Query 002292
Match_columns 940
No_of_seqs 69 out of 71
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 20:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0259 Tyrosine aminotransfer 66.6 8.8 0.00019 44.8 5.2 86 171-270 122-229 (447)
2 PF09577 Spore_YpjB: Sporulati 57.0 33 0.00071 37.6 7.2 33 903-935 191-224 (232)
3 COG5509 Uncharacterized small 50.4 12 0.00027 33.3 2.2 42 478-519 22-63 (65)
4 PF05545 FixQ: Cbb3-type cytoc 46.3 12 0.00025 31.2 1.4 23 913-935 13-35 (49)
5 PF06698 DUF1192: Protein of u 42.7 21 0.00046 31.6 2.5 48 472-519 12-59 (59)
6 TIGR02878 spore_ypjB sporulati 40.4 86 0.0019 34.6 7.2 35 901-935 190-225 (233)
7 PF08261 Carcinustatin: Carcin 39.4 14 0.0003 21.1 0.6 7 394-400 1-7 (8)
8 COG5074 t-SNARE complex subuni 34.0 1.4E+02 0.003 33.3 7.4 67 798-869 127-203 (280)
9 cd01324 cbb3_Oxidase_CcoQ Cyto 33.3 26 0.00056 29.6 1.5 24 913-936 14-37 (48)
10 PRK11509 hydrogenase-1 operon 32.1 2.6E+02 0.0057 28.3 8.6 87 575-670 35-123 (132)
11 PF12729 4HB_MCP_1: Four helix 28.3 5.2E+02 0.011 24.5 11.7 72 799-874 72-143 (181)
12 PF10475 DUF2450: Protein of u 26.0 2.9E+02 0.0064 30.6 8.6 40 844-883 116-158 (291)
13 PF03952 Enolase_N: Enolase, N 25.9 1.3E+02 0.0027 30.3 5.2 56 406-464 41-97 (132)
14 COG4736 CcoQ Cbb3-type cytochr 25.1 40 0.00087 30.0 1.3 26 911-936 11-36 (60)
15 PF01102 Glycophorin_A: Glycop 24.4 28 0.0006 34.8 0.3 20 920-939 78-97 (122)
16 TIGR01478 STEVOR variant surfa 23.0 31 0.00068 38.9 0.4 25 912-936 264-288 (295)
17 PTZ00370 STEVOR; Provisional 22.3 33 0.00071 38.8 0.4 24 913-936 261-284 (296)
18 PF13848 Thioredoxin_6: Thiore 20.8 3.5E+02 0.0075 26.5 7.1 151 78-263 27-179 (184)
19 PF10260 SAYSvFN: Uncharacteri 20.2 90 0.002 28.7 2.6 15 32-46 38-52 (71)
No 1
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=66.59 E-value=8.8 Score=44.75 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=64.3
Q ss_pred EeEEEEEEecChhHHHHHHHHHHHhcccCC---CCCC-------------------CCCCcceeeecccchHHHHHHhhh
Q 002292 171 YNFSVHAIQMGEKVTSVFEHAIKVLARKDD---VSTN-------------------RDDVDALWQVDVSMMDVLFTSLVD 228 (940)
Q Consensus 171 ynFs~hvi~~~~~V~~~fE~AI~~~~R~~d---~~~~-------------------~~~~~~~~qvd~~~m~~l~sslv~ 228 (940)
+-++..=|-+-.+-++.+|-||..++||-. .+.| +=-.+..|-+|-+.|++|.|
T Consensus 122 ~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---- 197 (447)
T KOG0259|consen 122 NKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---- 197 (447)
T ss_pred CccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc----
Confidence 567777777778889999999999999877 1111 11146679999999999887
Q ss_pred hhccCCceEEEEECCCCCCCCcccccccCCHHHHHHhhhchH
Q 002292 229 YLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKD 270 (940)
Q Consensus 229 ~L~L~~sY~i~ilNPk~~~~a~YGYR~G~S~~E~~~l~~n~~ 270 (940)
||--.|+|+||++.-..+| |.+-++.+-+-+.
T Consensus 198 ----ENT~AivviNP~NPcGnVy------s~~HL~kiae~A~ 229 (447)
T KOG0259|consen 198 ----ENTVAIVVINPNNPCGNVY------SEDHLKKIAETAK 229 (447)
T ss_pred ----cCeeEEEEeCCCCCCcccc------cHHHHHHHHHHHH
Confidence 6999999999999444666 5556766665443
No 2
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=57.04 E-value=33 Score=37.56 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.7
Q ss_pred cccccccccccccc-hhHHHHHHHhHhhhccCCC
Q 002292 903 RDRKVDVEFDLTTI-PAFLIVLGILYVLLKPRRP 935 (940)
Q Consensus 903 k~~k~~~~~~~~~v-~~~~vv~~~l~~~lrprr~ 935 (940)
++.-.||++-|+.+ .+++|++++.|+.||.-|-
T Consensus 191 k~d~~dpsl~Wv~l~iG~iIi~tLtYvGwRKYrg 224 (232)
T PF09577_consen 191 KEDEADPSLIWVMLSIGGIIIATLTYVGWRKYRG 224 (232)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789989855 6689999999999997653
No 3
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=50.39 E-value=12 Score=33.32 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 002292 478 VKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 519 (940)
Q Consensus 478 ~~~~lC~el~e~~~~Lk~~L~~~~~~~~~~~~~~~a~~~l~r 519 (940)
..+....||.+|+--|..|++.++.+.-.+...+.|-++|+|
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 456667899999999999999999998888889999999987
No 4
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.31 E-value=12 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.1
Q ss_pred cccchhHHHHHHHhHhhhccCCC
Q 002292 913 LTTIPAFLIVLGILYVLLKPRRP 935 (940)
Q Consensus 913 ~~~v~~~~vv~~~l~~~lrprr~ 935 (940)
+.++..++++++++++++|||+.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccch
Confidence 45667788888888999999873
No 5
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.68 E-value=21 Score=31.56 Aligned_cols=48 Identities=33% Similarity=0.424 Sum_probs=40.0
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 002292 472 HCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 519 (940)
Q Consensus 472 hC~gr~~~~~lC~el~e~~~~Lk~~L~~~~~~~~~~~~~~~a~~~l~r 519 (940)
|-.|+......-+||++|+..|+.|+...+.+--.+...+.|-++||+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealFk 59 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSASRAAAEALFK 59 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566677788999999999999999999988888888888888764
No 6
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=40.43 E-value=86 Score=34.56 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.5
Q ss_pred cccccccccccccccch-hHHHHHHHhHhhhccCCC
Q 002292 901 CTRDRKVDVEFDLTTIP-AFLIVLGILYVLLKPRRP 935 (940)
Q Consensus 901 C~k~~k~~~~~~~~~v~-~~~vv~~~l~~~lrprr~ 935 (940)
-.|+-..||.+=|+.++ +++||+.+-|+.||.-|.
T Consensus 190 ~vkkD~aDPSLiWvmistGg~IvltLTYVGwRKYkg 225 (233)
T TIGR02878 190 GVKEDEADPSLLWVMISTGGIIVATLTYVGWRKYKG 225 (233)
T ss_pred ccccCCCCcHHHHHHHHhhHHHHHHHhhhhhhhhhh
Confidence 33455678889999774 689999999999998654
No 7
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=39.45 E-value=14 Score=21.05 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=6.0
Q ss_pred CCCCccc
Q 002292 394 AGPFSWG 400 (940)
Q Consensus 394 AGPf~WG 400 (940)
|||+++|
T Consensus 1 agpy~fg 7 (8)
T PF08261_consen 1 AGPYSFG 7 (8)
T ss_pred CCccccc
Confidence 7999887
No 8
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=33.96 E-value=1.4e+02 Score=33.27 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=48.2
Q ss_pred hHhHHhhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002292 798 QSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLF----------QSQERELVNKYNYVVSLWRRISTVTGDLR 867 (940)
Q Consensus 798 q~Daa~RN~Ilt~L~~Si~~vnsai~~L~~~~t~ek~f~~~----------~s~~~e~v~r~n~v~~lwr~isa~s~~ld 867 (940)
-.|-++|-|+++.=+.+-..+..||. +-.|.+.|... +....|.-.|++.+++++++++.+. .|=
T Consensus 127 ~~e~~rrQy~Ia~P~ATEdeve~aIn----d~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~-qLf 201 (280)
T COG5074 127 EKEQARRQYIIAQPEATEDEVEAAIN----DVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELT-QLF 201 (280)
T ss_pred HHHHHHHhhhhcCCccchHHHHHHhc----ccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 35788999999988888887777764 33455555432 2334588899999999999999998 453
Q ss_pred HH
Q 002292 868 YA 869 (940)
Q Consensus 868 y~ 869 (940)
.+
T Consensus 202 nd 203 (280)
T COG5074 202 ND 203 (280)
T ss_pred HH
Confidence 33
No 9
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=33.32 E-value=26 Score=29.63 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.3
Q ss_pred cccchhHHHHHHHhHhhhccCCCC
Q 002292 913 LTTIPAFLIVLGILYVLLKPRRPK 936 (940)
Q Consensus 913 ~~~v~~~~vv~~~l~~~lrprr~k 936 (940)
|..+.++++++++++|++||++.|
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcch
Confidence 445556688888899999999754
No 10
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=32.08 E-value=2.6e+02 Score=28.30 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEEEEEeccccccCcccCcChhhHHHhhcccCCCCCccEEEEeeecccCCHHHHHHHHHHHHhcccceee--eCceEEE
Q 002292 575 SFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLL--VNGTYRK 652 (940)
Q Consensus 575 ~V~iiiI~d~~~~~~~~~~~D~e~Ik~el~~Lllp~Q~~~F~~~~~sL~e~~~LA~Afs~A~Rs~s~~~~~--~~g~y~~ 652 (940)
-..++++.++..|+++ ..|+--|=.++.+ -+++.+ +....+...+++.+|.-| +..+.|++. .+|++..
T Consensus 35 ~~~vl~~~gdp~r~~E--~~D~avvleELa~-e~~~~~--v~~akVDiD~~~~LA~~f----gV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 35 PDGVVLLSSDPKRTPE--VSDNPVMIGELLR-EFPDYT--WQVAIADLEQSEAIGDRF----GVFRFPATLVFTGGNYRG 105 (132)
T ss_pred CcEEEEeCCCCCcCCc--cccHHHHHHHHHH-HhcCCc--eEEEEEECCCCHHHHHHc----CCccCCEEEEEECCEEEE
Confidence 3578899999999999 6888888888765 335433 455678999999987765 444666554 5999999
Q ss_pred EEeeeecHHHHHHHHHhc
Q 002292 653 TVRSYVDSAILQYQLQRM 670 (940)
Q Consensus 653 ~~~~YLDSkeL~~~L~~~ 670 (940)
.+.-+.|-.+|..++++.
T Consensus 106 ~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 106 VLNGIHPWAELINLMRGL 123 (132)
T ss_pred EEeCcCCHHHHHHHHHHH
Confidence 998899999999998873
No 11
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.27 E-value=5.2e+02 Score=24.49 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=46.4
Q ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 002292 799 SDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQ 874 (940)
Q Consensus 799 ~Daa~RN~Ilt~L~~Si~~vnsai~~L~~~~t~ek~f~~~~s~~~e~v~r~n~v~~lwr~isa~s~~ldy~~Al~~ 874 (940)
.|...+..+...++.....++..+..+.....+.+. +..-.++...|+........+-.++...+.++|..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~ 143 (181)
T PF12729_consen 72 TDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEE----KQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAI 143 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355566777777778888888888888765444332 122335666677667666666666667788877653
No 12
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.03 E-value=2.9e+02 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHHHHH---HHHHHHHHhhcCCCHHHHHHHHHHHhhhhh
Q 002292 844 ELVNKYNYVV---SLWRRISTVTGDLRYADAMRQLYTLEDASK 883 (940)
Q Consensus 844 e~v~r~n~v~---~lwr~isa~s~~ldy~~Al~~l~~LE~~s~ 883 (940)
++.+..+.++ ....++-.+.+..||..|+.++...++...
T Consensus 116 ~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~ 158 (291)
T PF10475_consen 116 KLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE 158 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5555555555 455566666667799999998877777543
No 13
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=25.94 E-value=1.3e+02 Score=30.35 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=39.5
Q ss_pred CcccccccCCCcc-cccccccccChHHHHHHHHHHHHhhhhccCCCchhhHHHHHHHhhH
Q 002292 406 EGVRTELSLPNVG-KTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDI 464 (940)
Q Consensus 406 ~Gvr~~~sLP~v~-~~~g~~~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidv 464 (940)
-|..-...|++.+ ++|++-. -.+|-+...+.|...+..+++.+|.++|-+|.|||=
T Consensus 41 tG~~Ea~elrD~~~~~~~gkg---V~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDg 97 (132)
T PF03952_consen 41 TGSHEAVELRDGDPERYGGKG---VSKAVENVNEIIAPALIGLDPTDQEEIDQILIELDG 97 (132)
T ss_dssp SSSSS-B---B-STTSGGGTB---HHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHT
T ss_pred CCccccccccCCCcceecCcc---cchhhhhHHHHHHHHHHhcchhhHHHhCccceeccC
Confidence 3555555666666 6676655 367888888889998889999899999999999883
No 14
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=40 Score=30.05 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=21.5
Q ss_pred cccccchhHHHHHHHhHhhhccCCCC
Q 002292 911 FDLTTIPAFLIVLGILYVLLKPRRPK 936 (940)
Q Consensus 911 ~~~~~v~~~~vv~~~l~~~lrprr~k 936 (940)
..|+++-.++++++++|+++||++.+
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Confidence 45778888889999999999998754
No 15
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.40 E-value=28 Score=34.76 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHHHHHhHhhhccCCCCCCC
Q 002292 920 LIVLGILYVLLKPRRPKPKI 939 (940)
Q Consensus 920 ~vv~~~l~~~lrprr~kpki 939 (940)
+..+.+++|++|+||-|++.
T Consensus 78 Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 33444567888888887764
No 16
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.97 E-value=31 Score=38.90 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=18.7
Q ss_pred ccccchhHHHHHHHhHhhhccCCCC
Q 002292 912 DLTTIPAFLIVLGILYVLLKPRRPK 936 (940)
Q Consensus 912 ~~~~v~~~~vv~~~l~~~lrprr~k 936 (940)
...++...+||+.+||.||++||-+
T Consensus 264 aalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344466788888899999999863
No 17
>PTZ00370 STEVOR; Provisional
Probab=22.35 E-value=33 Score=38.79 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=18.2
Q ss_pred cccchhHHHHHHHhHhhhccCCCC
Q 002292 913 LTTIPAFLIVLGILYVLLKPRRPK 936 (940)
Q Consensus 913 ~~~v~~~~vv~~~l~~~lrprr~k 936 (940)
..++...+||+.+||.||++||-+
T Consensus 261 alvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344456788888899999999863
No 18
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=20.80 E-value=3.5e+02 Score=26.55 Aligned_cols=151 Identities=17% Similarity=0.284 Sum_probs=78.3
Q ss_pred hcccCchhhhcccceeeeEeeccceeEEEEecccCCCcccccChhHHHHHHhhhhccccccccCCCCccccccccccccc
Q 002292 78 YTRAGNIANYLKLMEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDK 157 (940)
Q Consensus 78 ~~~s~nia~yl~l~~v~sl~lpiPvnfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~~ge~lt~f~~~~~~~ 157 (940)
.+.++++++-+++.+ .+|.+-=|-.=-.+=+. |+ +++.++|.+|.+. .+.|.+++ +|+ ....+
T Consensus 27 ~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~--~~---~~~~~~l~~fI~~-------~~~P~v~~-~t~---~n~~~ 89 (184)
T PF13848_consen 27 VTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYD--GD---KFTPEELKKFIKK-------NSFPLVPE-LTP---ENFEK 89 (184)
T ss_dssp EEE-HHHHHHCTCSS-SEEEEEECTTTSEEEES--SS---TTSHHHHHHHHHH-------HSSTSCEE-EST---THHHH
T ss_pred EEcHHHHHHHhCCCC-CcEEEeccCCCCceecc--cc---cCCHHHHHHHHHH-------hccccccc-cch---hhHHH
Confidence 455677777777766 55554332000011111 22 6799999999874 34555444 555 34444
Q ss_pred ccccCCCceeeEEEeEEEEEEecChhHHHHHHHHHHHhcccCCCCCCCCCCcceeeecccchHHHHHHhhhhhccC--Cc
Q 002292 158 VQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLE--NA 235 (940)
Q Consensus 158 ~~~~~~P~~Shi~ynFs~hvi~~~~~V~~~fE~AI~~~~R~~d~~~~~~~~~~~~qvd~~~m~~l~sslv~~L~L~--~s 235 (940)
....+.|++-.+- ..-+..-..-+...+.-++++-. +.-..-.+|.+.. ..++.+||+. +-
T Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~a~~~~------~~~~f~~~d~~~~----~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 90 LFSSPKPPVLILF-------DNKDNESTEAFKKELQDIAKKFK------GKINFVYVDADDF----PRLLKYFGIDEDDL 152 (184)
T ss_dssp HHSTSSEEEEEEE-------ETTTHHHHHHHHHHHHHHHHCTT------TTSEEEEEETTTT----HHHHHHTTTTTSSS
T ss_pred HhcCCCceEEEEE-------EcCCchhHHHHHHHHHHHHHhcC------CeEEEEEeehHHh----HHHHHHcCCCCccC
Confidence 4444444221111 11133444455555555554331 1233457788844 4467788998 55
Q ss_pred eEEEEECCCCCCCCcccccccCCHHHHH
Q 002292 236 YNIFILNPKHEKRARYGYRRGLSDSEIT 263 (940)
Q Consensus 236 Y~i~ilNPk~~~~a~YGYR~G~S~~E~~ 263 (940)
=.|+|+|++... -.|-+.--++.+.|.
T Consensus 153 P~~vi~~~~~~~-~~~~~~~~~~~~~i~ 179 (184)
T PF13848_consen 153 PALVIFDSNKGK-YYYLPEGEITPESIE 179 (184)
T ss_dssp SEEEEEETTTSE-EEE--SSCGCHHHHH
T ss_pred CEEEEEECCCCc-EEcCCCCCCCHHHHH
Confidence 688889988732 233344445554443
No 19
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=20.16 E-value=90 Score=28.71 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=13.4
Q ss_pred CcccCCCceeeeccc
Q 002292 32 SRKSGRSSVFSLFNL 46 (940)
Q Consensus 32 ~~~~~~~~~~~~~~~ 46 (940)
.|+.|.-|++|.||=
T Consensus 38 ~r~~ge~SAYSVFN~ 52 (71)
T PF10260_consen 38 PRKPGELSAYSVFNK 52 (71)
T ss_pred CCCCCCccchhhhCC
Confidence 688899999999994
Done!