Query 002292
Match_columns 940
No_of_seqs 69 out of 71
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 20:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2le2_A P56; UDG inhibition, DN 45.7 9.5 0.00033 31.5 2.0 36 234-269 8-43 (56)
2 2ks1_B Epidermal growth factor 36.0 21 0.0007 28.8 2.5 18 921-938 26-43 (44)
3 2l2t_A Receptor tyrosine-prote 32.3 25 0.00087 28.4 2.4 18 921-938 25-42 (44)
4 2b3g_B Cellular tumor antigen 24.4 35 0.0012 24.8 1.8 16 115-130 9-24 (28)
5 3twe_A Alpha4H; unknown functi 21.4 54 0.0018 23.6 2.2 17 483-499 10-26 (27)
6 2v4h_A NF-kappa-B essential mo 19.4 1E+02 0.0035 29.2 4.3 41 453-500 62-102 (110)
7 3gcz_A Polyprotein; flavivirus 14.8 90 0.0031 33.7 3.1 55 479-544 23-78 (282)
8 3evf_A RNA-directed RNA polyme 12.8 81 0.0028 33.9 2.1 68 480-562 7-75 (277)
9 2lxi_A RNA-binding protein 10; 12.0 2E+02 0.007 24.4 4.1 35 103-142 2-36 (91)
10 3jsv_C NF-kappa-B essential mo 11.6 2.2E+02 0.0075 26.4 4.2 52 452-503 39-90 (94)
No 1
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=45.68 E-value=9.5 Score=31.53 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=32.4
Q ss_pred CceEEEEECCCCCCCCcccccccCCHHHHHHhhhch
Q 002292 234 NAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENK 269 (940)
Q Consensus 234 ~sY~i~ilNPk~~~~a~YGYR~G~S~~E~~~l~~n~ 269 (940)
+||++-.|=-..++...|-|-.|+|-|..+.||+|.
T Consensus 8 dsy~~t~ll~dddg~q~~e~h~glslsdfev~ygn~ 43 (56)
T 2le2_A 8 DSYDVTMLLQDDDGKQYYEYHKGLSLSDFEVLYGNT 43 (56)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEEECHHHHHHHHHHS
T ss_pred cceeEEEEEEcCCCceeeeeecCcccccEEEEeCCC
Confidence 899998887777777899999999999999999985
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.00 E-value=21 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.9
Q ss_pred HHHHHhHhhhccCCCCCC
Q 002292 921 IVLGILYVLLKPRRPKPK 938 (940)
Q Consensus 921 vv~~~l~~~lrprr~kpk 938 (940)
+++++.|+++|.||-|-|
T Consensus 26 ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHhhhhHhhcc
Confidence 334446788888877766
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.33 E-value=25 Score=28.36 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=11.6
Q ss_pred HHHHHhHhhhccCCCCCC
Q 002292 921 IVLGILYVLLKPRRPKPK 938 (940)
Q Consensus 921 vv~~~l~~~lrprr~kpk 938 (940)
+++++.|+++|.||-|-|
T Consensus 25 ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhhhhhhhhc
Confidence 344446778888877655
No 4
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=24.41 E-value=35 Score=24.84 Aligned_cols=16 Identities=44% Similarity=1.132 Sum_probs=13.7
Q ss_pred cccccChhHHHHHHhh
Q 002292 115 QDFQLHPDELERWFLK 130 (940)
Q Consensus 115 ~~~~l~~~el~~WF~~ 130 (940)
.++-|++++++.||+.
T Consensus 9 ddlmlspddi~qw~s~ 24 (28)
T 2b3g_B 9 DDLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGGGCCHHHHHHHHHC
T ss_pred HhhhcChHHHHHHhhc
Confidence 4677999999999974
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.37 E-value=54 Score=23.58 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhcc
Q 002292 483 CEELDERMQDLKNELQS 499 (940)
Q Consensus 483 C~el~e~~~~Lk~~L~~ 499 (940)
-|+|+||.+.|++.|.+
T Consensus 10 ledlqerlrklrkklrs 26 (27)
T 3twe_A 10 LEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 37889999999887754
No 6
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=19.37 E-value=1e+02 Score=29.22 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=24.5
Q ss_pred hhHHHHHHHhhHHHHHHhhccCccchhhhhhHHHHHHHHHHHHhhccc
Q 002292 453 QAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSF 500 (940)
Q Consensus 453 ~a~dillaEidvye~fa~khC~gr~~~~~lC~el~e~~~~Lk~~L~~~ 500 (940)
..|.+|.|.+|||..=-. ..| +-=|.+.+++.+|+.+|..+
T Consensus 62 E~I~vLkaQv~IY~~DF~---aER----adREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQ---AER----HAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp THHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---cch----hhHHHHHhHHHHHHHHHHHH
Confidence 358899999999975211 122 22345556666666555543
No 7
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=14.81 E-value=90 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred hhhhhHHHHHHHHHH-HHhhccccCCccchhhHHHHHHHHHhhhcccccCCcccccchhhhhHHhHH
Q 002292 479 KLALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFL 544 (940)
Q Consensus 479 ~~~lC~el~e~~~~L-k~~L~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~t~a~d~Fl 544 (940)
-.-|=+-||++++.| |.++..|+..++-|-.++.|-++|++=+.- ++| ++|.+|.
T Consensus 23 ~~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~~----------g~Y-rSRAAfK 78 (282)
T 3gcz_A 23 GMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRTHARDSLENGIQN----------GIA-VSRGSAK 78 (282)
T ss_dssp -CCHHHHHHHHHHHCCHHHHHHHHTTTCEEECCHHHHHHHHHTCCS----------SBC-SSTHHHH
T ss_pred CCcHHHHHHHHHHhhhHHHHHhhhhhceeeccHHHHHHHHhcCCcC----------CCE-ecHHHHH
Confidence 455788999999999 999999999999999999999999886431 344 5788774
No 8
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=12.83 E-value=81 Score=33.93 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHH-HHhhccccCCccchhhHHHHHHHHHhhhcccccCCcccccchhhhhHHhHHHHHHHHHHhhhccc
Q 002292 480 LALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHV 558 (940)
Q Consensus 480 ~~lC~el~e~~~~L-k~~L~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~t~a~d~Fla~LaSll~sA~rhL 558 (940)
.-|=+-||++++.| |.++..|+..++-|-.++.|-++|++=+. .-++| .+|.+| .|--+.-. ++
T Consensus 7 ~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~---------~~~~Y-rSRaA~--KL~ei~ek---~~ 71 (277)
T 3evf_A 7 KTLGEVWKRELNLLDKRQFELYKRTDIVEVDRDTARRHLAEGKV---------DTGVA-VSRGTA--KLRWFHER---GY 71 (277)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHTSSEEEECCHHHHHHHHTTCC---------SSCBC-SSTHHH--HHHHHHHT---TS
T ss_pred ccHHHHHHHHHHhhhHHHHHhhhhhccccccHHHHHHHHhcCCc---------cCCCc-cccHHH--HHHHHHHh---CC
Confidence 34678899999999 99999999999999999999999988543 12444 578877 34444433 45
Q ss_pred cccc
Q 002292 559 ISPS 562 (940)
Q Consensus 559 IAPs 562 (940)
+-|.
T Consensus 72 l~~~ 75 (277)
T 3evf_A 72 VKLE 75 (277)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=11.98 E-value=2e+02 Score=24.44 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=27.6
Q ss_pred eEEEEecccCCCcccccChhHHHHHHhhhhccccccccCC
Q 002292 103 NFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPP 142 (940)
Q Consensus 103 nfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~ 142 (940)
|.|||| |.....++++|.+-|+..--.+.+++|++
T Consensus 2 ~~i~v~-----nLp~~~te~~l~~~F~~~G~~v~~v~i~~ 36 (91)
T 2lxi_A 2 NIVMLR-----MLPQAATEDDIRGQLQSHGVQAREVRLMR 36 (91)
T ss_dssp CEEEEE-----TCCSSCCHHHHHHHHHHHTCCCSBCCSSS
T ss_pred CEEEEe-----CCCCCCCHHHHHHHHHHhCCEeEEEEEEe
Confidence 567774 89999999999999998764456677753
No 10
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=11.60 E-value=2.2e+02 Score=26.36 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhhHHHHHHhhccCccchhhhhhHHHHHHHHHHHHhhccccCC
Q 002292 452 HQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGE 503 (940)
Q Consensus 452 ~~a~dillaEidvye~fa~khC~gr~~~~~lC~el~e~~~~Lk~~L~~~~~~ 503 (940)
...|++|.+.+|||+.=-..-=-.|..--.==++|.+...-|..+++.++.+
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3569999999999976321111111100111256667777777776666653
Done!