BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002292
         (940 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P28867|KPCD_MOUSE Protein kinase C delta type OS=Mus musculus GN=Prkcd PE=1 SV=3
          Length = 674

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 22/222 (9%)

Query: 515 EALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETI 574
           + + + E +N+  D    F+ Y     TF  H G+ LWG ++  +            E  
Sbjct: 217 DTIFQKERFNI--DMPHRFKVYNYMSPTFCDHCGSLLWGLVKQGLK----------CEDC 264

Query: 575 SFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSV 634
              +    +EKV  +    +N K L + L+ +   +Q+   S R L  +E   +   F  
Sbjct: 265 GMNVHHKCREKVANL--CGINQKLLAEALNQV---TQR---SSRKLDTTESVGIYQGFEK 316

Query: 635 ARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSL-KGAHAHSRSTLEVPIFW 693
               +   +L  NGTY K         +  +  Q++  + S  K   A  +   +     
Sbjct: 317 KPEVSGSDILDNNGTYGKIWEGSTRCTLENFTFQKVLGKGSFGKVLLAELKGKDKYFAIK 376

Query: 694 FIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQS 735
            +  D +L+D   +   +   V+ +  E P + +HL C  Q+
Sbjct: 377 CLKKDVVLIDDDVECTMVEKRVLALAWESP-FLTHLICTFQT 417


>sp|P26749|VG10_BPP22 Packaged DNA stabilization protein gp10 OS=Enterobacteria phage P22
           GN=10 PE=4 SV=3
          Length = 472

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 628 LAMAFSVARRAAAVPMLLVNGTYRKTVRSY----VDSAILQYQLQRMNDRDSLKGAHAHS 683
           ++MA     +A  V   LV   Y  TV++      DS   QY+L  + D   L+G +A S
Sbjct: 95  VSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWS 154

Query: 684 RSTLEVPIFWFI-----HGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLL 737
           +   +    WFI        P      Y+A++  D +I +     +W   + C G S +
Sbjct: 155 KDGTDS---WFITDLEDESHPDRYSAQYRAESQPDGIIGIG----TWRDFIVCFGSSTI 206


>sp|Q21691|NRDE3_CAEEL Nuclear RNAi defective-3 protein OS=Caenorhabditis elegans
           GN=nrde-3 PE=1 SV=1
          Length = 1057

 Score = 33.9 bits (76), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 258 SDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKF 304
           S  E+T +K      TKI+    +P++I+ +D  + P Y+   ++KF
Sbjct: 290 SPDEVTLIKSGFVKTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,056,070
Number of Sequences: 539616
Number of extensions: 14670054
Number of successful extensions: 39432
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39427
Number of HSP's gapped (non-prelim): 8
length of query: 940
length of database: 191,569,459
effective HSP length: 127
effective length of query: 813
effective length of database: 123,038,227
effective search space: 100030078551
effective search space used: 100030078551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)