Query 002290
Match_columns 941
No_of_seqs 365 out of 2337
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvu_A Topoisomerase IV subuni 100.0 2E-185 6E-190 1621.2 63.3 685 106-837 1-700 (716)
2 2inr_A DNA topoisomerase 4 sub 100.0 6E-160 2E-164 1364.4 37.8 485 81-568 25-509 (514)
3 2nov_A DNA topoisomerase 4 sub 100.0 4E-160 1E-164 1363.7 33.5 484 83-569 3-486 (496)
4 3ilw_A DNA gyrase subunit A; D 100.0 3E-156 1E-160 1320.0 43.1 463 101-566 2-469 (470)
5 3lpx_A GYRA, DNA gyrase, A sub 100.0 4E-156 1E-160 1314.4 42.2 459 107-567 1-493 (500)
6 2xcs_B DNA gyrase subunit B, D 100.0 8E-155 3E-159 1357.2 45.4 483 82-567 208-691 (692)
7 2xkj_E Topoisomerase IV; type 100.0 2E-150 5E-155 1335.2 43.9 491 82-583 271-767 (767)
8 3l4j_A DNA topoisomerase 2; to 100.0 3E-116 1E-120 1030.3 28.3 442 80-558 243-747 (757)
9 3qx3_A DNA topoisomerase 2-bet 100.0 2E-113 8E-118 1006.6 29.5 441 82-558 286-774 (803)
10 4gfh_A DNA topoisomerase 2; to 100.0 7E-113 3E-117 1069.7 26.9 448 79-558 662-1167(1177)
11 3l6v_A GYRA, DNA gyrase subuni 100.0 3.5E-61 1.2E-65 543.5 34.3 333 576-916 1-348 (370)
12 3uc1_A DNA gyrase subunit A; D 100.0 1E-58 3.5E-63 516.0 30.3 305 581-914 2-309 (327)
13 1zi0_A DNA gyrase subunit A; b 100.0 3.4E-57 1.2E-61 500.2 33.8 305 580-913 1-306 (307)
14 1wp5_A Topoisomerase IV; broke 100.0 1.1E-55 3.8E-60 491.0 31.1 304 578-914 1-307 (323)
15 1suu_A DNA gyrase subunit A; t 100.0 3.5E-54 1.2E-58 477.2 34.7 307 576-912 2-310 (312)
16 3no0_A DNA gyrase subunit A; D 100.0 1.2E-47 4E-52 418.0 30.6 272 583-914 2-275 (276)
17 1zvt_A Topoisomerase IV subuni 100.0 6.4E-37 2.2E-41 329.8 22.0 219 581-837 1-230 (256)
18 3uc1_A DNA gyrase subunit A; D 100.0 3.3E-35 1.1E-39 327.0 23.0 211 580-818 107-322 (327)
19 3l6v_A GYRA, DNA gyrase subuni 100.0 3.4E-33 1.2E-37 315.3 23.8 201 686-914 5-210 (370)
20 1zi0_A DNA gyrase subunit A; b 100.0 3.2E-32 1.1E-36 300.7 22.8 198 687-912 2-204 (307)
21 3no0_A DNA gyrase subunit A; D 100.0 6.9E-32 2.3E-36 293.8 22.9 195 581-785 79-275 (276)
22 1wp5_A Topoisomerase IV; broke 100.0 8E-32 2.7E-36 299.4 21.8 197 687-913 4-203 (323)
23 1suu_A DNA gyrase subunit A; t 100.0 1.3E-31 4.5E-36 296.5 22.8 199 687-913 7-210 (312)
24 1zvt_A Topoisomerase IV subuni 100.0 1.7E-29 5.9E-34 271.9 18.0 188 687-913 1-197 (256)
25 3ku8_A GYRA14, DNA gyrase subu 99.9 6E-26 2.1E-30 223.4 9.2 108 433-540 14-155 (156)
26 1zvu_A Topoisomerase IV subuni 99.9 2.6E-23 8.8E-28 245.8 15.9 188 687-913 471-667 (716)
27 1gxr_A ESG1, transducin-like e 93.2 8.7 0.0003 39.6 30.0 228 578-881 105-334 (337)
28 1r5m_A SIR4-interacting protei 92.5 13 0.00044 39.7 24.1 192 578-828 157-363 (425)
29 4aez_A CDC20, WD repeat-contai 88.5 31 0.001 37.4 26.4 232 578-884 142-380 (401)
30 1sq9_A Antiviral protein SKI8; 87.5 32 0.0011 36.5 27.2 196 583-826 82-322 (397)
31 3hxj_A Pyrrolo-quinoline quino 85.7 8.3 0.00029 40.2 13.6 61 807-885 265-325 (330)
32 1gxr_A ESG1, transducin-like e 85.6 35 0.0012 35.0 34.6 239 573-884 54-296 (337)
33 3zwl_B Eukaryotic translation 83.6 44 0.0015 34.6 30.7 161 576-754 80-248 (369)
34 4aow_A Guanine nucleotide-bind 82.9 46 0.0016 34.2 27.0 190 578-825 94-285 (340)
35 3odt_A Protein DOA1; ubiquitin 82.5 44 0.0015 33.8 31.5 256 572-907 20-281 (313)
36 3gre_A Serine/threonine-protei 79.0 76 0.0026 34.3 21.2 217 573-825 66-291 (437)
37 1p22_A F-BOX/WD-repeat protein 78.2 83 0.0028 34.3 24.1 99 687-826 265-365 (435)
38 1t3j_A Mitofusin 1; coiled coi 77.2 5.8 0.0002 35.8 7.0 51 507-557 41-94 (96)
39 3hxj_A Pyrrolo-quinoline quino 75.7 14 0.00048 38.4 11.0 22 807-828 305-326 (330)
40 1k8k_C P40, ARP2/3 complex 41 74.4 86 0.0029 32.6 32.4 249 573-884 11-274 (372)
41 2pbi_B Guanine nucleotide-bind 73.3 1E+02 0.0034 32.8 31.8 202 572-826 66-271 (354)
42 3odt_A Protein DOA1; ubiquitin 73.0 82 0.0028 31.7 28.5 232 575-884 64-296 (313)
43 4h5i_A Guanine nucleotide-exch 71.8 1.1E+02 0.0038 32.7 23.6 191 580-825 143-342 (365)
44 2xzh_A Clathrin heavy chain 1; 71.4 47 0.0016 36.8 13.8 75 672-756 258-333 (365)
45 1r5m_A SIR4-interacting protei 71.3 1.1E+02 0.0037 32.3 29.9 242 572-884 47-319 (425)
46 3bws_A Protein LP49; two-domai 71.0 1.2E+02 0.004 32.6 28.6 103 580-706 179-291 (433)
47 1bpo_A Protein (clathrin); cla 68.4 69 0.0023 36.8 14.7 75 672-756 257-332 (494)
48 3gre_A Serine/threonine-protei 67.8 1.4E+02 0.0047 32.2 22.8 167 621-826 64-245 (437)
49 1vyh_C Platelet-activating fac 64.5 1.6E+02 0.0056 31.9 30.9 252 574-883 112-368 (410)
50 4a11_B DNA excision repair pro 58.9 1.8E+02 0.006 30.4 29.5 163 572-754 45-217 (408)
51 3v7d_B Cell division control p 58.1 2.1E+02 0.0071 31.0 30.2 235 579-884 129-381 (464)
52 3sfz_A APAF-1, apoptotic pepti 57.0 3.7E+02 0.013 33.6 23.2 61 687-754 851-912 (1249)
53 3ei3_B DNA damage-binding prot 56.9 1.9E+02 0.0067 30.3 23.8 203 573-829 76-285 (383)
54 3mkq_A Coatomer beta'-subunit; 56.8 2.9E+02 0.01 32.3 31.9 196 575-825 18-216 (814)
55 3dwl_C Actin-related protein 2 54.1 2.1E+02 0.0072 29.8 22.0 212 573-826 14-236 (377)
56 1sq9_A Antiviral protein SKI8; 52.5 2.2E+02 0.0077 29.7 28.7 205 583-826 27-267 (397)
57 1got_B GT-beta; complex (GTP-b 47.3 2.7E+02 0.0091 29.0 36.2 246 513-826 2-257 (340)
58 4d9s_A UVB-resistance protein 46.6 3.3E+02 0.011 29.9 26.7 214 629-882 127-355 (406)
59 1k8k_C P40, ARP2/3 complex 41 46.0 2.7E+02 0.0091 28.7 28.8 233 622-907 10-259 (372)
60 3frx_A Guanine nucleotide-bind 44.7 2.8E+02 0.0096 28.6 25.6 173 576-785 71-248 (319)
61 1zxa_A CGMP-dependent protein 42.9 19 0.00064 30.4 3.4 40 515-554 13-52 (67)
62 3zwl_B Eukaryotic translation 41.6 3E+02 0.01 28.0 33.0 202 572-826 34-249 (369)
63 1yfq_A Cell cycle arrest prote 40.9 3E+02 0.01 27.9 24.5 204 576-826 62-282 (342)
64 3m48_A General control protein 39.4 42 0.0014 24.2 4.2 26 513-538 7-32 (33)
65 3oja_B Anopheles plasmodium-re 38.3 1.8E+02 0.0063 33.6 12.5 42 514-555 531-572 (597)
66 3ow8_A WD repeat-containing pr 37.5 3.7E+02 0.013 27.9 28.0 225 579-881 89-318 (321)
67 3mkq_A Coatomer beta'-subunit; 37.2 5.6E+02 0.019 29.9 28.6 155 623-826 16-172 (814)
68 1pgu_A Actin interacting prote 36.7 4.8E+02 0.016 29.0 28.4 199 573-826 67-283 (615)
69 1l0q_A Surface layer protein; 35.9 4E+02 0.014 27.8 28.9 237 580-894 41-285 (391)
70 2wq1_A General control protein 35.6 55 0.0019 23.5 4.3 26 513-538 7-32 (33)
71 3twe_A Alpha4H; unknown functi 35.1 52 0.0018 21.9 3.8 23 515-537 3-25 (27)
72 3k26_A Polycomb protein EED; W 34.6 3.8E+02 0.013 27.2 24.5 106 582-708 85-193 (366)
73 3of7_A Regulator of chromosome 34.1 5.4E+02 0.018 28.8 29.2 226 620-888 147-409 (473)
74 3jrp_A Fusion protein of prote 34.1 4E+02 0.014 27.2 26.1 204 577-826 18-240 (379)
75 3okq_A BUD site selection prot 34.0 2.8E+02 0.0096 26.6 10.4 40 516-555 57-97 (141)
76 1xi4_A Clathrin heavy chain; a 32.6 1.5E+02 0.005 39.1 10.7 75 673-757 258-333 (1630)
77 2oxj_A Hybrid alpha/beta pepti 32.4 66 0.0023 23.3 4.3 25 514-538 9-33 (34)
78 3jro_A Fusion protein of prote 31.9 7E+02 0.024 29.4 23.4 224 580-852 19-272 (753)
79 3dwl_C Actin-related protein 2 31.8 4.5E+02 0.015 27.2 22.4 121 673-825 55-176 (377)
80 1uo4_A General control protein 31.0 69 0.0024 23.2 4.2 26 513-538 8-33 (34)
81 3c3g_A Alpha/beta peptide with 30.9 68 0.0023 23.1 4.1 26 513-538 7-32 (33)
82 2lw1_A ABC transporter ATP-bin 30.6 85 0.0029 27.5 5.9 27 514-540 23-49 (89)
83 3c3f_A Alpha/beta peptide with 30.1 72 0.0024 23.1 4.1 26 513-538 8-33 (34)
84 3he5_A Synzip1; heterodimeric 29.9 1.4E+02 0.0049 22.4 5.9 42 516-557 6-47 (49)
85 3v7d_B Cell division control p 29.9 5.5E+02 0.019 27.5 32.1 191 583-826 174-381 (464)
86 2ovr_B FBW7, F-BOX/WD repeat p 29.8 5.5E+02 0.019 27.5 27.6 222 580-884 127-348 (445)
87 3kci_A Probable E3 ubiquitin-p 29.7 5.6E+02 0.019 27.7 33.9 272 579-888 59-349 (389)
88 3a7p_A Autophagy protein 16; c 29.6 86 0.0029 30.5 6.1 45 514-558 69-113 (152)
89 3gp4_A Transcriptional regulat 29.1 2.4E+02 0.0083 26.6 9.4 47 491-537 57-105 (142)
90 4dzn_A Coiled-coil peptide CC- 28.7 60 0.0021 22.5 3.5 20 514-533 3-22 (33)
91 1bpo_A Protein (clathrin); cla 28.0 6.1E+02 0.021 29.1 13.7 63 807-886 270-333 (494)
92 3q7m_A Lipoprotein YFGL, BAMB; 27.9 5.4E+02 0.019 26.9 19.8 62 580-650 51-121 (376)
93 2aq5_A Coronin-1A; WD40 repeat 27.7 5.6E+02 0.019 27.0 22.4 203 580-826 91-299 (402)
94 3nmd_A CGMP dependent protein 27.6 88 0.003 26.7 5.1 36 516-551 29-64 (72)
95 4aez_A CDC20, WD repeat-contai 27.5 5.7E+02 0.019 27.0 31.4 145 581-754 102-247 (401)
96 4ery_A WD repeat-containing pr 27.1 4.9E+02 0.017 26.1 27.4 112 675-826 67-180 (312)
97 4ery_A WD repeat-containing pr 26.8 5E+02 0.017 26.1 31.7 194 573-826 26-223 (312)
98 3mmy_A MRNA export factor; mRN 26.5 5.1E+02 0.018 26.1 23.3 222 580-852 96-333 (368)
99 2xzh_A Clathrin heavy chain 1; 25.6 7.1E+02 0.024 27.5 14.3 62 807-885 271-333 (365)
100 3ei3_B DNA damage-binding prot 25.3 5.9E+02 0.02 26.4 27.6 190 633-884 87-282 (383)
101 2wt7_B Transcription factor MA 25.2 1.3E+02 0.0044 26.8 6.0 38 514-558 49-86 (90)
102 3hnw_A Uncharacterized protein 24.8 1.3E+02 0.0044 28.7 6.5 10 465-474 64-73 (138)
103 3l4j_A DNA topoisomerase 2; to 24.5 3.2E+02 0.011 33.2 11.0 48 430-477 582-634 (757)
104 3vl1_A 26S proteasome regulato 24.1 6.4E+02 0.022 26.4 30.3 255 580-909 66-352 (420)
105 2r2v_A GCN4 leucine zipper; co 23.0 1.4E+02 0.0047 21.7 4.5 26 513-538 8-33 (34)
106 3sfz_A APAF-1, apoptotic pepti 22.8 1.2E+03 0.04 29.0 29.6 148 578-753 623-772 (1249)
107 2pm9_A Protein WEB1, protein t 22.4 6.7E+02 0.023 26.0 22.7 236 580-884 22-294 (416)
108 1q08_A Zn(II)-responsive regul 22.3 1.8E+02 0.006 25.3 6.6 47 490-536 13-62 (99)
109 1yfq_A Cell cycle arrest prote 22.1 6.1E+02 0.021 25.5 29.0 277 575-909 16-310 (342)
110 3k26_A Polycomb protein EED; W 21.7 6.3E+02 0.022 25.5 21.2 119 672-827 68-193 (366)
111 2bni_A General control protein 21.6 1.1E+02 0.0038 22.2 3.8 26 513-538 8-33 (34)
112 1kd8_A GABH AIV, GCN4 acid bas 21.5 83 0.0029 23.1 3.2 26 513-538 8-33 (36)
113 3q7m_A Lipoprotein YFGL, BAMB; 21.1 7.2E+02 0.025 25.9 18.6 58 807-881 318-375 (376)
114 3h3m_A Flagellar protein FLIT; 20.8 93 0.0032 29.3 4.5 42 525-566 74-115 (126)
115 3kci_A Probable E3 ubiquitin-p 20.8 8E+02 0.028 26.4 28.1 264 577-885 5-294 (389)
116 1vyh_C Platelet-activating fac 20.7 7.9E+02 0.027 26.2 26.7 187 580-826 160-369 (410)
117 2hy6_A General control protein 20.7 1.3E+02 0.0043 21.9 4.0 26 513-538 8-33 (34)
118 3md3_A Nuclear and cytoplasmic 20.6 2E+02 0.0067 26.4 7.0 93 336-432 2-108 (166)
119 3nkz_A Flagellar protein FLIT; 20.3 2.4E+02 0.0081 26.3 7.2 43 526-568 65-107 (123)
No 1
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=1.8e-185 Score=1621.21 Aligned_cols=685 Identities=35% Similarity=0.583 Sum_probs=626.6
Q ss_pred cccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCC
Q 002290 106 LGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNF 185 (941)
Q Consensus 106 ~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnF 185 (941)
++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+|||||||||+||||||||||||||
T Consensus 1 ~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~fs~r~pLldg~GNF 80 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred CCCCCCchhcCCChHHHHHHHHHhhhCCcCCCCceeeHHHHHHHHHhcCCccHHHHHHHHHHHhhcccccceeeecCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc-cccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCCh
Q 002290 186 GSIDADPA-AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNL 264 (941)
Q Consensus 186 Gs~~gd~a-AA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~ 264 (941)
||++||+| |||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|||||||||+|||||||||||||||
T Consensus 81 GS~dgd~a~AA~RYte~rLs~ia~~l-l~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl 159 (716)
T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 159 (716)
T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHH-HTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCH
T ss_pred CCCCCCccccccCceEEcchHHHHHH-HhhcCccccccccCCCCCcCCchhccccccHHHHcCCCccccceecCCCCCCH
Confidence 99999999 99999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEec-chhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeec
Q 002290 265 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG-NLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIP 343 (941)
Q Consensus 265 ~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~-~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP 343 (941)
+|||+||+++|+||+++++||++++|||||||||+|.+ .+|+.++|+||+|+|++||+|++++ ++|+|||||
T Consensus 160 ~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~gI~~aY~tGrG~i~~rg~~~ie~-------~~ivITElP 232 (716)
T 1zvu_A 160 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-------GAVVISALP 232 (716)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-------TEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCceEEecCchHHHHHhhcCCceEEEEEEEEEEC-------CEEEEEeCC
Confidence 99999999999999999999999999999999999985 8999999999999999999999972 579999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccccccCCC-CceEEEEEeCC-CCChHHHHHHHHhhcccceeeeeeEEEE-ECCcc
Q 002290 344 YQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELKR-GADPSIVVNSLYRLTALQSSFSCNMVGI-LDGQP 420 (941)
Q Consensus 344 ~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~-~girivi~lk~-~~~~~~~~~~L~k~t~Lq~s~~~N~~~l-~~~~p 420 (941)
|++|+++|+|+|++++++|++++|+|+||||++ +|+||+|++|+ +++++.++++|||+|+||++|++||++| .||+|
T Consensus 233 y~v~~~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p 312 (716)
T 1zvu_A 233 HQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP 312 (716)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCE
T ss_pred CCCCHHHHHHHHHHHHhcCCCccccchhhccCCCCcEEEEEEECccCCCHHHHHHHHHHhcchhheeeceeEEEccCCee
Confidence 999999999999999999999999999999998 59999999998 6999999999999999999999999999 69999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCCHHHHH
Q 002290 421 KQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLSEKQAD 500 (941)
Q Consensus 421 k~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s~~qae 500 (941)
+++|+++||++|++||+++|+||++|+|+|+++|+|+|+|+++++++||+||++||.|+++ ++.|++.|++|+.||+
T Consensus 313 ~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~---k~~L~~~f~lse~QA~ 389 (716)
T 1zvu_A 313 AVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAE 389 (716)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH---HHHHHHSTTCCTTHHH
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch---HHHHHHhcCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999984 7899999999999999
Q ss_pred HHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccccC-CCCCCCccccc
Q 002290 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA-DSGQLDDIDII 579 (941)
Q Consensus 501 aIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~~~-~~~~~~~~dlI 579 (941)
|||+|||||||++|++||++|+++|+++|++|+++|+|+++++++|++||.+++++||+||||+|... +..+++.+|+|
T Consensus 390 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT~I~~~~~~~~~~~edli 469 (716)
T 1zvu_A 390 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 469 (716)
T ss_dssp HHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCBCCCCCCCCCCSSTTS
T ss_pred HHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccccccccccchhcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999852 33578889999
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
++++++|++|++|||||+.. .+.|..+++++++|.+.+++.|++||+|+|||+.|++|++++|+||+. ++
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g--------~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~--~~ 539 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKG--------HDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RG 539 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC--C-
T ss_pred CCceEEEEEecCCeEeccCC--------CCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccc--cc
Confidence 99999999999999999632 223447788999999999999999999999999999999999999997 58
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEe-cCCCe
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDL 738 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~-~~~d~ 738 (941)
+|+|++++++|++||+|++++++. ++.+++++|++|++||+++++|...+++|+.+++|++||+|+++..+ +++++
T Consensus 540 ~G~~i~~ll~l~~~e~i~~~~~~~---~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~ 616 (716)
T 1zvu_A 540 QGEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 616 (716)
T ss_dssp --CBSTTTSCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCE
T ss_pred cCeeHHhccCCCCCCeEEEEEEec---CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCE
Confidence 999999999999999999999886 57799999999999999999999998899999999999999999888 67889
Q ss_pred EEEEecCCcEEEEecccccccCCCCCCeeeeeCC------CCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEE
Q 002290 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK------DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLF 812 (941)
Q Consensus 739 Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~------~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 812 (941)
|+++|++|+++||+++++|.+|| ++||++|+|+ +||+|+++.++.+ +..+++
T Consensus 617 v~l~t~~g~~lrf~~~~v~~~gr-~~GV~~i~l~~~~~k~~~d~v~~~~~~~~---------------------~~~l~~ 674 (716)
T 1zvu_A 617 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP---------------------QSTLTI 674 (716)
T ss_dssp EEEEETTSEEEEEESTTSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEECS---------------------SCCEEE
T ss_pred EEEEeCCCeEEEEEHHHCCccCc-ccCeEEEEecccccCCCCCEEEEEEEecC---------------------CCeEEE
Confidence 99999999999999999999999 9999999999 9999999987743 245777
Q ss_pred EecCcc--EEEEeCCCccccCCCccee
Q 002290 813 VSESGH--GKRVPLSSFRKLPLNRVGL 837 (941)
Q Consensus 813 vTe~G~--gKR~~lse~~~~~R~~kGv 837 (941)
++.+|+ +|+.++++|+ ++|+++|+
T Consensus 675 ~~gk~~~~~k~~~~~~~~-~~Rg~~G~ 700 (716)
T 1zvu_A 675 HVGKRKIKLRPEELQKVT-GERGRRGT 700 (716)
T ss_dssp EETTEEEEECHHHHTTSB-CCTTSCCE
T ss_pred EECCcccccccchhhHhc-cCCCCCCC
Confidence 777776 6677999997 88999998
No 2
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=6.4e-160 Score=1364.42 Aligned_cols=485 Identities=45% Similarity=0.800 Sum_probs=433.3
Q ss_pred CCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhh
Q 002290 81 SPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNA 160 (941)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s 160 (941)
.++|.+++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|
T Consensus 25 ~~~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~S 104 (514)
T 2inr_A 25 SEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSS 104 (514)
T ss_dssp ----------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC---CH
T ss_pred cccceeccHHHHHHHHHHHHHHHHhhcccCCchhhCCCcchhhHHHHHHHhCCCCCCCceeeeeeHhhHHhcCCCccHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccc
Q 002290 161 VYDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240 (941)
Q Consensus 161 ~y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~i 240 (941)
+||||||||||||||||||||||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|
T Consensus 105 iydaiVrMAQdfs~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~l-l~did~~tvdf~~nyDg~~~EP~vlp~~i 183 (514)
T 2inr_A 105 VYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL-LRDINKETVSFIPNYDDTTLEPMVLPSRF 183 (514)
T ss_dssp HHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHH-STTTTSSCSCEEECTTSSSEEESSCCCSS
T ss_pred HHHHHHHHhhhhhhCceeEecCCCCCCCCCCCCCCcCCeEEechHHHHHH-HhhcCcccccCCcCCCCCcCCCcccCccc
Confidence 99999999999999999999999999999999999999999999999996 68999999999999999999999999999
Q ss_pred ceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEE
Q 002290 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVR 320 (941)
Q Consensus 241 P~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~r 320 (941)
||||||||+|||||||||||||||+|||+||+++|+||++++++|++++|||||||||+|.|.+|++++|+||+|+|++|
T Consensus 184 P~lLvNGs~GIavGmATnIPphNl~Evi~a~~~li~~~~~~~~~l~~~i~GPDFPtGgii~~~~gi~~~y~tGrG~i~~r 263 (514)
T 2inr_A 184 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVR 263 (514)
T ss_dssp CHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEEEEE
T ss_pred cHHHhcCCCceecceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCcCCCCCCCcEEECchhhHHHhhcCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHh
Q 002290 321 GKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYR 400 (941)
Q Consensus 321 g~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k 400 (941)
|+|++++.. .++++|+||||||++||++|+|+|++++++|+++||+|+||+||++|+||||+||++++++.++++|||
T Consensus 264 g~~~ie~~~--~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L~k 341 (514)
T 2inr_A 264 SKVEEETLR--NGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYK 341 (514)
T ss_dssp CEEEECC------CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTT
T ss_pred EEEEEEecC--CCccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHHHH
Confidence 999997532 346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCC
Q 002290 401 LTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPS 480 (941)
Q Consensus 401 ~t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~ 480 (941)
+|+||++|++||++|.||+|+++|+++||++|++||+++|+||++|+|+++++|+|+++|++++++++|++|++||++++
T Consensus 342 ~t~Lq~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~ 421 (514)
T 2inr_A 342 NSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKN 421 (514)
T ss_dssp SSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCS
T ss_pred hcCceeeeeeeEEEeeCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 002290 481 NSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560 (941)
Q Consensus 481 ~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~ 560 (941)
+++|++.|++.|++++.||+|||+||||+||++|++||++|+++++++|++|+.+|+|+.+++++|++||.+++++||+|
T Consensus 422 ~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 422 KRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 002290 561 RLSMLEDA 568 (941)
Q Consensus 561 RRT~I~~~ 568 (941)
|||+|..+
T Consensus 502 RrT~i~~~ 509 (514)
T 2inr_A 502 RLSLIEAE 509 (514)
T ss_dssp CCCEEESS
T ss_pred CCcccccc
Confidence 99999764
No 3
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=100.00 E-value=3.9e-160 Score=1363.70 Aligned_cols=484 Identities=43% Similarity=0.766 Sum_probs=433.4
Q ss_pred CceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHH
Q 002290 83 RIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVY 162 (941)
Q Consensus 83 ~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y 162 (941)
+|.+++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|
T Consensus 3 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~Siy 82 (496)
T 2nov_A 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIY 82 (496)
T ss_dssp --------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTTH
T ss_pred CceeccHHHHHHHHHHHHHHHHHhcccCCchhcCCCcchhHHHHHHHHhCCCCCCCceeeeeeHhhHHhcCCCccHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccce
Q 002290 163 DSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPT 242 (941)
Q Consensus 163 ~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~ 242 (941)
|||||||||||||||||||||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|||
T Consensus 83 daiVrMAQdfs~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~l-l~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~ 161 (496)
T 2nov_A 83 DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYL-LQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 161 (496)
T ss_dssp HHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTT-STTCCCCCSCEEECSSSSSEEESSCCCSSCH
T ss_pred HHHHHHhhhhhcCceeecCCCCCCCCCCCcccccCceEEechHHHHHH-hhhcccccccCCcCCCCCcCCCeecCccCcH
Confidence 999999999999999999999999999999999999999999999996 6899999999999999999999999999999
Q ss_pred eeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEE
Q 002290 243 LLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGK 322 (941)
Q Consensus 243 lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~ 322 (941)
||||||+|||||||||||||||+|||+||+++|+||++++++|++++|||||||||+|.|.+|++++|+||+|+|++||+
T Consensus 162 lLvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPtGgii~~~~gi~~~y~tGrG~~~~rg~ 241 (496)
T 2nov_A 162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241 (496)
T ss_dssp HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCEECE
T ss_pred HHhcCCCchhcccccCCCCCCHHHHHHHHHHHhcCCCCChHHHHhhccCCCCCCCCEEeCchHHHHHhhcCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhc
Q 002290 323 TEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLT 402 (941)
Q Consensus 323 ~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t 402 (941)
|+++... +++++|+||||||++||++|+|+|++++++|+++||+|++|+||++|+||||+||++++++.++++|||+|
T Consensus 242 ~~ie~~~--~g~~~IvITElPy~v~~~~lie~I~~lv~~kki~~I~d~rDesd~~gvrivI~lk~~~~~~~vl~~L~k~t 319 (496)
T 2nov_A 242 TEIEKLK--GGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 319 (496)
T ss_dssp EEEEECS--TTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSS
T ss_pred EEEEecC--CCCCEEEEEeCCCCCcHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 9998643 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChH
Q 002290 403 ALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNS 482 (941)
Q Consensus 403 ~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~ 482 (941)
+||++|++||++|.||+|+++|+++||++|++||+++|+||++|+|+++++|+|+++|++++++++|++|++||++++++
T Consensus 320 ~Lq~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~ 399 (496)
T 2nov_A 320 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKA 399 (496)
T ss_dssp TTEECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHH
T ss_pred CcceeeeeEEEEEeCCeEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcc
Q 002290 483 TASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRL 562 (941)
Q Consensus 483 ~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RR 562 (941)
+|++.|++.|++++.||+|||+||||+||++|++||++|+++|+++|++|+.+|+|+.+++++|++||.+++++||+|||
T Consensus 400 ~a~~~L~~~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~Rr 479 (496)
T 2nov_A 400 DAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRL 479 (496)
T ss_dssp HHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 002290 563 SMLEDAD 569 (941)
Q Consensus 563 T~I~~~~ 569 (941)
|+|....
T Consensus 480 T~i~~~~ 486 (496)
T 2nov_A 480 SSLEDTA 486 (496)
T ss_dssp SBC----
T ss_pred ceeecch
Confidence 9997643
No 4
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=100.00 E-value=2.9e-156 Score=1319.98 Aligned_cols=463 Identities=48% Similarity=0.829 Sum_probs=450.8
Q ss_pred HhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeee
Q 002290 101 SMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIR 180 (941)
Q Consensus 101 a~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~ 180 (941)
-||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|||||||||+|++||||||
T Consensus 2 ~msVI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~f~~r~pLld 81 (470)
T 3ilw_A 2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVD 81 (470)
T ss_dssp -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEE
T ss_pred CceEEccccCCchhcCCCchhhHHHHHHHHhCCCCCCCeeehHHHHHHHHHhhCCCcHHHHHHHHHHHhhHhhcCcceee
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCC
Q 002290 181 GHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIP 260 (941)
Q Consensus 181 ~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IP 260 (941)
|||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|||||||||+|||||||||||
T Consensus 82 gqGNFGS~~Gd~aAA~RYte~rLs~ia~~l-l~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGs~GIavGmAT~IP 160 (470)
T 3ilw_A 82 GQGNFGSPGNDPPAAMRYTEARLTPLAMEM-LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIP 160 (470)
T ss_dssp EESCCCCSSSCCCCCTTSCEEEECHHHHHH-HTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEEC
T ss_pred cCCCCCCCCCCccccccceeeehhHHHHHH-HHhcCcchhcCccCcCCCccCCCcccccccHHHhcCCCccccceecCCC
Confidence 999999999999999999999999999997 5889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHcCCCC----CHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcce
Q 002290 261 PHNLGELVDVLCALIHNPEA----TLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMG 336 (941)
Q Consensus 261 phN~~evi~~~~~~i~~~~~----~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~ 336 (941)
||||+|||+||+++|+||++ |+++|++++|||||||||+|.|++|++++|+||+|+|++||+|++|+.. .++++
T Consensus 161 phNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~gPDFPTGG~I~g~~gi~~~y~tGrG~i~~rg~~~ie~~~--~~~~~ 238 (470)
T 3ilw_A 161 PHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDS--RGRTS 238 (470)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEECT--TCCEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccCHHHHhhcccCCCCCCCcEEECccchHHHHhcCCceEEEEEEEEEEecc--CCCCE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999998642 45789
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHhcCCCCcccccccc-CCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEE
Q 002290 337 VIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE-SDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGI 415 (941)
Q Consensus 337 i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~De-s~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l 415 (941)
|+||||||++|+++|+|+|++++++|+++||+|+||| ||++|+||+|+||++++++.++++|||+|+||++|++||++|
T Consensus 239 ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~Nm~al 318 (470)
T 3ilw_A 239 LVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAI 318 (470)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEE
T ss_pred EEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHHHHHHhccchheeceeeeEE
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred ECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHHhCCC
Q 002290 416 LDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDEFKLS 495 (941)
Q Consensus 416 ~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~f~~s 495 (941)
+||+|+++|+++||++|++||+++|+||++|+|+++++|+|||+|+++|++++|+||++||+|++.++|++.|++.|+||
T Consensus 319 ~~g~p~~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~ls 398 (470)
T 3ilw_A 319 VDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDID 398 (470)
T ss_dssp ETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCC
T ss_pred ECCeeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 002290 496 EKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566 (941)
Q Consensus 496 ~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~ 566 (941)
+.||+|||+|+|+|||++|++||++|+++|+++|++|+.+|+|+++++++|++||.+++++||+||||+|.
T Consensus 399 e~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~RrT~i~ 469 (470)
T 3ilw_A 399 EIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRII 469 (470)
T ss_dssp HHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEE
T ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 5
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=100.00 E-value=4.2e-156 Score=1314.43 Aligned_cols=459 Identities=49% Similarity=0.880 Sum_probs=438.2
Q ss_pred ccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhHHHHHHHhhhcccCceeeeecCCCCC
Q 002290 107 GRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAVYDSLVRMAQDFSLRYPLIRGHGNFG 186 (941)
Q Consensus 107 ~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~y~aiv~mAQ~f~~~~pLl~~~GnFG 186 (941)
.|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+|||||||||+|||||||||||||||
T Consensus 1 ~RALPdvrDGLKPvqRRILyam~~~~l~~~k~~~KsArvvG~V~gkYHPHGD~SiydaiVrMAQdFs~r~pLvdgqGNFG 80 (500)
T 3lpx_A 1 MRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFG 80 (500)
T ss_dssp --CCCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHHHHHTCCCCSSHHHHHHHHTTCTTTCSSCSEEEESCCC
T ss_pred CCCCCchhcCCCchhhHHHHHHHHhCCCCCCCceeEeeeHHhHHhccCCCcHHHHHHHHHHHhhhhhccccccccCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccceeeecCCcccccceecCCCCCChHH
Q 002290 187 SIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLPTLLLNGASGIAVGMATNIPPHNLGE 266 (941)
Q Consensus 187 s~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP~lLvNG~~GIavG~aT~IPphN~~e 266 (941)
|+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|||||||||+|||||||||||||||+|
T Consensus 81 S~dGd~aAAmRYteaRLs~ia~~l-l~did~~tvdf~~NyDg~~~EP~vlp~~iP~lLvNGs~GIAvGmATnIPpHNl~E 159 (500)
T 3lpx_A 81 SVDGDSAAAMRYTEIRMSKIAHSI-LADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTE 159 (500)
T ss_dssp CTTCCCCCCGGGCEEEECHHHHTT-STTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCC-------CCBCCCCCHHH
T ss_pred CCCCCcccchhhHhHHHHHHHHHH-HhhcCcccccCccCCCccccCHhhcCccccHhhccCCCccccceeccCCCCCHHH
Confidence 999999999999999999999986 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEEEEEEEEecCCCCcceEEEEeecCCC
Q 002290 267 LVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQT 346 (941)
Q Consensus 267 vi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~ 346 (941)
||+||+++|+||+++++|||+++|||||||||+|.|++|++++|+||+|+|++||+|++|+.. +.++++|+||||||++
T Consensus 160 Vida~~~li~~~~~~~~eLm~~i~gPDfPtgg~i~g~~gi~~~y~tGrG~i~~ra~~~ie~~~-~~~~~~IvITElPy~v 238 (500)
T 3lpx_A 160 VINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHE-TTGKETIIVHELPYQV 238 (500)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCHHHHHHHHHHSEEEEEEECEEEEEECT-TTCCEEEEEEECCTTC
T ss_pred HHHHHHHHhcCCCCCHHHHHhcCCCCCCCCCceEeCccchHHHhhcCCceEEEEEEEEEEecc-cCCCceEEEEecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999998643 3467899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCccccccccCCCCceEEEEEeCCCCChHHHHHHHHhhcccceeeeeeEEEEECCcccccCHH
Q 002290 347 NKSMLVEKIAELVENKTLDGISDIRDESDRSGMRIVIELKRGADPSIVVNSLYRLTALQSSFSCNMVGILDGQPKQMGLK 426 (941)
Q Consensus 347 ~~~~~ie~i~~lv~~k~i~~I~di~Des~~~girivi~lk~~~~~~~~~~~L~k~t~Lq~s~~~N~~~l~~~~pk~~~l~ 426 (941)
|+++|+|+|++++++|+++||+|+|||||++|+||||++|++++++.++++|||+|+||++|++||++|++|+|+++|++
T Consensus 239 ~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~~~~l~~L~k~T~Lq~sf~~Nm~al~~g~pk~~~l~ 318 (500)
T 3lpx_A 239 NKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIK 318 (500)
T ss_dssp CHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEESSSSEEECCHH
T ss_pred CHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHHHHhcCCceeeeeeEEEEECCEeEECCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHHH---------------
Q 002290 427 EVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKDE--------------- 491 (941)
Q Consensus 427 eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~~--------------- 491 (941)
+||++|++||+++|+||++|+|+|+++|+|||+|+++|++|+|+||++||+|+++++|++.|++.
T Consensus 319 eiL~~f~~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~~~Ak~~L~~~~w~~~~~~~~~~~~~ 398 (500)
T 3lpx_A 319 EMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAG 398 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSHHHHHHHHHSSCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHhcccccchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999974
Q ss_pred -------------------hCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002290 492 -------------------FKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIE 552 (941)
Q Consensus 492 -------------------f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~e 552 (941)
|+||+.||+|||+|+|+|||++|.+||++|+++|.++|++|++||+|+++++++|++||.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~f~lse~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 478 (500)
T 3lpx_A 399 NDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVA 478 (500)
T ss_dssp -CTTSCTTCCCC----------CHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccccccc
Q 002290 553 LKNRFSTPRLSMLED 567 (941)
Q Consensus 553 lk~kfg~~RRT~I~~ 567 (941)
++++||+||||+|.-
T Consensus 479 i~~~~g~~RrT~i~~ 493 (500)
T 3lpx_A 479 IRDEFGDERRTEITL 493 (500)
T ss_dssp HHHHHCCCCCSEEC-
T ss_pred HHHHhCCCCCceeec
Confidence 999999999999954
No 6
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=8e-155 Score=1357.18 Aligned_cols=483 Identities=50% Similarity=0.893 Sum_probs=471.6
Q ss_pred CCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhH
Q 002290 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161 (941)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~ 161 (941)
++|.+++++++|+++|++||||||++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+
T Consensus 208 ~~i~~~~i~~~~~~~~l~Yamsvi~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~Ar~vG~V~gkYHPHGD~Si 287 (692)
T 2xcs_B 208 SRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSI 287 (692)
T ss_dssp ----EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCHHHH
T ss_pred cceeeeeHHHHHHHHHHHHHHHhhhcccCCchhhcCCchhHHHHHHHHHhCCCCCCCceeehhhhHHHHhccCCccHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCceeeeecCCCCCCCCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCcccccccc
Q 002290 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARLP 241 (941)
Q Consensus 162 y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~iP 241 (941)
|||||||||+||||||||||||||||+|||+||||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+||
T Consensus 288 ydaiVrmAQ~fs~r~pLldg~GNFGS~~Gd~aAA~RYte~rLs~ia~~l-l~d~d~~tvdf~~nyDg~~~EP~vlp~~iP 366 (692)
T 2xcs_B 288 YEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLEL-LRDINKDTIDFIDNYDGNEREPSVLPARFP 366 (692)
T ss_dssp HHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHH-HTTTTTTCSCEEECTTSSCEEESSCCCSSC
T ss_pred HHHHHHHhhccccccccccCCCCCCCCCCCccccccceeecHHHHHHHH-hhhcccccccCCcCCCCCccChhhcccccc
Confidence 9999999999999999999999999999999999999999999999997 589999999999999999999999999999
Q ss_pred eeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCCcEEEEEE
Q 002290 242 TLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGRGRITVRG 321 (941)
Q Consensus 242 ~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~G~~~~rg 321 (941)
|||||||+|||||||||||||||+|||+||+++|+||++++++|++++|||||||||+|.|++|++++|+||+|+|++||
T Consensus 367 ~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPTGg~I~g~~gi~~~y~tGrG~~~~rg 446 (692)
T 2xcs_B 367 NLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRS 446 (692)
T ss_dssp HHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEEEEEC
T ss_pred HHHHcCCCccccceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEeCCcceeeeeecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCcccccccc-CCCCceEEEEEeCCCCChHHHHHHHHh
Q 002290 322 KTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDE-SDRSGMRIVIELKRGADPSIVVNSLYR 400 (941)
Q Consensus 322 ~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~De-s~~~girivi~lk~~~~~~~~~~~L~k 400 (941)
+|++++.. .++++|+||||||++|+++|+|+|++++++|+++||+|+||+ ||++|+||||+||++++++.++++|||
T Consensus 447 ~~~ie~~~--~~~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~L~k 524 (692)
T 2xcs_B 447 RAVIEERG--GGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYK 524 (692)
T ss_dssp EEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEecC--CCCceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 99998753 357899999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcccceeeeeeEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCC
Q 002290 401 LTALQSSFSCNMVGILDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPS 480 (941)
Q Consensus 401 ~t~Lq~s~~~N~~~l~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~ 480 (941)
+|+||++|++||++|+||+|+++|+++||++|++||+++|+||++|+|+++++|+|+++|++++++++|+||++||+|++
T Consensus 525 ~t~Lq~s~~~Nm~~l~dg~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~ 604 (692)
T 2xcs_B 525 QTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDT 604 (692)
T ss_dssp HSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSS
T ss_pred hccceeeeeeeEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 002290 481 NSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTP 560 (941)
Q Consensus 481 ~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~ 560 (941)
+++|++.|++.|++|+.||+|||+||||+||++|++||++|+++|+++|++|+.+|+|+.+++++|++||.+++++||+|
T Consensus 605 ~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 684 (692)
T 2xcs_B 605 DKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD 684 (692)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 002290 561 RLSMLED 567 (941)
Q Consensus 561 RRT~I~~ 567 (941)
|||+|..
T Consensus 685 RrT~i~~ 691 (692)
T 2xcs_B 685 RRTEIQL 691 (692)
T ss_dssp CCSEEEC
T ss_pred CCccccC
Confidence 9999964
No 7
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.5e-150 Score=1335.19 Aligned_cols=491 Identities=41% Similarity=0.685 Sum_probs=464.8
Q ss_pred CCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCChhhH
Q 002290 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDNAV 161 (941)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd~s~ 161 (941)
..+.+++++++|+++|++||||||++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+
T Consensus 271 ~~~~~i~i~d~~~~~~l~YamsvI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~Si 350 (767)
T 2xkj_E 271 HATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSAC 350 (767)
T ss_dssp ---CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCHHHH
T ss_pred CCceeeeHHHHHHHHHHHHHHHHhhccCCCchhhcCCccchhhhHHHHHhCCCCCCCeeeeeehHHHHhhccCCCchhHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCceeeeecCCCCCCCCCCcc-cccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCccccccc
Q 002290 162 YDSLVRMAQDFSLRYPLIRGHGNFGSIDADPA-AAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPSLLPARL 240 (941)
Q Consensus 162 y~aiv~mAQ~f~~~~pLl~~~GnFGs~~gd~a-AA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~~lp~~i 240 (941)
|||||||||+||||||||||||||||++||+| |||||||||||++|+.| +.|+|+++|+|+|||||+.+||+||||+|
T Consensus 351 ydaiVrmAQ~fs~r~pLldg~GNFGS~dgd~a~AA~RYte~rLs~ia~~l-l~~~d~~tvdf~~n~Dg~~~EP~vlp~~i 429 (767)
T 2xkj_E 351 YEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELL-LSELGQGTSEWQDNFDGSLKEPITLPARV 429 (767)
T ss_dssp HHHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHH-HTTTTTTCSCEEECTTSSSEEESSCCCSS
T ss_pred HHHHHHHhhhhhcccceeecCCCCCCCCCCcccccccceeeeHhHHHHHH-HhhcCccccccCcCCCCcccCchhccccc
Confidence 99999999999999999999999999999998 99999999999999997 58999999999999999999999999999
Q ss_pred ceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEec-chhhHhhhhcCCcEEEE
Q 002290 241 PTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMG-NLGILDAYRTGRGRITV 319 (941)
Q Consensus 241 P~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~-~~g~~~~y~tg~G~~~~ 319 (941)
||||||||+|||||||||||||||+|||+||+++|+||+++++||++++|||||||||+|.+ .+|+.++|+||+|+|++
T Consensus 430 P~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~~i~~~Y~tGrG~i~~ 509 (767)
T 2xkj_E 430 PNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 509 (767)
T ss_dssp CHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHHSEEEEEE
T ss_pred cHHHhcCCCccccccccCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEecCchhhHHHhccCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred EEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCC-CceEEEEEeCC-CCChHHHHHH
Q 002290 320 RGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDR-SGMRIVIELKR-GADPSIVVNS 397 (941)
Q Consensus 320 rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~-~girivi~lk~-~~~~~~~~~~ 397 (941)
||+|++++ ++|+||||||++|+++|+|+|++++++|++++|+|++||||+ +|+||||++|+ +++++.++++
T Consensus 510 rg~~~ie~-------~~ivITElPy~v~~~~~ie~I~~l~~~kki~~I~d~rDesd~~~gvrivI~lk~~~~~~~~vl~~ 582 (767)
T 2xkj_E 510 RAVYTIEK-------NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVMSH 582 (767)
T ss_dssp ECEEEEET-------TEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHHHH
T ss_pred EEEEEEEC-------CEEEEEeCCCcCcHHHHHHHHHHHHhcCCCCceeehhhccCCCCcEEEEEEECcCCCCHHHHHHH
Confidence 99999872 579999999999999999999999999999999999999998 59999999998 6999999999
Q ss_pred HHhhcccceeeeeeEEEE-ECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHh
Q 002290 398 LYRLTALQSSFSCNMVGI-LDGQPKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVR 476 (941)
Q Consensus 398 L~k~t~Lq~s~~~N~~~l-~~~~pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr 476 (941)
|||+|+||++|++||++| .||+|+++|+++||++|++||+++|+||++|+|+++++|+|||+|++++++++|+||++||
T Consensus 583 L~k~T~Lq~sf~~Nm~~l~~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr 662 (767)
T 2xkj_E 583 LFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIR 662 (767)
T ss_dssp HHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHhcchhhhcccceEEEccCCeeEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 002290 477 EAPSNSTASAALKDEFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNR 556 (941)
Q Consensus 477 ~s~~~~~a~~~L~~~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~k 556 (941)
+|+++ +..|++.|++|+.||+|||+|+|+|||++|+.||++|+++|+++|++|+.+|+|+.+++++|++||.+++++
T Consensus 663 ~s~~~---k~~L~~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~ 739 (767)
T 2xkj_E 663 EEDQP---KPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKK 739 (767)
T ss_dssp HCSSH---HHHHHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hccch---HHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99885 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccccccC-CCCCCCccccccCCc
Q 002290 557 FSTPRLSMLEDA-DSGQLDDIDIIPNDE 583 (941)
Q Consensus 557 fg~~RRT~I~~~-~~~~~~~~dlI~~e~ 583 (941)
||+||||+|... ...+++.+|||++|+
T Consensus 740 yg~~RrT~i~~~~~~~~~~~edli~~e~ 767 (767)
T 2xkj_E 740 FGDERRSPIVARAEAVQIKEQDLMPAET 767 (767)
T ss_dssp HCCCCSSCBCCCCCCCCC----------
T ss_pred hCCCCCceeecccccccCCHhhcCCCCC
Confidence 999999999852 335788999998874
No 8
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=3.2e-116 Score=1030.29 Aligned_cols=442 Identities=22% Similarity=0.321 Sum_probs=388.5
Q ss_pred CCCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhc--CcCCCC
Q 002290 80 VSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLG--KFHPHG 157 (941)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g--~yHpHG 157 (941)
-+..+.+++++++|.++|+.|||||| .|||||+|||||||||||||+|+++|+.+ ++||||+||+||| +|| ||
T Consensus 243 ld~~~~~~~~~~~~~~~~i~ysm~~~-~RAlPdv~DGLKPvqRrILyam~~~~~~~---~~K~A~ivG~V~~~~~YH-HG 317 (757)
T 3l4j_A 243 LDPTLKEIPISDFINKELILFSLADN-IRSIPNVLDGFKPGQRKVLYGCFKKNLKS---ELKVAQLAPYVSECTAYH-HG 317 (757)
T ss_dssp CCSSCSEECHHHHHHHTHHHHHHHHH-HHHSCBTTTCCCHHHHHHHHHHHHTTTTS---CEEHHHHHHHHHHHTTCC-SC
T ss_pred cccceeeecHHHHHHHHHHHHhhhhh-hccCchhhccCCchheeeehhhhhhCCCc---CcceeeeehhhhhhcccC-CC
Confidence 34589999999999999999999997 59999999999999999999999999764 5899999999995 999 99
Q ss_pred hhhHHHHHHHhhhcc--cCceeeeecCCCCCCC--CCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCC
Q 002290 158 DNAVYDSLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEP 233 (941)
Q Consensus 158 d~s~y~aiv~mAQ~f--~~~~pLl~~~GnFGs~--~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP 233 (941)
|+|+|||||||||+| |||||||||||||||+ |||+|||||||||||+++|+.| +.|+|+++|+|++ |||+.+||
T Consensus 318 D~siydaiVrmAQ~f~gS~~~pLldgqGNFGS~~~~gd~aAA~RYte~rLs~~a~~l-~~d~d~~~vdf~~-~Dg~~~EP 395 (757)
T 3l4j_A 318 EQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKI-FHPADDPLYKYIQ-EDEKTVEP 395 (757)
T ss_dssp HHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHH-SCGGGGGGSCEEE-CSSSEEEE
T ss_pred chHHHHHHHHHhccchhhcccceeccCCCCCCcCCCCCcccccchhhhchhHHHHHH-hcccccCcccCcC-CCCCccCC
Confidence 999999999999999 5999999999999999 7899999999999999999987 5789999999997 99999999
Q ss_pred cccccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCC-ceEEecchhhHhhhhc
Q 002290 234 SLLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPT-GGLIMGNLGILDAYRT 312 (941)
Q Consensus 234 ~~lp~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~Pdfpt-Gg~i~~~~g~~~~y~t 312 (941)
+||||+|||||||||+|||||||||||||||+|||+||+++|+||++. +| + ||||. +|+|. .+
T Consensus 396 ~vlp~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~~i~~~~~~--~l---~--p~~~G~~G~i~---------~~ 459 (757)
T 3l4j_A 396 EWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELE--QM---H--PWFRGWTGTIE---------EI 459 (757)
T ss_dssp SCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCCC--CC---C--CCCTTCCSEEE---------EE
T ss_pred cccccccchhhhcCCcceEeeeccCCCCCCHHHHHHHHHHHhcCCChh--hh---c--ccccCCCceEE---------ec
Confidence 999999999999999999999999999999999999999999999863 23 3 45652 34443 48
Q ss_pred CCcEEEEEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHH--hcCCCCccccccccCCCCceEEEEEeCCCCC
Q 002290 313 GRGRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELV--ENKTLDGISDIRDESDRSGMRIVIELKRGAD 390 (941)
Q Consensus 313 g~G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv--~~k~i~~I~di~Des~~~girivi~lk~~~~ 390 (941)
|+|+|++||+++.. ++++|+||||||++|+++|+|+|++++ .+|++++|+|++|+|++ |+||||+||++++
T Consensus 460 g~G~~~~rg~~e~~------~~~~IvITElPy~v~~~~lie~I~~lv~~~~K~~~~I~dirDesd~-gvrivI~lk~~~~ 532 (757)
T 3l4j_A 460 EPLRYRMYGRIEQI------GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDD-NIKFIITLSPEEM 532 (757)
T ss_dssp ETTEEEEECEEEEE------ETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSS-SCCEEEECCHHHH
T ss_pred CCcEEEEEEEEEEc------CCCeEEEEeCCCccCHHHHHHHHHHHHhhccCCCccceehhhcCCC-cEEEEEEecCCcc
Confidence 99999999997643 257899999999999999999999999 77889999999999999 9999999999999
Q ss_pred hHHHHHHHHhhcccceeeeeeEEEEEC--Cc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-
Q 002290 391 PSIVVNSLYRLTALQSSFSCNMVGILD--GQ-PKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD- 466 (941)
Q Consensus 391 ~~~~~~~L~k~t~Lq~s~~~N~~~l~~--~~-pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~- 466 (941)
+++++++|||+|+||++|++|+++++| |+ |+|+|+++||++|++||+++|+||++|+|++++.++++++....++.
T Consensus 533 ~~~~l~~L~k~t~Lq~sf~~~nm~l~d~~g~~~~~~~l~eiL~~f~~~R~ev~~rR~~~~l~k~~~~l~~l~nk~rFI~~ 612 (757)
T 3l4j_A 533 AKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKM 612 (757)
T ss_dssp HHHHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEeccceEEEEcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995555554 55 57999999999999999999999999999999999999999888853
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHH----hCC----------------------------------------------CH
Q 002290 467 NLDRVIRIVREAPSNSTASAALKDE----FKL----------------------------------------------SE 496 (941)
Q Consensus 467 ~iD~vI~iIr~s~~~~~a~~~L~~~----f~~----------------------------------------------s~ 496 (941)
.+|..| +-+.+.+++..+.|.+. |.. ..
T Consensus 613 vi~g~l--~i~nkkk~~li~eL~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (757)
T 3l4j_A 613 IIEKEL--TVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELY 690 (757)
T ss_dssp HHTTSC--CCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------CTTT
T ss_pred HHcCee--EEcCCcHHHHHHHHHHcCCCCCcccccccccccccccccccccccchhhhccccccccccccccccCccccc
Confidence 122211 11334455555555543 110 00
Q ss_pred HHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 497 KQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 497 ~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
..|+|||+||||+||.+++++|.+|.+++++|++.|+.. ...++|.++|+++.+.|.
T Consensus 691 ~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~~-----t~~dlW~~DLd~f~~~~~ 747 (757)
T 3l4j_A 691 GTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL-----SAKDIWNTDLKAFEVGYQ 747 (757)
T ss_dssp CBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHHH
T ss_pred CchHHHhCCchhccCHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Confidence 259999999999999999999999999999999999987 455889999999987763
No 9
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=2.3e-113 Score=1006.56 Aligned_cols=441 Identities=23% Similarity=0.367 Sum_probs=390.4
Q ss_pred CCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhh--hcCcCCCChh
Q 002290 82 PRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEV--LGKFHPHGDN 159 (941)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v--~g~yHpHGd~ 159 (941)
..+..+++++++.+..+.|||+ +++|||||++||||||||||||+|++++ +++|+||||+||+| ||+|| |||+
T Consensus 286 ~~~~~i~y~dFInkELi~FS~a-dn~RaiP~v~DGLKPvqRriLy~m~~~~---~~~~~K~A~~vG~vse~~~YH-HGd~ 360 (803)
T 3qx3_A 286 TATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQ 360 (803)
T ss_dssp ---CEEEHHHHHHHTHHHHHHH-HHHHHSCBTTTSCCHHHHHHHHHHHHHC---CSSCEEHHHHHHHHHHHHTCC-SCHH
T ss_pred CccceeeHHHhhhHHHHHHHHH-hhccCCCchhhCCCcccceeeHhhhccC---CCCceeEEEEeeehhhhccCC-CChH
Confidence 3577899999999999999995 7899999999999999999999999987 77999999999999 89999 9999
Q ss_pred hHHHHHHHhhhcc--cCceeeeecCCCCCCC--CCCcccccccccccccHHHHHhhcccCCcCccccccCCC-CCcCCCc
Q 002290 160 AVYDSLVRMAQDF--SLRYPLIRGHGNFGSI--DADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFD-ESQKEPS 234 (941)
Q Consensus 160 s~y~aiv~mAQ~f--~~~~pLl~~~GnFGs~--~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D-~~~~EP~ 234 (941)
|+|+|||||||+| |||||||+|||||||| |||+||||||||||||++|+.| +.|+|+++|+| ||| |+.+||+
T Consensus 361 siy~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr~~~gd~aAA~RYte~rLs~~a~~l-~~~~d~~~vd~--~ydd~~~~EP~ 437 (803)
T 3qx3_A 361 ALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLL-FPAVDDNLLKF--LYDDNQRVEPE 437 (803)
T ss_dssp HHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTSCEECBCTTHHHH-SCHHHHTTSCE--EEETTEEEEES
T ss_pred HHHHHHHHHhcchhhhccccccccCCCcCCCCCCCCcccchhhhheeccHHHHHH-hhccccccccc--ccCCCcccccc
Confidence 9999999999999 5999999999999996 8999999999999999999997 57899999999 685 6689999
Q ss_pred ccccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCC
Q 002290 235 LLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314 (941)
Q Consensus 235 ~lp~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~ 314 (941)
||||+|||||||||+|||||||||||||||+|||+||+++|+||+ |+|||||| .|+.|+++ +||+
T Consensus 438 vlp~~iP~lLvNGa~GIavGmaTnIPphNl~Evi~a~~~ll~~~~----------~~pd~P~~---~gf~G~i~--~tGr 502 (803)
T 3qx3_A 438 WYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNY---KNFKGTIQ--ELGQ 502 (803)
T ss_dssp CCCCSSCHHHHTTCEEECSSCEEECCCCCHHHHHHHHHHHHTTCC----------CCCCCCCC---TTCCSEEE--EEET
T ss_pred cccccCCeeeecCCcceEeeeecCCCCCCHHHHHHHHHHHhcCCC----------CCCCCCcc---CCCcceEE--ecCC
Confidence 999999999999999999999999999999999999999999987 68999996 35566655 6999
Q ss_pred cEEEEEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHH---hcCCCCccccccccCCCCceEEEEEeCCCCCh
Q 002290 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELV---ENKTLDGISDIRDESDRSGMRIVIELKRGADP 391 (941)
Q Consensus 315 G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv---~~k~i~~I~di~Des~~~girivi~lk~~~~~ 391 (941)
|+|++||+++++. +++|+||||||++|++.++++|.+.+ ++|+++||+||||+||++|+||+|+|++++++
T Consensus 503 g~~~~rg~~~~~~------~~~IvITELPy~~~t~~~k~~lle~i~~~~~K~~~~I~d~rDes~~~gvrivI~Lk~~~~~ 576 (803)
T 3qx3_A 503 NQYAVSGEIFVVD------RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLA 576 (803)
T ss_dssp TEEEEECEEEEEE------TTEEEEEECCTTCCHHHHHHHTHHHHHHCCSSSCCCCSEEEECCCSSCCCEEEECCHHHHH
T ss_pred cEEEEEEEEEEec------CCEEEEEECCCccchhHHHHHHHHHHHhhcccCCcceeeccccCCCCceEEEEEEcCCchH
Confidence 9999999999873 57899999999999988888754433 46788999999999999999999999999999
Q ss_pred HHHHHHHHhhcccceeeeeeEEEEECCc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C
Q 002290 392 SIVVNSLYRLTALQSSFSCNMVGILDGQ---PKQMGLKEVLQAFLDFRCSVVERRARFKLSQVKERRHIVEGIMVGLD-N 467 (941)
Q Consensus 392 ~~~~~~L~k~t~Lq~s~~~N~~~l~~~~---pk~~~l~eil~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~-~ 467 (941)
++++++|||+|+||++|++||++++|+. |+|++++|||++|++||+++|+||++|+|+++++++++|++..+++. .
T Consensus 577 ~~vl~~Lyk~t~Lq~sf~~n~~~l~d~~g~~pk~~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rFI~~v 656 (803)
T 3qx3_A 577 QAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEK 656 (803)
T ss_dssp HHHHHCHHHHTTCEEEEECCCEEEECTTSCEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEeeceeEEEECCCCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 68999999999999999999999999999999999999999999853 2
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHH-hCCC---------------------------------HHHHHHHHhccHHHhhHH
Q 002290 468 LDRVIRIVREAPSNSTASAALKDE-FKLS---------------------------------EKQADAILDMNLRRLTML 513 (941)
Q Consensus 468 iD~vI~iIr~s~~~~~a~~~L~~~-f~~s---------------------------------~~qaeaIL~M~L~rLT~l 513 (941)
+|..| +-..+.+++..+.|.+. |.-. ...|+|||+||||+||.+
T Consensus 657 i~g~l--~i~nkkk~~li~eL~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~E 734 (803)
T 3qx3_A 657 IQGKI--TIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKE 734 (803)
T ss_dssp HTTSC--CCTTCCHHHHHHHHHHTTCCSCHHHHHHHHCC-----------------------CCCCHHHHTSBGGGGSHH
T ss_pred hcCce--eecCCcHHHHHHHHHHcCCCCCCchhhhhhhccccccccccccccccccccccccccchhHHhCCchhhcCHH
Confidence 22222 11344555666666552 2110 015999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
++++|.+|++++++|++.|+.. ...++|.++|+++.+.|-
T Consensus 735 ~~~kL~~q~~~k~~El~~L~~~-----t~~dlW~~DLd~f~~~~~ 774 (803)
T 3qx3_A 735 KVEELIKQRDAKGREVNDLKRK-----SPSDLWKEDLAAFVEELD 774 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 455889999999988774
No 10
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-113 Score=1069.69 Aligned_cols=448 Identities=22% Similarity=0.339 Sum_probs=392.1
Q ss_pred CCCCCceecchhHHHHHhhHhhHhhhhcccCCCcCccCCCcchhHHHHHHHHcCCCCCCCcceeEEehhhhhcCcCCCCh
Q 002290 79 NVSPRIVPVELHEEMTGSYITYSMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGD 158 (941)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~~~ya~~vi~~RaiPd~~DGLKPvqRrILy~m~~~~l~~~~~~~K~A~~vG~v~g~yHpHGd 158 (941)
..+..+.+++++++|.++|+.||||||. |||||++||||||||||||+|+++|++++.+|+|||++||+|+| || |||
T Consensus 662 ~~d~~~~~~~~~d~~~~~~~~ys~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~-yh-HGd 738 (1177)
T 4gfh_A 662 VLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGE 738 (1177)
T ss_dssp CCCSSCSEEEHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC-SCH
T ss_pred ccccccccccHHHHHHhhhhhhhhhhhh-hcCchhhhhcCcccceEehhhhhhccCCCccHHHHHHHHHhhhc-cC-CCc
Confidence 3455788999999999999999999997 99999999999999999999999999999999999999999999 99 999
Q ss_pred hhHHHHHHHhhhcc--cCceeeeecCCCCCC--CCCCcccccccccccccHHHHHhhcccCCcCccccccCCCCCcCCCc
Q 002290 159 NAVYDSLVRMAQDF--SLRYPLIRGHGNFGS--IDADPAAAMRYTECRLEALSEAMLLADIDQDTVNFVPNFDESQKEPS 234 (941)
Q Consensus 159 ~s~y~aiv~mAQ~f--~~~~pLl~~~GnFGs--~~gd~aAA~RYte~rls~~~~~~~~~d~d~~~v~~~~n~D~~~~EP~ 234 (941)
+|||+|||+|||+| |||||||+||||||| .|||+|||||||||||+++|+.| +.|+|+++|+|+|| ||+.+||+
T Consensus 739 ~s~~~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr~~~g~~~Aa~RYte~rl~~~a~~l-~~~~d~~~v~~~~~-d~~~~EP~ 816 (1177)
T 4gfh_A 739 QSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKI-FHPADDPLYKYIQE-DEKTVEPE 816 (1177)
T ss_dssp HHHHHHHHHHHCCSTTSCTTCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHH-SCGGGTTTSCEEEE-TTEEEEES
T ss_pred chHHHHHHHHHHHHHhhCceeeEEccCCCCccCCCCCcccccchhhhhHHHHHHHh-cchhccccccCcCC-CCCccCcc
Confidence 99999999999999 899999999999999 49999999999999999999997 57889999999998 89999999
Q ss_pred ccccccceeeecCCcccccceecCCCCCChHHHHHHHHHHHcCCCCCHHHHhccCCCCCCCCceEEecchhhHhhhhcCC
Q 002290 235 LLPARLPTLLLNGASGIAVGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILDAYRTGR 314 (941)
Q Consensus 235 ~lp~~iP~lLvNG~~GIavG~aT~IPphN~~evi~~~~~~i~~~~~~~~~l~~~~~~PdfptGg~i~~~~g~~~~y~tg~ 314 (941)
||||+|||||||||+|||||||||||||||.|||+||+++|+|+++ .+++||+.+|+|++ ++|++|+
T Consensus 817 ~~~p~iP~lLvNGs~GIavGmaT~IPphN~~Evi~~~~~li~~~~~-----~~l~P~~~g~~G~i--------~~~~~gr 883 (1177)
T 4gfh_A 817 WYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL-----EQMHPWFRGWTGTI--------EEIEPLR 883 (1177)
T ss_dssp CCCCSSCSTTTTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCC-----CCCCBCCTTCCCEE--------EECSTTC
T ss_pred ccccccchhhccCCCcccccccccCCCCCHHHHHHHHHHHhcCCCH-----HHcCCCCCCCCCce--------EeecCcE
Confidence 9999999999999999999999999999999999999999999975 46778777777643 5677776
Q ss_pred cEEEEEEEEEEEEecCCCCcceEEEEeecCCCCHHHHHHHHHHHH--hcCCCCccccccccCCCCceEEEEEeCCCCChH
Q 002290 315 GRITVRGKTEVELLDSKSKRMGVIIKEIPYQTNKSMLVEKIAELV--ENKTLDGISDIRDESDRSGMRIVIELKRGADPS 392 (941)
Q Consensus 315 G~~~~rg~~~ie~~~~~~~~~~i~ItElP~~~~~~~~ie~i~~lv--~~k~i~~I~di~Des~~~girivi~lk~~~~~~ 392 (941)
| +++|+++. . ++++|+||||||++|+++|+|+|++++ ++|++++|+|++|+|| +|+||||+++++..++
T Consensus 884 ~--~~~g~~e~--~----~~~~i~ITELP~~v~~~~~~e~i~~~~~~~~K~~~~I~d~~d~sd-~~vrivI~lk~~~~~~ 954 (1177)
T 4gfh_A 884 Y--RMYGRIEQ--I----GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-DNIKFIITLSPEEMAK 954 (1177)
T ss_dssp E--EEECEEEE--E----ETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCS-SSCCEEEECCHHHHHH
T ss_pred E--EEEEEEEE--c----CCCEEEEEeCCccccHHHHHHHHHHHhhhccCcccceeechhcCC-CccEEEEEECCCccHH
Confidence 5 55666543 2 367899999999999999999999998 5688999999999997 7999999999999999
Q ss_pred HHHHHHHhhcccceeeee-eEEEEE-CCc-ccccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHH
Q 002290 393 IVVNSLYRLTALQSSFSC-NMVGIL-DGQ-PKQMGLKEVLQAFLDFRCSVVERRA-------RFKLSQVKERRHIVEGIM 462 (941)
Q Consensus 393 ~~~~~L~k~t~Lq~s~~~-N~~~l~-~~~-pk~~~l~eil~~f~~~R~~~~~rR~-------~~~L~k~~~r~~ilegli 462 (941)
.++++|||+|+||++|++ ||++++ +|+ |+|+|++|||++|++||+++|+||+ +++|++++.|+|+++|++
T Consensus 955 ~~~~~L~k~t~L~~s~~~~Nm~~~d~~g~i~k~~~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi 1034 (1177)
T 4gfh_A 955 TRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMII 1034 (1177)
T ss_dssp HHHHCHHHHTTCEEEECCSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhccCcceecceEEEEEcCCCCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998 555554 333 8999999999999999999999995 555666667777888754
Q ss_pred -----HhhcChHHHHHHHhcCCChH-------------------------------------HHHHHHHHHhCCCHHHHH
Q 002290 463 -----VGLDNLDRVIRIVREAPSNS-------------------------------------TASAALKDEFKLSEKQAD 500 (941)
Q Consensus 463 -----~~~~~iD~vI~iIr~s~~~~-------------------------------------~a~~~L~~~f~~s~~qae 500 (941)
++..++|++|++||++..++ ++.+.+++.|.+++.||+
T Consensus 1035 ~~~L~i~~~~~devI~~Lr~~~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyd 1114 (1177)
T 4gfh_A 1035 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 1114 (1177)
T ss_dssp TTSCCCSSSCHHHHHHHHHHTTCCEECSSSCEECCC------------------------------------CTTTCBTH
T ss_pred cCeEEEecCCHHHHHHHHHHCCCcccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhh
Confidence 33457899999999865432 122344455778888999
Q ss_pred HHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 501 AILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 501 aIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
|||+||||+||+++++||++|+++++++|++|+++ ++ .++|.+||++++++|.
T Consensus 1115 yIL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~~~--s~---~~lw~~DLd~~~~~~~ 1167 (1177)
T 4gfh_A 1115 YLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SA---KDIWNTDLKAFEVGYQ 1167 (1177)
T ss_dssp HHHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTC--CH---HHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 33 3678899988888774
No 11
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.5e-61 Score=543.51 Aligned_cols=333 Identities=28% Similarity=0.490 Sum_probs=297.3
Q ss_pred cccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCc
Q 002290 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC 655 (941)
Q Consensus 576 ~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~ 655 (941)
.|||++|+++|++|++|||||+++++|.+|+|+++|..+++++++|++.+++.|++||+|+|||+.|++|+|++++||++
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC
Q 002290 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735 (941)
Q Consensus 656 ~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~ 735 (941)
+|+++|.|++++|+|.+||+|++++++++|.++.+++++|++||+||+++++|..++++|+.+++|+++|+|+++..+++
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 99999999999999999999999999988877889999999999999999999998888999999999999999999999
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEeccccccc--ccCCCC-C----CCCC-------
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKD--LERTPE-D----SHSN------- 801 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~--~~~~~~-~----~~~~------- 801 (941)
+++|+++|++|+++||++++||.+||+++||++|+|+++|+|+++..+++..... .+.... + ....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998886310000 000000 0 0000
Q ss_pred CCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEE
Q 002290 802 VKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880 (941)
Q Consensus 802 ~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~ 880 (941)
.....+++++++|++||+||+++++|+.++|+++|+++|++++ ++.|++++++ .++++++++|++|+++|+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v--------~~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLL--------GSTDEVMLISDGGTLVRT 312 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEE--------CTTCEEEEEETTCCEEEE
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEe--------CCCceEEEEcCCCeEEEe
Confidence 0001346899999999999999999999999999999999975 6799998887 356899999999999999
Q ss_pred ecCccccccccCCceEEEEcCCCCeEEEEEEecCCC
Q 002290 881 KVRDISIQARYARGVILMRLELSGKIQSASLISVTE 916 (941)
Q Consensus 881 ~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~~~~ 916 (941)
++++|+++||+++||++|+|+++|+|+++..+++.+
T Consensus 313 ~v~~i~~~gR~t~Gv~li~l~~~~~v~~v~~~~~~~ 348 (370)
T 3l6v_A 313 RGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASL 348 (370)
T ss_dssp EGGGSCBCCSSSCCEESSCCCTTCCEEEEEEECCCC
T ss_pred eHhhCCccCCCCCCeEEEecCCCCEEEEEEEccCcc
Confidence 999999999999999999999999999999987654
No 12
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-58 Score=516.02 Aligned_cols=305 Identities=30% Similarity=0.542 Sum_probs=283.9
Q ss_pred CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcccc
Q 002290 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA 660 (941)
Q Consensus 581 ~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~ 660 (941)
.|+++|++|++|||||+++++|.+|+||++|..+++++++|.+.+++.|+++|+|+|||+.|++|++++++||+++|+++
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEE
Q 002290 661 GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740 (941)
Q Consensus 661 G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Il 740 (941)
|.|+.++++|+++|+|++++++++|+++++++++|++||+||+++++|..++|.|+.+++|+++|+|+++..++++++|+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 99999999999999999999999888899999999999999999999999988899999999999999999999999999
Q ss_pred EEecCCcEEEEecc--cccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCcc
Q 002290 741 MASQNGMVILSSCD--IIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGH 818 (941)
Q Consensus 741 l~T~~G~vir~~v~--eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~ 818 (941)
++|++|++++|+++ +||++||.++|+++|+|++||+|+++..+++ +.+++++|++|+
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~---------------------~~~ll~~T~~G~ 220 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE---------------------GTYLLVATSGGY 220 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT---------------------TCEEEEEETTSE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC---------------------CCEEEEEeCCCc
Confidence 99999999999999 9999999999999999999999999988753 358999999999
Q ss_pred EEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEE
Q 002290 819 GKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVIL 897 (941)
Q Consensus 819 gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~l 897 (941)
+||+++++|+..+|+++|++++++++ +|+|+++.++ .++++|+++|++|+++||++++||.+||+++||++
T Consensus 221 ~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~--------~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~ 292 (327)
T 3uc1_A 221 AKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV--------DDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRL 292 (327)
T ss_dssp EEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE--------CTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEEC
T ss_pred EEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe--------CCCccEEEEcCCCeEEEEehhhccccCCCCCCeEe
Confidence 99999999999999999999999986 8999998876 35679999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEEecC
Q 002290 898 MRLELSGKIQSASLISV 914 (941)
Q Consensus 898 mkL~~~d~Vvsv~~i~~ 914 (941)
|+|.++|+|+++..+.+
T Consensus 293 i~l~~~d~vv~~~~~~~ 309 (327)
T 3uc1_A 293 MNLGEGDTLLAIARNAE 309 (327)
T ss_dssp TTCCTTCCEEEEEECC-
T ss_pred EecCCCCEEEEEEEcCC
Confidence 99999999999988764
No 13
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00 E-value=3.4e-57 Score=500.23 Aligned_cols=305 Identities=33% Similarity=0.568 Sum_probs=269.5
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
++|+++|++|++|||||+++++|.+++++++|..+++++++|++.+++.|+++|+|+|||+.|++|++++++||+++|++
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 57889999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeE
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~I 739 (941)
+|.|+.++|+|.+||+|++++++.+|+++++++++|++||+||+++++|..++|.|+.+++|+++|+|+++..++++++|
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV 160 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEE
Confidence 99999999999999999999998877778899999999999999999999988889999999999999999999999999
Q ss_pred EEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccE
Q 002290 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHG 819 (941)
Q Consensus 740 ll~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~g 819 (941)
+++|++|+++||++++||.+||.++||++|+|++||+|+++..+++ ++.++++|++|++
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~---------------------~~~ll~~T~~G~~ 219 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG---------------------DGAILTATQNGYG 219 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS---------------------SCEEEEEETTSEE
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC---------------------CCEEEEEEcCCce
Confidence 9999999999999999999999999999999999999999876643 2579999999999
Q ss_pred EEEeCCCccccCCCcceeEEEEccCC-CcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEE
Q 002290 820 KRVPLSSFRKLPLNRVGLIGYKFSAE-DRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILM 898 (941)
Q Consensus 820 KR~~lse~~~~~R~~kGv~~ikl~~~-D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lm 898 (941)
||+++++|+.++|+++|+++++++++ |+|+++..+ .++++++++|++|+++|+++++||.++|+++||++|
T Consensus 220 Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v--------~~~~~l~~~t~~g~~ir~~~~~i~~~~R~~~Gv~~i 291 (307)
T 1zi0_A 220 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQV--------DDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILI 291 (307)
T ss_dssp EEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEE--------CTTCEEEEEESSCCEEEEEGGGSCBCCSSCCCEECS
T ss_pred EEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEe--------CCCceEEEEcCCCcEEEEecccccccCcCCCCeEeE
Confidence 99999999999999999999999875 999998877 356789999999999999999999999999999999
Q ss_pred EcCCCCeEEEEEEec
Q 002290 899 RLELSGKIQSASLIS 913 (941)
Q Consensus 899 kL~~~d~Vvsv~~i~ 913 (941)
+|+++|+|+++..++
T Consensus 292 ~l~~~~~v~~~~~~~ 306 (307)
T 1zi0_A 292 RTAEDENVVGLQRVA 306 (307)
T ss_dssp CCCTTCCEEEEEECC
T ss_pred EcCCCCEEEEEEEcC
Confidence 999999999998764
No 14
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=100.00 E-value=1.1e-55 Score=491.00 Aligned_cols=304 Identities=20% Similarity=0.400 Sum_probs=281.6
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
||++|+++|++|++|||||+++++|.++.+ .+++++++|++.+++.|+++|+|+|||+.|++|++++++||+++|
T Consensus 1 lI~~e~~~v~lT~~G~IKr~~~~~~~~~~~-----~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r 75 (323)
T 1wp5_A 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNG-----QDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75 (323)
T ss_dssp CCSCCEEEEEEETTCEEEEEEHHHHHHTTT-----CCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CccCCcEEEEEeCCCEEEEeEHHHhhhcCc-----cccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC
Confidence 689999999999999999999999988754 367899999999999999999999999999999999999999999
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccc-cCceEEEecCCCCeEEEEEEecCC
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIR-TTGIIAIQLVPGDELKWVRCCTND 736 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~-r~G~~~ikLk~gD~Lv~v~~~~~~ 736 (941)
+++|.|++++|+|.+||+|++++++++|.++++++++|++||+||+++++|..++ +.|+.+++|+++|+|+++..++++
T Consensus 76 ~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~ 155 (323)
T 1wp5_A 76 KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGM 155 (323)
T ss_dssp TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSC
T ss_pred CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCC
Confidence 9999999999999999999999999877667899999999999999999999987 569999999999999999999999
Q ss_pred CeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecC
Q 002290 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSES 816 (941)
Q Consensus 737 d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~ 816 (941)
++|+++|++|+++||++++||.+||+++||++|+|++||+|+++..+++. .+.++++|++
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~--------------------~~~ll~vt~~ 215 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSK--------------------DESIVVATQR 215 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCT--------------------TCEEEEEETT
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCC--------------------CcEEEEEECC
Confidence 99999999999999999999999999999999999999999999877431 1379999999
Q ss_pred ccEEEEeCCCccccCCCcceeEEEE-ccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCc
Q 002290 817 GHGKRVPLSSFRKLPLNRVGLIGYK-FSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARG 894 (941)
Q Consensus 817 G~gKR~~lse~~~~~R~~kGv~~ik-l~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~G 894 (941)
||+||+++++|+.++|+++|+++++ +++ ++.++++..+ .++++++++|++|+++|+++++||.++|+++|
T Consensus 216 G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v--------~~~~~i~~it~~g~~ir~~~~~i~~~~R~t~G 287 (323)
T 1wp5_A 216 GAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVA--------QDSDTIYLQTEKSFIETIKVGDIRFSDRYSNG 287 (323)
T ss_dssp SEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEE--------CTTCEEEEEETTSCEEEEEGGGSCBCCSSSCC
T ss_pred CceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEe--------CCCCeEEEEeCCCeEEEEEhhhcCccCccCCC
Confidence 9999999999999999999999997 444 5588887776 35678999999999999999999999999999
Q ss_pred eEEEEcCCCCeEEEEEEecC
Q 002290 895 VILMRLELSGKIQSASLISV 914 (941)
Q Consensus 895 V~lmkL~~~d~Vvsv~~i~~ 914 (941)
|++|+++++|+|+++..+++
T Consensus 288 v~l~~~~~~~~v~~~~~~~~ 307 (323)
T 1wp5_A 288 SFVLDEEENGRVISVWKVEA 307 (323)
T ss_dssp EESSCHHHHCCEEEEEEECS
T ss_pred eEEEEcCCCCEEEEEEEecC
Confidence 99999999999999998754
No 15
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=100.00 E-value=3.5e-54 Score=477.17 Aligned_cols=307 Identities=27% Similarity=0.464 Sum_probs=274.0
Q ss_pred cccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCc
Q 002290 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPEC 655 (941)
Q Consensus 576 ~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~ 655 (941)
||||++++++|++|++|||||+++++|.+++++++|..++++++||++.+++.|+++|+++|||+.|++|++++++||++
T Consensus 2 edli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 2 SDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp ------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred ccccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCC
Confidence 67999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecC
Q 002290 656 TRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTN 735 (941)
Q Consensus 656 ~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~ 735 (941)
+|+++|.|+.++++|.+||+|++++++.+|.++++++++|++||+||+++++|+..++.|+.+++|+++|+|+++..+.+
T Consensus 82 ~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 82 SRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 99999999999999999999999999987767889999999999999999999988777999999999999999999988
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEec
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSE 815 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe 815 (941)
+++|+++|++|+++||++++||.+||+++||++|+|++||+|+++..+++ +++++++|+
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~---------------------~~~l~~vt~ 220 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE---------------------NPYLLIVSE 220 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT---------------------CSEEEEEET
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC---------------------CCeEEEEEC
Confidence 89999999999999999999999999999999999999999999987743 357999999
Q ss_pred CccEEEEeCCCccccCCCcceeEEEEcc--CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCC
Q 002290 816 SGHGKRVPLSSFRKLPLNRVGLIGYKFS--AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYAR 893 (941)
Q Consensus 816 ~G~gKR~~lse~~~~~R~~kGv~~ikl~--~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~ 893 (941)
+|++||+++++|+.++|+++|++++++. +++.++++..+ .++++++++|++|+++|+++++|+.++|+++
T Consensus 221 ~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~--------~~~~~l~~~t~~g~~~r~~~~~i~~~~R~~~ 292 (312)
T 1suu_A 221 NGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAV--------SEDDEILLVSKRSKALRTVAGKVSEQGKDAR 292 (312)
T ss_dssp TSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEE--------CTTCEEEEEETTCEEEEEEGGGSCBCCTTCC
T ss_pred CCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEe--------CCCCEEEEEeCCCeEEEEEcccCCccCccCC
Confidence 9999999999999999999999999987 35788887666 3568899999999999999999999999999
Q ss_pred ceEEEEcCCCCeEEEEEEe
Q 002290 894 GVILMRLELSGKIQSASLI 912 (941)
Q Consensus 894 GV~lmkL~~~d~Vvsv~~i 912 (941)
|+++|+|+ +|+|+++..+
T Consensus 293 G~~l~~l~-~~~v~~~~~~ 310 (312)
T 1suu_A 293 GIQVLFLD-NDSLVSVSKF 310 (312)
T ss_dssp CEECSCCS-SCCEEEEEEC
T ss_pred CeEEEECC-CCEEEEEEEe
Confidence 99999999 9999998754
No 16
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-47 Score=417.95 Aligned_cols=272 Identities=19% Similarity=0.302 Sum_probs=249.7
Q ss_pred ceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccCc
Q 002290 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGT 662 (941)
Q Consensus 583 ~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~ 662 (941)
++.|++|++||||+...+. . +||.+.+++.|+++|+|+|||++|++|++++++||+.+|.+
T Consensus 2 ~vtvils~~Gwir~~~g~~---------------~-~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--- 62 (276)
T 3no0_A 2 SITVAVLQDGSIIPVEELP---------------L-EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--- 62 (276)
T ss_dssp EEEEEEETTSEEEEGGGCC---------------S-SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC---
T ss_pred cEEEEEcCCceeeeccCCC---------------C-CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc---
Confidence 5789999999999875321 1 89999999999999999999999999999999999876643
Q ss_pred ccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEE
Q 002290 663 PLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMA 742 (941)
Q Consensus 663 pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~ 742 (941)
+ |++||+|+++++ ++| ++++++++|++||+||+++++|. ++++|+.+++|++||+|+.+..++++++|+++
T Consensus 63 -----l-l~~~e~i~~v~~-~~~-~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~ 133 (276)
T 3no0_A 63 -----L-KSREEKIVGAFI-REK-FGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLF 133 (276)
T ss_dssp -----C-SSTTCCEEEEEE-GGG-SCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEE
T ss_pred -----c-CCCCCEEEEEEC-CcC-CCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEE
Confidence 5 889999999998 767 67899999999999999999999 77889999999999999999999999999999
Q ss_pred ecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEE
Q 002290 743 SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRV 822 (941)
Q Consensus 743 T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~ 822 (941)
|++|++++|++++||.+||.++|+++|+|++||+|+++..+++ +++++++|++|++||+
T Consensus 134 T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~---------------------~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 134 TKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG---------------------EPYLLVITAKGRVKKI 192 (276)
T ss_dssp ETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS---------------------CSEEEEEETTSCEEEE
T ss_pred ECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC---------------------CCEEEEEeCCCcEEEe
Confidence 9999999999999999999999999999999999999988754 3689999999999999
Q ss_pred eCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEE--EecCccccccccCCceEEEEc
Q 002290 823 PLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNR--IKVRDISIQARYARGVILMRL 900 (941)
Q Consensus 823 ~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR--~~v~eI~~~gR~a~GV~lmkL 900 (941)
++++|+.++|+++|+.++ .++|+++++.++ +++++++++|++|+++| |++++||.++|+++||++|+|
T Consensus 193 ~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~--------~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R~~~Gv~~i~l 262 (276)
T 3no0_A 193 SHEEIPKTNRGVKGTEVS--GTKDTLVDLIPI--------KEEVELLITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKL 262 (276)
T ss_dssp EGGGSCCCCTTCCCEECC--CSSSCEEEEEEE--------SSEEEEEEEETTSCEEEEEEEGGGSCBCCTTSCCC-CCCC
T ss_pred EHHHcccCCCCCcceEEE--cCCCcEEEEEEe--------CCCCEEEEEcCCCeEEEeeeCHHHCCCcCCCCCCEEeEEc
Confidence 999999999999999998 678999988776 35679999999999999 999999999999999999999
Q ss_pred CCCCeEEEEEEecC
Q 002290 901 ELSGKIQSASLISV 914 (941)
Q Consensus 901 ~~~d~Vvsv~~i~~ 914 (941)
.+ |+|+++..+++
T Consensus 263 ~~-d~v~~~~~~~~ 275 (276)
T 3no0_A 263 ED-DEIIKVVIKKS 275 (276)
T ss_dssp TT-CCEEEEEEEEE
T ss_pred CC-CEEEEEEEecC
Confidence 99 99999998874
No 17
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=100.00 E-value=6.4e-37 Score=329.82 Aligned_cols=219 Identities=19% Similarity=0.322 Sum_probs=196.2
Q ss_pred CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcccc
Q 002290 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA 660 (941)
Q Consensus 581 ~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~ 660 (941)
+|+++|++|++|||||++++.|. ..++++++||++.+++.|+++|+|+|||+.|++|++++++||.. +++
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~--------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~--r~~ 70 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDID--------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQ 70 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCC--------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS--SSC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCC--------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc--CCC
Confidence 57899999999999999988763 45778999999999999999999999999999999999999998 379
Q ss_pred CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEe-cCCCeE
Q 002290 661 GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCC-TNDDLV 739 (941)
Q Consensus 661 G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~-~~~d~I 739 (941)
|.|+.++|+|.+||+|+++++++ ++++++++|++||+||+++++|..++|+|+.+++|+++|+|+++..+ +++++|
T Consensus 71 G~~i~~~i~L~~~e~Iv~~~~~~---~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i 147 (256)
T 1zvt_A 71 GEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 147 (256)
T ss_dssp CEEGGGTCCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEE
T ss_pred CeEeeeeecCCCCCEEEEEEEeC---CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEE
Confidence 99999999999999999998764 56789999999999999999999988999999999999999999888 578899
Q ss_pred EEEecCCcEEEEecccccccCCCCCCeeeeeCC------CCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEE
Q 002290 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK------DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFV 813 (941)
Q Consensus 740 ll~T~~G~vir~~v~eI~~~gR~a~GV~li~L~------~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllv 813 (941)
+++|++|+++||++++||.+|| ++||++|+|+ ++|+|+++..+++ ++ .+++
T Consensus 148 ~l~T~~G~~lrf~~~ei~~~gR-a~GV~~i~L~~~~~k~~~d~Vv~~~~~~~---------------------~~-~l~~ 204 (256)
T 1zvt_A 148 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP---------------------QS-TLTI 204 (256)
T ss_dssp EEEETTSEEEEEEGGGSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC----------------------CC-EEEE
T ss_pred EEEcCCCeEEEEEHHHCCCcCc-cCCeEEEEcccccCCCCCCEEEEEEEECC---------------------CC-EEEE
Confidence 9999999999999999999999 9999999999 9999999987753 13 4455
Q ss_pred ecCccEE-EEe---CCCccccCCCccee
Q 002290 814 SESGHGK-RVP---LSSFRKLPLNRVGL 837 (941)
Q Consensus 814 Te~G~gK-R~~---lse~~~~~R~~kGv 837 (941)
+ .|++| +.. +.+|+ .+|+++|+
T Consensus 205 ~-~g~~k~~~~~~~~~~y~-~~Rg~~G~ 230 (256)
T 1zvt_A 205 H-VGKRKIKLRPEELQKVT-GERGRRGT 230 (256)
T ss_dssp E-ETTEEEEECHHHHHTTB-CCTTSCCE
T ss_pred E-eCcceEEecHHHhhhhc-cCCCCCCc
Confidence 5 88888 444 55565 88999998
No 18
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-35 Score=327.01 Aligned_cols=211 Identities=22% Similarity=0.305 Sum_probs=185.6
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEec--ccCCcCc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY--KIPECTR 657 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~--eIp~~~r 657 (941)
+++++++++|++|||||+++++|..+++ .|+.+++|+++|+|++++.|+++|+|++||++|++|+|+++ +||+++|
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRS--GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCS--SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCT
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhcccc--CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCc
Confidence 3688999999999999999999998876 58999999999999999999999999999999999999999 9999999
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccC--ceEEEecCC-CCeEEEEEEec
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVP-GDELKWVRCCT 734 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~-gD~Lv~v~~~~ 734 (941)
+++| +.+|+|.++|+|+++.+++ ++.+++++|++||+||+++++|+.++|+ |+.++++++ +|.|+++..+.
T Consensus 185 ~a~G---v~~i~L~~~d~Vv~~~~~~---~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 185 ATSG---VQGMRFNIDDRLLSLNVVR---EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVD 258 (327)
T ss_dssp TSBC---EESSCCCTTCCEEEEEECC---TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEEC
T ss_pred CCCC---eeeecCCCCCEEEEEEEEC---CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeC
Confidence 9999 7789999999999999985 4668999999999999999999998884 888889876 89999999998
Q ss_pred CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEe
Q 002290 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVS 814 (941)
Q Consensus 735 ~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvT 814 (941)
++++|+++|++|+++||++++||.+||+++||++|+|+++|+|+++..+++. .+.++.+|
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~--------------------~~~~~~~~ 318 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEE--------------------SGDDNAVD 318 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC------------------------------
T ss_pred CCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCC--------------------cceEEEEe
Confidence 8999999999999999999999999999999999999999999999887652 35699999
Q ss_pred cCcc
Q 002290 815 ESGH 818 (941)
Q Consensus 815 e~G~ 818 (941)
++|+
T Consensus 319 ~~g~ 322 (327)
T 3uc1_A 319 ANGA 322 (327)
T ss_dssp ----
T ss_pred cCCc
Confidence 9997
No 19
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.4e-33 Score=315.30 Aligned_cols=201 Identities=20% Similarity=0.304 Sum_probs=184.1
Q ss_pred CCCcEEEEEeccceEEEeecccccccccC--ceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCC
Q 002290 686 AGDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNT 763 (941)
Q Consensus 686 ~~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a 763 (941)
+++++++++|++||+||+++++|+.++|+ |+.+++++++|.|+++..|+++++|+|||++|++|+|++++||.++|.+
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 36789999999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred CCeeee---eCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEE
Q 002290 764 RGSVAM---RLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGY 840 (941)
Q Consensus 764 ~GV~li---~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~i 840 (941)
+|++++ +|.+||+|+++..+.+. ..+.+++++|++||+||+++++|+..+ ++|+.+|
T Consensus 85 ~G~~i~~ll~L~~~e~Iv~~~~~~~~------------------~~~~~ll~~T~~G~vKrt~l~e~~~~~--~~G~~ai 144 (370)
T 3l6v_A 85 RGRPIINWIPLESGERVQAVLPVREY------------------ADNRYVFMATRNGTVKKTPLSEFAFRL--ARGKIAI 144 (370)
T ss_dssp CCEEGGGSCCCCTTCCEEEEEEESCC------------------CTTCEEEEEETTSEEEEEEGGGGCSCC--TTCEESS
T ss_pred CCcCHhhccCCCCCCEEEEEEEeccC------------------CCCcEEEEEeCCCeEEEeEHHHhhccc--CCceEEE
Confidence 998875 57999999999888542 124689999999999999999999864 5799999
Q ss_pred EccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEecC
Q 002290 841 KFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLISV 914 (941)
Q Consensus 841 kl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~~ 914 (941)
+|+++|+|+++.++ +++++|+++|++|+++||++++||.+||+++||++|+|.++|+|+++..+.+
T Consensus 145 ~L~~~d~lv~v~~~--------~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~ 210 (370)
T 3l6v_A 145 NLDEGDALVGVALT--------DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSER 210 (370)
T ss_dssp CCCTTCCEEEEEEE--------CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECC
T ss_pred EeCCCCEEEEEEEe--------CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecc
Confidence 99999999999877 3567899999999999999999999999999999999999999999998864
No 20
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00 E-value=3.2e-32 Score=300.71 Aligned_cols=198 Identities=21% Similarity=0.314 Sum_probs=165.0
Q ss_pred CCcEEEEEeccceEEEeecccccccccC--ceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCC
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~ 764 (941)
++++++++|++||+||+++++|+.++++ |+.+++++++|.++++..|+++++|++||++|++|++++++||.++|.++
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 5788999999999999999999998876 78999999999999999999999999999999999999999999999999
Q ss_pred Ceee---eeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEE
Q 002290 765 GSVA---MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841 (941)
Q Consensus 765 GV~l---i~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ik 841 (941)
|+++ ++|.+||+|+++..+++. ..+++++++|++||+||+++++|+..+| +|+.+++
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~------------------~~~~~ll~~T~~G~~Krt~l~e~~~~~r--~G~~~i~ 141 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEF------------------EEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIK 141 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCC------------------CTTCEEEEEETTSEEEEEEGGGGTTCCT--TCEESSC
T ss_pred CeEhhhccCCCCCCEEEEEEEeccC------------------CCCcEEEEEeCCCeEEEEEHHHhhcccc--CCeEEEE
Confidence 9975 578999999999887542 1246799999999999999999998875 7999999
Q ss_pred ccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEe
Q 002290 842 FSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLI 912 (941)
Q Consensus 842 l~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i 912 (941)
|+++|+|+++..+ +++++|+++|++|+++||++++||.+||.++||++|+|.++|+|+++..+
T Consensus 142 l~~~d~lv~~~~~--------~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~ 204 (307)
T 1zi0_A 142 LVDGDELIGVDLT--------SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP 204 (307)
T ss_dssp CCTTCCEEEEEEE--------CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECC
T ss_pred ECCCCEEEEEEEe--------CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEe
Confidence 9999999999877 35678999999999999999999999999999999999999999998765
No 21
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=100.00 E-value=6.9e-32 Score=293.76 Aligned_cols=195 Identities=21% Similarity=0.267 Sum_probs=178.1
Q ss_pred CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcccc
Q 002290 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA 660 (941)
Q Consensus 581 ~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~ 660 (941)
++++++++|++||+||+++++|. +++ .|..+++|++||+++.+..|+++|+|++||++|++|+|++++||+++|.++
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~-~~~--~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFE-YKA--QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTT-TCS--TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhh-hhc--CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Confidence 57899999999999999999999 664 489999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEE
Q 002290 661 GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVA 740 (941)
Q Consensus 661 G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Il 740 (941)
| +.+|+|.++|+|+++.+++ ++++++++|++||+||+++++|+.++|+|.-.+.+.++|+|+.+..+.++++++
T Consensus 156 G---v~~i~L~~~d~vv~~~~~~---~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~ 229 (276)
T 3no0_A 156 G---VQGIKLEKNDETSGLRIWN---GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELL 229 (276)
T ss_dssp C---EECCCCCTTCCEEEEEEES---SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEE
T ss_pred C---EEEEccCCCCEEEEEEEeC---CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEE
Confidence 9 6789999999999999886 467899999999999999999999988743333347789999999998889999
Q ss_pred EEecCCcEEE--EecccccccCCCCCCeeeeeCCCCCeEEEEEEecc
Q 002290 741 MASQNGMVIL--SSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785 (941)
Q Consensus 741 l~T~~G~vir--~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~ 785 (941)
++|++|+++| |++++||.+||+++||++|+|++ |+|+++..++.
T Consensus 230 ~~t~~G~~ir~~~~~~~i~~~~R~~~Gv~~i~l~~-d~v~~~~~~~~ 275 (276)
T 3no0_A 230 ITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKLED-DEIIKVVIKKS 275 (276)
T ss_dssp EEETTSCEEEEEEEGGGSCBCCTTSCCC-CCCCTT-CCEEEEEEEEE
T ss_pred EEcCCCeEEEeeeCHHHCCCcCCCCCCEEeEEcCC-CEEEEEEEecC
Confidence 9999999999 99999999999999999999999 99999988764
No 22
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=99.98 E-value=8e-32 Score=299.36 Aligned_cols=197 Identities=19% Similarity=0.307 Sum_probs=179.8
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCe
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV 766 (941)
++++++++|++||+||+++++|+.++++ +++++++|.++++..|+++|+|++||++|++|++++++||.++|.++|+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~---~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQ---DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTC---CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCcc---ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 6789999999999999999999887544 5689999999999999999999999999999999999999999999999
Q ss_pred ---eeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc
Q 002290 767 ---VAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843 (941)
Q Consensus 767 ---~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~ 843 (941)
.+++|.+||+|+++..+++. ..+++++++|++||+||+++++|+..+| ++|+.+|+|+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~------------------~~~~~ll~~T~~G~iKrt~l~e~~~~~r-~~G~~ai~l~ 141 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDF------------------ELNGYFLFVTRNGMVKKTELKHYKAQRY-SKPLTGINLK 141 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCT------------------TSSCEEEEEETTSEEEEEEGGGGCCSCC-SSCEECSCCC
T ss_pred ChhhccCCCCCCEEEEEEEeccc------------------CCCceEEEEeCCCeEEEeEHHHhhhccc-cCceEEEEeC
Confidence 55789999999999887541 1136799999999999999999999887 8899999999
Q ss_pred CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 844 ~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
++|+|+++..+ +++++|+++|++|+++||++++||.+||.++||++|+|.++|+|+++..+.
T Consensus 142 e~d~lv~~~~~--------~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~ 203 (323)
T 1wp5_A 142 NDDQVVDVHLT--------DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLIT 203 (323)
T ss_dssp TTCCEEEEEEE--------CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEC
T ss_pred CCCEEEEEEEe--------CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEc
Confidence 99999998877 356789999999999999999999999999999999999999999998774
No 23
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=99.98 E-value=1.3e-31 Score=296.47 Aligned_cols=199 Identities=25% Similarity=0.395 Sum_probs=172.7
Q ss_pred CCcEEEEEeccceEEEeecccccccccC--ceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCC
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTT--GIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR 764 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~--G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~ 764 (941)
++++++++|++||+||+++++|+.++++ |+.+++++++|.++++..|+++++++++|++|+++++++++||.++|.++
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 6789999999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred Cee---eeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEE
Q 002290 765 GSV---AMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYK 841 (941)
Q Consensus 765 GV~---li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ik 841 (941)
|++ +++|++||+|+++..+++. ..+++++++|++|++||+++++|+..+ ++|+.+++
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~------------------~~~~~ll~~T~~G~~kr~~l~~~~~~r--~~G~~~i~ 146 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDL------------------TDDAYLLLTTASGKIARFESTDFKAVK--SRGVIVIK 146 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCC------------------CTTCEEEEEETTSEEEEEEGGGGCC------CEECBC
T ss_pred CcChhhccCCCCCCEEEEEEEeccC------------------CCCCEEEEEeCCCeEEEEEHHHhhccC--CCcEEEEe
Confidence 998 5789999999999887531 124689999999999999999998764 78999999
Q ss_pred ccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcCCCCeEEEEEEec
Q 002290 842 FSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLELSGKIQSASLIS 913 (941)
Q Consensus 842 l~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~~~d~Vvsv~~i~ 913 (941)
|+++|+++++.++ +++++|+++|++|+++||++++||.+||+++||++|+|.++|+|+++..+.
T Consensus 147 L~~~d~lv~~~~~--------~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~ 210 (312)
T 1suu_A 147 LNDKDFVTSAEIV--------FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK 210 (312)
T ss_dssp CCTTCCEEEEEEE--------CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT
T ss_pred cCCCCEEEEEEEe--------CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC
Confidence 9999999999877 356789999999999999999999999999999999999999999988773
No 24
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=99.96 E-value=1.7e-29 Score=271.93 Aligned_cols=188 Identities=13% Similarity=0.215 Sum_probs=165.2
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCe
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV 766 (941)
++++++++|++||+||++...|. ..+++++++|.++++..|+++++|+++|++|++|++++++||.. | ++|+
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r-~~G~ 72 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDID------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R-GQGE 72 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCC------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S-SCCE
T ss_pred CCCEEEEEeCCCEEEEeeCCcCC------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C-CCCe
Confidence 36789999999999999998873 34568999999999999999999999999999999999999886 5 6898
Q ss_pred e---eeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc
Q 002290 767 V---AMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843 (941)
Q Consensus 767 ~---li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~ 843 (941)
+ +|+|.+||+|+++..+.+ +++++++|++||+||++++||+..+|+ |+.+++|+
T Consensus 73 ~i~~~i~L~~~e~Iv~~~~~~~---------------------~~~lll~T~~G~~Kr~~~~e~~~~~r~--G~~~i~L~ 129 (256)
T 1zvt_A 73 PLTGKLTLPPGATVDHMLMESD---------------------DQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLP 129 (256)
T ss_dssp EGGGTCCCCTTCCEEEEECCCT---------------------TCEEEEEBTTSEEEEEEGGGGCCCSTT--CEECBCCC
T ss_pred EeeeeecCCCCCEEEEEEEeCC---------------------CCEEEEEeCCCeEEEeEHHHhcccCcC--ceEEEEEC
Confidence 4 578999999999966532 367999999999999999999887765 66778899
Q ss_pred CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcC------CCCeEEEEEEec
Q 002290 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE------LSGKIQSASLIS 913 (941)
Q Consensus 844 ~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~------~~d~Vvsv~~i~ 913 (941)
++|+|+++.++. +++++|+++|++|+++||++++||.+|| ++||++|+|. ++|+|+++..+.
T Consensus 130 ~~d~lv~~~~~~-------~~~~~i~l~T~~G~~lrf~~~ei~~~gR-a~GV~~i~L~~~~~k~~~d~Vv~~~~~~ 197 (256)
T 1zvt_A 130 ENAHVMPPVVIE-------DASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLP 197 (256)
T ss_dssp TTCCBCCCEECC-------CTTCEEEEEETTSEEEEEEGGGSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC
T ss_pred CCCEEEEEEEec-------CCCCEEEEEcCCCeEEEEEHHHCCCcCc-cCCeEEEEcccccCCCCCCEEEEEEEEC
Confidence 999998887651 2457899999999999999999999999 9999999999 999999998774
No 25
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=99.92 E-value=6e-26 Score=223.35 Aligned_cols=108 Identities=42% Similarity=0.634 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcChHHHHHHHhcCCChHHHHHHHHH----------------------
Q 002290 433 LDFRCSVVERRARFKLSQVKERRHIVEGIMVGLDNLDRVIRIVREAPSNSTASAALKD---------------------- 490 (941)
Q Consensus 433 ~~~R~~~~~rR~~~~L~k~~~r~~ilegli~~~~~iD~vI~iIr~s~~~~~a~~~L~~---------------------- 490 (941)
+-||.+|++||++|+|+|+++|+||++|+++|++|||+||++||+|+++++|+++|++
T Consensus 14 ~~hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~~eAk~~Lm~~~w~~~~v~~~~~~~~~~~~~p 93 (156)
T 3ku8_A 14 LVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 93 (156)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTTTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHhccccchhHHHHHHHhhhhcccc
Confidence 5699999999999999999999999999999999999999999999999999999994
Q ss_pred ------------HhCCCHHHHHHHHhccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q 002290 491 ------------EFKLSEKQADAILDMNLRRLTMLERKKFVDESKTLMEQILKLEELLSSRK 540 (941)
Q Consensus 491 ------------~f~~s~~qaeaIL~M~L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~ 540 (941)
.|+||+.||+|||+|+|++||++|++||.+|+++|.++|++|++||+|++
T Consensus 94 ~~~~~~~~~~~~~f~LSe~QA~AILdmRL~rLT~LE~~ki~~E~~eL~~~I~~l~~IL~s~~ 155 (156)
T 3ku8_A 94 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 155 (156)
T ss_dssp TTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred cccchhccccccCCCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999999999999999999999999999999975
No 26
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=99.89 E-value=2.6e-23 Score=245.85 Aligned_cols=188 Identities=13% Similarity=0.215 Sum_probs=150.6
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCe
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGS 766 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV 766 (941)
+++.+|++|++||+||+.... .|...++++++|.+..++.|+++|.+++||++|++|++++++||.. .++|.
T Consensus 471 ~e~v~v~ls~~GyiKr~~g~~------~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~--~~~G~ 542 (716)
T 1zvu_A 471 SEPVTIVLSQMGWVRSAKGHD------IDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGE 542 (716)
T ss_dssp CCCCCEEEETTTEEEECCC---------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC--C---C
T ss_pred CceEEEEEecCCeEeccCCCC------cCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccc--cccCe
Confidence 577899999999999952111 1346788999999999999999999999999999999999999985 47898
Q ss_pred ee---eeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc
Q 002290 767 VA---MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS 843 (941)
Q Consensus 767 ~l---i~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~ 843 (941)
++ +.|.+||+|+++..+.+ +.+++++|++|++||+++++|...+ ++|+.+++|+
T Consensus 543 ~i~~ll~l~~~e~i~~~~~~~~---------------------~~~l~~~T~~G~vk~~~l~~~~~~~--~~g~~ai~L~ 599 (716)
T 1zvu_A 543 PLTGKLTLPPGATVDHMLMESD---------------------DQKLLMASDAGYGFVCTFNDLVARN--RAGKALITLP 599 (716)
T ss_dssp BSTTTSCCCTTCCEEEEECCCT---------------------TCEEEEEBTTSEEEEEEGGGGCCCS--TTCEECBCCC
T ss_pred eHHhccCCCCCCeEEEEEEecC---------------------CceEEEEeCCceEEEecHHHhcccC--ccceEEEeeC
Confidence 85 56789999999977643 4689999999999999999998765 5689999999
Q ss_pred CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccccccCCceEEEEcC------CCCeEEEEEEec
Q 002290 844 AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQARYARGVILMRLE------LSGKIQSASLIS 913 (941)
Q Consensus 844 ~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~gR~a~GV~lmkL~------~~d~Vvsv~~i~ 913 (941)
++|+++++..+. +++++|+++|++|+++||+++++|.+|| ++||++|+|. ++|+|+++.++.
T Consensus 600 ~~d~lv~~~~~~-------~~~~~v~l~t~~g~~lrf~~~~v~~~gr-~~GV~~i~l~~~~~k~~~d~v~~~~~~~ 667 (716)
T 1zvu_A 600 ENAHVMPPVVIE-------DASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLP 667 (716)
T ss_dssp TTCCBCCCEECC-------CTTCEEEEEETTSEEEEEESTTSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC
T ss_pred CCCEEEEEEEec-------CCCCEEEEEeCCCeEEEEEHHHCCccCc-ccCeEEEEecccccCCCCCEEEEEEEec
Confidence 999998887651 2467899999999999999999999999 9999999999 899999998774
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.25 E-value=8.7 Score=39.65 Aligned_cols=228 Identities=9% Similarity=0.031 Sum_probs=127.3
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcC
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT 656 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~ 656 (941)
.-++..++++.+.+|.|+-.....-. ......+.. ...+..+....+...++..+.+|.++.+.. ..
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~---~~-- 172 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPT-------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL---HN-- 172 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET---TT--
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCC-------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC---CC--
Confidence 45677888999999999877654321 011122222 233444444445566777778888765543 22
Q ss_pred ccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCC
Q 002290 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736 (941)
Q Consensus 657 r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~ 736 (941)
|.++. .+. .....|.++.... ++..++..+.+|.++.-++..-. ....+.....+..+....+.
T Consensus 173 ----~~~~~-~~~-~~~~~i~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 173 ----QTLVR-QFQ-GHTDGASCIDISN---DGTKLWTGGLDNTVRSWDLREGR-------QLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp ----TEEEE-EEC-CCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTE-------EEEEEECSSCEEEEEECTTS
T ss_pred ----Cceee-eee-cccCceEEEEECC---CCCEEEEEecCCcEEEEECCCCc-------eEeeecCCCceEEEEECCCC
Confidence 21111 111 1234566555433 56789999999999988765422 22222333445555445556
Q ss_pred CeEEEEecCCcEEEEecccccccCCCCCCeeeeeC-CCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEec
Q 002290 737 DLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRL-KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSE 815 (941)
Q Consensus 737 d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L-~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe 815 (941)
..+++.+.+|.+..+....-. ...+ .....|.++...++ +..++..+.
T Consensus 237 ~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~---------------------~~~l~~~~~ 285 (337)
T 1gxr_A 237 EWLAVGMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYC---------------------GKWFVSTGK 285 (337)
T ss_dssp SEEEEEETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTT---------------------SSEEEEEET
T ss_pred CEEEEEcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCC---------------------CCEEEEecC
Confidence 677777888887777654211 1122 22345666655443 357888889
Q ss_pred CccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEe
Q 002290 816 SGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881 (941)
Q Consensus 816 ~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~ 881 (941)
+|.++...+..-. ..........+.++.+. .+...++..+..|.+..++
T Consensus 286 dg~i~~~~~~~~~---------~~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 286 DNLLNAWRTPYGA---------SIFQSKESSSVLSCDIS--------VDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp TSEEEEEETTTCC---------EEEEEECSSCEEEEEEC--------TTSCEEEEEETTSCEEEEE
T ss_pred CCcEEEEECCCCe---------EEEEecCCCcEEEEEEC--------CCCCEEEEecCCCeEEEEE
Confidence 9988888765321 11222334455444432 2345677777788776554
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=92.50 E-value=13 Score=39.70 Aligned_cols=192 Identities=12% Similarity=0.028 Sum_probs=105.0
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC--------------CCceeEEEEeeCCceEEEEccCCe
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV--------------NDAMSDFIVCRAHDHVLYFSDRGI 643 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke--------------~D~l~~~~~~~~~d~ll~fT~~G~ 643 (941)
.-++..+++..+.+|.|+-.......... ...... +..+..+.. .....++..+.+|.
T Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 228 (425)
T 1r5m_A 157 WNKDGTHIISMDVENVTILWNVISGTVMQ-------HFELKETGGSSINAENHSGDGSLGVDVEW-VDDDKFVIPGPKGA 228 (425)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTTEEEE-------EECCC---------------CCCBSCCEE-EETTEEEEECGGGC
T ss_pred ECCCCCEEEEEecCCeEEEEECCCCcEEE-------EeeccccCccceeeccccCCcceeeEEEE-cCCCEEEEEcCCCe
Confidence 34677788899999999876654321110 001111 011323322 34567888899998
Q ss_pred EEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC
Q 002290 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723 (941)
Q Consensus 644 v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~ 723 (941)
++.+.... |.++.. +. .....|..+.... ++.+++..+.+|.++.-.+..-.. +..+. ..
T Consensus 229 i~~~d~~~---------~~~~~~-~~-~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~-~~ 288 (425)
T 1r5m_A 229 IFVYQITE---------KTPTGK-LI-GHHGPISVLEFND---TNKLLLSASDDGTLRIWHGGNGNS-----QNCFY-GH 288 (425)
T ss_dssp EEEEETTC---------SSCSEE-EC-CCSSCEEEEEEET---TTTEEEEEETTSCEEEECSSSBSC-----SEEEC-CC
T ss_pred EEEEEcCC---------Cceeee-ec-cCCCceEEEEECC---CCCEEEEEcCCCEEEEEECCCCcc-----ceEec-CC
Confidence 87665432 111111 11 1234555554432 567899999999998877654221 11121 12
Q ss_pred CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCCCCCCC
Q 002290 724 GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNV 802 (941)
Q Consensus 724 gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~ 802 (941)
...+..+....+. .++..+.+|.+..+.... |..+..+.. ...|.++...++
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~s~~----------------- 341 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ---------NTLLALSIVDGVPIFAGRISQD----------------- 341 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTT---------TEEEEEEECTTCCEEEEEECTT-----------------
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCC---------CcEeEecccCCccEEEEEEcCC-----------------
Confidence 3344444444333 677778888777665432 222222222 345555554443
Q ss_pred CCCCCCcEEEEecCccEEEEeCCCcc
Q 002290 803 KGSSGPWLLFVSESGHGKRVPLSSFR 828 (941)
Q Consensus 803 ~~~~~~~lllvTe~G~gKR~~lse~~ 828 (941)
+..++..+.+|.++...+....
T Consensus 342 ----~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 ----GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ----SSEEEEEETTSCEEEEECHHHH
T ss_pred ----CCEEEEEECCCeEEEEECCCCc
Confidence 3578888889988888876543
No 29
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.53 E-value=31 Score=37.40 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=119.8
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
.-++..++++.+.+|.|+-....... ....+.....-+..+.. +.+.++..+.+|.+... +++..+
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~---d~~~~~- 207 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQT---------KLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHH---DVRIAN- 207 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEE---ETTSSS-
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCe---------EEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEE---ecccCc-
Confidence 34567788888888888866553321 11222222222222222 45667777778876644 443221
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCC
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTND 736 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~ 736 (941)
.. ...+. .....|.++.... ++.+++..+.+|.++.-++.. +.....+.. ...+..+......
T Consensus 208 ----~~-~~~~~-~~~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 208 ----HQ-IGTLQ-GHSSEVCGLAWRS---DGLQLASGGNDNVVQIWDARS-------SIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp ----CE-EEEEE-CCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTC-------SSEEEEECCCSSCCCEEEECTTS
T ss_pred ----ce-eeEEc-CCCCCeeEEEEcC---CCCEEEEEeCCCeEEEccCCC-------CCccEEecCCcceEEEEEECCCC
Confidence 11 11111 1234566655433 567899999999999887754 222223332 2334444334434
Q ss_pred CeEEEEe---cCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEE
Q 002290 737 DLVAMAS---QNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFV 813 (941)
Q Consensus 737 d~Ill~T---~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllv 813 (941)
..+++.. .+|.+..+.... |..+..+..+..|.++...++ +..++.+
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~~---------~~~~~~~~~~~~v~~~~~s~~---------------------~~~l~~~ 321 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAAT---------GARVNTVDAGSQVTSLIWSPH---------------------SKEIMST 321 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETTT---------CCEEEEEECSSCEEEEEECSS---------------------SSEEEEE
T ss_pred CCEEEEecCCCCCEEEEEECCC---------CCEEEEEeCCCcEEEEEECCC---------------------CCeEEEE
Confidence 4555543 477766665431 223333444556666665543 3456665
Q ss_pred e--cCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCc
Q 002290 814 S--ESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 814 T--e~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~e 884 (941)
+ .+|.++...+..- .......+.. ...+.++.+. .+...++..+..|.+...++.+
T Consensus 322 ~g~~dg~i~v~~~~~~-------~~~~~~~~~~h~~~v~~~~~s--------~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSS-------GLTKQVDIPAHDTRVLYSALS--------PDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ECTTTCEEEEEEEETT-------EEEEEEEEECCSSCCCEEEEC--------TTSSEEEEECTTSEEEEEECCC
T ss_pred eecCCCcEEEEecCCc-------cceeEEEecCCCCCEEEEEEC--------CCCCEEEEEeCCCcEEEEECCC
Confidence 4 6888887765431 1122223332 2334333332 2234566777778777776654
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=87.47 E-value=32 Score=36.48 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=103.6
Q ss_pred ceEEEEccCceEEEeCCCccccccCCCCCcccccccC------CCceeEEEEe----eCCce-EEEEccCCeEEEEEecc
Q 002290 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV------NDAMSDFIVC----RAHDH-VLYFSDRGIVYSARAYK 651 (941)
Q Consensus 583 ~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke------~D~l~~~~~~----~~~d~-ll~fT~~G~v~~~~~~e 651 (941)
.+++..+.+|.|+-.....-.... -.....+.. ++.+..+... .+... ++..+.+|.++......
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETK----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTC----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cEEEEEcCCCCEEEEEccCCcccc----cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 788889999999876554322100 000112222 2455555555 55666 77777889887776654
Q ss_pred cCCcCccccCcccc-----cccc-----cCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEec
Q 002290 652 IPECTRNAAGTPLV-----QILS-----LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQL 721 (941)
Q Consensus 652 Ip~~~r~a~G~pl~-----~~i~-----L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikL 721 (941)
.... ..+..+. .+.. -.....|.++.... ++ .++..+.+|.++-.++... .....+
T Consensus 158 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~-------~~~~~~ 223 (397)
T 1sq9_A 158 FADE---SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE---RG-LIATGFNNGTVQISELSTL-------RPLYNF 223 (397)
T ss_dssp SSSH---HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT---TS-EEEEECTTSEEEEEETTTT-------EEEEEE
T ss_pred cccc---cccceeeccCcceeeeeeccccCCCCCceEEEECC---Cc-eEEEEeCCCcEEEEECCCC-------ceeEEE
Confidence 2111 0011111 1100 11234455544332 45 8888899999998877542 222223
Q ss_pred CC-------CCeEEEEEEecCCCeEEEEecC---CcEEEEecccccccCCCCCCeeeeeCC--------------CCCeE
Q 002290 722 VP-------GDELKWVRCCTNDDLVAMASQN---GMVILSSCDIIRSLSRNTRGSVAMRLK--------------DGDKM 777 (941)
Q Consensus 722 k~-------gD~Lv~v~~~~~~d~Ill~T~~---G~vir~~v~eI~~~gR~a~GV~li~L~--------------~gD~I 777 (941)
.. ...+..+....+...++..+.+ |.+..+.... |..+..+. ....|
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---------GERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---------CCEEEEECBC--------CCBSBSSCE
T ss_pred eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC---------CcccceeccCcccccccccccccCCcE
Confidence 22 4445555444455666666777 6666665432 11222222 23456
Q ss_pred EEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 778 vsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
.++...++ +..++..+.+|.++...+..
T Consensus 295 ~~~~~~~~---------------------~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 295 MSLSFNDS---------------------GETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEECSS---------------------SSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCC---------------------CCEEEEEeCCCeEEEEEcCC
Confidence 66555443 35788888999888887754
No 31
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=85.71 E-value=8.3 Score=40.17 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=32.8
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCcc
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI 885 (941)
+..|++.|.+|...++..+ + +-+..+.+. +..+....+ +.+..+++.|.+|.+...+...-
T Consensus 265 ~g~l~v~t~~ggl~~~d~~-----g---~~~~~~~~~--~~~~~~~~~--------d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 265 TDTIYFGSYDGHLYAINPD-----G---TEKWNFETG--SWIIATPVI--------DENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp TSCEEEECTTCEEEEECTT-----S---CEEEEEECS--SCCCSCCEE--------CTTCCEEEECTTSCEEEEEC---
T ss_pred CCeEEEecCCCCEEEECCC-----C---cEEEEEEcC--CccccceEE--------cCCCEEEEEcCCCeEEEEecccc
Confidence 4678899988776666421 1 111222222 222222222 23567999999998887776543
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=85.55 E-value=35 Score=34.95 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccc-cCCCceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL-RVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 573 ~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~L-ke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
+.....-++..+++..+ +|.|+--....-.... -...... ...+.+..+....+...++..+.+|.+......
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~- 127 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA- 127 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC-
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC-
Confidence 33334456777888877 9999876554311110 0011111 233455555555555667777778877655432
Q ss_pred cCCcCccccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEE
Q 002290 652 IPECTRNAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKW 729 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~ 729 (941)
.... .....+ .....|.++.... ++.+++..+.+|.++..++... .....+.. .+.+..
T Consensus 128 --~~~~-------~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 128 --APTP-------RIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASC 188 (337)
T ss_dssp --CC---------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEE
T ss_pred --CCCc-------ceeeecccCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCceEE
Confidence 2110 001111 2334555554432 5678899999999988776532 22223332 344555
Q ss_pred EEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCc
Q 002290 730 VRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809 (941)
Q Consensus 730 v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (941)
+....+...++..+.+|.+..+.... |.....+.....+.++...++ +..
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~v~~~~~s~~---------------------~~~ 238 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLRE---------GRQLQQHDFTSQIFSLGYCPT---------------------GEW 238 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECSSCEEEEEECTT---------------------SSE
T ss_pred EEECCCCCEEEEEecCCcEEEEECCC---------CceEeeecCCCceEEEEECCC---------------------CCE
Confidence 54444566777778888887776542 222222333445665554443 357
Q ss_pred EEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCc
Q 002290 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 810 lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~e 884 (941)
+++.+.+|.+....+..-.. ..+.. ...+.++.+. .+...++..+..|.+..+++..
T Consensus 239 l~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDK----------YQLHLHESCVLSLKFA--------YCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEEEETTSCEEEEETTSSCE----------EEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEcCCCcEEEEECCCCCe----------EEEcCCccceeEEEEC--------CCCCEEEEecCCCcEEEEECCC
Confidence 88888899888887654211 22222 2344443332 2234677777788877777653
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=83.65 E-value=44 Score=34.59 Aligned_cols=161 Identities=10% Similarity=0.026 Sum_probs=89.5
Q ss_pred cccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccC-----CeEEEEEec
Q 002290 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR-----GIVYSARAY 650 (941)
Q Consensus 576 ~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~-----G~v~~~~~~ 650 (941)
...-++..+++..+.+|.|+-..+... .....+.....+..+....+...++..+.. |.+..+...
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 80 IDVDCFTKYCVTGSADYSIKLWDVSNG---------QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTC---------CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 334567888999999999987765432 222233445556666665666666666666 777766654
Q ss_pred ccCCcC--ccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeE
Q 002290 651 KIPECT--RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDEL 727 (941)
Q Consensus 651 eIp~~~--r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~L 727 (941)
.-.... ....+.++.........+.+..+.... ++.++++.+.+|.+...++..- +.....+. ....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWST---KGKYIIAGHKDGKISKYDVSNN------YEYVDSIDLHEKSI 221 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG---GGCEEEEEETTSEEEEEETTTT------TEEEEEEECCSSCE
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcC---CCCEEEEEcCCCEEEEEECCCC------cEeEEEEecCCCce
Confidence 321110 011111222222222223555554432 5678899999999988776531 11222222 23345
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEecc
Q 002290 728 KWVRCCTNDDLVAMASQNGMVILSSCD 754 (941)
Q Consensus 728 v~v~~~~~~d~Ill~T~~G~vir~~v~ 754 (941)
..+....+...++..+.+|.+..+...
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCceEEEEECC
Confidence 545444456667777788887766653
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=82.89 E-value=46 Score=34.22 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=99.2
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
.-++..+++..+.+|.|+-.......... ......+.............++..+.+|.+... ++.....
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~---d~~~~~~ 162 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCK 162 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEE---CTTSCEE
T ss_pred ECCCCCEEEEEcccccceEEeecccceee--------eecCCCCceeEEEEeecCccceeecCCCeEEEE---EeCCCce
Confidence 34677888889999999876554322111 111222333333344455566666677766543 3322110
Q ss_pred cccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecC
Q 002290 658 NAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTN 735 (941)
Q Consensus 658 ~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~ 735 (941)
....+ ...+.+..+.. .......+++..+.+|.++.-++... .....+.. .+.+..+....+
T Consensus 163 --------~~~~~~~~~~~v~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~-------~~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 163 --------YTVQDESHSEWVSCVRF-SPNSSNPIIVSCGWDKLVKVWNLANC-------KLKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp --------EEECSSSCSSCEEEEEE-CSCSSSCEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTT
T ss_pred --------EEEEeccccCcccceEE-ccCCCCcEEEEEcCCCEEEEEECCCC-------ceeeEecCCCCcEEEEEECCC
Confidence 01111 12334433332 22224556777888898887665432 22223332 334444443444
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEec
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSE 815 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe 815 (941)
...++..+.+|.+....... +..+..+...+.|..+...+ +..++..+.
T Consensus 227 ~~~l~s~s~Dg~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~----------------------~~~~~~~~~ 275 (340)
T 4aow_A 227 GSLCASGGKDGQAMLWDLNE---------GKHLYTLDGGDIINALCFSP----------------------NRYWLCAAT 275 (340)
T ss_dssp SSEEEEEETTCEEEEEETTT---------TEEEEEEECSSCEEEEEECS----------------------SSSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEecc---------CceeeeecCCceEEeeecCC----------------------CCceeeccC
Confidence 55666677888876665432 22334444455666554443 246788888
Q ss_pred CccEEEEeCC
Q 002290 816 SGHGKRVPLS 825 (941)
Q Consensus 816 ~G~gKR~~ls 825 (941)
+|.++...+.
T Consensus 276 d~~i~iwd~~ 285 (340)
T 4aow_A 276 GPSIKIWDLE 285 (340)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEECC
Confidence 8888777654
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=82.54 E-value=44 Score=33.79 Aligned_cols=256 Identities=13% Similarity=0.101 Sum_probs=141.5
Q ss_pred CCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEec
Q 002290 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650 (941)
Q Consensus 572 ~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~ 650 (941)
.+..... ++..+++..+.+|.|+--...... ....+.. ...+..+....+...++..+.+|.+......
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 3444444 788899999999999876553321 1111222 3345555555667777778888988766655
Q ss_pred ccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEE
Q 002290 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKW 729 (941)
Q Consensus 651 eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~ 729 (941)
+... +.++... . .....|.++.. ++.+++..+.+|.++.-+. +.....+. ....+..
T Consensus 90 ~~~~------~~~~~~~-~-~~~~~i~~~~~-----~~~~l~~~~~d~~i~~~d~---------~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 90 ATSG------EDPLYTL-I-GHQGNVCSLSF-----QDGVVISGSWDKTAKVWKE---------GSLVYNLQAHNASVWD 147 (313)
T ss_dssp CCTT------SCC-CEE-C-CCSSCEEEEEE-----ETTEEEEEETTSEEEEEET---------TEEEEEEECCSSCEEE
T ss_pred ecCC------CCcccch-h-hcccCEEEEEe-----cCCEEEEEeCCCCEEEEcC---------CcEEEecccCCCceeE
Confidence 4322 1111111 1 23445655544 3568999999999988761 11222222 2334544
Q ss_pred EEEec-CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCC
Q 002290 730 VRCCT-NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808 (941)
Q Consensus 730 v~~~~-~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (941)
+.... +.+.++..+.+|.+..+... ..+..+.......|.++...++ .
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~~~~~~i~~~~~~~~----------------------~ 196 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQND---------KVIKTFSGIHNDVVRHLAVVDD----------------------G 196 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETT---------EEEEEECSSCSSCEEEEEEEET----------------------T
T ss_pred EEEccCCCCEEEEEECCCCEEEEecC---------ceEEEEeccCcccEEEEEEcCC----------------------C
Confidence 44444 56778888888988777521 1122233223455666655543 3
Q ss_pred cEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccc--
Q 002290 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDIS-- 886 (941)
Q Consensus 809 ~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~-- 886 (941)
.++..+.+|.++...+..-. -+..++. ....+.++.+. .+..++..+..|.+..+++..-.
T Consensus 197 ~~~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~i~~~~~~---------~~~~l~~~~~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 197 HFISCSNDGLIKLVDMHTGD-------VLRTYEG-HESFVYCIKLL---------PNGDIVSCGEDRTVRIWSKENGSLK 259 (313)
T ss_dssp EEEEEETTSEEEEEETTTCC-------EEEEEEC-CSSCEEEEEEC---------TTSCEEEEETTSEEEEECTTTCCEE
T ss_pred eEEEccCCCeEEEEECCchh-------hhhhhhc-CCceEEEEEEe---------cCCCEEEEecCCEEEEEECCCCcee
Confidence 38888999998888775321 1222221 22344433332 22257788888888888765432
Q ss_pred -cccccCCceEEEEcCCCCeEE
Q 002290 887 -IQARYARGVILMRLELSGKIQ 907 (941)
Q Consensus 887 -~~gR~a~GV~lmkL~~~d~Vv 907 (941)
........+..+...+++.++
T Consensus 260 ~~~~~~~~~i~~~~~~~~~~~~ 281 (313)
T 3odt_A 260 QVITLPAISIWSVDCMSNGDII 281 (313)
T ss_dssp EEEECSSSCEEEEEECTTSCEE
T ss_pred EEEeccCceEEEEEEccCCCEE
Confidence 222223355666665555444
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=78.95 E-value=76 Score=34.29 Aligned_cols=217 Identities=9% Similarity=0.068 Sum_probs=117.8
Q ss_pred CCcccccc-CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 573 LDDIDIIP-NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 573 ~~~~dlI~-~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
+.....-+ +..+++..+.+|.|+--......... .-.....+.-...+..+....+.+.|+..+.+|.+.......
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCc---ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 33334456 77899999999999866543311000 000112223345666666666677777788888876665431
Q ss_pred --cCCcCccccCcccccccccC---CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCC
Q 002290 652 --IPECTRNAAGTPLVQILSLS---DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGD 725 (941)
Q Consensus 652 --Ip~~~r~a~G~pl~~~i~L~---~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD 725 (941)
-....+...|. .+..+.+. .++.++.+..... +++.+++..+.+|.++--++..... +..+... ..+
T Consensus 143 ~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~h~~ 215 (437)
T 3gre_A 143 YQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLER-----LQIIENSPRHG 215 (437)
T ss_dssp EEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCE-----EEEEECCGGGC
T ss_pred ccCCceeeccccc-eeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCee-----eEEEccCCCCC
Confidence 01111112222 22333333 4566666653321 3567899999999999887754221 1222221 134
Q ss_pred eEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeee--eeCCCCCeEEEEEEecccccccccCCCCCCCCCCC
Q 002290 726 ELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA--MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803 (941)
Q Consensus 726 ~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l--i~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~ 803 (941)
.+..+....+...++..+.+|.+....... |..+ +.+.....|.++...+...
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~s---------------- 270 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRF---------NVLIRSWSFGDHAPITHVEVCQFYG---------------- 270 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTT---------TEEEEEEBCTTCEEEEEEEECTTTC----------------
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCC---------ccEEEEEecCCCCceEEEEeccccC----------------
Confidence 555555444566677788888877665432 2233 2333344555554443210
Q ss_pred CCCCCcEEEEecCccEEEEeCC
Q 002290 804 GSSGPWLLFVSESGHGKRVPLS 825 (941)
Q Consensus 804 ~~~~~~lllvTe~G~gKR~~ls 825 (941)
..+..++..+.+|.++...+.
T Consensus 271 -~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 271 -KNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp -TTEEEEEEESTTEEEEEEETT
T ss_pred -CCccEEEEEcCCCcEEEEEcC
Confidence 012356777788888887765
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=78.22 E-value=83 Score=34.30 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCC
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRG 765 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~G 765 (941)
++.+++..+.+|.++.-++.... ....+.. .+.+..+.. +...++..+.+|.+..+.... |
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~---------~ 326 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCE-------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---------G 326 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---------C
T ss_pred CCCEEEEEeCCCeEEEEECCcCc-------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC---------C
Confidence 35688999999999887765422 2222322 233333322 356777778888877766532 3
Q ss_pred eeeeeCCCC-CeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 766 SVAMRLKDG-DKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 766 V~li~L~~g-D~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
..+..+... ..|.++.. + +..++..+.+|.++...+..
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~---------------------~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--D---------------------NKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--C---------------------SSEEEEEETTSCEEEEEHHH
T ss_pred CEEEEEeCCcCcEEEEEe--c---------------------CCEEEEEeCCCcEEEEECCC
Confidence 333333322 23443322 1 35788889999999887754
No 38
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=77.18 E-value=5.8 Score=35.76 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=40.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHh
Q 002290 507 LRRLTMLERKKFVDESKTLMEQILKLEELLSSRKNILQ---LIEQEVIELKNRF 557 (941)
Q Consensus 507 L~rLT~le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~---~i~~EL~elk~kf 557 (941)
|.+....-...|+.|+++|.++|..|+.+.+.-..+++ ++..||..+.+.|
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555678888999999999999888777666554 7899999999988
No 39
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.70 E-value=14 Score=38.40 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=15.6
Q ss_pred CCcEEEEecCccEEEEeCCCcc
Q 002290 807 GPWLLFVSESGHGKRVPLSSFR 828 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~ 828 (941)
+..|++.|.+|.....+.....
T Consensus 305 ~g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 305 NGTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TCCEEEECTTSCEEEEEC----
T ss_pred CCEEEEEcCCCeEEEEeccccc
Confidence 4679999999999888876543
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=74.39 E-value=86 Score=32.57 Aligned_cols=249 Identities=10% Similarity=-0.014 Sum_probs=131.8
Q ss_pred CCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 573 ~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
+.....-++..++++.+.+|.|+-.....-.. .....+.. .+.+..+....+.+.|+..+.+|.+......
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~- 82 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK- 82 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-
Confidence 33334456788888998999988765432110 01122322 2345555555566667777778877665542
Q ss_pred cCCcCccccCcccccccc-cCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceE-EEec-CC-CCeE
Q 002290 652 IPECTRNAAGTPLVQILS-LSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGII-AIQL-VP-GDEL 727 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~-L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~-~ikL-k~-gD~L 727 (941)
.. +. ...+. ......|.++.... ++.+++..+.+|.++--.+..-. ... ...+ .. .+.+
T Consensus 83 --~~------~~-~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 83 --GR------TW-KPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQEN-----DWWVCKHIKKPIRSTV 145 (372)
T ss_dssp --TT------EE-EEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTT-----TEEEEEEECTTCCSCE
T ss_pred --CC------ee-eeeEEeecCCCceeEEEECC---CCCEEEEEeCCCEEEEEEecCCC-----cceeeeeeecccCCCe
Confidence 11 10 11111 12344565554432 56789999999998876554321 111 1112 22 3455
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEecccccccC---------CCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCC
Q 002290 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLS---------RNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPED 797 (941)
Q Consensus 728 v~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~g---------R~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~ 797 (941)
..+....+...++..+.+|.+..+.+..-.... +...|..+..+.. ...|.++...++
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 213 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------------ 213 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS------------
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC------------
Confidence 555555556677777888988877753211110 1223444444532 334666555443
Q ss_pred CCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeE
Q 002290 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTV 877 (941)
Q Consensus 798 ~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~ 877 (941)
+..++..+.+|.++...+.... -+..+.. ....+.++.+. .+..+++....|.+
T Consensus 214 ---------~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~-~~~~v~~~~~~---------~~~~~l~~~~d~~i 267 (372)
T 1k8k_C 214 ---------GSRVAWVSHDSTVCLADADKKM-------AVATLAS-ETLPLLAVTFI---------TESSLVAAGHDCFP 267 (372)
T ss_dssp ---------SSEEEEEETTTEEEEEEGGGTT-------EEEEEEC-SSCCEEEEEEE---------ETTEEEEEETTSSC
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCc-------eeEEEcc-CCCCeEEEEEe---------cCCCEEEEEeCCeE
Confidence 3578888999998888765321 1222221 12344444332 13345556677777
Q ss_pred EEEecCc
Q 002290 878 NRIKVRD 884 (941)
Q Consensus 878 iR~~v~e 884 (941)
..+++..
T Consensus 268 ~i~~~~~ 274 (372)
T 1k8k_C 268 VLFTYDS 274 (372)
T ss_dssp EEEEEET
T ss_pred EEEEccC
Confidence 7666654
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=73.26 E-value=1e+02 Score=32.82 Aligned_cols=202 Identities=8% Similarity=0.020 Sum_probs=108.0
Q ss_pred CCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 572 ~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
.+.....-++...++..+.+|.|+--........ ..... ....+..+....+...++..+.+|.+.....
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-------~~~~~-~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~-- 135 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-------HAVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVYPL-- 135 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------EEEEC-SSSCCCEEEECTTSSEEEEESTTSEEEEEEC--
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------eEEec-CCCCEEEEEECCCCCEEEEeeCCCCEEEEEE--
Confidence 3444445578889999999999997654332211 11111 2234445555556666777777777654433
Q ss_pred cCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEE
Q 002290 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWV 730 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v 730 (941)
........... ...+. .-...|.++.... ++..++..+.+|.++--++.. |.....+.. ...+..+
T Consensus 136 -~~~~~~~~~~~-~~~~~-~h~~~v~~~~~~~---~~~~l~t~s~D~~v~lwd~~~-------~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 136 -TFDKNENMAAK-KKSVA-MHTNYLSACSFTN---SDMQILTASGDGTCALWDVES-------GQLLQSFHGHGADVLCL 202 (354)
T ss_dssp -CCCTTCCSGGG-CEEEE-ECSSCEEEEEECS---SSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEE
T ss_pred -ecccccccccc-ceeee-ccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEeCCC-------CeEEEEEcCCCCCeEEE
Confidence 22110000000 11111 1233455544332 566899999999999877643 222222322 2233333
Q ss_pred EEec--CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCCCCCCCCCCCC
Q 002290 731 RCCT--NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSG 807 (941)
Q Consensus 731 ~~~~--~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (941)
.... +...++..+.+|.+....... |..+..+.. ...|.++...|+ +
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~---------~~~~~~~~~h~~~v~~v~~~p~---------------------~ 252 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRS---------GQCVQAFETHESDVNSVRYYPS---------------------G 252 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTT---------------------S
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCC---------CcEEEEecCCCCCeEEEEEeCC---------------------C
Confidence 3222 235677778889877776432 222222322 344666655443 3
Q ss_pred CcEEEEecCccEEEEeCCC
Q 002290 808 PWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 808 ~~lllvTe~G~gKR~~lse 826 (941)
..++..+.+|.++...+..
T Consensus 253 ~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp SEEEEEETTSCEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCC
Confidence 5788889999998887653
No 42
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=72.98 E-value=82 Score=31.70 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=126.3
Q ss_pred ccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCC
Q 002290 575 DIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPE 654 (941)
Q Consensus 575 ~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~ 654 (941)
....-++..+++..+.+|.|+-..+..... +.....+......+..+.. ..+.++..+.+|.+....
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d------ 130 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSG------EDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK------ 130 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTT------SCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE------
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCC------CCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc------
Confidence 334457888999999999998666544321 1112223322222222222 456777778888877664
Q ss_pred cCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEec
Q 002290 655 CTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734 (941)
Q Consensus 655 ~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~ 734 (941)
.+.++.. +. .....+..+.... .+...++..+.+|.++.-+... ....+.......+..+....
T Consensus 131 -----~~~~~~~-~~-~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~~~ 194 (313)
T 3odt_A 131 -----EGSLVYN-LQ-AHNASVWDAKVVS--FSENKFLTASADKTIKLWQNDK-------VIKTFSGIHNDVVRHLAVVD 194 (313)
T ss_dssp -----TTEEEEE-EE-CCSSCEEEEEEEE--TTTTEEEEEETTSCEEEEETTE-------EEEEECSSCSSCEEEEEEEE
T ss_pred -----CCcEEEe-cc-cCCCceeEEEEcc--CCCCEEEEEECCCCEEEEecCc-------eEEEEeccCcccEEEEEEcC
Confidence 1111111 11 1234555554433 1467899999999988876221 12222222344444444433
Q ss_pred CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEE
Q 002290 735 NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFV 813 (941)
Q Consensus 735 ~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllv 813 (941)
+ ..++..+.+|.+..+.... |..+..+. ....|.++...++ ..++..
T Consensus 195 ~-~~~~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~----------------------~~l~~~ 242 (313)
T 3odt_A 195 D-GHFISCSNDGLIKLVDMHT---------GDVLRTYEGHESFVYCIKLLPN----------------------GDIVSC 242 (313)
T ss_dssp T-TEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEECTT----------------------SCEEEE
T ss_pred C-CeEEEccCCCeEEEEECCc---------hhhhhhhhcCCceEEEEEEecC----------------------CCEEEE
Confidence 3 3488888889877776532 22222232 2344555554432 358889
Q ss_pred ecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCc
Q 002290 814 SESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 814 Te~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~e 884 (941)
+.+|.++...+.... -+..+.. ....+.++.+. .+..++..+..|.+...++..
T Consensus 243 ~~dg~v~iwd~~~~~-------~~~~~~~-~~~~i~~~~~~---------~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 243 GEDRTVRIWSKENGS-------LKQVITL-PAISIWSVDCM---------SNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ETTSEEEEECTTTCC-------EEEEEEC-SSSCEEEEEEC---------TTSCEEEEETTSCEEEEESCG
T ss_pred ecCCEEEEEECCCCc-------eeEEEec-cCceEEEEEEc---------cCCCEEEEeCCCcEEEEeCCC
Confidence 999998888765422 1222322 22344444332 233477888888888777664
No 43
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=71.81 E-value=1.1e+02 Score=32.72 Aligned_cols=191 Identities=12% Similarity=0.144 Sum_probs=96.3
Q ss_pred cCCceEEEEc--cCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 580 PNDEMLLAIS--EKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 580 ~~e~~lv~lT--~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
|+..+++++| .+|.|+--...... ....++-+..+..+....+. .+++..+.+.+..+...
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~---------~~~~~~~~~~V~~v~fspdg-~~l~s~s~~~~~~~~~~------- 205 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLT---------EKFEIETRGEVKDLHFSTDG-KVVAYITGSSLEVISTV------- 205 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTE---------EEEEEECSSCCCEEEECTTS-SEEEEECSSCEEEEETT-------
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCc---------EEEEeCCCCceEEEEEccCC-ceEEeccceeEEEEEec-------
Confidence 5677777776 57888866554322 22233344455555444444 44444444544444321
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccc----eEEEeecccccccccCceEEEecCC-CCeEEEEEE
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNG----YIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRC 732 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~G----yiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~ 732 (941)
.|..+........+..|.++.... ++.+++..+.+| +++...+...... ......+.. ...+.++..
T Consensus 206 --~~~~~~~~~~~~~~~~v~~v~fsp---dg~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 206 --TGSCIARKTDFDKNWSLSKINFIA---DDTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp --TCCEEEEECCCCTTEEEEEEEEEE---TTEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEE
T ss_pred --cCcceeeeecCCCCCCEEEEEEcC---CCCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEE
Confidence 222222222223444555554332 566777777666 4444433221110 011112222 223443333
Q ss_pred ecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC--CCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcE
Q 002290 733 CTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD--GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWL 810 (941)
Q Consensus 733 ~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~--gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 810 (941)
..+...|+..+.+|.+....+.. |..+..+.. .+.|.++...|+ +..|
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~---------~~~~~~~~~gH~~~V~~v~fSpd---------------------g~~l 327 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKD---------LSMSKIFKQAHSFAITEVTISPD---------------------STYV 327 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT---------TEEEEEETTSSSSCEEEEEECTT---------------------SCEE
T ss_pred CCCCCceEEEcCCCEEEEEECCC---------CcEEEEecCcccCCEEEEEECCC---------------------CCEE
Confidence 34455666677888776665432 333333222 346777766654 4678
Q ss_pred EEEecCccEEEEeCC
Q 002290 811 LFVSESGHGKRVPLS 825 (941)
Q Consensus 811 llvTe~G~gKR~~ls 825 (941)
+.+|.+|.++...+.
T Consensus 328 aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 328 ASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEETTSEEEEEECC
T ss_pred EEEeCCCeEEEEEcC
Confidence 889999999998873
No 44
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=71.41 E-value=47 Score=36.76 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEE
Q 002290 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVIL 750 (941)
Q Consensus 672 ~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir 750 (941)
.+|--+++...+ ....+.++|+.||+--.+++. |...+.-+ .+|.+.....-+...-++.++.+|+++.
T Consensus 258 ~~DFPVamqvs~---kygviyviTK~G~ihlyDleT-------gt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 258 QNDFPVAMQISE---KHDVVFLITKYGYIHLYDLET-------GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 327 (365)
T ss_dssp TTCCEEEEEEET---TTTEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEE
T ss_pred cCCceEEEEecc---cCCEEEEEeCCcEEEEEEccc-------CcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEE
Confidence 378888887765 567899999999999988764 43333323 3555544444455678999999999999
Q ss_pred Eecccc
Q 002290 751 SSCDII 756 (941)
Q Consensus 751 ~~v~eI 756 (941)
+.+++-
T Consensus 328 v~v~~~ 333 (365)
T 2xzh_A 328 VCVEEE 333 (365)
T ss_dssp EEECTT
T ss_pred EEECcc
Confidence 988763
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=71.26 E-value=1.1e+02 Score=32.31 Aligned_cols=242 Identities=12% Similarity=0.067 Sum_probs=126.8
Q ss_pred CCCccccccCCc-eEEEEccCceEEEeCC----CccccccCCCCCccccccc-----------CCCceeEEEEeeCCceE
Q 002290 572 QLDDIDIIPNDE-MLLAISEKGYVKRMKP----NTFNLQNRGTIGKSVGKLR-----------VNDAMSDFIVCRAHDHV 635 (941)
Q Consensus 572 ~~~~~dlI~~e~-~lv~lT~~GyIKR~~~----~~f~~~~rg~~G~~~~~Lk-----------e~D~l~~~~~~~~~d~l 635 (941)
.+.....-++.+ ++++.+.+|.|+--.. ..-...- .-.....+. ..+.+..+....+.+.|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW---KLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE---EEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc---cccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 444555667888 9999999999987655 2211000 000001111 13355566555566677
Q ss_pred EEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCc
Q 002290 636 LYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTG 715 (941)
Q Consensus 636 l~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G 715 (941)
+..+.+|.+.... ..|..+.. +. .....|.++.... ++.+++..+.+|.++.-++..-...
T Consensus 124 ~~~~~dg~i~i~~----------~~~~~~~~-~~-~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~---- 184 (425)
T 1r5m_A 124 VTGVENGELRLWN----------KTGALLNV-LN-FHRAPIVSVKWNK---DGTHIISMDVENVTILWNVISGTVM---- 184 (425)
T ss_dssp EEEETTSCEEEEE----------TTSCEEEE-EC-CCCSCEEEEEECT---TSSEEEEEETTCCEEEEETTTTEEE----
T ss_pred EEEeCCCeEEEEe----------CCCCeeee-cc-CCCccEEEEEECC---CCCEEEEEecCCeEEEEECCCCcEE----
Confidence 7777888776554 11211111 11 1344566665433 5678999999999988776542211
Q ss_pred eEEEecCCCC--------------eEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEE
Q 002290 716 IIAIQLVPGD--------------ELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASM 780 (941)
Q Consensus 716 ~~~ikLk~gD--------------~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv 780 (941)
..+...... .+..+. ..++..++..+.+|.+..+....- .....+. ....|.++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~---------~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 185 -QHFELKETGGSSINAENHSGDGSLGVDVE-WVDDDKFVIPGPKGAIFVYQITEK---------TPTGKLIGHHGPISVL 253 (425)
T ss_dssp -EEECCC---------------CCCBSCCE-EEETTEEEEECGGGCEEEEETTCS---------SCSEEECCCSSCEEEE
T ss_pred -EEeeccccCccceeeccccCCcceeeEEE-EcCCCEEEEEcCCCeEEEEEcCCC---------ceeeeeccCCCceEEE
Confidence 111111110 022222 234567888888998887765431 1112221 23456555
Q ss_pred EEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccC
Q 002290 781 DIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAE 860 (941)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~ 860 (941)
...++ +..++..+.+|.++...+..-.. +..+. .....+.++.+.
T Consensus 254 ~~~~~---------------------~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~-~~~~~i~~~~~~------ 298 (425)
T 1r5m_A 254 EFNDT---------------------NKLLLSASDDGTLRIWHGGNGNS-------QNCFY-GHSQSIVSASWV------ 298 (425)
T ss_dssp EEETT---------------------TTEEEEEETTSCEEEECSSSBSC-------SEEEC-CCSSCEEEEEEE------
T ss_pred EECCC---------------------CCEEEEEcCCCEEEEEECCCCcc-------ceEec-CCCccEEEEEEC------
Confidence 55443 35788888899988887654221 11121 122344444332
Q ss_pred CCCCCceEEEEecCCeEEEEecCc
Q 002290 861 DGESDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 861 ~~~~~deIllvT~~G~~iR~~v~e 884 (941)
.+..++..+..|.+..+++..
T Consensus 299 ---~~~~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 299 ---GDDKVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp ---TTTEEEEEETTSEEEEEETTT
T ss_pred ---CCCEEEEEeCCCcEEEEECCC
Confidence 112666777777777777643
No 46
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=70.98 E-value=1.2e+02 Score=32.61 Aligned_cols=103 Identities=8% Similarity=-0.001 Sum_probs=51.9
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEc-cCCeEEEEEecccCCcCc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFS-DRGIVYSARAYKIPECTR 657 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT-~~G~v~~~~~~eIp~~~r 657 (941)
++..+++..+.+|.|+........ ....+.. +..+..+....+...+++.. ..|.++.+. +..
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d---~~~--- 243 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLA---------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID---RKT--- 243 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCC---------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE---TTT---
T ss_pred CCCEEEEEECCCCEEEEEECCCce---------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE---CCC---
Confidence 456778888889999987764321 1122222 33343443333344443443 367666554 321
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEe--------ccceEEEeecc
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLT--------MNGYIKKVSLN 706 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT--------~~GyiKR~~l~ 706 (941)
|.. ... +..+..+.++.... ++.++++.+ .+|.++..++.
T Consensus 244 ---~~~-~~~--~~~~~~~~~~~~~~---~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 244 ---KLE-IRK--TDKIGLPRGLLLSK---DGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp ---TEE-EEE--CCCCSEEEEEEECT---TSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred ---CcE-EEE--ecCCCCceEEEEcC---CCCEEEEEECCCCccccCCCeEEEEECC
Confidence 211 111 22233455444322 455666666 47788877764
No 47
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=68.37 E-value=69 Score=36.82 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEE
Q 002290 672 DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVIL 750 (941)
Q Consensus 672 ~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir 750 (941)
.+|--+++...+ ....+.++|+.||+--.+++. |...+.-+ ..|.+.....-+...-++.++.+|+++.
T Consensus 257 ~~DFPvamqvs~---kygviyviTK~G~i~lyDleT-------gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 257 QNDFPVAMQISE---KHDVVFLITKYGYIHLYDLET-------GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 326 (494)
T ss_dssp TTCCEEEEEEET---TTTEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEE
T ss_pred ccCceeEEEecc---cCCEEEEEecCceEEEEeccc-------ceeeeeecccCCceEEecccCCCCcEEEEccCceEEE
Confidence 378888887765 567899999999999988764 43333222 3555544444456778999999999999
Q ss_pred Eecccc
Q 002290 751 SSCDII 756 (941)
Q Consensus 751 ~~v~eI 756 (941)
+.+++-
T Consensus 327 v~v~e~ 332 (494)
T 1bpo_A 327 VCVEEE 332 (494)
T ss_dssp EEECTT
T ss_pred EEEccc
Confidence 998873
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=67.75 E-value=1.4e+02 Score=32.19 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=93.5
Q ss_pred CceeEEEEee-CCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccce
Q 002290 621 DAMSDFIVCR-AHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGY 699 (941)
Q Consensus 621 D~l~~~~~~~-~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~Gy 699 (941)
+.+..+.... +...|+..+.+|.+......... .|......+.+.-...|.++.... +..+++..+.+|.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~dg~ 134 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------VGEVYSSSLTYDCSSTVTQITMIP---NFDAFAVSSKDGQ 134 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------TTCCCSCSEEEECSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccc------cCcccceeeeccCCCCEEEEEEeC---CCCEEEEEeCCCE
Confidence 5566665555 55667767788877655543311 121111122223455677766543 5678999999999
Q ss_pred EEEeecccccc---cc--c-CceEEEecC---CCCeEEEEEEe--cCCCeEEEEecCCcEEEEecccccccCCCCCCeee
Q 002290 700 IKKVSLNLFSS---IR--T-TGIIAIQLV---PGDELKWVRCC--TNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA 768 (941)
Q Consensus 700 iKR~~l~~f~~---~~--r-~G~~~ikLk---~gD~Lv~v~~~--~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l 768 (941)
++.-.+..-.. .+ + ..+..+.+. .++.+..+... .+...++..+.+|.+....... |..+
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~ 205 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---------LERL 205 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---------CCEE
T ss_pred EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Ceee
Confidence 99877642101 00 0 023334443 34555555433 2345667778888877665432 2223
Q ss_pred eeCCC---CCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 769 MRLKD---GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 769 i~L~~---gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
..+.. ...|.++...++ +..++..+.+|.++...+..
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~---------------------~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEE---------------------CCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEECCGGGCCEEEEEECTT---------------------SCEEEEEETTSCEEEEETTT
T ss_pred EEEccCCCCCceEEEEECCC---------------------CCEEEEEcCCCeEEEEEcCC
Confidence 33322 345666655443 46788899999999887753
No 49
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=64.55 E-value=1.6e+02 Score=31.87 Aligned_cols=252 Identities=13% Similarity=0.145 Sum_probs=124.9
Q ss_pred CccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEeccc
Q 002290 574 DDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKI 652 (941)
Q Consensus 574 ~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eI 652 (941)
.....-|+..+++..+.+|.|+--....-. ....++. .+.+..+....+...|+..+.+|.+.-.. +
T Consensus 112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd---~ 179 (410)
T 1vyh_C 112 TRVIFHPVFSVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD---F 179 (410)
T ss_dssp EEEEECSSSSEEEEEESSSCEEEEETTTCC---------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE---T
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe---C
Confidence 333345678899999999999976653311 1122332 23455554445555666667777655433 3
Q ss_pred CCcCccccCcccccccccC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEE
Q 002290 653 PECTRNAAGTPLVQILSLS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWV 730 (941)
Q Consensus 653 p~~~r~a~G~pl~~~i~L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v 730 (941)
.. +..+. .+. ....|.++.... ++.+++..+.+|.++--++.. |.....+.. .+.+..+
T Consensus 180 ~~------~~~~~---~~~~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~-------~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 180 QG------FECIR---TMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQT-------GYCVKTFTGHREWVRMV 240 (410)
T ss_dssp TS------SCEEE---CCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEE
T ss_pred CC------CceeE---EEcCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCC-------CcEEEEEeCCCccEEEE
Confidence 22 11111 121 233455554432 567899999999999877643 222222322 2334444
Q ss_pred EEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCC-CeEEEEEEecccccccccCCCCCCCCCCCCCCCCc
Q 002290 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG-DKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPW 809 (941)
Q Consensus 731 ~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~g-D~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (941)
....+...++..+.+|.+....... |.....+... ..|.++...++.......... ..........+..
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPF 310 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCC---------CceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCE
Confidence 3334445566667778766655421 1112223222 234444443321100000000 0000001112457
Q ss_pred EEEEecCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecC
Q 002290 810 LLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVR 883 (941)
Q Consensus 810 lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~ 883 (941)
++..+.+|.++...+.. |.....+.. .+.+.++.+. .+...++..+..|.+...+..
T Consensus 311 l~sgs~D~~i~iwd~~~---------~~~~~~~~~h~~~v~~v~~~--------~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVST---------GMCLMTLVGHDNWVRGVLFH--------SGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEETTSEEEEEETTT---------TEEEEEEECCSSCEEEEEEC--------SSSSCEEEEETTTEEEEECCT
T ss_pred EEEEeCCCeEEEEECCC---------CceEEEEECCCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECC
Confidence 88889999998887642 222233332 2344443321 224567777788888777664
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=58.90 E-value=1.8e+02 Score=30.42 Aligned_cols=163 Identities=14% Similarity=0.009 Sum_probs=84.4
Q ss_pred CCCcccccc-CCceEEEEccCceEEEeCCCccccccCCCCCccc-----cccc-CCCceeEEEEee-CCceEEEEccCCe
Q 002290 572 QLDDIDIIP-NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV-----GKLR-VNDAMSDFIVCR-AHDHVLYFSDRGI 643 (941)
Q Consensus 572 ~~~~~dlI~-~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~-----~~Lk-e~D~l~~~~~~~-~~d~ll~fT~~G~ 643 (941)
.+.....-+ +..++++.+.+|.|+--....-.....- ..... .... -...+..+.... +...++..+.+|.
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 344444556 7889999999999997766543221100 00000 0000 233444444444 3445666666887
Q ss_pred EEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC
Q 002290 644 VYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP 723 (941)
Q Consensus 644 v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~ 723 (941)
+.... +.. |.+ ...+. ..+.+..+.......+..+++..+.+|.++...+..-.. + ..+..
T Consensus 124 i~iwd---~~~------~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~--~~~~~ 184 (408)
T 4a11_B 124 LKVWD---TNT------LQT-ADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-----S--HILQG 184 (408)
T ss_dssp EEEEE---TTT------TEE-EEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-----C--EEECC
T ss_pred EEEee---CCC------Ccc-ceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-----e--eeecC
Confidence 66554 332 111 11222 234455544433223456889999999999887754211 1 22322
Q ss_pred -CCeEEEEEEecCCCe-EEEEecCCcEEEEecc
Q 002290 724 -GDELKWVRCCTNDDL-VAMASQNGMVILSSCD 754 (941)
Q Consensus 724 -gD~Lv~v~~~~~~d~-Ill~T~~G~vir~~v~ 754 (941)
.+.+..+........ ++..+.+|.+..+...
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence 233444444444443 5567778887777653
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=58.09 E-value=2.1e+02 Score=31.01 Aligned_cols=235 Identities=13% Similarity=0.064 Sum_probs=121.5
Q ss_pred ccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcc
Q 002290 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658 (941)
Q Consensus 579 I~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~ 658 (941)
-.+..+++..+.+|.|+--...... ....+.....-+..........++..+.+|.+.... +..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~---------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd---~~~---- 192 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKK---------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD---IKK---- 192 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEE---TTT----
T ss_pred EECCCEEEEEcCCCcEEEEECCCCc---------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEE---CCC----
Confidence 3467799999999999977654322 222233222223333334444677777888766544 322
Q ss_pred ccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCc----e------------EEEecC
Q 002290 659 AAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTG----I------------IAIQLV 722 (941)
Q Consensus 659 a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G----~------------~~ikLk 722 (941)
|..+.. +. .....|.++.... ..+..+++..+.+|.++.-++..-......+ . ....+.
T Consensus 193 --~~~~~~-~~-~h~~~v~~l~~~~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 193 --GCCTHV-FE-GHNSTVRCLDIVE-YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp --TEEEEE-EC-CCSSCEEEEEEEE-SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred --CcEEEE-EC-CCCCccEEEEEec-CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 211111 11 1334555544332 2356789999999999987775432211000 0 011111
Q ss_pred C-CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEecccccccccCCCCCCCC
Q 002290 723 P-GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHS 800 (941)
Q Consensus 723 ~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~~~~~~~~~~~~~ 800 (941)
. ...+..+ ......++..+.+|.+...+... |..+..+. ..+.|.++...++
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~--------------- 321 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ---------MKCLYILSGHTDRIYSTIYDHE--------------- 321 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEEETT---------------
T ss_pred CccceEEEE--cCCCCEEEEEeCCCeEEEEECCC---------CcEEEEecCCCCCEEEEEEcCC---------------
Confidence 1 2223222 23356677778888877666532 22333332 2345666555443
Q ss_pred CCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEE
Q 002290 801 NVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880 (941)
Q Consensus 801 ~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~ 880 (941)
+..++..+.+|.++...+..- .....+......+..+.. .+..++..+..|.+...
T Consensus 322 ------~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~---------~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 322 ------RKRCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRL---------SDKFLVSAAADGSIRGW 377 (464)
T ss_dssp ------TTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEE---------CSSEEEEEETTSEEEEE
T ss_pred ------CCEEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEEEEE---------cCCEEEEEeCCCcEEEE
Confidence 357888899998888876531 122223322222222222 13456666667776666
Q ss_pred ecCc
Q 002290 881 KVRD 884 (941)
Q Consensus 881 ~v~e 884 (941)
++.+
T Consensus 378 d~~~ 381 (464)
T 3v7d_B 378 DAND 381 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6654
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=57.01 E-value=3.7e+02 Score=33.58 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=38.7
Q ss_pred CCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCCCeEEEEecCCcEEEEecc
Q 002290 687 GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTNDDLVAMASQNGMVILSSCD 754 (941)
Q Consensus 687 ~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~ 754 (941)
++..+++.+.+|.++.-++.. |.....+.. .+.+..+....+...++..+.+|.+......
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDS-------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTT-------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCEEEEEeCCCeEEEEEcCC-------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 567888899999888876653 222233332 3345555555556677777888887776654
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=56.87 E-value=1.9e+02 Score=30.29 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=111.2
Q ss_pred CCccccccCC-ceEEEEccCceEEEeCCCccccccCCCCCcccccc-cCCCceeEEEEee-CCceEEEEccCCeEEEEEe
Q 002290 573 LDDIDIIPND-EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKL-RVNDAMSDFIVCR-AHDHVLYFSDRGIVYSARA 649 (941)
Q Consensus 573 ~~~~dlI~~e-~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~L-ke~D~l~~~~~~~-~~d~ll~fT~~G~v~~~~~ 649 (941)
+.....-++. .+++..+.+|.|+--....-. ......+ .-.+.+..+.... +...++..+.+|.+....
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd- 147 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD- 147 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE-
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE-
Confidence 3334445666 799999999999977654321 1111222 1234455544444 335555566677765444
Q ss_pred cccCCcCccccCcccccccccC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeE
Q 002290 650 YKIPECTRNAAGTPLVQILSLS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDEL 727 (941)
Q Consensus 650 ~eIp~~~r~a~G~pl~~~i~L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~L 727 (941)
+.. ..+....... ....|.++.... ++.+++..+.+|.++-.+++ |.....+.. .+.+
T Consensus 148 --~~~-------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 148 --FSG-------SVIQVFAKTDSWDYWYCCVDVSV---SRQMLATGDSTGRLLLLGLD--------GHEIFKEKLHKAKV 207 (383)
T ss_dssp --TTS-------CEEEEEECCCCSSCCEEEEEEET---TTTEEEEEETTSEEEEEETT--------SCEEEEEECSSSCE
T ss_pred --CCC-------CceEEEeccCCCCCCeEEEEECC---CCCEEEEECCCCCEEEEECC--------CCEEEEeccCCCcE
Confidence 331 1111111111 124455554432 57789999999999988763 112223322 3345
Q ss_pred EEEEEecCCC-eEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEec-ccccccccCCCCCCCCCCCCC
Q 002290 728 KWVRCCTNDD-LVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIP-AALHKDLERTPEDSHSNVKGS 805 (941)
Q Consensus 728 v~v~~~~~~d-~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~-~~~~~~~~~~~~~~~~~~~~~ 805 (941)
..+....... .++..+.+|.+..+....... .+..+..+.-...|.++...+ +
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~-------------------- 262 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----KNSYIAEMPHEKPVNAAYFNPTD-------------------- 262 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----TTCEEEEEECSSCEEEEEECTTT--------------------
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----ccceEEEecCCCceEEEEEcCCC--------------------
Confidence 5454444444 566667788776666543221 122332333445666666554 3
Q ss_pred CCCcEEEEecCccEEEEeCCCccc
Q 002290 806 SGPWLLFVSESGHGKRVPLSSFRK 829 (941)
Q Consensus 806 ~~~~lllvTe~G~gKR~~lse~~~ 829 (941)
+..++..+.+|.++...+.....
T Consensus 263 -~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 263 -STKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp -SCEEEEEESSSEEEEEETTBTTS
T ss_pred -CCEEEEEcCCCcEEEEECCCCcc
Confidence 35788888899999888765443
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=56.82 E-value=2.9e+02 Score=32.35 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=106.3
Q ss_pred ccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecccC
Q 002290 575 DIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIP 653 (941)
Q Consensus 575 ~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp 653 (941)
....=|+.+++++.+.+|.|+--....- .....+.. ...+..+....+...|+..+.+|.+.... +.
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~---~~ 85 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ---------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN---YN 85 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE---TT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC---------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE---CC
Confidence 3344577889999999999887654331 12222332 23344555555666777788888776554 32
Q ss_pred CcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEE
Q 002290 654 ECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRC 732 (941)
Q Consensus 654 ~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~ 732 (941)
. |..+.. +. .....|..+.... ++++++..+.+|.++.-.+.. ++.....+. ....+..+..
T Consensus 86 ~------~~~~~~-~~-~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 86 T------GEKVVD-FE-AHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWEN------NWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp T------CCEEEE-EE-CCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGG------TSEEEEEEECCSSCEEEEEE
T ss_pred C------CcEEEE-Ee-cCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCC------CceEEEEEcCCCCcEEEEEE
Confidence 2 211111 11 1234566655433 567899999999998877643 112222222 2344554444
Q ss_pred ec-CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEE
Q 002290 733 CT-NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLL 811 (941)
Q Consensus 733 ~~-~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 811 (941)
.. +...++..+.+|.+.......- .....+.......+..+...+. ..+..++
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~ 202 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQS-------TPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMI 202 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCS-------SCSEEEECCCTTCCCEEEECCS-------------------TTCCEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-------cceeEEecCCCCCEEEEEEEEC-------------------CCCCEEE
Confidence 43 3446666777888776654321 1111122222233334433331 0146788
Q ss_pred EEecCccEEEEeCC
Q 002290 812 FVSESGHGKRVPLS 825 (941)
Q Consensus 812 lvTe~G~gKR~~ls 825 (941)
..+.+|.++...+.
T Consensus 203 ~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 203 TASDDLTIKIWDYQ 216 (814)
T ss_dssp EECTTSEEEEEETT
T ss_pred EEeCCCEEEEEECC
Confidence 88889988887764
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=54.09 E-value=2.1e+02 Score=29.82 Aligned_cols=212 Identities=9% Similarity=-0.006 Sum_probs=107.5
Q ss_pred CCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 573 ~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
+.....-++..+++..+.+|.|+--....-.. .....++. .+.+..+....+.+.|+..+.+|.+... +
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw---d 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY---E 83 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCce-------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE---E
Confidence 44444556788888888999888655432100 11122332 2344444444455667667778876544 3
Q ss_pred cCCcCccccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEE
Q 002290 652 IPECTRNAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWV 730 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v 730 (941)
+.... .......+ .....|..+.... ++.+++..+.+|.++.-.+..-... .-...+.-.-.+.+..+
T Consensus 84 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 84 KRPDG------TWKQTLVLLRLNRAATFVRWSP---NEDKFAVGSGARVISVCYFEQENDW--WVSKHLKRPLRSTILSL 152 (377)
T ss_dssp -----------CCCCEEECCCCSSCEEEEECCT---TSSCCEEEESSSCEEECCC-----C--CCCEEECSSCCSCEEEE
T ss_pred cCCCC------ceeeeeEecccCCceEEEEECC---CCCEEEEEecCCeEEEEEECCcccc--eeeeEeecccCCCeEEE
Confidence 33321 00111122 2334555554332 5678899999999887665432110 00112221123445555
Q ss_pred EEecCCCeEEEEecCCcEEEEecccccccCC---------CCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCC
Q 002290 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSR---------NTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSN 801 (941)
Q Consensus 731 ~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR---------~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~ 801 (941)
....+...++..+.+|.+..+....-....+ ...|..+..+.-...|.++...++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------- 216 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS---------------- 216 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT----------------
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC----------------
Confidence 4444556677778888887776532111111 012333334433445666655543
Q ss_pred CCCCCCCcEEEEecCccEEEEeCCC
Q 002290 802 VKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 802 ~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
+..++..+.+|.++...+..
T Consensus 217 -----~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 217 -----GNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp -----SSCEEEEETTTEEC-CEECS
T ss_pred -----CCEEEEEeCCCcEEEEECCC
Confidence 35788899999888776654
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=52.55 E-value=2.2e+02 Score=29.71 Aligned_cols=205 Identities=17% Similarity=0.124 Sum_probs=103.7
Q ss_pred ceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeC----C---ceEEEEccCCeEEEEEecccCC
Q 002290 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRA----H---DHVLYFSDRGIVYSARAYKIPE 654 (941)
Q Consensus 583 ~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~----~---d~ll~fT~~G~v~~~~~~eIp~ 654 (941)
++++..+.+|.|+--....-..... -.....+.. ...+..+....+ . ..|+..+.+|.++......-..
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENP---KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCG---GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred CeEEEEcCCCEEEEEECCCcccccC---CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 7899999999999776644321000 001122222 234444444444 4 5666677888877665443211
Q ss_pred cCccccCcccccccccCC----CCeEEEEEecccc-CCCcE-EEEEeccceEEEeecccc------cccccCceEEEec-
Q 002290 655 CTRNAAGTPLVQILSLSD----GERITSIIPVSEF-AGDQF-LVMLTMNGYIKKVSLNLF------SSIRTTGIIAIQL- 721 (941)
Q Consensus 655 ~~r~a~G~pl~~~i~L~~----~E~Iv~i~~v~~~-~~~~~-lllvT~~GyiKR~~l~~f------~~~~r~G~~~ikL- 721 (941)
..+ .+...+.... ...|.++...... +++.+ ++..+.+|.++.-++..+ ....-.-...+.-
T Consensus 104 ~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 104 TKK-----VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp TCC-----EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ccc-----ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 000 0011111111 3566666554100 25677 888899999998877652 1111000001211
Q ss_pred ----C-CCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-------CCeEEEEEEecccccc
Q 002290 722 ----V-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-------GDKMASMDIIPAALHK 789 (941)
Q Consensus 722 ----k-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-------gD~Ivsv~~~~~~~~~ 789 (941)
. ....+..+....+. .++..+.+|.+..+.... |..+..+.. ...|.++...++
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~h~~~~~~i~~i~~~~~---- 244 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST---------LRPLYNFESQHSMINNSNSIRSVKFSPQ---- 244 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT---------TEEEEEEECCC---CCCCCEEEEEECSS----
T ss_pred eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC---------CceeEEEeccccccccCCccceEEECCC----
Confidence 1 13334444333344 666667778877766532 223333333 455666655443
Q ss_pred cccCCCCCCCCCCCCCCCCcEEEEecC---ccEEEEeCCC
Q 002290 790 DLERTPEDSHSNVKGSSGPWLLFVSES---GHGKRVPLSS 826 (941)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~lllvTe~---G~gKR~~lse 826 (941)
+..++..+.+ |.++...+..
T Consensus 245 -----------------~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 245 -----------------GSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEEETTT
T ss_pred -----------------CCEEEEEecCCCCceEEEEECCC
Confidence 3567788888 8888877653
No 57
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=47.35 E-value=2.7e+02 Score=29.04 Aligned_cols=246 Identities=11% Similarity=0.092 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-Cc-----ccccccCCCCCCCccccccCCceEE
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFST-PR-----LSMLEDADSGQLDDIDIIPNDEMLL 586 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~-~R-----RT~I~~~~~~~~~~~dlI~~e~~lv 586 (941)
+|.+.|++|.+.|++++...++.+.+.. +......... +| +..+.. -...+.....-++..+++
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~g-H~~~v~~~~~s~d~~~l~ 71 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACADAT---------LSQITNNIDPVGRIQMRTRRTLRG-HLAKIYAMHWGTDSRLLL 71 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCC---------HHHHTTTSCCCCCCCCCEEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccch---------hHHhhcCCCccccccchhheeecC-CCCceEEEEECCCCCEEE
Confidence 3667788888888888888877766432 1111111111 11 111111 112333333457888999
Q ss_pred EEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccCcccc
Q 002290 587 AISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLV 665 (941)
Q Consensus 587 ~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~ 665 (941)
..+.+|.|+--....... ...+.. ...+..+....+...|+..+.+|.+.... +.... ... .+.
T Consensus 72 s~s~Dg~v~iWd~~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~---~~~~~--~~~-~~~ 136 (340)
T 1got_B 72 SASQDGKLIIWDSYTTNK---------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN---LKTRE--GNV-RVS 136 (340)
T ss_dssp EEETTTEEEEEETTTCCE---------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE---TTTCS--BSC-EEE
T ss_pred EEeCCCcEEEEECCCCCc---------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE---CccCC--Ccc-eeE
Confidence 999999999765433211 111221 22333444444555566666677655443 33211 000 001
Q ss_pred cccccC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCCCeEEEEe
Q 002290 666 QILSLS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTNDDLVAMAS 743 (941)
Q Consensus 666 ~~i~L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~Ill~T 743 (941)
. .+. ....|..+... ++..++..+.+|.++--++.. |.....+.. .+.+..+....+...++..+
T Consensus 137 ~--~~~~h~~~v~~~~~~----~~~~l~s~s~d~~i~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 137 R--ELAGHTGYLSCCRFL----DDNQIVTSSGDTTCALWDIET-------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp E--EEECCSSCEEEEEEE----ETTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred E--EecCCCccEEEEEEC----CCCcEEEEECCCcEEEEECCC-------CcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 1 111 22334444332 234588889999998876643 222233332 23344444444455566667
Q ss_pred cCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEE
Q 002290 744 QNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRV 822 (941)
Q Consensus 744 ~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~ 822 (941)
.+|.+....... |.....+.. ...|.++...|+ +..++..+.+|.++..
T Consensus 204 ~d~~v~~wd~~~---------~~~~~~~~~h~~~v~~v~~~p~---------------------~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 204 CDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPN---------------------GNAFATGSDDATCRLF 253 (340)
T ss_dssp TTSCEEEEETTT---------CSEEEEECCCSSCEEEEEECTT---------------------SSEEEEEETTSCEEEE
T ss_pred CCCcEEEEECCC---------CeeEEEEcCCcCCEEEEEEcCC---------------------CCEEEEEcCCCcEEEE
Confidence 788776665431 222223322 334666655543 3578888999999888
Q ss_pred eCCC
Q 002290 823 PLSS 826 (941)
Q Consensus 823 ~lse 826 (941)
.+..
T Consensus 254 d~~~ 257 (340)
T 1got_B 254 DLRA 257 (340)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7653
No 58
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=46.63 E-value=3.3e+02 Score=29.87 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=111.1
Q ss_pred eeCCceEEEEccCCeEEEEEecccCCcCcccc-CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccc
Q 002290 629 CRAHDHVLYFSDRGIVYSARAYKIPECTRNAA-GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNL 707 (941)
Q Consensus 629 ~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~-G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~ 707 (941)
+-+..+.+++|++|++|..-..+--..+.... -......+...++.+|+.+.+ ...+.+.+|++|.+----...
T Consensus 127 a~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~-----G~~hs~alt~~G~v~~wG~n~ 201 (406)
T 4d9s_A 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA-----GAEHTAAVTEDGDLYGWGWGR 201 (406)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE-----CSSEEEEEETTSCEEEEECCT
T ss_pred EEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec-----CCCeEEEEeCCCCEEEeeCCC
Confidence 34677889999999999886543211111000 011112233334667777765 346788899999777655444
Q ss_pred ccccccCc---e-EEEecC--CCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeee----eeCCCCCeE
Q 002290 708 FSSIRTTG---I-IAIQLV--PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA----MRLKDGDKM 777 (941)
Q Consensus 708 f~~~~r~G---~-~~ikLk--~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l----i~L~~gD~I 777 (941)
|-....+. . .-..+. .+..++.+ .-...+.+++|++|.++.+-..+--..|....-... +..-.+..|
T Consensus 202 ~GqlG~g~~~~~~~p~~v~~~~~~~i~~v--a~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v 279 (406)
T 4d9s_A 202 YGNLGLGDRTDRLVPERVTSTGGEKMSMV--ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 279 (406)
T ss_dssp TSTTCSSSSCCEEEEEECCCSTTCCEEEE--EECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCCCCCCCCcCccEEecccCCceEEEE--EECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCE
Confidence 43221110 0 111121 23444433 345678889999999998865544333322111111 111123445
Q ss_pred EEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCccee--E--EEEccCCCcEEEEEE
Q 002290 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL--I--GYKFSAEDRLAAVFV 853 (941)
Q Consensus 778 vsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv--~--~ikl~~~D~lv~~~~ 853 (941)
+.+..- ..+.+++|++|...-.=..++-..+.+..-- . .+.+..+..++.+.
T Consensus 280 ~~i~~G-----------------------~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va- 335 (406)
T 4d9s_A 280 SQISGG-----------------------WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVS- 335 (406)
T ss_dssp EEEEEC-----------------------SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEE-
T ss_pred EEEEec-----------------------CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEE-
Confidence 544332 2467888999877766555544433221110 1 11122233444332
Q ss_pred EeecccCCCCCCceEEEEecCCeEEEEec
Q 002290 854 VGFSLAEDGESDEQVVLVSQSGTVNRIKV 882 (941)
Q Consensus 854 v~~~l~~~~~~~deIllvT~~G~~iR~~v 882 (941)
. ...+.+++|++|.+.-.=-
T Consensus 336 ~---------G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 336 C---------GWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp E---------CSSEEEEEETTSCEEEEEC
T ss_pred e---------CCCeEEEEeCCCCEEEecC
Confidence 1 3567788999998885543
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=46.00 E-value=2.7e+02 Score=28.67 Aligned_cols=233 Identities=11% Similarity=0.007 Sum_probs=116.4
Q ss_pred ceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEE
Q 002290 622 AMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIK 701 (941)
Q Consensus 622 ~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiK 701 (941)
.+..+....+...|+..+.+|.++...... ... .. ...+. .....|.++.... ++.+++..+.+|.++
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~---~~~----~~-~~~~~-~h~~~v~~~~~~~---~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSG---NKW----VQ-VHELK-EHNGQVTGVDWAP---DSNRIVTCGTDRNAY 77 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEET---TEE----EE-EEEEE-CCSSCEEEEEEET---TTTEEEEEETTSCEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCC---CcE----Ee-eeeec-CCCCcccEEEEeC---CCCEEEEEcCCCeEE
Confidence 344444444555555566778776655322 100 01 11111 1234566655433 567889999999988
Q ss_pred EeecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCee---eeeCCCCCeE
Q 002290 702 KVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSV---AMRLKDGDKM 777 (941)
Q Consensus 702 R~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~---li~L~~gD~I 777 (941)
.-++..-. -...+.+. -...+..+....+...++..+.+|.+.......- .... .+...-...|
T Consensus 78 vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 78 VWTLKGRT-----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE-------NDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEETTE-----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT-------TTEEEEEEECTTCCSCE
T ss_pred EEECCCCe-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC-------CcceeeeeeecccCCCe
Confidence 87664321 01222322 2344555554555667777788888766544311 1111 1111123456
Q ss_pred EEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCC---------CcceeEEEEccC-CCc
Q 002290 778 ASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPL---------NRVGLIGYKFSA-EDR 847 (941)
Q Consensus 778 vsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R---------~~kGv~~ikl~~-~D~ 847 (941)
.++...++ +..++..+.+|.++...+.......+ ...|.....+.. ...
T Consensus 146 ~~~~~~~~---------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 146 LSLDWHPN---------------------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp EEEEECTT---------------------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred eEEEEcCC---------------------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 66655543 35788888899988887642211110 112223333432 234
Q ss_pred EEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCcccc---ccccCCceEEEEcCCCCeEE
Q 002290 848 LAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISI---QARYARGVILMRLELSGKIQ 907 (941)
Q Consensus 848 lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~---~gR~a~GV~lmkL~~~d~Vv 907 (941)
+.++.+. .+...++..+..|.+..+++..-.. ..-....+..+...+++.++
T Consensus 205 v~~~~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 205 VHGVCFS--------ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 259 (372)
T ss_dssp EEEEEEC--------SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred EEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEE
Confidence 4443332 1234677778888888777754221 11122345555554444433
No 60
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=44.66 E-value=2.8e+02 Score=28.58 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=89.2
Q ss_pred cccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeCCceEEEEccCCeEEEEEecccCC
Q 002290 576 IDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPE 654 (941)
Q Consensus 576 ~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~ 654 (941)
..+-++..+++..+.+|.|+--....- .....+... +.+..+........++-.+.+|.+... ++.
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw---d~~- 137 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATG---------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIK- 137 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE---ETT-
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCC---------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE---ECC-
Confidence 334577889999999999997665432 111222222 234344333444555555666765443 332
Q ss_pred cCccccCcccccccccCCCCeEEEEEecccc---CCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEE
Q 002290 655 CTRNAAGTPLVQILSLSDGERITSIIPVSEF---AGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWV 730 (941)
Q Consensus 655 ~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~---~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v 730 (941)
|..+.... ...+.|..+...... .+...++..+.+|.++.-++..+.. ...+.. .+.+..+
T Consensus 138 ------~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 138 ------GQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-------EADFIGHNSNINTL 202 (319)
T ss_dssp ------SCEEEEEC--CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-------EEEECCCCSCEEEE
T ss_pred ------CCeEEEEe--ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-------heeecCCCCcEEEE
Confidence 21111111 223445554433211 1344788899999999887765432 122222 2334444
Q ss_pred EEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecc
Q 002290 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPA 785 (941)
Q Consensus 731 ~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~ 785 (941)
....+...|+..+.+|.+...... .+..+..+...+.|.++...|+
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~v~~~~~sp~ 248 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLA---------AKKAMYTLSAQDEVFSLAFSPN 248 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETT---------TTEEEEEEECCSCEEEEEECSS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECC---------CCcEEEEecCCCcEEEEEEcCC
Confidence 434445556666777876665543 1233344444556766665543
No 61
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.94 E-value=19 Score=30.39 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 002290 515 RKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELK 554 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk 554 (941)
.+++.+.+......|.+|+.-|...+...+-+.++|..+.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777665555444444444443
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=41.61 E-value=3e+02 Score=28.01 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=113.4
Q ss_pred CCCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEec
Q 002290 572 QLDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650 (941)
Q Consensus 572 ~~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~ 650 (941)
.+.....-++..+++..+.+|.|+-...... .....++. .+.+..+....+...|+..+.+|.+....
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd-- 102 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD-- 102 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE--
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE--
Confidence 4444445678889999999999987655432 12223332 33454554445566677777888776554
Q ss_pred ccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEecc-----ceEEEeeccccccccc------CceEEE
Q 002290 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMN-----GYIKKVSLNLFSSIRT------TGIIAI 719 (941)
Q Consensus 651 eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~-----GyiKR~~l~~f~~~~r------~G~~~i 719 (941)
+.. |.. ...+ .....|.++.... ++.+++..+.+ |.+....+..-..... .....+
T Consensus 103 -~~~------~~~-~~~~--~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 103 -VSN------GQC-VATW--KSPVPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp -TTT------CCE-EEEE--ECSSCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred -CCC------CcE-EEEe--ecCCCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 322 211 1112 2344566655433 56788888888 8888877654322110 011222
Q ss_pred ecCC-CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEecccccccccCCCCC
Q 002290 720 QLVP-GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPED 797 (941)
Q Consensus 720 kLk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~~~~~~~~~~ 797 (941)
.... .+.+..+....+...++..+.+|.+..+.... .+.....+. ....|.++...++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~v~~~~~~~~------------ 229 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN--------NYEYVDSIDLHEKSISDMQFSPD------------ 229 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT--------TTEEEEEEECCSSCEEEEEECTT------------
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC--------CcEeEEEEecCCCceeEEEECCC------------
Confidence 2222 23455554445566777778889877776532 122222222 2344666555443
Q ss_pred CCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 798 ~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
+..++..+.+|.++...+..
T Consensus 230 ---------~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 230 ---------LTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp ---------SSEEEEEETTSEEEEEETTT
T ss_pred ---------CCEEEEecCCceEEEEECCC
Confidence 35788888899888887754
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=40.93 E-value=3e+02 Score=27.87 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=107.1
Q ss_pred cccccCCc-eEEEEccCceEEEeCC-CccccccCCCCCccccccc---CCCceeEEEEeeCCceEEEEccCCeEEEEEec
Q 002290 576 IDIIPNDE-MLLAISEKGYVKRMKP-NTFNLQNRGTIGKSVGKLR---VNDAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650 (941)
Q Consensus 576 ~dlI~~e~-~lv~lT~~GyIKR~~~-~~f~~~~rg~~G~~~~~Lk---e~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~ 650 (941)
...-++.. +++..+.+|.|+-... ..-.. ..+. -...+..+.... .+.++..+.+|.+......
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSE----------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCce----------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 33456788 8999999999998766 43211 1222 233444544444 6777777888877655433
Q ss_pred ccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccc-ccccccCceEEEecCCCCeEEE
Q 002290 651 KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNL-FSSIRTTGIIAIQLVPGDELKW 729 (941)
Q Consensus 651 eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~-f~~~~r~G~~~ikLk~gD~Lv~ 729 (941)
......-...+.++. .+.....|.++.... + .+++.+.+|.++...+.. .... ...........+..
T Consensus 131 ~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~----~-~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSN---NTKVKNKIFTMDTNS----S-RLIVGMNNSQVQWFRLPLCEDDN----GTIEESGLKYQIRD 198 (342)
T ss_dssp HHTTBCEEEEESCSS---SSSSCCCEEEEEECS----S-EEEEEESTTEEEEEESSCCTTCC----CEEEECSCSSCEEE
T ss_pred ccccccccccCCeee---EEeeCCceEEEEecC----C-cEEEEeCCCeEEEEECCcccccc----ceeeecCCCCceeE
Confidence 210000000022211 122445666665432 2 388899999999887765 3211 11122222333444
Q ss_pred EEEec-CCCeEEEEecCCcEEEEecccccccCCC--CCCeeeeeCCC--------CCeEEEEEEecccccccccCCCCCC
Q 002290 730 VRCCT-NDDLVAMASQNGMVILSSCDIIRSLSRN--TRGSVAMRLKD--------GDKMASMDIIPAALHKDLERTPEDS 798 (941)
Q Consensus 730 v~~~~-~~d~Ill~T~~G~vir~~v~eI~~~gR~--a~GV~li~L~~--------gD~Ivsv~~~~~~~~~~~~~~~~~~ 798 (941)
+.... +...++..+.+|.+...... ..+.. ..-...++... ...|.++...++
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------------- 262 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFD---DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------------- 262 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECC---TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT-------------
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEc---CCCcccccccceeeecccccccccccceeEEEEEEcCC-------------
Confidence 44444 45677777888876554332 11000 01112222211 125666554443
Q ss_pred CCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 799 HSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 799 ~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
+..++..+.+|.++...+..
T Consensus 263 --------~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 263 --------HKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp --------TCCEEEEETTSCEEEEETTT
T ss_pred --------CCEEEEecCCceEEEEcCcc
Confidence 46788899999988887753
No 64
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=39.42 E-value=42 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.++..|+++|..
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34689999999999999999999875
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.32 E-value=1.8e+02 Score=33.59 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKN 555 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~ 555 (941)
++++.+++++++++++.+++..+........-+++|+..++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 355566667767777777777776666666655555444433
No 66
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=37.54 E-value=3.7e+02 Score=27.85 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=117.0
Q ss_pred ccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 579 I~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
-++..+++..+.+|.|+--.+..-. ....+..+ ..+..+....+...|+..+..|.+..+. +....
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~---------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~---~~~~~- 155 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGK---------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG---VESGK- 155 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTE---------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE---TTTCS-
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCC---------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE---cCCCc-
Confidence 4556677888888888876553321 11112221 1222233334555666667778765444 32221
Q ss_pred cccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecC
Q 002290 658 NAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTN 735 (941)
Q Consensus 658 ~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~ 735 (941)
.. ..+ ..+..|.++... +++.+++..+.+|.++--++.. |.....+.. ...+..+....+
T Consensus 156 -----~~---~~~~~~~~~v~~~~~s---pdg~~lasg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~spd 217 (321)
T 3ow8_A 156 -----KE---YSLDTRGKFILSIAYS---PDGKYLASGAIDGIINIFDIAT-------GKLLHTLEGHAMPIRSLTFSPD 217 (321)
T ss_dssp -----EE---EEEECSSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCCCEEEECTT
T ss_pred -----ee---EEecCCCceEEEEEEC---CCCCEEEEEcCCCeEEEEECCC-------CcEEEEEcccCCceeEEEEcCC
Confidence 11 112 133455555433 3678899999999998877643 222223332 222333333334
Q ss_pred CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEe
Q 002290 736 DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVS 814 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvT 814 (941)
...++..+.+|.+....... |.....+. -...|.++...++ +..++..+
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~sp~---------------------~~~l~s~s 267 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQH---------ANLAGTLSGHASWVLNVAFCPD---------------------DTHFVSSS 267 (321)
T ss_dssp SCEEEEECTTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTT---------------------SSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCC---------cceeEEEcCCCCceEEEEECCC---------------------CCEEEEEe
Confidence 45566667777766655431 11222232 2234666655443 35788889
Q ss_pred cCccEEEEeCCCccccCCCcceeEEEEccC-CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEe
Q 002290 815 ESGHGKRVPLSSFRKLPLNRVGLIGYKFSA-EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881 (941)
Q Consensus 815 e~G~gKR~~lse~~~~~R~~kGv~~ikl~~-~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~ 881 (941)
.+|.++...+..- .....+.. .+.+.++.+. .+...|+..+..|.+...+
T Consensus 268 ~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s--------~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 268 SDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYN--------GNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTCCEEEEE
T ss_pred CCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEEC--------CCCCEEEEEeCCCeEEEEe
Confidence 9999988876532 12222322 3455444332 1234566777777766544
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=37.22 E-value=5.6e+02 Score=29.88 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=84.5
Q ss_pred eeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEE
Q 002290 623 MSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKK 702 (941)
Q Consensus 623 l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR 702 (941)
+..+....+...|+..+.+|.+.-.. +.. |..+. .+. .....|.++.... ++.++++.+.+|.++.
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd---~~~------~~~~~-~~~-~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWN---YET------QVEVR-SIQ-VTETPVRAGKFIA---RKNWIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEE---TTT------TEEEE-EEE-CCSSCEEEEEEEG---GGTEEEEEETTSEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEE---CCC------CceEE-EEe-cCCCcEEEEEEeC---CCCEEEEEeCCCeEEE
Confidence 44444444555566666677655443 322 21111 111 1234555555433 5678999999999988
Q ss_pred eecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEE
Q 002290 703 VSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASM 780 (941)
Q Consensus 703 ~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv 780 (941)
-.+.. |.....+. ..+.+..+....+...++..+.+|.+....... .+.....+. ....|.++
T Consensus 82 w~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 82 FNYNT-------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--------NWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG--------TSEEEEEEECCSSCEEEE
T ss_pred EECCC-------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC--------CceEEEEEcCCCCcEEEE
Confidence 77643 22222333 234455555555566777778888877665431 111112221 23456666
Q ss_pred EEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 781 DIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
...+.. +..++..+.+|.++...+..
T Consensus 147 ~~~p~~--------------------~~~l~~~~~dg~v~vwd~~~ 172 (814)
T 3mkq_A 147 AFNPKD--------------------PSTFASGCLDRTVKVWSLGQ 172 (814)
T ss_dssp EEETTE--------------------EEEEEEEETTSEEEEEETTC
T ss_pred EEEcCC--------------------CCEEEEEeCCCeEEEEECCC
Confidence 555411 24688888899888887643
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=36.67 E-value=4.8e+02 Score=28.96 Aligned_cols=199 Identities=11% Similarity=0.070 Sum_probs=102.6
Q ss_pred CCcccccc--CCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccC----CeEE
Q 002290 573 LDDIDIIP--NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDR----GIVY 645 (941)
Q Consensus 573 ~~~~dlI~--~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~----G~v~ 645 (941)
+.....-+ +..++++.+.+|.|+--....-..... ..+.....+.. ...+..+....+...++..+.. |.++
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~ 145 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 145 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc-ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEE
Confidence 33344556 788899999999988665531100000 00011112221 2233334333344444444433 3433
Q ss_pred EEEecccCCcCccccCcccccccccCCCCeEEEEEeccccCCCc-EEEEEeccceEEEeecccccccccCceEEEecCC-
Q 002290 646 SARAYKIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQ-FLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP- 723 (941)
Q Consensus 646 ~~~~~eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~-~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~- 723 (941)
..+. |.++.. +. .....|.++.... +++ .++..+.+|.++--++.... ....+..
T Consensus 146 ---~~d~--------~~~~~~-~~-~~~~~v~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~-------~~~~~~~~ 202 (615)
T 1pgu_A 146 ---SWDS--------GNSLGE-VS-GHSQRINACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFK-------FSASDRTH 202 (615)
T ss_dssp ---ETTT--------CCEEEE-CC-SCSSCEEEEEECS---SSSCEEEEEETTTEEEEEETTTBE-------EEEEECSS
T ss_pred ---EEEC--------CCccee-ee-cCCccEEEEEECC---CCCcEEEEEeCCCcEEEEeCCCcc-------eeeeeccc
Confidence 2331 111111 11 2344566655433 343 78889999999987765432 2223332
Q ss_pred CC---eEEEEEEecC-CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeC-----CCCCeEEEEEEecccccccccCC
Q 002290 724 GD---ELKWVRCCTN-DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRL-----KDGDKMASMDIIPAALHKDLERT 794 (941)
Q Consensus 724 gD---~Lv~v~~~~~-~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L-----~~gD~Ivsv~~~~~~~~~~~~~~ 794 (941)
.+ .+..+....+ ...++..+.+|.+..+.... |..+..+ .-...|.++... +
T Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~v~~~~~~-~--------- 263 (615)
T 1pgu_A 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGGIFALSWL-D--------- 263 (615)
T ss_dssp SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSCEEEEEES-S---------
T ss_pred CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC---------CCEeEEecccccccCCceEEEEEc-C---------
Confidence 22 4555554545 56677778889887776532 2233334 334456665544 3
Q ss_pred CCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 795 ~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
+..++..+.+|.++...+..
T Consensus 264 ------------~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 264 ------------SQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ------------SSEEEEEETTSEEEEEETTT
T ss_pred ------------CCEEEEEcCCCcEEEEECCC
Confidence 35788888899888887653
No 69
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=35.86 E-value=4e+02 Score=27.77 Aligned_cols=237 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred cCCceE-EEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccC-CeEEEEEecccCCcCc
Q 002290 580 PNDEML-LAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDR-GIVYSARAYKIPECTR 657 (941)
Q Consensus 580 ~~e~~l-v~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~-G~v~~~~~~eIp~~~r 657 (941)
++...+ +..+.+|.|+...+.. |.....+..+..+..+........|++.... |.++.+.
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d--------- 102 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTAT---------NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVID--------- 102 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTT---------TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEE---------
T ss_pred CCCCEEEEECCCCCeEEEEECCC---------CeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEE---------
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEE-EEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCC
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFL-VMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTND 736 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~l-llvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~ 736 (941)
...| .....+..+..+.++.... ++..+ +..+.+|.++..++.. |.....+..+..+..+....+.
T Consensus 103 ~~~~---~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~dg 169 (391)
T 1l0q_A 103 TTSN---TVAGTVKTGKSPLGLALSP---DGKKLYVTNNGDKTVSVINTVT-------KAVINTVSVGRSPKGIAVTPDG 169 (391)
T ss_dssp TTTT---EEEEEEECSSSEEEEEECT---TSSEEEEEETTTTEEEEEETTT-------TEEEEEEECCSSEEEEEECTTS
T ss_pred CCCC---eEEEEEeCCCCcceEEECC---CCCEEEEEeCCCCEEEEEECCC-------CcEEEEEecCCCcceEEECCCC
Q ss_pred CeE-EEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEe-
Q 002290 737 DLV-AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVS- 814 (941)
Q Consensus 737 d~I-ll~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvT- 814 (941)
..+ +..+.+|.+..+... .|.....+..+..+.++...++ +..+++.+
T Consensus 170 ~~l~~~~~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~~~~---------------------g~~l~~~~~ 219 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTV---------TNSVIDTVKVEAAPSGIAVNPE---------------------GTKAYVTNV 219 (391)
T ss_dssp SEEEEEETTTTEEEEEETT---------TTEEEEEEECSSEEEEEEECTT---------------------SSEEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECC---------CCeEEEEEecCCCccceEECCC---------------------CCEEEEEec
Q ss_pred --cCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEE-ecCCeEEEEecCcccccccc
Q 002290 815 --ESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLV-SQSGTVNRIKVRDISIQARY 891 (941)
Q Consensus 815 --e~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllv-T~~G~~iR~~v~eI~~~gR~ 891 (941)
.+|.++...+. .|.....+..+..+.++.+. .+...+++. +..|.+..+++..-.+...-
T Consensus 220 ~~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~s--------~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 220 DKYFNTVSMIDTG---------TNKITARIPVGPDPAGIAVT--------PDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp CSSCCEEEEEETT---------TTEEEEEEECCSSEEEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcCCCcEEEEECC---------CCeEEEEEecCCCccEEEEc--------cCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Q ss_pred CCc
Q 002290 892 ARG 894 (941)
Q Consensus 892 a~G 894 (941)
..|
T Consensus 283 ~~~ 285 (391)
T 1l0q_A 283 AVG 285 (391)
T ss_dssp ECS
T ss_pred ECC
No 70
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.56 E-value=55 Score=23.54 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.++..|+.+|..
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 35788999999999999999999875
No 71
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=35.08 E-value=52 Score=21.92 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 002290 515 RKKFVDESKTLMEQILKLEELLS 537 (941)
Q Consensus 515 ~~kL~~E~~~l~~ei~~l~~lL~ 537 (941)
.++|.+|+++|++.+..|+..|.
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888877654
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=34.63 E-value=3.8e+02 Score=27.20 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=62.8
Q ss_pred CceEEEEccCceEEEeCCCccccccCCCCCccccccc-CCCceeEEEEee-CCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 582 DEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR-VNDAMSDFIVCR-AHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 582 e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lk-e~D~l~~~~~~~-~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
..+++..+.+|.|+-....... ....+. -.+.+..+.... +...++..+.+|.+.... ++.
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd---~~~----- 147 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQ---------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN---IQT----- 147 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCC---------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE---TTT-----
T ss_pred CCEEEEecCCCEEEEEEchhce---------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE---eec-----
Confidence 4688999999999987664321 122333 234455554444 455666667788776554 332
Q ss_pred cCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccc
Q 002290 660 AGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLF 708 (941)
Q Consensus 660 ~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f 708 (941)
|+.+...-.+ .....|.++.... ++.+++..+.+|.++.-++...
T Consensus 148 -~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 148 -DTLVAIFGGVEGHRDEVLSADYDL---LGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp -TEEEEEECSTTSCSSCEEEEEECT---TSSEEEEEETTSCEEEEESCSH
T ss_pred -CeEEEEecccccccCceeEEEECC---CCCEEEEecCCCCEEEEECCCC
Confidence 2221221111 2345666665433 5678999999999999887643
No 73
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=34.14 E-value=5.4e+02 Score=28.77 Aligned_cols=226 Identities=10% Similarity=0.102 Sum_probs=114.2
Q ss_pred CCceeEEEEeeCCceEEEEccCCeEEEEEec-----ccCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEE
Q 002290 620 NDAMSDFIVCRAHDHVLYFSDRGIVYSARAY-----KIPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVML 694 (941)
Q Consensus 620 ~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~-----eIp~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllv 694 (941)
+..++.+. -+..+.+++|++|.+|..-.. ++-.......-.+....+....+.+|+.+.+ .....+++
T Consensus 147 ~~~i~~va--~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~-----G~~hs~al 219 (473)
T 3of7_A 147 GHKVVQLA--ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP-----GKDHILFL 219 (473)
T ss_dssp TCCEEEEE--ECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE-----CSSEEEEE
T ss_pred CCcEEEEE--ccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe-----cCCeEEEE
Confidence 44555443 466778889999999987642 1110000000011112233234667888775 34678899
Q ss_pred eccceEEEeecccccccccCc--------eEEEecCCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCC--
Q 002290 695 TMNGYIKKVSLNLFSSIRTTG--------IIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTR-- 764 (941)
Q Consensus 695 T~~GyiKR~~l~~f~~~~r~G--------~~~ikLk~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~-- 764 (941)
|++|.+.---...+-....+. ..-..+. ...++.+ +....+.+++|++|.++..-..+--..|....
T Consensus 220 t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~-~~~v~~I--a~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~ 296 (473)
T 3of7_A 220 DEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVKYI--ASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVE 296 (473)
T ss_dssp ETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS-CCSEEEE--EECSSEEEEEETTSCEEEEEECTTSTTCCCSCCC
T ss_pred eCCCeEEEEeCCCCCCCCCCccccccccccCceecC-CcceEEE--ecCCCeEEEEecCCCEEEeCCCCCCCcCCCCccc
Confidence 999987766555443221110 0000111 1233332 44677889999999999876554332222111
Q ss_pred -Cee-----eeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcc---
Q 002290 765 -GSV-----AMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRV--- 835 (941)
Q Consensus 765 -GV~-----li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~k--- 835 (941)
+.. .+..-.+..|+.+..- ..+-+++|++|.+.-.=..++-..+.+..
T Consensus 297 ~~~~~~~P~~v~~~~~~~i~~ia~G-----------------------~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~ 353 (473)
T 3of7_A 297 DGALVTKPKRLALPDNVVIRSIAAG-----------------------EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLP 353 (473)
T ss_dssp TTCEEEEEEECCCCTTCCEEEEEEC-----------------------SSEEEEEETTSCEEEEEECTTCTTCCCGGGCC
T ss_pred CCceeeccccccccCCccEEEEEeC-----------------------CCeEEEEeCCCeEEEEECCCCCccCCCccccc
Confidence 000 0122234455555432 24677788888776665554433332110
Q ss_pred --------ee-----EEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCccccc
Q 002290 836 --------GL-----IGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQ 888 (941)
Q Consensus 836 --------Gv-----~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI~~~ 888 (941)
|. .-.++..-..++.+. + .....+++|++|.+.-.=-++--..
T Consensus 354 ~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia-~---------G~~hs~al~~~G~vy~wG~n~~GqL 409 (473)
T 3of7_A 354 EYTYKDVHGKARAVPLPTKLNNVPKFKSVA-A---------GSHHSVAVAQNGIAYSWGFGETYAV 409 (473)
T ss_dssp TTCEECTTSCEEEEEEEEECCSSCCEEEEE-E---------CSSEEEEEETTSCEEEEECCTTCTT
T ss_pred cccccccCCceeeeccCcccCCCCceEEEE-e---------CCCeEEEEeCCCcEEEeeCCCCCCC
Confidence 10 111111111333332 1 3567788899999887765554333
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=34.13 E-value=4e+02 Score=27.24 Aligned_cols=204 Identities=11% Similarity=0.013 Sum_probs=106.0
Q ss_pred ccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeC--CceEEEEccCCeEEEEEecccC
Q 002290 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRA--HDHVLYFSDRGIVYSARAYKIP 653 (941)
Q Consensus 577 dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~--~d~ll~fT~~G~v~~~~~~eIp 653 (941)
..-++..+++..+.+|.|+--....- .+.....++.. +.+..+....+ ...|+..+.+|.+.......
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-- 88 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGE-------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-- 88 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETT-------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET--
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCC-------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC--
Confidence 34467888999999999886654310 11122233332 33444443333 56666777788776555432
Q ss_pred CcCccccCcccccccccC-CCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEE
Q 002290 654 ECTRNAAGTPLVQILSLS-DGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVR 731 (941)
Q Consensus 654 ~~~r~a~G~pl~~~i~L~-~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~ 731 (941)
... .....+. ....|.++..... ....++++.+.+|.++.-.+..-.. .....+. ....+..+.
T Consensus 89 -~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 89 -GRW-------SQIAVHAVHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp -TEE-------EEEEEECCCSSCEEEEEECCG-GGCSEEEEEETTSEEEEEECCTTSC-----CCEEEEECCTTCEEEEE
T ss_pred -Cce-------eEeeeecCCCcceEEEEeCCC-CCCCEEEEecCCCcEEEEecCCCCc-----eeeEEecCCCCceEEEE
Confidence 110 0111121 3345665544321 1167899999999999887754321 1122222 223344333
Q ss_pred Eec-------------CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCC
Q 002290 732 CCT-------------NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPED 797 (941)
Q Consensus 732 ~~~-------------~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~ 797 (941)
... +...++..+.+|.+..+....- . ........+.. ...|.++...++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~-~~~~~~~~~~~h~~~v~~~~~sp~~----------- 218 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----A-QTYVLESTLEGHSDWVRDVAWSPTV----------- 218 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETT----T-TEEEEEEEECCCSSCEEEEEECCCC-----------
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----C-cceeeEEEEecccCcEeEEEECCCC-----------
Confidence 333 3566777788888766654311 0 01112223332 3445555554431
Q ss_pred CCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 798 SHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 798 ~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
.....++..+.+|.++...+..
T Consensus 219 -------~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 219 -------LLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -------SSSEEEEEEETTSCEEEEEESS
T ss_pred -------CCCCeEEEEeCCCEEEEEeCCC
Confidence 0024678888899888877654
No 75
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=34.04 E-value=2.8e+02 Score=26.57 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHH
Q 002290 516 KKFVDESKTLMEQILKLEELLSSRKNIL-QLIEQEVIELKN 555 (941)
Q Consensus 516 ~kL~~E~~~l~~ei~~l~~lL~~~~~~~-~~i~~EL~elk~ 555 (941)
+.+.++++.+.++++.+++.++....+| ++|.+||..+-+
T Consensus 57 ~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vce 97 (141)
T 3okq_A 57 ETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCE 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 3455677777777777777777765555 688888887754
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=32.57 E-value=1.5e+02 Score=39.09 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEEE
Q 002290 673 GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILS 751 (941)
Q Consensus 673 ~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~ 751 (941)
+|--+++...+ ....+.++|+.||+--.++.. |.....-+ .+|.+.....-++..-++.++.+|+|+.+
T Consensus 258 ~Dfpv~~~vs~---k~g~iy~itk~G~~~~~d~~t-------~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 258 NDFPVAMQISE---KHDVVFLITKYGYIHLYDLET-------GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred cCcceEEEecc---ccCEEEEEecCceEEEEeccc-------chhhhhccccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 67777777654 567899999999999887764 22212111 24444333333345678899999999999
Q ss_pred eccccc
Q 002290 752 SCDIIR 757 (941)
Q Consensus 752 ~v~eI~ 757 (941)
.+++-.
T Consensus 328 ~v~~~~ 333 (1630)
T 1xi4_A 328 CVEEEN 333 (1630)
T ss_pred EEccch
Confidence 988743
No 77
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=32.35 E-value=66 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
.+++|..+.++|+.+...|+.+|..
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=31.92 E-value=7e+02 Score=29.44 Aligned_cols=224 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCccccccc-CCCceeEEEEeeC--CceEEEEccCCeEEEEEecccCCcC
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLR-VNDAMSDFIVCRA--HDHVLYFSDRGIVYSARAYKIPECT 656 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lk-e~D~l~~~~~~~~--~d~ll~fT~~G~v~~~~~~eIp~~~ 656 (941)
++.+++++.+.+|.|+--.... +.+.....+. -.+.+..+....+ .+.|+..+.+|.++......
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~-------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~----- 86 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEG-------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN----- 86 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET-----
T ss_pred CCCCeEEEEECCCcEEEEecCC-------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC-----
Q ss_pred ccccCcccccccccCCCCeEEEEEeccccCC--CcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEec
Q 002290 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAG--DQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCT 734 (941)
Q Consensus 657 r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~--~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~ 734 (941)
|.......-......|.++.... + +..+++.+.+|.++--++..-... .........+.+..+....
T Consensus 87 ----~~~~~~~~~~~h~~~V~~v~~sp---~~~~~~l~sgs~dg~I~vwdl~~~~~~----~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 87 ----GRWSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENGTT----SPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp ----TEEEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCSSSCC----CCEEEECCSSCEEEEEECC
T ss_pred ----CcccccccccCCCCCeEEEEECC---CCCCCEEEEEeCCCcEEEEEeecCCCc----ceeEeecCCCceEEEEecC
Q ss_pred -------------CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecc---cccccccCCCCC
Q 002290 735 -------------NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPA---ALHKDLERTPED 797 (941)
Q Consensus 735 -------------~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~---~~~~~~~~~~~~ 797 (941)
+...++..+.+|.+..+... .....+.....+.. ...|.++...++ +
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~-----~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~----------- 219 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN-----SDAQTYVLESTLEGHSDWVRDVAWSPTVLLR----------- 219 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEE-----TTTTEEEEEEEECCCSSCEEEEEECCCCSSS-----------
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEecc-----CCcccceeeeeecCCCCcEEEEEeccCCCCC-----------
Q ss_pred CCCCCCCCCCCcEEEEecCccEEEEeCC--------CccccCCCcceeEEEEccCCCcEEEEE
Q 002290 798 SHSNVKGSSGPWLLFVSESGHGKRVPLS--------SFRKLPLNRVGLIGYKFSAEDRLAAVF 852 (941)
Q Consensus 798 ~~~~~~~~~~~~lllvTe~G~gKR~~ls--------e~~~~~R~~kGv~~ikl~~~D~lv~~~ 852 (941)
..++..+.+|.++...+. ...........+.++.+..++..+++.
T Consensus 220 ----------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 220 ----------SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp ----------EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred ----------CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=31.81 E-value=4.5e+02 Score=27.16 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=62.7
Q ss_pred CCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecCCCeEEEEecCCcEEEE
Q 002290 673 GERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLVAMASQNGMVILS 751 (941)
Q Consensus 673 ~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~Ill~T~~G~vir~ 751 (941)
...|.++.... ++.+++..+.+|.++.-++..-.. -.....+. -.+.+..+....+...++..+.+|.+...
T Consensus 55 ~~~v~~~~~s~---~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 55 DKIVTCVDWAP---KSNRIVTCSQDRNAYVYEKRPDGT----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp SSCEEEEEECT---TTCCEEEEETTSSEEEC------C----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred CceEEEEEEeC---CCCEEEEEeCCCeEEEEEcCCCCc----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 34566655433 567899999999988876654220 00122332 23344444444455667777888876655
Q ss_pred ecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCC
Q 002290 752 SCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLS 825 (941)
Q Consensus 752 ~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~ls 825 (941)
....-.. . .-.+.+.-.-...|.++...++ +..++..+.+|.++...+.
T Consensus 128 d~~~~~~---~-~~~~~~~~~h~~~v~~~~~~~~---------------------~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 128 YFEQEND---W-WVSKHLKRPLRSTILSLDWHPN---------------------NVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp CC--------C-CCCEEECSSCCSCEEEEEECTT---------------------SSEEEEEESSSCEEEEEEC
T ss_pred EECCccc---c-eeeeEeecccCCCeEEEEEcCC---------------------CCEEEEEeCCCEEEEEEEE
Confidence 4332110 0 0011111112445666655543 3578888899998888774
No 80
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=30.95 E-value=69 Score=23.23 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..++.|..+..+|+.++..|+.+|..
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 34688999999999999999999874
No 81
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.88 E-value=68 Score=23.08 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.+...|+.+|..
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 34688999999999999999999864
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.60 E-value=85 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRK 540 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~ 540 (941)
+.+.|..+++.|+++|+.|+..|++|+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 578889999999999999999997654
No 83
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.06 E-value=72 Score=23.09 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.+...|+.+|..
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 34688999999999999999999864
No 84
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.91 E-value=1.4e+02 Score=22.37 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 002290 516 KKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRF 557 (941)
Q Consensus 516 ~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kf 557 (941)
..|++|...|+.+-+.|+..=-....+..++.+|+..++++.
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 345556666666655555443345567788999999888874
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=29.88 E-value=5.5e+02 Score=27.55 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=99.4
Q ss_pred ceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEe--eCCceEEEEccCCeEEEEEecccCCcCcc-
Q 002290 583 EMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVC--RAHDHVLYFSDRGIVYSARAYKIPECTRN- 658 (941)
Q Consensus 583 ~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~--~~~d~ll~fT~~G~v~~~~~~eIp~~~r~- 658 (941)
..++..+.+|.|+--....- .....++. .+.+..+... .+...++..+.+|.+.......-......
T Consensus 174 ~~l~s~s~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKKG---------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred CEEEEEeCCCCEEEEECCCC---------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 37777778888776654321 11222332 2334333333 24456677777887765554321111000
Q ss_pred -ccCccccc--------ccc-c-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCe
Q 002290 659 -AAGTPLVQ--------ILS-L-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDE 726 (941)
Q Consensus 659 -a~G~pl~~--------~i~-L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~ 726 (941)
....+... .+. + .....+..+. .++.+++..+.+|.++--++... .....+.. .+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~ 312 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-----GHGNIVVSGSYDNTLIVWDVAQM-------KCLYILSGHTDR 312 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEE-----EETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSC
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEc-----CCCCEEEEEeCCCeEEEEECCCC-------cEEEEecCCCCC
Confidence 00000000 000 1 1223344432 14678999999999998877532 22233332 344
Q ss_pred EEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCCC-CeEEEEEEecccccccccCCCCCCCCCCCCC
Q 002290 727 LKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDG-DKMASMDIIPAALHKDLERTPEDSHSNVKGS 805 (941)
Q Consensus 727 Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~g-D~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (941)
+..+....+...++..+.+|.+..+.... |..+..+... ..|.++. ..
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~-~~--------------------- 361 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLEN---------GELMYTLQGHTALVGLLR-LS--------------------- 361 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEE-EC---------------------
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CcEEEEEeCCCCcEEEEE-Ec---------------------
Confidence 55555555567788888888877765432 3334344332 2333332 21
Q ss_pred CCCcEEEEecCccEEEEeCCC
Q 002290 806 SGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 806 ~~~~lllvTe~G~gKR~~lse 826 (941)
+..++..+.+|.++...+..
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTT
T ss_pred -CCEEEEEeCCCcEEEEECCC
Confidence 25788889999999888765
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=29.82 E-value=5.5e+02 Score=27.52 Aligned_cols=222 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
.+.++++..+.+|.|+--.... |.....++....-+.....+ .+.++..+.+|.+.......-... +.-
T Consensus 127 ~~g~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~ 195 (445)
T 2ovr_B 127 FCGNRIVSGSDDNTLKVWSAVT---------GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECI-HTL 195 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTT---------CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEE-EEE
T ss_pred EcCCEEEEEECCCcEEEEECCC---------CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEE-EEE
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCCeE
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLV 739 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d~I 739 (941)
.| ....|.++.. .+..++..+.+|.++.-++.. |.....+.....-+..... +...+
T Consensus 196 ~~----------h~~~v~~~~~-----~~~~l~s~s~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~-~~~~l 252 (445)
T 2ovr_B 196 YG----------HTSTVRCMHL-----HEKRVVSGSRDATLRVWDIET-------GQCLHVLMGHVAAVRCVQY-DGRRV 252 (445)
T ss_dssp CC----------CSSCEEEEEE-----ETTEEEEEETTSEEEEEESSS-------CCEEEEEECCSSCEEEEEE-CSSCE
T ss_pred CC----------CCCcEEEEEe-----cCCEEEEEeCCCEEEEEECCC-------CcEEEEEcCCcccEEEEEE-CCCEE
Q ss_pred EEEecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccE
Q 002290 740 AMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHG 819 (941)
Q Consensus 740 ll~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~g 819 (941)
+..+.+|.+..+.... |..+..+.....-+....... ..++..+.+|.+
T Consensus 253 ~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~----------------------~~l~~~~~d~~i 301 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPET---------ETCLHTLQGHTNRVYSLQFDG----------------------IHVVSGSLDTSI 301 (445)
T ss_dssp EEEETTSCEEEEEGGG---------TEEEEEECCCSSCEEEEEECS----------------------SEEEEEETTSCE
T ss_pred EEEcCCCEEEEEECCC---------CcEeEEecCCCCceEEEEECC----------------------CEEEEEeCCCeE
Q ss_pred EEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCc
Q 002290 820 KRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 820 KR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~e 884 (941)
+...+.. |.....+......+..+.. .+..++..+..|.+..+++..
T Consensus 302 ~i~d~~~---------~~~~~~~~~~~~~v~~~~~---------~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 302 RVWDVET---------GNCIHTLTGHQSLTSGMEL---------KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp EEEETTT---------CCEEEEECCCCSCEEEEEE---------ETTEEEEEETTSCEEEEETTT
T ss_pred EEEECCC---------CCEEEEEcCCcccEEEEEE---------eCCEEEEEeCCCeEEEEECCC
No 87
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.74 E-value=5.6e+02 Score=27.66 Aligned_cols=272 Identities=12% Similarity=0.097 Sum_probs=139.6
Q ss_pred ccCCceEEEEccCceEEEeCCCccccccCCCCCc----ccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCC
Q 002290 579 IPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGK----SVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPE 654 (941)
Q Consensus 579 I~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~----~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~ 654 (941)
..-....+++|.+|-+--.=...+-..-.+.... ..+..-.+..+..+..+.+.++.+++|++|++|..-..+--.
T Consensus 59 ~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~Gq 138 (389)
T 3kci_A 59 IGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK 138 (389)
T ss_dssp EEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGT
T ss_pred EeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCc
Confidence 3456677888999987765443332111000000 000111122233344556788999999999999886543211
Q ss_pred cCcccc-CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCc---e---EEEecCCCCeE
Q 002290 655 CTRNAA-GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTG---I---IAIQLVPGDEL 727 (941)
Q Consensus 655 ~~r~a~-G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G---~---~~ikLk~gD~L 727 (941)
.+.... -......+...++.+|+.+.+ ...+.+.+|++|.+----...+-....+. . ..+..-.+..+
T Consensus 139 LG~g~~~~~~~p~~v~~l~~~~i~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 139 LGHGNRSPCDRPRVIESLRGIEVVDVAA-----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp TCSSSCCCEEEEEECGGGTTSCEEEEEE-----CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCCCccCcCCeEecccCCCeEEEEEe-----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 111000 001112233335667887765 34578889999977665555443221110 0 11111234455
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeee----eeCCCCCeEEEEEEecccccccccCCCCCCCCCCC
Q 002290 728 KWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVA----MRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVK 803 (941)
Q Consensus 728 v~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~l----i~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~ 803 (941)
+.+.....+...+++|++|.++.+-..+--..|....-... +..-.+..|+.+..-
T Consensus 214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-------------------- 273 (389)
T 3kci_A 214 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG-------------------- 273 (389)
T ss_dssp EEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--------------------
T ss_pred EEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--------------------
Confidence 55543334678899999999998876654444432211111 111133455555432
Q ss_pred CCCCCcEEEEecCccEEEEeCCCccccCCCccee--EEEEcc--CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEE
Q 002290 804 GSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL--IGYKFS--AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNR 879 (941)
Q Consensus 804 ~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv--~~ikl~--~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR 879 (941)
..+.+.+|++|.+.-.=..++-..+.+..-. .-.++. .+..++.+. . ...+.+++|++|.+.-
T Consensus 274 ---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia-~---------G~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 274 ---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA-T---------GSLHCVCCTEDGEVYT 340 (389)
T ss_dssp ---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE-E---------CSSEEEEEETTCCEEE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE-e---------ccCeEEEECCCCCEEE
Confidence 2467788888887766665554443321110 111111 223444332 1 3567788899999887
Q ss_pred EecCccccc
Q 002290 880 IKVRDISIQ 888 (941)
Q Consensus 880 ~~v~eI~~~ 888 (941)
.--++.-..
T Consensus 341 wG~n~~GqL 349 (389)
T 3kci_A 341 WGDNDEGQL 349 (389)
T ss_dssp EECCTTSTT
T ss_pred eeCCCCCcC
Confidence 665554333
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.56 E-value=86 Score=30.47 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
.+..|+.|+..++.+|..++..|.-..+..+.+.+|+..+.-+|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999998877664
No 89
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.10 E-value=2.4e+02 Score=26.61 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=22.5
Q ss_pred HhCCCHHHHHHHHhccHH-HhhHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 002290 491 EFKLSEKQADAILDMNLR-RLTML-ERKKFVDESKTLMEQILKLEELLS 537 (941)
Q Consensus 491 ~f~~s~~qaeaIL~M~L~-rLT~l-e~~kL~~E~~~l~~ei~~l~~lL~ 537 (941)
..|++-.++..+|++.-. .-+.. -..-|.+..++++++|++|+.++.
T Consensus 57 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~ 105 (142)
T 3gp4_A 57 RAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALD 105 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467887777777764211 00111 123344444555555555554443
No 90
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.73 E-value=60 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002290 514 ERKKFVDESKTLMEQILKLE 533 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~ 533 (941)
|+..|.+|+..|+++|..|+
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665554
No 91
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.97 E-value=6.1e+02 Score=29.11 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc-CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCcc
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~-~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI 885 (941)
.+-++++|+.||..-..+.. |...+.-. ..|.+..+..- +...-++.++.+|+++.+.+++-
T Consensus 270 ygviyviTK~G~i~lyDleT---------gt~i~~nrIs~~~iF~t~~~--------~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 270 HDVVFLITKYGYIHLYDLET---------GTCIYMNRISGETIFVTAPH--------EATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TTEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEE--------TTTTEEEEEETTCEEEEEEECTT
T ss_pred CCEEEEEecCceEEEEeccc---------ceeeeeecccCCceEEeccc--------CCCCcEEEEccCceEEEEEEccc
Confidence 36799999999999888764 22222211 34554322221 23456999999999999999874
Q ss_pred c
Q 002290 886 S 886 (941)
Q Consensus 886 ~ 886 (941)
.
T Consensus 333 ~ 333 (494)
T 1bpo_A 333 N 333 (494)
T ss_dssp T
T ss_pred c
Confidence 4
No 92
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=27.91 E-value=5.4e+02 Score=26.89 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=34.9
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccc--cccCC-------CceeEEEEeeCCceEEEEccCCeEEEEEec
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVG--KLRVN-------DAMSDFIVCRAHDHVLYFSDRGIVYSARAY 650 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~--~Lke~-------D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~ 650 (941)
..+..+++.+.+|.+....... |...= .+... +.......+-..+.|++.|.+|.++.+...
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~t---------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~ 121 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADD---------GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTS 121 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTT---------CCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EECCEEEEEcCCCeEEEEEccC---------CceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECC
Confidence 3456677778888888776532 11110 11110 112223334456788888888999888753
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=27.69 E-value=5.6e+02 Score=26.97 Aligned_cols=203 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred c-CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcc
Q 002290 580 P-NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658 (941)
Q Consensus 580 ~-~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~ 658 (941)
+ +..+++..+.+|.|+--....-........-.....-..+....-.+...+...++..+.+|.+.... .
T Consensus 91 p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd---------~ 161 (402)
T 2aq5_A 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD---------V 161 (402)
T ss_dssp TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE---------T
T ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE---------C
Q ss_pred ccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEE-ecCCCCeEEEEEEecCCC
Q 002290 659 AAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAI-QLVPGDELKWVRCCTNDD 737 (941)
Q Consensus 659 a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~i-kLk~gD~Lv~v~~~~~~d 737 (941)
..|.++..+........|.++.... ++.+++..+.+|.++.-++..-.. +..+ ....+..+..+....+..
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSR---DGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCSSSCCEEEECSTTE
T ss_pred CCCCccEEEecCCCCCceEEEEECC---CCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCCCcceEEEEcCCCc
Q ss_pred eEEEE---ecCCcEEEEecccccccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEe
Q 002290 738 LVAMA---SQNGMVILSSCDIIRSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVS 814 (941)
Q Consensus 738 ~Ill~---T~~G~vir~~v~eI~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvT 814 (941)
.++.. +.+|.+..+....... -.....+.....+.++...++ +..++++.
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~---------------------~~~l~~~g 286 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEE------PLSLQELDTSSGVLLPFFDPD---------------------TNIVYLCG 286 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSS------CSEEEECCCCSSCEEEEEETT---------------------TTEEEEEE
T ss_pred EEEEeccCCCCceEEEEcCccccC------CceEEeccCCCceeEEEEcCC---------------------CCEEEEEE
Q ss_pred -cCccEEEEeCCC
Q 002290 815 -ESGHGKRVPLSS 826 (941)
Q Consensus 815 -e~G~gKR~~lse 826 (941)
.+|.++...+..
T Consensus 287 ~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 287 KGDSSIRYFEITS 299 (402)
T ss_dssp TTCSCEEEEEECS
T ss_pred cCCCeEEEEEecC
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.58 E-value=88 Score=26.66 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002290 516 KKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVI 551 (941)
Q Consensus 516 ~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~ 551 (941)
.+-.+|+..+.+.|++|+..|...+...+-+..||.
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555566666655554444444444443
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.52 E-value=5.7e+02 Score=27.00 Aligned_cols=145 Identities=10% Similarity=0.043 Sum_probs=82.7
Q ss_pred CCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcccc
Q 002290 581 NDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNAA 660 (941)
Q Consensus 581 ~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a~ 660 (941)
....++..+.+|.|+--....-.. ........++.+..+....+.+.|+..+.+|.+..... ..
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~---~~------ 165 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADSGSV-------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV---ES------ 165 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCE-------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET---TT------
T ss_pred cCCCEEEEECCCeEEEeeCCCCcE-------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC---cC------
Confidence 345678888999988766543211 11122223455666666666777777788897765543 22
Q ss_pred CcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecCCCeE
Q 002290 661 GTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTNDDLV 739 (941)
Q Consensus 661 G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~~d~I 739 (941)
|..+.. +. .....|.++.. ++.+++..+.+|.++.-++..- +.....+. ....+..+....+...+
T Consensus 166 ~~~~~~-~~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l 232 (401)
T 4aez_A 166 QTKLRT-MA-GHQARVGCLSW-----NRHVLSSGSRSGAIHHHDVRIA------NHQIGTLQGHSSEVCGLAWRSDGLQL 232 (401)
T ss_dssp CCEEEE-EC-CCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CeEEEE-ec-CCCCceEEEEE-----CCCEEEEEcCCCCEEEEecccC------cceeeEEcCCCCCeeEEEEcCCCCEE
Confidence 211111 11 23345555543 3468999999999998776521 11122222 23345555444455667
Q ss_pred EEEecCCcEEEEecc
Q 002290 740 AMASQNGMVILSSCD 754 (941)
Q Consensus 740 ll~T~~G~vir~~v~ 754 (941)
+..+.+|.+..+...
T Consensus 233 ~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 233 ASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEEETTSCEEEEETT
T ss_pred EEEeCCCeEEEccCC
Confidence 777888887777654
No 96
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=27.14 E-value=4.9e+02 Score=26.14 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred eEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCCCeEEEEecCCcEEEEec
Q 002290 675 RITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTNDDLVAMASQNGMVILSSC 753 (941)
Q Consensus 675 ~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v 753 (941)
.|.++... +++.+++..+.+|.++.-++..- .....+.. .+.+..+........++..+.+|.+.....
T Consensus 67 ~v~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 67 GISDVAWS---SDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp CEEEEEEC---TTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ceEEEEEc---CCCCEEEEECCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 45554433 25678999999999998776532 12222332 334444444444566677788888776654
Q ss_pred ccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 754 DIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 754 ~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
.. |..+..+.. .+.|.++...++ +..++..+.+|.++...+..
T Consensus 137 ~~---------~~~~~~~~~~~~~v~~~~~~~~---------------------~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 137 KT---------GKCLKTLPAHSDPVSAVHFNRD---------------------GSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp TT---------CCEEEEECCCSSCEEEEEECTT---------------------SSEEEEEETTSCEEEEETTT
T ss_pred CC---------CEEEEEecCCCCcEEEEEEcCC---------------------CCEEEEEeCCCcEEEEECCC
Confidence 32 222223322 234555544332 35688888899888887653
No 97
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=26.77 E-value=5e+02 Score=26.09 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=104.8
Q ss_pred CCccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeCCceEEEEccCCeEEEEEecc
Q 002290 573 LDDIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYK 651 (941)
Q Consensus 573 ~~~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~e 651 (941)
+.....-++.++++..+.+|.|+--....-. ....+... ..+..+....+...|+..+.+|.+... +
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw---d 93 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW---D 93 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE---E
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE---E
Confidence 4444456788899999999999876543211 11122222 234444444455556666677766544 4
Q ss_pred cCCcCccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEE
Q 002290 652 IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWV 730 (941)
Q Consensus 652 Ip~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v 730 (941)
+... ..+. .+. .....|..+... ++..+++..+.+|.++.-++.. +.....+.. .+.+..+
T Consensus 94 ~~~~------~~~~-~~~-~~~~~v~~~~~~---~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 94 VSSG------KCLK-TLK-GHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKT-------GKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp TTTC------CEEE-EEE-CCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEEE
T ss_pred CCCC------cEEE-EEc-CCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCC-------CEEEEEecCCCCcEEEE
Confidence 4322 1111 111 123345444432 2567899999999999877643 222223332 3344444
Q ss_pred EEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeC--CCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCC
Q 002290 731 RCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRL--KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGP 808 (941)
Q Consensus 731 ~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L--~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (941)
....+...++..+.+|.+..+.... |..+..+ ..+..+..+...++ +.
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 205 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTAS---------GQCLKTLIDDDNPPVSFVKFSPN---------------------GK 205 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCSSCCCEEEEEECTT---------------------SS
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---------CceeeEEeccCCCceEEEEECCC---------------------CC
Confidence 4444556677778888876665431 1122222 22233444433332 46
Q ss_pred cEEEEecCccEEEEeCCC
Q 002290 809 WLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 809 ~lllvTe~G~gKR~~lse 826 (941)
.++..+.+|.++...+..
T Consensus 206 ~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEEETTTEEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCC
Confidence 788889999888887653
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=26.47 E-value=5.1e+02 Score=26.14 Aligned_cols=222 Identities=11% Similarity=-0.019 Sum_probs=0.0
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEE--eeCCceEEEEccCCeEEEEEecccCCcCc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIV--CRAHDHVLYFSDRGIVYSARAYKIPECTR 657 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~--~~~~d~ll~fT~~G~v~~~~~~eIp~~~r 657 (941)
++..+++..+.+|.|+--.... +.......-.+.+..+.. ..+...++..+.+|.+.......
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------ 160 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSS---------NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS------ 160 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTT---------TEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC------
T ss_pred cCCCEEEEEcCCCcEEEEEcCC---------CCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC------
Q ss_pred cccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCCCeEEEEEEecCCC
Q 002290 658 NAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPGDELKWVRCCTNDD 737 (941)
Q Consensus 658 ~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~gD~Lv~v~~~~~~d 737 (941)
| .....+...+.+..+.. ..+.+++.+.+|.+....+..-... ...+..........+.......
T Consensus 161 ---~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 161 ---S---NPMMVLQLPERCYCADV-----IYPMAVVATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp ---S---SCSEEEECSSCEEEEEE-----ETTEEEEEEGGGCEEEEECSSSCEE----EEECCCSCSSCEEEEEEEECTT
T ss_pred ---C---cEEEEEecCCCceEEEe-----cCCeeEEEeCCCcEEEEEeccccch----hhhccccccCCCceEEEcccCC
Q ss_pred e----EEEEecCCcEEEEecccc-------cccCCCCCCeeeeeCCCCCeEEEEEEecccccccccCCCCCCCCCCCCCC
Q 002290 738 L----VAMASQNGMVILSSCDII-------RSLSRNTRGSVAMRLKDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSS 806 (941)
Q Consensus 738 ~----Ill~T~~G~vir~~v~eI-------~~~gR~a~GV~li~L~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (941)
. ++..+.+|.+..+....- ...+-...+...........|.++...++
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------- 284 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV--------------------- 284 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT---------------------
T ss_pred CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC---------------------
Q ss_pred CCcEEEEecCccEEEEeCCCc---cccCCCcceeEEEEccCCCcEEEEE
Q 002290 807 GPWLLFVSESGHGKRVPLSSF---RKLPLNRVGLIGYKFSAEDRLAAVF 852 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~---~~~~R~~kGv~~ikl~~~D~lv~~~ 852 (941)
+..++..+.+|.++...+... ....-....+..+.+..+...+++.
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
No 99
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=25.64 E-value=7.1e+02 Score=27.48 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=41.3
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEcc-CCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEecCcc
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFS-AEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDI 885 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~-~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~v~eI 885 (941)
.+-++++|+.||..-..+.. |...+.-+ ..|.+..+..- +...-++.++.+|+++.+.+++-
T Consensus 271 ygviyviTK~G~ihlyDleT---------gt~i~~nrIS~d~iF~ta~~--------~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 271 HDVVFLITKYGYIHLYDLET---------GTCIYMNRISGETIFVTAPH--------EATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TTEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEE--------GGGTEEEEEETTCEEEEEEECTT
T ss_pred CCEEEEEeCCcEEEEEEccc---------CcEEEEeccCCCceEEeccc--------CCCCcEEEEcCCCEEEEEEECcc
Confidence 36799999999999888763 22222222 34554333221 23356999999999999999874
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=25.34 E-value=5.9e+02 Score=26.42 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=103.4
Q ss_pred ceEEEEccCCeEEEEEecccCCcCccccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccccccc
Q 002290 633 DHVLYFSDRGIVYSARAYKIPECTRNAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSI 711 (941)
Q Consensus 633 d~ll~fT~~G~v~~~~~~eIp~~~r~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~ 711 (941)
..++..+.+|.+..... .... . ...+.+ .....|.++.... .+..+++..+.+|.++--++..
T Consensus 87 ~~l~s~~~dg~i~iwd~---~~~~------~-~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~---- 150 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDY---DVQN------K-TSFIQGMGPGDAITGMKFNQ--FNTNQLFVSSIRGATTLRDFSG---- 150 (383)
T ss_dssp TEEEEEEBTSCEEEEET---TSTT------C-EEEECCCSTTCBEEEEEEET--TEEEEEEEEETTTEEEEEETTS----
T ss_pred CEEEEEcCCCeEEEEeC---CCcc------c-ceeeecCCcCCceeEEEeCC--CCCCEEEEEeCCCEEEEEECCC----
Confidence 45666667777655443 2211 0 122222 2445666665432 1357888899999998877652
Q ss_pred ccCceEEEecCC--CCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCC-CCCeEEEEEEeccccc
Q 002290 712 RTTGIIAIQLVP--GDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK-DGDKMASMDIIPAALH 788 (941)
Q Consensus 712 ~r~G~~~ikLk~--gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~-~gD~Ivsv~~~~~~~~ 788 (941)
..+..+.... .+.+..+....+...++..+.+|.+..+... |..+..+. -...|.++...++
T Consensus 151 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----------~~~~~~~~~h~~~v~~~~~~~~--- 215 (383)
T 3ei3_B 151 --SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----------GHEIFKEKLHKAKVTHAEFNPR--- 215 (383)
T ss_dssp --CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----------SCEEEEEECSSSCEEEEEECSS---
T ss_pred --CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----------CCEEEEeccCCCcEEEEEECCC---
Confidence 1122222222 2445555555566778888888887777642 22333332 2345666655543
Q ss_pred ccccCCCCCCCCCCCCCCCC-cEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCC-CCc
Q 002290 789 KDLERTPEDSHSNVKGSSGP-WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE-SDE 866 (941)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~-~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~-~~d 866 (941)
+. .++..+.+|.++...+......+ .....+...+.+.++.+. . +..
T Consensus 216 ------------------~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~v~~~~~s--------~~~~~ 264 (383)
T 3ei3_B 216 ------------------CDWLMATSSVDATVKLWDLRNIKDKN-----SYIAEMPHEKPVNAAYFN--------PTDST 264 (383)
T ss_dssp ------------------CTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEEEECSSCEEEEEEC--------TTTSC
T ss_pred ------------------CCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEEecCCCceEEEEEc--------CCCCC
Confidence 24 57788889999888776533221 111222233444444331 1 234
Q ss_pred eEEEEecCCeEEEEecCc
Q 002290 867 QVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 867 eIllvT~~G~~iR~~v~e 884 (941)
.++..+..|.+..+++..
T Consensus 265 ~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEESSSEEEEEETTB
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 566677778877777654
No 101
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.24 E-value=1.3e+02 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 002290 514 ERKKFVDESKTLMEQILKLEELLSSRKNILQLIEQEVIELKNRFS 558 (941)
Q Consensus 514 e~~kL~~E~~~l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg 558 (941)
++..|+.|...|..+++.|.. -..-+..|+..+|.+|-
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345666666666666666654 33567788999998884
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.80 E-value=1.3e+02 Score=28.71 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=5.3
Q ss_pred hcChHHHHHH
Q 002290 465 LDNLDRVIRI 474 (941)
Q Consensus 465 ~~~iD~vI~i 474 (941)
++..|+..+.
T Consensus 64 LNiadEl~k~ 73 (138)
T 3hnw_A 64 LNIADDYFKA 73 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444666654
No 103
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=24.48 E-value=3.2e+02 Score=33.16 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----Hhhc-ChHHHHHHHhc
Q 002290 430 QAFLDFRCSVVERRARFKLSQVKERRHIVEGIM----VGLD-NLDRVIRIVRE 477 (941)
Q Consensus 430 ~~f~~~R~~~~~rR~~~~L~k~~~r~~ilegli----~~~~-~iD~vI~iIr~ 477 (941)
.+++..|.++..++.+++|++++.+.+++...+ .+.. ...++++-+++
T Consensus 582 ~ev~~rR~~~~l~k~~~~l~~l~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~ 634 (757)
T 3l4j_A 582 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELEN 634 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeeEEcCCcHHHHHHHHHH
Confidence 468899999999999999999999999775444 3322 23556655544
No 104
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=24.08 E-value=6.4e+02 Score=26.38 Aligned_cols=255 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCccc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRNA 659 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~a 659 (941)
++...++..+.+|.|+-........... +...+.........+...|+..+.+|.+.......-.....-.
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGSKM---------LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETTTT---------SCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ecCCeEEEEEcCCcEEEEEecccceeeE---------EecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Q ss_pred cCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCC-CCeEEEEEEecCCCe
Q 002290 660 AGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVP-GDELKWVRCCTNDDL 738 (941)
Q Consensus 660 ~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~-gD~Lv~v~~~~~~d~ 738 (941)
.- ...|.++.... ++.+++..+.+|.++.-++.. |.....+.. .+.+..+....+...
T Consensus 137 ~h-----------~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 137 AH-----------VSEITKLKFFP---SGEALISSSQDMQLKIWSVKD-------GSNPRTLIGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp SS-----------SSCEEEEEECT---TSSEEEEEETTSEEEEEETTT-------CCCCEEEECCSSCEEEEEEETTTTE
T ss_pred cc-----------cCccEEEEECC---CCCEEEEEeCCCeEEEEeCCC-------CcCceEEcCCCCcEEEEEEcCCCCE
Q ss_pred EEEEecCCcEEEEecccccccCCCCCCeeeeeCC----CCCeEEEEEEe---------------------cccccccccC
Q 002290 739 VAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLK----DGDKMASMDII---------------------PAALHKDLER 793 (941)
Q Consensus 739 Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~----~gD~Ivsv~~~---------------------~~~~~~~~~~ 793 (941)
++..+.+|.+...... .|..+..+. ..+.|.++... ++
T Consensus 196 l~s~~~d~~v~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------- 258 (420)
T 3vl1_A 196 VLSASLDGTIRLWECG---------TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-------- 258 (420)
T ss_dssp EEEEETTSCEEEEETT---------TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT--------
T ss_pred EEEEcCCCcEEEeECC---------CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC--------
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCc-eEEEEe
Q 002290 794 TPEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDE-QVVLVS 872 (941)
Q Consensus 794 ~~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~d-eIllvT 872 (941)
+..++..+.+|.++...+ +.+.-+..+...-...+.++.+. .... .++..+
T Consensus 259 -------------~~~l~~~~~dg~i~i~d~-------~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~g~ 310 (420)
T 3vl1_A 259 -------------GKYVIAGHVSGVITVHNV-------FSKEQTIQLPSKFTCSCNSLTVD--------GNNANYIYAGY 310 (420)
T ss_dssp -------------TEEEEEEETTSCEEEEET-------TTCCEEEEECCTTSSCEEEEEEC--------SSCTTEEEEEE
T ss_pred -------------CCEEEEEcCCCeEEEEEC-------CCCceeEEcccccCCCceeEEEe--------CCCCCEEEEEe
Q ss_pred cCCeEEEEecCcc-----ccccccCCceEEEEcCCCCeEEEE
Q 002290 873 QSGTVNRIKVRDI-----SIQARYARGVILMRLELSGKIQSA 909 (941)
Q Consensus 873 ~~G~~iR~~v~eI-----~~~gR~a~GV~lmkL~~~d~Vvsv 909 (941)
..|.+...++..- ...+-....+..+...++..++++
T Consensus 311 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS 352 (420)
T ss_dssp TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
No 105
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.04 E-value=1.4e+02 Score=21.73 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+++.+...|+++|..
T Consensus 8 dKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 34788888999999999999988864
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=22.84 E-value=1.2e+03 Score=28.97 Aligned_cols=148 Identities=12% Similarity=0.098 Sum_probs=79.6
Q ss_pred cccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccC-CCceeEEEEeeCCceEEEEccCCeEEEEEecccCCcC
Q 002290 578 IIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRV-NDAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECT 656 (941)
Q Consensus 578 lI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke-~D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~ 656 (941)
.-++..+++..+.+|.|+--..... .....++. .+.+..+....+...++..+.+|.+.... +..
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~---------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd---~~~-- 688 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETG---------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---SAT-- 688 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE---TTT--
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCC---------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE---CCC--
Confidence 3467788888899999887655432 12223332 23444444445555666667778765443 332
Q ss_pred ccccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEecC
Q 002290 657 RNAAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCTN 735 (941)
Q Consensus 657 r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~~ 735 (941)
|..+.. +. .....|..+.... ..+..+++..+.+|.++--++..- .....+. -.+.+..+....+
T Consensus 689 ----~~~~~~-~~-~~~~~v~~~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 689 ----GKLVHT-YD-EHSEQVNCCHFTN-KSNHLLLATGSNDFFLKLWDLNQK-------ECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp ----CCEEEE-EE-CCSSCEEEEEECS-SSSCCEEEEEETTSCEEEEETTSS-------SEEEEECCCSSCEEEEEECSS
T ss_pred ----CceEEE-Ec-CCCCcEEEEEEec-CCCceEEEEEeCCCeEEEEECCCc-------chhheecCCCCCEEEEEEecC
Confidence 222111 11 1334555554332 224457788889999988776432 1222222 2334444444444
Q ss_pred CCeEEEEecCCcEEEEec
Q 002290 736 DDLVAMASQNGMVILSSC 753 (941)
Q Consensus 736 ~d~Ill~T~~G~vir~~v 753 (941)
...++..+.+|.+.....
T Consensus 755 ~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDV 772 (1249)
T ss_dssp TTEEEEEESSSEEEEEEG
T ss_pred CCEEEEEECCCeEEEEeC
Confidence 556666677777666554
No 107
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=22.36 E-value=6.7e+02 Score=26.02 Aligned_cols=236 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred cCCc-eEEEE----------ccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCceEEEEccCCeEEEEE
Q 002290 580 PNDE-MLLAI----------SEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSAR 648 (941)
Q Consensus 580 ~~e~-~lv~l----------T~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~~ 648 (941)
|+.. +++.. +.+|.|+--....-... .....+...+.+..+....+...|+..+.+|.+....
T Consensus 22 p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~ 95 (416)
T 2pm9_A 22 HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYS 95 (416)
T ss_dssp SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEEC
T ss_pred CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------cEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEee
Q ss_pred ecc---cCCcCccccCcccccccccCCCCeEEEEEeccccCC-CcEEEEEeccceEEEeecccccccccCce------EE
Q 002290 649 AYK---IPECTRNAAGTPLVQILSLSDGERITSIIPVSEFAG-DQFLVMLTMNGYIKKVSLNLFSSIRTTGI------IA 718 (941)
Q Consensus 649 ~~e---Ip~~~r~a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~-~~~lllvT~~GyiKR~~l~~f~~~~r~G~------~~ 718 (941)
... -...-+.-.| ....|.++.... + ..+++..+.+|.++.-++.. +. ..
T Consensus 96 ~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~ 155 (416)
T 2pm9_A 96 TNEANNAINSMARFSN----------HSSSVKTVKFNA---KQDNVLASGGNNGEIFIWDMNK-------CTESPSNYTP 155 (416)
T ss_dssp CSSTTSCCCEEEECCC----------SSSCCCEEEECS---SSTTBEEEECSSSCEEBCBTTT-------TSSCTTTCCC
T ss_pred cccccccccchhhccC----------CccceEEEEEcC---CCCCEEEEEcCCCeEEEEECCC-------Cccccccccc
Q ss_pred Eec----CCCCeEEEEEEecC-CCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-------CCeEEEEEEeccc
Q 002290 719 IQL----VPGDELKWVRCCTN-DDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-------GDKMASMDIIPAA 786 (941)
Q Consensus 719 ikL----k~gD~Lv~v~~~~~-~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-------gD~Ivsv~~~~~~ 786 (941)
..+ ...+.+..+..... ...++..+.+|.+..++... |..+..+.. ...|.++...+++
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---------KKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---------TEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---------CCcceEEeccccccccCCceEEEEECCCC
Q ss_pred ccccccCCCCCCCCCCCCCCCCcEEEEecCc---cEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCC
Q 002290 787 LHKDLERTPEDSHSNVKGSSGPWLLFVSESG---HGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGE 863 (941)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G---~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~ 863 (941)
...++..+.+| .++...+.......+. +.......+.++.+. .
T Consensus 227 --------------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~------~~~~~~~~v~~~~~s--------~ 272 (416)
T 2pm9_A 227 --------------------STRVATATGSDNDPSILIWDLRNANTPLQT------LNQGHQKGILSLDWC--------H 272 (416)
T ss_dssp --------------------TTEEEEEECCSSSCCCCEEETTSTTSCSBC------CCSCCSSCEEEEEEC--------S
T ss_pred --------------------CCEEEEEECCCCCceEEEEeCCCCCCCcEE------eecCccCceeEEEeC--------C
Q ss_pred -CCceEEEEecCCeEEEEecCc
Q 002290 864 -SDEQVVLVSQSGTVNRIKVRD 884 (941)
Q Consensus 864 -~~deIllvT~~G~~iR~~v~e 884 (941)
+...++..+..|.+...++..
T Consensus 273 ~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 273 QDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp SCSSCEEEEESSSEEEEECSSS
T ss_pred CCCCeEEEEeCCCCEEEeeCCC
No 108
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.29 E-value=1.8e+02 Score=25.29 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=30.5
Q ss_pred HHhCCCHHHHHHHHhccHH-Hh-hH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 002290 490 DEFKLSEKQADAILDMNLR-RL-TM-LERKKFVDESKTLMEQILKLEELL 536 (941)
Q Consensus 490 ~~f~~s~~qaeaIL~M~L~-rL-T~-le~~kL~~E~~~l~~ei~~l~~lL 536 (941)
+..|||-++...+|++.-. .. +- .-..-|.++.++++++|++|+.++
T Consensus 13 r~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~ 62 (99)
T 1q08_A 13 RQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQ 62 (99)
T ss_dssp HHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888875321 11 11 224567777888888888887753
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=22.07 E-value=6.1e+02 Score=25.45 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=137.6
Q ss_pred ccccccCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCCCceeEEEEeeCCc-eEEEEccCCeEEEEEecccC
Q 002290 575 DIDIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCRAHD-HVLYFSDRGIVYSARAYKIP 653 (941)
Q Consensus 575 ~~dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~D~l~~~~~~~~~d-~ll~fT~~G~v~~~~~~eIp 653 (941)
....-++..++++.+.+|.|+-.......... .......-...+..+....+.. .|+..+.+|.++..... .
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~--~ 88 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI--G 88 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS--S
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec--c
Confidence 33345677889999999998866543321000 0011112233455555555556 67778888987765430 2
Q ss_pred CcCccccCccccccccc-CCCCeEEEEEeccccCCCcEEEEEeccceEEEeeccccccccc--CceEEEecCCCCeEEEE
Q 002290 654 ECTRNAAGTPLVQILSL-SDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRT--TGIIAIQLVPGDELKWV 730 (941)
Q Consensus 654 ~~~r~a~G~pl~~~i~L-~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r--~G~~~ikLk~gD~Lv~v 730 (941)
... ...+.- .....|.++... + ...++..+.+|.++.-++..+....- .+.....+.-.+.+..+
T Consensus 89 ~~~--------~~~~~~~~~~~~v~~l~~~---~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (342)
T 1yfq_A 89 SPS--------FQALTNNEANLGICRICKY---G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp SSS--------EEECBSCCCCSCEEEEEEE---T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred CCc--------eEeccccCCCCceEEEEeC---C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE
Confidence 211 011111 134456655443 2 67899999999999887765311000 00000012223344443
Q ss_pred EEecCCCeEEEEecCCcEEEEeccc-ccccCCCCCCeeeeeCCCCCeEEEEEEec-ccccccccCCCCCCCCCCCCCCCC
Q 002290 731 RCCTNDDLVAMASQNGMVILSSCDI-IRSLSRNTRGSVAMRLKDGDKMASMDIIP-AALHKDLERTPEDSHSNVKGSSGP 808 (941)
Q Consensus 731 ~~~~~~d~Ill~T~~G~vir~~v~e-I~~~gR~a~GV~li~L~~gD~Ivsv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 808 (941)
... .+.++..+.+|.+..+.... -.. -...........|.++...+ + +.
T Consensus 157 ~~~--~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~~i~~i~~~~~~---------------------~~ 207 (342)
T 1yfq_A 157 DTN--SSRLIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPKE---------------------QE 207 (342)
T ss_dssp EEC--SSEEEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSGG---------------------GC
T ss_pred Eec--CCcEEEEeCCCeEEEEECCccccc------cceeeecCCCCceeEEEECCCC---------------------CC
Confidence 332 33488888888887776543 110 01112222234566665554 3 35
Q ss_pred cEEEEecCccEEEEeCCCccccCCCcceeEEEEccC--------CCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEE
Q 002290 809 WLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSA--------EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRI 880 (941)
Q Consensus 809 ~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~--------~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~ 880 (941)
.++..+.+|.++...++.-... ....-+..++... ...+.++.+. .+...++..+..|.+..+
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDD-YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS--------PRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCS-TTCTTCEEEECCCCCTTCCSSCCCEEEEEEC--------TTTCCEEEEETTSCEEEE
T ss_pred EEEEEecCCcEEEEEEcCCCcc-cccccceeeecccccccccccceeEEEEEEc--------CCCCEEEEecCCceEEEE
Confidence 7888889998877655432000 0001122232211 1144333322 123457777888888888
Q ss_pred ecCcccc---cccc-CCceEEEEcCCCCeEEEE
Q 002290 881 KVRDISI---QARY-ARGVILMRLELSGKIQSA 909 (941)
Q Consensus 881 ~v~eI~~---~gR~-a~GV~lmkL~~~d~Vvsv 909 (941)
++..-.. .... ...|..+. .++..++++
T Consensus 279 d~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~ 310 (342)
T 1yfq_A 279 NLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLA 310 (342)
T ss_dssp ETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEE
T ss_pred cCccHhHhhhhhcccCCCceEec-CCCCeEEEE
Confidence 7764322 1112 34455555 445555544
No 110
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=21.73 E-value=6.3e+02 Score=25.47 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=71.0
Q ss_pred CCCeEEEEEeccccC-CCcEEEEEeccceEEEeecccccccccCceEEEecC-CCCeEEEEEEec-CCCeEEEEecCCcE
Q 002290 672 DGERITSIIPVSEFA-GDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLV-PGDELKWVRCCT-NDDLVAMASQNGMV 748 (941)
Q Consensus 672 ~~E~Iv~i~~v~~~~-~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk-~gD~Lv~v~~~~-~~d~Ill~T~~G~v 748 (941)
.++.|.++....+.. .+.+++..+.+|.++--.+... .....+. -.+.+..+.... +...++..+.+|.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 345666665443211 1568999999999998876542 1222333 244555554444 45667777888887
Q ss_pred EEEecccccccCCCCCCeeeeeC----CCCCeEEEEEEecccccccccCCCCCCCCCCCCCCCCcEEEEecCccEEEEeC
Q 002290 749 ILSSCDIIRSLSRNTRGSVAMRL----KDGDKMASMDIIPAALHKDLERTPEDSHSNVKGSSGPWLLFVSESGHGKRVPL 824 (941)
Q Consensus 749 ir~~v~eI~~~gR~a~GV~li~L----~~gD~Ivsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lllvTe~G~gKR~~l 824 (941)
....... |.....+ .....|.++...++ +..++..+.+|.++...+
T Consensus 141 ~iwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 141 RLWNIQT---------DTLVAIFGGVEGHRDEVLSADYDLL---------------------GEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp EEEETTT---------TEEEEEECSTTSCSSCEEEEEECTT---------------------SSEEEEEETTSCEEEEES
T ss_pred EEEEeec---------CeEEEEecccccccCceeEEEECCC---------------------CCEEEEecCCCCEEEEEC
Confidence 7776532 2222222 23445666655443 357888888999888887
Q ss_pred CCc
Q 002290 825 SSF 827 (941)
Q Consensus 825 se~ 827 (941)
...
T Consensus 191 ~~~ 193 (366)
T 3k26_A 191 NSK 193 (366)
T ss_dssp CSH
T ss_pred CCC
Confidence 643
No 111
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.58 E-value=1.1e+02 Score=22.20 Aligned_cols=26 Identities=8% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.+...|+.+|..
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 34688889999999999999998864
No 112
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.50 E-value=83 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.+...|+.+|.+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35789999999999999999998864
No 113
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=21.12 E-value=7.2e+02 Score=25.90 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=32.1
Q ss_pred CCcEEEEecCccEEEEeCCCccccCCCcceeEEEEccCCCcEEEEEEEeecccCCCCCCceEEEEecCCeEEEEe
Q 002290 807 GPWLLFVSESGHGKRVPLSSFRKLPLNRVGLIGYKFSAEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIK 881 (941)
Q Consensus 807 ~~~lllvTe~G~gKR~~lse~~~~~R~~kGv~~ikl~~~D~lv~~~~v~~~l~~~~~~~deIllvT~~G~~iR~~ 881 (941)
+..|++.|.+|....+....-.. +--.++. +..+.+..++ .++.|++.|.+|.+..++
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~-------~~~~~~~-~~~~~~~~~~---------~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRF-------VAQQKVD-SSGFQTEPVA---------ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-------EEEEECC-TTCBCSCCEE---------ETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcE-------EEEEecC-CCcceeCCEE---------ECCEEEEEeCCCEEEEEe
Confidence 35788888888777776543211 1112221 1222111122 246789999999887664
No 114
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=20.85 E-value=93 Score=29.29 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 002290 525 LMEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLE 566 (941)
Q Consensus 525 l~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~ 566 (941)
.+....-|+.||.|+..+..++...|.++.+.++.-||.+-.
T Consensus 74 r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~~~rq~~l 115 (126)
T 3h3m_A 74 RGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQSL 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Confidence 345567789999999999999999999999999988776543
No 115
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=20.83 E-value=8e+02 Score=26.37 Aligned_cols=264 Identities=11% Similarity=0.043 Sum_probs=118.3
Q ss_pred ccccCCceEEEEccCceEEEeCCCccccccCCCCCccc---------ccccCCCceeEEEEeeCCceEEEEccCCeEEEE
Q 002290 577 DIIPNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSV---------GKLRVNDAMSDFIVCRAHDHVLYFSDRGIVYSA 647 (941)
Q Consensus 577 dlI~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~---------~~Lke~D~l~~~~~~~~~d~ll~fT~~G~v~~~ 647 (941)
++..+++.++.++.+|-+---=.+. .|..|... +..-.+..+++ .+-+.++.+++|++|++|..
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~-----~GqLG~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~l~~~G~v~~w 77 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNH-----RGQLGGIEGAKVKVPTPCEALATLRPVQ--LIGGEQTLFAVTADGKLYAT 77 (389)
T ss_dssp ----------------CEEEEEECT-----TSTTSSCSCSEEEEEEECHHHHHTCEEE--EEEETTEEEEEETTSCEEEE
T ss_pred ccccCcccceeECCCCeEEEeeCCC-----CccCCCCcCccccCCEecccccCCceEE--EEeCCCeEEEEcCCCcEEEE
Confidence 4455667777888888776432222 22222100 00001112333 34567888999999999988
Q ss_pred EecccCCcCcccc-CcccccccccCCCCeE--EEEEeccccCCCcEEEEEeccceEEEeecccccccccCc---eEE-Ee
Q 002290 648 RAYKIPECTRNAA-GTPLVQILSLSDGERI--TSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTG---IIA-IQ 720 (941)
Q Consensus 648 ~~~eIp~~~r~a~-G~pl~~~i~L~~~E~I--v~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G---~~~-ik 720 (941)
-...--..+.... -......+....+..+ +++. ....+.+.+|++|.+----...+-....+. ... ..
T Consensus 78 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~-----~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 152 (389)
T 3kci_A 78 GYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVN-----SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRV 152 (389)
T ss_dssp ECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEEC-----TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred ECCCCCCCCCCCcCCccCCEEcccccCCceeEEEEC-----cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeE
Confidence 6543211111000 0001112222222222 3322 145678889999987766555543322111 011 11
Q ss_pred c--CCCCeEEEEEEecCCCeEEEEecCCcEEEEecccccccCCCCCCee----eeeCCCCCeEEEEEEecccccccccCC
Q 002290 721 L--VPGDELKWVRCCTNDDLVAMASQNGMVILSSCDIIRSLSRNTRGSV----AMRLKDGDKMASMDIIPAALHKDLERT 794 (941)
Q Consensus 721 L--k~gD~Lv~v~~~~~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~----li~L~~gD~Ivsv~~~~~~~~~~~~~~ 794 (941)
+ -.+..++.+ .....+.+++|++|.++..-...--..|....-.. .+..-.+.+|+.+..-.
T Consensus 153 v~~l~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~---------- 220 (389)
T 3kci_A 153 IESLRGIEVVDV--AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS---------- 220 (389)
T ss_dssp CGGGTTSCEEEE--EECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC----------
T ss_pred ecccCCCeEEEE--EeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC----------
Confidence 1 123344433 44677889999999999887654333332221111 11122344555554321
Q ss_pred CCCCCCCCCCCCCCcEEEEecCccEEEEeCCCccccCCCccee--EEEEcc--CCCcEEEEEEEeecccCCCCCCceEEE
Q 002290 795 PEDSHSNVKGSSGPWLLFVSESGHGKRVPLSSFRKLPLNRVGL--IGYKFS--AEDRLAAVFVVGFSLAEDGESDEQVVL 870 (941)
Q Consensus 795 ~~~~~~~~~~~~~~~lllvTe~G~gKR~~lse~~~~~R~~kGv--~~ikl~--~~D~lv~~~~v~~~l~~~~~~~deIll 870 (941)
...+.+++|++|.+.-.-..++-..+.+..-. .-.++. .+..++.+.. .....++
T Consensus 221 -----------g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~----------G~~hs~a 279 (389)
T 3kci_A 221 -----------GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC----------GSQFSVA 279 (389)
T ss_dssp -----------SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE----------ETTEEEE
T ss_pred -----------CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC----------CCCEEEE
Confidence 12467888999887766666555444332111 111121 1223433321 2456778
Q ss_pred EecCCeEEEEecCcc
Q 002290 871 VSQSGTVNRIKVRDI 885 (941)
Q Consensus 871 vT~~G~~iR~~v~eI 885 (941)
+|++|.+.-.--++.
T Consensus 280 lt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 280 LTKSGAVYTWGKGDY 294 (389)
T ss_dssp EETTSCEEEEECCGG
T ss_pred EeCCCeEEEEeCCCC
Confidence 899998887655543
No 116
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=20.70 E-value=7.9e+02 Score=26.20 Aligned_cols=187 Identities=10% Similarity=0.121 Sum_probs=97.7
Q ss_pred cCCceEEEEccCceEEEeCCCccccccCCCCCcccccccCC-CceeEEEEeeCCceEEEEccCCeEEEEEecccCCcCcc
Q 002290 580 PNDEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN-DAMSDFIVCRAHDHVLYFSDRGIVYSARAYKIPECTRN 658 (941)
Q Consensus 580 ~~e~~lv~lT~~GyIKR~~~~~f~~~~rg~~G~~~~~Lke~-D~l~~~~~~~~~d~ll~fT~~G~v~~~~~~eIp~~~r~ 658 (941)
++..+++..+.+|.|+--....+.. ...+... +.+..+....+.+.|+..+.+|.+... ++..
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~~~---------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w---d~~~---- 223 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGFEC---------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW---EVQT---- 223 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSSCE---------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE---ETTT----
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCce---------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE---ECCC----
Confidence 5566777888888877655443321 1122222 234444444556667777777876544 4432
Q ss_pred ccCcccccccccCCCCeEEEEEeccccCCCcEEEEEeccceEEEeecccccccccCceEEEecCCC-CeEEEEEEec---
Q 002290 659 AAGTPLVQILSLSDGERITSIIPVSEFAGDQFLVMLTMNGYIKKVSLNLFSSIRTTGIIAIQLVPG-DELKWVRCCT--- 734 (941)
Q Consensus 659 a~G~pl~~~i~L~~~E~Iv~i~~v~~~~~~~~lllvT~~GyiKR~~l~~f~~~~r~G~~~ikLk~g-D~Lv~v~~~~--- 734 (941)
|..+.. +. ...+.|..+... +++.+++..+.+|.++--.+..-. ....+... ..+..+....
T Consensus 224 --~~~~~~-~~-~h~~~v~~~~~~---~~g~~l~s~s~D~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 224 --GYCVKT-FT-GHREWVRMVRPN---QDGTLIASCSNDQTVRVWVVATKE-------CKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp --CCEEEE-EE-CCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECCSCG
T ss_pred --CcEEEE-Ee-CCCccEEEEEEC---CCCCEEEEEcCCCeEEEEECCCCc-------eeeEecCCCceEEEEEEcCccc
Confidence 211111 11 122344444332 356788899999999887664321 11122221 1122221111
Q ss_pred -----------------CCCeEEEEecCCcEEEEecccccccCCCCCCeeeeeCCC-CCeEEEEEEecccccccccCCCC
Q 002290 735 -----------------NDDLVAMASQNGMVILSSCDIIRSLSRNTRGSVAMRLKD-GDKMASMDIIPAALHKDLERTPE 796 (941)
Q Consensus 735 -----------------~~d~Ill~T~~G~vir~~v~eI~~~gR~a~GV~li~L~~-gD~Ivsv~~~~~~~~~~~~~~~~ 796 (941)
....++..+.+|.+..+... .|..+..+.. .+.|.++...++
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~---------~~~~~~~~~~h~~~v~~v~~~~~----------- 349 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---------TGMCLMTLVGHDNWVRGVLFHSG----------- 349 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECSS-----------
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC---------CCceEEEEECCCCcEEEEEEcCC-----------
Confidence 13456666777776655432 2334444432 334556554433
Q ss_pred CCCCCCCCCCCCcEEEEecCccEEEEeCCC
Q 002290 797 DSHSNVKGSSGPWLLFVSESGHGKRVPLSS 826 (941)
Q Consensus 797 ~~~~~~~~~~~~~lllvTe~G~gKR~~lse 826 (941)
+.+++..+.+|.++...+..
T Consensus 350 ----------g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 350 ----------GKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp ----------SSCEEEEETTTEEEEECCTT
T ss_pred ----------CCEEEEEeCCCeEEEEECCC
Confidence 46788999999998887643
No 117
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.70 E-value=1.3e+02 Score=21.88 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002290 513 LERKKFVDESKTLMEQILKLEELLSS 538 (941)
Q Consensus 513 le~~kL~~E~~~l~~ei~~l~~lL~~ 538 (941)
..+++|..+..+|+.+...|+.+|..
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34789999999999999999998864
No 118
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=20.62 E-value=2e+02 Score=26.43 Aligned_cols=93 Identities=10% Similarity=0.177 Sum_probs=51.4
Q ss_pred eEEEEeecCCCCHHHHHHHHHHHHhcCCCCccccccccCCCC-ceEEEEEeCCCCChHHHHHHHHhhc----ccceeee-
Q 002290 336 GVIIKEIPYQTNKSMLVEKIAELVENKTLDGISDIRDESDRS-GMRIVIELKRGADPSIVVNSLYRLT----ALQSSFS- 409 (941)
Q Consensus 336 ~i~ItElP~~~~~~~~ie~i~~lv~~k~i~~I~di~Des~~~-girivi~lk~~~~~~~~~~~L~k~t----~Lq~s~~- 409 (941)
+|.|.-||+.+..+.+.+.... -|.+..|.=++|.+++. |. --|+.....+++..+..+.... .+...+.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~---~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQV---GGPIANIKIMIDKNNKNVNY-AFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGG---GSCEEEEEEECCCC-CCEEE-EEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEECCCCCcCCHHHHHHHHHh---cCCeEEEEEEECCCCCCCCE-EEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 5889999999998887766543 35554444445544332 32 3456655555555554443221 1111111
Q ss_pred --------eeEEEEECCcccccCHHHHHHHH
Q 002290 410 --------CNMVGILDGQPKQMGLKEVLQAF 432 (941)
Q Consensus 410 --------~N~~~l~~~~pk~~~l~eil~~f 432 (941)
.+..++..+.|...+-.+|.+.|
T Consensus 78 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 108 (166)
T 3md3_A 78 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAF 108 (166)
T ss_dssp CCCCCCCTTCEEEEEESCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCceEEECCCCCCCCHHHHHHHH
Confidence 12234456777777777776665
No 119
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=20.33 E-value=2.4e+02 Score=26.30 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcccccccC
Q 002290 526 MEQILKLEELLSSRKNILQLIEQEVIELKNRFSTPRLSMLEDA 568 (941)
Q Consensus 526 ~~ei~~l~~lL~~~~~~~~~i~~EL~elk~kfg~~RRT~I~~~ 568 (941)
+....-|+.||.|+..+..++...+.++.+.++.-||.+-...
T Consensus 65 ~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~~~~rq~~l~~ 107 (123)
T 3nkz_A 65 DLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNN 107 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455788999999999999999999999999999888765543
Done!