BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002290
(941 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRA PE=2 SV=1
Length = 935
Score = 1394 bits (3608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/928 (76%), Positives = 798/928 (85%), Gaps = 26/928 (2%)
Query: 6 FTNTSPMALSSTL---RFSSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSR-TPILA 61
T + PMA S+ + RFS R SS RFLS PPP + P+ A
Sbjct: 12 LTQSKPMAFSTGITPSRFSG-----------LRKTSSELRFLS--SVTPPPRKQLRPVSA 58
Query: 62 SKDEER---NGNGSV------ATVGPNVSPRIVPVELHEEMTGSYITYSMSVLLGRALPD 112
+ EE GNGSV N R+V ELH+E T +Y++Y+MSVLLGRALPD
Sbjct: 59 RRKEEEVGDEGNGSVILRDRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPD 118
Query: 113 VRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDF 172
VRDGLKPVHRRIL+AMHELGLSS+KP+KKCARVVGEVLGKFHPHGD AVYDSLVRMAQDF
Sbjct: 119 VRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDF 178
Query: 173 SLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKE 232
SLR PLIRGHGNFGSIDADP AAMRYTECRLEAL+E+MLLAD++Q+TV+FVPNFD SQKE
Sbjct: 179 SLRSPLIRGHGNFGSIDADPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKE 238
Query: 233 PSLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGP 292
PSLLPAR+P LLLNGASGIAVGMATNIPPHNLGELVD L ALIHNPEATLQELLEYMPGP
Sbjct: 239 PSLLPARVPNLLLNGASGIAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGP 298
Query: 293 DFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLV 352
DFPTGG+IMGN+GIL+A+RTGRGR+ +RGKT++ELLDSK+KR +II+EIPYQTNK+ LV
Sbjct: 299 DFPTGGIIMGNIGILEAFRTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLV 358
Query: 353 EKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNM 412
EKIA+LVENK L+G+SDIRDESDRSGMRIVIELKRG+DP+IV+N+LYRLTALQSSFSCNM
Sbjct: 359 EKIADLVENKILEGVSDIRDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNM 418
Query: 413 VGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVI 472
VGIL+GQPK MGLKE+LQAFLDFRCSVVERRARFKLSQ +ER HIVEGI+VGLDNLD VI
Sbjct: 419 VGILNGQPKLMGLKELLQAFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVI 478
Query: 473 RIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKL 532
+R+A SN+ A+A+L+ EF+LSEKQA+AILD++LRRLT LER KFV+E K+L QI KL
Sbjct: 479 NTIRKASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKL 538
Query: 533 EELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKG 592
EELLSS+K ILQLIE+E IE+KN+F PR SMLED DSG L+DID+IPN+EMLLAISEKG
Sbjct: 539 EELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLAISEKG 598
Query: 593 YVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652
YVKRMKP+TFNLQNRGTIGKSVGKLRVNDAMSDF+VCRAHD VLYFSD+G VYS+ AYKI
Sbjct: 599 YVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKI 658
Query: 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR 712
PEC+R AAGTPLVQILSLSDGERITSIIPVSEFA DQ+LVMLT+NGYIKKVSLN F+SIR
Sbjct: 659 PECSRTAAGTPLVQILSLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIR 718
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK 772
TGIIAIQLVP DELKWV+CC+N+D VAMASQNGMVIL+ C IR+L RNTRGSVAMRLK
Sbjct: 719 CTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLK 778
Query: 773 DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL 832
+GDK+ASMDIIP AL K+L++T E + GPWLLFVSESG+GKRVP+S FR PL
Sbjct: 779 EGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPL 838
Query: 833 NRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYA 892
NRVGL GYKFS+ED LAAVFVVGFSL EDGESDEQVVLVSQSGTVNRIKVRDISIQ+RYA
Sbjct: 839 NRVGLFGYKFSSEDCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYA 898
Query: 893 RGVILMRLELSGKIQSASLISVTEPETD 920
RGVILMRLE +GKIQSASLIS + + +
Sbjct: 899 RGVILMRLEHAGKIQSASLISAADADPE 926
>sp|Q9CAF6|GYRA_ARATH Probable DNA gyrase subunit A, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=GYRA PE=1 SV=2
Length = 950
Score = 1366 bits (3535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/893 (76%), Positives = 786/893 (88%), Gaps = 9/893 (1%)
Query: 31 CRHARFLSSPRRFLSFPPSRPPPSSRTPILASK--DE---ERNGNGSVATVGPNVSPRIV 85
CR R S RF S SR P S + + A K DE E +G + V RIV
Sbjct: 46 CRLRRTEPSATRFFS---SRTPRSGKFVVGAGKRGDEQVKEESGANNGGLVVSGDESRIV 102
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P ELH+E T SY++Y++SVLLGRALPDVRDGLKPVHRRILFAMHELG+SS+KP+KKCARV
Sbjct: 103 PFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARV 162
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGKFHPHGD AVYDSLVRMAQ FSLR PLI+GHGNFGSIDADP AAMRYTECRL+
Sbjct: 163 VGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDP 222
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
L+EA+LL+D+DQDTV+FV NFD SQKEP++LPARLP LLLNGASGIAVGMATNIPPHNLG
Sbjct: 223 LAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLG 282
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
ELVDVLCALIHNPEATLQELLEYMP PDFPTGG+IMGNLG+LDAYRTGRGR+ VRGK EV
Sbjct: 283 ELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKAEV 342
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
ELLD K+KR VII EIPYQTNK+ LV+KIAELVENKTL+GISDIRDESDR+GMR+VIEL
Sbjct: 343 ELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIEL 402
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KRG DP++V+N+LYR TALQSSFSCNMVGI DG+PK MGLKE+LQAF+DFRCSVVERRAR
Sbjct: 403 KRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVVERRAR 462
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
FKLS ++R+HI+EGI+VGLDN+D VI ++ +A S+S+A+AAL+ E+ LSEKQA+AIL++
Sbjct: 463 FKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEI 522
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRLT LERKKF DES +L EQI KLE+LLS+R NIL+LIEQE IELK+RFS+PR SML
Sbjct: 523 TLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSML 582
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
ED+DSG L+DID+IPN+EML+A+SEKGYVKRMK +TFNLQ+RGTIGKSVGKLRV+DAMSD
Sbjct: 583 EDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEF 685
F+VC AHDHVL+FSDRGIVYS RAYKIPEC+RNAAGTPLVQILS+S+GER+TSI+PVSEF
Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEF 702
Query: 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQN 745
A D++L+MLT+NG IKKVSL LFS IR+TGIIAIQL GDELKWVRCC++DDLVAMASQN
Sbjct: 703 AEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQN 762
Query: 746 GMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGS 805
GMV LS+CD +R+LSRNT+G AMRLK+ DK+ASMDIIPA+L KD+E ED+ S VK S
Sbjct: 763 GMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDA-SLVKQS 821
Query: 806 SGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESD 865
+GPWLLFV E+G+GKRVPLSSFR+ LNRVGL GYKF+ +DRLAAVFVVG+SLAEDGESD
Sbjct: 822 TGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESD 881
Query: 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
EQVVLVSQSGTVNRIKVRDISIQ+R ARGVILMRL+ +GKIQSASLIS + E
Sbjct: 882 EQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISAADEE 934
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 41/274 (14%)
Query: 554 KNRFSTPRLSMLEDADSGQLDDIDIIP-----NDEMLLAISEKGYVKRMKPNTFN-LQNR 607
+N TP + +L ++ ++ I+P D LL ++ G +K++ F+ +++
Sbjct: 674 RNAAGTPLVQILSMSEGERV--TSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRST 731
Query: 608 GTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQI 667
G I +L D + C + D V S G+V + + +RN G V
Sbjct: 732 GIIAI---QLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKG---VTA 785
Query: 668 LSLSDGERITS--IIPVS------EFAGDQ---------FLVMLTMNGYIKKVSLNLF-- 708
+ L + ++I S IIP S E + D +L+ + NGY K+V L+ F
Sbjct: 786 MRLKNEDKIASMDIIPASLRKDMEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRR 845
Query: 709 SSIRTTGIIAIQLVPGDELKWVRCC--------TNDDLVAMASQNGMVILSSCDIIRSLS 760
S + G+ + D L V +D+ V + SQ+G V I S
Sbjct: 846 SRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQS 905
Query: 761 RNTRGSVAMRLKDGDKMASMDIIPAALHKDLERT 794
R RG + MRL K+ S +I AA ++ E T
Sbjct: 906 RRARGVILMRLDHAGKIQSASLISAADEEETEGT 939
>sp|Q7XZF7|GYRA_ORYSJ Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza
sativa subsp. japonica GN=GYRA PE=2 SV=2
Length = 939
Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/838 (73%), Positives = 729/838 (86%), Gaps = 11/838 (1%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V R+VPVELH+E T +Y+ Y+MSVLLGRALPDVRDGLKPVHRRIL+AMHE+GL+SR+PF
Sbjct: 78 VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+KCARVVGEVLGKFHPHGD+AVY++LVRMAQDFS+RYPL++GHGNFGSIDADP AAMRYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197
Query: 200 ECRLEALSEAMLLADIDQ----DTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGM 255
ECRL+ DID V+FVPNFD SQKEPSLLPAR+P+LLLNG+SGIAVGM
Sbjct: 198 ECRLDV--GCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGM 255
Query: 256 ATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRG 315
ATNIPPHNLGELVDVL +I NPEATLQELLE MPGPDFPTGG I+GN GIL+AY+TGRG
Sbjct: 256 ATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRG 315
Query: 316 RITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD 375
R+ +RGKT++E +D KSKR +IIKE+PYQTNKS LVE+IAELVE K L+GISDIRDESD
Sbjct: 316 RVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESD 375
Query: 376 RSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDF 435
RSGMR+VIELKRGADP+IV+N+LYR TALQSSFSCNMV ILDGQPK MGLKE+LQAF+DF
Sbjct: 376 RSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDF 435
Query: 436 RCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495
RCSV+ERRARFKLSQ ER+HIVEGI++GLDNLD VI+I+R +++ A +L EF LS
Sbjct: 436 RCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLS 495
Query: 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555
+KQA+A+LD+ LR+LT LERKKFVDE+K+L E+I KL ELLS++K I QLI QE +LKN
Sbjct: 496 DKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKN 555
Query: 556 RFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG 615
+F+TPR S +ED+ S ++DD+DIIPN+EMLL +SEKGYVKRMKPNTFNLQNRGTIGKSVG
Sbjct: 556 KFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVG 615
Query: 616 KLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER 675
K+R+ND SDFIVC+ HDHVLYFSD+GIVYSARAYKIPECTR A GTPLVQ+LSLSDGER
Sbjct: 616 KMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGER 675
Query: 676 ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735
ITSI+PV+EF DQ+LVMLT+NGYIKKV LN FS+IRT+GII+IQL PGDELKWVR C +
Sbjct: 676 ITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGD 735
Query: 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
DDLVA+ASQNGMVI+++C+ +R+L R TRG +AM+LK+GDKMASMDIIPA H P
Sbjct: 736 DDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHN----MP 791
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
E ++S V+ S PWLLF++++G GKRVPL++FR+ NRVGL GYK + LAAVFVVG
Sbjct: 792 E-TYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVG 850
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
FSL +DGESDEQVVLVSQSGTVNRIKV+DISI++R ARGVILMRLE +GKIQSASLIS
Sbjct: 851 FSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLIS 908
>sp|Q55738|GYRA_SYNY3 DNA gyrase subunit A OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=gyrA PE=3 SV=1
Length = 860
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/834 (50%), Positives = 580/834 (69%), Gaps = 25/834 (2%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R++ +L EM+ SY+ Y+MSV++GRALPD RDGLKPVHRRIL+AM+ELGL+ +PF+KC
Sbjct: 7 RLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKC 66
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGEVLGK+HPHGD AVYD+LVRMAQDFS+R PLI GHGNFGS+D DP AAMRYTE R
Sbjct: 67 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESR 126
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L LS LL DI+ +TV+F+ NFD SQ+EP++LPAR+P LL+NG+SGIAVGMATNIPPH
Sbjct: 127 LRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D ALI NPE T QEL++ +PGPDFPTG I+G GI +AY TGRG IT+RG
Sbjct: 187 NLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSITMRGV 246
Query: 323 TEVELLD--SKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+E ++ + R +I+ E+PYQTNK+ L+E+IA+LV +K +DGI+DIRDESDR GMR
Sbjct: 247 ASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMR 306
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIELKR A +V+N+LY+ T +QS+F N++ +++G P+ + +K+ L F +FR +
Sbjct: 307 IVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEFRIETI 366
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR R++L + +ER H+++G+++ LDNLD VIR++R A ++A L + F LSE QAD
Sbjct: 367 TRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFSLSEVQAD 426
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL M LRRLT LE K E L +I +++L+ R+ + +IE+E+ ++K +TP
Sbjct: 427 AILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATP 486
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R +++ D G+L D D+I ND+ L+ ++E+GY+KRM +TF QNR T GK+ K++ +
Sbjct: 487 RRTVIVQED-GELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDD 545
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + F+ C HD VL+FSDRG+VYS AY+IP +R A G P+VQ+L + E+ITS++
Sbjct: 546 DGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLV 605
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
VSEF D + +MLT GYIKK +L+ FS+IR G+IAI LV GD+L+WVR +D V
Sbjct: 606 SVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVI 665
Query: 741 MASQNGMVI--LSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ SQ GM I + D +R+L R TRG +MRL+ GD + SMDI+P+ + ++ ED
Sbjct: 666 IGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSEDE 725
Query: 799 HSNVKGSS-----------GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF-SAED 846
G GPWLL V+ G GKRVP+ FR +G+ +F S +D
Sbjct: 726 PDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDD 785
Query: 847 RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+L A+ VV +D+++++V+ G + R V DIS Q+R A GV + RL
Sbjct: 786 QLVALHVVN--------ADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRL 831
>sp|P94605|GYRA_CLOAB DNA gyrase subunit A OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrA
PE=3 SV=2
Length = 830
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/817 (44%), Positives = 541/817 (66%), Gaps = 32/817 (3%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
+++PV++ EM YI Y+MSV++ RALPDVRDGLKPVHRRIL++MHELGL+ K ++KC
Sbjct: 6 KVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKC 65
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+VLGK+HPHGD++VY +LVR+AQDF+LRY ++ GHGNFGS+D D AAAMRYTE +
Sbjct: 66 ARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTEAK 125
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ M+ DI ++TV+F+PNFD +KEP +LP+R P LL+NG++GIAVGMATNIPPH
Sbjct: 126 MNKIALEMV-RDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPH 184
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NLGE++D + LI NPEAT+ EL+ + GPDFPT G+IMG GI AY TGRG+ITVR K
Sbjct: 185 NLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRAK 244
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
+E+E+ D+ ++ +II EIPYQ NK+ LVE IA+LV++K + GISD+RDESDR GMRIV
Sbjct: 245 SEIEVEDNGKQK--IIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+K+ A+ +I++N LY+ T LQ +F NM+ ++D +P+ + LK++LQ ++ F+ V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F L + R HI+EG+ + LD++D VI ++R + + A L D+F LSEKQA AI
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQAQAI 422
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LD+ L+RLT LER+K DE LM+ I +L+ +L+ IL +I E+ E+K ++ R
Sbjct: 423 LDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKYGDERK 482
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ +E A++ +D D+I + +++ ++ GY+KR+ +T+ Q RG G + +D
Sbjct: 483 TAIERAEN-DIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGIQAMTTKEDDF 541
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+ + + H+++L+F+++G +Y +AY+IPE R A GT +V +L L E+I ++I +
Sbjct: 542 VENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVISI 601
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF + FLVM T G IKK + ++ +IR +G+IAI L DEL VR DD + +
Sbjct: 602 KEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIIIV 661
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
+ G+ I + +R L RN G + LK+ D + M++ + S+V
Sbjct: 662 TNKGLAIRFNEVDVRPLGRNALGVKGITLKEDDFVVGMEV-------------PNQESDV 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
L VSE+G GKR + ++ GLI YK S D+ +VG + EDG
Sbjct: 709 --------LVVSENGFGKRTHVGEYKCQHRGGKGLITYKVS--DKTGK--LVGVRMVEDG 756
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMR 899
++++L++ G RI V DIS +R A GV LMR
Sbjct: 757 ---DELMLINNLGIAIRINVSDISTTSRNAMGVTLMR 790
>sp|P05653|GYRA_BACSU DNA gyrase subunit A OS=Bacillus subtilis (strain 168) GN=gyrA PE=3
SV=1
Length = 821
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/835 (43%), Positives = 554/835 (66%), Gaps = 37/835 (4%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
+P++ + + +EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+AM++LG++S KP+K
Sbjct: 6 TPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYK 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VGEV+GK+HPHGD+AVY+S+VRMAQDF+ RY L+ GHGNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S +L DI +DT+++ N+D S++EP ++P+R P LL+NGA+GIAVGMATNIP
Sbjct: 126 ARMSKIS-MEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PH LGE++D + A+ NP+ T+ EL+E +PGPDFPT G I+G GI AY +GRG IT+R
Sbjct: 185 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
K E+E S +R +I+ E+PYQ NK+ L+EKIA+LV +K ++GI+D+RDESDR+GMR
Sbjct: 245 AKAEIEQTSSGKER--IIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE++R A+ ++++N+LY+ TALQ+SF N++ ++DGQPK + LK+ L+ +LD + V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR ++L + + R HI+EG+ V LD+LD VI ++R + + A L ++F L+EKQA
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AILDM L+RLT LER+K +E ++L++ I +L+++L++ +L++I +E+ E+K RF+
Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482
Query: 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 620
R + + + ++D D+I + +++ ++ GYVKR+ +T+ Q RG GK V + N
Sbjct: 483 RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRG--GKGVQGMGTN 540
Query: 621 --DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
D + I HD +L+FS++G VY A+ Y+IPE R A G P++ +L + GE I +
Sbjct: 541 EDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 600
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDL 738
IIPV+EF + +L T +G K+ SL+ F++IR G+IA+ L DEL VR
Sbjct: 601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQ 660
Query: 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDS 798
+ + ++NG++I +R + R G + L D D + M+I+ E+S
Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEIL-----------EEES 709
Query: 799 HSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFS 857
H +L V+E G+GKR P +R GL K + + +L AV
Sbjct: 710 H----------VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAV------ 753
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
A GE D +++++ SG + R+ + DISI R +GV L+R+ + + +L+
Sbjct: 754 KATKGEED--LMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806
>sp|O50628|GYRA_BACHD DNA gyrase subunit A OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrA PE=3
SV=1
Length = 833
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/821 (43%), Positives = 537/821 (65%), Gaps = 39/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
R+ + + +EM S++ Y+MSV++ RALPDVRDG+KPVHRRIL+AM+ELG++S K +KK
Sbjct: 8 RVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKAYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VGEV+GK+HPHGD+AVY+++VRMAQDFS RY L+ GHGNFGSID D AAAMRYTE R
Sbjct: 68 ARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ +S L+ DI++DT+++ N+D S+KEP ++P+R P LL+NGASGIAVGMATNIPPH
Sbjct: 128 MSKIS-MELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
LGE++D + AL NP+ ++ EL+E++PGPDFPTG I+G GI AY+TGRG IT+R K
Sbjct: 187 QLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAK 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIV 382
TE+E K + +I+ EIPYQ NK+ L+EKIAELV +K +DGI+D+RDESDR+GMRIV
Sbjct: 247 TEIEEHHGKQR---IIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
IE+++ A+ ++++N+LY+ TALQ+SF N++ +++GQPK + LKE L+ +L + V+ R
Sbjct: 304 IEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVIRR 363
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R F+L + + R HI+EG+ + LD+LD VI ++R + + A L + F+LS +QA AI
Sbjct: 364 RTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQAQAI 423
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
LDM L+RLT LER K E K L+E+I +L+ +L+ + +L +I +E++ELK +++ R
Sbjct: 424 LDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYNDERK 483
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-- 620
+ + A +D D+IP +++ ++ GY+KR+ +T+ Q RG G+ + + N
Sbjct: 484 TAI-SASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRG--GRGIQGMGTNED 540
Query: 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSII 680
D + +H +L+F+++G VY + Y+IPE R A G P++ +L + E I++II
Sbjct: 541 DFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDEYISTII 600
Query: 681 PVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
P+ EF D +L +T +G K+ L+ F++IR G+ AI L GDEL VR D V
Sbjct: 601 PIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTNGDKEVI 660
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ ++ GM I +R + R G + L D + MDI+ ED
Sbjct: 661 VGTRQGMAIRFHETDVRLMGRTATGVKGISLTGDDHVVGMDIV------------ED--- 705
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLA 859
G +L V+E G GKR P++ +R G+ + ++ L ++ VV
Sbjct: 706 ------GQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVSLKVVSV--- 756
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
D +++++ SG + R+ V+DIS+ R +GV L+R+
Sbjct: 757 -----DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRV 792
>sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrA PE=3 SV=1
Length = 893
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/841 (41%), Positives = 544/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrA PE=3 SV=1
Length = 893
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/841 (41%), Positives = 543/841 (64%), Gaps = 36/841 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ KP+KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL+NGA+GIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL E++D + +L NP+ T+ EL+E + GPDFPT GL++G GI AY TGRG I +R +
Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
E+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AEIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++ +PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR + L + ++R HI+EG+ + LD++D +I +RE+ ++ A A+L++ FKL+E+QA A
Sbjct: 365 RRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+E I +LEE+L+ + +LQL+ E+ E+K RF R
Sbjct: 425 ILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDER 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P++ + L + E I+++I
Sbjct: 545 FVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIA 604
Query: 682 VSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + ++ +LV T G +K+ SL+ FS I G IAI DEL VR T ++ +
Sbjct: 605 VKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I S +R L R G + L++GD + +D+ DS S
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVA-------------DSES 711
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
+L V+E+G+GKR P+S +R L+ G G K + +R + +
Sbjct: 712 E------DEVLVVTENGYGKRTPVSEYR---LSNRGGKGIKTATITERNGNIVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPET 919
E E +++V+ +G + R+ V DIS R A+GV LM+L G Q S ++ E
Sbjct: 763 E-----EDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKL---GDGQFVSTVAKVNEED 814
Query: 920 D 920
D
Sbjct: 815 D 815
>sp|P0AES5|GYRA_SHIFL DNA gyrase subunit A OS=Shigella flexneri GN=gyrA PE=1 SV=1
Length = 875
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/855 (42%), Positives = 546/855 (63%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD++++TV+FV N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE +D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK+++ AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA----------- 487
VV RR F+L + ++R HI+E + V L N+D +I ++R AP+ + A A
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420
Query: 488 ----------------LKDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
L+ EF L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S ++++I +E+ ++ +F R + + A+S ++ D+I +++
Sbjct: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HDH+L FS RG V
Sbjct: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
YS + Y++PE TR A G P+V +L L ERIT+I+PV+EF + M T NG +KK
Sbjct: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L F+ +RT G +AI+LV GDEL V + +D V + S G V+ +R++ NT
Sbjct: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GDK+ S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDKVVSL-IVP------------------RGDGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K + + L VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 AEYPTKSRATKGVISIKVTERNGL----VVGAVQVDDC---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
ISI R +GVIL+R
Sbjct: 812 ISIVGRNTQGVILIR 826
>sp|P0AES4|GYRA_ECOLI DNA gyrase subunit A OS=Escherichia coli (strain K12) GN=gyrA PE=1
SV=1
Length = 875
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/855 (42%), Positives = 546/855 (63%), Gaps = 65/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD++++TV+FV N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I + + +++ L+E++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE +D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVE-VDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK+++ AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAA----------- 487
VV RR F+L + ++R HI+E + V L N+D +I ++R AP+ + A A
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420
Query: 488 ----------------LKDEFK-------LSEKQADAILDMNLRRLTMLERKKFVDESKT 524
L+ EF L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++QI +L +L S ++++I +E+ ++ +F R + + A+S ++ D+I +++
Sbjct: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT-ANSADINLEDLITQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HDH+L FS RG V
Sbjct: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
YS + Y++PE TR A G P+V +L L ERIT+I+PV+EF + M T NG +KK
Sbjct: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L F+ +RT G +AI+LV GDEL V + +D V + S G V+ +R++ NT
Sbjct: 660 LTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G +RL +GDK+ S+ I+P +G +L +++G+GKR +
Sbjct: 720 GVRGIRLGEGDKVVSL-IVP------------------RGDGA--ILTATQNGYGKRTAV 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ + G+I K + + L VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 AEYPTKSRATKGVISIKVTERNGL----VVGAVQVDDC---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMR 899
ISI R +GVIL+R
Sbjct: 812 ISIVGRNTQGVILIR 826
>sp|Q5HJZ0|GYRA_STAAC DNA gyrase subunit A OS=Staphylococcus aureus (strain COL) GN=gyrA
PE=3 SV=1
Length = 887
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q8NKW8|GYRA_STAAW DNA gyrase subunit A OS=Staphylococcus aureus (strain MW2) GN=gyrA
PE=3 SV=1
Length = 887
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q6GD84|GYRA_STAAS DNA gyrase subunit A OS=Staphylococcus aureus (strain MSSA476)
GN=gyrA PE=3 SV=1
Length = 887
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q2G2Q0|GYRA_STAA8 DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325)
GN=gyrA PE=1 SV=1
Length = 887
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q99XG5|GYRA_STAAN DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) GN=gyrA
PE=1 SV=1
Length = 889
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|P20831|GYRA_STAAU DNA gyrase subunit A OS=Staphylococcus aureus GN=gyrA PE=1 SV=3
Length = 889
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 533/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD+++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|P48370|GYRA_HELPY DNA gyrase subunit A OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=gyrA PE=3 SV=2
Length = 827
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 534/821 (65%), Gaps = 32/821 (3%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGDNAVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L E+LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ + S A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + +++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDD 737
+ +F+ ++ L T NG +K+ +L+ F S R+ GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAK 661
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ +AS G+ I + +R + R TRG + ++L + D + +I
Sbjct: 662 HLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVIS------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
G LL VSE+G GK+ ++R G+IG K + + +VG
Sbjct: 709 -------DDGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQK----TGNLVGVI 757
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+D D +++++ S + R+ ++DI R A GV L+
Sbjct: 758 SVDDENLD--LMILTASAKMIRVSIKDIRETGRNASGVKLI 796
>sp|Q2FKQ0|GYRA_STAA3 DNA gyrase subunit A OS=Staphylococcus aureus (strain USA300)
GN=gyrA PE=3 SV=1
Length = 887
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|P37411|GYRA_SALTY DNA gyrase subunit A OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=gyrA PE=3 SV=3
Length = 878
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/887 (41%), Positives = 547/887 (61%), Gaps = 67/887 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE RL ++ L+AD++++TV+FV N+D ++K P ++P ++P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRLAKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I N + +++ L+E++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVE-ADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LK+++ AF+ R
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+E + + L N+D +I ++R AP+ + A AAL
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
++ L+E+QA AILD+ L++LT LE +K +DE K
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+EQI +L +L S ++++I +E+ ++++F R + + A+S ++ D+I +++
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEIT-ANSADINIEDLISQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS R+ GIIA+ L GDEL V + D V + S G V+ D +R++ R
Sbjct: 660 LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTAT 719
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G ++L DK+ S+ IIP +G +L V+++G+GKR
Sbjct: 720 GVRGIKLAGDDKVVSL-IIP------------------RGEGA--ILTVTQNGYGKRTAA 758
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
+ G+I K + + VVG +D +Q+++++ +GT+ R +V +
Sbjct: 759 DEYPTKSRATQGVISIKVTERNG----SVVGAVQVDDC---DQIMMITDAGTLVRTRVSE 811
Query: 885 ISIQARYARGVILMRLELSGKIQSASLISVTEPETDLFLPSTSDKLA 931
IS+ R +GVIL+R + L V EP D L + +A
Sbjct: 812 ISVVGRNTQGVILIRTAEDENV--VGLQRVAEPVDDEELDAIDGSVA 856
>sp|Q6GKT9|GYRA_STAAR DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252)
GN=gyrA PE=3 SV=1
Length = 886
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q932M0|GYRA_STAAM DNA gyrase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrA PE=1 SV=1
Length = 889
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/821 (41%), Positives = 532/821 (64%), Gaps = 33/821 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI + EM S++ Y+MSV++ RALPDVRDGLKPVHRRIL+ ++E G++ K +KK
Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR+VG+V+GK+HPHGD ++Y+++VRMAQDFS RYPL+ G GNFGS+D D AAAMRYTE R
Sbjct: 68 ARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 127
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
+ ++ LL DI++DT++F+ N+D +++EPS+LPAR P LL NGASGIAVGMATNIPPH
Sbjct: 128 MTKIT-LELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186
Query: 263 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322
NL EL++ + +L NP+ ++ EL+E + GPDFPT GLI+G GI AY TGRG I +R +
Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 246
Query: 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESD-RSGMRI 381
+E + R +++ EIP+Q NK+ ++EKIAELV +K +DGI+D+RDE+ R+G+R+
Sbjct: 247 AVIE--ERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304
Query: 382 VIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVE 441
VI++++ A+ S+++N+LY+ T LQ+SF NM+ +++G+PK + LKE L +L+ + +VV
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVR 364
Query: 442 RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501
RR ++ L + K+R HI+EG+ + LD++D +I +RE+ ++ A +L+ FKLSEKQA A
Sbjct: 365 RRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEKQAQA 424
Query: 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPR 561
ILDM LRRLT LER K E L+ I +LE +L+ + +LQL+ E+ E+++RF R
Sbjct: 425 ILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 484
Query: 562 LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND 621
+ ++ L+D D+IP +++++ +S Y+KR+ +T+ QNRG G D
Sbjct: 485 RTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEED 544
Query: 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIP 681
+S + HDHVL+F+++G VY + Y++PE +R + G P+V + L + E I+++I
Sbjct: 545 FVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA 604
Query: 682 VSEF-AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740
V + + D FLV T G +K+ +L+ FS I G IAI DEL VR + + +
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDIL 664
Query: 741 MASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800
+ + + +I +R L R G + L++GD++ +D+ +H+
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDV---------------AHA 709
Query: 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLA 859
N S +L V+E+G+GKR P++ +R L+ G G K + +R V +
Sbjct: 710 N----SVDEVLVVTENGYGKRTPVNDYR---LSNRGGKGIKTATITERNGNVVCITTVTG 762
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
E E +++V+ +G + R+ V DIS R A+GV L+RL
Sbjct: 763 E-----EDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL 798
>sp|Q9ZLD9|GYRA_HELPJ DNA gyrase subunit A OS=Helicobacter pylori (strain J99) GN=gyrA
PE=3 SV=1
Length = 828
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/823 (43%), Positives = 540/823 (65%), Gaps = 35/823 (4%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N + IV V + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AMHELGL+S+
Sbjct: 7 NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK AR+VG+V+GK+HPHGD AVYD+LVRMAQDFS+R L+ G GNFGSID D AAAMRY
Sbjct: 67 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ SE +L DID+DT++FVPN+D++ KEP +LP+RLP LL+NGA+GIAVGMAT+
Sbjct: 127 TEARMTKASEE-ILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 185
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPH + E++D L ++ NP A L ++LE++ GPDFPTGG+I G GI++AY+TGRGR+
Sbjct: 186 IPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVK 245
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K VE +K+K + +++ E+P+QTNK+ LVE+I++L K ++GIS++RDESDR G
Sbjct: 246 VRAKVHVE--KTKNKEI-IVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+R+VIELKR A IV+N LY+LT ++++FS ++ I + +PK L E+L+ FL+ R +
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQ 498
++ RR F+L + K R HI+EG ++ LDN+D ++R+++ +PS A AL + F LSE Q
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQ 422
Query: 499 ADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558
+ AIL+M L+RLT LER K +E + L+E I L +L S + ++++ E++E+K +FS
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482
Query: 559 TPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR 618
+PR + ++++ +D D+I N+ M++++S KGYVKR+ + QNRG GK G
Sbjct: 483 SPRRTEIQESYE-SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541
Query: 619 VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITS 678
+D + +F V HD +L+ +++G +Y + YKIPE +R A G +V ++SL+ E+I +
Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601
Query: 679 IIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT-TGIIAIQLVPGDELKWVRCC-TND 736
+ +F+ ++ L T NG +K+ +L+ F R+ +GI AI L GDEL + N
Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661
Query: 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPE 796
+ +AS GM I + +R + R TRG + +RL + D + +I +
Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVI-----------SD 710
Query: 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVG 855
DS+ LL VSE+G GK+ ++R+ G+IG K + + L +V V
Sbjct: 711 DSNK---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISV- 760
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898
+ + +++++ S + R+ ++DI R A GV L+
Sbjct: 761 ------DDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLI 797
>sp|D8K235|GYRA_DEHLB DNA gyrase subunit A OS=Dehalogenimonas lykanthroporepellens
(strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) GN=gyrA
PE=3 SV=1
Length = 814
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/825 (41%), Positives = 527/825 (63%), Gaps = 44/825 (5%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P+ + +EM SY+ Y+MSV++ RALPDVRDGLKPVHRRIL+AM +LG+ +KK AR+
Sbjct: 8 PINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKSARI 67
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VGEVLGK+HPHGD++VYD++VRMAQ+FSLRY L+ G GNFGS+D DP AAMRYTE RL
Sbjct: 68 VGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEARLTR 127
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
L+ LL DID+DTV F+PNFD+S KEP++LP+RLP LL+NGASGIAVGMATNIPPHNL
Sbjct: 128 LA-GELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHNLT 186
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
EL D + LI NPE L++L++++ GPDFPTGGLI+G GI AY TG G++ VR + V
Sbjct: 187 ELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARAHV 246
Query: 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIEL 385
+ R +II E+PYQ NK+ LV++IA L + ++GI+++RDESDR G+R+VIEL
Sbjct: 247 ADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVIEL 306
Query: 386 KRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRAR 445
KR +P ++N+LY+ T LQ+SF NM+ +++ +P + LKE L ++ FR ++ RR++
Sbjct: 307 KRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRRSK 366
Query: 446 FKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDM 505
F+L + R HI+EG+ + LDNLD +I ++R A + TA L F+LS+ QA AILD+
Sbjct: 367 FELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQLQAQAILDL 426
Query: 506 NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565
LRRL LER+K + E +++QI LE+LL++ + +L L++ ++ E+K R+ R + +
Sbjct: 427 QLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARYGDARRTEI 486
Query: 566 EDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSD 625
+ + + D+IP+ M++ ++E+G++KR+ + LQ+R GKS+ K R D++
Sbjct: 487 QSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKTREADSVRF 546
Query: 626 FIVCRAHDHVLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+V HD VL F++RG ++S + ++IP + R A G ++ ++ L++ ERITS+I VS
Sbjct: 547 IMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSMIAVSR 606
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F + L+M T G K+ L+ F+++R++G++A+ L DEL D+ + + +
Sbjct: 607 FDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGADENIILITH 666
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
NG I +R R + G + L+ D++A +D+
Sbjct: 667 NGRSIHFPVADLRVSQRASGGVRGITLEGDDRVAGLDV---------------------A 705
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNR---VGLIGYK-FSAEDRLAAVFVVGFSLAE 860
G ++L V+ G+GK L++ + PL R G++ +K ++AA VV
Sbjct: 706 RPGHFVLVVTTGGYGK---LTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGKVV------ 756
Query: 861 DGESDEQVVLVSQSGTVNRIKV------RDISIQARYARGVILMR 899
+ + QV++ + G V R V + I + R +GVI++R
Sbjct: 757 --DREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIR 799
>sp|P57277|GYRA_BUCAI DNA gyrase subunit A OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrA PE=3 SV=1
Length = 830
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/854 (41%), Positives = 544/854 (63%), Gaps = 52/854 (6%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S I+ V + EE+ SY+ YSMSV++GRALPDVRDGLKPVHRRILFAM+ L K +K
Sbjct: 5 SREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYK 64
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+AVYD++VRMAQ FSLRY LI G GNFGS+D D AAAMRYTE
Sbjct: 65 KSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTE 124
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ LL D++++TV F+PN+D ++ P +LPA++P LL+NG+SGIAVGMATNIP
Sbjct: 125 VRMSKIAHE-LLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIP 183
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNL E+++ A I N + TL+EL++++PGPDFPT +I G GI +AYRTG+G+I +R
Sbjct: 184 PHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIR 243
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
+ ++E K+K+ ++ EIPYQ NKS L+EKIAELV+ K +DGI+ +RDESD+ GMR
Sbjct: 244 AQNQIEKN-KKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+KR A +++N LY LT LQ SF NMV + GQPK + LKE+L+ FL R ++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGL--------------DNLD-RVIRIVREAPSNSTAS 485
RR+ F+L++V+ R HI+EG+ + L +++D + I I + S
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422
Query: 486 AALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQL 545
A K E+ SEKQA AILD+ L ++T LE++K + E L+++ +L+E+L + K + ++
Sbjct: 423 LAKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEV 482
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
I+ E++ ++N FS R + + + S ++ D+I +++++ +S GYVK + +N Q
Sbjct: 483 IKSELLSIQNNFSDKRRTKITENHS-DINMEDLINQEDVVVTLSHSGYVKYQPLSDYNAQ 541
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
RG GKS K++ D + ++ HD +L FS RGI+Y + Y++PE +R+A G P+V
Sbjct: 542 RRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARGRPIV 601
Query: 666 QILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGD 725
+L LS ERIT+I+PV ++ + + M T +G +KK SL+ F R GIIAI L D
Sbjct: 602 NLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHAND 661
Query: 726 ELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785
EL V ++ + + +QNG V+ + +R++ R G +++K DK+ S+ I+P
Sbjct: 662 ELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSL-IVPK 720
Query: 786 ALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE 845
KGS +L +++G+GKR +S F G+I K + +
Sbjct: 721 N----------------KGS----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKK 760
Query: 846 DR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
+ + A+ V+ +Q+++++ +GT+ RI+V ++ + R +GVIL+R +
Sbjct: 761 NGKIIGAIQVI---------EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811
Query: 904 GKIQSASLISVTEP 917
K+ +L + +P
Sbjct: 812 EKV--VALQKIVDP 823
>sp|P41513|GYRA_ERWCA DNA gyrase subunit A OS=Erwinia carotovora GN=gyrA PE=3 SV=1
Length = 878
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/855 (41%), Positives = 536/855 (62%), Gaps = 66/855 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM LG KP
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVY+++VRMAQ FSLRY L+ G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ LLAD++++TV+FVPN+D +++ P ++P R+P LL+NG+SGIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ A I + +L+ L+E++ GPDFPT +I G GI +AYRTGRG+I
Sbjct: 182 IPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV++K ++GIS +RDESD+ G
Sbjct: 242 IRARAEVE-ADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ+SF NMV + GQPK M LK++L AF+ R
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ + L N+D +I ++R A S + A A+L
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSV 420
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ L+E+QA AILD+ L++LT +E +K +DE K
Sbjct: 421 ATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKE 480
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L+ +I +L +L+S + ++++I +E+ K ++S R + + A++ ++ D+I +++
Sbjct: 481 LLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEI-TANTADINIEDLINQEDV 539
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + + Q RG GKS +++ D + +V HD +L FS RG +
Sbjct: 540 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P+V +L L ERIT+I+PV E+ + + M T +G +KK +
Sbjct: 600 YWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKKTA 659
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764
L FS +GIIA+ L GDEL V D + S G V+ S +RS+ R
Sbjct: 660 LTEFSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTAT 718
Query: 765 GSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824
G + L+ D++ S+ IIP +G +L V+++G GKR +
Sbjct: 719 GVRGINLQGEDRVVSL-IIP------------------RGEGD--ILTVTQNGFGKRTAV 757
Query: 825 SSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884
S + G+I K S + VVG A ++ +Q+++++ +GT+ R +V +
Sbjct: 758 SEYPTKSRATKGVISIKVSERNGK----VVG---AVQVDAADQIMMITDAGTLVRTRVSE 810
Query: 885 ISIQARYARGVILMR 899
+SI R +GV L+R
Sbjct: 811 VSIVGRNTQGVTLIR 825
>sp|Q8DPM2|GYRA_STRR6 DNA gyrase subunit A OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrA PE=3 SV=1
Length = 822
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/837 (40%), Positives = 531/837 (63%), Gaps = 34/837 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+V V L +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP KK A
Sbjct: 6 LVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+ G+V+GK+HPHGD+++Y+++VRMAQ +S RY L+ GHGNFGS+D D AAA RYTE R+
Sbjct: 66 RITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML DI+++TV+FV N+D +++EP +LPAR P LL+NGA+GIAVGMATNIPPHN
Sbjct: 126 SKIALEML-RDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D + ++ NPE T ++L+E +PGPDFPTG L+MG GI AY TG+G I +R +T
Sbjct: 185 LGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRT 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E +K+ R +++ E PY NK+ + E I LV+ K ++GI+ +RDES+R G+R VI
Sbjct: 245 EIET--TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A ++++N+L+++T +Q++F NM+ I +G PK + L+++L A+++ + VV RR
Sbjct: 303 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF + + R HI+EG+++ LD++D VIRI+R + +++ A A L +FKLSE+Q+ AIL
Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER K E L+ I L ++L+ + + Q+I+ E+ E+K +FS R +
Sbjct: 423 DMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
L L+D D+I ++L+ +S +GY+KR+ + F Q RG G ++ +D +
Sbjct: 483 ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
+ + HDH+L+F+++G VY + Y+IPE R A G P+V +L L + E I ++I V
Sbjct: 543 RELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVE 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
S+ + D +L T +G +K+ S+ F++IR G+ A+ L DEL V D + +
Sbjct: 603 SDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + +R +SR G + L++GD + +I T +D
Sbjct: 663 TKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLI----------TDQDE---- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDR-LAAVFVVGFSLAED 861
+L ++E G+GKR + + G+ K + ++ LA + V
Sbjct: 709 -------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTV------- 754
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ DE +++++ +G + R + +IS R GV +MRL+ +I + + ++V E E
Sbjct: 755 -QGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKE 810
>sp|P72524|GYRA_STRPN DNA gyrase subunit A OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrA PE=3 SV=3
Length = 822
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/836 (40%), Positives = 530/836 (63%), Gaps = 32/836 (3%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+V V L +EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP KK A
Sbjct: 6 LVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+ G+V+GK+HPHGD+++Y+++VRMAQ +S RY L+ GHGNFGS+D D AAA RYTE R+
Sbjct: 66 RITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ ML DI+++TV+FV N+D +++EP +LPAR P LL+NGA+GIAVGMATNIPPHN
Sbjct: 126 SKIALEML-RDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE +D + ++ NPE T ++L+E +PGPDFPTG L+MG GI AY TG+G I +R +T
Sbjct: 185 LGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRT 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E +K+ R +++ E PY NK+ + E I LV+ K ++GI+ +RDES+R G+R VI
Sbjct: 245 EIET--TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E+KR A ++++N+L+++T +Q++F NM+ I +G PK + L+++L A+++ + VV RR
Sbjct: 303 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF + + R HI+EG+++ LD++D VIRI+R + +++ A A L +FKLSE+Q+ AIL
Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER K E L+ I L ++L+ + + Q+I+ E+ E+K +FS R +
Sbjct: 423 DMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
L L+D D+I ++L+ +S +GY+KR+ + F Q RG G ++ +D +
Sbjct: 483 ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
+ + HDH+L+F+++G VY + Y+IPE R A G P+V +L L + E I ++I V
Sbjct: 543 RELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVE 602
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
S+ + D +L T +G +K+ S+ F++IR G+ A+ L DEL V D + +
Sbjct: 603 SDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIG 662
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + + +R +SR G + L++GD + +I T +D
Sbjct: 663 TKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLI----------TDQDE---- 708
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+L ++E G+GKR + + G+ K + ++ L A +
Sbjct: 709 -------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMT-------V 754
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPE 918
+ DE +++++ +G + R + +IS R GV +MRL+ +I + + ++V E E
Sbjct: 755 QGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKE 810
>sp|B3PN30|GYRA_MYCA5 DNA gyrase subunit A OS=Mycoplasma arthritidis (strain 158L3-1)
GN=gyrA PE=3 SV=1
Length = 898
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/818 (41%), Positives = 518/818 (63%), Gaps = 35/818 (4%)
Query: 86 PVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 145
P +L + M S+I Y+MSV++ RALPD RDGLKPVHRRIL+ M ELG+ P KK AR+
Sbjct: 73 PADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTAPHKKSARI 132
Query: 146 VGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEA 205
VG+VLGK+HPHGD++VY+++VRMAQDFSLRYPLI GHGNFGSID D AAAMRYTE R+
Sbjct: 133 VGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMRYTEARMSK 192
Query: 206 LSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265
++ +++ I ++TV+F+ N+D ++KEP++LP+R P LL++G SGIAVGMATNIPPHNLG
Sbjct: 193 IA-GVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATNIPPHNLG 251
Query: 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325
E++D +CAL NPE T+ L+E++ PDFPTG I G+++AY+TGRG IT+R K +
Sbjct: 252 EIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSITMRAKANI 311
Query: 326 -ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
EL + KSK +II EIPY+ K+ ++EKIA+ ++NK ++GISD RDES+R G+R+VI+
Sbjct: 312 QELANGKSK---IIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIRVVID 368
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
+K+ A P +++N+LY+LT LQ++FS NM+ +++G+PK + LKE LQ +LD + V RR
Sbjct: 369 VKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVTRRRL 428
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILD 504
+F L + R HI+EG+ + ++N+DRVI I++++ ++ A A L F LSE QA AI+D
Sbjct: 429 QFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQAKAIVD 488
Query: 505 MNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSM 564
M L RLT L +K DE + +I + +LSS + +++LI +E+ E+K + R S
Sbjct: 489 MRLGRLTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAYGDKRRSE 548
Query: 565 LEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624
+ +++ D+IP E+++ +S Y+KR+ + Q RG +G S K +D +
Sbjct: 549 IRWDVMSSINNEDLIPQKEIVITLSSNNYIKRIDLEEYREQRRGGVGVSTVKTYQDDDIQ 608
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSIIPVS 683
D +V H +L F+D +Y R ++IP T+ + GTP+V I+ ++ E++ II V+
Sbjct: 609 DVVVANTHADLLIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTIQKNEKVVKIICVT 668
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
++ Q L+ +T G IKK +L + IR G A+ L+ D L VR D+ + +A+
Sbjct: 669 DYEESQSLITVTERGVIKKTNLKEYELIRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAA 728
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
N + + +R + R RG +RL D DK+ S+
Sbjct: 729 SNSRINRFNVADVREMGRVARGVGGIRLSDDDKVVSVS---------------------S 767
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863
G ++ + G+GK + S+RK N G+I ED+ + ++ A G
Sbjct: 768 SKDGAYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLN---EDKAGKLV---YAAAVHGV 821
Query: 864 SDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D +++++QSG RI +RDI++ R A+GV ++ L+
Sbjct: 822 ED--LIIMTQSGIAIRISLRDINVIGRNAKGVKIINLK 857
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 36/229 (15%)
Query: 689 QFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWVRCC-TNDDLVAMASQN 745
+ ++ L+ N YIK++ L + R G+ ++ D+++ V T+ DL+ +
Sbjct: 567 EIVITLSSNNYIKRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEA 626
Query: 746 GMVILSSCDIIRSLSRNTRGS----VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ + +I S ++ ++G+ + ++ +K+ + + E+S S
Sbjct: 627 KIYRVRGHEI-PSGTKQSKGTPIVNIVPTIQKNEKVVKIICVT---------DYEESQS- 675
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
L+ V+E G K+ L + + N G +D L V VV
Sbjct: 676 --------LITVTERGVIKKTNLKEYELIRKN--GKYALSLLEDDHLIDVRVV------- 718
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSAS 910
+ DE++ + + + +NR V D+ R ARGV +RL K+ S S
Sbjct: 719 -DQDEEIFIAASNSRINRFNVADVREMGRVARGVGGIRLSDDDKVVSVS 766
>sp|Q1MQ89|GYRA_LAWIP DNA gyrase subunit A OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=gyrA PE=3 SV=1
Length = 820
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/817 (41%), Positives = 516/817 (63%), Gaps = 32/817 (3%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
+ + +EM SY+ YS+SV++GRA+PDVRDGLKPVHRRILFA ELG S +P KKCAR+V
Sbjct: 8 ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G+V+GK+HPHGD+AVYD+LVRMAQDFS+R PL G GNFGSID D AAMRYTE R+ L
Sbjct: 68 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
+ + L+DID++TV+F PN+D S +EP +LP ++P LLLNG+SGIAVGMATNIPPHNLGE
Sbjct: 128 A-SEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 186
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L + L +I +P+ + LL + GPDFPTGG I G+ DAY GRG + VRGK E+E
Sbjct: 187 LCNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIE 246
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
+ K ++I+EIP+ NKS LVEKIA LV + +DGI+D+RDESDR G+R+VIELK
Sbjct: 247 --ERKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELK 304
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
+G P I++N+LY+ T L++SF NM+ ++D +P+ + +K L FLD R V+ RR RF
Sbjct: 305 KGVIPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRF 364
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L++ + R HI+ G++ LD++D V+ ++R + + + A L + F LSE QA +ILDM
Sbjct: 365 ELNKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIERFSLSEIQAQSILDMR 424
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L+RLT LER+K +E L +I E +L K + +I EV +K ++TPR + +
Sbjct: 425 LQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILWGVIRDEVTGIKEMYTTPRRTEVI 484
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV--NDAMS 624
++ D+IP+D++++ +S +GY+KR + Q RG GK V L +D +
Sbjct: 485 RETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRG--GKGVAGLHTSEDDFVQ 542
Query: 625 DFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSE 684
+FI H +L F+++G ++ + +++PE +R A GT + I+ L E +T+I+ V E
Sbjct: 543 EFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIANIVPLEKEEWVTTILTVRE 602
Query: 685 FAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQ 744
F+ ++F + T G +K+ S + ++ R TG++A+ L DEL V+ TN+D + +A+
Sbjct: 603 FSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELIMVKEVTNNDFIVLATA 662
Query: 745 NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKG 804
G I SC+ +R++ R G + L+ GD + + I+ + +D+
Sbjct: 663 EGFAIRFSCEDVRNMGRGAAGVKGIALRPGDSVVACLIL---------QEKQDT------ 707
Query: 805 SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGES 864
P ++ VS G+GKR + +R G+I +K + + L V+G D
Sbjct: 708 ---PAIMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQKTGL----VIGAKPVSD--- 757
Query: 865 DEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE 901
D +VL++ + + R+ V ++ R GV L++L+
Sbjct: 758 DNALVLLTSTNKIIRMSVDEVRSAGRATMGVRLVKLD 794
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Query: 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640
+++ L + KG VKR ++ ++R T +VG LR +D + +D ++ +
Sbjct: 605 DNKFFLFATRKGMVKRSSA-SYYARSRRTGLLAVG-LREDDELIMVKEVTNNDFIVLATA 662
Query: 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYI 700
G + R AAG V+ ++L G+ + + + + E ++ ++ GY
Sbjct: 663 EGFAIRFSCEDVRNMGRGAAG---VKGIALRPGDSVVACLILQEKQDTPAIMTVSNLGYG 719
Query: 701 KKVSLNLFSSIRT---TGIIAIQLVPGDELK-WVRCCTNDDLVAMASQNGMVILSSCDII 756
K+ S++L+ ++T GII ++ L + ++D+ + + + +I S D +
Sbjct: 720 KRTSIDLYR-VQTRGGKGIINFKVTQKTGLVIGAKPVSDDNALVLLTSTNKIIRMSVDEV 778
Query: 757 RSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787
RS R T G ++L DG + D + +
Sbjct: 779 RSAGRATMGVRLVKLDDGAYVVGFDTVDGTV 809
>sp|Q8K9W2|GYRA_BUCAP DNA gyrase subunit A OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=gyrA PE=3 SV=1
Length = 825
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/857 (41%), Positives = 543/857 (63%), Gaps = 53/857 (6%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ IV V++ +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAMH L K
Sbjct: 3 HLAREIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYDS+VRMAQ+FSLRY LI G GNFGSID D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S+ LLAD++++TV F+PN+D ++ P +LP+++P LL+NG+SGIAVGMATN
Sbjct: 123 TEVRMSKISQE-LLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E++D A I + TL+EL++++PGPDFPT G+I G GI +AYRTG+G+I
Sbjct: 182 IPPHNLNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+R + ++E K+K+ +I EIPYQ NKS L+EKIAELV+ K +DGI+ +RDESD+ G
Sbjct: 242 IRARNKIEKN-KKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIV+E+K+ A I++N LY LT LQ SF NMV + GQPK + LKE+L+ FL R
Sbjct: 301 MRIVVEIKKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
+V RR+ F+L + +R HI+EG+ + L N++ +I ++++A S+ A +
Sbjct: 361 IVTRRSIFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNS 420
Query: 489 -----KD-EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNI 542
KD ++ +E+Q AILD+ L +LT LE+ K V E L ++I +L+++L SR +
Sbjct: 421 EKINQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSRDRM 480
Query: 543 LQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTF 602
++I E++ +KN F R + + + ++ + D+I +++++ +S GYVK + +
Sbjct: 481 REVIRDELVSIKNNFGDQRRTEITE-NNPDISIEDLINQEDVVVTLSHSGYVKYQPLSDY 539
Query: 603 NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGT 662
N Q RG GKS K++ D + +V HD +L FS RGI+Y + Y++PE +R+A G
Sbjct: 540 NAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHAKGR 599
Query: 663 PLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
P+V +L LS+ ERIT+I+P+ EF + + M T G +KK SL F R GIIAI L
Sbjct: 600 PIVNLLPLSNKERITAILPIHEFKDNLNIFMATAQGIVKKSSLKEFKKPRIAGIIAINLR 659
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
DEL V + + + +QNG V+ + +R++ R G +++ DK+ S+ I
Sbjct: 660 ANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTMGRTASGVRGIKISKNDKVVSL-I 718
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
+P K S +L + +G+GKR ++ F G+I K
Sbjct: 719 VP-----------------YKKES---ILIATNNGYGKRTKITDFPIKSRATQGVISIKI 758
Query: 843 SAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ ++ + A+ VV +Q+++++ +GT+ RI+ +I + R +GVIL+R
Sbjct: 759 TKKNGKIIGAIQVV---------EKDQIMMITNAGTLVRIRASEIGVLKRNTQGVILIRT 809
Query: 901 ELSGKIQSASLISVTEP 917
+ K+ +L + EP
Sbjct: 810 SKNEKV--VALQRIVEP 824
>sp|P14829|GYRA_KLEOX DNA gyrase subunit A OS=Klebsiella oxytoca GN=gyrA PE=3 SV=1
Length = 876
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/875 (40%), Positives = 534/875 (61%), Gaps = 66/875 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AM+ LG K
Sbjct: 3 DLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKA 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ L+AD++++TV+FV N+D ++K P ++P ++P LL+NG+ GIAVGMATN
Sbjct: 123 TEIRMSKIAHE-LMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A + + E +++ L+E++PGPDFPT +I G GI +AYRTGRG++
Sbjct: 182 IPPHNLTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+ + EVE D+K+ R +I+ EIPYQ NK+ L+EKIAELV+ K ++GIS +RDESD+ G
Sbjct: 242 ICARAEVE-ADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
MRIVIE+KR A +V+N+LY T LQ SF NMV + GQPK M LKE++ AF+ R
Sbjct: 301 MRIVIEVKRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR L + ++R I+E + + L N+D +I ++R AP+ + A A L
Sbjct: 361 VVTRRTILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNV 420
Query: 489 -----------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
++ L+E+QA AILD+ L++LT LE +K +DE K L
Sbjct: 421 SAMLEAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 480
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEML 585
+EQI +L +L S ++++I +E+ ++ +F R + + A+S ++ D+I ++++
Sbjct: 481 LEQIAELLHILGSADRLMEVIREELELVREQFGDARRTDIT-ANSVDINIEDLITQEDVV 539
Query: 586 LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ +S +GYVK N + Q RG GKS +++ D + +V HD +L FS RG +Y
Sbjct: 540 VTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLY 599
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705
+ Y++PE +R A G P+V +L L ER T+I+PV E+ + M T +G +KK
Sbjct: 600 WMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVNVFMATASGTVKKTPA 659
Query: 706 NLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765
+ FS R+ GIIA+ L GDEL V + D V + S G V+ D +R++ R G
Sbjct: 660 DEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMGRTATG 719
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLS 825
++L DK+ S+ I+P + +L +E+G+ KR ++
Sbjct: 720 VRGIKLAGEDKVVSL-IVPRGEGR--------------------ILTATENGYRKRTAVA 758
Query: 826 SFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885
+ G+I K + + VVG +D +Q+++++ +GT+ RI+V ++
Sbjct: 759 EYPTKSRATQGVISIKVTERNG----SVVGAVQVDDC---DQIMMITDAGTLVRIRVSEV 811
Query: 886 SIQARYARGVILMRLELSGKIQSASLISVTEPETD 920
SI R +GVIL+R + +L V EP D
Sbjct: 812 SIVGRNTQGVILIRTAEDENV--VALQRVAEPVDD 844
>sp|P48369|GYRA_AERSA DNA gyrase subunit A OS=Aeromonas salmonicida GN=gyrA PE=3 SV=1
Length = 922
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/903 (39%), Positives = 538/903 (59%), Gaps = 114/903 (12%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
+++ I P+ + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LFAM+ELG KP
Sbjct: 3 DLAREITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKP 62
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+KK ARVVG+V+GK+HPHGD+AVYD++VR+AQDFS+RY L+ G GNFGS+D D AAAMRY
Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRY 122
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ +S LLAD+D++TV++VPN+D ++ P+++P ++P LL+NG+SGIAVGMA N
Sbjct: 123 TEVRMARISHE-LLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWN 181
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+V+ ALI N T+ EL+ Y+ GPDFPTG +I G GI+ AYRTGRG +
Sbjct: 182 IPPHNLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVY 241
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR K EVE+ D S+ +I+ E+PYQ NK+ L+EKIAELV+ K ++GIS +RDESD+
Sbjct: 242 VRAKAEVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDA 301
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
RIVIE+KRG IV+N+LY+ T LQ++F NMV + + QPK M LK++L AFL R
Sbjct: 302 CRIVIEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRRE 361
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------- 488
VV RR F+L + ++R HI+EG+ V L N+D +I ++R + + + A A L
Sbjct: 362 VVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNV 421
Query: 489 ------------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKT 524
+ ++ L+E+QA AILD+ L +LT LE K ++E ++
Sbjct: 422 AAMLEKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQS 481
Query: 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEM 584
L++ I +L +L+S + ++++I E++ ++ ++ R + A S +++ D+I +++
Sbjct: 482 LLDLIAELLFILASPERLMEVIRDELLAVREQYGDERPPEIS-ASSAEINIEDLITPEDV 540
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644
++ +S +GYVK + Q RG GKS +++ + + +V HD +L FS RG V
Sbjct: 541 VVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKV 600
Query: 645 YSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVS 704
Y + Y++PE +R A G P++ +L L +GERIT+I+PV E+A D+++ T +G +KK S
Sbjct: 601 YWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADGTVKKTS 660
Query: 705 LNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI--------------L 750
L+ FS ++GI AI L GDEL V + + + S G V+ +
Sbjct: 661 LSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPMQPMLM 720
Query: 751 SSCDI----------------------------------IRSLSRNTRGSVAMRLKDGDK 776
SS D+ +R + R G +RL +GDK
Sbjct: 721 SSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDK 780
Query: 777 MASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVG 836
+ S+ I+P +G +L +E+G+GK L+ + P G
Sbjct: 781 VVSL-IVP------------------RGEGA--ILTATENGYGKGTALTEY---PTKSRG 816
Query: 837 LIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVI 896
G + D V + + + +Q++L++ GT+ R +V ++SI R GV
Sbjct: 817 TQGVRSIKVDEDGKVSI------DQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVR 870
Query: 897 LMR 899
L+R
Sbjct: 871 LIR 873
>sp|P48372|GYRA_PSEAE DNA gyrase subunit A OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=gyrA PE=3 SV=1
Length = 923
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/900 (39%), Positives = 529/900 (58%), Gaps = 111/900 (12%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ I+PV + +E+ SY+ Y+MSV++GRALPD RDGLKPVHRR+L+AM ELG KP+
Sbjct: 4 LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK ARVVG+V+GK+HPHGD AVYD++VRMAQ FSLRY L+ G GNFGS+D D AAAMRYT
Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ L+ LLAD++++TV++VPN+D +++ P+++P ++P LL+NG+SGIAVGMATNI
Sbjct: 124 EVRMAKLAHE-LLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D AL+ NP+ T+ EL++Y+PGPDFPT G+I G GI++AYRTGRGRI +
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + VE ++ R +II E+PYQ NK+ L+EKIAELV+ K ++GIS++RDESD+ GM
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+VIEL+RG +V+N+LY T LQS F N+V ++DGQP+ + LK++L+ F+ R V
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASA------------- 486
V RR ++L + +ER HI+EG V L N+D VI +++ +P+ + A
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422
Query: 487 --------------------ALKD-EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
L+D ++ LS +QA AIL++ L RLT LE +K + E + +
Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEML 585
+ I +L +L++ ++++I +E+ +K F R + + A L D+I ++ +
Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIV-ASQVDLTIADLITEEDRV 541
Query: 586 LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ IS GY K + Q RG GKS ++ D + +V +H +L FS +G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVY 601
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ---------------- 689
R ++IPE +R A G PLV +L L +GERIT+++ + A Q
Sbjct: 602 WLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVL 661
Query: 690 ---------------------------FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV 722
++ M T G +KK L FS R++G+IA++L
Sbjct: 662 EGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLE 721
Query: 723 PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDI 782
GD L V + S G VI + ++R + RN RG MRL G ++ SM +
Sbjct: 722 EGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISM-L 780
Query: 783 IPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842
IP SG +L SE G GKR PLS F + G+I
Sbjct: 781 IP--------------------ESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVT 820
Query: 843 SAEDR--LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ + +AAV V + E+++L+S GT+ R +V ++S+ R +GV L++L
Sbjct: 821 NERNGALIAAVQV---------QEGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKL 871
Score = 33.5 bits (75), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND---AMSDFIVCRAHDHVLYFSDR 641
+L SE+G+ KR + F + RG G+ V + N+ A+ + + + ++ SD+
Sbjct: 788 ILTASERGFGKRTPLSKFPRRGRG--GQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQ 845
Query: 642 GIVYSARAYKIPECTRNAAGTPLVQILS 669
G + R ++ RN G L+++ S
Sbjct: 846 GTLVRTRVDEVSLSGRNTQGVTLIKLAS 873
>sp|D5ECW5|GYRA_AMICL DNA gyrase subunit A OS=Aminobacterium colombiense (strain DSM
12261 / ALA-1) GN=gyrA PE=3 SV=1
Length = 817
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/844 (42%), Positives = 525/844 (62%), Gaps = 44/844 (5%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
++VP+ L EE+ SY+ Y+MSV++GRALPD RDGLKPV RRIL+AM ELGL +KK
Sbjct: 12 KVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNTAYKKS 71
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
ARVVGE +GK+HPHGD+A+YD++VRMAQDFS+RYPL+ G GNFGSID DPAAAMRYTE R
Sbjct: 72 ARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEAR 131
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L + E ML ADIDQDTV++ PNFDES +EP LPA LP LL+NG+SGIAVGMATNIPPH
Sbjct: 132 LYEIGELML-ADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATNIPPH 190
Query: 263 NLGELVDVLCALIHN-PEAT-LQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
NL E+VD LC LI PE + E+L MPGPDFPTGGLI+G GI+DAYRTGRG+IT+R
Sbjct: 191 NLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYRTGRGKITMR 250
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
G+T +E + K + ++I EIPY NK+ L+E IA+ V++KT+DG+ D+RDESDR G+R
Sbjct: 251 GRTHIE--EGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREGLR 308
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
IVIE+ R DP++V+ LYR T LQS+F + ++DG PK++ ++E+L FL+ R SVV
Sbjct: 309 IVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGYPKELSIEEMLNIFLNHRRSVV 368
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500
RR +F+L + + R HIVEG++ LD +D VI ++R + + A L + SE QA
Sbjct: 369 RRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISKLDFSEAQAQ 428
Query: 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560
AIL+M L+RLT LER+K E L+ I + + +L + K + +I++E++E+K RF
Sbjct: 429 AILEMRLQRLTGLEREKLEAELAQLLSDIERYQTILGNPKVLDSVIKEELLEVKRRFGNE 488
Query: 561 RLSMLEDADSGQLDDI---DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
R + + DA ++D+ D+IP ++++ +S GY++R + LQ RG G+ L
Sbjct: 489 RKTEIIDA----VEDVSIEDLIPESDIVVVLSRDGYLRRKDLQEYTLQGRGGKGRKGTAL 544
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+ D ++ V H + F+ +G V + + Y IPE ++ G + + ++L +GER+
Sbjct: 545 QEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIPE-SKTGRGKLINRFVALEEGERVV 603
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
++ + G ++ +T+ G K++ L+ ++ G + L GDE+ + + DD
Sbjct: 604 TMHGRA-VDGAKYAFFITLRGTAKRLDLSELENLTRAGRRVMGLDEGDEISQIVLTSGDD 662
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ + + G + + R + R RG +RL+ D + D++
Sbjct: 663 HLLIVTAQGQALRTHESEFRPMGRTARGVRGIRLRKNDYVIGCDVV-------------- 708
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG-F 856
++G W L +SE+G GKR F G+I S DR +VG +
Sbjct: 709 -------ANGRWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLS--DRTG--LIVGCW 757
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916
S+AE +++V ++ G + R+ V + + R A G I+MRL+ + +AS++S +
Sbjct: 758 SVAE----GDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTED 813
Query: 917 PETD 920
E D
Sbjct: 814 GEDD 817
>sp|P43700|GYRA_HAEIN DNA gyrase subunit A OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=gyrA PE=3 SV=1
Length = 880
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/859 (40%), Positives = 523/859 (60%), Gaps = 49/859 (5%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
++ I PV + EE+ SY+ Y+MSV++GRALPDVRDGLKPVHRR+LF+M G ++ K
Sbjct: 4 SIQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKK 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
+ K ARVVG+V+GK+HPHGD+AVYD++VRMAQ FSLRY L+ G GNFGSID D AAMRY
Sbjct: 64 YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R++ +++A LL D+D++TVNF PN+D P +LP R+P LL NG+SGIAVGMATN
Sbjct: 124 TEVRMQKITQA-LLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNL E+++ A I E T+ EL++++PGPDFPT LI G GI +AYRTGRG++
Sbjct: 183 IPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVY 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
VR + VE ++ R +I+ E+PYQ NK+ LVEKIAEL+ K ++GIS+I D S++ G
Sbjct: 243 VRARATVET--NEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+RI I++KR A +V+N LY LT +Q +F NMV + GQP+ LKE+++AF+ R
Sbjct: 301 IRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEAFVLHRRE 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK--------- 489
VV RR+ F+L + +ER HI+EG+ V N+D +I I+R + + A+ ++
Sbjct: 361 VVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSD 420
Query: 490 ----------------------DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLME 527
+++ LS Q +AIL++ L RLT + ++ + E + L+
Sbjct: 421 IINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLV 480
Query: 528 QILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLA 587
+I L +LSS + ++++I +E+ E+K +F RL+ + A SG +D D+I +++++
Sbjct: 481 KIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEI-TAASGDIDLEDLIAQEDVVVT 539
Query: 588 ISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSA 647
+S +GYVK + Q RG GKS K++ D + +V HD +L FS RG +Y
Sbjct: 540 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWL 599
Query: 648 RAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNL 707
+ Y++P+ +R A G P+V IL L + ERIT+I+PVS + D+F+VM T G +KK++L
Sbjct: 600 KVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTE 659
Query: 708 FSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSV 767
FS R+ GIIA+ L DEL V + + + S G V+ + + +R++ R G
Sbjct: 660 FSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVR 719
Query: 768 AMRLK-------DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGK 820
++L D + DI L+ + S V +L +++G+GK
Sbjct: 720 GIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGK 779
Query: 821 RVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880
R LS + N G+I K S +R V A E +Q++L++ +GT+ R
Sbjct: 780 RTQLSEYPTKSRNTKGVISIKVS--ERNGKVVA-----ATQVEETDQIMLITDAGTLVRT 832
Query: 881 KVRDISIQARYARGVILMR 899
+V ++SI R +GV L+R
Sbjct: 833 RVSEVSIVGRNTQGVRLIR 851
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 34/231 (14%)
Query: 557 FSTPR---LSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 613
FS PR + L D +L +DI ++ S +G V R N R G
Sbjct: 660 FSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVR 719
Query: 614 VGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDG 673
KL + + +SD A +I + + + A L L+
Sbjct: 720 GIKLALTNDISD--------------------DESAVEIEDISDDNAEASL----DLNID 755
Query: 674 ERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF--SSIRTTGIIAIQLVPGD-ELKWV 730
+ ++ ++P E A ++ T NGY K+ L+ + S T G+I+I++ + ++
Sbjct: 756 KVVSLVVPKGEGA----ILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811
Query: 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD 781
D + + + G ++ + + + RNT+G +R D + + S++
Sbjct: 812 TQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862
>sp|Q03470|GYRA_CAMJE DNA gyrase subunit A OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrA PE=3 SV=1
Length = 863
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/848 (41%), Positives = 529/848 (62%), Gaps = 56/848 (6%)
Query: 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVV 146
V++ + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM SR F K AR+V
Sbjct: 14 VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 73
Query: 147 GEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEAL 206
G V+G++HPHGD AVYD+LVRMAQDFS+RYP I G GNFGSID D AAAMRYTE ++ L
Sbjct: 74 GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 133
Query: 207 SEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266
S LL DID+DTV+FVPN+D S+ EP +LP+R+P LLLNG+SGIAVGMATNIPPH+L E
Sbjct: 134 SHE-LLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNE 192
Query: 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326
L+D L L+ N +A+L+E+++++ GPDFPTGG+I G GI++AYRTGRGR+ VR KT +E
Sbjct: 193 LIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 252
Query: 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELK 386
K+ + ++I E+PYQTNK+ L+E+IAELV+ + ++GIS++RDES++ G+R+VIELK
Sbjct: 253 ---KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVVIELK 309
Query: 387 RGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARF 446
R A IV+N+L++ T ++S+F M+ I + +PK L E+L FL R +V+ RR F
Sbjct: 310 REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIF 369
Query: 447 KLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506
+L + + R HI+EG+ + LDN+D VI +++ + N+TA +L +F LSE QA+AILDM
Sbjct: 370 ELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMK 429
Query: 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566
L RLT LER+K +E LM++I +LEE+L S + LI E+ E++++F PR++ +E
Sbjct: 430 LGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIE 489
Query: 567 DADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDF 626
D +D D+IPN+ M++ I+ +GY+KR+ + Q RG GK +D + F
Sbjct: 490 -DDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 548
Query: 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA 686
HD +++ +DRG +Y + YKIPE +R A G +V +++L E+I +IIP ++F
Sbjct: 549 FTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD 608
Query: 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG 746
+ L T NG +K+ +L+ + +IR+ G+ AI L DEL + A+ Q
Sbjct: 609 ESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDEL----------VTAIIVQ-- 656
Query: 747 MVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806
+D D++ + ++++E +++ N + S
Sbjct: 657 -------------------------RDEDEIFATGGEENLENQEIENLDDENLENEESVS 691
Query: 807 --GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGE 863
G L V++ G + PL+ R++ G+ KF + D L V+ E
Sbjct: 692 TQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVI--------E 743
Query: 864 SDEQVVL-VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDLF 922
+DEQ +L +S G R + +Q+R +GVI M+ L+ K + + + + DL
Sbjct: 744 NDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMK--LTEKTKDLISVVIVDETMDLM 801
Query: 923 LPSTSDKL 930
++S K+
Sbjct: 802 ALTSSGKM 809
>sp|P48371|GYRA_NEIGO DNA gyrase subunit A OS=Neisseria gonorrhoeae GN=gyrA PE=3 SV=1
Length = 916
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/926 (38%), Positives = 524/926 (56%), Gaps = 117/926 (12%)
Query: 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCAR 144
+PV L +EM SY+ Y+MSV++GRALPDVRDGLKPVHRR+L+AMHEL + +KK AR
Sbjct: 17 LPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSAR 76
Query: 145 VVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLE 204
+VG+V+GK+HPHGD+AVYD++VRMAQ+F++RY LI G GNFGS+D AAAMRYTE R+
Sbjct: 77 IVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMA 136
Query: 205 ALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264
+S ML ADI+++TVNF PN+D S+ EP +LP R PTLL+NG+SGIAVGMATNIPPHNL
Sbjct: 137 KISHEML-ADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNL 195
Query: 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTE 324
+ ++ L+ P+ + EL++ + PDFPTG I G G+ + Y+TGRGR+ +RGKT
Sbjct: 196 TDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVVMRGKTH 255
Query: 325 VELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIE 384
+E + +R ++I EIPYQ NK+ LVEKI +LV KTL+GIS++RDESD+SGMR+VIE
Sbjct: 256 IEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIE 315
Query: 385 LKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRA 444
LKR + +V+N LY+LT LQ SF NMV ++DGQP+ + LK++L FL R VV RR
Sbjct: 316 LKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRT 375
Query: 445 RFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL---------------- 488
F+L + + HI E V L N+D +I++++E+P+ + A L
Sbjct: 376 LFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEMLTR 435
Query: 489 --------------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQ 528
K + LSE QADAIL M+LR LT L++K+ ++ K LM +
Sbjct: 436 SGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGK 495
Query: 529 ILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAI 588
I+ ++LS + I Q+I E+ E+K + R S + + G + D D+IP EM++ +
Sbjct: 496 IIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEI-NPFGGDIADEDLIPQREMVVTL 554
Query: 589 SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSAR 648
+ GY+K + Q RG GK + D + V HD+++ F++ G + +
Sbjct: 555 THGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIK 614
Query: 649 AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708
YK+PE RN+ G P+ ++ L +GE++++I+ V EF DQ++ T G +KKV L+ F
Sbjct: 615 VYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAF 674
Query: 709 SSIRTTGIIAIQLVPGDEL--------------------------KWVRCCTN------- 735
++R GI AI L GD L W + +
Sbjct: 675 KNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADI 734
Query: 736 -----DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD 790
DDL + N + S + +R R + G MRL K+ S+
Sbjct: 735 ETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKIVSL---------- 784
Query: 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRL 848
+ PE S ++ +L + +G+GKR P++ + + G I D +
Sbjct: 785 ITFAPETEESGLQ------VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLV 838
Query: 849 AAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL-------- 900
AA V GE+D+ ++L++ G + R KV I R A GV L+ L
Sbjct: 839 AATLV--------GETDD-LMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVS 889
Query: 901 -----ELSGKIQSASLIS-VTEPETD 920
E ++ AS+IS VTEPE +
Sbjct: 890 LERVAEDESELSGASVISNVTEPEAE 915
>sp|Q1RID9|GYRA_RICBR DNA gyrase subunit A OS=Rickettsia bellii (strain RML369-C) GN=gyrA
PE=3 SV=1
Length = 905
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/891 (40%), Positives = 541/891 (60%), Gaps = 67/891 (7%)
Query: 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKP 138
N S +VPV + +EM SY+ Y+MSV++ RA+PDVRDGLKPVHRRI+++MHE G + +
Sbjct: 4 NNSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRA 63
Query: 139 FKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRY 198
++K AR+VG+V+GK+HPHGD+A+YDSLVRMAQDFSLR PL+ G GNFGS+D D AAAMRY
Sbjct: 64 YRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRY 123
Query: 199 TECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATN 258
TE R+ ++ L+ DID++TV+F PN+D S++EPS+LP+ P LL+NG+ GIAVGMATN
Sbjct: 124 TESRMAKVAHK-LIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATN 182
Query: 259 IPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
IPPHNLGE++D C + N + + +LLE + GPDFPT G+I+G GI AY TGRG I
Sbjct: 183 IPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIA 242
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG 378
+RG+ E+E L + R +II EIPY NK+ LVEKIAE+V+ K ++GISD+RDES+++G
Sbjct: 243 IRGRAEIENLGNG--RQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNG 300
Query: 379 MRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCS 438
+RI IELK+ +V+N +Y T LQ+SF M+ + DG PK M LKEV+ AF+ FR
Sbjct: 301 IRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREV 360
Query: 439 VVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS------------- 485
V+ R + L++ +++ HI+ G+ + + N+D +IRI++ A + A
Sbjct: 361 VITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNI 420
Query: 486 ----------AALKDEFKLS--EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLE 533
A L +E K S E QA AIL+M L+RLT +E+ K ++ K L +I +
Sbjct: 421 LPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYL 480
Query: 534 ELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGY 593
+L SR+ +L+++++E+I++K F+TPRL+ +E + Q D D+I +EM++ ++ GY
Sbjct: 481 NILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQ-DIEDLIQREEMVVTVTLGGY 539
Query: 594 VKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIP 653
+KR+ +++ Q RG G+S +R D + V H +L+FS+ G VYS + YK+P
Sbjct: 540 IKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLP 599
Query: 654 ECTRNAAGTPLVQILSLSDGERITSIIPVSEFA--GDQFLVML-TMNGYIKKVSLNLFSS 710
G P+V IL L E IT+I+P+ E D +M T G I++ L F
Sbjct: 600 LSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKK 659
Query: 711 IRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAM 769
I++ G IAI+L D+L V+ C D+ + +A+++G + + +R + SR + G M
Sbjct: 660 IQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGM 719
Query: 770 RLKDGDKMASMDIIPA--------------ALHKDLERTP-EDSHSNVKG---------- 804
RL + D + SM ++ + K LE E+ +S G
Sbjct: 720 RLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAESILE 779
Query: 805 --SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDG 862
+S ++L V+E+G GKR +R G+I + + L VVG +
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL----VVGVMPVK-- 833
Query: 863 ESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913
D++++L++ SG + R K+ + I R GV L RL+ K+ SASLI+
Sbjct: 834 -MDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIA 883
>sp|Q89AS3|GYRA_BUCBP DNA gyrase subunit A OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=gyrA PE=3 SV=1
Length = 847
Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/854 (38%), Positives = 523/854 (61%), Gaps = 65/854 (7%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
V+ I+ +++ +E+ SY+ Y+MSV++GRALPDVRDGLKPVHRRILFAM L K +
Sbjct: 4 VAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTY 63
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
KK AR+VG+V+GK+HPHGD AVYD++VRMAQ FSLRY LI G GNFGSID D AAAMRYT
Sbjct: 64 KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMRYT 123
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++ LL D+D++TV+F N+D ++K P +LPA++P LL+NG+SGIAVGMATNI
Sbjct: 124 EIRMSKIAYE-LLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNI 182
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHN+ E+++ A I + TL++L+E++PGPDFPT GLI G GI AY+TG+G+I +
Sbjct: 183 PPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIYI 242
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R K+ +E+ K+ +I E+PYQ NK+ +++ IA LV+ K ++GI+ +RDESD+ GM
Sbjct: 243 RAKSIIEIQKKTKKKSIIIY-ELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGM 301
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
RIVIE+K+ I++N LY LT L+ SF NMV ++ GQPK M LKE+L AF++ R +
Sbjct: 302 RIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKI 361
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALK---------- 489
+ RR+ F+L++++++ HI+EG+++ LDN+D +I +++++ + A LK
Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421
Query: 490 ------------------------DEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTL 525
+F L+ +Q AIL++ L++LT LE KK + E K L
Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481
Query: 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEML 585
+ LE +L + + ++++ E+I++++ F R + + + + ++ D+I + ++
Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKI-NVNYSDINTSDLINKENVV 540
Query: 586 LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVY 645
+ +S GYVK +++ Q RG GK K + D + + +V HD +L FS +GI+Y
Sbjct: 541 ITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILY 600
Query: 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705
+ Y++PE +R+A G P+V +L LS ERIT+I+P+SE+ + M T G +KK SL
Sbjct: 601 WMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSL 660
Query: 706 NLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765
F RT GIIAI L DEL V ++ + + + G + S ++R R G
Sbjct: 661 YEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRKTGRTAIG 720
Query: 766 SVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLS 825
+++K DK+ S+ ++P H N+ L ++E G+GKR +
Sbjct: 721 VQGIKIKKSDKVVSL-VVPK------------KHGNI--------LLITEHGYGKRTEIH 759
Query: 826 SFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885
F G I K + ++ + V+G + +Q+++++ +GT+ R +V +I
Sbjct: 760 EFPIKSRATQGTIAMKITKKNGI----VIGTMQVVN---QDQIIIITNAGTLVRTRVLEI 812
Query: 886 SIQARYARGVILMR 899
I R +GVI++R
Sbjct: 813 GILGRNTQGVIIIR 826
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 12/203 (5%)
Query: 589 SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSAR 648
+ KG VK K + + + T G L+ +D + + ++ ++ F+ +G
Sbjct: 650 TSKGMVK--KTSLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFS 707
Query: 649 AYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708
+ + R A G VQ + + +++ S++ V + G+ ++++T +GY K+ ++ F
Sbjct: 708 EILVRKTGRTAIG---VQGIKIKKSDKVVSLV-VPKKHGN--ILLITEHGYGKRTEIHEF 761
Query: 709 --SSIRTTGIIAIQLVPGDELKW-VRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765
S T G IA+++ + + N D + + + G ++ + I L RNT+G
Sbjct: 762 PIKSRATQGTIAMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQG 821
Query: 766 SVAMRLKDGDKMASMDIIPAALH 788
+ +R +K+ ++ ALH
Sbjct: 822 VIIIRTSKKEKVVALQ-KANALH 843
>sp|Q92IZ6|GYRA_RICCN DNA gyrase subunit A OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=gyrA PE=3 SV=1
Length = 905
Score = 632 bits (1631), Expect = e-180, Method: Compositional matrix adjust.
Identities = 358/899 (39%), Positives = 539/899 (59%), Gaps = 83/899 (9%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +VPV + +EM SY+ Y+MSV++ RA+PDVRDGLKPVHRRI+++MHE G + KP++
Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+A+YD+LVRMAQDFSLR PL+ G GNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ +S L+ DID++TV+F PN+D S++EPS+LPA P LL+NG+ GIAVGMATNIP
Sbjct: 126 SRMAKVSYK-LVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D C I N + + +LLE + GPDFPTG +I+G GI AY TGRG I +R
Sbjct: 185 PHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
G+ E+E + + R +II EIPY NK+ LVEKIAE+V+ K ++GISD+RDES+++G+R
Sbjct: 245 GRAEIE--NIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
I IELK+ +V+N +Y T LQ+SF M+ + DG PK M LKEV+ AF+ FR V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTA---------------- 484
R + L++ ++R HI+ G+ + + N+D +IRI++ + ++ A
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILP 422
Query: 485 -------SAALKDEFK--LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEEL 535
A L ++ K +E QA AIL+M L+RLT +E+ K ++ K L+ +I + +
Sbjct: 423 LVKLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNI 482
Query: 536 LSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVK 595
L SR +L+++++E+I++K F+TPRL+ +E + Q D D+I +EM++ ++ GY+K
Sbjct: 483 LGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQ-DIEDLIQREEMVVTVTLGGYIK 541
Query: 596 RMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC 655
R+ +++ Q RG G+S +R D + V H +L+FS+ G VYS + YK+P
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601
Query: 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAG--DQFLVML-TMNGYIKKVSLNLFSSIR 712
G P+V IL L E IT+I+P+ E D +M T G I++ L F ++
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAMRL 771
+ G IAI+L D+L V+ C D+ + +A++ G + + +R + SR + G M+L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721
Query: 772 KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW---------------------- 809
D + SM ++ K + T ED + + S PW
Sbjct: 722 AKEDSVISMTVL-----KGISSTKEDRDAYL---SVPWEQRLEIAKGEAFNPEELGVSLT 773
Query: 810 -------------LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGF 856
+L V+E+G GKR +R G+I + + L VVG
Sbjct: 774 APAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL----VVGV 829
Query: 857 SLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
+ D++++L++ SG + R K+ + I R GVIL +L+ K+ S SLI+ T
Sbjct: 830 MPV---KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885
>sp|P47235|GYRA_CAMFE DNA gyrase subunit A OS=Campylobacter fetus GN=gyrA PE=3 SV=1
Length = 862
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 351/849 (41%), Positives = 529/849 (62%), Gaps = 55/849 (6%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I +++ + + SY+ YSMSV++GRALPD RDGLKPVHRRIL+AM++LG+ SR P+KK A
Sbjct: 12 IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSPYKKSA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD AVYD+LVRMAQ+FS+R P + G GNFGS+D D AAAMRYTE R+
Sbjct: 72 RIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDGDGAAAMRYTEARM 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
L+E LL D+D+DTV+F+PN+D+S EP +LPAR+P LLLNG+SGIAVGMATNIPPH+
Sbjct: 132 TVLAEE-LLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L ELV+ L L+ + E L++++ ++ GPDFPTGG+I G GI++AY+TGRGRI +R KT
Sbjct: 191 LDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEAYKTGRGRIKLRAKT 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+E K + +++ E+PYQ NK+ L IA+LV+ K +DGIS++RDESDR G+R+VI
Sbjct: 251 HIE---KKPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRDESDRDGIRLVI 307
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A IV+N+L++ T ++ +F M+ I + +PK L E+L+ FL+ R +V+ RR
Sbjct: 308 ELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRR 367
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
F+L + + R HI+EG+ + LDN+D VI +++ + ++A L +F LSE Q++AIL
Sbjct: 368 TIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAIL 427
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM L +LT LER+K E K ++E I KL+ +L S I +I E++E+K++F PR++
Sbjct: 428 DMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRIT 487
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
+ D +D D+IPN+ M++ I+ +GY+KR+ ++ Q RG GK +D +
Sbjct: 488 DIV-DDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFI 546
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVS 683
F C +HD +++ +DRG +Y + YKIPE +R A G +V ++SL E+I +IIP +
Sbjct: 547 ESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTT 606
Query: 684 EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMAS 743
+F + L T NG +K+ +L+ F +IR+ G+ AI L ND+LV +
Sbjct: 607 DFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINL-----------DDNDELVTVVI 655
Query: 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803
N S D +DG+ ++++ I ED+ N
Sbjct: 656 ANSEPDESYDD---------------SFEDGEGVSNLQTI-----------SEDNSEN-S 688
Query: 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDG 862
SG L V++ G + L+ R++ G+ +F D + V+
Sbjct: 689 LESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVI-------- 740
Query: 863 ESDEQVVL-VSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVTEPETDL 921
E+D Q +L VSQ G R + +Q+R +GVI M+ L+ K + + + + E DL
Sbjct: 741 ENDSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMK--LTPKTKDLVGVVMVDEEMDL 798
Query: 922 FLPSTSDKL 930
++S K+
Sbjct: 799 MALTSSGKM 807
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 578 IIPND-EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH-- 634
+I ND + +L++S+KG KR + + LQ+RG GK V +++ D + D
Sbjct: 739 VIENDSQEILSVSQKGIGKRTTADEYRLQSRG--GKGVICMKLTPKTKDLVGVVMVDEEM 796
Query: 635 -VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSI 679
++ + G + I + RN +G +V + DG+ + SI
Sbjct: 797 DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNV----DGDEVVSI 838
>sp|Q4UKM1|GYRA_RICFE DNA gyrase subunit A OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=gyrA PE=3 SV=1
Length = 906
Score = 631 bits (1628), Expect = e-180, Method: Compositional matrix adjust.
Identities = 361/894 (40%), Positives = 541/894 (60%), Gaps = 79/894 (8%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VPV + +EM SY+ Y+MSV++ RA+PDVRDGLKPVHRRI+++M+E G + KP++K A
Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VG+V+GK+HPHGD+A+YDSLVRMAQDFSLR PL+ G GNFGS+D D AAAMRYTE R+
Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+S L+ DID++TV+F PN+D S++EPS+LPA P LL+NG+ GIAVGMATNIPPHN
Sbjct: 129 AKVSHK-LVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
LGE++D C I N + + +LLE + GPDFPTG +I+G GI AY TGRG I +RG+
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRA 247
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + + R +II EIPY NK+ LVEKIAE+V+ K ++GISD+RDES+++G+RI I
Sbjct: 248 EIE--NIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELK+ +V+N +Y T LQ+SF M+ + DG PK M LKEV+ AF+ FR V+ R
Sbjct: 306 ELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS------------------ 485
+ L++ ++R HI+ G+ + + N+D +IRI++ A +N A+
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIK-ASNNPNAAKQELMARSWDALNILPLV 424
Query: 486 ------AALKDEFKLS--EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
A L ++ K S E QA AIL+M L+RLT +E+ K ++ K L +I + +L
Sbjct: 425 KLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
SR +L+++++E+I++K F+TPRL+ +E + Q D D+I +EM++ ++ GY+KR+
Sbjct: 485 SRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQ-DIEDLIQREEMVVTVTLGGYIKRV 543
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+++ Q RG G+S +R D + V H +L+FS+ G VYS + YK+P
Sbjct: 544 PLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNP 603
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSEFA--GDQFLVML-TMNGYIKKVSLNLFSSIRTT 714
G P+V IL L + E IT+I+P+ E D +M T G I++ L F I++
Sbjct: 604 QGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSN 663
Query: 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAMRLKD 773
G IAI+L D+L V+ C D+ + +A++ G + + +R + SR + G M+L
Sbjct: 664 GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAK 723
Query: 774 GDKMASMDIIPAALHKDLERTPEDSHSNV-----------KG------------------ 804
D + SM ++ K + T ED + + KG
Sbjct: 724 EDSVISMTVL-----KGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTLTADSIL 778
Query: 805 ---SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAED 861
+S ++L V+E+G GKR +R G+I + + L VVG
Sbjct: 779 EMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL----VVGVMPV-- 832
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISVT 915
+ D++++L++ SG + R K+ + I R GVIL +L+ K+ S SLI+ T
Sbjct: 833 -KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885
>sp|Q18GY3|GYRA_HALWD DNA gyrase subunit A OS=Haloquadratum walsbyi (strain DSM 16790)
GN=gyrA PE=3 SV=1
Length = 856
Score = 630 bits (1625), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/860 (40%), Positives = 527/860 (61%), Gaps = 60/860 (6%)
Query: 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPF 139
++ + + EM SYI Y+MSV+ GRALPD RDGLKPVHRRIL+AMH+ G+S+R
Sbjct: 15 IAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARSAH 74
Query: 140 KKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYT 199
+K + +VGE +G +HPHGD+A+Y++L RMAQDFS+R PL+ G GNFGS+D DP AAMRYT
Sbjct: 75 RKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMRYT 134
Query: 200 ECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNI 259
E R+ ++E LL +I+ DTV F N+D+ EP++LPA P LL+NG+SGIAVGM+TNI
Sbjct: 135 EARMSPIAEE-LLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTNI 193
Query: 260 PPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITV 319
PPHNLGE++D LIH+PE T+++L+ ++ GPDFPTG I+G I AY+TGRGR+ V
Sbjct: 194 PPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAIYKAYKTGRGRVRV 253
Query: 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGM 379
R + +V+ D + ++I E+P+QTNK+ LVE+IA+ V T++GI D+RDESDR G+
Sbjct: 254 RAEFDVQ--DDR-----IVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGI 306
Query: 380 RIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSV 439
R+V+ELKRGA+P IV N L L+S+F + ++DGQP+ + LKE L +L+ R +V
Sbjct: 307 RVVVELKRGANPDIVKNQLLE-HHLESTFGVINLALVDGQPQVLTLKETLHEYLEHRRTV 365
Query: 440 VERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE-------- 491
V RR++++L + ++R HI+EG + L+ +D V+ I+R + A AAL+ E
Sbjct: 366 VRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESDER 425
Query: 492 ------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQL 545
F SE QA+ I+ M L LT LE + DE +++ E+I +L+ +L++ + +
Sbjct: 426 GESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPDELDAV 485
Query: 546 IEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQ 605
+E E+ ++++++ R + + + D G + D+I +++++ ++E Y+KRM F Q
Sbjct: 486 VEDELATIRDKYADERRTRIIE-DDGTVTHEDLIAQEDVVVVVTEDDYIKRMSLEDFRSQ 544
Query: 606 NRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665
+RG G L+ D +S V HD++LYF+ G VY + Y+IPE +R A G V
Sbjct: 545 HRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPEMSRTARGKSAV 604
Query: 666 QILSLSDGERITSIIPVSEFAGD----QFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQL 721
+L L DGE+IT+++ +E D ++ M+T +GYIK+ S+N F +IR+TGIIAI L
Sbjct: 605 NLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQNIRSTGIIAISL 664
Query: 722 VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMD 781
D+L V + + + ++ GM I + +RS+ R+ RG ++L+D D +A++
Sbjct: 665 GADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSVGRSARGVHGIKLEDTDAVAAL- 723
Query: 782 IIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841
+ V W+L V+E G+GKR + +R+ N GLI K
Sbjct: 724 ------------------AAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGLIDIK 765
Query: 842 FSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ + + V VG S +++ ++S+ G + R V DIS R GVI+M L
Sbjct: 766 TNERNGHVCEVETVGIS--------DELFMMSRKGQILRTPVDDISTVGRNTMGVIVMDL 817
Query: 901 ELSGKIQSASLISVTEPETD 920
E + + S T P TD
Sbjct: 818 EDTDTVASVD----THPRTD 833
>sp|P48354|GYRA_MYCS2 DNA gyrase subunit A OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrA PE=3 SV=1
Length = 842
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 334/825 (40%), Positives = 500/825 (60%), Gaps = 39/825 (4%)
Query: 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 142
RI PV++ +EM SYI Y+MSV++GRALP+VRDGLKPVHRR+L+AM++ G + K
Sbjct: 15 RIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKS 74
Query: 143 ARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECR 202
AR V E +G +HPHGD ++YD+LVRMAQ +SLRYPL+ G GNFGS DP AAMRYTE R
Sbjct: 75 ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 134
Query: 203 LEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPH 262
L L+ M L +ID++TV+F+PN+D +EP++LP+R P LL NG+ GIAVGMATNIPPH
Sbjct: 135 LTPLAMEM-LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193
Query: 263 NLGELVDVLCALIHN----PEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRIT 318
NLGEL + + + N EAT + ++E + GPDFPT GLI+G GI D Y+TGRG I
Sbjct: 194 NLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQGIEDTYKTGRGSIK 253
Query: 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE-SDRS 377
+RG E+E DS+ R ++I E+PYQ N + IAE V + L GIS+I D+ SDR
Sbjct: 254 MRGVVEIE-EDSRG-RTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV 311
Query: 378 GMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRC 437
G+RIV+ELKR A +V+N+LY+ T LQ+SF NM+ I+DG P+ + L ++++ ++D +
Sbjct: 312 GLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVDHQL 371
Query: 438 SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEK 497
V+ RR R++L + ER HI+ G++ LD LD VI ++R + + A A L + + +
Sbjct: 372 DVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDIDDI 431
Query: 498 QADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557
QA AILDM LRRL LER+K VD+ + +I LE++L+ + ++ E+ E+ ++
Sbjct: 432 QAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKH 491
Query: 558 STPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL 617
R + + AD G++ D D+I +++++ I+E GY KR K + + Q RG G L
Sbjct: 492 GDARRTRIVPAD-GEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL 550
Query: 618 RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERIT 677
+ +D ++ F VC HD +L+F+ +G VY A+AY++PE +R A G + +L+ ERI
Sbjct: 551 KQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIA 610
Query: 678 SIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737
+I + + +LV+ T NG +KK L+ F S R+ GI+AI L GDEL C+ +D
Sbjct: 611 QVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAED 670
Query: 738 LVAMASQNGMVILSSC--DIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTP 795
+ + S NG I S + +R + R T G MR + D++ S++++ P
Sbjct: 671 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVV----------RP 720
Query: 796 EDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVG 855
+ +LL + G+ KR + + G++ ++ DR VG
Sbjct: 721 D-----------TYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQY---DRKRGSL-VG 765
Query: 856 FSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRL 900
+ +D D ++ ++ +G V R R + R +GV LM L
Sbjct: 766 ALIVDD---DTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNL 807
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 15/202 (7%)
Query: 585 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRG-- 642
L+ + G VK+ K + F+ G G LR D + ++C A D +L S G
Sbjct: 624 LVLATRNGLVKKSKLSDFDSNRSG--GIVAINLREGDELVGAVLCSAEDDLLLVSANGQS 681
Query: 643 IVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKK 702
I +SA + R +G VQ + ++ +R+ S+ V D +L++ T GY K+
Sbjct: 682 IRFSATDEALRPMGRATSG---VQGMRFNEDDRLLSLNVVRP---DTYLLVATSGGYAKR 735
Query: 703 VSLNLFS--SIRTTGIIAIQL--VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRS 758
S++ +S GI+ IQ G + + + +L A+ S G VI ++ +R
Sbjct: 736 TSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTGG-VIRTAARQVRK 794
Query: 759 LSRNTRGSVAMRLKDGDKMASM 780
R T+G M L +GD + ++
Sbjct: 795 AGRQTKGVRLMNLAEGDTLIAI 816
>sp|O83051|GYRA_TREPA DNA gyrase subunit A OS=Treponema pallidum (strain Nichols) GN=gyrA
PE=3 SV=1
Length = 813
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 335/822 (40%), Positives = 508/822 (61%), Gaps = 34/822 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
+VP+ + E+ +YI YSMSV++ RALPDVRDGLKPVHRRIL+AM E GL P +KCA
Sbjct: 12 LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
++VG+VLG FHPHGD +VYD+LVR+ QDFSLRYP+I GNFG+I DP AA RYTE ++
Sbjct: 72 KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++E+M+ DI ++TV+FVPNFD+S EP++LP R P LL NG+SGIAVGM TN+PPHN
Sbjct: 132 ARIAESMV-EDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHN 190
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E+ + A I NP ++QEL + + GPDFPTGG+I G GI +Y TGRG+I VR +
Sbjct: 191 LREIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARF 250
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE-SDRSGMRIV 382
+E DSK R +I E+PYQ N +MLV +I EL K ++GI+++ DE SDR+G+RIV
Sbjct: 251 TIET-DSKG-RDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIV 308
Query: 383 IELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVER 442
+ELK+G +V+N L+ T LQSSF+ + +++G+P+ + LK++++ F++ R VV R
Sbjct: 309 VELKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTR 368
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
RA F+L + +ER H+V ++ LD +D++I ++R + + A L+++F QA AI
Sbjct: 369 RAHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAI 428
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
+DM ++RLT LE + E K L E I LEELL+S + +L ++++E ++ + F R
Sbjct: 429 VDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRR 488
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + LD D I +EM++ IS GY+KR+ + + QNRG G S L +D
Sbjct: 489 TDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDF 548
Query: 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV 682
+S HD+V++ + RG Y + Y IPE R G+ + +L ++ E IT+I+ +
Sbjct: 549 ISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSL 608
Query: 683 SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742
EF+ ++ M T G +KKV+ + F + +T GIIA++L GD L ++D V +
Sbjct: 609 REFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQDEDEVMLI 668
Query: 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802
++ G + S +R + RN+ G + G K+ S D++ L +R
Sbjct: 669 TRQGKALRMSGREVREMGRNSSGVI------GIKLTSEDLVAGVLRVSEQRK-------- 714
Query: 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK-FSAEDRLAAVFVVGFSLAED 861
+L ++E+G+GKRV SF + ++ G G K ++ DR A ++G D
Sbjct: 715 -------VLIMTENGYGKRV---SFSEFSVHGRGTAGQKIYTQTDRKGA--IIGALAVLD 762
Query: 862 GESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELS 903
+DE + + Q T+ R+ V IS+ R A+GV ++ +E S
Sbjct: 763 --TDECMCITGQGKTI-RVDVCAISVLGRGAQGVRVLDIEPS 801
>sp|Q0BST5|GYRA_GRABC DNA gyrase subunit A OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=gyrA PE=3 SV=1
Length = 940
Score = 621 bits (1601), Expect = e-177, Method: Compositional matrix adjust.
Identities = 356/935 (38%), Positives = 542/935 (57%), Gaps = 102/935 (10%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++PV L EEM+ SY+ Y+MSV++ RALPD RDGLKPVHRRIL+ M E G ++ KP++K A
Sbjct: 22 LMPVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSA 81
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+ G+V+GK+HPHGD A+YD+LVR+AQ FSLR PLI G GNFGS+D DPAAA RYTE RL
Sbjct: 82 RINGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARL 141
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
A S + LL DID+DTV+F PN+D+S+ EP +LPA P LL+NGA GIAVGMAT IP HN
Sbjct: 142 -ARSASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHN 200
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
E++D A+I NP+ TL EL+ +PGPDFPTGGLI+G GI A+ TG+G ITVR +T
Sbjct: 201 PTEVIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRART 260
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
+ E + + R ++I EIPYQ NK+ L E++AELV K ++GISDIRDESDRSG+R+VI
Sbjct: 261 DFE--EVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVI 318
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
ELKR A P +V+N L+R T LQ S+ NM+ + GQP+ MGL++VL F+ FR V+ RR
Sbjct: 319 ELKRDATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRR 378
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE------------ 491
ARF+L++ ++R H++ G+ + + N+D VIR++R++P +++A AL +
Sbjct: 379 ARFELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLT 438
Query: 492 --------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLS 537
+L+E QA IL++ L+RLT LER K +E + + +I +L E++
Sbjct: 439 LIDDGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIG 498
Query: 538 SRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRM 597
S ++++ +E+ ++ ++PR S + D+ + Q DD +I +M++ I+ G++KR
Sbjct: 499 SHIRRMEVMREELAVIRAELNSPRRSEINDSLADQ-DDESLIEPGQMVVTITRDGFIKRT 557
Query: 598 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657
+ F Q+RG G++ +R +D ++ H VL+FS G Y + +++PE
Sbjct: 558 PLDVFRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGP 617
Query: 658 NAAGTPLVQILSLSDGERITSIIPVSE----FAGDQFLVMLTMNGYIKKVSLNLFSSIRT 713
A G LV +L + IT+++P+ + + G LV T +G I++ L+ F ++R
Sbjct: 618 TAKGRALVNLLPELGSDGITAVLPLPQDESLWEG-LHLVFATASGGIRRNRLSDFKNVRA 676
Query: 714 TGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI--LSSCDIIRSLS-RNTRGSVAMR 770
+G+IA++L GD L V C D + +AS+ G I ++ D +R + R + G M+
Sbjct: 677 SGLIAMKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMK 736
Query: 771 LKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG----------------------- 807
L GD++ S+ ++ + +E TPE+ + ++ +S
Sbjct: 737 LAQGDEVISLSVL-----RHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSE 791
Query: 808 --------------------PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED- 846
+LL V+ +G GKR +R G+ + +
Sbjct: 792 VTVDDTALSPERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNG 851
Query: 847 -RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGK 905
+AA F V + V+LV+ +G + R+ + I R GV L R++
Sbjct: 852 RAVAATFPV--------RPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEV 903
Query: 906 IQSASLISVTEP------ETDLFLPSTSDKLATES 934
+ S + TE + D P+ D T+S
Sbjct: 904 VTSVFPVLETESVDDNGDDADSVAPAAPDGQVTDS 938
>sp|Q8P116|GYRA_STRP8 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrA PE=3 SV=1
Length = 828
Score = 620 bits (1599), Expect = e-176, Method: Compositional matrix adjust.
Identities = 335/848 (39%), Positives = 527/848 (62%), Gaps = 47/848 (5%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
++ V L EM S+I Y+MSV++ RALPDVRDGLKPVHRRIL+ M+ELG++ KP KK A
Sbjct: 6 LIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSA 65
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+ G+V+GK+HPHGD+++Y+++VRMAQ +S R+ L+ GHGNFGS+D D AAA RYTE R+
Sbjct: 66 RITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARM 125
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
++ LL DI+++TVNF N+D S++EP +LPAR P LL+NGA+GIAVGMATNIPPHN
Sbjct: 126 SKIA-LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHN 184
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L E +D + ++ +P+ T +EL+E +PGPDFPTG L+MG GI AY TG+G I +R +T
Sbjct: 185 LAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSRT 244
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E + +R +++ E PY NK+ + E I L + K L+GI+ +RDES R G+R VI
Sbjct: 245 EIETTQTGRER--IVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERR 443
E++R A ++++N+L++LT+LQ++FS NM+ I +G PK + L++++ ++ ++ V+ RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIRR 362
Query: 444 ARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503
RF + + R HI+EG+++ LD+LD VI I+R + ++ A L F LSE+Q+ AIL
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQSQAIL 422
Query: 504 DMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563
DM LRRLT LER K E L+ I L ++L+ + I+ +I++E+ E+K +++ PR +
Sbjct: 423 DMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYANPRRT 482
Query: 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAM 623
L + L+D D+I +++L+ +S KGY+KR+ + F Q RG G + +D +
Sbjct: 483 ELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFV 542
Query: 624 SDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPV- 682
+ + HD +L+F++ G VY +AY+IPE R A G P+V +L L DGE I +II
Sbjct: 543 RELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINAR 602
Query: 683 -SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741
E AG F T G +K+ ++ F++IR G+ A++L GD+L V + D + +
Sbjct: 603 KEETAGKSFF-FTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIII 661
Query: 742 ASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801
+ +G + + IR++ R+ G ++L++ D+ ++ A+ +D +
Sbjct: 662 GTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDR-----VVGASRIRDNQE-------- 708
Query: 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS----AEDRLAAVFVVGFS 857
+L ++E+G GKR + + P G G K + +LA + V
Sbjct: 709 --------VLVITENGFGKRTSATDY---PTKGRGGKGIKTANITPKNGQLAGLVTV--- 754
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI----- 912
DG D +++++ G + R V +IS R GV +M+L+ KI + +L+
Sbjct: 755 ---DGTED--IMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDS 809
Query: 913 SVTEPETD 920
S+ E TD
Sbjct: 810 SIAEINTD 817
>sp|C5CHA8|GYRA_KOSOT DNA gyrase subunit A OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=gyrA PE=3 SV=1
Length = 812
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 341/835 (40%), Positives = 518/835 (62%), Gaps = 39/835 (4%)
Query: 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 143
I+ +++EM SY+ YSMSV++GRA+PDVRDGLKPV R+ILF M ELGL + +KK A
Sbjct: 5 IISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSA 64
Query: 144 RVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRL 203
R+VGEV+GKFHPHGD A+YD+LVRMAQ FS+RYPLI+G GNFGSID DP AAMRYTE R+
Sbjct: 65 RIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEARM 124
Query: 204 EALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHN 263
+ L+E LLADID++TV +PNFD S EP +LPA+ P LL+NGASGIAVGM TNIPPHN
Sbjct: 125 QRLAEE-LLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPHN 183
Query: 264 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323
L ELV+ L ALI NP+AT++EL+EY+ GPDFPTGG+IMG GI Y TGRGR+ VRG
Sbjct: 184 LSELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGVA 243
Query: 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVI 383
E+E ++ ++I EIPY +K+ L+++IA + +N + ++RDESD+ G+R+VI
Sbjct: 244 EIEEAKGGTR---IVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVI 300
Query: 384 ELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQ-PKQMGLKEVLQAFLDFRCSVVER 442
ELKRGADP++V+N LY+ T LQ++F +M+ I + + PK M LKE+ QAF+ R VV+R
Sbjct: 301 ELKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKR 360
Query: 443 RARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAI 502
R ++L Q ++ HI+EG+ +D V+ I+R + + AS L++ +++ +Q+ AI
Sbjct: 361 RTEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQETLEITPEQSQAI 420
Query: 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562
L+M L +LT LE K V E L+E+I + E+LS KNI Q+I++E+ EL+ ++ R
Sbjct: 421 LEMRLGKLTALEIDKLVTEYAELVEKIKEYREILSDDKNIYQIIKKELQELEAQYGDARR 480
Query: 563 SMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 622
+ + + + D+IP+DE+++ +++KGY+K + Q RG GK + ++ DA
Sbjct: 481 TKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKATPLEDYRKQGRG--GKGIRGVKTTDA 538
Query: 623 --MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT-RNAAGTPLVQILSLSDGERITSI 679
+++ + + + +G Y Y++ ECT R++ G L + + E + ++
Sbjct: 539 DFVTNVVSTTRLSKTVVITSKGKAYFINNYEL-ECTSRSSRGKLLANYVKIEPDETVQAV 597
Query: 680 IPVS-EFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN-DD 737
+ V E ++ L++ T G IK+ F + RT+GI AI L GD + T+ ++
Sbjct: 598 LSVKREEVANKHLIITTRKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVDAGISTSEEE 657
Query: 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPED 797
+ ++++ GMVI IR + R G AM L+ D++ S I+ P D
Sbjct: 658 TIIISTRKGMVIRFPISQIRPMGRTAAGVKAMALRGDDEVVSATIV----------LPVD 707
Query: 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFS 857
+L +E G GKR PLS +R P +R G+ +R +VVG
Sbjct: 708 ER---------YLFTATERGVGKRTPLSEYR--PQHRAGMGVKNIYGLERTG--YVVGSL 754
Query: 858 LAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ + ++++++++++G RI DI R +GV ++ L + S +++
Sbjct: 755 VVTN---EDEIIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASLAVV 806
>sp|P41080|GYRA_RICPR DNA gyrase subunit A OS=Rickettsia prowazekii (strain Madrid E)
GN=gyrA PE=3 SV=1
Length = 905
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 353/893 (39%), Positives = 533/893 (59%), Gaps = 77/893 (8%)
Query: 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFK 140
S +VPV + +EM SY+ Y+MSV++ RA+PDVRDGLKPVHRRI+++M+E G + KP++
Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65
Query: 141 KCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTE 200
K AR+VG+V+GK+HPHGD+A+YDSLVRMAQDFSLR PL+ G GNFGS+D D AAAMRYTE
Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125
Query: 201 CRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260
R+ ++ L+ DID+ TV+F N+D S++EPS+LPA P LL+NG+ GIAVGMATNIP
Sbjct: 126 SRMAKVAHK-LVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIP 184
Query: 261 PHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320
PHNLGE++D C I N + + +LLE + GPDFPTG +I+G GI AY TGRG I +R
Sbjct: 185 PHNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMR 244
Query: 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMR 380
GK E+E + + R +II EIPY NK+ LVEKIAE+V+ K ++GISD+RDES+++G+R
Sbjct: 245 GKAEIE--NVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIR 302
Query: 381 IVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVV 440
I IELK+ +V+N +Y T LQ++F M+ + DG PK M LKEV+ AF+ FR V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362
Query: 441 ERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAAL------------ 488
R + L++ ++R HI+ G+ + + N+D +I I++ + + A L
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILP 422
Query: 489 -------------KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEEL 535
+ +E QA AIL+M L+RLT +E++K + K L I + +
Sbjct: 423 LIKLVDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNI 482
Query: 536 LSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVK 595
L+SR +L+++++E+I++K F++PRL+ +E + Q D D+I +EM++ ++ GY+K
Sbjct: 483 LASRTRLLEILKEELIKVKEEFASPRLTSIEFGEFDQ-DIEDLIQREEMVVTVTLGGYIK 541
Query: 596 RMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC 655
R+ +++ Q RG G+S +R D + V H +L+FS+ G VYS + YK+P
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLS 601
Query: 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFA--GDQFLVML-TMNGYIKKVSLNLFSSIR 712
G P+V ILSL + E IT+I+P+ E D +M T G I++ L F I+
Sbjct: 602 NPQGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQ 661
Query: 713 TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSL-SRNTRGSVAMRL 771
+ G IAI+L D+L V+ C D+ + +A++ G + + +R + SR + G M+L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKL 721
Query: 772 KDGDKMASMDIIPAALHKDLERTPEDSHSNV-----------KG---------------- 804
D + SM ++ K + T ED + + KG
Sbjct: 722 AKEDSVISMTVL-----KGINSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVNLNADS 776
Query: 805 -----SSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLA 859
+S ++L V+E+G GKR +R G+I + + L VVG
Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL----VVGVMPV 832
Query: 860 EDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912
+ D++++L++ SG + R K+ + I R GVIL +L+ K+ S SLI
Sbjct: 833 ---KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,397,758
Number of Sequences: 539616
Number of extensions: 14629002
Number of successful extensions: 43278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 42198
Number of HSP's gapped (non-prelim): 289
length of query: 941
length of database: 191,569,459
effective HSP length: 127
effective length of query: 814
effective length of database: 123,038,227
effective search space: 100153116778
effective search space used: 100153116778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)