Query 002290
Match_columns 941
No_of_seqs 365 out of 2337
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 20:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13979 DNA topoisomerase IV 100.0 4E-204 9E-209 1847.3 87.9 815 81-913 10-906 (957)
2 TIGR01063 gyrA DNA gyrase, A s 100.0 6E-201 1E-205 1814.4 86.4 798 84-913 1-799 (800)
3 COG0188 GyrA Type IIA topoisom 100.0 6E-202 1E-206 1783.0 75.9 791 84-913 8-801 (804)
4 PRK05560 DNA gyrase subunit A; 100.0 4E-200 9E-205 1810.5 87.3 800 81-913 2-802 (805)
5 TIGR01061 parC_Gpos DNA topois 100.0 4E-194 8E-199 1735.4 78.6 732 84-844 1-735 (738)
6 PRK05561 DNA topoisomerase IV 100.0 1E-187 3E-192 1679.2 73.9 721 80-842 6-735 (742)
7 TIGR01062 parC_Gneg DNA topois 100.0 4E-181 9E-186 1606.6 72.5 677 84-785 1-690 (735)
8 PRK09631 DNA topoisomerase IV 100.0 1E-143 2E-148 1259.9 59.8 603 88-769 3-624 (635)
9 PRK12758 DNA topoisomerase IV 100.0 2E-139 4E-144 1236.6 75.0 739 85-913 19-829 (869)
10 cd00187 TOP4c DNA Topoisomeras 100.0 2E-140 4E-145 1202.2 47.8 441 106-553 1-445 (445)
11 smart00434 TOP4c DNA Topoisome 100.0 8E-134 2E-138 1153.2 45.1 438 87-541 1-443 (445)
12 PHA02592 52 DNA topisomerase I 100.0 2E-124 4E-129 1064.6 45.1 430 84-555 3-439 (439)
13 PF00521 DNA_topoisoIV: DNA gy 100.0 2E-125 4E-130 1086.9 34.8 425 108-551 1-426 (426)
14 PRK09630 DNA topoisomerase IV 100.0 4E-117 9E-122 984.7 45.6 449 88-571 3-468 (479)
15 PLN03128 DNA topoisomerase 2; 100.0 2E-110 4E-115 1032.8 39.9 441 83-557 649-1134(1135)
16 PLN03237 DNA topoisomerase 2; 100.0 9E-108 2E-112 1008.2 41.2 443 83-558 674-1166(1465)
17 PTZ00108 DNA topoisomerase 2-l 100.0 3E-106 6E-111 1000.7 37.4 440 83-559 656-1143(1388)
18 KOG0355 DNA topoisomerase type 100.0 5.2E-39 1.1E-43 375.0 11.4 168 85-280 645-814 (842)
19 PRK13979 DNA topoisomerase IV 100.0 4.9E-34 1.1E-38 351.0 27.1 244 583-848 672-951 (957)
20 KOG0355 DNA topoisomerase type 100.0 1.7E-37 3.6E-42 362.5 -33.7 813 21-898 13-830 (842)
21 TIGR01061 parC_Gpos DNA topois 100.0 3.3E-28 7.3E-33 295.1 22.0 198 687-913 496-696 (738)
22 TIGR01063 gyrA DNA gyrase, A s 99.9 4.3E-27 9.3E-32 288.6 22.5 197 580-784 600-799 (800)
23 PRK05560 DNA gyrase subunit A; 99.9 4.3E-27 9.3E-32 289.1 22.5 198 581-785 603-803 (805)
24 PRK05561 DNA topoisomerase IV 99.9 8.1E-26 1.8E-30 274.6 22.6 189 686-914 505-697 (742)
25 TIGR01062 parC_Gneg DNA topois 99.9 1.2E-24 2.6E-29 262.1 23.2 191 687-915 493-691 (735)
26 COG0188 GyrA Type IIA topoisom 99.8 4.8E-20 1E-24 222.4 18.5 196 580-783 599-800 (804)
27 PF03989 DNA_gyraseA_C: DNA gy 98.5 1.4E-07 3E-12 76.1 6.0 47 737-783 1-47 (48)
28 PF03989 DNA_gyraseA_C: DNA gy 98.5 2.4E-07 5.2E-12 74.7 5.7 47 866-912 1-47 (48)
29 PRK09631 DNA topoisomerase IV 97.6 0.00087 1.9E-08 81.1 15.2 136 715-899 480-625 (635)
30 PRK12758 DNA topoisomerase IV 97.4 0.0028 6.1E-08 78.3 15.4 153 691-899 487-650 (869)
31 KOG1240 Protein kinase contain 94.0 1.8 3.9E-05 55.4 17.6 188 652-878 1029-1220(1431)
32 cd00200 WD40 WD40 domain, foun 83.1 58 0.0013 33.3 26.3 147 578-754 59-207 (289)
33 KOG1240 Protein kinase contain 76.0 53 0.0012 43.0 15.2 165 575-749 1053-1220(1431)
34 KOG2911 Uncharacterized conser 74.3 29 0.00064 40.5 11.5 89 459-554 290-383 (439)
35 KOG1539 WD repeat protein [Gen 73.7 1.4E+02 0.0031 37.7 17.5 154 630-827 122-277 (910)
36 PLN03237 DNA topoisomerase 2; 71.0 31 0.00068 46.3 12.1 33 430-462 1016-1048(1465)
37 PF04201 TPD52: Tumour protein 68.9 8.9 0.00019 39.1 5.2 42 508-549 24-65 (162)
38 PF08317 Spc7: Spc7 kinetochor 67.2 80 0.0017 35.9 13.3 15 427-441 134-148 (325)
39 smart00787 Spc7 Spc7 kinetocho 65.2 1E+02 0.0023 35.0 13.5 46 513-558 218-263 (312)
40 TIGR02894 DNA_bind_RsfA transc 63.1 34 0.00074 35.0 8.0 107 432-562 46-153 (161)
41 cd00200 WD40 WD40 domain, foun 63.1 1.8E+02 0.0039 29.6 29.2 189 578-826 17-208 (289)
42 PF00780 CNH: CNH domain; Int 58.8 2.6E+02 0.0057 30.1 18.8 68 628-712 3-70 (275)
43 PF04799 Fzo_mitofusin: fzo-li 57.5 33 0.00072 35.5 7.0 53 507-559 114-169 (171)
44 PF12325 TMF_TATA_bd: TATA ele 55.6 2.1E+02 0.0046 28.0 12.0 46 513-558 68-113 (120)
45 PF12761 End3: Actin cytoskele 55.5 88 0.0019 33.1 9.8 46 496-541 134-188 (195)
46 KOG4010 Coiled-coil protein TP 54.1 24 0.00052 36.6 5.3 45 507-558 38-82 (208)
47 PRK06771 hypothetical protein; 51.5 1.3E+02 0.0027 28.2 9.0 70 431-501 15-88 (93)
48 PTZ00464 SNF-7-like protein; P 51.5 1.5E+02 0.0032 31.8 11.1 54 503-556 114-172 (211)
49 COG5184 ATS1 Alpha-tubulin sup 50.7 2.2E+02 0.0048 34.0 13.0 176 574-768 177-373 (476)
50 TIGR03300 assembly_YfgL outer 50.6 2.1E+02 0.0046 32.5 13.2 136 582-751 241-376 (377)
51 PF04762 IKI3: IKI3 family; I 48.9 2E+02 0.0044 37.6 13.8 117 622-749 23-154 (928)
52 PF04762 IKI3: IKI3 family; I 47.5 2.3E+02 0.005 37.1 14.0 100 727-851 24-137 (928)
53 PF05529 Bap31: B-cell recepto 47.2 1.2E+02 0.0025 31.8 9.5 40 511-557 152-191 (192)
54 PRK05431 seryl-tRNA synthetase 44.6 1.1E+02 0.0024 36.3 9.7 82 472-557 4-89 (425)
55 KOG0963 Transcription factor/C 44.1 3.6E+02 0.0079 33.3 13.7 47 512-559 316-363 (629)
56 KOG4212 RNA-binding protein hn 43.8 33 0.00071 40.0 4.9 63 337-401 47-109 (608)
57 KOG1920 IkappaB kinase complex 43.1 9.8E+02 0.021 32.1 18.3 68 621-696 69-138 (1265)
58 PHA00728 hypothetical protein 42.9 29 0.00063 33.5 3.7 44 513-559 5-48 (151)
59 PRK11138 outer membrane biogen 41.5 4.2E+02 0.0092 30.5 13.9 100 631-753 293-393 (394)
60 PLN02678 seryl-tRNA synthetase 40.9 1.9E+02 0.0041 34.6 10.9 61 472-533 4-67 (448)
61 KOG2758 Translation initiation 40.6 1.1E+02 0.0024 34.8 8.1 69 424-501 63-131 (432)
62 TIGR03300 assembly_YfgL outer 39.2 6.2E+02 0.013 28.7 23.1 56 807-880 320-376 (377)
63 PF14326 DUF4384: Domain of un 38.9 2.1E+02 0.0046 25.6 8.6 77 616-697 2-81 (83)
64 PF10458 Val_tRNA-synt_C: Valy 38.0 52 0.0011 28.4 4.2 30 513-542 4-33 (66)
65 KOG0291 WD40-repeat-containing 36.2 8.7E+02 0.019 30.9 15.3 179 577-763 41-228 (893)
66 TIGR00414 serS seryl-tRNA synt 34.6 2.3E+02 0.0049 33.6 10.3 59 472-533 4-64 (418)
67 PF11197 DUF2835: Protein of u 33.6 92 0.002 27.4 5.0 46 865-910 20-67 (68)
68 PF02403 Seryl_tRNA_N: Seryl-t 33.5 2.2E+02 0.0048 26.7 8.2 53 480-533 10-63 (108)
69 smart00806 AIP3 Actin interact 32.9 2.7E+02 0.0059 32.9 10.1 41 515-555 252-293 (426)
70 PF09440 eIF3_N: eIF3 subunit 32.5 2.6E+02 0.0056 27.9 8.6 70 424-504 59-128 (133)
71 PRK13711 conjugal transfer pro 32.4 22 0.00047 32.2 1.0 19 242-260 27-47 (113)
72 KOG2910 Uncharacterized conser 32.3 2.1E+02 0.0045 30.2 8.1 44 512-555 118-163 (209)
73 PF04841 Vps16_N: Vps16, N-ter 30.5 9.5E+02 0.021 28.2 14.9 152 580-752 89-244 (410)
74 PTZ00446 vacuolar sorting prot 29.7 5.9E+02 0.013 27.0 11.2 48 507-554 124-174 (191)
75 PF11834 DUF3354: Domain of un 29.4 45 0.00097 29.4 2.4 39 548-587 29-68 (69)
76 PHA03011 hypothetical protein; 28.9 2.5E+02 0.0054 26.5 7.2 65 492-558 52-116 (120)
77 TIGR00999 8a0102 Membrane Fusi 28.7 7.5E+02 0.016 26.5 14.6 39 688-728 218-257 (265)
78 PF04977 DivIC: Septum formati 27.4 1.7E+02 0.0036 25.5 5.9 33 515-547 26-62 (80)
79 COG3879 Uncharacterized protei 27.3 1.6E+02 0.0034 32.4 6.6 45 514-558 58-106 (247)
80 PF14779 BBS1: Ciliary BBSome 27.0 4.1E+02 0.0089 29.5 9.8 91 548-648 159-256 (257)
81 TIGR02209 ftsL_broad cell divi 26.6 1.8E+02 0.004 25.9 6.1 36 515-550 33-71 (85)
82 PRK11138 outer membrane biogen 26.6 1E+03 0.022 27.3 22.5 59 807-882 335-393 (394)
83 KOG1920 IkappaB kinase complex 26.5 2.2E+02 0.0048 37.6 8.6 58 725-782 69-128 (1265)
84 PF00571 CBS: CBS domain CBS d 26.1 45 0.00097 26.8 1.8 40 146-185 1-42 (57)
85 PRK09458 pspB phage shock prot 26.0 77 0.0017 28.4 3.3 26 515-540 44-69 (75)
86 KOG1274 WD40 repeat protein [G 25.8 1.4E+03 0.03 29.7 14.9 173 620-824 474-654 (933)
87 PF11197 DUF2835: Protein of u 25.5 1.3E+02 0.0028 26.5 4.6 44 736-780 20-66 (68)
88 KOG4603 TBP-1 interacting prot 25.1 2.9E+02 0.0064 28.6 7.6 40 500-540 81-120 (201)
89 COG1579 Zn-ribbon protein, pos 25.1 5E+02 0.011 28.5 9.9 8 495-502 87-94 (239)
90 PF08596 Lgl_C: Lethal giant l 24.8 7.1E+02 0.015 29.3 12.0 126 623-761 141-297 (395)
91 COG2739 Uncharacterized protei 23.7 3.9E+02 0.0085 25.5 7.5 53 423-475 34-88 (105)
92 PRK10548 flagellar biosynthesi 23.2 84 0.0018 30.7 3.4 55 527-581 63-117 (121)
93 PF12761 End3: Actin cytoskele 23.2 1.3E+02 0.0029 31.8 5.0 45 511-555 94-142 (195)
94 KOG0649 WD40 repeat protein [G 23.1 1.1E+03 0.023 26.3 13.7 154 580-748 20-180 (325)
95 PRK02119 hypothetical protein; 22.9 2.9E+02 0.0064 24.5 6.4 48 512-559 8-55 (73)
96 KOG3621 WD40 repeat-containing 22.8 6E+02 0.013 31.9 10.9 113 628-755 41-155 (726)
97 KOG3584 cAMP response element 22.8 1.4E+02 0.0031 33.2 5.2 18 541-558 326-343 (348)
98 PF14727 PHTB1_N: PTHB1 N-term 21.8 8.7E+02 0.019 28.9 11.9 118 627-756 181-320 (418)
99 KOG0319 WD40-repeat-containing 21.6 1.7E+03 0.038 28.2 19.7 104 582-705 250-353 (775)
100 PRK02290 3-dehydroquinate synt 21.3 1.2E+03 0.026 27.0 12.4 73 807-908 252-324 (344)
101 KOG3129 26S proteasome regulat 21.3 8.2E+02 0.018 26.5 10.2 21 615-635 155-175 (231)
102 KOG0995 Centromere-associated 21.2 1.1E+03 0.024 29.1 12.5 47 513-559 339-385 (581)
103 KOG0979 Structural maintenance 21.1 2E+03 0.044 28.8 16.9 199 353-556 77-305 (1072)
104 PF14395 COOH-NH2_lig: Phage p 21.0 91 0.002 34.3 3.4 42 260-301 57-103 (261)
105 PF06810 Phage_GP20: Phage min 20.9 2.3E+02 0.005 28.8 6.1 21 514-534 28-48 (155)
106 PF11629 Mst1_SARAH: C termina 20.8 64 0.0014 26.5 1.6 33 530-565 11-43 (49)
107 PF07569 Hira: TUP1-like enhan 20.7 3.4E+02 0.0073 29.1 7.7 20 631-650 21-40 (219)
108 PLN03128 DNA topoisomerase 2; 20.5 2.5E+02 0.0055 37.5 7.8 33 430-462 989-1021(1135)
109 TIGR00219 mreC rod shape-deter 20.4 1.2E+03 0.026 26.0 14.9 44 514-560 67-110 (283)
110 COG5185 HEC1 Protein involved 20.3 1.3E+03 0.028 27.9 12.4 116 430-549 231-363 (622)
111 COG0216 PrfA Protein chain rel 20.3 2.3E+02 0.005 32.6 6.3 45 514-558 47-93 (363)
112 TIGR00135 gatC glutamyl-tRNA(G 20.1 1.4E+02 0.0031 27.4 4.1 42 494-535 1-42 (93)
113 PF03112 DUF244: Uncharacteriz 20.1 5.3E+02 0.012 26.2 8.1 39 492-530 61-101 (158)
No 1
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=4.1e-204 Score=1847.27 Aligned_cols=815 Identities=38% Similarity=0.641 Sum_probs=759.5
Q ss_pred CCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhh
Q 002290 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNA 160 (941)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s 160 (941)
+++|++++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|
T Consensus 10 ~~~i~~~~~~~~~~~~yl~Ya~~vi~~RAlPd~rDGLKPvqRrILyam~~~~~~~~~~~~K~A~ivG~v~g~YHPHGd~s 89 (957)
T PRK13979 10 DNNIIKIPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPHGDSS 89 (957)
T ss_pred cCceeeecHHHHHHHHHHHhHHHHHHhhcCCccccCCCchHhHHHHHHHHcCCCCCCCceeehhhHHhHHhccCCCchHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccc
Q 002290 161 VYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240 (941)
Q Consensus 161 ~y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~i 240 (941)
+|||||||||+|+||||||||||||||+|||+|||||||||||+++|+.| ++|+|+++|+|+|||||++.||+||||+|
T Consensus 90 iy~alvrmaQ~f~~~~plidg~GnFGs~dgd~~AA~RYte~rl~~~a~~~-~~d~d~~~v~~~~n~d~~~~EP~vlp~~~ 168 (957)
T PRK13979 90 VYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEM-LRDIDKDVVNMVDNYSDSEKEPEVLPARY 168 (957)
T ss_pred HHHHHHHHhhhccccceeEeCCCCCCCCCCCchhhhhhhhhcchHHHHHH-hhccCccccccccCCCCCeeccccccccC
Confidence 99999999999999999999999999999999999999999999999996 68999999999999999999999999999
Q ss_pred ceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEE
Q 002290 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320 (941)
Q Consensus 241 P~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~r 320 (941)
||||||||+|||||||||||||||+|||+||+++|+||+++++||++++|||||||||+|.+.+|+.++|+||+|++++|
T Consensus 169 P~lLvNG~~GIavG~aT~Ipphnl~evi~a~~~~i~~~~~~~~~l~~~~~gpDfptGg~i~~~~~i~~~y~tg~G~~~~r 248 (957)
T PRK13979 169 PNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKVTLR 248 (957)
T ss_pred CceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhhccCCCCCCCeEEECchhHHHHhhcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCC----CCccccccccCCCCceEEEEEeCCCCCh---HH
Q 002290 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKT----LDGISDIRDESDRSGMRIVIELKRGADP---SI 393 (941)
Q Consensus 321 g~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~----i~~I~di~Des~~~girivi~lk~~~~~---~~ 393 (941)
|++++|... .++++|+||||||++|+++|+++|++|+.+|+ ++||+|++||||++|+||+|+||+++++ +.
T Consensus 249 ~k~~~e~~~--~~~~~ivitEiPy~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~desd~~g~rivi~lk~~~~~~~~~~ 326 (957)
T PRK13979 249 AKTKIEKLE--NGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEFKKSADEDVAEK 326 (957)
T ss_pred EEEEEEEcC--CCceEEEEEccCCcccHHHHHHHHHHHHhcccccccCccccchhhccCCCceEEEEEECCCCCcccHHH
Confidence 999999754 35678999999999999999999999998776 8999999999999999999999999885 88
Q ss_pred HHHHHHhhcccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHH
Q 002290 394 VVNSLYRLTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIR 473 (941)
Q Consensus 394 ~~~~L~k~t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~ 473 (941)
++++|||+|+||++|++||++|+||+|+.+++++||++|++||+++|+||++|+|+++++|+||++|++++++++|+||+
T Consensus 327 v~~~L~~~t~l~~~~~~n~~~~~~~~p~~~~l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~ 406 (957)
T PRK13979 327 VLKYLYKKTDLQCNISFNMVALADGKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIK 406 (957)
T ss_pred HHHHHHHhCCCeeEeeeeEEEEECCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 002290 474 IVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553 (941)
Q Consensus 474 iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~el 553 (941)
+||+|++.++|++.|++.|+||+.||+|||+|+|||||++|+.||++|+++|+++|++|+.||+|+++++++|++||.++
T Consensus 407 ~ir~s~~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~ei 486 (957)
T PRK13979 407 TIRSSKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEV 486 (957)
T ss_pred HHHcCCCHHHHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccccccCC-CCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCC
Q 002290 554 KNRFSTPRLSMLEDAD-SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAH 632 (941)
Q Consensus 554 k~kfg~~RRT~I~~~~-~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~ 632 (941)
|++||+||||+|..+. +.+++.+|+|++|+++|++|++|||||++.++|..|++| ..+++++++|.+.+++.|++|
T Consensus 487 k~kygd~RRT~I~~~~~~~~i~~edlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g---~~~~~~ke~D~i~~~~~~~T~ 563 (957)
T PRK13979 487 KEKYGDERRTSIIEDDEKAKIDVEELIVVEDVVITLSNEGFIKRIPLKSYNRSNSN---VEDIEYREGDFNKFLIQSNTK 563 (957)
T ss_pred HHHhCCCCCeeeccccccccCCHhHcCCCcceEEEEecCCEEEEcccccccccccc---ccccccCCCCceEEEEEEcCC
Confidence 9999999999997542 346888999999999999999999999999999888764 567889999999999999999
Q ss_pred ceEEEEccCCeEEEEEecccCCcCccccCcccccccc-cC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccc
Q 002290 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILS-LS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710 (941)
Q Consensus 633 d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~-L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~ 710 (941)
|+|+|||+.|++|++++|+||+++|+++|.|++++++ +. ++|+|++++++++|.++.+++++|++|++||+++++|..
T Consensus 564 d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~ 643 (957)
T PRK13979 564 DTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVT 643 (957)
T ss_pred CEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccc
Confidence 9999999999999999999999999999999999996 76 799999999999887788999999999999999999998
Q ss_pred cccCceEEEecCCCCeEEEEEEecCC---CeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccc
Q 002290 711 IRTTGIIAIQLVPGDELKWVRCCTND---DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAAL 787 (941)
Q Consensus 711 ~~r~G~~~ikLk~gD~Lv~v~~~~~~---d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~ 787 (941)
.++ |+.+++|++||+|+++..+.++ +.|+++|++|+++||++++||.+||.++||++|+|++||+|+++.++....
T Consensus 644 ~r~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D~Vv~~~~~~~~~ 722 (957)
T PRK13979 644 NYT-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYE 722 (957)
T ss_pred ccc-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCCEEEEEEEEhhhh
Confidence 765 6999999999999999998864 569999999999999999999999999999999999999999998875200
Q ss_pred ccccc----CC-----------------------------------------CCCC-C----------CC----------
Q 002290 788 HKDLE----RT-----------------------------------------PEDS-H----------SN---------- 801 (941)
Q Consensus 788 ~~~~~----~~-----------------------------------------~~~~-~----------~~---------- 801 (941)
...+. .. +.++ + ..
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe~~~kG~~i~nll~~l~~~E~Ii~i~~ 802 (957)
T PRK13979 723 YKEFYVNINKKGIIKISDKDNKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQNIKNEGINISALTGDFEKDEKIIKIIS 802 (957)
T ss_pred hcchhhhcccccceeecccccccccceeecCCceEEEEecCCeEEEEEeeecccccccCcCHHHhhcccCCCCeEEEEEe
Confidence 00000 00 0000 0 00
Q ss_pred -CCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCC-CCceEEEEecCCeEE
Q 002290 802 -VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGE-SDEQVVLVSQSGTVN 878 (941)
Q Consensus 802 -~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~-~~deIllvT~~G~~i 878 (941)
.....+.+++++|++|++||+++++|...+| |..+|+|++ +|+|+++.++ + ++++|+++|++|+++
T Consensus 803 ~~~~~~~~~Ll~vTk~G~iKRt~lsef~~~rr---~~~aikLke~~DeLV~v~~v--------~~~~~eIvL~T~~G~~i 871 (957)
T PRK13979 803 IFEFEEDLSIYFFSKKGLVKKTLLNEFKGEGN---STQAYKFKHKEDELVNVDIK--------EHEEKNILLITEKGMAI 871 (957)
T ss_pred ecccCCCceEEEEecCCcEEEeEHHHhcccCC---CeEEEEecCCCCeEEEEEEe--------cCCCCEEEEEECCCeEE
Confidence 0001234699999999999999999999875 368899986 6999999876 3 467899999999999
Q ss_pred EEecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 879 RIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 879 R~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
||++++||++||.++||++|+|.++|+|+++.++.
T Consensus 872 Rf~~~eIr~~GR~A~GVk~I~L~~~D~Vv~~~~i~ 906 (957)
T PRK13979 872 RFKSEAVNPMGKIASGVTGISLKDEDKVIYGSIID 906 (957)
T ss_pred EEEhHHCCcccccCCCeEEEEeCCCCEEEEEEEEc
Confidence 99999999999999999999999999999998884
No 2
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=100.00 E-value=6.2e-201 Score=1814.40 Aligned_cols=798 Identities=49% Similarity=0.837 Sum_probs=771.5
Q ss_pred ceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHH
Q 002290 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYD 163 (941)
Q Consensus 84 i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~ 163 (941)
|++++|+++|+++|++||||||.+|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+||
T Consensus 1 i~~~~~~~~~~~~~~~ya~~vi~~RaiP~~~DGlKPvqRril~~~~~~~~~~~~~~~K~a~~~G~v~~~YHpHGd~s~~~ 80 (800)
T TIGR01063 1 IVPVNIEEEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDSAIYD 80 (800)
T ss_pred CeeecHHHHHHHHHHHHHHHHHhhccCCchhcCCCchhhhhhHhHHhhCCCCCCCceeehhhhhhHhhccCCCchHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccccee
Q 002290 164 SLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243 (941)
Q Consensus 164 aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~l 243 (941)
|||+|||+|+||+|||+|||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+++||+||||+||||
T Consensus 81 a~v~maq~f~~~~pl~~~~GnfGs~~g~~~Aa~RY~e~rls~~~~~~-~~~~d~~~v~~~~n~d~~~~EP~~lp~~~P~l 159 (800)
T TIGR01063 81 TLVRMAQDFSLRYPLVDGQGNFGSIDGDPPAAMRYTEARLTKIAEEL-LRDIDKETVDFVPNYDGSEQEPTVLPSRFPNL 159 (800)
T ss_pred HHHHHhhhccccceeeecCCCCCCCCCCchhhHHHHHhhhhHHHHHH-hhccCccccccccCCCCcccCccccccccchh
Confidence 99999999999999999999999999999999999999999999996 57999999999999999999999999999999
Q ss_pred eecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEE
Q 002290 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323 (941)
Q Consensus 244 LvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~ 323 (941)
|||||+||||||||+||||||.|||+||+++|++|++++++|++++|||||||||+|.+++|+.++|+||+|+|++||+|
T Consensus 160 LvNG~~GIa~G~at~ip~hn~~evi~~~~~~~~~~~~~~~~l~~~~~gpdfp~gg~i~~~~g~~~~y~~g~g~~~~~~~~ 239 (800)
T TIGR01063 160 LVNGSSGIAVGMATNIPPHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIRSAYETGRGSIVIRARA 239 (800)
T ss_pred eecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCCCccEEECccchhhhhccCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcc
Q 002290 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTA 403 (941)
Q Consensus 324 ~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~ 403 (941)
++|... .++++|+||||||++|+++|+++|+++++++++++|+|++|+||++|+||+|++|++++++.++++|||+|+
T Consensus 240 ~~~~~~--~~~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~k~~~~~~~~~~~l~k~t~ 317 (800)
T TIGR01063 240 EIEEDS--KGREAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLYKQTQ 317 (800)
T ss_pred EEEecc--CCCcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCCCceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 999764 356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHH
Q 002290 404 LQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483 (941)
Q Consensus 404 Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~ 483 (941)
||++|++||++|+++.|+++++++||++|++||+++|+||++|+|+++++|+|+++|+++++.++|++|++||++++.++
T Consensus 318 l~~~~~~n~~~~~~~~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~ 397 (800)
T TIGR01063 318 LQVSFGINMLALVKGLPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEE 397 (800)
T ss_pred cceeeeeeEEEEECCEeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCccc
Q 002290 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563 (941)
Q Consensus 484 a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT 563 (941)
|++.|++.|+|+++||+|||+|||++||++|++||++|+++|+++|++|+.+|+|+++++++|++||.++|++||+||||
T Consensus 398 ~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg~~RRT 477 (800)
T TIGR01063 398 AKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGDPRRT 477 (800)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCe
Q 002290 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643 (941)
Q Consensus 564 ~I~~~~~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~ 643 (941)
.|+.++..+++.+|+|++++++|++|++|||||+++++|..++++++|.+++++++||.+.+++.|+++|+|++||+.|+
T Consensus 478 ~I~~~~~~~i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Gr 557 (800)
T TIGR01063 478 EIVYDESEDIDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGK 557 (800)
T ss_pred eeecccccccchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCc
Confidence 99875434688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC
Q 002290 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723 (941)
Q Consensus 644 v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~ 723 (941)
+|++++++||.++|+++|.|+.++++|.++|+|+++++++++.++++++++|++||+||+++++|..+++.|..+++|++
T Consensus 558 v~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke 637 (800)
T TIGR01063 558 VYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD 637 (800)
T ss_pred EEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC
Confidence 99999999999999999999999999999999999999988878889999999999999999999998888999999999
Q ss_pred CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCC
Q 002290 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803 (941)
Q Consensus 724 gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~ 803 (941)
+|.|+++..|+++++++++|++|++++|++++||+++|.++|+++++|++||+|+++..+++
T Consensus 638 ~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~------------------ 699 (800)
T TIGR01063 638 GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSE------------------ 699 (800)
T ss_pred CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEecc------------------
Confidence 99999999999999999999999999999999999999999999999999999999988753
Q ss_pred CCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEec
Q 002290 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882 (941)
Q Consensus 804 ~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v 882 (941)
+.+++++|++|++||+++++|+..+|+++|+.++++++ +|+++++.++ +++++++++|++|+++||++
T Consensus 700 ---~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v--------~~~~~v~liT~~G~~lrf~~ 768 (800)
T TIGR01063 700 ---ESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAV--------DDDDELMLITSAGKLIRTSV 768 (800)
T ss_pred ---ccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEe--------cCCCeEEEEecCCeEEEeeH
Confidence 25799999999999999999999999999999999986 5899988876 34578999999999999999
Q ss_pred CccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 883 RDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 883 ~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
++||++||.++||++|+|.++|+|+++..++
T Consensus 769 ~eI~~~gR~a~GVk~i~L~~~D~vv~~~~i~ 799 (800)
T TIGR01063 769 QDVSEQGRNTQGVRLIRLDEDDKLVSVSKVA 799 (800)
T ss_pred hhCCccccCCCCeeeeeeCCCCEEEEEEEec
Confidence 9999999999999999999999999987764
No 3
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-202 Score=1782.98 Aligned_cols=791 Identities=48% Similarity=0.832 Sum_probs=759.6
Q ss_pred ceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHH
Q 002290 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYD 163 (941)
Q Consensus 84 i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~ 163 (941)
|.+++|+++|+++|++||||||++||||||||||||||||||||||++|++++++|+||||+||+||||||||||+|+||
T Consensus 8 i~~v~i~~e~~~syl~YAmsVIv~RALPdVRDGLKPVqRRILYaM~e~gl~~d~~~kKsAriVGdvmGkyHPHGDssiYd 87 (804)
T COG0188 8 IEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYKKSARIVGDVMGKYHPHGDSSIYD 87 (804)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhccCCccccCCccHHHHHHHHHHHcCCCCCCCchhhhhhHHhhcccCCCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccccee
Q 002290 164 SLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243 (941)
Q Consensus 164 aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~l 243 (941)
||||||||||+|||||||||||||+|||+|||||||||||||+|.+| +.|++++||+|+|||||++.||+|||++||||
T Consensus 88 alVRMAQdfs~RypLVdgqGNFGSiDgD~aAAMRYTEaRLs~ia~el-L~di~kdtVdf~~NyDg~~~EP~VLPa~~PnL 166 (804)
T COG0188 88 ALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAEEL-LEDIDKDTVDFVPNYDGSEKEPEVLPARFPNL 166 (804)
T ss_pred HHHHHhhhhhhcCcceecCCCCCCCCCChHHHHHHHHhhchHHHHHH-HhccccCeeecccCCCCCccCCccccccCCee
Confidence 99999999999999999999999999999999999999999999995 79999999999999999999999999999999
Q ss_pred eecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEE
Q 002290 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323 (941)
Q Consensus 244 LvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~ 323 (941)
|||||+|||||||||||||||.||++||+++|+||++++++||+++|||||||||+|.|.+|+.++|+||+|++++||+|
T Consensus 167 LvNGssGIAVGmATnIPPHNl~Evida~~~li~np~~~~~~lm~~i~GPDFPTgg~I~g~~~I~~aY~tGrG~i~vRa~~ 246 (804)
T COG0188 167 LVNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRGSIRVRAKA 246 (804)
T ss_pred EeccCCceecceecCCCCCCHHHHHHHHHHHHcCCCCchhhhhhccCCCCCCCcceEecchhhHHHHccCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcc
Q 002290 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTA 403 (941)
Q Consensus 324 ~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~ 403 (941)
++|... .++++|+||||||++||++++|+|++++.+|++.||+++|||||++|+||||++|+++.++.++|+|||+|+
T Consensus 247 ~iE~~~--~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk~~~~~~~vln~Lfk~T~ 324 (804)
T COG0188 247 EIEDTK--NGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLFKLTD 324 (804)
T ss_pred EEEecC--CCceEEEEEecCccccHHHHHHHHHHHHhcCCccCcccccccccCCCeEEEEEECCccchHHHHHHHHHhch
Confidence 999764 578999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred cceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHH
Q 002290 404 LQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483 (941)
Q Consensus 404 Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~ 483 (941)
||++|++||++|.+|+|+++++++||++|++||+++++||++|+|+|+++|+||++|+++|++++|+||++||+|++..+
T Consensus 325 LQ~~f~~nm~ai~~~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~ 404 (804)
T COG0188 325 LQTSFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPE 404 (804)
T ss_pred HHhhhCceeEEecCCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCccc
Q 002290 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563 (941)
Q Consensus 484 a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT 563 (941)
|++.|++.|++|+.||+|||+|+|++||.+|++++++|+++|.++|++|+.+|+|++++++++++||.+++++||++|||
T Consensus 405 a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~~~~~~i~~eL~~~~~k~gd~Rrt 484 (804)
T COG0188 405 AKEELMARFGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRT 484 (804)
T ss_pred HHHHHHHHcCCcHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCe
Q 002290 564 MLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGI 643 (941)
Q Consensus 564 ~I~~~~~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~ 643 (941)
+|......+++.+|+|++++++|++|+.||+||++.+.|..|+ .....++++|.+...+.|++||+++|||+.|+
T Consensus 485 ~i~~~~~~~~~~edli~~e~vvv~ls~~gyikr~~~~~~~~q~-----~~~~~~ke~d~~~~~~~~~t~d~ll~ft~~G~ 559 (804)
T COG0188 485 EIVEEEEDEIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQR-----VSGLGLKEGDFLERLFEANTHDTLLFFTSKGR 559 (804)
T ss_pred ecccccccccchhhhccccceEEEEcccceEEecchhhhhhhh-----hhhccccccchhhheeeecccceEEEEcCCCc
Confidence 9986543378889999999999999999999999999999885 45678999999999999999999999999999
Q ss_pred EEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC
Q 002290 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723 (941)
Q Consensus 644 v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~ 723 (941)
+|++++|++|+.+|++.|+|++++++++++|+|+.+.+++ ++.+++++|++|++||+++++|...+++|+.+++|++
T Consensus 560 ~y~~~~~~lp~~~~~~~G~~i~~ll~~~~~E~i~~v~~~~---~~~~l~~~T~~G~vK~~~l~~f~~~~~~g~~ai~L~~ 636 (804)
T COG0188 560 VYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITAVLPVN---DDQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKE 636 (804)
T ss_pred EEEecceeccccccccCChhhhhhccCCCCceEEEEEEcC---CceeEEEEecCCcEEEeehhhhhccccCCeeEEEcCC
Confidence 9999999999999999999999999999999999999987 6789999999999999999999999999999999999
Q ss_pred CCeEEEEEEec-CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCC
Q 002290 724 GDELKWVRCCT-NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNV 802 (941)
Q Consensus 724 gD~Lv~v~~~~-~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~ 802 (941)
+|.+.++..+. ..++++++|++|++++|+.+++|.+||.++||++|+|+++|.++++..+.+.
T Consensus 637 ~d~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~gr~a~Gv~~i~l~~~d~~~~~~~~~~~---------------- 700 (804)
T COG0188 637 GDELVSVSLTSDGDDDILLVTSNGKALRFPESEVREMGRGAKGVKGIKLKEGDKVVSLSVVEDD---------------- 700 (804)
T ss_pred CcceeeeeeccCCCceEEEEecCCeEEEeehhhcccccccccCcceeecCccCeeeeeeeccCC----------------
Confidence 99999998777 6889999999999999999999999999999999999999999999887652
Q ss_pred CCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCC--CcEEEEEEEeecccCCCCCCceEEEEecCCeEEEE
Q 002290 803 KGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAE--DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880 (941)
Q Consensus 803 ~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~--D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~ 880 (941)
..+++.+|++|++||+++++|+..+|+++|+..++..+. ..++++..+ .++++++++|+.|+++|+
T Consensus 701 ----~~~~l~~t~~g~~kr~~~~~~~~~~Rg~~G~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~t~~g~~ir~ 768 (804)
T COG0188 701 ----EAKLLTVTERGYGKRTKISEYPVTKRGGKGVILIKGTKRNRGKVVAAITV--------DEDDEIMLITSRGKLIRT 768 (804)
T ss_pred ----ceeEEEEeccCceeccchhhccccccCccceecccccccccceEEeeecc--------CCCceEEEEccCceEEEe
Confidence 126999999999999999999999999999999887643 556666554 356799999999999999
Q ss_pred ecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 881 KVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 881 ~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
++++|+.++|+++||+++++.+++.|+++....
T Consensus 769 ~~~~i~~~~r~t~gv~~~~~~~~~~v~~~~~~~ 801 (804)
T COG0188 769 AVSEISITGRNTQGVKLINLDEDEKVVSVARVK 801 (804)
T ss_pred eccccccccccccceEeeecCCCCeEEEEEecc
Confidence 999999999999999999999999999987664
No 4
>PRK05560 DNA gyrase subunit A; Validated
Probab=100.00 E-value=4.1e-200 Score=1810.46 Aligned_cols=800 Identities=51% Similarity=0.884 Sum_probs=773.6
Q ss_pred CCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhh
Q 002290 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNA 160 (941)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s 160 (941)
.++|++.+|+++|.++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|
T Consensus 2 ~~~i~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGlKPvqRril~~~~~~~~~~~~~~~K~a~~~G~v~~~YHpHGd~s 81 (805)
T PRK05560 2 GDRIIPVNIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMGKYHPHGDSA 81 (805)
T ss_pred CCceeEeeHHHHHHHHHHHHHHHHhhhccCCchhcCCCcchhHHHHHHHhhCCCCCCCceeehhhhhhHHhhcCCCchHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccc
Q 002290 161 VYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240 (941)
Q Consensus 161 ~y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~i 240 (941)
+|||||+|||+|+||+|||+|||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+++||+||||+|
T Consensus 82 ~~~a~v~maq~f~~~~pll~~~GnfGs~~g~~~Aa~RY~e~rl~~~~~~~-~~~~d~~~~~~~~n~d~~~~EP~~~p~~~ 160 (805)
T PRK05560 82 VYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARMSKIAHEL-LADIDKETVDFVPNYDGSEQEPTVLPARF 160 (805)
T ss_pred HHHHHHHHhhhccccceeEeCCCCCCCCCCCchhhhHHHHhhhhHHHHHH-HhhcCccccccccCCCCcccCcccccccC
Confidence 99999999999999999999999999999999999999999999999996 57999999999999999999999999999
Q ss_pred ceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEE
Q 002290 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320 (941)
Q Consensus 241 P~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~r 320 (941)
||||||||+||||||||+||||||.|||+|++++|++|++++++|++++|||||||||+|.+++|+.++|+||+|+|++|
T Consensus 161 P~~LvNG~~GIa~G~at~ip~hn~~evi~~~~~~l~~~~~~~~~l~~~~~gpdfptgg~i~~~~~~~~~~~~g~g~~~~~ 240 (805)
T PRK05560 161 PNLLVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMR 240 (805)
T ss_pred CeeeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCCCCCCccEEECccchhhheecCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHh
Q 002290 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYR 400 (941)
Q Consensus 321 g~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k 400 (941)
|+|+++.. .++++|+||||||++|+++|+++|+++++++++++|+|++|+||++|+||+|+++++++++.++++|||
T Consensus 241 ~~~~~~~~---~~~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~~~~~~~~~~~~~l~~ 317 (805)
T PRK05560 241 AKAEIEEI---KGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAVPEVVLNNLYK 317 (805)
T ss_pred EEEEEEec---CCCcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 99999854 356789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCC
Q 002290 401 LTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPS 480 (941)
Q Consensus 401 ~t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~ 480 (941)
+|+||++|++||++|+|++|+++++++||++|++||+++|+||++|+|+++++|+|+++|+++|+.++|+||++||++++
T Consensus 318 ~~~l~~~~~~n~~~~~~~~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~vI~iir~s~~ 397 (805)
T PRK05560 318 HTQLQTSFGINMLALVDGQPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPT 397 (805)
T ss_pred hcCCeeeeeeeEEEEECCEeEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 002290 481 NSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560 (941)
Q Consensus 481 ~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~ 560 (941)
.++|+++|++.|+|++.||+|||+|||++||++|++||++|+++|+++|++|+.+|+|+++++++|++||.++|++||+|
T Consensus 398 ~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~ 477 (805)
T PRK05560 398 PAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDP 477 (805)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEcc
Q 002290 561 RLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSD 640 (941)
Q Consensus 561 RRT~I~~~~~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~ 640 (941)
|||+|+++. .+++.+|+|++++++|++|++|||||+++++|..++++++|.+++++++||.+.+++.|+++|+|++||+
T Consensus 478 RRT~I~~~~-~~i~~edlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs 556 (805)
T PRK05560 478 RRTEIIEGE-GDIDDEDLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTN 556 (805)
T ss_pred CceEeeccc-cccchhhccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEec
Confidence 999998654 4678899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEe
Q 002290 641 RGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQ 720 (941)
Q Consensus 641 ~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ik 720 (941)
.|++|++++++||.++|+++|.|+.++++|.++|+|++++++++|.++++++++|++||+||+++++|..++++|..+++
T Consensus 557 ~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ik 636 (805)
T PRK05560 557 RGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAIN 636 (805)
T ss_pred CCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeec
Confidence 99999999999999999999999999999999999999999988878889999999999999999999998888999999
Q ss_pred cCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCC
Q 002290 721 LVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800 (941)
Q Consensus 721 Lk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~ 800 (941)
|+++|.++++..|++++.|+++|++|++++|++++||+++|.++|+++++|++||+|+++..+++.
T Consensus 637 Lke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~-------------- 702 (805)
T PRK05560 637 LDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVRED-------------- 702 (805)
T ss_pred cCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999887541
Q ss_pred CCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEE
Q 002290 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNR 879 (941)
Q Consensus 801 ~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR 879 (941)
+.+++++|++|++||+++++|+..+|+++|+.++++++ +|+++++.++ .++++++++|++|+++|
T Consensus 703 ------~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v--------~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 703 ------SQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPV--------DDDDEIMLITDSGKLIR 768 (805)
T ss_pred ------CcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEe--------cCCCeEEEEecCCeEEE
Confidence 24799999999999999999999999999999999986 6999998876 34578999999999999
Q ss_pred EecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 880 IKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 880 ~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
|++++||.+||.++||++|+|.+||+|+++..++
T Consensus 769 f~~~eI~~~gR~a~GVk~I~L~~~D~V~~~~~i~ 802 (805)
T PRK05560 769 TRVSEISITGRNTQGVRLIRLDEGDKVVSVARVA 802 (805)
T ss_pred EEHHHCCccccCCCCeeeEecCCCCEEEEEEEec
Confidence 9999999999999999999999999999998886
No 5
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=3.7e-194 Score=1735.37 Aligned_cols=732 Identities=36% Similarity=0.620 Sum_probs=703.4
Q ss_pred ceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHH
Q 002290 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYD 163 (941)
Q Consensus 84 i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~ 163 (941)
|++++|+++|+++|++||||||++|||||+|||||||||||||||+++|+.++++|+||||+||+|||+||||||+|+||
T Consensus 1 ~~~~~~~~~~~~~~l~ya~~vi~~RalP~~~DGlKPvqRril~~m~~~~~~~~~~~~K~A~~vG~v~g~YHpHGd~siy~ 80 (738)
T TIGR01061 1 IFNKPLEEVFGESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYHPHGDSSIYD 80 (738)
T ss_pred CcccCHHHHHHHHHHHhHHHHHhhccCCccccCCCchhhhhhHhHHhcCCCCCCCceeeeeehhhhhhccCCCchHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccccee
Q 002290 164 SLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243 (941)
Q Consensus 164 aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~l 243 (941)
|||||||+|+||||||||||||||+|||+|||||||||||+++|+.| +.|+|+++|+|+|||||+++||+||||+||||
T Consensus 81 a~v~maq~f~~~~pli~~~GnFGs~~gd~~Aa~RYte~rl~~~a~~~-~~~~d~~~v~~~~n~d~~~~EP~~lp~~~P~l 159 (738)
T TIGR01061 81 AMVRMSQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASEL-LKDIDKKTVSFIPNFDDSEKEPTVLPALFPNL 159 (738)
T ss_pred HHHHHhhhccccceeEeCCCCCCCCCCCcchhhHHHhhhhhHHHHHH-hhccCccccccccCCCCCccccccccccCCce
Confidence 99999999999999999999999999999999999999999999996 58999999999999999999999999999999
Q ss_pred eecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEE
Q 002290 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKT 323 (941)
Q Consensus 244 LvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~ 323 (941)
|||||+|||||||||||||||.|||+||+++|++|+++++||++++|||||||||+|.+.+|+.++|+||+|+|++||+|
T Consensus 160 LvNGs~GIavG~aT~Ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~~pdfptGg~i~~~~~i~~~y~tg~G~~~~rg~~ 239 (738)
T TIGR01061 160 LINGATGIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKGKFIIRAKI 239 (738)
T ss_pred eecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHhcccccCCCCCCCcEEECchhhHHheecCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcc
Q 002290 324 EVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTA 403 (941)
Q Consensus 324 ~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~ 403 (941)
++|... .++++|+||||||++|+++|+++|++++++++++||+|++||||++|+||+|++|++++++.++++|||+|+
T Consensus 240 ~~e~~~--~~~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~~~vrivi~lk~~~~~~~~~~~l~k~t~ 317 (738)
T TIGR01061 240 EIEVNK--NGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFLFKHTD 317 (738)
T ss_pred EEEEcC--CCCcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCCCceEEEEEECCCCCHHHHHHHHHHhcc
Confidence 998654 356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHH
Q 002290 404 LQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNST 483 (941)
Q Consensus 404 Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~ 483 (941)
||++|++||++|+++.|+++++++||++|++||+++|+||++|+|+++++|+||++|++++++++|++|++||++++.++
T Consensus 318 l~~~~~~n~~~~~~~~p~~~~l~~il~~~~~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~~id~~i~iir~~~~~~~ 397 (738)
T TIGR01061 318 LQINYNFNMVAIANRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSD 397 (738)
T ss_pred CcceeeeeEEEEECCcceECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCccc
Q 002290 484 ASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLS 563 (941)
Q Consensus 484 a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT 563 (941)
|++.|++.|+|+++||+|||+|+|++||++|+.||++|+++|+++|++|+.+|+|+.+++++|++||.+++++||+||||
T Consensus 398 ~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~RRT 477 (738)
T TIGR01061 398 AKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRS 477 (738)
T ss_pred HHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-CCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCC
Q 002290 564 MLEDAD-SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRG 642 (941)
Q Consensus 564 ~I~~~~-~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G 642 (941)
+|+.+. +.+++.+|+|++++++|++|++|||||+++++|..+++ .+++|++||++++++.|+++|+|+|||+.|
T Consensus 478 ~I~~~~~~~~~~~edli~~E~~lV~lTk~G~IKrt~l~~f~~~r~-----~ai~Lke~Delv~v~~~~~~d~IllfT~~G 552 (738)
T TIGR01061 478 QIEDFINQIKINESELIENEDYYVLITKAGYIKRTSNRSFASSKY-----TDFGSKDDDILFAQTIANTTDQILIFTSLG 552 (738)
T ss_pred eeecccccccCCHhhcccccceEEEEccCCEEEEeehhhhhhhcc-----cccCCCCCCEEEEEEEecCCCEEEEEeCCC
Confidence 997642 34688899999999999999999999999999998764 357799999999999999999999999999
Q ss_pred eEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccC-CCcEEEEEeccceEEEeecccccccc-cCceEEEe
Q 002290 643 IVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFA-GDQFLVMLTMNGYIKKVSLNLFSSIR-TTGIIAIQ 720 (941)
Q Consensus 643 ~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~-~~~~lllvT~~GyiKR~~l~~f~~~~-r~G~~~ik 720 (941)
++|+|++++||+++|+++|.|++++++|.++|+|+++.++.++. ++.+++++|++|++||+++++|..++ +.|+.+++
T Consensus 553 kv~r~~~~eIp~~gr~a~Gv~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~l~e~~~~r~~kGv~~ik 632 (738)
T TIGR01061 553 NIINIPVHKLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIELTELNIKRNSKATLCIK 632 (738)
T ss_pred cEEEEEHHHCcCCCCCCCCcChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeEHHHhccccCCCceEEEe
Confidence 99999999999999999999999999999999999999997653 33579999999999999999999885 55899999
Q ss_pred cCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCC
Q 002290 721 LVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHS 800 (941)
Q Consensus 721 Lk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~ 800 (941)
|+++|.++++..+.++++++++|++|+++||++++||.+||.++||++|+|+++|+|+++..+++
T Consensus 633 Lk~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~gR~a~GV~~I~L~~~D~Vv~~~~v~~--------------- 697 (738)
T TIGR01061 633 LKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFEA--------------- 697 (738)
T ss_pred ccCCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCcccccCCCeEEEEeCCCCEEEEEEEecC---------------
Confidence 99999999999998888999999999999999999999999999999999999999999887754
Q ss_pred CCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC
Q 002290 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844 (941)
Q Consensus 801 ~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~ 844 (941)
+..++++|++|++||+++++|+.++|+++|+..+++++
T Consensus 698 ------~~~ll~vTe~G~~Kr~~~~e~~~~~RggkGv~~~~l~~ 735 (738)
T TIGR01061 698 ------NESLVLLTQRGSVKRLSISELVVTSRAATGKKLLPLKK 735 (738)
T ss_pred ------CCeEEEEECCCceEEecHHHccccCCCCCCeEeeeccC
Confidence 24699999999999999999999999999999998764
No 6
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=100.00 E-value=1.4e-187 Score=1679.20 Aligned_cols=721 Identities=44% Similarity=0.732 Sum_probs=689.1
Q ss_pred CCCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChh
Q 002290 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDN 159 (941)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~ 159 (941)
..++|.+.+++++|+++|++||||||++|||||+|||||||||||||||+++|+.++++|+||||+||+|||+||||||+
T Consensus 6 ~~~~i~~~~~~~~~~~~~l~ya~~vi~~RalP~~~DGlKPvqRrily~m~~~~~~~~~~~~K~A~~vG~v~g~YHPHGd~ 85 (742)
T PRK05561 6 MLEGIEDLPLEEFLEERYLRYAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLGKYHPHGDS 85 (742)
T ss_pred ccccceEeeHHHHHHHHHHHHHHHHhhcccCCchhcCCCCchhhhhHhHHhcCCCcCCCceeehhhhhhHhhccCCCcHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccc
Q 002290 160 AVYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPAR 239 (941)
Q Consensus 160 s~y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~ 239 (941)
|+|||||||||+|+||||||||||||||+|||+|||||||||||+++|+.| +.|+|+++|+|+|||||+++||+||||+
T Consensus 86 siy~a~v~maQ~f~~~~pli~~~GnFGs~~g~~~Aa~RYte~rl~~~~~~l-~~~~d~~~v~~~~n~d~~~~EP~~lp~~ 164 (742)
T PRK05561 86 SIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSPIAELL-LEEIDEGTVDFVPNFDGTLKEPTVLPAR 164 (742)
T ss_pred HHHHHHHHHhhhccccccccccCCCCCCCCCCcHHHHHHHHHhhhHHHHHH-hhhcCccccccccCCCCcccCccccccc
Confidence 999999999999999999999999999999999999999999999999986 5899999999999999999999999999
Q ss_pred cceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCce-EEecchhhHhhhhcCCcEEE
Q 002290 240 LPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGG-LIMGNLGILDAYRTGRGRIT 318 (941)
Q Consensus 240 iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg-~i~~~~g~~~~y~tg~G~~~ 318 (941)
|||||||||+|||||||||||||||.|||+||+++|+||++++++|++++||||||||| +|.+.+|+.++|+||+|+|+
T Consensus 165 ~P~lLvNG~~GIavG~aT~ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~gpdFptGg~ii~~~~~i~~~y~tg~G~~~ 244 (742)
T PRK05561 165 FPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGIRKAYETGRGSIR 244 (742)
T ss_pred cchhhccCCcchhhhhhcCCCCCCHHHHHHHHHHHHhCCCCChHHHhhcccCCCCCCCcEEEeCchhHHHHhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999 77799999999999999999
Q ss_pred EEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCc-eEEEEEeCCC-CChHHHHH
Q 002290 319 VRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSG-MRIVIELKRG-ADPSIVVN 396 (941)
Q Consensus 319 ~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~g-irivi~lk~~-~~~~~~~~ 396 (941)
+||+|++++.. .++++|+||||||++|+++|+++|+++++++++++|+|++|+|+++| +||+|++|++ ++++.+++
T Consensus 245 ~r~~~~~~~~~--~~~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~s~~~~~~r~~i~~k~~~~~~~~~~~ 322 (742)
T PRK05561 245 VRARWEIEDLA--GGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENPVRIVIEPKSNRVDPEALMN 322 (742)
T ss_pred EEEEEEEEecC--CCCceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceeccCCCCCEEEEEEECCCcCCHHHHHH
Confidence 99999998653 35788999999999999999999999999999999999999999998 9999999999 99999999
Q ss_pred HHHhhcccceeeeeeEEEE-ECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHH
Q 002290 397 SLYRLTALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIV 475 (941)
Q Consensus 397 ~L~k~t~Lq~s~~~N~~~l-~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iI 475 (941)
+|||+|+||++|++||++| .+|+|+++++++||++|++||+++|+||++|+|+++++|+|+++|++++++++|+||++|
T Consensus 323 ~l~k~t~l~~~~~~n~~~~d~~~~p~~~~l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~ii 402 (742)
T PRK05561 323 HLFATTDLESSYRVNMNAIGLDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRII 402 (742)
T ss_pred HHHHhcCcceeeeeeEEEEccCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999 499999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 002290 476 REAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555 (941)
Q Consensus 476 r~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~ 555 (941)
|+|++ |+++|++.|+|++.||+|||+|||++||++|++||++|+++|+++|++|+.+|+|++.+|++|++||.++++
T Consensus 403 r~s~~---ak~~l~~~f~~~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~ 479 (742)
T PRK05561 403 RESDE---PKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAK 479 (742)
T ss_pred hcCcc---HHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99987 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccccccCC-CCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCce
Q 002290 556 RFSTPRLSMLEDAD-SGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDH 634 (941)
Q Consensus 556 kfg~~RRT~I~~~~-~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ 634 (941)
+||+||||+|..+. ..+++.+|+|++++++|++|++|||||+++++|..+ +++|++||++++++.|+++|+
T Consensus 480 kfg~~RRT~I~~~~~~~~i~~edlI~~e~~lVllTk~GyIKR~~l~~f~~~--------aikLke~D~Lv~v~~~~t~d~ 551 (742)
T PRK05561 480 KFGDPRRTPIEEAEEAIAIDEEALIPDEPVTVVLSKKGWVRRAKGHSIDAS--------GLSFKEGDSLLFAFEARTTDK 551 (742)
T ss_pred HhCCCCceeeeccccccccchhhcccCcceEEEEecCCEEEeccchhhhhh--------ccccCCCCeEEEEEEecCCCe
Confidence 99999999997653 246788999999999999999999999999999765 688999999999999999999
Q ss_pred EEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC
Q 002290 635 VLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714 (941)
Q Consensus 635 ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~ 714 (941)
|+|||+.|++|+|++++||+ +| +.|.|++++++|.+||+|+++..++ ++.+++++|++|++||+++++|..++|+
T Consensus 552 LllfT~~Grv~r~~~~eIP~-gr-a~Gv~i~~~i~L~~gE~Iv~~~~~~---~~~~lllvT~~G~~KRt~lse~~~~~R~ 626 (742)
T PRK05561 552 LLLFTSTGRVYSLPVHELPS-AR-GDGEPLTGLVDLAPGEEIVHVLAFD---PDQKLLLASSAGYGFVVTLEDLVARTRA 626 (742)
T ss_pred EEEEECCCcEEEeEHHhCCC-cC-CCCcChhhhcCCCCCceEEEEEEEc---CCcEEEEEECCCcEEEEEhhhccccCCC
Confidence 99999999999999999999 77 8899999999999999999999874 4557999999999999999999999999
Q ss_pred ceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEecccccccccC
Q 002290 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLER 793 (941)
Q Consensus 715 G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~~~~~~ 793 (941)
|..+++|+++|+|+++..+.++++++++|++|+++||++++||.+| .++||++|+|+ ++|.|+++..++.
T Consensus 627 gkg~i~Lk~~D~Lv~a~~v~~~d~I~liT~~G~~irf~~~eI~~~g-~a~GVk~i~L~~~~D~Vv~~~~v~~-------- 697 (742)
T PRK05561 627 GKAVINLKDGDEVLPPVPVEDDDHLAAITSNGRLLVFPLSELPELG-KGKGVKLINLPKDDDGLVDLRVLNP-------- 697 (742)
T ss_pred CeEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCCCcC-CCcCeEEEEecCCCCEEEEEEEEcC--------
Confidence 9999999999999999999888899999999999999999999999 99999999999 9999999988754
Q ss_pred CCCCCCCCCCCCCCCcEEEEec-CccEEEEeCCCccc--cCCCcceeEEEEc
Q 002290 794 TPEDSHSNVKGSSGPWLLFVSE-SGHGKRVPLSSFRK--LPLNRVGLIGYKF 842 (941)
Q Consensus 794 ~~~~~~~~~~~~~~~~lllvTe-~G~gKR~~lse~~~--~~R~~kGv~~ikl 842 (941)
++.++++|+ .|++|+ ++++|+. ++|+++|+..++.
T Consensus 698 -------------~~~ll~vt~G~g~~k~-~~~e~~~~~~~RggkG~~~~~~ 735 (742)
T PRK05561 698 -------------EDGLVLLTAGKRKLKL-KPSELEKYRGKRARRGRLLPRG 735 (742)
T ss_pred -------------CCeEEEEEecCCceec-CHHHcchhcCCCCCCCccCccc
Confidence 245779999 667777 9999999 9999999988753
No 7
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=4.4e-181 Score=1606.56 Aligned_cols=677 Identities=39% Similarity=0.637 Sum_probs=643.4
Q ss_pred ceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHH
Q 002290 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYD 163 (941)
Q Consensus 84 i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~ 163 (941)
|.+++|+++|+++|++||||||.+|||||++||||||||||||||+++|++++.+|+||||+||+|||+||||||+|+||
T Consensus 1 ~~~~~~~~~~~~~yl~ya~~vi~~RalP~v~DGLKPvqRrilyam~~~~l~~~~~~~K~Ar~vG~v~gkyHPHGd~s~y~ 80 (735)
T TIGR01062 1 IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSARTVGDVLGKYHPHGDSACYE 80 (735)
T ss_pred CccccHHHHHHHHHHHHHHHHhhcccCCchhcCCCcchhhhhHhHHhcCCCcCCCceeehhhHHHHHhhcCCCchHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeeeecCCCCCCCCC-CcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccce
Q 002290 164 SLVRMAQDFSLRYPLIRGHGNFGSIDA-DPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPT 242 (941)
Q Consensus 164 aiv~mAQ~f~~~~pLl~~~GnFGs~~g-d~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~ 242 (941)
|||+|||+|+||||||||||||||+|| ++|||||||||||+++|+.| +.|+|+++|+|+|||||+.+||+||||+|||
T Consensus 81 a~V~mAQ~fs~~~pLvdg~GnFGs~dg~~~~AAmRYte~rl~~~a~~l-l~~~d~~~v~~~~n~Dg~~~EP~~lp~~~P~ 159 (735)
T TIGR01062 81 AMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELL-LEELGQGTVDFRPNFDGTLLEPVILPARLPN 159 (735)
T ss_pred HHHHHhhhcccCceeEecCCCCCCCCCCChhHhHHHHHhhhHHHHHHH-hhccCccccccccCCCCCccCCcccccccch
Confidence 999999999999999999999999987 77899999999999999986 6899999999999999999999999999999
Q ss_pred eeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEec-chhhHhhhhcCCcEEEEEE
Q 002290 243 LLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG-NLGILDAYRTGRGRITVRG 321 (941)
Q Consensus 243 lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~-~~g~~~~y~tg~G~~~~rg 321 (941)
||||||+|||||||||||||||+|||+||+++|++|++++++|++++|||||||||+|.+ .+|+.++|+||+|+|++||
T Consensus 160 lLvNG~~GIavGmaT~IpphN~~ev~~a~~~~i~~~~~~~~~l~~~~~gPDfptgG~ii~~~~~i~~~y~tg~G~~~~r~ 239 (735)
T TIGR01062 160 ILLNGTTGIAVGMATDIPPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKAEEIRKIYETGRGSFRMRA 239 (735)
T ss_pred hhhcCCcceEeeeecCCCCCCHHHHHHHHHHHHhCCCCCHHHHhhhccCCCCCCCcEEecCchhHHHHhccCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999987 5899999999999999999
Q ss_pred EEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCC-CceEEEEEeC-CCCChHHHHHHHH
Q 002290 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELK-RGADPSIVVNSLY 399 (941)
Q Consensus 322 ~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~-~girivi~lk-~~~~~~~~~~~L~ 399 (941)
+|++|+ .+|+||||||++|+++|+|+|++++++|++++|+|++||||+ +|+||||++| ++.+++.++++||
T Consensus 240 ~~~~e~-------~~ivItelP~~v~~~~~~e~i~~~~~~kk~~~i~d~~Des~~~~~vr~vi~~k~~~~~~~~~~~~L~ 312 (735)
T TIGR01062 240 RWKKED-------GQIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVIVPRSNRVDPDIVMEHLF 312 (735)
T ss_pred EEEEEC-------CeEEEEeCCCcccHHHHHHHHHHHHhcCCCcceeehhhcCCCcCcEEEEEEECCCCCCHHHHHHHHH
Confidence 999984 269999999999999999999999999999999999999997 5999999998 7799999999999
Q ss_pred hhcccceeeeeeEEEE-ECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcC
Q 002290 400 RLTALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA 478 (941)
Q Consensus 400 k~t~Lq~s~~~N~~~l-~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s 478 (941)
|+|+||++|++||+++ +||+|+++++++||++|++||+++|+||++|+|+++++|+|||+|++++++|||+||++||+|
T Consensus 313 ~~t~L~~~~~~n~~~i~~~~~p~~~~l~~il~~~~~~R~~~~~rR~~~~l~k~~~rl~il~Gl~ia~~~iDevI~iIR~s 392 (735)
T TIGR01062 313 ATTDLEKSYRLNMNMIGLDNVPAVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREE 392 (735)
T ss_pred HhcCCeeeecccEEEEEeCCeeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Confidence 9999999999999999 799999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 479 PSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 479 ~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
+ ++++.|+++|+||+.||+|||+|+|++||++|..++++|+++|++++++|+.+|+|+++++++|++||.+++++||
T Consensus 393 ~---~~k~~L~~~f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g 469 (735)
T TIGR01062 393 D---EPKTILMERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYG 469 (735)
T ss_pred h---hhHHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 6 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCC-CCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEE
Q 002290 559 TPRLSMLEDADS-GQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLY 637 (941)
Q Consensus 559 ~~RRT~I~~~~~-~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~ 637 (941)
++|||.|+...+ ..++.+++|++|+++|++|++|||||+++++|.. +++++++||.+++++.|+++|+|+|
T Consensus 470 ~~RRt~i~~~~~~~~~~~~~~i~~e~v~VilTk~G~IKr~~~~~~~~--------saikLKegD~L~~~~~~~t~d~Lll 541 (735)
T TIGR01062 470 LARRSSLEEREEAKQVSEIDMIPKEPVTIILSKMGWVRSAKGHDIDL--------STLKYKAGDSEKAIIEGKSNQKVVF 541 (735)
T ss_pred CCCCeeeeccccccccchhhcccCcceEEEEecCCEEEeccccccch--------hccCcCCCCeEEEEEEecCCCEEEE
Confidence 999999976432 3688899999999999999999999999998853 4788999999999999999999999
Q ss_pred EccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceE
Q 002290 638 FSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII 717 (941)
Q Consensus 638 fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~ 717 (941)
||+.|++|+|++++||. +| +.|.|+...++|.+||+|+++.+++ ++++++++|++||+||+++++|..++|+|..
T Consensus 542 fTs~Gr~yrf~v~eIP~-GR-~aGgpV~~~L~L~~gE~Iv~~~~v~---~~~~lLlaT~~GyGKrt~lse~~~~~RaGKg 616 (735)
T TIGR01062 542 IDSTGRSYALDPDNLPS-AR-GQGEPLTGKLLLPIGATITNILMYS---PNQLLLMASDAGYGFLCNFNDLIARNKAGKA 616 (735)
T ss_pred EECCCeEEEEEhHhcCc-Cc-cCCceeEeeecCCCCCEEEEEEEec---CCcEEEEEEcCCcEEEEEhHhccccCcCCeE
Confidence 99999999999999985 66 6677988889999999999999985 4557999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEecCCC-eEEEEecCCcEEEEecccccccCCCCCCeeeeeCC------CCCeEEEEEEecc
Q 002290 718 AIQLVPGDELKWVRCCTNDD-LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK------DGDKMASMDIIPA 785 (941)
Q Consensus 718 ~ikLk~gD~Lv~v~~~~~~d-~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~------~gD~Ivsv~~~~~ 785 (941)
+++++++|.++.+..+.+++ .++++|++|++++|++++||.++| ++||++|+|+ .+|.++++.+++.
T Consensus 617 vi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR-gkGVkli~L~~~~~~~~~~~~~~~~~~~~ 690 (735)
T TIGR01062 617 LINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK-GKGNKLIRIPSANAKRGEDGLLDLKIFNK 690 (735)
T ss_pred EEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC-CCCeEEEEcCcccccCCCceEEEEEEEcC
Confidence 99999999999988887764 699999999999999999999999 9999999994 5678888877754
No 8
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=1e-143 Score=1259.87 Aligned_cols=603 Identities=27% Similarity=0.465 Sum_probs=534.8
Q ss_pred chhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHH
Q 002290 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVR 167 (941)
Q Consensus 88 ~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~ 167 (941)
+|+++|+++||+||||||++|||||++||||||||||||||+++ ++++|+||||+||+|| +||||||+|+|||||+
T Consensus 3 ~i~~~~~~~fl~YA~~VI~~RAlP~v~DGLKPvqRrIL~am~~~---~~~~~~K~A~ivG~v~-~YHPHGd~SiydalV~ 78 (635)
T PRK09631 3 DIKTLFKDNFLQYASYVIKDRAIPDVIDGLKPVQRRILHSLFEM---HDGKFHKVANVVGNTM-KYHPHGDASIYEALVN 78 (635)
T ss_pred cHHHHHHHHHHhhhHHhhhhccCCchhhCCCcchhhhhHhhhhc---cCCCceeeeeeccccc-ccCCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998 4789999999999999 9999999999999999
Q ss_pred hhhcccCceeeeecCCCCCCC-CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeec
Q 002290 168 MAQDFSLRYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLN 246 (941)
Q Consensus 168 mAQ~f~~~~pLl~~~GnFGs~-~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvN 246 (941)
|||+ +|||||||||||+ +||+||||||||||||++|+.||+ ++++|+|++||||+.+||+||||+|||||||
T Consensus 79 maq~----~~Lid~qGnFGs~l~Gd~aAA~RYte~rLs~~a~~~~~---~~~~v~~~~n~Dg~~~EP~~lp~~~P~lLvN 151 (635)
T PRK09631 79 LANK----DLFIDKQGNFGNLFTGDPASAARYIECRLTPLAKEVLY---NKEITEYEPSYDGRNNEPLCLPAKIPVILIQ 151 (635)
T ss_pred hcCC----cceeecCCCCCCCCCCChhhhHHHHHHhhhHHHHHHhc---CcCcccCCcCCCCCccCCccccccCceeeec
Confidence 9995 9999999999999 999999999999999999999875 4689999999999999999999999999999
Q ss_pred CCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEE
Q 002290 247 GASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326 (941)
Q Consensus 247 G~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie 326 (941)
||+|||||||||||||||.|||+|++++|+||+++ ++|||||||+|. .++|+||+|+|++||+++++
T Consensus 152 Ga~GIavG~aT~IpphN~~evi~a~~~~l~~~~~~--------~~PdFptGgii~-----~~~Y~tG~G~~~~r~~~~~~ 218 (635)
T PRK09631 152 GAEGIAVGMATKILPHNFNEILQAVKSELLGESFA--------LYPDFPTGGIVD-----VSEYADGNGKVLVRAKIETK 218 (635)
T ss_pred CCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCcc--------ccCCCCCCcEEE-----eeeeecCCceEEEEEEEEEe
Confidence 99999999999999999999999999999999875 489999999886 47899999999999999887
Q ss_pred EecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccce
Q 002290 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQS 406 (941)
Q Consensus 327 ~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~ 406 (941)
. .++|+||||||++|+++|+++|++++++|+++ |++++|+|++ ++||+|+|+++++++.++++|||+|+||+
T Consensus 219 ~------~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~-~v~i~i~l~~~~~~~~~~~~Lyk~t~lq~ 290 (635)
T PRK09631 219 D------EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAE-NVEIEIKLPRGVYASEVIEALYAYTDCEV 290 (635)
T ss_pred c------CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCC-cEEEEEEECCCCCHHHHHHHHHHhcCcee
Confidence 3 35799999999999999999999999999998 9999999986 69999999999999999999999999999
Q ss_pred eeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHhhcChHHHHHHHhcCCChHHH
Q 002290 407 SFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRH--IVEGIMVGLDNLDRVIRIVREAPSNSTA 484 (941)
Q Consensus 407 s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~--ilegli~~~~~iD~vI~iIr~s~~~~~a 484 (941)
+|++||++|+|++|+++++++||++|++||+++++||++|+|+++++|+| +|||++++ +++|++|++++.+++..++
T Consensus 291 s~~~n~~~i~~~~p~~~~l~~il~~~~~~r~~vl~rr~~~~l~k~~~r~h~~~legl~i~-~~i~~~i~~~~~~~~v~~~ 369 (635)
T PRK09631 291 SISVNLLVIKDRYPVIYTVTDIIKFHAEHLQKVLKMELELERAKLLEKIFAKTLEQIFIE-ERIYKRIETISSEEDVISI 369 (635)
T ss_pred EeeeeEEEEECCcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHhh-hhHHHHHHhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 79999998 7788888777777766666
Q ss_pred HHHHHHHh------CCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 485 SAALKDEF------KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 485 ~~~L~~~f------~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
..++++.| ++|++||+|||+|||+|||++|++|+++|+++|+++|++|+.+|+| +++++++||.+++++||
T Consensus 370 i~~~~~~~~~~l~~~~t~~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~L~~---~~~~~~~el~~l~~kyg 446 (635)
T PRK09631 370 VLSELKPFKEELSRDVTEEDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKNLKS---IKGYAINFIDKLLAKYS 446 (635)
T ss_pred HHhccchhhHhhhcCCCHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhC
Confidence 66666555 7999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred C--CcccccccCCCCCCCccccccCCceEEEEccC-ceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceE
Q 002290 559 T--PRLSMLEDADSGQLDDIDIIPNDEMLLAISEK-GYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHV 635 (941)
Q Consensus 559 ~--~RRT~I~~~~~~~~~~~dlI~~e~~lv~lT~~-GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~l 635 (941)
+ ||||+|...+ +++.++ |+++++.|++|+. |+ ....+++||. ++.|+++|+|
T Consensus 447 ~~~~RrT~i~~~~--~i~~~~-i~~~~vkV~id~~~G~-------------------iG~~~K~gD~---l~~~st~D~L 501 (635)
T PRK09631 447 KEYPRKTEISLIK--SVDVRE-IATKNLKVYYDLKTGF-------------------VGTSVKDGEF---IGNASYYDKI 501 (635)
T ss_pred CCCCCcceecCcC--ccCHHH-ccCCCeEEEEECCCCc-------------------ccCccCCCce---EEEEeCCCEE
Confidence 9 9999997643 566664 9999999999973 44 3345788887 7899999999
Q ss_pred EEEccCCeEEEEEecccCCcCccccCcccccccccCC-CCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC
Q 002290 636 LYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSD-GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT 714 (941)
Q Consensus 636 l~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~-~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~ 714 (941)
||||++|++ +++++|+.+|.++|.++++++++.+ +|+|.+++--+. + +..=|+||..+..|...+
T Consensus 502 LvFT~~Gk~---KV~~Ipe~~~~~kGi~i~~~l~k~d~~EkI~svIY~Dg---~------~~~~YiKRF~i~~~~~dK-- 567 (635)
T PRK09631 502 LVIRKDGTY---VVKNIPDKTFIDKKNVYVGVVDINNSKEQVFSIIYRDK---K------DNFYYVKRFKIDKFILDK-- 567 (635)
T ss_pred EEEeCCCcE---EEEECCccCcCCCCcChheeecCCCCCCeEEEEEEEeC---C------CCceEEEEEecccccccc--
Confidence 999999995 8999999999999999999999988 999999986541 1 233489999997764432
Q ss_pred ceEEEec-CCCCeEEEEEEecCCCeEEE-Eec-C---CcEEEEecccccccCCCCCCeeee
Q 002290 715 GIIAIQL-VPGDELKWVRCCTNDDLVAM-ASQ-N---GMVILSSCDIIRSLSRNTRGSVAM 769 (941)
Q Consensus 715 G~~~ikL-k~gD~Lv~v~~~~~~d~Ill-~T~-~---G~vir~~v~eI~~~gR~a~GV~li 769 (941)
...| .++-.|..+ .++....+-+ +.. . -...-++.+++...||.|+|.++-
T Consensus 568 ---ey~~~~e~~~l~~~-s~~~~~~i~v~~~~~~~~~~~~~~~d~~ef~VKG~~A~GnrlT 624 (635)
T PRK09631 568 ---VYRFLPEGTEILFL-STFEDFSLNLQFVPKPRQKDIVKMFRIDDFLVKGRSAIGKRIS 624 (635)
T ss_pred ---eeeccCCCceEEEE-ecCCCcEEEEEEccCCcccccceEEeHHHceeccccccceEec
Confidence 1122 333334322 2223333333 233 2 234457778898899999998874
No 9
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=1.7e-139 Score=1236.64 Aligned_cols=739 Identities=25% Similarity=0.431 Sum_probs=583.3
Q ss_pred eecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHH
Q 002290 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDS 164 (941)
Q Consensus 85 ~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~a 164 (941)
....|+++|+++||+||||||++|||||++||||||||||||+|++++ +++|+||||+||+|| +||||||+|+|||
T Consensus 19 ~~~~l~~~~~~~fLdYA~yVI~~RAiP~v~DGLKPvQRRIL~am~~~~---~~~~~KvA~ivG~v~-~YHPHGD~Siyda 94 (869)
T PRK12758 19 ALTHVSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKEMD---DGRYNKVANVVGHTM-QYHPHGDASIGDA 94 (869)
T ss_pred ccccHHHHHHHHHHhhhHhhhhcccCCchhcCCCcchhhhhHhhhhcC---CCCceeEeeeehhhh-ccCCCchHHHHHH
Confidence 356899999999999999999999999999999999999999999984 779999999999999 9999999999999
Q ss_pred HHHhhhcccCceeeeecCCCCCCC-CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccccee
Q 002290 165 LVRMAQDFSLRYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTL 243 (941)
Q Consensus 165 iv~mAQ~f~~~~pLl~~~GnFGs~-~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~l 243 (941)
||+|||+ +|||||||||||+ +||+||||||||||||++|+++++ ++++++|++||||+.+||+|||++||||
T Consensus 95 iV~MAQ~----~~Lid~qGNFGsi~~Gd~aAA~RYieaRLs~~a~~~l~---~~~~vd~~~nyDg~~~EP~~LP~k~P~l 167 (869)
T PRK12758 95 LVQLGQK----DLLIDTQGNWGNILTGDGAAAPRYIEARLSKFALEVVF---NPKTTEWQLSYDGRKKEPVTLPVKFPLL 167 (869)
T ss_pred HHHHhCc----CcEEeccCCCCCCCCCCcccchhhHhhhhhHHHHHHcC---CccccCCCcCCCCcccccccccCcCcee
Confidence 9999997 5799999999998 999999999999999999998653 5789999999999999999999999999
Q ss_pred eecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCC--cEEEEEE
Q 002290 244 LLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR--GRITVRG 321 (941)
Q Consensus 244 LvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~--G~~~~rg 321 (941)
|||||+||||||||+||||||.|||+|++++|+|++++ .+|||||||+|. .++|++|+ |+|++||
T Consensus 168 LvNGs~GIAvG~aT~IpPHN~~Evida~~~~l~~~~~~--------~~PDFpTGgii~-----~~~y~~G~~~G~i~vrg 234 (869)
T PRK12758 168 LAQGAEGIAVGLSTKILPHNFNELIDASIAYLKGKEFK--------LYPDFPTGGIID-----VSNYNDGERGGRVRVRA 234 (869)
T ss_pred eeccCcceeeccccCCCCCCHHHHHHHHHHHhcCCCCC--------CCCCCCCCcEEE-----eeecccCccceEEEEEE
Confidence 99999999999999999999999999999999999986 379999999886 36899999 9999999
Q ss_pred EEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhh
Q 002290 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRL 401 (941)
Q Consensus 322 ~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~ 401 (941)
+++. . ++++|+||||||++|+++|+++|+++++++++. |++++|+|+ +++||+|+|+++++++.++++||++
T Consensus 235 kie~--~----~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~-~~vrivI~lk~~~~~~~~~~~Ly~~ 306 (869)
T PRK12758 235 KIEK--L----DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTA-ADVEILVHLAPGVSPDKTIDALYAF 306 (869)
T ss_pred EEEE--c----CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCC-CceEEEEEeCCCCCHHHHHHHHHhh
Confidence 9753 2 357899999999999999999999999999999 999999998 5799999999999999999999999
Q ss_pred cccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHhhcChHHHHHHHhcCC
Q 002290 402 TALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHI--VEGIMVGLDNLDRVIRIVREAP 479 (941)
Q Consensus 402 t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~i--legli~~~~~iD~vI~iIr~s~ 479 (941)
|+||++|++||++|+|++|+++++++||++|++||+++++||++|+|+++++|+|+ |+|+++ .|+||++||+|+
T Consensus 307 T~lq~s~s~n~~vi~d~~P~~~~l~eiL~~~~~~r~~vl~rr~~~~l~k~~er~hi~~le~i~i----~d~Ii~~Ir~s~ 382 (869)
T PRK12758 307 TDCEVSISPNACVIIDNKPHFLGVSDILRRSTDHTVSLLKQELEIRLSELEEQWHFASLEKIFI----EERIYKEIEEAE 382 (869)
T ss_pred cCceeEeeeeEEEEECCeeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----hhHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999 788886 499999999999
Q ss_pred ChHHHHHHHHHHh---------CCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002290 480 SNSTASAALKDEF---------KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEV 550 (941)
Q Consensus 480 ~~~~a~~~L~~~f---------~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL 550 (941)
+.++|++.|++.| ++|++|+++||+|||+|||++|++|+++|+++|+++|++|+.+|+| +.+++++||
T Consensus 383 ~~~~a~~~l~~~~~p~~~~l~r~lte~qa~aIlemrL~rlt~le~~k~~~e~~~l~~~i~~~~~~L~~---l~~~ii~el 459 (869)
T PRK12758 383 TWEAVIEAIDKGLEPFKKQFIREVTEDDIVRLTEIKIKRISKFDSDKADELIARLEAEIAEVKHHLAH---LTDYAIAYF 459 (869)
T ss_pred CHHHHHHHHHHhcccchhhhcCCCCHHHHHHHHHhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 9999999999998 6999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHhCC--CcccccccCCCCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEE
Q 002290 551 IELKNRFST--PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV 628 (941)
Q Consensus 551 ~elk~kfg~--~RRT~I~~~~~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~ 628 (941)
.+++++||+ ||||+|...+ + |+.+++++. +.+|||||+ .|..+.+++++|.+ ..
T Consensus 460 ~~i~~kyg~~~~RrTeI~~~~--~------i~~~~v~~~-~~~~yi~r~------------~G~~g~~~k~~d~v---~~ 515 (869)
T PRK12758 460 TNLKKKYGKGRERKTEIRNFD--T------IEATKVVEA-NQKLYVNRE------------EGFIGTGLKKDEYV---AD 515 (869)
T ss_pred HHHHHHhCCCCCCcceecCcC--c------cccceEEEE-ecceEEEec------------cceecCcccCCceE---EE
Confidence 999999999 9999996533 1 334555555 999999986 24556778999854 69
Q ss_pred eeCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCe--EEEEEeccccCCCcEEEEEeccceEEEeecc
Q 002290 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGER--ITSIIPVSEFAGDQFLVMLTMNGYIKKVSLN 706 (941)
Q Consensus 629 ~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~--Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~ 706 (941)
|+++|+|+|||+.|++|++++ ..|+..|.+++....+.++++ |-.++--+ + -+..-|+||..+.
T Consensus 516 ~s~~d~ll~ft~~G~~~~~kv-----~~k~~~Gk~i~~~~~~~~~~~~~~~~~iy~d----~-----~~~~~~~krf~v~ 581 (869)
T PRK12758 516 CSDIDDVIVFRRDGKYMVTKV-----ADKTFVGKDIIHVAVFKKNDKRTIYNMIYRD----G-----KSGPSYIKRFNVT 581 (869)
T ss_pred ecCCCeEEEEecCCEEEEEEC-----CccccCCCcceEEeecCCCCcceEEEEEEEc----C-----CCCceEEEEeecc
Confidence 999999999999999999998 457788989998888876552 33333221 1 1333478999887
Q ss_pred cccccccCceEEEecCCCCeEEEEEEecCCC-eEE--EEecCC----cEEEEecccccccCCCCCCeeeee-------CC
Q 002290 707 LFSSIRTTGIIAIQLVPGDELKWVRCCTNDD-LVA--MASQNG----MVILSSCDIIRSLSRNTRGSVAMR-------LK 772 (941)
Q Consensus 707 ~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d-~Il--l~T~~G----~vir~~v~eI~~~gR~a~GV~li~-------L~ 772 (941)
.|...+- ....+-.+|.+++....-.+.+ +++ .+...+ ....+..+++...||.++|..+-+ |+
T Consensus 582 ~~~~dk~--y~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikg~~~~g~~~~~~~v~~i~~k 659 (869)
T PRK12758 582 GVTRDKE--YDLTQGTPGSKVLYFSANPNGEAEVVTVTLKPNGRIKKLKFDLDFSEIAIKGRGSKGNILTKYPVKKIELK 659 (869)
T ss_pred cEEecce--eeccCCCCCCEEEEEecCCCCceEEEEEEEecCCccceeEEeechhhhccccccccceEecccceeeEEee
Confidence 7644321 0011112344444332221111 111 122222 233456689999999999987632 32
Q ss_pred CCC--eEEEEEEecccccccccCCCCCCCCC--CCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcE
Q 002290 773 DGD--KMASMDIIPAALHKDLERTPEDSHSN--VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848 (941)
Q Consensus 773 ~gD--~Ivsv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~l 848 (941)
+.. .+-+..+.=+..+... ....+.+ ...+..+.|++++++|..+.+.+++= ..-++.+..+..-+.+.+
T Consensus 660 ~~g~stl~~rkIwfD~~vgRL---N~d~rgE~lgefs~~D~ILVi~kdG~ykvt~v~~k---~f~g~dii~iek~D~~ki 733 (869)
T PRK12758 660 EKGVSTLGGRKVWFDDDVGRL---NYDERGELLGEFKGDDKILVILQDGDYYTTNFELT---NHYEPNIIVLEKFDPEKP 733 (869)
T ss_pred ccCccccCCceEEECCccCcc---ccCCCceEEEecCCCceEEEEecCCeEEEEecccc---ceecCCeEEEEEcCCCce
Confidence 110 1111111000000000 0001111 22345678999999998888877652 222344444433344455
Q ss_pred EEEEEEe----------e---------cccCCCCCCceEEEEecC-------------C---eEEEEecCc-cccccccC
Q 002290 849 AAVFVVG----------F---------SLAEDGESDEQVVLVSQS-------------G---TVNRIKVRD-ISIQARYA 892 (941)
Q Consensus 849 v~~~~v~----------~---------~l~~~~~~~deIllvT~~-------------G---~~iR~~v~e-I~~~gR~a 892 (941)
.++...+ + .+..+ ..+..++++|.+ + ....+++++ |++.||.|
T Consensus 734 ys~IY~DG~~~~~YiKRF~iet~dKey~~i~~-~~~Skll~~S~~~~p~aevv~~~~~~~kk~~~eid~~eFI~VKG~kA 812 (869)
T PRK12758 734 WSAIYYDGEKKNYYVKRFLIENTDKKFNFISE-HPGSKLELLSTDYYPRIEIVFGKGDGKERPNLEIDLEEFIAVKGIKA 812 (869)
T ss_pred EEEEEECCCCCceEEEEEEEecCCcceecccC-CCCCEEEEEEcCCCceEEEEECcCCcccccceEEehhHceeeccccc
Confidence 5544321 0 01111 123344444332 1 122456778 79999999
Q ss_pred CceEEEEcCCCCeEEEEEEec
Q 002290 893 RGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 893 ~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
+|.++-+ ..|..+.+..
T Consensus 813 kGnrLTk----~~VkkI~l~e 829 (869)
T PRK12758 813 KGNRLTT----YKVKTINELE 829 (869)
T ss_pred cceEech----hhhhheeecC
Confidence 9998864 3355554444
No 10
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00 E-value=1.9e-140 Score=1202.16 Aligned_cols=441 Identities=56% Similarity=0.905 Sum_probs=431.2
Q ss_pred cccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCC
Q 002290 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNF 185 (941)
Q Consensus 106 ~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnF 185 (941)
++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|||||||||+||||+|||||||||
T Consensus 1 ~~RAiPdv~DGLKPvqRrILyam~~~~~~~~~~~~K~A~lvG~v~g~~hpHGd~Siy~aiV~MAQ~fs~n~pLldg~GnF 80 (445)
T cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80 (445)
T ss_pred CCCCCCchhcCCCchHHHHHHHHHHhCCCCCCCceeehhhhhhHhhccCCCchHHHHHHHHHHhhhccccceeEeCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCChH
Q 002290 186 GSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLG 265 (941)
Q Consensus 186 Gs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~~ 265 (941)
||||||+||||||||||||++|+.| +.|+|+++|+|++||||+++||+||||+|||||||||+||||||||+||||||.
T Consensus 81 GS~~Gd~aAA~RYte~rLs~~a~~l-~~d~d~~~v~~~~n~Dg~~~EP~~lp~~iP~lLvNGs~GIavG~aT~IPphN~~ 159 (445)
T cd00187 81 GSRDGDDAAAMRYTETRLSPIARLL-LPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLR 159 (445)
T ss_pred CCCCCCcccchHHHhhhhhHHHHHH-HhhcCccccccccCCCCCccCCccccccCCeeeeecCcceeeeeccCCCCCCHH
Confidence 9999999999999999999999987 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeecCC
Q 002290 266 ELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQ 345 (941)
Q Consensus 266 evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~ 345 (941)
|||+||+++|++++++++||++++|+|||||||+|.+.+|+.++|+||+|+|++||+|++++.. ++++|+||||||+
T Consensus 160 evi~a~~~~l~~~~~~~~~l~~~~~~Pdfptgg~I~~~~~~~~~y~tG~g~~~~rg~~~~~~~~---~~~~i~ItElP~~ 236 (445)
T cd00187 160 EVIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDE---GRNTIEITELPYQ 236 (445)
T ss_pred HHHHHHHHHhcCCCCCHHHHhcCCCCCCCCCCCEEecChhHHHHhhcCCceEEEEEEEEEEccC---CCceEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998532 5688999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEEE-CCcccccC
Q 002290 346 TNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGIL-DGQPKQMG 424 (941)
Q Consensus 346 ~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l~-~~~pk~~~ 424 (941)
+|+++|+++|+++++++++++|+||+|+||++|+||+|++|++.+++.++++|||+|+||++|++||++|+ +|+|+.+|
T Consensus 237 ~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~Nm~~~~~~g~p~~~~ 316 (445)
T cd00187 237 VNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDPNGRPKKLN 316 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeeeeEEEEecCCeeEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHh---CCCHHHHHH
Q 002290 425 LKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEF---KLSEKQADA 501 (941)
Q Consensus 425 l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f---~~s~~qaea 501 (941)
+++||++|++||+++|+||++|+|+++++|+|+++|+++|++++|+||++||+| ++|++.|++.| +|++.||+|
T Consensus 317 l~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id~vi~~ir~s---~~ak~~L~~~l~~~~~~~~qa~~ 393 (445)
T cd00187 317 LKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSS---DEAKKALIEELEKLGFSEIQADA 393 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 78999999999 999999999
Q ss_pred HHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 002290 502 ILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIEL 553 (941)
Q Consensus 502 IL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~el 553 (941)
||+|||++||+++++||++|+++++++|++|+.+|+|+++++++|++||.++
T Consensus 394 IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~~~ 445 (445)
T cd00187 394 ILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445 (445)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999874
No 11
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00 E-value=8.1e-134 Score=1153.22 Aligned_cols=438 Identities=55% Similarity=0.912 Sum_probs=423.9
Q ss_pred cchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHH
Q 002290 87 VELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLV 166 (941)
Q Consensus 87 ~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv 166 (941)
++++++|.++|+.||||||++|||||+|||||||||||||||+++|+.++++|+|||+++|+|+|+||||||+|+|||||
T Consensus 1 ~~~~~~~~~~~i~ya~~vi~~RaiP~v~DGLKPvqRrILyam~~~~~~~~~~~~k~a~~~g~~~~~YHpHGd~Siy~aiV 80 (445)
T smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDAIV 80 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCccccCCCchhhHHHHHHHHcCCCCCCceeEEEEEEEeeccCCCCCchHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCceeeeecCCCCCCC-CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeee
Q 002290 167 RMAQDFSLRYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLL 245 (941)
Q Consensus 167 ~mAQ~f~~~~pLl~~~GnFGs~-~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLv 245 (941)
||||+|+||+|||+|||||||| ||||||||||||||||++|+.| +.|+|+++|+|++||||+++||+||||+||||||
T Consensus 81 ~mAQ~f~~n~pLl~~~GnFGs~~~g~~aAA~RYte~rLs~~a~~l-~~~~d~~~v~~~~n~Dg~~~EP~~lp~~iP~lLv 159 (445)
T smart00434 81 RMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSPLAREL-LPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLV 159 (445)
T ss_pred HHhcccccccceEeCCCCCCCCCCCCcccchHHHHHhHHHHHHHH-HhhcCcccccCCcCCCccccCCccccccCCeeee
Confidence 9999999999999999999999 9999999999999999999987 5789999999999999999999999999999999
Q ss_pred cCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEE
Q 002290 246 NGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEV 325 (941)
Q Consensus 246 NG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~i 325 (941)
|||+||||||||+||||||.|||+||+++|++++++.+||+.+++||||||||++. |.++|++||++++
T Consensus 160 NGs~GIavG~aT~IpphN~~evi~~~~~~l~~~~~~~~~l~~~~~~pdF~~g~~~~-----------~~~~~~~rg~~~~ 228 (445)
T smart00434 160 NGSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII-----------GPGSYVVRGKIEI 228 (445)
T ss_pred ecCcceeeeeecCCCCCCHHHHHHHHHHHhCCCCCCHHHHhcCCcCCCCCCeeEEe-----------cCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999875 3459999999999
Q ss_pred EEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccC-CCCceEEEEEeCCCCChHHHHHHHHhhccc
Q 002290 326 ELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDES-DRSGMRIVIELKRGADPSIVVNSLYRLTAL 404 (941)
Q Consensus 326 e~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des-~~~girivi~lk~~~~~~~~~~~L~k~t~L 404 (941)
+. ++++|+||||||++|+++|+++|++++++|+++||.+++||| +++|+||+|+++++.+++.++++|||+|+|
T Consensus 229 ~~-----~~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~t~L 303 (445)
T smart00434 229 ED-----GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLTKL 303 (445)
T ss_pred Ec-----CCceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCCCceEEEEEECCCcCHHHHHHHHHHhcCC
Confidence 74 357899999999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred ceeeeeeEEEEE-CCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHhhcChHHHHHHHhcCCChH
Q 002290 405 QSSFSCNMVGIL-DGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVK-ERRHIVEGIMVGLDNLDRVIRIVREAPSNS 482 (941)
Q Consensus 405 q~s~~~N~~~l~-~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~-~r~~ilegli~~~~~iD~vI~iIr~s~~~~ 482 (941)
|++|++||++|+ ||+|+.+++.+||++|++||+++|+||++|+|++++ +|+|+++|++++..++|++|.+||++++..
T Consensus 304 q~s~~~n~~~l~~~g~p~~~~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~~r~~~~~~~fi~~~~~d~ii~~ir~~~~~~ 383 (445)
T smart00434 304 QSTFSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLA 383 (445)
T ss_pred eeeeceeEEEEecCCeeEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhhccchhH
Confidence 999999999999 999999999999999999999999999999999999 999999999999999999999999999864
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 002290 483 -TASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKN 541 (941)
Q Consensus 483 -~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~ 541 (941)
+|++.+++.|++++.||+|||+|||++||+++++||++|+++++++|++|+.+|+++..
T Consensus 384 ~~~~~~l~~~f~~~~~q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~l~~~~~ 443 (445)
T smart00434 384 KEAKELLMERFELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASELW 443 (445)
T ss_pred HHHHHhCCccCCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 89999999999999999999999999999999999999999999999999999998653
No 12
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=100.00 E-value=1.9e-124 Score=1064.58 Aligned_cols=430 Identities=26% Similarity=0.400 Sum_probs=397.7
Q ss_pred ceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhc-CcCCCChhhHH
Q 002290 84 IVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG-KFHPHGDNAVY 162 (941)
Q Consensus 84 i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g-~yHpHGd~s~y 162 (941)
..+++++++|.++|+.||||||++|||||+|||||||||||||||+++|+.++++|+||||+||+||| +|| |||+|+|
T Consensus 3 ~~~~~i~~~v~~~~i~ya~~vI~~RAiP~v~DGLKPvQRrILyam~~~~~~~~~~~~KvA~lvG~v~~~~YH-HGd~Sly 81 (439)
T PHA02592 3 LKERSLKSIVNNEALEYAMYTVEERAIPNLIDGLKPVQRFVIHRALEYAKGNKEKFDKVAAIAGGVADLGYH-HGETSAQ 81 (439)
T ss_pred ceeccHHHHHHHHHHHHHHHHhhcccCCccccCCCcchhhhhHhHHhhCCCCCCcchhhHHHHHHHhcccCC-CchHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999998 999 9999999
Q ss_pred HHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCc-CCCcccccccc
Q 002290 163 DSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQ-KEPSLLPARLP 241 (941)
Q Consensus 163 ~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~-~EP~~lp~~iP 241 (941)
||||+|||+||||+|||+||||||||+||||||||||||||+++|+.|| .|+| |++|||+.+ +||+||+|+||
T Consensus 82 ~tiV~MAQ~fsnn~pLl~~~GnFGs~~G~~aAA~RYte~rLs~~a~~l~-~d~D-----~~~n~dd~~~~eP~~y~P~iP 155 (439)
T PHA02592 82 DAGALMANTWNNNIPLLDGQGNFGSRLVQKAAAARYIFARVHDNFRKIY-KDED-----LAPVHEDPEHIPPAFYLPIIP 155 (439)
T ss_pred HHHHHHhhhhccceeeEecCCCCCCCCCCCccchhhhhcchhHHHHHHh-cccC-----CCcCCCCCcccCCcccccCCc
Confidence 9999999999999999999999999999999999999999999999975 5665 889998665 69999999999
Q ss_pred eeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCC-ceEEecchhhHhhhhcCCcEEEEE
Q 002290 242 TLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPT-GGLIMGNLGILDAYRTGRGRITVR 320 (941)
Q Consensus 242 ~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~Pdfpt-Gg~i~~~~g~~~~y~tg~G~~~~r 320 (941)
|||||||+||||||||+||||||.|||+||+++|++++++ .++||||+ +|.| ++||+|+|++|
T Consensus 156 ~lLvNG~~GIavG~sT~IPphN~~evi~~~~~~l~~~~~~-------~~~Pdfpg~~G~i---------~~tg~g~~~~r 219 (439)
T PHA02592 156 MVLLNGVSGIATGYATNILPHSPKSVIKAVLAALNGKDIT-------EPKVQFPEFKGEV---------VEIEPGSYEIR 219 (439)
T ss_pred hhhccCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCC-------CCCCcCCCCCCeE---------EEcCCceEEEE
Confidence 9999999999999999999999999999999999999987 38999996 4554 36999999999
Q ss_pred EEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHh
Q 002290 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYR 400 (941)
Q Consensus 321 g~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k 400 (941)
|+++++ ++++|+||||||++|+++|+++|++++++++|++|+| ||++|++|+|+++++++++.++++|||
T Consensus 220 g~~~~~------~~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~d----s~~~~v~i~I~lk~~~~~~~~~~~L~k 289 (439)
T PHA02592 220 GTYELN------GKTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDD----CTEDGFRFKVTLKREENEEATHEKIMK 289 (439)
T ss_pred EEEEEe------CCCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCccc----CCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 999986 3578999999999999999999999999999776665 889999999999999999999999999
Q ss_pred hcccceeeeeeEEEE-ECCccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcC
Q 002290 401 LTALQSSFSCNMVGI-LDGQPK-QMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREA 478 (941)
Q Consensus 401 ~t~Lq~s~~~N~~~l-~~~~pk-~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s 478 (941)
+|+||++|++||++| .||+|+ +.|+++||++|++||+++|+||++|+|+++++|+|++.+.+ ..||+||+.++.+
T Consensus 290 ~~~L~~~~~~Nm~~~d~~g~~~~~~~~~~Il~~f~~~R~~~~~kR~~~~l~k~~~r~~~l~~~~---~fI~~vi~~~~~~ 366 (439)
T PHA02592 290 DFGLIERVSQNITVINENGKLKVYENAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLALAKA---EFIKRVIAGEIVL 366 (439)
T ss_pred hcCchheeeeeEEEEecCCeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 999999999999999 589986 56999999999999999999999999999999999996654 4478889888876
Q ss_pred CC--hHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 002290 479 PS--NSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555 (941)
Q Consensus 479 ~~--~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~ 555 (941)
.+ .+++ .++++.|++++.||+|||+|||++||++++++|++|+++++++|++|+.. ...++|++||+++++
T Consensus 367 ~~~~~~~~-~~~l~~~~~~~~q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~-----t~~~~w~~DL~~~~~ 439 (439)
T PHA02592 367 QGKTRSEL-TEELSDNKDFGEYADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKKT-----TAKKEYIKDLEELKK 439 (439)
T ss_pred cCCCHHHH-HHHHHHcCCCHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhC
Confidence 43 3334 45678899999999999999999999999999999999999999999996 678999999999874
No 13
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=100.00 E-value=1.7e-125 Score=1086.93 Aligned_cols=425 Identities=49% Similarity=0.811 Sum_probs=388.7
Q ss_pred cCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCCCC
Q 002290 108 RALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFGS 187 (941)
Q Consensus 108 RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnFGs 187 (941)
|||||++||||||||||||+|+++ +.++++|+||||+||+|+|+||||||+|+|+|||+|||+|++|+|||+|||||||
T Consensus 1 RaiP~~~DGLKP~qRkil~~~~~~-~~~~~~~~Kva~l~G~v~~~YHpHGe~sl~~tiv~mAq~f~~n~pll~~~GnFGs 79 (426)
T PF00521_consen 1 RAIPSVRDGLKPVQRKILYAMFKL-RNPDKKEIKVAQLVGYVMGKYHPHGESSLYDTIVRMAQDFVGNYPLLDGQGNFGS 79 (426)
T ss_dssp HHS-BTTTS--HHHHHHHHHHHHC-CCTTSS-EEHHHHHHHHHHHTSTSSHHHHHHHHHHCTSTTTTSS-SEEEES-BSC
T ss_pred CCCCccccCCChHHHHHHHHHHHH-hhcccccceeeeehhhhHhhhCCCcchhhhhhhhhhhhccccccceeeCCCCccc
Confidence 899999999999999999999997 6778999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCChHH
Q 002290 188 I-DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266 (941)
Q Consensus 188 ~-~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~~e 266 (941)
| +|++||||||||||||++|+.|| .|+|+++|+|++||||+++||+||||+|||||||||+||||||||+||||||.|
T Consensus 80 ~~~g~~~Aa~RYi~~rls~~~~~l~-~~~d~~~l~~~~~~Dg~~~EP~~~~p~iP~vLvNG~~GIa~G~sT~Ip~hN~~e 158 (426)
T PF00521_consen 80 RLDGDKDAAMRYIETRLSKIARDLF-PDIDDDTLDYVPNYDGSEIEPEVYPPIIPMVLVNGASGIAVGMSTNIPPHNPRE 158 (426)
T ss_dssp TTTSCTBTTTTTCEEEE-HHHHHHC-TTTTTTCS-EEEETTSSSEEESS---SS-HHHHHTEEEESSSEEEEE--B-HHH
T ss_pred ccCCCCCCccceEEEechHhHHHHH-hhhcccccccCcCccccccchHHhhhcCcHHhccCCcchhhhhccCCCCCCHHH
Confidence 9 88888999999999999999975 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeecCCC
Q 002290 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQT 346 (941)
Q Consensus 267 vi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~ 346 (941)
||+||+++|+++++ +|+++.++|||||||.+.+..|+.+.|.+|+|+|++||+++++ + ++|+||||||++
T Consensus 159 vi~~~~~~l~~~~~---~l~~~~~~P~f~~~~g~i~~~~~~~~y~tg~G~~~~~~~~~~~------~-~~i~ITELP~~~ 228 (426)
T PF00521_consen 159 VIDAIIRLLDGEEI---ELMKYIMGPDFPTFGGIIEKNGIKNIYETGRGSIEVRGKYEIE------G-NTIVITELPYGV 228 (426)
T ss_dssp HHHHHHHHHHTTT----HHCTTSSSB--TTSCEEEECHHHHHHHHHSEEEEEEEEEEEEE------T-EEEEEEE--TT-
T ss_pred HHHHHHHHhCCCcc---cccccCCCCCCCCCCceeeccchhhhhccCcceEEEeeEEEEe------c-cEEEEEeCCccc
Confidence 99999999999998 8889999999999888889999999999999999999999987 3 789999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEEECCcccccCHH
Q 002290 347 NKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLK 426 (941)
Q Consensus 347 ~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l~~~~pk~~~l~ 426 (941)
|+++|+++|++++++|+++ |+||+|+|++ |++|+|+++++.+++.+++.|||+|+||++|++|+++|+|+.|+|+|++
T Consensus 229 ~t~~~~e~i~~l~~~~~i~-I~d~~D~Sd~-~v~ivI~lk~~~~~~~~~~~L~k~t~Lq~s~~~n~~~l~~~~p~~~~~~ 306 (426)
T PF00521_consen 229 WTEKYKEKIEELVEDKKIK-ISDYRDESDR-GVRIVIELKRGADPEKILEGLYKKTKLQSSISTNNMVLFDNGPKYDSLK 306 (426)
T ss_dssp -HHHHHHHHHHHHHTTSST-EEEEEE-BBT-BS-EEEEESTTSHHHHHHHHHHHHSTTEEEEEEETEEEETTEEEESSHH
T ss_pred cHHHHHHHHHHHhccCcch-hhHHHhcCCC-ceeEEEEecCCccHHHHHHHHHHHhhhhccccchheEEecCcceeCCHH
Confidence 9999999999999999999 9999999887 9999999999999999999999999999999999999998789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHHHHhcc
Q 002290 427 EVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMN 506 (941)
Q Consensus 427 eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~ 506 (941)
+||++|++||+++|+||++|+|+++++|+|+++|++++++++|.|+++|+++.+...+++.|++. +++.||+|||+||
T Consensus 307 eIL~~f~~~R~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~~~~~k~~L~~~--L~~~q~~yLL~m~ 384 (426)
T PF00521_consen 307 EILKEFYEFRLEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSIDKNKAKKDLIEE--LSEEQADYLLSMP 384 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHHHHH--HCHHHHHHHHTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccchHHHHHHHhh--chHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999998888899999999 8999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002290 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551 (941)
Q Consensus 507 L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~ 551 (941)
|++||+++++||++|++++++++++|+.++++ ++++|++||+
T Consensus 385 L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~---~~~l~~~dLd 426 (426)
T PF00521_consen 385 LRRLTKEEIEKLQKEIKELEKEIEELEKILPK---IKDLWKKDLD 426 (426)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 99999999999999999999999999999999 9999999985
No 14
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=4e-117 Score=984.70 Aligned_cols=449 Identities=26% Similarity=0.462 Sum_probs=406.9
Q ss_pred chhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHH
Q 002290 88 ELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVR 167 (941)
Q Consensus 88 ~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~ 167 (941)
+++++|+++||+||||||++|||||++||||||||||||+|+++| +++|+||||+||+||+ ||||||+|+|||||+
T Consensus 3 ~i~~~~~~~fl~YA~yVI~~RAIPdv~DGLKPVQRRILyam~~~~---~~~~~KvA~ivG~~m~-yhpHGDaSiydAlV~ 78 (479)
T PRK09630 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA-LHPHGDAPIVEALVV 78 (479)
T ss_pred cHHHHHHHHHHhhhHHHhhcccCCccccCCCCchhhhhhhhhhcC---CCCceeeeeehhcccc-cCCCchHHHHHHHHH
Confidence 588999999999999999999999999999999999999999997 6789999999999998 999999999999999
Q ss_pred hhhcccCceeeeecCCCCCCC-CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeec
Q 002290 168 MAQDFSLRYPLIRGHGNFGSI-DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLN 246 (941)
Q Consensus 168 mAQ~f~~~~pLl~~~GnFGs~-~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvN 246 (941)
|||+ +|||||||||||+ +||+||||||||||||++|+.++. ++++|+|++||||+.+||+||||+|||||||
T Consensus 79 MAQn----~~LId~qGNFGSrl~Gd~aAA~RYiEaRLs~~a~~il~---~~~~v~~~~nyDg~~~EP~~lP~~iP~LLvN 151 (479)
T PRK09630 79 LANK----GYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKEVLF---NTDLMTFHDSYDGREKEPDILPAKLPLLLLH 151 (479)
T ss_pred hccC----ceeeeCCCCCCCCCCCCcchhHHHHHHhhHHHHHHHhc---CcCcccccccCCCcccCCcccCCcCCeeccc
Confidence 9994 8999999999996 899999999999999999999743 4579999999999999999999999999999
Q ss_pred CCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEE
Q 002290 247 GASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVE 326 (941)
Q Consensus 247 G~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie 326 (941)
||+||||||||+||||||.|||+|++++|+|++++ ++|||||||+|.. ++|++|+|+|++||+++++
T Consensus 152 Ga~GIAvG~AT~IpPHNl~Evida~i~~L~~~~~~--------~~PDFptGG~I~~-----~~Y~tG~G~~~vrgk~~~~ 218 (479)
T PRK09630 152 GVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFT--------LLPDFPSGGTMDA-----SEYQDGLGSITLRASIDII 218 (479)
T ss_pred CCceeeeccccCCCCCCHHHHHHHHHHHhCCCCCc--------CCcCCCCCcEEEE-----eecccCCceEEEEEEEEEe
Confidence 99999999999999999999999999999999975 5899999999874 6899999999999999886
Q ss_pred EecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccce
Q 002290 327 LLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQS 406 (941)
Q Consensus 327 ~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~ 406 (941)
+ .++|+||||||++|+++|+++|++++++|++. |++|+|+|++ +++|+|+|+++++++.++++||++|+||+
T Consensus 219 ~------~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~-~v~i~I~Lk~~~~~~~vl~~Ly~~T~lq~ 290 (479)
T PRK09630 219 N------DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTD-LPHIEIKLPKGIYAKDLLRPLFTHTECQV 290 (479)
T ss_pred c------CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCC-CceEEEEECCCCCHHHHHHHHHhhCchhh
Confidence 3 24799999999999999999999999999998 9999999986 69999999999999999999999999999
Q ss_pred eeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC-----hHHHHHHHhcCCCh
Q 002290 407 SFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDN-----LDRVIRIVREAPSN 481 (941)
Q Consensus 407 s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~-----iD~vI~iIr~s~~~ 481 (941)
+|++||++|.||+|+++++++||+.+.++....++++.+.++.++++++|...-.-+++.+ +.+.+.-|.++.+.
T Consensus 291 s~~~n~~~i~~~~P~~~~l~~il~~~~~~~~~~l~~eLe~~~~~l~~~~~~~sle~ifie~riy~~~~~~~~~~e~~~~~ 370 (479)
T PRK09630 291 ILTSRPTAIYQNKPVETSISEILRLHTETLQGYLKKELLILEDSLSREHYHKTLEYIFIKHKLYDTVREMLSKRKTSPSS 370 (479)
T ss_pred hccceEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCH
Confidence 9999999999999999999999999999999999999999999999998854333333321 22233334566666
Q ss_pred HHHHHHHHHHh---------CCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002290 482 STASAALKDEF---------KLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552 (941)
Q Consensus 482 ~~a~~~L~~~f---------~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~e 552 (941)
+++.+.+-+.+ ..++++...|+++|++|+++.+++|-++++..++++|++.+..|+ .+.++-+.-++.
T Consensus 371 ~~~~~~i~~~l~p~~~~~~r~v~~~d~~~l~~i~i~ri~~fd~~k~~~~~~~~~~~~~~~~~~l~---~~~~~~i~~~~~ 447 (479)
T PRK09630 371 SDLHNAVLEALTPFLDTLPTPVDKQATAQLASLTIKKILCFNENSYTKELACIEKKQAAVQKDLS---QLKKYTVKYLKG 447 (479)
T ss_pred HHHHHHHHHhcCcchhhccCCCCHHHHHHHhhhhHHHhhhcCHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66665555543 257899999999999999999999999999999999999999888 578999999999
Q ss_pred HHHHhCC--CcccccccCCCC
Q 002290 553 LKNRFST--PRLSMLEDADSG 571 (941)
Q Consensus 553 lk~kfg~--~RRT~I~~~~~~ 571 (941)
|++|||. +|||+|...+.+
T Consensus 448 l~~kyg~~~~r~t~i~~f~~~ 468 (479)
T PRK09630 448 LLETYGQLGHRKTQIAKFKAK 468 (479)
T ss_pred HHHHhcCCCCccceeeccccc
Confidence 9999985 799999765533
No 15
>PLN03128 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=1.8e-110 Score=1032.81 Aligned_cols=441 Identities=22% Similarity=0.360 Sum_probs=404.7
Q ss_pred CceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhh--cCcCCCChhh
Q 002290 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL--GKFHPHGDNA 160 (941)
Q Consensus 83 ~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~--g~yHpHGd~s 160 (941)
..-.++++++|.++|+.|||| +++|||||+|||||||||||||+|+++|++++ +||||+||+|+ ++|| |||+|
T Consensus 649 ~~~~i~~~dfi~~eli~fs~~-~~~RaiP~v~DGLKPvQRkILy~~~~~~~~~~---~Kva~l~G~V~e~~~YH-HGd~S 723 (1135)
T PLN03128 649 TGNGISYSDFINKELILFSQA-DLARSIPSMVDGLKPSQRKVLFACFKRNLKSE---IKVAQLSGYVAEHSAYH-HGEAS 723 (1135)
T ss_pred CCccccHHHHHHHHHHHHHHH-HhcCCCCchhcCCCchhhHHHHHHHhcCCCcc---chHHHHHHHHhhccCCC-CChHH
Confidence 445799999999999999999 78999999999999999999999999998766 79999999999 6999 99999
Q ss_pred HHHHHHHhhhcc--cCceeeeecCCCCCCC--CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccc
Q 002290 161 VYDSLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLL 236 (941)
Q Consensus 161 ~y~aiv~mAQ~f--~~~~pLl~~~GnFGs~--~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~l 236 (941)
+|+|||+||||| |||+|||+|||||||| ||||||||||||||||++|+.|| .|+|+.+++|+ ||||+.+||+||
T Consensus 724 l~~tiV~mAQ~f~Gsnn~~Ll~~~GnFGSr~~~G~~aAa~RYi~~rLs~ia~~lf-~~~dd~~l~y~-~~Dg~~~EP~~~ 801 (1135)
T PLN03128 724 LASTIIGMAQDFVGSNNINLLTPSGQFGTRLQGGKDAASARYIFTRLSPITRALF-PKDDDVLLNYL-NEDGQSIEPEWY 801 (1135)
T ss_pred HHHHHHHHhhhccccccceeeccCCCCCCCCCCCChhhhhhHHhhhhhHHHHHHh-ccccccccCCc-CCCccccCCcee
Confidence 999999999999 8999999999999994 89999999999999999999975 67799999998 999999999999
Q ss_pred ccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcE
Q 002290 237 PARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGR 316 (941)
Q Consensus 237 p~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~ 316 (941)
||+|||||||||+||||||||+||||||.|||+|++++|++++ +++|++.++|| ||+++. +|+||+|+
T Consensus 802 ~p~iP~lLvNGs~GIa~G~aT~IPphN~~evi~~~~~~i~~~~--~~~l~p~~~g~---~G~i~~-------~~~tg~g~ 869 (1135)
T PLN03128 802 CPIIPMVLVNGSEGIGTGWSTFIPNYNPRDIIANIRRLLRGEE--LEPMHPWYRGF---KGTITE-------VSTSRSGS 869 (1135)
T ss_pred cccchhhhccCCcccccccccCCCCCCHHHHHHHHHHHHcCCC--HHHHHhhccCC---CceEEE-------ccccCCce
Confidence 9999999999999999999999999999999999999999997 46676666654 887653 68899999
Q ss_pred EEEEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHH--hcCCCCccccccccCCCCceEEEEEeCCCCChHHH
Q 002290 317 ITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELV--ENKTLDGISDIRDESDRSGMRIVIELKRGADPSIV 394 (941)
Q Consensus 317 ~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv--~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~ 394 (941)
|++||++++. ++++|+||||||++|+++|++.|.+++ .++++++|+||+|+||++|+||+|+|+++.+++.+
T Consensus 870 ~~~~g~~~~~------~~~~i~ItElP~~~~~~~y~~~l~~l~~~~~k~~~~I~d~~d~s~~~~v~~~i~l~~~~~~~~~ 943 (1135)
T PLN03128 870 YTVTGIIEQI------GDTTIRITELPVRKWTQDYKEFLEALLTGTKKKEPEIKDFKENHTDTTVHFTVTLSEEKMARAL 943 (1135)
T ss_pred EEEEEEEEEe------cCcEEEEEecCCccchHHHHHHHHHHHhhhccCCcceeeeeeccCCCceEEEEEECcchhHHHH
Confidence 9999999884 257899999999999999888888776 45789999999999999999999999999999999
Q ss_pred HHHHHhhcccceeeeeeEEEEECCc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHhhcCh
Q 002290 395 VNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVE---GIMVGLDNL 468 (941)
Q Consensus 395 ~~~L~k~t~Lq~s~~~N~~~l~~~~---pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ile---gli~~~~~i 468 (941)
+++|||+|+||++|++||++++|+. ++|.++++||++|++||+++|+||++|+|++++.++|+++ +++.++.+.
T Consensus 944 ~~~l~k~~~L~~~~~~~nm~l~d~~~~i~ky~~~~~il~~f~~~R~~~y~kRk~~~l~~~~~~~~~l~~k~~fi~~v~~~ 1023 (1135)
T PLN03128 944 AEGLEKKFKLSTTISTSNMHLFDKDGKIKKYDSPEDILEEFFHLRLDLYVKRKEVLLENLEYELKKLDNKARFILAVVKG 1023 (1135)
T ss_pred HHHHHhhcceehhcCceEEEEECCCCcccCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHhheecc
Confidence 9999999999999999888888654 4678999999999999999999999999999999999999 777777777
Q ss_pred HHHHHHHhcCCChHHHHHHHHHH-hC---CCHHH---------------------------HHHHHhccHHHhhHHHHHH
Q 002290 469 DRVIRIVREAPSNSTASAALKDE-FK---LSEKQ---------------------------ADAILDMNLRRLTMLERKK 517 (941)
Q Consensus 469 D~vI~iIr~s~~~~~a~~~L~~~-f~---~s~~q---------------------------aeaIL~M~L~rLT~le~~k 517 (941)
|.+| ++++++++.+.|++. |. +++.| |+|||+|||++||.++++|
T Consensus 1024 ~~~i----~~~~k~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yLL~M~l~~LT~e~~~k 1099 (1135)
T PLN03128 1024 EIVV----NNRKRAELLAELEEKGFDKFPKTAKISETNVVGDRDGEASEEEEASDNELAKSYDYLLGMPISSLTLEKVDE 1099 (1135)
T ss_pred eEEE----cCCCHHHHHHHHHHcCCCCcchhhhhccccccccccccccchhhhcccccccchHHHHhCHHHHhhHHHHHH
Confidence 7766 678889999999987 65 55554 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 002290 518 FVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557 (941)
Q Consensus 518 L~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kf 557 (941)
|++|+++++++|++|+.+ ...++|.++|+++.+.+
T Consensus 1100 L~~e~~~~~~ei~~l~~~-----t~~~~w~~DLd~~~~~~ 1134 (1135)
T PLN03128 1100 LRAERAKKETEVEELKKT-----TPEDLWRKDLDAFEEAL 1134 (1135)
T ss_pred HHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhh
Confidence 999999999999999998 56689999999998875
No 16
>PLN03237 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=8.8e-108 Score=1008.22 Aligned_cols=443 Identities=23% Similarity=0.326 Sum_probs=390.2
Q ss_pred CceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhh--cCcCCCChhh
Q 002290 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL--GKFHPHGDNA 160 (941)
Q Consensus 83 ~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~--g~yHpHGd~s 160 (941)
..-.++++++|.++|+.||||+| .|||||+|||||||||||||+||++|+.++ +|||||||+|| ++|| |||+|
T Consensus 674 ~~~~i~~~dfinkeli~ySm~~i-~RAIP~v~DGLKPvQRkILya~~k~~~~~~---~KvAqlvG~V~e~~~YH-HGd~S 748 (1465)
T PLN03237 674 TQKDVKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFVKE---AKVAQLSGYVSEHSAYH-HGEQS 748 (1465)
T ss_pred CCCcccHHHHHHHHHHHHHHHHH-hccCCchhcCCCchHhHHHHHHHhcCCccc---cchhhhHHHHhhhccCC-CcHHH
Confidence 44579999999999999999999 799999999999999999999999998765 79999999999 8999 99999
Q ss_pred HHHHHHHhhhcc--cCceeeeecCCCCCC--CCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccc
Q 002290 161 VYDSLVRMAQDF--SLRYPLIRGHGNFGS--IDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLL 236 (941)
Q Consensus 161 ~y~aiv~mAQ~f--~~~~pLl~~~GnFGs--~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~l 236 (941)
||+|||+|||+| |||+|||+||||||| +|||||||||||||||+++++.|| .++|+++|+| +||||+++||+||
T Consensus 749 ly~tiV~MAQdfvGsnnipLl~p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf-~~~Dd~~l~~-~n~Dg~~iEP~~y 826 (1465)
T PLN03237 749 LASTIIGMAQDFVGSNNINLLLPNGQFGTRLQGGKDHASARYIFTRLSPITRFLF-PKDDDILLDY-LNEDGQSIEPTWY 826 (1465)
T ss_pred HHHHHHHHhhccccccccceeecCCCCCCCCCCCCcccccccceechhHHHHHHh-ccCCccccCc-cCCCCcccCCcee
Confidence 999999999999 899999999999999 499999999999999999999975 7889999999 5999999999999
Q ss_pred ccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchh-hHhhhhc-CC
Q 002290 237 PARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLG-ILDAYRT-GR 314 (941)
Q Consensus 237 p~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g-~~~~y~t-g~ 314 (941)
||+|||||||||+||||||||+||||||+|||++|+++|+++++ .|+||| +.|++| +.+.|.| |+
T Consensus 827 ~piiP~lLVNGa~GIatG~sT~IPphNp~eVi~~i~~~i~~e~~----------~~~~P~---~~gf~G~I~~~~~t~g~ 893 (1465)
T PLN03237 827 MPIIPTVLVNGAEGIGTGWSTFIPNYNPRDIVANIRRLLNGESM----------EPMHPW---YRGFKGTIEKTASKEGG 893 (1465)
T ss_pred cCCCcceeecCCcceecccccCCCCCCHHHHHHHHHHHhcCCCc----------CCCCCe---ecCCCceEeEhhhcCCC
Confidence 99999999999999999999999999999999999999999764 378998 688888 7788877 99
Q ss_pred cEEEEEEEEEEEEecCCCCcceEEEEeecCCCCHHH---HHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCCh
Q 002290 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSM---LVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADP 391 (941)
Q Consensus 315 G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~---~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~ 391 (941)
|+|++||+++++. +++|+||||||++|+++ ++++|.++++++++++|+||+|+|+++||||+|+|+++.++
T Consensus 894 g~~~~rG~~~~~~------~~~i~ITElP~~~~t~~y~~~le~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~ 967 (1465)
T PLN03237 894 CTYTITGLYEEVD------ETTLRITELPIRRWTDDYKEFLESLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENML 967 (1465)
T ss_pred ceEEEEEEEEEec------CCeEEEEeCCCeecchHHHHHHHHHHHHHhccCcCceeechhccCCceEEEEEEeccchhH
Confidence 9999999998863 46899999999999854 56677777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhcccceeeeeeEEEEEC--C-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C
Q 002290 392 SIVVNSLYRLTALQSSFSCNMVGILD--G-QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD-N 467 (941)
Q Consensus 392 ~~~~~~L~k~t~Lq~s~~~N~~~l~~--~-~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~-~ 467 (941)
+.++++|||+|+||++|++|+++++| | .|+|+++++||++|++||+++|++|+++.+.+++.++..++..+.++. .
T Consensus 968 ~~~~~~L~k~~kL~~s~~~~nm~l~d~~G~i~k~~~~~~Il~~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~v 1047 (1465)
T PLN03237 968 AAKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAV 1047 (1465)
T ss_pred HHHHHHHHHhhcCcceeceeEEEEEcCCCCcceeCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985555553 4 499999999999999999999999999999999998888887777643 1
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHH-hC-C---------------------------------CHHHHHHHHhccHHHhhH
Q 002290 468 LDRVIRIVREAPSNSTASAALKDE-FK-L---------------------------------SEKQADAILDMNLRRLTM 512 (941)
Q Consensus 468 iD~vI~iIr~s~~~~~a~~~L~~~-f~-~---------------------------------s~~qaeaIL~M~L~rLT~ 512 (941)
++..|. -+.+.+++..+.|.+. |. + ....|+|||+||||+||.
T Consensus 1048 i~g~i~--i~~k~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~ 1125 (1465)
T PLN03237 1048 VDGEII--VNNRKKADLVEELRQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTL 1125 (1465)
T ss_pred hcCceE--EccCCHHHHHHHHHHcCCCccchhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCH
Confidence 222221 1344555556666553 20 0 002599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
+++++|.+|++++++|++.|+.. ...++|.++|+++.+.|-
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~-----t~~~lW~~DLd~f~~~~~ 1166 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKT-----TPKSLWLKDLDALEKELD 1166 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 555788888888877764
No 17
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=100.00 E-value=2.9e-106 Score=1000.75 Aligned_cols=440 Identities=23% Similarity=0.316 Sum_probs=396.4
Q ss_pred CceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhh--cCcCCCChhh
Q 002290 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVL--GKFHPHGDNA 160 (941)
Q Consensus 83 ~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~--g~yHpHGd~s 160 (941)
..-.+.+.+++.+..+.|||+.+ .|||||++||||||||||||+||++|+.+ +.||||+||+|+ ++|| |||+|
T Consensus 656 ~~~~i~~~dFvnkEli~FS~~d~-~RaIP~v~DGLKP~QRkILy~~~k~nl~~---~~KvAql~G~V~e~~~YH-HGe~S 730 (1388)
T PTZ00108 656 SKKKLTYSDFVNKELILFSIADN-ERSIPSLVDGLKPGQRKILFACFKRNLKN---EIKVAQLSGYVSEHSAYH-HGEQS 730 (1388)
T ss_pred cCceecHHHhhhHHHHHHhhhhc-ccCCCccccCCCchhhHHHHHHHHcCCCc---cchHHHHHHHHHhhccCC-CChhH
Confidence 34578999999999999999975 99999999999999999999999999764 579999999999 6899 99999
Q ss_pred HHHHHHHhhhcc--cCceeeeecCCCCCCC--CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccc
Q 002290 161 VYDSLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLL 236 (941)
Q Consensus 161 ~y~aiv~mAQ~f--~~~~pLl~~~GnFGs~--~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~l 236 (941)
||+|||+|||+| |||+|||+|||||||| ||+|||||||||||||++|+.|| .++|+++|+|+ ||||+.+||+||
T Consensus 731 l~~tiV~MAQ~fvGsnni~Ll~p~GnFGsr~~gG~daAA~RYi~trLs~~ar~lf-~~~Dd~~l~y~-~~Dg~~~EP~~y 808 (1388)
T PTZ00108 731 LQQTIVGMAQNFVGSNNINLLYPCGQFGSRLQGGKDHAAARYIFTKLSKITRYIF-PEEDDPILDYL-EDDGQSVEPFYY 808 (1388)
T ss_pred HHHHHHHHhcccchhccceeEecCCCcCCCCCCCCcchhhhhhhhhhhHHHHHHh-cccccCccCcc-CCCCCccCCeee
Confidence 999999999999 8999999999999997 89999999999999999999975 67899999999 899999999999
Q ss_pred ccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcE
Q 002290 237 PARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGR 316 (941)
Q Consensus 237 p~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~ 316 (941)
||+|||||||||+||||||||+||||||.|||+||+++|+++ ++++++||+-.++ |.| |++|+|+
T Consensus 809 ~piiP~lLvNGa~GIatG~sT~IP~hNp~EVi~~i~~~l~~e-----~~~~~~P~~~gf~-G~i---------~~~g~G~ 873 (1388)
T PTZ00108 809 VPIIPMVLVNGAEGIGTGFSTSIPNYNPLDIIDNLRRRLNGE-----EVRPLVPWYRGFK-GTI---------ERNPKGK 873 (1388)
T ss_pred cCccchhhccCCceeEeeeecCCCCCCHHHHHHHHHHHHcCC-----chhhhcCcCCCCC-cEE---------EecCCeE
Confidence 999999999999999999999999999999999999999995 4567777644443 444 5899999
Q ss_pred EEEEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHH
Q 002290 317 ITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVN 396 (941)
Q Consensus 317 ~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~ 396 (941)
|++||+++++. +++|+||||||++|+++|+++|++ +..+++++|+||+|+|+++|++|+|+|+++..++.+++
T Consensus 874 ~~~rG~~~~~~------~~~i~ITELP~~~~t~~y~e~l~~-~~~~~~~~I~d~~d~s~~~~v~~~I~l~~~~~~~~~~~ 946 (1388)
T PTZ00108 874 FISKGIYEKVP------DGTVEITELPIGKWTEDYKEFLES-ETLKEKDVIVDYRDYSTANTVHFTVKLNDGVLEQWEEE 946 (1388)
T ss_pred EEEEEEEEEec------CCeEEEEeCCCcccHHHHHHHHHH-HHhcCCCcceeeeeccCCCceEEEEEECCCcCHHHHHH
Confidence 99999998863 458999999999999999999999 66778899999999999999999999999999999999
Q ss_pred HHHhhcccceeeee-eEEEEE-CC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-ChHHHH
Q 002290 397 SLYRLTALQSSFSC-NMVGIL-DG-QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD-NLDRVI 472 (941)
Q Consensus 397 ~L~k~t~Lq~s~~~-N~~~l~-~~-~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~-~iD~vI 472 (941)
+|||+|+||++|++ ||++++ +| .|+|+++.+||++|++||+++|+||++|+|+++++++|+++|+++++. .++..|
T Consensus 947 ~L~k~~kL~~s~~~~Nm~~~d~~g~i~~~~~~~~Il~~f~~~Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i 1026 (1388)
T PTZ00108 947 GIEKVFKLKSTISTTNMVLFDENGKIKKYSDALDILKEFYLVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGEL 1026 (1388)
T ss_pred HHHHhcCCceeecceeEEEEeCCCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 99999999999999 777775 45 499999999999999999999999999999999999999999999764 566666
Q ss_pred HHHhcCCChHHHHHHHHHHhCCC---H-----------------------------------HHHHHHHhccHHHhhHHH
Q 002290 473 RIVREAPSNSTASAALKDEFKLS---E-----------------------------------KQADAILDMNLRRLTMLE 514 (941)
Q Consensus 473 ~iIr~s~~~~~a~~~L~~~f~~s---~-----------------------------------~qaeaIL~M~L~rLT~le 514 (941)
.+.+. ..+++.+.|.+. +|. . .+|+|||+||||+||.++
T Consensus 1027 ~i~~~--~k~~l~~~L~~~-gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~ 1103 (1388)
T PTZ00108 1027 VITNA--KKKDLVKELKKL-GYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEK 1103 (1388)
T ss_pred EEccC--CHHHHHHHHHHc-CCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHH
Confidence 55443 445677777553 221 0 179999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 002290 515 RKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~ 559 (941)
+++|++|+++++++++.|+.. ...++|.++|+++.++|-.
T Consensus 1104 v~kL~~e~~~~~~e~~~L~~~-----t~~~lw~~DL~~~~~~~~~ 1143 (1388)
T PTZ00108 1104 VEKLNAELEKKEKELEKLKNT-----TPKDMWLEDLDKFEEALEE 1143 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 6779999999999999864
No 18
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-39 Score=375.02 Aligned_cols=168 Identities=31% Similarity=0.486 Sum_probs=154.5
Q ss_pred eecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhc--CcCCCChhhHH
Q 002290 85 VPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG--KFHPHGDNAVY 162 (941)
Q Consensus 85 ~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g--~yHpHGd~s~y 162 (941)
-.+.+++++ +.|+-|+|.- |||++.|||||+||++||+||++|. +...||||++|.|+. .|| ||++|+.
T Consensus 645 ~~v~~sdf~-~elilf~~~~----sIp~~~dglkpgqRkv~~~~~k~n~---~~E~Kv~ql~g~v~~~s~yh-hge~sl~ 715 (842)
T KOG0355|consen 645 KFVTISDFV-KELILFSNAD----SIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQSLM 715 (842)
T ss_pred ceeEHHHHH-HHHHHHHhcc----ccHhHHhccCccchhhhhhhhhhcC---CCceeEeeecchHHHHHHhh-cccHhHH
Confidence 346788989 9999998875 9999999999999999999999984 456899999999975 699 9999999
Q ss_pred HHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccce
Q 002290 163 DSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPT 242 (941)
Q Consensus 163 ~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~ 242 (941)
.|||+|||+|.+ +|||++||+|++|+++++.+|+.. |+.++.|. |.||+.+||+ |+|++||
T Consensus 716 ~ti~~l~q~~~g----------------kdaa~~ryi~t~l~~~tr~~f~~~-dd~ll~~~-~~~~~~vep~-y~pi~p~ 776 (842)
T KOG0355|consen 716 STIVNLAQDFVG----------------KDAASARYIFTKLSPLTRLLFPPA-DDLLLKYL-NEDGQRVEPE-YCPIIPM 776 (842)
T ss_pred HHHHHHHHhhcC----------------CcchhhHHHHHhcChhhhhcCCCC-chhHhhhh-ccCCcCcCcc-cccceeE
Confidence 999999999986 899999999999999999988765 56788884 7899999999 9999999
Q ss_pred eeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCC
Q 002290 243 LLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEA 280 (941)
Q Consensus 243 lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~ 280 (941)
+|+||+.|||+||||+||+|||+||+.++++++++++.
T Consensus 777 vlvngaegiGtGws~~i~n~n~~~iv~~~r~~~~~~~~ 814 (842)
T KOG0355|consen 777 VLVNGAEGIGTGWSTFIPNYNPREIVKNIRRLINGEPP 814 (842)
T ss_pred EEeeccccccCCccccCCCCCHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999853
No 19
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=4.9e-34 Score=351.04 Aligned_cols=244 Identities=20% Similarity=0.283 Sum_probs=223.8
Q ss_pred ceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEE---------------------------------e
Q 002290 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV---------------------------------C 629 (941)
Q Consensus 583 ~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~---------------------------------~ 629 (941)
+.++++|++|+.=|.+.++.....|.+.|+.+++|++||.++++.. |
T Consensus 672 ~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 751 (957)
T PRK13979 672 KFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKISDKDNKSSISVFT 751 (957)
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCCEEEEEEEEhhhhhcchhhhcccccceeecccccccccceee
Confidence 5789999999999999999999988889999999999999987764 5
Q ss_pred eCCceEEEEccCCeEEEEEecccCCcCccccCccccccc-ccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccc
Q 002290 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQIL-SLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708 (941)
Q Consensus 630 ~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i-~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f 708 (941)
++||+|+|||+.|++|++++|+||+ |+++|.|+++++ ++.++|+|++++++++|.++.+++++|++|++||+++++|
T Consensus 752 ~T~d~Ll~FTn~Gkvy~ikv~eIPe--~~~kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~Ll~vTk~G~iKRt~lsef 829 (957)
T PRK13979 752 NSSKNLLIFSDEGKVYKIPAFMLQN--IKNEGINISALTGDFEKDEKIIKIISIFEFEEDLSIYFFSKKGLVKKTLLNEF 829 (957)
T ss_pred cCCceEEEEecCCeEEEEEeeeccc--ccccCcCHHHhhcccCCCCeEEEEEeecccCCCceEEEEecCCcEEEeEHHHh
Confidence 6899999999999999999999999 899999999999 7999999999999998866678999999999999999999
Q ss_pred cccccCceEEEecCC-CCeEEEEEEec-CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEeccc
Q 002290 709 SSIRTTGIIAIQLVP-GDELKWVRCCT-NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAA 786 (941)
Q Consensus 709 ~~~~r~G~~~ikLk~-gD~Lv~v~~~~-~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~ 786 (941)
...++ |..+++|++ +|+|+++..+. ++++|+++|++|+++||++++||.+||.++||++|+|++||+|+++.+++..
T Consensus 830 ~~~rr-~~~aikLke~~DeLV~v~~v~~~~~eIvL~T~~G~~iRf~~~eIr~~GR~A~GVk~I~L~~~D~Vv~~~~i~~~ 908 (957)
T PRK13979 830 KGEGN-STQAYKFKHKEDELVNVDIKEHEEKNILLITEKGMAIRFKSEAVNPMGKIASGVTGISLKDEDKVIYGSIIDEN 908 (957)
T ss_pred cccCC-CeEEEEecCCCCeEEEEEEecCCCCEEEEEECCCeEEEEEhHHCCcccccCCCeEEEEeCCCCEEEEEEEEcCC
Confidence 99877 478999986 79999999998 6889999999999999999999999999999999999999999999887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcE
Q 002290 787 LHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRL 848 (941)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~l 848 (941)
....++++|++|||||+++++|+.++|+++|++++.|--+|.+
T Consensus 909 -------------------~~~~ll~iTe~G~gKr~~~~e~r~~~Rg~kGv~~~~~~~~~~~ 951 (957)
T PRK13979 909 -------------------DTRKIKLKSKAKDKGEIEIKDIKLQNRAGRGNSLMPLLLNDFI 951 (957)
T ss_pred -------------------CCceEEEEEcCCceEEeEHHHccccCCCCCCcEEEEeccccce
Confidence 0236999999999999999999999999999999998766654
No 20
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=99.97 E-value=1.7e-37 Score=362.45 Aligned_cols=813 Identities=11% Similarity=-0.020 Sum_probs=583.9
Q ss_pred cccccccccccccccccCCCCccccCCCCCCCCCCCccccccc---cccccCCCcccc-CCCCCCCCceecchhHHHHHh
Q 002290 21 SSSFFLFHNHCRHARFLSSPRRFLSFPPSRPPPSSRTPILASK---DEERNGNGSVAT-VGPNVSPRIVPVELHEEMTGS 96 (941)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 96 (941)
++.+.+..|.|+......+. +|.. ..+++...--.++-. ...-||-+.-.+ +....+-+++++.|+.|-.+.
T Consensus 13 ~~ehiL~rPdtyig~ve~~~-~~~w---v~~~e~~k~~~~t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~~i 88 (842)
T KOG0355|consen 13 QLEHILLRPDTYIGSVEPTE-QLMW---VYDMEKRKMVQRTYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKNEI 88 (842)
T ss_pred hhhhhhcCCcccccccccce-eEEe---eeccccCceeEeecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCCEE
Confidence 35556666777766666666 6666 232222211111100 011111111111 233445589999999999999
Q ss_pred hHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCce
Q 002290 97 YITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRY 176 (941)
Q Consensus 97 ~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~ 176 (941)
++-|+-+.|--|+.|...++++|.++.+|+++++.|-+..|.+.+++..++.+.+.||||+....|+..++|||.++-.-
T Consensus 89 sv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~ 168 (842)
T KOG0355|consen 89 SVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWIN 168 (842)
T ss_pred EEEeCCCcceeeecccccccchHHHHhhhhhccccCCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCccccccee
Q 002290 177 PLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMA 256 (941)
Q Consensus 177 pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~a 256 (941)
|+..++++|++..-|++ ||+|+++|-...+.+.++|+++|+++.+++-...+|. .+..+|..+-|++.+++++|+
T Consensus 169 nm~~~~~~~i~~~~~~~----yTkitF~PDl~~F~m~eLD~Div~l~~rr~~d~a~~~-~~vkv~ln~~~~~~~~f~~yv 243 (842)
T KOG0355|consen 169 NMTRDEEPKIVPSTDED----YTKITFSPDLEKFKMKELDDDIVALMARRAYDLAGSV-KSVKVELNGKNIPVKGFYDYV 243 (842)
T ss_pred CCcccCCceeecCCCCC----cceEEeCcChHhcCchhhcchHHHhHHhhhhhhcccc-cceeeeecCCCCccchHHHHH
Confidence 99999999999976666 9999999999998889999999999999999999999 999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcce
Q 002290 257 TNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMG 336 (941)
Q Consensus 257 T~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~ 336 (941)
+.+|| |+ ..+.....|.++.-+.-|+...++-+.|++ +..........+-|..+.+.-+.+.+++.+..+.++
T Consensus 244 ~~~~~-~~--~~~~~~~~ihe~~~~RwEv~~a~s~~~fqq--isfvNsI~T~kGGThVd~V~D~iv~~l~~vvkKk~~-- 316 (842)
T KOG0355|consen 244 KMYLE-VL--WLNDDLKPLHEVLNFRWEVALALSDVGFQQ--VSFVNSIATTKGGTHVDYVVDQIVAKLIDVVKKKKV-- 316 (842)
T ss_pred hhccc-cc--cccCcchhhhcccchHHHHhhhccccccce--eeeecceeecCCCcccchhhhhHHHHHHHHhccccc--
Confidence 99999 77 666667788888888889999999999998 222222221222333333444444444444332222
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEEE
Q 002290 337 VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGIL 416 (941)
Q Consensus 337 i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l~ 416 (941)
-.++++|+...++.+.-.+..++++...++.+..+..+...++....+|++...+....+. +-..-+|.++++++..|.
T Consensus 317 ~~~~svk~f~vkn~L~vfVN~lIENPtFesQTke~lt~~~~~fgs~~elsek~~k~~~~~~-i~esils~s~~~~~~dL~ 395 (842)
T KOG0355|consen 317 KKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSDCELSEKFTKAIELKG-VVESILSKSLNKYKDDLA 395 (842)
T ss_pred ccccccchhhhhcceEEEEEEEecCccccccchhhcccccccccceEeehhHHHHHHHhCc-hHHHHHHHHHHHHHHhhh
Confidence 2668999999999999999999999999999999998888899999999988887666666 556778888999999888
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCH
Q 002290 417 DGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSE 496 (941)
Q Consensus 417 ~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~ 496 (941)
.+.++-++..+-+..+.+.+....+ +......-+.++-+..++-+-.+...+....-|=.-...--...++..+..+..
T Consensus 396 kk~~~~~s~~e~I~KleDa~~ag~k-~s~kctlIltEgdsaksLavsGl~vvgRd~~gVfplrgklLNv~e~s~kqilkn 474 (842)
T KOG0355|consen 396 KKRGKLTSRSKGIPKLEDANDAGTK-TSEKCTLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHKQILKN 474 (842)
T ss_pred hhhhhhhccccchhHhhhccccccc-ccccceeEEeccccchhheecccccccceeEeecccccchhhhHHHHHHHHHHH
Confidence 8888888999999999999999888 655555555555555444333343333322111000000011233344455567
Q ss_pred HHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHhCCCcccccccCCCCCCCc
Q 002290 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI-ELKNRFSTPRLSMLEDADSGQLDD 575 (941)
Q Consensus 497 ~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~-elk~kfg~~RRT~I~~~~~~~~~~ 575 (941)
.++++|+.+-+.++++.+. ..|--..-+.+--..+ ..|=..+..+|++.+. .....|..| -|++.....+..
T Consensus 475 ~EI~aIikIlgl~~~~~y~---~~eslryg~~mimtDQ-d~dgshikgllInf~~~~~psl~~~~---fleefitpi~k~ 547 (842)
T KOG0355|consen 475 AEINAIIKILGLQYKKKYF---DVESLRYGKLMIMTDQ-DHDGSHIKGLLINFIHHFWPSLLQIP---FLEEFITPIVKA 547 (842)
T ss_pred HHHHHHHHHHHHHHhhhhc---cccccchhheEeeecc-ccccchHHHHHHHHHHHhhHHhhcCC---cceecCCcceEe
Confidence 7899999888888888761 1111111111111112 2233445555555544 356667666 555443333444
Q ss_pred cccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCc
Q 002290 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC 655 (941)
Q Consensus 576 ~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~ 655 (941)
.+-.++.. +.|-.+|.|+++...+ .+.++.++..++++...|+....+.|..+++++|+...|..+......++..
T Consensus 548 ~~~~~~~~---fys~pey~kw~~~~~~-~~~~~ikyykglgts~~~e~keyf~~~~~h~~~F~~~~~~d~~~i~~af~k~ 623 (842)
T KOG0355|consen 548 TKGKQEVS---FYSLPEYEKWKKNTDN-WKSWKIKYYKGLGTSTSKEAKEYFSDLDRHRILFKYDGGIDDEAIDMAFSKK 623 (842)
T ss_pred ccCCccee---eeccHHHHHHHhcCcc-ccccceEEeecCCcccHHHHHHHhcCcchheEEEeccCcchHHHHhhhcccc
Confidence 44444444 8899999999998877 4556666777888889999999999999999999999999999999999999
Q ss_pred CccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC
Q 002290 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735 (941)
Q Consensus 656 ~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~ 735 (941)
++.+++++|++.++...+ +.+..+++++|. .+++++.+.+ -|+.+...-++.+|+-+..+++...++++.++..|..
T Consensus 624 k~~~rk~wL~~~~~~~~~-~~~~~v~~sdf~-~elilf~~~~-sIp~~~dglkpgqRkv~~~~~k~n~~~E~Kv~ql~g~ 700 (842)
T KOG0355|consen 624 KIDARKEWLRKYMPEYLY-KTTKFVTISDFV-KELILFSNAD-SIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGS 700 (842)
T ss_pred cHHHHHHHHHHHhHHhcc-cccceeEHHHHH-HHHHHHHhcc-ccHhHHhccCccchhhhhhhhhhcCCCceeEeeecch
Confidence 999999999999987666 889999999998 7788888888 8888888888888877899999999999999999887
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEec
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSE 815 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe 815 (941)
.+++-.....++++.-.+..+...-+ |. | .+. ..++ ++.. -+-.+..++..++.++.-.
T Consensus 701 v~~~s~yhhge~sl~~ti~~l~q~~~---gk--------d--aa~----~ryi--~t~l--~~~tr~~f~~~dd~ll~~~ 759 (842)
T KOG0355|consen 701 VAEMSAYHHGEQSLMSTIVNLAQDFV---GK--------D--AAS----ARYI--FTKL--SPLTRLLFPPADDLLLKYL 759 (842)
T ss_pred HHHHHHhhcccHhHHHHHHHHHHhhc---CC--------c--chh----hHHH--HHhc--ChhhhhcCCCCchhHhhhh
Confidence 77777777777654433333332212 20 0 000 0000 0000 0001233456789999999
Q ss_pred CccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCce
Q 002290 816 SGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGV 895 (941)
Q Consensus 816 ~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV 895 (941)
+|+++|++.+ |... .-|.|-.|.+=++.-+..+.+. -...+|+....++..-+ ++.+++++.|+.+|.
T Consensus 760 ~~~~~~vep~-y~pi-------~p~vlvngaegiGtGws~~i~n---~n~~~iv~~~r~~~~~~-~~~~~~p~yr~frg~ 827 (842)
T KOG0355|consen 760 NEDGQRVEPE-YCPI-------IPMVLVNGAEGIGTGWSTFIPN---YNPREIVKNIRRLINGE-PPKAMAPWYRNFRGT 827 (842)
T ss_pred ccCCcCcCcc-cccc-------eeEEEeeccccccCCccccCCC---CCHHHHHHHHHHhhcCC-CcccCCchhhhcceE
Confidence 9999999999 8765 3354544433333322211112 13457888888877777 899999999999997
Q ss_pred EEE
Q 002290 896 ILM 898 (941)
Q Consensus 896 ~lm 898 (941)
.-.
T Consensus 828 i~~ 830 (842)
T KOG0355|consen 828 IEV 830 (842)
T ss_pred EEE
Confidence 543
No 21
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.96 E-value=3.3e-28 Score=295.09 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=179.3
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCe
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV 766 (941)
+++++|++|++||+||+++++|..+++ .+++++++|+++.+..++++++|+++|++|++++|++++||.+||.++|+
T Consensus 496 ~E~~lV~lTk~G~IKrt~l~~f~~~r~---~ai~Lke~Delv~v~~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~Gv 572 (738)
T TIGR01061 496 NEDYYVLITKAGYIKRTSNRSFASSKY---TDFGSKDDDILFAQTIANTTDQILIFTSLGNIINIPVHKLADIRWKDLGE 572 (738)
T ss_pred ccceEEEEccCCEEEEeehhhhhhhcc---cccCCCCCCEEEEEEEecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCCc
Confidence 678999999999999999999998764 46789999999999999999999999999999999999999999999997
Q ss_pred ---eeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc
Q 002290 767 ---VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843 (941)
Q Consensus 767 ---~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~ 843 (941)
++|+|++||+|+++..+.+.. ..+.+++++|++|++||+++++|+.. |+++|+.+++++
T Consensus 573 ~Ivk~i~L~~~D~Iv~~~~v~~~~-----------------~~~~~ll~vT~~G~~KRt~l~e~~~~-r~~kGv~~ikLk 634 (738)
T TIGR01061 573 HLSNKITFDENETIVFVGTMNEFD-----------------VDQPILVLASKLGMVKRIELTELNIK-RNSKATLCIKLK 634 (738)
T ss_pred ChhhcccCCCCCeEEEEEEecccc-----------------CCCcEEEEEecCCeEEEeEHHHhccc-cCCCceEEEecc
Confidence 789999999999998885410 01246999999999999999999987 578999999999
Q ss_pred CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 844 ~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
++|+++++.++ +++++|+++|++|+++||++++||.+||.++||++|+|.++|+|+++..+.
T Consensus 635 ~~d~lV~a~~v--------~~~d~IlliT~~G~~iRf~~~dI~~~gR~a~GV~~I~L~~~D~Vv~~~~v~ 696 (738)
T TIGR01061 635 DKDHLISAFLQ--------QKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFE 696 (738)
T ss_pred CCCcEEEEEEe--------CCCCEEEEEECCCeEEEEEHHHCCcccccCCCeEEEEeCCCCEEEEEEEec
Confidence 99999998876 346789999999999999999999999999999999999999999988875
No 22
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=99.95 E-value=4.3e-27 Score=288.65 Aligned_cols=197 Identities=22% Similarity=0.333 Sum_probs=181.3
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
.++++++++|++||+||+++++|..+++ .|..+++|+++|.++++..|+++++|++||++|++|+|++++||+++|++
T Consensus 600 ~~~~~lvliT~~GyiKRi~l~~~~~~~r--~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~ 677 (800)
T TIGR01063 600 DDGLYLFFATKNGVVKKTSLTEFSNIRS--NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA 677 (800)
T ss_pred CCCCEEEEEeCCCEEEEEEhHHhhhhcc--CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC
Confidence 4567899999999999999999998876 47889999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC--ceEEEecCC-CCeEEEEEEecCC
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVP-GDELKWVRCCTND 736 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~-gD~Lv~v~~~~~~ 736 (941)
.| +.+++|.+||+|+++.+++ ++.+++++|++|++||+++++|..++|+ |+.++++++ +|+|+++..+.++
T Consensus 678 ~G---v~~i~L~~~E~Vv~~~~v~---~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~ 751 (800)
T TIGR01063 678 RG---VRGIKLKNEDFVVSLLVVS---EESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDD 751 (800)
T ss_pred CC---eecccCCCCCEEEEEEEec---cccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCC
Confidence 99 6678999999999999886 4557999999999999999999998764 889999976 5899999999888
Q ss_pred CeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEec
Q 002290 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP 784 (941)
Q Consensus 737 d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~ 784 (941)
++++++|++|++++|++++||.+||.++||++|+|++||+|+++..++
T Consensus 752 ~~v~liT~~G~~lrf~~~eI~~~gR~a~GVk~i~L~~~D~vv~~~~i~ 799 (800)
T TIGR01063 752 DELMLITSAGKLIRTSVQDVSEQGRNTQGVRLIRLDEDDKLVSVSKVA 799 (800)
T ss_pred CeEEEEecCCeEEEeeHhhCCccccCCCCeeeeeeCCCCEEEEEEEec
Confidence 899999999999999999999999999999999999999999987653
No 23
>PRK05560 DNA gyrase subunit A; Validated
Probab=99.95 E-value=4.3e-27 Score=289.15 Aligned_cols=198 Identities=23% Similarity=0.348 Sum_probs=182.8
Q ss_pred CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcccc
Q 002290 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA 660 (941)
Q Consensus 581 ~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~ 660 (941)
++++++++|++||+||+++++|..++++ |..+++|+++|.+++++.|+++|+|++||++|++|+|++++||+++|++.
T Consensus 603 ~e~~lvlvTk~GyiKRi~l~~~~~~~r~--G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~ 680 (805)
T PRK05560 603 DDKYLFFATKNGTVKKTSLSEFSNIRSN--GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR 680 (805)
T ss_pred CCCEEEEEeCCCEEEEEEhHHhhhcccC--CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC
Confidence 6789999999999999999999988765 78899999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC--ceEEEecCC-CCeEEEEEEecCCC
Q 002290 661 GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVP-GDELKWVRCCTNDD 737 (941)
Q Consensus 661 G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~-gD~Lv~v~~~~~~d 737 (941)
| +.+++|.+||+|+++.++++ ++.+++++|++|++||+++++|..++|+ |+.++++++ +|+|+++..+.+++
T Consensus 681 G---v~~i~L~~~E~Vv~~~~v~~--~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~ 755 (805)
T PRK05560 681 G---VRGIKLREGDEVVSMDVVRE--DSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDD 755 (805)
T ss_pred C---cccccCCCCCEEEEEEEEcC--CCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCC
Confidence 9 66788899999999998863 3347999999999999999999988774 789999976 79999999998888
Q ss_pred eEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecc
Q 002290 738 LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785 (941)
Q Consensus 738 ~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~ 785 (941)
+++++|++|++++|++++||.+||.++||++|+|++||+|+++..++.
T Consensus 756 ~v~i~T~~G~~lrf~~~eI~~~gR~a~GVk~I~L~~~D~V~~~~~i~~ 803 (805)
T PRK05560 756 EIMLITDSGKLIRTRVSEISITGRNTQGVRLIRLDEGDKVVSVARVAE 803 (805)
T ss_pred eEEEEecCCeEEEEEHHHCCccccCCCCeeeEecCCCCEEEEEEEecC
Confidence 999999999999999999999999999999999999999999887753
No 24
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=99.94 E-value=8.1e-26 Score=274.55 Aligned_cols=189 Identities=16% Similarity=0.257 Sum_probs=171.0
Q ss_pred CCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCC
Q 002290 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765 (941)
Q Consensus 686 ~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~G 765 (941)
.++++++++|++||+||+++++|..+ +++|+++|+|+++..|+++++|+++|++|++++|++++||. || ++|
T Consensus 505 ~~e~~lVllTk~GyIKR~~l~~f~~~------aikLke~D~Lv~v~~~~t~d~LllfT~~Grv~r~~~~eIP~-gr-a~G 576 (742)
T PRK05561 505 PDEPVTVVLSKKGWVRRAKGHSIDAS------GLSFKEGDSLLFAFEARTTDKLLLFTSTGRVYSLPVHELPS-AR-GDG 576 (742)
T ss_pred cCcceEEEEecCCEEEeccchhhhhh------ccccCCCCeEEEEEEecCCCeEEEEECCCcEEEeEHHhCCC-cC-CCC
Confidence 36789999999999999999999875 78999999999999999999999999999999999999999 88 899
Q ss_pred e---eeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEc
Q 002290 766 S---VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKF 842 (941)
Q Consensus 766 V---~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl 842 (941)
+ .+++|++||+|+++..+.+ +++++++|++|++||+++++|+..+|+++|+ +++
T Consensus 577 v~i~~~i~L~~gE~Iv~~~~~~~---------------------~~~lllvT~~G~~KRt~lse~~~~~R~gkg~--i~L 633 (742)
T PRK05561 577 EPLTGLVDLAPGEEIVHVLAFDP---------------------DQKLLLASSAGYGFVVTLEDLVARTRAGKAV--INL 633 (742)
T ss_pred cChhhhcCCCCCceEEEEEEEcC---------------------CcEEEEEECCCcEEEEEhhhccccCCCCeEE--EEe
Confidence 9 7899999999999987632 2479999999999999999999998876655 556
Q ss_pred cCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcC-CCCeEEEEEEecC
Q 002290 843 SAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE-LSGKIQSASLISV 914 (941)
Q Consensus 843 ~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~-~~d~Vvsv~~i~~ 914 (941)
+++|+++++.++ .++++++++|++|+++||++++||.+| .++||++|+|. ++|.|+++.++..
T Consensus 634 k~~D~Lv~a~~v--------~~~d~I~liT~~G~~irf~~~eI~~~g-~a~GVk~i~L~~~~D~Vv~~~~v~~ 697 (742)
T PRK05561 634 KDGDEVLPPVPV--------EDDDHLAAITSNGRLLVFPLSELPELG-KGKGVKLINLPKDDDGLVDLRVLNP 697 (742)
T ss_pred CCCCEEEEEEEe--------CCCCEEEEEeCCCcEEEEEHHHCCCcC-CCcCeEEEEecCCCCEEEEEEEEcC
Confidence 688999999876 245689999999999999999999999 99999999999 8999999988753
No 25
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.93 E-value=1.2e-24 Score=262.05 Aligned_cols=191 Identities=13% Similarity=0.207 Sum_probs=166.2
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCC-
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG- 765 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~G- 765 (941)
+++++|++|++||+||++.++|.. .++++++||.++++..|+++++|+++|++|++++|++++|| +||.+.|
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~~------saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~aGgp 565 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDIDL------STLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SARGQGEP 565 (735)
T ss_pred CcceEEEEecCCEEEeccccccch------hccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cCccCCce
Confidence 688999999999999999999854 47899999999999999999999999999999999999998 5898777
Q ss_pred eee-eeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC
Q 002290 766 SVA-MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA 844 (941)
Q Consensus 766 V~l-i~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~ 844 (941)
+.. ++|++||+|+++..+.+ +++++++|++|||||+++++|+..+|+++|+. ++++
T Consensus 566 V~~~L~L~~gE~Iv~~~~v~~---------------------~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi--~Lk~ 622 (735)
T TIGR01062 566 LTGKLLLPIGATITNILMYSP---------------------NQLLLMASDAGYGFLCNFNDLIARNKAGKALI--NLPE 622 (735)
T ss_pred eEeeecCCCCCEEEEEEEecC---------------------CcEEEEEEcCCcEEEEEhHhccccCcCCeEEE--EeCC
Confidence 444 67899999999988753 24799999999999999999999999877764 4678
Q ss_pred CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcC------CCCeEEEEEEecCC
Q 002290 845 EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE------LSGKIQSASLISVT 915 (941)
Q Consensus 845 ~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~------~~d~Vvsv~~i~~~ 915 (941)
+|+++++..+. .++++++++|++|+++||++++||.++| ++||++|++. .+|.|+++..+...
T Consensus 623 ~d~lv~v~~v~-------~~dd~V~liT~~GrlLrf~v~EIp~~gR-gkGVkli~L~~~~~~~~~~~~~~~~~~~~~ 691 (735)
T TIGR01062 623 NASVIAPLPVN-------GDSDMIAAITEAGRMLVFPIDDLPELSK-GKGNKLIRIPSANAKRGEDGLLDLKIFNKQ 691 (735)
T ss_pred CCEEEEEEEEc-------CCCCEEEEEeCCCcEEEEEHHHCCccCC-CCCeEEEEcCcccccCCCceEEEEEEEcCC
Confidence 89999877662 2234699999999999999999999999 9999999995 46778888777653
No 26
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.8e-20 Score=222.38 Aligned_cols=196 Identities=23% Similarity=0.380 Sum_probs=176.3
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEee-CCceEEEEccCCeEEEEEecccCCcCcc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCR-AHDHVLYFSDRGIVYSARAYKIPECTRN 658 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~-~~d~ll~fT~~G~v~~~~~~eIp~~~r~ 658 (941)
.++.+++++|++|++||+++++|.+.++ .|+.+++|+++|.+..+..+. ..++++++|+.|++.+|+..++|+++|.
T Consensus 599 ~~~~~l~~~T~~G~vK~~~l~~f~~~~~--~g~~ai~L~~~d~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~gr~ 676 (804)
T COG0188 599 NDDQYLFLATKKGYVKKTSLSEFKNIRS--KGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVREMGRG 676 (804)
T ss_pred CCceeEEEEecCCcEEEeehhhhhcccc--CCeeEEEcCCCcceeeeeeccCCCceEEEEecCCeEEEeehhhccccccc
Confidence 3567999999999999999999998875 589999999999999999777 7899999999999999999999999999
Q ss_pred ccCcccccccccCCCCeEEEEEeccccCCCc-EEEEEeccceEEEeecccccccccC--ceEEEec-CCC-CeEEEEEEe
Q 002290 659 AAGTPLVQILSLSDGERITSIIPVSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQL-VPG-DELKWVRCC 733 (941)
Q Consensus 659 a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~-~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikL-k~g-D~Lv~v~~~ 733 (941)
++| +.+++|.++|.++++..+. ++. .++.+|++||+||++..+|+..+|+ |...++. +.+ ..++++..+
T Consensus 677 a~G---v~~i~l~~~d~~~~~~~~~---~~~~~~l~~t~~g~~kr~~~~~~~~~~Rg~~G~~~~~~~~~~~~~~~~~~~v 750 (804)
T COG0188 677 AKG---VKGIKLKEGDKVVSLSVVE---DDEAKLLTVTERGYGKRTKISEYPVTKRGGKGVILIKGTKRNRGKVVAAITV 750 (804)
T ss_pred ccC---cceeecCccCeeeeeeecc---CCceeEEEEeccCceeccchhhccccccCccceecccccccccceEEeeecc
Confidence 999 9999999999999999886 444 7999999999999999999999988 5555544 343 567777778
Q ss_pred cCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEe
Q 002290 734 TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783 (941)
Q Consensus 734 ~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~ 783 (941)
..+++++++|+.|+++|.++.+++.+||+++||+++++.++++++++...
T Consensus 751 ~~~~~~~~~t~~g~~ir~~~~~i~~~~r~t~gv~~~~~~~~~~v~~~~~~ 800 (804)
T COG0188 751 DEDDEIMLITSRGKLIRTAVSEISITGRNTQGVKLINLDEDEKVVSVARV 800 (804)
T ss_pred CCCceEEEEccCceEEEeeccccccccccccceEeeecCCCCeEEEEEec
Confidence 88889999999999999999999999999999999999999999988665
No 27
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=98.55 E-value=1.4e-07 Score=76.06 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=44.7
Q ss_pred CeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEe
Q 002290 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDII 783 (941)
Q Consensus 737 d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~ 783 (941)
|+|+++|++|++++++++++|.++|+++|+++|+|++||+|+++.++
T Consensus 1 d~il~~T~~G~~~r~~~~~i~~~~r~~~G~~~~~l~~~d~iv~~~~v 47 (48)
T PF03989_consen 1 DEILLITSNGYVKRIPLSEIPEQGRGSKGVKIMKLKKGDEIVSVIVV 47 (48)
T ss_dssp EEEEEEETTSEEEEEEGGGSHBCSTTSTTEESSECTTTCSEEEEEEE
T ss_pred CEEEEEeCCCeEEEeeeccccccccCcceeEEEecCCCCEEEEEEEe
Confidence 57999999999999999999999999999999999999999998765
No 28
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=98.48 E-value=2.4e-07 Score=74.70 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=44.6
Q ss_pred ceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEe
Q 002290 866 EQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912 (941)
Q Consensus 866 deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i 912 (941)
|+|+++|++|+++|+++++||.++|+++|+++|+|.++|+|+++..+
T Consensus 1 d~il~~T~~G~~~r~~~~~i~~~~r~~~G~~~~~l~~~d~iv~~~~v 47 (48)
T PF03989_consen 1 DEILLITSNGYVKRIPLSEIPEQGRGSKGVKIMKLKKGDEIVSVIVV 47 (48)
T ss_dssp EEEEEEETTSEEEEEEGGGSHBCSTTSTTEESSECTTTCSEEEEEEE
T ss_pred CEEEEEeCCCeEEEeeeccccccccCcceeEEEecCCCCEEEEEEEe
Confidence 46899999999999999999999999999999999999999998765
No 29
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=97.60 E-value=0.00087 Score=81.09 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=90.7
Q ss_pred ceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeee---eeCCC-CCeEEEEEEeccccccc
Q 002290 715 GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA---MRLKD-GDKMASMDIIPAALHKD 790 (941)
Q Consensus 715 G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l---i~L~~-gD~Ivsv~~~~~~~~~~ 790 (941)
|.....+++||. +..|+++|.|++||++|++ ++++||..+|.++|+.+ +.+.+ +++|.++...+..
T Consensus 480 G~iG~~~K~gD~---l~~~st~D~LLvFT~~Gk~---KV~~Ipe~~~~~kGi~i~~~l~k~d~~EkI~svIY~Dg~---- 549 (635)
T PRK09631 480 GFVGTSVKDGEF---IGNASYYDKILVIRKDGTY---VVKNIPDKTFIDKKNVYVGVVDINNSKEQVFSIIYRDKK---- 549 (635)
T ss_pred CcccCccCCCce---EEEEeCCCEEEEEeCCCcE---EEEECCccCcCCCCcChheeecCCCCCCeEEEEEEEeCC----
Confidence 333456677887 5679999999999999994 89999999999999887 66777 8999999876431
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc-CCCcEEEEEEEeecccCCCCCCceEE
Q 002290 791 LERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQVV 869 (941)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~-~~D~lv~~~~v~~~l~~~~~~~deIl 869 (941)
.+ .=|+|||.+..+...+ -+.+- ++.+++.+. . +....+-
T Consensus 550 ---------------~~--------~~YiKRF~i~~~~~dK-------ey~~~~e~~~l~~~s-~--------~~~~~i~ 590 (635)
T PRK09631 550 ---------------DN--------FYYVKRFKIDKFILDK-------VYRFLPEGTEILFLS-T--------FEDFSLN 590 (635)
T ss_pred ---------------CC--------ceEEEEEecccccccc-------eeeccCCCceEEEEe-c--------CCCcEEE
Confidence 11 2289999997654442 12222 333332211 0 1122222
Q ss_pred E-Eec-CC---eEEEEecCccccccccCCceEEEE
Q 002290 870 L-VSQ-SG---TVNRIKVRDISIQARYARGVILMR 899 (941)
Q Consensus 870 l-vT~-~G---~~iR~~v~eI~~~gR~a~GV~lmk 899 (941)
+ ... .+ ....++++++.+.||.|+|.++-+
T Consensus 591 v~~~~~~~~~~~~~~~d~~ef~VKG~~A~GnrlT~ 625 (635)
T PRK09631 591 LQFVPKPRQKDIVKMFRIDDFLVKGRSAIGKRISS 625 (635)
T ss_pred EEEccCCcccccceEEeHHHceeccccccceEecc
Confidence 2 122 22 344677889999999999998854
No 30
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=97.36 E-value=0.0028 Score=78.28 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=90.4
Q ss_pred EEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeee
Q 002290 691 LVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMR 770 (941)
Q Consensus 691 lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~ 770 (941)
+++.+..||+||. .|..+++++++|.+ ..|++.|.|++||++|+++.+++.+-...|+.- +.+..
T Consensus 487 v~~~~~~~yi~r~----------~G~~g~~~k~~d~v---~~~s~~d~ll~ft~~G~~~~~kv~~k~~~Gk~i--~~~~~ 551 (869)
T PRK12758 487 VVEANQKLYVNRE----------EGFIGTGLKKDEYV---ADCSDIDDVIVFRRDGKYMVTKVADKTFVGKDI--IHVAV 551 (869)
T ss_pred EEEEecceEEEec----------cceecCcccCCceE---EEecCCCeEEEEecCCEEEEEECCccccCCCcc--eEEee
Confidence 4445999999986 26777888888855 479999999999999999999996544433321 22234
Q ss_pred CCCCC--eEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc---CC
Q 002290 771 LKDGD--KMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS---AE 845 (941)
Q Consensus 771 L~~gD--~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~---~~ 845 (941)
++++| .|-.+..-+ +. +..-|+||+.+..+-.-+ -+.|. ++
T Consensus 552 ~~~~~~~~~~~~iy~d-~~--------------------------~~~~~~krf~v~~~~~dk-------~y~~~~~~~~ 597 (869)
T PRK12758 552 FKKNDKRTIYNMIYRD-GK--------------------------SGPSYIKRFNVTGVTRDK-------EYDLTQGTPG 597 (869)
T ss_pred cCCCCcceEEEEEEEc-CC--------------------------CCceEEEEeecccEEecc-------eeeccCCCCC
Confidence 55554 344443332 10 112389999988654332 22222 23
Q ss_pred CcEEEEEEEeecccCCCCCCceEE--EEecCCe----EEEEecCccccccccCCceEEEE
Q 002290 846 DRLAAVFVVGFSLAEDGESDEQVV--LVSQSGT----VNRIKVRDISIQARYARGVILMR 899 (941)
Q Consensus 846 D~lv~~~~v~~~l~~~~~~~deIl--lvT~~G~----~iR~~v~eI~~~gR~a~GV~lmk 899 (941)
.+++.... ..+ ++.+++ .+...++ ...++.+++.+.||+++|..+-+
T Consensus 598 s~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikg~~~~g~~~~~ 650 (869)
T PRK12758 598 SKVLYFSA-----NPN--GEAEVVTVTLKPNGRIKKLKFDLDFSEIAIKGRGSKGNILTK 650 (869)
T ss_pred CEEEEEec-----CCC--CceEEEEEEEecCCccceeEEeechhhhccccccccceEecc
Confidence 34332211 111 111211 2222222 33556789999999999998853
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.01 E-value=1.8 Score=55.43 Aligned_cols=188 Identities=17% Similarity=0.165 Sum_probs=117.4
Q ss_pred cCCcCccccCcccccccccCCCC-eEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceE--EEecC-CCCeE
Q 002290 652 IPECTRNAAGTPLVQILSLSDGE-RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII--AIQLV-PGDEL 727 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~L~~~E-~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~--~ikLk-~gD~L 727 (941)
.|..||+-+|.-+.. |-++. .+..+...+ +...+++..+.+|-+|-=.+.+.... +|.. ..... ++-.+
T Consensus 1029 ~p~~gW~p~G~lVAh---L~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~--~~s~rS~ltys~~~sr~ 1101 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAH---LHEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGE--GGSARSELTYSPEGSRV 1101 (1431)
T ss_pred CCCCCCCccceEeeh---hhhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcC--cceeeeeEEEeccCCce
Confidence 567777777733322 32222 333333333 23489999999999999888766443 1222 22333 67788
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCC
Q 002290 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807 (941)
Q Consensus 728 v~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (941)
..+..|...+.+.+.|++|.+..+.++......+...-++..+++..+.+++|-..... ...
T Consensus 1102 ~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~------------------~~S 1163 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI------------------VQS 1163 (1431)
T ss_pred EEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc------------------ccc
Confidence 88888999999999999999999998876544555555666788888888888554321 112
Q ss_pred CcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEE
Q 002290 808 PWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVN 878 (941)
Q Consensus 808 ~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~i 878 (941)
.-++.+|..|.+--.. .+.+.+. -..+......+|.-.+++ .....+++.|++|.+.
T Consensus 1164 ~~lvy~T~~~~iv~~D---~r~~~~~----w~lk~~~~hG~vTSi~id-------p~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWD---TRMRHDA----WRLKNQLRHGLVTSIVID-------PWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred eeEEEEEeccceEEec---chhhhhH----HhhhcCccccceeEEEec-------CCceEEEEecCCceEE
Confidence 3577889988654433 3332221 123333333344444441 2345788999999986
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=83.07 E-value=58 Score=33.29 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=75.9
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCC-ceeEEEEeeCCceEEEEcc-CCeEEEEEecccCCc
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVND-AMSDFIVCRAHDHVLYFSD-RGIVYSARAYKIPEC 655 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D-~l~~~~~~~~~d~ll~fT~-~G~v~~~~~~eIp~~ 655 (941)
..++.+.+++.+.+|.|+-....... ....+...+ .+..+.. .....+++.+. +|.++.+... .
T Consensus 59 ~~~~~~~l~~~~~~~~i~i~~~~~~~---------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~---~- 124 (289)
T cd00200 59 ASADGTYLASGSSDKTIRLWDLETGE---------CVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVE---T- 124 (289)
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCccc---------ceEEEeccCCcEEEEEE-cCCCCEEEEecCCCeEEEEECC---C-
Confidence 35666788888999999877654321 112233323 3333333 33356666666 8877655433 1
Q ss_pred CccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC
Q 002290 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735 (941)
Q Consensus 656 ~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~ 735 (941)
+.++. .+. .....|..+.... +..+++..+.+|.++..++..... +..+.. ..+.+..+....+
T Consensus 125 -----~~~~~-~~~-~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~-----~~~~~~-~~~~i~~~~~~~~ 188 (289)
T cd00200 125 -----GKCLT-TLR-GHTDWVNSVAFSP---DGTFVASSSQDGTIKLWDLRTGKC-----VATLTG-HTGEVNSVAFSPD 188 (289)
T ss_pred -----cEEEE-Eec-cCCCcEEEEEEcC---cCCEEEEEcCCCcEEEEEcccccc-----ceeEec-CccccceEEECCC
Confidence 11111 111 1233455554432 355566556689888877643211 111221 1223444444444
Q ss_pred CCeEEEEecCCcEEEEecc
Q 002290 736 DDLVAMASQNGMVILSSCD 754 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~ 754 (941)
...+++.+.+|.+..+...
T Consensus 189 ~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred cCEEEEecCCCcEEEEECC
Confidence 4577777778887777654
No 33
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.02 E-value=53 Score=42.99 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=98.6
Q ss_pred ccccccCC-ceEEEEccCceEEEeCCCccccccCCCCCccccccc-CCCceeEEEEeeCCceEEEEccCCeEEEEEeccc
Q 002290 575 DIDIIPND-EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR-VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652 (941)
Q Consensus 575 ~~dlI~~e-~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lk-e~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eI 652 (941)
..-+..++ .+++..|.+|-||--...+.... ++.-.+-..+. ++-.+..+..|.+.|.+.+.|++|.+..+++...
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcC--cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 33345555 79999999999997665443221 11122333444 6777888889999999999999999999988664
Q ss_pred CCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEE
Q 002290 653 PECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRC 732 (941)
Q Consensus 653 p~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~ 732 (941)
-...+...- ....++.....++.|...........++.+|..|-|---+...- . -...++.....-++.-..
T Consensus 1131 ~~~~~~~~~---~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~---~--~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1131 NVSKRVATQ---VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR---H--DAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred ccccceeee---eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---h--hHHhhhcCccccceeEEE
Confidence 222222211 33345666777888876543223347888898876554333211 1 112223322222343444
Q ss_pred ecC-CCeEEEEecCCcEE
Q 002290 733 CTN-DDLVAMASQNGMVI 749 (941)
Q Consensus 733 ~~~-~d~Ill~T~~G~vi 749 (941)
+.. ..-+++.|+.|++.
T Consensus 1203 idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ecCCceEEEEecCCceEE
Confidence 444 44677779999865
No 34
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.29 E-value=29 Score=40.47 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=63.3
Q ss_pred HhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 459 EGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 459 egli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
+-+...+++++.|+.-|-.|.+.+..-+++ .- ..++|=.+-.+-++-+.++.+.+|..+.-.+-++.+++|++
T Consensus 290 er~~~~l~~l~~vl~~Id~s~~nkvvl~Ay----ks---Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~ 362 (439)
T KOG2911|consen 290 ERKVSSLNNLETVLSQIDNSQTNKVVLQAY----KS---GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS 362 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHH----HH---hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 455556677888888777777765444333 22 23444344455788888999999999999999999999987
Q ss_pred HHH-----HHHHHHHHHHHHH
Q 002290 539 RKN-----ILQLIEQEVIELK 554 (941)
Q Consensus 539 ~~~-----~~~~i~~EL~elk 554 (941)
... =.+-|.+||.+|.
T Consensus 363 ~~~~~~d~~de~lEkEL~~L~ 383 (439)
T KOG2911|consen 363 YNVNNIDFEDEDLEKELEDLE 383 (439)
T ss_pred CCCCCCccchHHHHHHHHHHH
Confidence 533 2567888888874
No 35
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=73.70 E-value=1.4e+02 Score=37.71 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=96.2
Q ss_pred eCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccccc
Q 002290 630 RAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFS 709 (941)
Q Consensus 630 ~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~ 709 (941)
-=.++++-.+..|.++-...+.+.+-. +.. ...++. .++.|+++..-+.|- .-+++.+++|..+-.+++.
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~----~l~-~~~~~~-~~~~Ital~HP~TYL--NKIvvGs~~G~lql~Nvrt-- 191 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEEL----YLQ-STFLKV-EGDFITALLHPSTYL--NKIVVGSSQGRLQLWNVRT-- 191 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccc----ccc-ceeeec-cCCceeeEecchhhe--eeEEEeecCCcEEEEEecc--
Confidence 345677777777777766666541110 111 122333 344488887654442 2377889999888876642
Q ss_pred ccccCceEEEecCC-CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCC-CeEEEEEEecccc
Q 002290 710 SIRTTGIIAIQLVP-GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG-DKMASMDIIPAAL 787 (941)
Q Consensus 710 ~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~g-D~Ivsv~~~~~~~ 787 (941)
|.....+++ .+.+..+....--|-|.+.+.+|.++.|++. .|..+|.++-+ -+|.++..-.++
T Consensus 192 -----~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK---------~dkil~sFk~d~g~VtslSFrtDG- 256 (910)
T KOG1539|consen 192 -----GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK---------FDKILMSFKQDWGRVTSLSFRTDG- 256 (910)
T ss_pred -----CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc---------cCcEEEEEEccccceeEEEeccCC-
Confidence 556666664 5666666666667889999999999988753 34556666654 567666544332
Q ss_pred cccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCc
Q 002290 788 HKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSF 827 (941)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~ 827 (941)
.+.+...+++|+.--.++++=
T Consensus 257 -------------------~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 257 -------------------NPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred -------------------CeeEEeccCCceEEEEEcCCC
Confidence 244556667788777777653
No 36
>PLN03237 DNA topoisomerase 2; Provisional
Probab=70.99 E-value=31 Score=46.32 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002290 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIM 462 (941)
Q Consensus 430 ~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli 462 (941)
.+|+.+|++++.+|++|+|.++++|+|+++..+
T Consensus 1016 l~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi 1048 (1465)
T PLN03237 1016 LEYYEKRKEVLLKNLEFELLKLENKVRFILAVV 1048 (1465)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999775433
No 37
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=68.87 E-value=8.9 Score=39.09 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002290 508 RRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549 (941)
Q Consensus 508 ~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~E 549 (941)
-.||.+|.++|+.|+.++++||..|++.|....+...-|+..
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 689999999999999999999999999999887766555544
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.22 E-value=80 Score=35.94 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002290 427 EVLQAFLDFRCSVVE 441 (941)
Q Consensus 427 eil~~f~~~R~~~~~ 441 (941)
+--..|+++|...+.
T Consensus 134 ~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 134 EAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344689999987765
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.20 E-value=1e+02 Score=34.97 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
.++....+++.+++.++++++.-++.-.....-+.+++.+..+..-
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777777777766543
No 40
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.10 E-value=34 Score=34.95 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHh
Q 002290 432 FLDFRC-SVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLRRL 510 (941)
Q Consensus 432 f~~~R~-~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rL 510 (941)
=|.||= .+++++++..++.++++........ ...-+|.||.+++.-++.. +..+-
T Consensus 46 ACGFRWNs~VRkqY~~~i~~AKkqRk~~~~~~-~~ltl~~vI~fLq~l~~~~-----------------------~~~~~ 101 (161)
T TIGR02894 46 ACGFRWNAYVRKQYEEAIELAKKQRKELKREA-GSLTLQDVISFLQNLKTTN-----------------------PSDQA 101 (161)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhccccCc-ccCCHHHHHHHHHHHHhcc-----------------------hhHHH
Confidence 366774 5777788888888887765332110 1123678888775422211 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcc
Q 002290 511 TMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562 (941)
Q Consensus 511 T~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RR 562 (941)
...|..+|++|..+|+++++.|+.-+..-..-...+.++-..+..-....|+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555555555555555554443333334455544444443333444
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=63.09 E-value=1.8e+02 Score=29.60 Aligned_cols=189 Identities=16% Similarity=0.083 Sum_probs=96.2
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeCCceEEEEccCCeEEEEEecccCCcC
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT 656 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~ 656 (941)
.-++.+++++.+.+|.++-.....-. ....+... ..+..+..+...+.++..+.+|.++.+....-
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~---- 83 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGE---------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG---- 83 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCC---------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc----
Confidence 44566788888889988876543211 11112222 22334444455557777777888776654321
Q ss_pred ccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecC
Q 002290 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTN 735 (941)
Q Consensus 657 r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~ 735 (941)
..+.. +. .....|.++.... +..+++..+.+|.+....+.... ....+.. .+.+..+... +
T Consensus 84 -----~~~~~-~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~~-~ 145 (289)
T cd00200 84 -----ECVRT-LT-GHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGK-------CLTTLRGHTDWVNSVAFS-P 145 (289)
T ss_pred -----cceEE-Ee-ccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcE-------EEEEeccCCCcEEEEEEc-C
Confidence 11111 11 1223555555433 34455555558988887765321 1222322 2334433333 3
Q ss_pred CCeEEEEec-CCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEe
Q 002290 736 DDLVAMASQ-NGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVS 814 (941)
Q Consensus 736 ~d~Ill~T~-~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvT 814 (941)
...+++.+. +|.+..+....-. -...+.. ....|.++...++ +..+++.+
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~-------~~~~~~~-~~~~i~~~~~~~~---------------------~~~l~~~~ 196 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGK-------CVATLTG-HTGEVNSVAFSPD---------------------GEKLLSSS 196 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccc-------cceeEec-CccccceEEECCC---------------------cCEEEEec
Confidence 344444444 8887777654111 1111221 1224555444332 34688888
Q ss_pred cCccEEEEeCCC
Q 002290 815 ESGHGKRVPLSS 826 (941)
Q Consensus 815 e~G~gKR~~lse 826 (941)
.+|.+....+..
T Consensus 197 ~~~~i~i~d~~~ 208 (289)
T cd00200 197 SDGTIKLWDLST 208 (289)
T ss_pred CCCcEEEEECCC
Confidence 889888887654
No 42
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=58.76 E-value=2.6e+02 Score=30.11 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=44.2
Q ss_pred EeeCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccc
Q 002290 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNL 707 (941)
Q Consensus 628 ~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~ 707 (941)
.+..++.|++.|+.| +|.... ..+....+..++.+ |..+.+++ +-..+++++. |++.-.++..
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~---------~~~~~~~~i~~~~~---I~ql~vl~---~~~~llvLsd-~~l~~~~L~~ 65 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDL---------SDPSKPTRILKLSS---ITQLSVLP---ELNLLLVLSD-GQLYVYDLDS 65 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEe---------cCCccceeEeecce---EEEEEEec---ccCEEEEEcC-CccEEEEchh
Confidence 456789999999999 666555 11111123333322 78887776 4456666665 9999999988
Q ss_pred ccccc
Q 002290 708 FSSIR 712 (941)
Q Consensus 708 f~~~~ 712 (941)
+....
T Consensus 66 l~~~~ 70 (275)
T PF00780_consen 66 LEPVS 70 (275)
T ss_pred hcccc
Confidence 86654
No 43
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=57.46 E-value=33 Score=35.45 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=39.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCC
Q 002290 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNIL---QLIEQEVIELKNRFST 559 (941)
Q Consensus 507 L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~---~~i~~EL~elk~kfg~ 559 (941)
|.+....-..+|+.|++++.++|+.|+.+.+.-+.+. ..+..||+.+++.|=.
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~ 169 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQ 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555556677888888888888888888776654443 4789999999999843
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.59 E-value=2.1e+02 Score=28.00 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
.++.+|+.++++++.+.+.+-.+|.......+-+..++.++|+-|.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999999999988888888888888888874
No 45
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.50 E-value=88 Score=33.09 Aligned_cols=46 Identities=33% Similarity=0.432 Sum_probs=39.9
Q ss_pred HHHHHHHHhccHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 002290 496 EKQADAILDMNLRRLTML---------ERKKFVDESKTLMEQILKLEELLSSRKN 541 (941)
Q Consensus 496 ~~qaeaIL~M~L~rLT~l---------e~~kL~~E~~~l~~ei~~l~~lL~~~~~ 541 (941)
..|++.||+-.-.+|..+ .+..+.++++.+++++..|+..|++++.
T Consensus 134 k~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999888888776 4889999999999999999999988764
No 46
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=54.11 E-value=24 Score=36.62 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=36.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 507 L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
.--|+.+|.++|..|+.++++||..|+..|+..++- +.|||.|.|
T Consensus 38 ~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH-------~~ELKRKLG 82 (208)
T KOG4010|consen 38 FEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERH-------AAELKRKLG 82 (208)
T ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhC
Confidence 345889999999999999999999999999987754 445555555
No 47
>PRK06771 hypothetical protein; Provisional
Probab=51.54 E-value=1.3e+02 Score=28.20 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----ChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHH
Q 002290 431 AFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD----NLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501 (941)
Q Consensus 431 ~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~----~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaea 501 (941)
-|+-+++.-++++++.+++.++.++..+.-.+-..+ ..|++.+++++.+.. +|.....+.+|++-.+|..
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~Li~~Gkki-~AIK~~Re~tG~~L~eAK~ 88 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQLMEEGQTV-TAVKRVREAFGFSLLEAKQ 88 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHcCCch-HHHHHHHHHcCCCHHHHHH
Confidence 578888888889999999999999887644333322 247899999888776 4777888999998777654
No 48
>PTZ00464 SNF-7-like protein; Provisional
Probab=51.49 E-value=1.5e+02 Score=31.85 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=40.6
Q ss_pred HhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHH
Q 002290 503 LDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRK-----NILQLIEQEVIELKNR 556 (941)
Q Consensus 503 L~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~-----~~~~~i~~EL~elk~k 556 (941)
|.--...++-+.++++..|+.+..+.-+++.++|+.+- .=..-+.+||.++-..
T Consensus 114 LK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 172 (211)
T PTZ00464 114 LKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFD 172 (211)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33334557788899999999999999999999998631 1125677888888765
No 49
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=50.66 E-value=2.2e+02 Score=34.01 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=89.8
Q ss_pred CccccccCCceEEEEccCceEEEeCCCccccccCCCCC---------cccccccCCCceeEEEEeeCCceEEEEccCCeE
Q 002290 574 DDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIG---------KSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIV 644 (941)
Q Consensus 574 ~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G---------~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v 644 (941)
.-.+|.-.++..+.+|++|-|-.-- .|..... +.| ..-.-++.++ ...+....+.|++++.|+.|++
T Consensus 177 ~vv~l~cg~e~svil~~~G~V~~~g--t~r~~e~-~~g~~~~s~k~~~~~~p~~v~~-~~i~qla~G~dh~i~lt~~G~v 252 (476)
T COG5184 177 RVVKLACGWEISVILTADGRVYSWG--TFRCGEL-GQGSYKNSQKTSIQFTPLKVPK-KAIVQLAAGADHLIALTNEGKV 252 (476)
T ss_pred heEEeecCCceEEEEccCCcEEEec--Ccccccc-ccccccccccceeeeeeeecCc-hheeeeccCCceEEEEecCCcE
Confidence 3445677888999999999664321 1111110 111 2233344441 2233456788899999999999
Q ss_pred EEEEecccCCcCccccCcccccccccC--CCC--eEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC-----c
Q 002290 645 YSARAYKIPECTRNAAGTPLVQILSLS--DGE--RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT-----G 715 (941)
Q Consensus 645 ~~~~~~eIp~~~r~a~G~pl~~~i~L~--~~E--~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~-----G 715 (941)
|-..-.+- -..|.|...-+++. .++ .+..+..+ .-...+.+.+.+.|-+=.--++-|..-.-+ |
T Consensus 253 y~~Gs~qk-----gqlG~~~~e~~~~~~lv~~~f~i~~i~~v--acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~ 325 (476)
T COG5184 253 YGWGSNQK-----GQLGRPTSERLKLVVLVGDPFAIRNIKYV--ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIG 325 (476)
T ss_pred EEecCCcc-----cccCCchhhhcccccccCChhhhhhhhhc--ccCcceEEEEcCCCeEEEeccchhcccccCcccccc
Confidence 95443321 22333333333321 111 11111111 124567889999997744444444332211 2
Q ss_pred eEEEe--cCC-CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeee
Q 002290 716 IIAIQ--LVP-GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA 768 (941)
Q Consensus 716 ~~~ik--Lk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l 768 (941)
..+.+ .+. .+-+.-...+.++-+.++++.+|.++-| ||...|..+
T Consensus 326 a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~--------Gr~~~~qlg 373 (476)
T COG5184 326 ALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAF--------GRGDRGQLG 373 (476)
T ss_pred eeeccccccccCCCceEEEEecCcceEEEEecCceEEEe--------cCCcccccc
Confidence 22221 111 2222223345567788999999987776 566555544
No 50
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.62 E-value=2.1e+02 Score=32.53 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=70.1
Q ss_pred CceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccC
Q 002290 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAG 661 (941)
Q Consensus 582 e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G 661 (941)
+..+++.+.+|.+....... |...-....+. ....+-..++|++.+.+|.++.+... .|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~t---------G~~~W~~~~~~---~~~p~~~~~~vyv~~~~G~l~~~d~~---------tG 299 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRS---------GRVLWKRDASS---YQGPAVDDNRLYVTDADGVVVALDRR---------SG 299 (377)
T ss_pred CCEEEEEEcCCEEEEEECCC---------CcEEEeeccCC---ccCceEeCCEEEEECCCCeEEEEECC---------CC
Confidence 44666677888877765532 11111111111 01112245778888889999988753 12
Q ss_pred cccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEE
Q 002290 662 TPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAM 741 (941)
Q Consensus 662 ~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill 741 (941)
+.+-+.-.+. +....+... .+..+++.+.+|++-.++... |...-+++-++.-+...++-.++.|++
T Consensus 300 ~~~W~~~~~~-~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~t-------G~~~~~~~~~~~~~~~sp~~~~~~l~v 366 (377)
T TIGR03300 300 SELWKNDELK-YRQLTAPAV-----VGGYLVVGDFEGYLHWLSRED-------GSFVARLKTDGSGIASPPVVVGDGLLV 366 (377)
T ss_pred cEEEcccccc-CCccccCEE-----ECCEEEEEeCCCEEEEEECCC-------CCEEEEEEcCCCccccCCEEECCEEEE
Confidence 1111110111 111111111 235788889999877765433 333334432232233334444578999
Q ss_pred EecCCcEEEE
Q 002290 742 ASQNGMVILS 751 (941)
Q Consensus 742 ~T~~G~vir~ 751 (941)
.|.+|+++.|
T Consensus 367 ~~~dG~l~~~ 376 (377)
T TIGR03300 367 QTRDGDLYAF 376 (377)
T ss_pred EeCCceEEEe
Confidence 9999999877
No 51
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.91 E-value=2e+02 Score=37.58 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred ceeEEEEeeCCceEEEEccCCeE-EEEEecccCCcCccccCccccccccc------CCCCeEEEEEeccccCCCcEEEEE
Q 002290 622 AMSDFIVCRAHDHVLYFSDRGIV-YSARAYKIPECTRNAAGTPLVQILSL------SDGERITSIIPVSEFAGDQFLVML 694 (941)
Q Consensus 622 ~l~~~~~~~~~d~ll~fT~~G~v-~~~~~~eIp~~~r~a~G~pl~~~i~L------~~~E~Iv~i~~v~~~~~~~~lllv 694 (941)
.+.....-...|.+++.++.... +.+.+....... ....+.++ .++++|+++.-+. +...++++
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~------~~~~l~s~~~~~~~~~~~~ivs~~yl~---d~~~l~~~ 93 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG------SVEVLASWDAPLPDDPNDKIVSFQYLA---DSESLCIA 93 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCC------ceeEEEeccccCCcCCCCcEEEEEecc---CCCcEEEE
Confidence 34444445567777777665554 556555444332 11222222 4678999988765 66789999
Q ss_pred eccceEEEeeccc------ccccc--cCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEE
Q 002290 695 TMNGYIKKVSLNL------FSSIR--TTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVI 749 (941)
Q Consensus 695 T~~GyiKR~~l~~------f~~~~--r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vi 749 (941)
+++|-+-.+..+. ....+ -+|+.++...++++++.+ +++.+.++++|.+--.+
T Consensus 94 ~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~--vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 94 LASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLAL--VTGEGNLLLMTRDFDPI 154 (928)
T ss_pred ECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEE--EeCCCEEEEEeccceEE
Confidence 9999998883322 11111 236777777776666544 44455666666665443
No 52
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.50 E-value=2.3e+02 Score=37.09 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=58.4
Q ss_pred EEEEEEecCCCeEEEEecCCcE-EEEecccccccCCCCCCe-eeeeC------CCCCeEEEEEEecccccccccCCCCCC
Q 002290 727 LKWVRCCTNDDLVAMASQNGMV-ILSSCDIIRSLSRNTRGS-VAMRL------KDGDKMASMDIIPAALHKDLERTPEDS 798 (941)
Q Consensus 727 Lv~v~~~~~~d~Ill~T~~G~v-ir~~v~eI~~~gR~a~GV-~li~L------~~gD~Ivsv~~~~~~~~~~~~~~~~~~ 798 (941)
+.........+.+++++..... ..+.+......+ .+ .+..+ .++++|+++..+.+
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~----~~~~l~s~~~~~~~~~~~~ivs~~yl~d------------- 86 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG----SVEVLASWDAPLPDDPNDKIVSFQYLAD------------- 86 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcceEEEEEeeccCC----ceeEEEeccccCCcCCCCcEEEEEeccC-------------
Confidence 3333333455666666654444 455544443322 11 23344 35689999988765
Q ss_pred CCCCCCCCCCcEEEEecCccEEEEeC------CCccccCCCcceeEEEEccCCCcEEEE
Q 002290 799 HSNVKGSSGPWLLFVSESGHGKRVPL------SSFRKLPLNRVGLIGYKFSAEDRLAAV 851 (941)
Q Consensus 799 ~~~~~~~~~~~lllvTe~G~gKR~~l------se~~~~~R~~kGv~~ikl~~~D~lv~~ 851 (941)
...+++++++|-+..++. .+....+--..|+.++.-..+.+++++
T Consensus 87 --------~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 87 --------SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred --------CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEE
Confidence 367999999999888833 344444444556666666666665443
No 53
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.16 E-value=1.2e+02 Score=31.76 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 002290 511 TMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557 (941)
Q Consensus 511 T~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kf 557 (941)
..++.+++.+|++++++++++- +.=.+.++++.+.+.+.|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~-------~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKK-------EKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4455566666666666666652 223345666666666555
No 54
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.61 E-value=1.1e+02 Score=36.25 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=45.1
Q ss_pred HHHHhcCCChHHHHHHHHHHhCCCHHHHHHHHhccHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH---HHHHH
Q 002290 472 IRIVREAPSNSTASAALKDEFKLSEKQADAILDMNLR-RLTMLERKKFVDESKTLMEQILKLEELLSSRKNI---LQLIE 547 (941)
Q Consensus 472 I~iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~-rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~---~~~i~ 547 (941)
+++||+ +++..+++|.++. +. .+.+.|+++--. +=...+++.|+.|..++.++|..+..--.+.+.+ -+-++
T Consensus 4 ~k~ir~--n~~~v~~~l~~R~-~~-~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~ 79 (425)
T PRK05431 4 IKLIRE--NPEAVKEALAKRG-FP-LDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELK 79 (425)
T ss_pred HHHHHh--CHHHHHHHHHhcC-Cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 355664 5666677777773 32 357777765433 2234567777777777777777643221111111 13345
Q ss_pred HHHHHHHHHh
Q 002290 548 QEVIELKNRF 557 (941)
Q Consensus 548 ~EL~elk~kf 557 (941)
+|++++.++.
T Consensus 80 ~~~~~~~~~~ 89 (425)
T PRK05431 80 EEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 55
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=44.11 E-value=3.6e+02 Score=33.27 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HhCC
Q 002290 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN-RFST 559 (941)
Q Consensus 512 ~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~-kfg~ 559 (941)
...+..|.++.+.+..+|++++..|++.. -++-|++||.-||+ .||+
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~~s-DYeeIK~ELsiLk~ief~~ 363 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNSRS-DYEEIKKELSILKAIEFGD 363 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHhhcCC
Confidence 34577888888888889999999999884 56789999988887 5764
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=43.82 E-value=33 Score=39.96 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=45.6
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhh
Q 002290 337 VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRL 401 (941)
Q Consensus 337 i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~ 401 (941)
+.||.|||.+--++|+.-+.+.+ +.++-+.=+-|++.+.-=+-|||+|.....+.-++.|-|+
T Consensus 47 vfItNIpyd~rWqdLKdLvrekv--Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~ 109 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKV--GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY 109 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhc--CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc
Confidence 88999999986666655444433 4455566677888876557889999888877777777774
No 57
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=43.05 E-value=9.8e+02 Score=32.09 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred CceeEEEEeeCCceEEEEccCCeEEEEEecc--cCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEec
Q 002290 621 DAMSDFIVCRAHDHVLYFSDRGIVYSARAYK--IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTM 696 (941)
Q Consensus 621 D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e--Ip~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~ 696 (941)
|+|+.+..-.....|+++|..|.++...... +..+|-.+.| +..+.-.++|++.+++. ..+.+++.|+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~G---I~aaswS~Dee~l~liT-----~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNG---ISAASWSPDEELLALIT-----GRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCc---eEEEeecCCCcEEEEEe-----CCcEEEEEec
Confidence 4888888778888999999999999886543 4445556666 56666688899888875 3355677776
No 58
>PHA00728 hypothetical protein
Probab=42.87 E-value=29 Score=33.48 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~ 559 (941)
.+++.|++|-++|++++++|+.+++|+.. -=.+++.||.+-|--
T Consensus 5 teveql~keneelkkkla~leal~nn~~~---~~~e~lqEiEnPYTV 48 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNNESA---EEDEELQEIENPYTV 48 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcCCCc---hhhhhHHHhcCCcee
Confidence 57889999999999999999999999653 123566677666643
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.51 E-value=4.2e+02 Score=30.50 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=55.7
Q ss_pred CCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccc
Q 002290 631 AHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSS 710 (941)
Q Consensus 631 ~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~ 710 (941)
..+.|++.+.+|+++.+.... |+.+-+.-.+ .+....+... .+.++++.+.+|++-.++.+.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~t---------G~~~W~~~~~-~~~~~~sp~v-----~~g~l~v~~~~G~l~~ld~~t--- 354 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRG---------GVELWSQSDL-LHRLLTAPVL-----YNGYLVVGDSEGYLHWINRED--- 354 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCC---------CcEEEccccc-CCCcccCCEE-----ECCEEEEEeCCCEEEEEECCC---
Confidence 467888899999999887532 2111000001 1111111111 245788889999988876543
Q ss_pred cccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEEEec
Q 002290 711 IRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSC 753 (941)
Q Consensus 711 ~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v 753 (941)
|...-+.+ .+..+ ...++-.++.|++.|.+|.++.|..
T Consensus 355 ----G~~~~~~~~~~~~~-~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 355 ----GRFVAQQKVDSSGF-LSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ----CCEEEEEEcCCCcc-eeCCEEECCEEEEEeCCceEEEEeC
Confidence 32222222 12222 2333334678999999999998864
No 60
>PLN02678 seryl-tRNA synthetase
Probab=40.87 E-value=1.9e+02 Score=34.58 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHhcC--CChHHHHHHHHHHhCCCHHHHHHHHhccHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Q 002290 472 IRIVREA--PSNSTASAALKDEFKLSEKQADAILDMNLR-RLTMLERKKFVDESKTLMEQILKLE 533 (941)
Q Consensus 472 I~iIr~s--~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~-rLT~le~~kL~~E~~~l~~ei~~l~ 533 (941)
|++||+. .++++.++.|.+++ ++....+.|+++--. +=...+++.|+.|..++.++|..++
T Consensus 4 ~k~ir~~~~~~~~~v~~~l~~R~-~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k 67 (448)
T PLN02678 4 INLFREEKGGDPELIRESQRRRF-ASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK 67 (448)
T ss_pred HHHHhcccccCHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556632 35566677777764 333346777765322 3334556777777777777776543
No 61
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=40.58 E-value=1.1e+02 Score=34.83 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHH
Q 002290 424 GLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADA 501 (941)
Q Consensus 424 ~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaea 501 (941)
.-++|=.++.+.|.+|+.++++ ++++ +.+++.++.+.| +++..|+.+++...-+.|++.++|+.++.+.
T Consensus 63 ~sed~p~a~~ekr~~Vla~lke-----Le~e---v~piv~~le~Pd-~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~ 131 (432)
T KOG2758|consen 63 TSEDMPNALVEKRTEVLAELKE-----LEEE---VAPIVKVLENPD-LIAALRSDKDRVQNLQHLQEHYNFTPERIET 131 (432)
T ss_pred ccccchHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHcCHH-HHHHHHhhhhHHHHHHHHHHhcCCCHHHHHH
Confidence 4578889999999999986644 3333 577788888777 5566688777767778888999988776443
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=39.23 E-value=6.2e+02 Score=28.71 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCC-cEEEEEEEeecccCCCCCCceEEEEecCCeEEEE
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAED-RLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D-~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~ 880 (941)
+..+++.+.+|+.-.+....- ...-++.-++ .+.+..++ .++.|++.|.+|++..|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG---------~~~~~~~~~~~~~~~sp~~---------~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDG---------SFVARLKTDGSGIASPPVV---------VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCccccCCEE---------ECCEEEEEeCCceEEEe
Confidence 457888888998777654332 2222232222 22222222 13579999999998765
No 63
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=38.95 E-value=2.1e+02 Score=25.59 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=44.9
Q ss_pred cccCCCceeEEEEeeCCceEEEE--ccCCeEEEEEecccCCcCccccCcccccccccC-CCCeEEEEEeccccCCCcEEE
Q 002290 616 KLRVNDAMSDFIVCRAHDHVLYF--SDRGIVYSARAYKIPECTRNAAGTPLVQILSLS-DGERITSIIPVSEFAGDQFLV 692 (941)
Q Consensus 616 ~Lke~D~l~~~~~~~~~d~ll~f--T~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~-~~E~Iv~i~~v~~~~~~~~ll 692 (941)
.++.||.+...+..+..-+|.+| ..+|++.++-.+.......-..|++ ..+. ++.... +.....+..+..++
T Consensus 2 ~~~~Ge~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~~~~~~~v~ag~~----~~iP~~~~~~~-~~v~~P~G~e~i~~ 76 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRDGYLYLFYIDADGKVTLLFPNRYQPDNFVKAGQT----YTIPDPGDRFS-FTVDPPFGKERIVA 76 (83)
T ss_pred cccCCCEEEEEEEeCCCeEEEEEEECCCCCEEEEecCccccCceEcCCce----EEcCCCCCceE-EEEcCCCCcEEEEE
Confidence 36789999988888777776665 6899999888765444433333321 1232 222222 22223344566666
Q ss_pred EEecc
Q 002290 693 MLTMN 697 (941)
Q Consensus 693 lvT~~ 697 (941)
++|+.
T Consensus 77 ias~~ 81 (83)
T PF14326_consen 77 IASTE 81 (83)
T ss_pred EEECC
Confidence 66653
No 64
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.95 E-value=52 Score=28.45 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNI 542 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~ 542 (941)
.|+.+|.++++.++.+|..++..|+|+.=+
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~ 33 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFV 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 578999999999999999999999997544
No 65
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=36.16 E-value=8.7e+02 Score=30.92 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccccCCceEEEEccCceEEEeCCCcc--ccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCC
Q 002290 577 DIIPNDEMLLAISEKGYVKRMKPNTF--NLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPE 654 (941)
Q Consensus 577 dlI~~e~~lv~lT~~GyIKR~~~~~f--~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~ 654 (941)
||..+..+.+-+-..+-|++++++.- -......+|....---..-.+.+-+.....=.-+-|+.+|+.+.+...++-.
T Consensus 41 dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lq 120 (893)
T KOG0291|consen 41 DLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQ 120 (893)
T ss_pred EccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeE
Q ss_pred cCccccCccccccccc-------CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeE
Q 002290 655 CTRNAAGTPLVQILSL-------SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDEL 727 (941)
Q Consensus 655 ~~r~a~G~pl~~~i~L-------~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~L 727 (941)
. |.+-|.--...-++ ..-+.|+++.-.+ +..++++-+++=-.+-...+.++....--...++ |.+
T Consensus 121 i-w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~---DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk----d~V 192 (893)
T KOG0291|consen 121 I-WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD---DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK----DYV 192 (893)
T ss_pred E-EecCcchhcccCcceEeeeecCCccceeEEEecc---CCceEEeccccceEEEEEeccccccceEeccCCC----cce
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEecccccccCCCC
Q 002290 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763 (941)
Q Consensus 728 v~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a 763 (941)
++.+...+..+++-++++|.+.....+.=|+....+
T Consensus 193 vacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~ 228 (893)
T KOG0291|consen 193 VACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKA 228 (893)
T ss_pred EEEEeccCcceEEEEecCceEEEEEecCCCcccccc
No 66
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.64 E-value=2.3e+02 Score=33.56 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHhcCCChHHHHHHHHHHhCCCHH-HHHHHHhccHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Q 002290 472 IRIVREAPSNSTASAALKDEFKLSEK-QADAILDMNLR-RLTMLERKKFVDESKTLMEQILKLE 533 (941)
Q Consensus 472 I~iIr~s~~~~~a~~~L~~~f~~s~~-qaeaIL~M~L~-rLT~le~~kL~~E~~~l~~ei~~l~ 533 (941)
|+.||+ +++..++.|.++. ++.. ..+.|+.+--. +=...+++.|+.|..++.++|..+.
T Consensus 4 ik~ir~--n~~~v~~~l~~R~-~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 4 RKLLRN--NPDLVKESLKARG-LSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHh--CHHHHHHHHHhcC-CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456665 5556677777775 3322 36777766542 3334667778888888877777644
No 67
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=33.63 E-value=92 Score=27.45 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred CceEEEEecCCeEEEEecCcccc--ccccCCceEEEEcCCCCeEEEEE
Q 002290 865 DEQVVLVSQSGTVNRIKVRDISI--QARYARGVILMRLELSGKIQSAS 910 (941)
Q Consensus 865 ~deIllvT~~G~~iR~~v~eI~~--~gR~a~GV~lmkL~~~d~Vvsv~ 910 (941)
...|.+.|.+|+.+++|+.-++. +.-+-+|..-|.++++.+.+++.
T Consensus 20 a~~V~v~s~~Gr~v~~Pa~~lRpFvt~~Gv~G~F~l~~d~~~kf~sle 67 (68)
T PF11197_consen 20 ASKVVVRSDDGRRVQFPARHLRPFVTHDGVHGRFRLEFDDNNKFVSLE 67 (68)
T ss_pred ccEEEEEecCCcEEEEeHHHCcceecCCCceEEEEEEECCCCCEEEeE
Confidence 35789999999999999999873 45567888889999998888764
No 68
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.48 E-value=2.2e+02 Score=26.65 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHhCCCHHHHHHHHhccHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Q 002290 480 SNSTASAALKDEFKLSEKQADAILDMNLR-RLTMLERKKFVDESKTLMEQILKLE 533 (941)
Q Consensus 480 ~~~~a~~~L~~~f~~s~~qaeaIL~M~L~-rLT~le~~kL~~E~~~l~~ei~~l~ 533 (941)
+++..++.|..++ ......+.|+++-=. +=-..+++.|+.+...+.++|..+.
T Consensus 10 n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 10 NPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4444455555554 223344444433211 1112334444444444444444443
No 69
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.88 E-value=2.7e+02 Score=32.89 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHH
Q 002290 515 RKKFVDESKTLMEQILKLEELLSSRKNIL-QLIEQEVIELKN 555 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~lL~~~~~~~-~~i~~EL~elk~ 555 (941)
.+-+.+|++..+++++.+++.|+.+.-+| ++|.+||..+.+
T Consensus 252 Le~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcE 293 (426)
T smart00806 252 LETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCE 293 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 34456788888899999999998876666 699999988865
No 70
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=32.53 E-value=2.6e+02 Score=27.87 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHHHHH
Q 002290 424 GLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQADAIL 503 (941)
Q Consensus 424 ~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qaeaIL 503 (941)
+-.++-++|.+.|.+|+.+. +.++++..-+-. .+. -+++++-+|+ |...-.+.|++.++++.++.+++-
T Consensus 59 ~~~e~p~e~~~kr~~Vl~~l-----~~l~~~~~~v~~---~~~-~~ev~~~l~~--dk~~nl~~L~~~h~it~e~id~LY 127 (133)
T PF09440_consen 59 PDDEVPAELAEKREEVLAEL-----KELEEETEPVLE---LLE-DPEVVKNLRS--DKKQNLEYLEENHGITPEMIDALY 127 (133)
T ss_pred CCCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHH---HHc-CHHHHHHHHc--cHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33457788999999998755 334444332222 222 2567788776 666677889999999999998875
Q ss_pred h
Q 002290 504 D 504 (941)
Q Consensus 504 ~ 504 (941)
.
T Consensus 128 ~ 128 (133)
T PF09440_consen 128 K 128 (133)
T ss_pred H
Confidence 3
No 71
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=32.37 E-value=22 Score=32.24 Aligned_cols=19 Identities=58% Similarity=0.978 Sum_probs=15.5
Q ss_pred eeeecCCcccccce--ecCCC
Q 002290 242 TLLLNGASGIAVGM--ATNIP 260 (941)
Q Consensus 242 ~lLvNG~~GIavG~--aT~IP 260 (941)
.+|+-|.+|||+|. +-|||
T Consensus 27 vlliagisgiatgiivslnip 47 (113)
T PRK13711 27 VLLIAGISGIATGIIVSLNIP 47 (113)
T ss_pred EEEEeccccceeeEEEEecch
Confidence 47889999999996 55666
No 72
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=32.34 E-value=2.1e+02 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHH
Q 002290 512 MLERKKFVDESKTLMEQILKLEELLSSR--KNILQLIEQEVIELKN 555 (941)
Q Consensus 512 ~le~~kL~~E~~~l~~ei~~l~~lL~~~--~~~~~~i~~EL~elk~ 555 (941)
.+++++|.++-.+-.+--+++.++|+.. ..--+-|.+||..|..
T Consensus 118 ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLes 163 (209)
T KOG2910|consen 118 IDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALES 163 (209)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3455555555555555555555554431 1112344555555543
No 73
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.46 E-value=9.5e+02 Score=28.22 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred cCCceEEEEccCceEEEeCCC-ccccccCCCCCcccccccCCCceeEE--EEe-eCCceEEEEccCCeEEEEEecccCCc
Q 002290 580 PNDEMLLAISEKGYVKRMKPN-TFNLQNRGTIGKSVGKLRVNDAMSDF--IVC-RAHDHVLYFSDRGIVYSARAYKIPEC 655 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~-~f~~~~rg~~G~~~~~Lke~D~l~~~--~~~-~~~d~ll~fT~~G~v~~~~~~eIp~~ 655 (941)
.+++-+|+++++|.+...++. +| +- ..|.. .++. .+... +.+ ..+.-+++.|..+++|.+.-.+-|..
T Consensus 89 t~~e~LvvV~~dG~v~vy~~~G~~--~f--sl~~~---i~~~-~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~ 160 (410)
T PF04841_consen 89 TDDEELVVVQSDGTVRVYDLFGEF--QF--SLGEE---IEEE-KVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVK 160 (410)
T ss_pred CCCCeEEEEEcCCEEEEEeCCCce--ee--chhhh---cccc-CcccccccccccCCCCEEEECCCCeEEEEeCccccch
Confidence 467788899999998876542 11 10 01111 1111 11111 111 12345888999999998876553321
Q ss_pred CccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC
Q 002290 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735 (941)
Q Consensus 656 ~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~ 735 (941)
-|.-...|- ....+..-.....+.... .+....++++..+-+..+.-..+.. +.....+..+....+
T Consensus 161 ~~~~~~~p~-~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----------i~~~~~i~~iavSpn 227 (410)
T PF04841_consen 161 LRRLPEIPG-LWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----------IDSDGPIIKIAVSPN 227 (410)
T ss_pred hhccccCCC-cccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----------ccCCCCeEEEEECCC
Confidence 111111110 011111111111111111 1344556666667666665555421 111112333333335
Q ss_pred CCeEEEEecCCcEEEEe
Q 002290 736 DDLVAMASQNGMVILSS 752 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~ 752 (941)
...|.++|.+|++...+
T Consensus 228 g~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCEEEEEECCCCEEEEE
Confidence 56777777777766554
No 74
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=29.69 E-value=5.9e+02 Score=26.97 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHH
Q 002290 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSR--K-NILQLIEQEVIELK 554 (941)
Q Consensus 507 L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~--~-~~~~~i~~EL~elk 554 (941)
-..++-++++++..++.+..+.-+++.+.|+++ . .=..-+.+||.++.
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le 174 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLK 174 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 355667788888888888888888888888754 1 11134555665554
No 75
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=29.40 E-value=45 Score=29.43 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=30.1
Q ss_pred HHHHHH-HHHhCCCcccccccCCCCCCCccccccCCceEEE
Q 002290 548 QEVIEL-KNRFSTPRLSMLEDADSGQLDDIDIIPNDEMLLA 587 (941)
Q Consensus 548 ~EL~el-k~kfg~~RRT~I~~~~~~~~~~~dlI~~e~~lv~ 587 (941)
+||.++ .+|||.. -|.|...+-+++++.++|-+.+.+++
T Consensus 29 eeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 29 EELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred HHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEEcCCEEEE
Confidence 455554 5689986 88887666578999999999988775
No 76
>PHA03011 hypothetical protein; Provisional
Probab=28.93 E-value=2.5e+02 Score=26.52 Aligned_cols=65 Identities=22% Similarity=0.450 Sum_probs=47.4
Q ss_pred hCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 492 FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 492 f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
|.+.+.++.+|.+. +-.|. ..-..|.+|+.-++.+++.|+.++.+.+.-.-.+..|++.+|+.-.
T Consensus 52 ~dfk~GD~Nai~e~-ldeL~-~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 52 FDFKEGDINAIIEI-LDELI-AQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred hhcccccHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 66667777777643 22221 2357788899999999999999998877666788889998887643
No 77
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=28.74 E-value=7.5e+02 Score=26.47 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=18.8
Q ss_pred CcEEEEEeccceEEEeecccccccccCceEEE-ecCCCCeEE
Q 002290 688 DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI-QLVPGDELK 728 (941)
Q Consensus 688 ~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~i-kLk~gD~Lv 728 (941)
..+++++..++ +++.++.--... .+.+... .|++||.++
T Consensus 218 ~~~V~v~~~~~-~~~~~V~ig~~~-~~~~~I~~gL~~gd~vv 257 (265)
T TIGR00999 218 RKVVFVRTQEG-FRPRPVKVGRRL-GGYYEVLEGLKPGERVA 257 (265)
T ss_pred cEEEEEEeCCc-eEEEEEEEcccc-CCEEEEecCCCCCCEEE
Confidence 45666666666 566555422111 1122221 466777665
No 78
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.40 E-value=1.7e+02 Score=25.52 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---h-cCHHHHHHHHH
Q 002290 515 RKKFVDESKTLMEQILKLEEL---L-SSRKNILQLIE 547 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~l---L-~~~~~~~~~i~ 547 (941)
+..|++++++++++.++|+.- | +|++.+.++..
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444444444444444444432 2 35555444433
No 79
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.33 E-value=1.6e+02 Score=32.36 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHhC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRK----NILQLIEQEVIELKNRFS 558 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~----~~~~~i~~EL~elk~kfg 558 (941)
+...++++..+|+.|++.|+..+++-. .....|.++|..++.--|
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Confidence 356666777777777777777777665 778888888887776554
No 80
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=26.99 E-value=4.1e+02 Score=29.47 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCC---CcccccccCCCCCCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCcee
Q 002290 548 QEVIELKNRFST---PRLSMLEDADSGQLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMS 624 (941)
Q Consensus 548 ~EL~elk~kfg~---~RRT~I~~~~~~~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~ 624 (941)
+|..++.++|.+ .|.|.|.--....-+.+| -.--.++|+.|+.|.|--+....|..... ++-.-..+
T Consensus 159 ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~~d-~~a~scLViGTE~~~i~iLd~~af~il~~---------~~lpsvPv 228 (257)
T PF14779_consen 159 EEREAFIERYKDSPLKRQTVITCMATIKKSSAD-EDAVSCLVIGTESGEIYILDPQAFTILKQ---------VQLPSVPV 228 (257)
T ss_pred HHHHHHHHHHhcCCcccCceeEEeeeecccccC-CCCcceEEEEecCCeEEEECchhheeEEE---------EecCCCce
Confidence 444556666643 377777432222211111 01235899999999999999888865432 12222223
Q ss_pred EEEEe---e-CCceEEEEccCCeEEEEE
Q 002290 625 DFIVC---R-AHDHVLYFSDRGIVYSAR 648 (941)
Q Consensus 625 ~~~~~---~-~~d~ll~fT~~G~v~~~~ 648 (941)
++... . .+-+|++.|.+|++|.++
T Consensus 229 ~i~~~G~~devdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 229 FISVSGQYDEVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred EEEEEeeeeccceEEEEEeCCCEEEEEe
Confidence 33222 2 455899999999999875
No 81
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.64 E-value=1.8e+02 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Q 002290 515 RKKFVDESKTLMEQILKLE---ELLSSRKNILQLIEQEV 550 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~---~lL~~~~~~~~~i~~EL 550 (941)
+.+++.++++++.+.++|+ .-|++++.+.++-.++|
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 4444444444444444443 23456777766666554
No 82
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=26.62 E-value=1e+03 Score=27.33 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=34.6
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEec
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKV 882 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v 882 (941)
+..|++.+.+|+...++.++-.. +--.++. +..+.+..++ .++.|++.|.+|++..|..
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~-------~~~~~~~-~~~~~s~P~~---------~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRF-------VAQQKVD-SSGFLSEPVV---------ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCE-------EEEEEcC-CCcceeCCEE---------ECCEEEEEeCCceEEEEeC
Confidence 46788999999887776543211 1122232 2222222222 1457999999999987753
No 83
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=26.45 E-value=2.2e+02 Score=37.61 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=49.1
Q ss_pred CeEEEEEEecCCCeEEEEecCCcEEEEeccc--ccccCCCCCCeeeeeCCCCCeEEEEEE
Q 002290 725 DELKWVRCCTNDDLVAMASQNGMVILSSCDI--IRSLSRNTRGSVAMRLKDGDKMASMDI 782 (941)
Q Consensus 725 D~Lv~v~~~~~~d~Ill~T~~G~vir~~v~e--I~~~gR~a~GV~li~L~~gD~Ivsv~~ 782 (941)
|+++++..-.....|+++|..|.++..+.+. +...|--..|+.++.-.+++++++++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEe
Confidence 4888888888888999999999999987654 567788899999999999998887754
No 84
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=26.09 E-value=45 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=31.4
Q ss_pred hhhhhcC--cCCCChhhHHHHHHHhhhcccCceeeeecCCCC
Q 002290 146 VGEVLGK--FHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNF 185 (941)
Q Consensus 146 vG~v~g~--yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnF 185 (941)
||++|.. .+-+-++++.+++-.|.++=...+|++|..|.|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~ 42 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKL 42 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBE
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEE
Confidence 4566652 345778999999999999877789999988765
No 85
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.98 E-value=77 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHH
Q 002290 515 RKKFVDESKTLMEQILKLEELLSSRK 540 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~lL~~~~ 540 (941)
.+.|.+..+.+++.|+.|+.||..+.
T Consensus 44 L~~L~~~A~rm~~RI~tLE~ILDae~ 69 (75)
T PRK09458 44 LAQLTEKAERMRERIQALEAILDAEH 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 35566888999999999999998653
No 86
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=25.77 E-value=1.4e+03 Score=29.72 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCceeEEEEeeCCceEEEEc-cCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccc
Q 002290 620 NDAMSDFIVCRAHDHVLYFS-DRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG 698 (941)
Q Consensus 620 ~D~l~~~~~~~~~d~ll~fT-~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~G 698 (941)
.|...+-..+=++.-++|.+ ..+.=.-...|-+|.. |.+.- .=.|.|+.+|.++++.. ....++++|..|
T Consensus 474 ~d~~~y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~-w~s~s---eWtm~lP~~E~~~~V~~-----t~~~Vav~TS~~ 544 (933)
T KOG1274|consen 474 SDLFGYELADLSEKGTLLASPESESKLGSILYRAHFS-WDSHS---EWTMILPLQESIEAVAA-----TSGWVAVATSLG 544 (933)
T ss_pred eccccceeeeccccceEEecccccCCcceEEEEcccC-ccccc---ceeeecCCCCceeEEEc-----cCcEEEEEeccc
Q ss_pred eEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCC-------cEEEEecccccccCCCCCCeeeeeC
Q 002290 699 YIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNG-------MVILSSCDIIRSLSRNTRGSVAMRL 771 (941)
Q Consensus 699 yiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G-------~vir~~v~eI~~~gR~a~GV~li~L 771 (941)
|+.-... +|++.--+.-...++.+ +.-.|.|++++..| +.+-+.+.+|....+.-.|---+.|
T Consensus 545 ~lRvFt~--------gGvq~~I~t~~gP~vta--ag~~d~L~iv~h~s~~~~~~eq~l~~~l~nIn~~~~~~~~~d~vpl 614 (933)
T KOG1274|consen 545 YLRVFTI--------GGVQREIFTLPGPVVTA--AGFEDSLAIVYHSSKRFYGREQRLEVSLPNINKDSKKQENLDPVPL 614 (933)
T ss_pred eEEEEEe--------cceeeeEeecccceEEe--ecccceEEEEEecCCCCCcccceeEEEeeccChHHHHHhcCCCccc
Q ss_pred CCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeC
Q 002290 772 KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824 (941)
Q Consensus 772 ~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~l 824 (941)
.+|.++..+..-..+..--.+. ..-|.+.+..+-.+.+|+
T Consensus 615 tpg~~L~wigfS~~G~p~i~DS-------------~g~l~vl~~~~~~~WiPI 654 (933)
T KOG1274|consen 615 TPGGQLTWIGFSDEGDPCIYDS-------------EGTLLVLSRWRGNKWIPI 654 (933)
T ss_pred CCCCeeEEEEeccCCCceeecC-------------cceeEeeeccCCCceeEe
No 87
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=25.51 E-value=1.3e+02 Score=26.51 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeee---eeCCCCCeEEEE
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA---MRLKDGDKMASM 780 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l---i~L~~gD~Ivsv 780 (941)
-..|.+.|.+|+-+++|+.-+++- -...|+++ |.++++-+.+++
T Consensus 20 a~~V~v~s~~Gr~v~~Pa~~lRpF-vt~~Gv~G~F~l~~d~~~kf~sl 66 (68)
T PF11197_consen 20 ASKVVVRSDDGRRVQFPARHLRPF-VTHDGVHGRFRLEFDDNNKFVSL 66 (68)
T ss_pred ccEEEEEecCCcEEEEeHHHCcce-ecCCCceEEEEEEECCCCCEEEe
Confidence 357899999999999999998763 22356665 667777777765
No 88
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.14 E-value=2.9e+02 Score=28.63 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q 002290 500 DAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRK 540 (941)
Q Consensus 500 eaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~ 540 (941)
...|+|.+.+||.- +..|++++...+++|+.|..-|.-++
T Consensus 81 l~~ld~~i~~l~ek-~q~l~~t~s~veaEik~L~s~Lt~ee 120 (201)
T KOG4603|consen 81 LQVLDGKIVALTEK-VQSLQQTCSYVEAEIKELSSALTTEE 120 (201)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 45778888888754 77788888888888888888877654
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.08 E-value=5e+02 Score=28.52 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.8
Q ss_pred CHHHHHHH
Q 002290 495 SEKQADAI 502 (941)
Q Consensus 495 s~~qaeaI 502 (941)
++.++++|
T Consensus 87 ~~~e~~aL 94 (239)
T COG1579 87 DERELRAL 94 (239)
T ss_pred cHHHHHHH
Confidence 34455444
No 90
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=24.80 E-value=7.1e+02 Score=29.26 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred eeEEEEeeCCce-----EEEEccCCeEEEEEecccC-CcCccccCcccccccccCCCCeEEEEEec--------------
Q 002290 623 MSDFIVCRAHDH-----VLYFSDRGIVYSARAYKIP-ECTRNAAGTPLVQILSLSDGERITSIIPV-------------- 682 (941)
Q Consensus 623 l~~~~~~~~~d~-----ll~fT~~G~v~~~~~~eIp-~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v-------------- 682 (941)
+.+.+..-..|. +++-|+.|.++.|+. +| ..+|-... ........+..|..+.++
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI--lp~~~g~f~v~---~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI--LPSSNGRFSVQ---FAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE--EE-GGG-EEEE---EEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEE--ecCCCCceEEE---EeeccccCCCceEEEEEEECCCCCcccCchhH
Q ss_pred -----cccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEec------CCCeEEEEecCCcEEEE
Q 002290 683 -----SEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT------NDDLVAMASQNGMVILS 751 (941)
Q Consensus 683 -----~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~------~~d~Ill~T~~G~vir~ 751 (941)
.......+++++|+++ +|-..+-. +..+.|..+...+.....+- ..--|++++.+|.+..+
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~-irv~~~~~-------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESD-IRVFKPPK-------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp HHGGGGT----EEEEEE-SSE-EEEE-TT----------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred hhccccCCCcCcEEEEEcccc-eEEEeCCC-------CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Q ss_pred ecccccccCC
Q 002290 752 SCDIIRSLSR 761 (941)
Q Consensus 752 ~v~eI~~~gR 761 (941)
++-++++..+
T Consensus 288 SLP~Lkei~~ 297 (395)
T PF08596_consen 288 SLPSLKEIKS 297 (395)
T ss_dssp ETTT--EEEE
T ss_pred ECCCchHhhc
No 91
>COG2739 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.71 E-value=3.9e+02 Score=25.50 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHH
Q 002290 423 MGLKEVLQAFLDFRCSVVE--RRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIV 475 (941)
Q Consensus 423 ~~l~eil~~f~~~R~~~~~--rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iI 475 (941)
.|+.||-++|=--|..+|. +|..-.|...++++|+.+......+..|++.+.|
T Consensus 34 lSl~EIAee~~VSRqAIyDnIKr~~~~L~~YE~KL~l~~k~~~R~el~d~lk~~~ 88 (105)
T COG2739 34 LSLSEIAEEFNVSRQAIYDNIKRTEKILEDYEEKLKLYEKYKIRKELYDKLKELI 88 (105)
T ss_pred ccHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999884 7999999999999999988776655555554444
No 92
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=23.22 E-value=84 Score=30.74 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccccCCCCCCCccccccC
Q 002290 527 EQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDADSGQLDDIDIIPN 581 (941)
Q Consensus 527 ~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~~~~~~~~~~~dlI~~ 581 (941)
....-|+.||.|+..+++++...|.++...++.-||.+-....=+.+....+.|.
T Consensus 63 ~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~~~rq~~l~~aYg~~~~~~l~~~ 117 (121)
T PRK10548 63 QLRPMLRQILDNEAELKQLLQQRMDELSSLIGQSTRQKSVNSAYGQLSGFVLLPD 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCccCCC
Confidence 4446789999999999999999999999999999887665432123333334443
No 93
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.18 E-value=1.3e+02 Score=31.81 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHH
Q 002290 511 TMLERKKFVDESKTLMEQILKLEELLSS----RKNILQLIEQEVIELKN 555 (941)
Q Consensus 511 T~le~~kL~~E~~~l~~ei~~l~~lL~~----~~~~~~~i~~EL~elk~ 555 (941)
|..|...|+.|+.+|++++...+.--.+ ...-+.+|+.|++.+-+
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 4567888999999999999999988775 34456889999888754
No 94
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=23.14 E-value=1.1e+03 Score=26.32 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=92.3
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCccccc-ccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGK-LRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~-Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~ 658 (941)
|-.++++..+..|-|--.++++...+.....|+..+- .+..|-.+.-.. -+|.+|+....|.+|-..-.|..+..
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~--f~d~~Lls~gdG~V~gw~W~E~~es~-- 95 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLA--FHDDFLLSGGDGLVYGWEWNEEEESL-- 95 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeee--eehhheeeccCceEEEeeehhhhhhc--
Confidence 4566788889999998888877755443333433222 133333222222 34777777777999988877655531
Q ss_pred ccCcccccc-cc----cCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEE
Q 002290 659 AAGTPLVQI-LS----LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRC 732 (941)
Q Consensus 659 a~G~pl~~~-i~----L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~ 732 (941)
+. .++-.. ++ +.+--+|-+|.... .+..++++--+|.+-..++++ |...+.++. .|++-.+..
T Consensus 96 ~~-K~lwe~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~dlE~-------G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 96 AT-KRLWEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQVDLED-------GRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred cc-hhhhhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEEEecC-------CEEEEEEcCCcceeeeeee
Confidence 00 011111 11 12233555665443 466788888889988888876 555566664 688877665
Q ss_pred ecCCCeEEEEecCCcE
Q 002290 733 CTNDDLVAMASQNGMV 748 (941)
Q Consensus 733 ~~~~d~Ill~T~~G~v 748 (941)
-+...+|+--+++|-+
T Consensus 165 R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTV 180 (325)
T ss_pred cccCcceeecCCCccE
Confidence 5566677777777764
No 95
>PRK02119 hypothetical protein; Provisional
Probab=22.92 E-value=2.9e+02 Score=24.54 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 002290 512 MLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559 (941)
Q Consensus 512 ~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~ 559 (941)
...+..|+..+.-.+..|++|.+.+....+..+.+..+|..+.++..+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777788888888888888888877778888888888887765
No 96
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.80 E-value=6e+02 Score=31.94 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=65.0
Q ss_pred EeeCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccc
Q 002290 628 VCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNL 707 (941)
Q Consensus 628 ~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~ 707 (941)
.-.+.+.+.+.++.|.+|.+.-+- |. ...++-.-++.++.+..++. .+.++...|..|.+-...+..
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~---------~~--~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHT---------GE--MRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred eecCCceEEEecccceEEEEecCc---------hh--hhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhc
Confidence 446889999999999999998431 11 11111111566666666663 456677778888776654443
Q ss_pred ccccccCceEEEecCC--CCeEEEEEEecCCCeEEEEecCCcEEEEeccc
Q 002290 708 FSSIRTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDI 755 (941)
Q Consensus 708 f~~~~r~G~~~ikLk~--gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~e 755 (941)
.+.+.-+..-.+.. ++.+.++.-..+.-.++..-++|++.....+-
T Consensus 108 --~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 --ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111122222333 45555554445566777777788877665543
No 97
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=22.77 E-value=1.4e+02 Score=33.22 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 002290 541 NILQLIEQEVIELKNRFS 558 (941)
Q Consensus 541 ~~~~~i~~EL~elk~kfg 558 (941)
..++.+++||+.||+.|-
T Consensus 326 NQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 326 NQNKALIEELKTLKELYC 343 (348)
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 455788999999999884
No 98
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.78 E-value=8.7e+02 Score=28.86 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=63.9
Q ss_pred EEeeCCceEEEEccCCeEEEEEecccCCcCccc-----------cCcccccccccCCCCeEEEEEeccccCCCcEEEEEe
Q 002290 627 IVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA-----------AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLT 695 (941)
Q Consensus 627 ~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a-----------~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT 695 (941)
.-|...|.++..++...+..++-..+...+... .|..+.--..+.-||.++.+.+++.......++++.
T Consensus 181 ~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg 260 (418)
T PF14727_consen 181 CYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG 260 (418)
T ss_pred EEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe
Confidence 346788888888888777666654444432211 344444444566799999999887433444444444
Q ss_pred --------ccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC---CCeEEEEecCCcEEEEecccc
Q 002290 696 --------MNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN---DDLVAMASQNGMVILSSCDII 756 (941)
Q Consensus 696 --------~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~---~d~Ill~T~~G~vir~~v~eI 756 (941)
.+|.+|-+.--+|... -...+.. ..... ...+++.|.+|.+..+.-.++
T Consensus 261 er~Lf~l~~~G~l~~~krLd~~p~---~~~~Y~~---------~~~~~~~~~~~llV~t~t~~LlVy~d~~L 320 (418)
T PF14727_consen 261 ERSLFCLKDNGSLRFQKRLDYNPS---CFCPYRV---------PWYNEPSTRLNLLVGTHTGTLLVYEDTTL 320 (418)
T ss_pred cceEEEEcCCCeEEEEEecCCcee---eEEEEEe---------ecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence 4444443332233211 0000000 00111 123888888888888876654
No 99
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.59 E-value=1.7e+03 Score=28.24 Aligned_cols=104 Identities=9% Similarity=0.160 Sum_probs=69.9
Q ss_pred CceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccC
Q 002290 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAG 661 (941)
Q Consensus 582 e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G 661 (941)
..+++++...|.++-...+.-.--.+ .+-.++.++.+...+.+...++++|+.-+++-+.+.++...++ -.|
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~-------~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~-ivG 321 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYK-------QRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ-IVG 321 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhh-------hccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehh-hcC
Confidence 34566666677766555443211100 0011144477778888899999999999998887777766542 223
Q ss_pred cccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeec
Q 002290 662 TPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSL 705 (941)
Q Consensus 662 ~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l 705 (941)
-+|+|..|-.+. ++++++.++|..+-+|-...
T Consensus 322 ----------~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~ 353 (775)
T KOG0319|consen 322 ----------YNDEILDMKFLG--PEESHLAVATNSPELRLYTL 353 (775)
T ss_pred ----------CchhheeeeecC--CccceEEEEeCCCceEEEec
Confidence 578899998776 47889999999998888744
No 100
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.34 E-value=1.2e+03 Score=27.00 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=44.7
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccc
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS 886 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~ 886 (941)
++.++++..+|......+.-...-.|. +..+.-.-+++-+++++ ++.+.|-+++..|..
T Consensus 252 G~eVlvVd~~G~tR~~~VGRvKIE~RP---L~lIeAe~~g~~~~viL---------QnaetIrlv~~dG~~--------- 310 (344)
T PRK02290 252 GDEVLVVDADGNTREAIVGRVKIEKRP---LLLIEAEYGGKRIRTIL---------QNAETIRLVTPDGKP--------- 310 (344)
T ss_pred CCEEEEEeCCCCEEEEEeeEEEEeecc---EEEEEEEeCCeEEEEEE---------ecCcEEEEECCCCCE---------
Confidence 578999999999888887766666543 33333332344444443 235566667666542
Q ss_pred cccccCCceEEEEcCCCCeEEE
Q 002290 887 IQARYARGVILMRLELSGKIQS 908 (941)
Q Consensus 887 ~~gR~a~GV~lmkL~~~d~Vvs 908 (941)
+.+..|+.||+|..
T Consensus 311 --------vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 311 --------VSVVDLKPGDEVLG 324 (344)
T ss_pred --------eeeeecCCCCEEEE
Confidence 34556777777653
No 101
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=8.2e+02 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.6
Q ss_pred ccccCCCceeEEEEeeCCceE
Q 002290 615 GKLRVNDAMSDFIVCRAHDHV 635 (941)
Q Consensus 615 ~~Lke~D~l~~~~~~~~~d~l 635 (941)
..|+-||+|+.+..+++.+.+
T Consensus 155 aGl~~gD~il~fGnV~sgn~~ 175 (231)
T KOG3129|consen 155 AGLCVGDEILKFGNVHSGNFL 175 (231)
T ss_pred hCcccCceEEEecccccccch
Confidence 358899999999888776655
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.16 E-value=1.1e+03 Score=29.07 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST 559 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~ 559 (941)
.|.++|..++.+++.+++.|.+-+-+.+...+-..+++....-+|..
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444444334444444443334433
No 103
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.13 E-value=2e+03 Score=28.82 Aligned_cols=199 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCC----------hHHHHHHHHhhcccceeeeeeEEEEE--CC--
Q 002290 353 EKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGAD----------PSIVVNSLYRLTALQSSFSCNMVGIL--DG-- 418 (941)
Q Consensus 353 e~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~----------~~~~~~~L~k~t~Lq~s~~~N~~~l~--~~-- 418 (941)
+++.+.|+.|.-.|..+|.=--..++++|+=.+.+... .+..+..|.++|+.|.. |+..+. |.
T Consensus 77 k~VgeyIK~G~~~g~IEI~l~~~~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~---NLCqFLpQDkV~ 153 (1072)
T KOG0979|consen 77 KKVGEYIKRGEDEGYIEIELKDKDETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQID---NLCQFLPQDKVK 153 (1072)
T ss_pred hHHHHHHhcCCccceEEEEEecCCCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccC---chhhhccHHHHH
Q ss_pred -------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHH
Q 002290 419 -------------QPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTAS 485 (941)
Q Consensus 419 -------------~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~ 485 (941)
.-+-.+..++++++.+.+. .+++.+-....+...-..++-+-..++.+..-|+..|+.....+-.
T Consensus 154 EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~--lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~I 231 (1072)
T KOG0979|consen 154 EFARLSPIELLVETEKAIGAEELLQYHIELMD--LREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKI 231 (1072)
T ss_pred HHHcCChHHHHHHHHHhcCchhhHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH---HHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 002290 486 AAL---KDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556 (941)
Q Consensus 486 ~~L---~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~k 556 (941)
+-| +....+-.-.-+|-.-+.-+..-+.+..+|.++...+...+++|+...++-..-..-...++.+...+
T Consensus 232 e~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k 305 (1072)
T KOG0979|consen 232 ELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAK 305 (1072)
T ss_pred HHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHH
No 104
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=21.03 E-value=91 Score=34.27 Aligned_cols=42 Identities=33% Similarity=0.580 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHHHcC-----CCCCHHHHhccCCCCCCCCceEEe
Q 002290 260 PPHNLGELVDVLCALIHN-----PEATLQELLEYMPGPDFPTGGLIM 301 (941)
Q Consensus 260 PphN~~evi~~~~~~i~~-----~~~~~~~l~~~~~~PdfptGg~i~ 301 (941)
|.-+|.++++++.+.+.. ++-+++=+..-||.|.||.||-|.
T Consensus 57 P~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~gfp~GGHiH 103 (261)
T PF14395_consen 57 PSPDPAELFENIRRALREAARRIPDRSLEWLAGSMPFPGFPLGGHIH 103 (261)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCCCCCcCCeEE
Confidence 778999999999988752 333444456778999999997653
No 105
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.90 E-value=2.3e+02 Score=28.84 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002290 514 ERKKFVDESKTLMEQILKLEE 534 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~ 534 (941)
+++.+..++.+..++|+.|+.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444
No 106
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.75 E-value=64 Score=26.54 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=24.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCccccc
Q 002290 530 LKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSML 565 (941)
Q Consensus 530 ~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I 565 (941)
++|+.-|+ .+...+..||.+++++|...|.-.+
T Consensus 11 ~eL~~rl~---~LD~~ME~Eieelr~RY~~KRqPIl 43 (49)
T PF11629_consen 11 EELQQRLA---SLDPEMEQEIEELRQRYQAKRQPIL 43 (49)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHHHhhccHH
Confidence 34455554 4567789999999999988887554
No 107
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.69 E-value=3.4e+02 Score=29.13 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCceEEEEccCCeEEEEEec
Q 002290 631 AHDHVLYFSDRGIVYSARAY 650 (941)
Q Consensus 631 ~~d~ll~fT~~G~v~~~~~~ 650 (941)
..++++++|..|.+|.-++.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCCEEEEEeCCCeEEEEECC
Confidence 45669999999999965543
No 108
>PLN03128 DNA topoisomerase 2; Provisional
Probab=20.51 E-value=2.5e+02 Score=37.49 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002290 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIM 462 (941)
Q Consensus 430 ~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli 462 (941)
.+++.-|.++..++.++++.+++.+.+++++.+
T Consensus 989 ~~~y~kRk~~~l~~~~~~~~~l~~k~~fi~~v~ 1021 (1135)
T PLN03128 989 LDLYVKRKEVLLENLEYELKKLDNKARFILAVV 1021 (1135)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhHHHhhee
Confidence 345566666666666666666666666655443
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.41 E-value=1.2e+03 Score=26.00 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~ 560 (941)
+...+.+|-++|++++.+|+.-+. ...+.+++|.++|++..+-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~---~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE---ILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCc
Confidence 456677888888888887744333 22344788888888877654
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.34 E-value=1.3e+03 Score=27.87 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHhhc-ChHHHHHHHhcCCChHHHHHHHHHHhC-CCHH
Q 002290 430 QAFLDFRCSVVER----------RARFKLSQVKERRHIVEGIMVGLD-NLDRVIRIVREAPSNSTASAALKDEFK-LSEK 497 (941)
Q Consensus 430 ~~f~~~R~~~~~r----------R~~~~L~k~~~r~~ilegli~~~~-~iD~vI~iIr~s~~~~~a~~~L~~~f~-~s~~ 497 (941)
+-|+++-++-|.+ --+-.-...++.-|++...+.++. ..|.+++.|+++..-.++++.|.+++. +..+
T Consensus 231 k~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D 310 (622)
T COG5185 231 KLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSD 310 (622)
T ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHhc-----cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002290 498 QADAILDM-----NLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQE 549 (941)
Q Consensus 498 qaeaIL~M-----~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~E 549 (941)
.-.|+-.| ..+..++. +.+|+.|+++.+++|+.|+. +.+.+...+.+.
T Consensus 311 ~nk~~~~~~~mk~K~~~~~g~-l~kl~~eie~kEeei~~L~~---~~d~L~~q~~kq 363 (622)
T COG5185 311 SNKYENYVNAMKQKSQEWPGK-LEKLKSEIELKEEEIKALQS---NIDELHKQLRKQ 363 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHhc
No 111
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.26 E-value=2.3e+02 Score=32.55 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSS--RKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~--~~~~~~~i~~EL~elk~kfg 558 (941)
++...-.+++.++++++..+.+|++ ...+..+.++|+.+++++..
T Consensus 47 ~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~ 93 (363)
T COG0216 47 PIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIE 93 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 4556667899999999999999996 56799999999999988765
No 112
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=20.08 E-value=1.4e+02 Score=27.36 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002290 494 LSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEEL 535 (941)
Q Consensus 494 ~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~l 535 (941)
++.++.++|..+.--+|+.+|.+++.+++..+..-++.|+++
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~v 42 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEV 42 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356788888888888999999999999999998888888876
No 113
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=20.06 E-value=5.3e+02 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=19.0
Q ss_pred hCCCHHHHHHHHhccHHHhhH--HHHHHHHHHHHHHHHHHH
Q 002290 492 FKLSEKQADAILDMNLRRLTM--LERKKFVDESKTLMEQIL 530 (941)
Q Consensus 492 f~~s~~qaeaIL~M~L~rLT~--le~~kL~~E~~~l~~ei~ 530 (941)
+.+..+|...-|+-.|.-+.. .|+.|.++|.++.++.++
T Consensus 61 LeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~K 101 (158)
T PF03112_consen 61 LEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIK 101 (158)
T ss_pred hhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 345566777766655543332 334444444444433333
Done!