVRAIRLREEDRVADAEIV-------TETDP-------- 708
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDG 862
+ V+E G+GKR+ ++ FR G +G K S +++ AV SL + G
Sbjct: 709 ------VAVVTEKGYGKRLDVAKFRH---QHRGGMGLKISRGAEKIGAV----VSLVKAG 755
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSA 909
+D+ ++ S+ G NR++ ++ R A+GVI+MRL I SA
Sbjct: 756 NTDDLTIITSK-GVTNRVQANELRTMGRSAQGVIVMRLADDDTIVSA 801
>gi|347533759|ref|YP_004840429.1| DNA gyrase subunit A [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345503815|gb|AEN98497.1| DNA gyrase subunit A [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 840
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/832 (40%), Positives = 531/832 (63%), Gaps = 35/832 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI V+L ++M S++ Y+MSV++ RALPDVRDG+KPV+RRIL+ M +LG++ KP+KK
Sbjct: 16 RITNVDLSKKMKSSFLDYAMSVIVARALPDVRDGMKPVNRRILYGMDQLGVTPEKPYKKS 75
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQ+FS RY L+ GHGNFGS+D D AAAMRYTE R
Sbjct: 76 ARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 135
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L +S ML D+++DTV+FVPN+D +++EP +LPAR+P LLLNGA+GIAVGMATNIPPH
Sbjct: 136 LSKISMEML-RDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPPH 194
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++ + L+ NP+A + +L+E +PGPDFPTGG++MG GI AY TGRG I VR K
Sbjct: 195 NLAEVISAIHILMKNPDADVNDLMEVLPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSK 254
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
T++E + K+ + + + E+PY NK+ L+E+IAELV +K ++GIS I DESDR GMRI
Sbjct: 255 TDIE--EDKNGKQTIAVTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIA 312
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
I+++R A +V+N+L++LT +Q+SFS NM+ I++G PK + LKE+L ++L+++ V+ R
Sbjct: 313 IDIRRDASAEVVLNNLFKLTLMQTSFSFNMLAIIEGAPKILSLKEILNSYLNYQVEVITR 372
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R RF L + + R HI+ G+++ LDN+D++I I+R + + A L +F L +KQA AI
Sbjct: 373 RTRFNLKKAQARAHILVGLLIALDNIDKIITIIRGSKTADIAKHELISQFDLDDKQAQAI 432
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L RLT LER K DE + L+ QI +E+L+S + + ++I E+++++ RF R
Sbjct: 433 LDMRLVRLTGLERGKINDEHEKLLAQIKDYKEILASHERVNEIIYNELLDIQKRFGDDRR 492
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ L + ++D D+I + + + ++ GY+KR+ + F QNRG G+ + + VN
Sbjct: 493 TELMIGEITNIEDEDLIEDKNVTITLTHNGYIKRIPTDDFKTQNRG--GRGIKGMGVNKD 550
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + I HD +L+F++ G VYS + Y++PE R+A G P+V +++L + E+I +++
Sbjct: 551 DFIEHLINGSTHDLLLFFTNAGKVYSMKVYEVPEYGRSAKGLPIVNLINLGEKEKIQTVL 610
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V ++L T G +K+ ++ F++IR G+ AI L DEL V + +
Sbjct: 611 RVDGDGEHKYLFFTTKLGTVKRTPIDEFTNIRNNGLKAINLHDDDELIKVSLVDGNQNMI 670
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + G + + +RS+ R+ G +RL+D D + I+ TP
Sbjct: 671 IGTHLGYAVSFKVEDVRSMGRSASGVRGVRLRDDDYVIGASIL----------TP----- 715
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860
G + +SE+G+GKR P++ + P+ G G K S VG +
Sbjct: 716 ------GSDVFVISENGYGKRTPVNQY---PIKGRGGKGIKTSNVTEKNGPL-VGLGVV- 764
Query: 861 DGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
DE ++L++ G + R ++S R GV L+R+ + + +++
Sbjct: 765 --NGDEDIMLITDQGVMIRFAAGNVSETGRSTLGVHLIRVADDSTVATMAIV 814
>gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
Length = 811
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/838 (42%), Positives = 548/838 (65%), Gaps = 40/838 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+S R + EL E SY+ YSMSV++ RALPDVRDGLKPVHRRILFAM+E+G+++ KP
Sbjct: 3 NISNRYIEEELKE----SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKP 58
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
FKK AR+VGEVLGK+HPHGD AVY+++VRMAQ+F+ RY L+ GHGNFGSID D AAAMRY
Sbjct: 59 FKKSARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRY 118
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ A LL DID++T++F NFD+S EP++LP++LP LLLNG++GIAVGMATN
Sbjct: 119 TEARMSKIT-AELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATN 177
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGELVD LI NPE + EL+EY+ GPDFPTGG+I G GI DAY TGRG+I
Sbjct: 178 IPPHNLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIR 237
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VRGK ++E ++K+ + +II+EIPYQ NKS L+E+IA LV+ K + GI D+RDES+R G
Sbjct: 238 VRGKVKIE--ENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREG 295
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELK+G +P +V+N LY+ T LQS+F M+ +++ PK + LK++L ++ R
Sbjct: 296 IRVVIELKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQ 355
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
V+ RR F L + ++R HI++G + L+N++R+I ++R + + A L +++ +E Q
Sbjct: 356 VITRRTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQ 415
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
A +ILDM L+RLT LER+K E + L + I++L+++LS I +++QE++++K+ +
Sbjct: 416 AKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTYG 475
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
R + +E+ L + D+I ++EM++ + KGY+KR++ N + QNRG GK V L
Sbjct: 476 DKRRTHIEEERMEILPE-DLIKDEEMIITCTNKGYIKRIEANKYKSQNRG--GKGVTGLN 532
Query: 619 -VNDAMSDFIVCRAH-DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERI 676
++D + D I+ ++ D ++ F+D+G VY+ + Y++PE +R + G + +L + + E+I
Sbjct: 533 TIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKI 592
Query: 677 TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TN 735
+II F ++ LV +T G +KK SL F +I T G+IAI+ D+L +V
Sbjct: 593 RAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAA 652
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
++ V +A++ G + D +R RNT G + L++GD +++ A L K+ E
Sbjct: 653 ENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGD-----EVVSALLIKEKEMD- 706
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+L ++E+G+GKR L + NR G ++ + V
Sbjct: 707 --------------ILTITENGYGKRTRLDEYP--SHNRGGKGVINLRCNEKTGNIVSVL 750
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
+L E E++V ++ +G + R + IS +R A+GVI+M++ L K+ S + I
Sbjct: 751 TALDE-----EELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803
>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
gi|9789773|sp|Q9ZLD9.1|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/823 (43%), Positives = 540/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L ++LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+ + +++++ S + R+ ++DI R A GV L+
Sbjct: 761 ------DDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>gi|358061293|ref|ZP_09147947.1| DNA gyrase, A subunit [Clostridium hathewayi WAL-18680]
gi|356700052|gb|EHI61558.1| DNA gyrase, A subunit [Clostridium hathewayi WAL-18680]
Length = 849
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/844 (41%), Positives = 530/844 (62%), Gaps = 41/844 (4%)
Query: 78 PNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRK 137
PN+ ++ ++L + M SYI Y+MSV+ RALPDVRDGLKPV RR+LF+M EL K
Sbjct: 3 PNIFDKVHDIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDK 62
Query: 138 PFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMR 197
P +KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMR
Sbjct: 63 PHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMR 122
Query: 198 YTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMAT 257
YTE RL +S ML ADI +DTV+FVPNFDE++KEP++LP+R P LL+NG SGIAVGMAT
Sbjct: 123 YTEARLSKISMEML-ADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181
Query: 258 NIPPHNLGELVDVLCALI-----HNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRT 312
NIPPHNL E+++ + +I N E +++E+LE + GPDFPTG I+G +GI +AYRT
Sbjct: 182 NIPPHNLREVIEAVVKIIDNYVEENRETSIEEILEIVKGPDFPTGATILGKMGIEEAYRT 241
Query: 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRD 372
GRG+I VR T +E + + R +I+ E+PY NK+ L+EKIAELV+ K +DGI+D+RD
Sbjct: 242 GRGKIRVRAVTNIEAMPNGKNR--IIVTELPYMVNKARLIEKIAELVKEKRIDGITDLRD 299
Query: 373 ESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAF 432
ESDR+GMRI IEL+R + ++++N L + T LQ +F M+ +++ +P+ + + ++L+ +
Sbjct: 300 ESDRTGMRICIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNICQMLKYY 359
Query: 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF 492
L+ + VV RR ++ L++ +ER HI++G+++ LDN+D VI+I+R + + A L + F
Sbjct: 360 LEHQKEVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVIKIIRGSKNVQAAKEELINRF 419
Query: 493 KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552
L++ QA AI+DM LR LT LER+K +E + L +I L+ +L+ +L +I++E+I
Sbjct: 420 GLTDAQAQAIVDMRLRALTGLEREKLENEYRELEIKIADLKAILADEHRLLGVIKEEIIM 479
Query: 553 LKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK 612
+ +++ R + + D + D+IP+++ ++A++ GY+KRM + F QNRG GK
Sbjct: 480 ISDKYGDDRRTAI-GFDEFDMSMEDLIPDEDTIVAMTNLGYIKRMSVDNFKSQNRG--GK 536
Query: 613 SVGKLRV--NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL 670
+ ++ D + D I+ H ++++F++ G VY + Y IPE R A GT +V +L L
Sbjct: 537 GIKGMQTIEEDFIEDLIMTTTHHYIMFFTNTGRVYRLKTYMIPEAGRTARGTAIVNLLQL 596
Query: 671 SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730
GE+IT+IIP+ E+ D++L M T NG +KK + + ++R G+ AI L DEL V
Sbjct: 597 LPGEKITAIIPMKEYHEDKYLFMATKNGMVKKTPMKEYENVRKNGLQAIVLREDDELIEV 656
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
+ N + + ++ G I +R R + G + M+ +GD++ M +
Sbjct: 657 KATDNTKDIFLVTKKGQCIRFHETDVRVTGRVSMGVIGMKFDEGDQVIGMQM-------- 708
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAA 850
S G LL VS +G GKR P+ F G+ YK D+
Sbjct: 709 -------------DSQGECLLVVSANGMGKRTPIEEFTPQYRGGKGVRCYKIV--DKTGD 753
Query: 851 VFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+VG L D D ++L++ G + R+ V DIS+ R GV LM ++ I AS
Sbjct: 754 --LVGAKLVHD---DHDIMLITTEGIIIRMSVSDISVIGRNTSGVKLMNIDHDSDISVAS 808
Query: 911 LISV 914
+ V
Sbjct: 809 VAKV 812
>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|338818199|sp|D8K235.1|GYRA_DEHLB RecName: Full=DNA gyrase subunit A
gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 814
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/825 (41%), Positives = 527/825 (63%), Gaps = 44/825 (5%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM +LG+ +KK AR+
Sbjct: 8 PINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ+FSLRY L+ G GNFGS+D DP AAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEARLTR 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
L+ LL DID+DTV F+PNFD+S KEP++LP+RLP LL+NGASGIAVGMATNIPPHNL
Sbjct: 128 LA-GELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHNLT 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL D + LI NPE L++L++++ GPDFPTGGLI+G GI AY TG G++ VR + V
Sbjct: 187 ELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARAHV 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+ R +II E+PYQ NK+ LV++IA L + ++GI+++RDESDR G+R+VIEL
Sbjct: 247 ADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVIEL 306
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR +P ++N+LY+ T LQ+SF NM+ +++ +P + LKE L ++ FR ++ RR++
Sbjct: 307 KRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRRSK 366
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L + R HI+EG+ + LDNLD +I ++R A + TA L F+LS+ QA AILD+
Sbjct: 367 FELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQLQAQAILDL 426
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K + E +++QI LE+LL++ + +L L++ ++ E+K R+ R + +
Sbjct: 427 QLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARYGDARRTEI 486
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ + + D+IP+ M++ ++E+G++KR+ + LQ+R GKS+ K R D++
Sbjct: 487 QSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKTREADSVRF 546
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+V HD VL F++RG ++S + ++IP + R A G ++ ++ L++ ERITS+I VS
Sbjct: 547 IMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSMIAVSR 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F + L+M T G K+ L+ F+++R++G++A+ L DEL D+ + + +
Sbjct: 607 FDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGADENIILITH 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
NG I +R R + G + L+ D++A +D+
Sbjct: 667 NGRSIHFPVADLRVSQRASGGVRGITLEGDDRVAGLDV---------------------A 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYK-FSAEDRLAAVFVVGFSLAE 860
G ++L V+ G+GK L++ + PL R G++ +K ++AA VV
Sbjct: 706 RPGHFVLVVTTGGYGK---LTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGKVV------ 756
Query: 861 DGESDEQVVLVSQSGTVNRIKV------RDISIQARYARGVILMR 899
+ + QV++ + G V R V + I + R +GVI++R
Sbjct: 757 --DREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIR 799
>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
gi|376273170|ref|YP_005151748.1| DNA gyrase subunit A [Brucella abortus A13334]
gi|384408573|ref|YP_005597194.1| DNA gyrase subunit A [Brucella melitensis M28]
gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
gi|363400776|gb|AEW17746.1| DNA gyrase subunit A [Brucella abortus A13334]
Length = 934
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/898 (41%), Positives = 535/898 (59%), Gaps = 81/898 (9%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + EEM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+ L+ +P++K A
Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GK+HPHGD ++YD+LVRMAQDFS+R PLI G GNFGSID DP AAMRYTECRL
Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E ++E+ LL+DID+DTVNF N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 144 EKVTES-LLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 202
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D ALI NP L EL+E +PGPDFPTGG+I+G GI AY TGRG + +RG+
Sbjct: 203 LGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRA 262
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E + + R +II EIPYQ NK+ ++EK+AELV +K +DGISD+RDESDR G R+V+
Sbjct: 263 TIEPM--RGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 320
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A +V+N LYR T LQ+SF CNMV + G+P+Q+ L ++L+AF+ FR VV RR
Sbjct: 321 ELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRR 380
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL--------------- 488
+F L++ ++R H++ G+ + + N+D VI ++R AP +TA L
Sbjct: 381 TKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIR 440
Query: 489 -----------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ + LSE+QA AILD+ L+RLT L R + DE + E+I ++L
Sbjct: 441 LIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILG 500
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR ++ ++++E+I +++ F+TPR + + ++DD D+I ++M++ +S GY+KR+
Sbjct: 501 SRLRVMNIVKEEMIAVRDEFATPRRTEI-GFGGAEMDDEDLIAREDMVVTVSHAGYIKRV 559
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
T+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 560 PLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTP 619
Query: 658 NAAGTPLVQILSLSDGERITSIIPV--SEFAGDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E + VM T G +++ L+ F +
Sbjct: 620 QSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 679
Query: 715 GIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + G I +R + RN+ G + L
Sbjct: 680 GKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLA 739
Query: 773 DGDKMASM------DIIPAALHKDLERT----------------------------PEDS 798
+GDK+ SM D PA L+R+ ED
Sbjct: 740 EGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDR 799
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED---RLAAVFVVG 855
+ +K +L VSE G+GKR FR G+ S D +L A+F V
Sbjct: 800 YQELKARE-ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPV- 857
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
E +Q++LVS G + R+ V I I R +GV + K+ S IS
Sbjct: 858 -------EGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERIS 908
>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
gi|149753025|gb|EDM62956.1| DNA gyrase, A subunit [Dorea longicatena DSM 13814]
Length = 837
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/856 (41%), Positives = 540/856 (63%), Gaps = 40/856 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N+ ++ V+L + M SYI Y+MSV+ RALPDVRDGLKPV RRI+++M EL KP
Sbjct: 4 NIFDKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKP 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KCAR+VG+ +GK+HPHGD+++Y +LV MAQ++S RYPL+ GHGNFGS+D D AAAMRY
Sbjct: 64 HRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL +S L ADI+++TV+F+PNFDE++KEP++LP+R P LL+NG SGIAVGMATN
Sbjct: 124 TEARLSKIS-MELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHN-----PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTG 313
IPPHNL E+++ + +I + E T++E+L+ + GPDFPTGG+I+G GI +AYRTG
Sbjct: 183 IPPHNLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRTG 242
Query: 314 RGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE 373
RG+I VR T++E + + R +I+ E+PY NK+ L+EKIAELV +K +DGI+D+ D+
Sbjct: 243 RGKIRVRAVTDIETMPNGKSR--IIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQ 300
Query: 374 SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFL 433
S R GMR+VIEL+R A+ ++++N LY+ T LQ +F M+ ++ +PK M L E+L +L
Sbjct: 301 SSREGMRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLMEMLNYYL 360
Query: 434 DFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFK 493
+ VV RR +++L++ +ER HI++G+++ LDN+D VI+I+R + + A + L + F
Sbjct: 361 KHQEEVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFG 420
Query: 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553
L++ Q+ AI+DM LR LT LER+K E K LMEQI L +L+ RK +L +I++E++ +
Sbjct: 421 LTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAILADRKLLLGVIKEEILVI 480
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG-K 612
++++ R + + D + D+IP +++++ +++ GY+KRM +TF QNRG G K
Sbjct: 481 RDKYGDERRTSI-GFDEFDISMEDLIPREDVVITMTKLGYIKRMSHDTFKAQNRGGKGIK 539
Query: 613 SVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSD 672
+ KL D + + + H ++++F++ G VY +AY+IPE +R + GT +V +L L
Sbjct: 540 GMQKLD-EDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEASRTSRGTAIVNLLQLMP 598
Query: 673 GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRC 732
GE+I+++IP+ ++ D++L+M T G IKK + ++++R TG+ AI L DEL V+
Sbjct: 599 GEKISAVIPIEKYNDDEYLLMATKKGLIKKTPIKEYANVRKTGLAAITLREEDELIEVKY 658
Query: 733 CTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLE 792
+D V M ++ G I + +R R + G M L D D++ M I
Sbjct: 659 TDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGVRGMNLVDRDEVIGMQI---------- 708
Query: 793 RTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVF 852
S G LL VSE G GKR + F G+ YK + +
Sbjct: 709 -----------DSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEK----TGN 753
Query: 853 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQS-ASL 911
VVG ++ D ++++++ G + R+K IS R GV L+ L K+ A +
Sbjct: 754 VVGVKAVDE---DNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIAKV 810
Query: 912 ISVTEPETDLFLPSTS 927
E E DL P S
Sbjct: 811 RRGDESEDDLVEPEES 826
>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
Length = 815
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/828 (41%), Positives = 533/828 (64%), Gaps = 36/828 (4%)
Query: 92 EMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG 151
E+ S++ YSMSV++ RALPDVRDGLKPVHRRIL+A ++LGL+ KP+KK A VVGEV+
Sbjct: 16 EIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYKKSAFVVGEVMA 75
Query: 152 KFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAML 211
K+HPHGD+A Y ++VR+AQDF+ RYPL+ G GNFGSID D AAAMRYTE R+ ++ + L
Sbjct: 76 KYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMRYTEARMSKIA-SEL 134
Query: 212 LADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVL 271
L DI++DTV+ N+D +++EP +LPAR+P LL+NG+SGIAVGMATNIPPHNLGE++D +
Sbjct: 135 LRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGV 194
Query: 272 CALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSK 331
AL N E T+ EL+ + GPDFPTG ++G GI+ AY TGRG + +RGKTE+E + +
Sbjct: 195 IALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVIMRGKTEIEQMKNG 254
Query: 332 SKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391
+R ++I EIPYQ NK+ LVEKIAEL +K ++G++D+RDES+ G+RIVIEL+R +
Sbjct: 255 KER--IVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIRIVIELRRDVNS 312
Query: 392 SIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQV 451
++++N+LY+LT LQSSF NM+ +++G PK + LKEVL +L+ + VV RR +F L +
Sbjct: 313 NVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVVVRRTKFDLKKA 372
Query: 452 KERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLT 511
+ R HI+EG+ + LDN+DR+I ++R + + A A L D+F L+E QA AILDM L+RLT
Sbjct: 373 QARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQAQAILDMRLQRLT 432
Query: 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSG 571
LER K +E LME I LE++L+ + ++Q+++ E++E+K +F R S++ +
Sbjct: 433 GLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVD 492
Query: 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA--MSDFIVC 629
Q+++ D+I +++++ +S Y+KR+ +T+ Q RG G+ V + ND ++ + C
Sbjct: 493 QIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRG--GRGVNGMTTNDEDNVAYMLSC 550
Query: 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD- 688
HDH+L+F+D+G VY+ + Y+I + +R + G P++ +L + E++ SII +S+ +
Sbjct: 551 STHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEG 610
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMV 748
L+ T G IKK L ++SI G IA++L D L V+ T+D + + + NG
Sbjct: 611 TSLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQA 670
Query: 749 ILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808
I + + +R++ R +RG + L D + M+++ +
Sbjct: 671 IRINAEKVRTMGRVSRGVKGITLSPDDYVVGMEVVDES---------------------K 709
Query: 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQV 868
+L V+E+G GK + F +NR G G K + + V S+A +E +
Sbjct: 710 KILTVTENGIGKISKSTEFN--VINRGGK-GVKVAKVTKKTGKIVAVKSIA----GNEDL 762
Query: 869 VLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
++++ G + RI V IS R A GV ++ L K+ + +L + E
Sbjct: 763 MIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEE 810
>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 818
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/837 (42%), Positives = 506/837 (60%), Gaps = 49/837 (5%)
Query: 98 ITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHG 157
+ Y++S+++GRA+PD RDGLKPVHRRIL+AM +L L +KCARVVGEVLGKFHPHG
Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60
Query: 158 DNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQ 217
D AVYD+LVR+AQ FS YPLI GHGNFGSIDADPAAAMRYTECRL LS+A LL D+
Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120
Query: 218 DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHN 277
DTV+F+PNFD ++ EP++LPA+LP LLLNG+SGIAVGMATNIPPHNL E++ AL+
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180
Query: 278 PEA----TLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSK 333
+ T ++LL+ +PGPDFPTG I+ G Y TG G I +R T++E + + K
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240
Query: 334 ----RMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGA 389
R +I+ E+PYQ NK+ L+EKIA LV K LDGI+D+RDESDR G+R+VIELKR A
Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300
Query: 390 DPSIVVNSLYRLTALQSSFSCNMVGILDGQ--------PKQMGLKEVLQAFLDFRCSVVE 441
++V+N+LY+ T LQ++FS N + ++ P++ L++ + FLDFR +
Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
R+++F+L++V R HIV G+++ LD +D VI+IVR + A AL E S +Q DA
Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSEQTDA 420
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
IL + L +LT L + K E L E L LL + ++ +E I++ RF R
Sbjct: 421 ILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRFGGER 480
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK---SVGKLR 618
S + D G D+D+I N ++ ++ GY+KRM TF Q RGT GK S G
Sbjct: 481 KSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKRGTSDGGES 540
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+ ++ C HD +L + GI Y RAY++P R A G P+ +L + E IT+
Sbjct: 541 ADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPVRGDEVITA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
I+PVSEF+ ++++V+ T G+IK+ L+ F + + G+ L GD LKW N+D
Sbjct: 601 ILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDD 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + + GM +R R +RG AM+L++GD +A M+++
Sbjct: 661 ILIGTVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVL--------------- 705
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF---SAEDRLAAVFVVG 855
G + ++L V+ G+GKR+ S FR VG+I KF ED+++ + +V
Sbjct: 706 ----SGKNKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ DE++++++ G + R K DI Q R A GV++ R++ I S S++
Sbjct: 761 -------KDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIV 810
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 581 NDEMLLAISEKGYVKRMKPNTF-NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFS 639
++E ++ +E+G++KR + F L +RG ++ L D + R D +L +
Sbjct: 609 DEEYVVLTTEQGWIKRTPLDAFEKLSSRGL---TIATLEDGDRLKWCHRVRNEDDILIGT 665
Query: 640 DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699
G+ A K+ R + G V+ + L +G+ I + +S ++++ +T GY
Sbjct: 666 VGGMATRFGAAKLRPTGRTSRG---VRAMKLREGDTIADMNVLSG-KNKEYILTVTAQGY 721
Query: 700 IKKVSLNLFSSIR--TTGIIAIQLVPGDELKWVRC---CTNDDLVAMASQNGMVILSSCD 754
K+++ + F + G+IAI+ G E V C +D+ + + + G+++
Sbjct: 722 GKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEEILVITARGIMVRQKAS 781
Query: 755 IIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784
I S R+ G + R+ DGD ++S+ I+P
Sbjct: 782 DIPSQGRSATGVMVQRVDDGDHISSVSIVP 811
>gi|423713076|ref|ZP_17687336.1| DNA gyrase, A subunit [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395424702|gb|EJF90882.1| DNA gyrase, A subunit [Bartonella vinsonii subsp. arupensis
OK-94-513]
Length = 926
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/899 (41%), Positives = 540/899 (60%), Gaps = 77/899 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL AM+E+GLS K ++K A
Sbjct: 16 IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
VVGEV+GKFHPHGD ++YD+LVRMAQDFSLR PLI G GNFGS+D DP AAMRYTECRL
Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
E +SE LLADID+DTV+F N+D ++EP +LPAR P LL+NG+ GIAVGMATNIPPHN
Sbjct: 136 EKVSEE-LLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE+VD ALI NP+ TL E+++ +PGPDFPTGG+I+G+ GI AY TGRG I +R K
Sbjct: 195 LGEVVDGCIALIDNPDITLDEIIQIIPGPDFPTGGIILGHSGIRLAYETGRGSIIMRAKV 254
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
++E + ++ R +I+ EIPYQ NK+ ++EK+AELV +K ++GISD+RDESDR G R+VI
Sbjct: 255 DIEEI--RNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVI 312
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ A IV+N LYR T LQ+SF CNMV + G+P+QM L ++L+AF+ FR VV RR
Sbjct: 313 ELKKDAVAEIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRR 372
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
++ L + +ER H++ G+ + + N+D +I ++R+AP TA L +
Sbjct: 373 TKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARTQLMERRWPAFDVAPLIK 432
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+ LSE+QA AIL++ L+RLT L R + DE + I ++L+
Sbjct: 433 LIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILA 492
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR I+ +++ E+ L+ F+TPR ++ S ++D D+I ++M++ +S GY+KR+
Sbjct: 493 SRLRIMGIVKDELRTLREEFATPRRTVF-GFGSAEMDSEDLIAPEDMVVTVSHSGYIKRV 551
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
NT+ Q RG G+S + D ++ V H VL+FS RGIVY + +++P T
Sbjct: 552 PLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSSRGIVYKEKVWRLPLGTP 611
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQF---LVMLTMNGYIKKVSLNLFSSIRTT 714
+ G L+ +L L GERIT+I+P+ E ++ T G +++ L+ F +
Sbjct: 612 QSRGRALINLLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRN 671
Query: 715 GIIAIQL-VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS-RNTRGSVAMRLK 772
G IA++L GDE+ V CT D V + + NG I +R + RN+ G + L
Sbjct: 672 GKIAMKLDEEGDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRVFAGRNSVGVRGINLA 731
Query: 773 DGDKMASMDIIPAALHKDLERTP------------------------EDSHSNVKGSSGP 808
+GDK+ SM ++ +ER+ ED S + +
Sbjct: 732 NGDKVISMTLLEHVEATSVERSAYVKRLINERRAAGADAEDIMNLDEEDGESETELTDER 791
Query: 809 W---------LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAV--FVVGFS 857
+ LL VSE G+GKR FR ++ G G + + + A + V F
Sbjct: 792 YAELKAREQMLLTVSEFGYGKRSSSYEFR---ISGRGGKGIRATDPSKTAEIGKLVAAFP 848
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
+ ++ +Q++LVS G + R+ V I I R +GV + K+ S IS +E
Sbjct: 849 V----KAQDQIMLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTAEGEKVVSVERISESE 903
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIG---------KSVGKLRVNDAMSDFIVCRAH 632
++MLL +SE GY KR F + RG G +GKL ++ F V +A
Sbjct: 799 EQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKL-----VAAFPV-KAQ 852
Query: 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGD 688
D ++ SD G + I R+ G V I + ++GE++ S+ +SE D
Sbjct: 853 DQIMLVSDGGQLIRVPVDGIRIAGRSTKG---VTIFNTAEGEKVVSVERISESEDD 905
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,086,027,994
Number of Sequences: 23463169
Number of extensions: 603011099
Number of successful extensions: 1707040
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10443
Number of HSP's successfully gapped in prelim test: 826
Number of HSP's that attempted gapping in prelim test: 1633208
Number of HSP's gapped (non-prelim): 17431
length of query: 941
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 789
effective length of database: 8,792,793,679
effective search space: 6937514212731
effective search space used: 6937514212731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)