Query 002292
Match_columns 940
No_of_seqs 69 out of 71
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 20:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hoxa1 c.67.1.1 (A:1-425) All 22.1 32 0.0024 35.6 4.5 62 178-247 126-209 (425)
2 d2outa2 d.344.1.1 (A:4-70) Mu- 17.6 33 0.0024 27.4 2.5 35 233-272 2-49 (67)
3 d2fjla1 b.55.1.1 (A:1-37,A:87- 12.2 63 0.0046 25.6 3.0 28 107-134 67-97 (101)
4 d1c7na_ c.67.1.3 (A:) Cystalys 11.8 1.6E+02 0.012 28.6 6.7 77 178-267 92-191 (394)
5 d2d2sa1 a.118.17.2 (A:525-753) 10.9 4.9E+02 0.036 23.9 9.6 62 485-559 63-124 (229)
6 d2gena2 a.121.1.1 (A:76-193) P 10.5 3E+02 0.022 21.8 6.9 106 432-556 3-116 (118)
7 d1bupa2 c.55.1.1 (A:189-381) H 10.1 2.1E+02 0.015 25.4 6.2 34 598-639 157-190 (193)
8 d1w6ta2 d.54.1.1 (A:1-137) Eno 9.8 2E+02 0.015 25.6 5.8 61 401-464 38-99 (137)
9 d1iruj_ d.153.1.4 (J:) Proteas 9.4 2E+02 0.015 25.8 5.8 115 309-442 54-172 (204)
10 d2cqca1 d.58.7.1 (A:109-191) A 9.0 92 0.0067 24.2 2.9 29 99-132 6-34 (83)
No 1
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}
Probab=22.06 E-value=32 Score=35.65 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.9
Q ss_pred EecChhHHHHHHHHHHHhcccCCCC-----------CC-----------CCCCcceeeecccchHHHHHHhhhhhccCCc
Q 002292 178 IQMGEKVTSVFEHAIKVLARKDDVS-----------TN-----------RDDVDALWQVDVSMMDVLFTSLVDYLQLENA 235 (940)
Q Consensus 178 i~~~~~V~~~fE~AI~~~~R~~d~~-----------~~-----------~~~~~~~~qvd~~~m~~l~sslv~~L~L~~s 235 (940)
|-+|.+.++++.-||..|+.+.+.. .| -+..+..|+.|++.+.... =++.
T Consensus 126 IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~--------~~~~ 197 (425)
T d2hoxa1 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVS--------NPEQ 197 (425)
T ss_dssp EEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCS--------CGGG
T ss_pred EEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCCCHHHHHhhC--------CCCc
Confidence 6789999999999999998654321 11 2224567999988653321 1378
Q ss_pred eEEEEECCCCCC
Q 002292 236 YNIFILNPKHEK 247 (940)
Q Consensus 236 Y~i~ilNPk~~~ 247 (940)
+-++|-|||+.+
T Consensus 198 ~ii~l~sPnNPt 209 (425)
T d2hoxa1 198 YIEMVTSPNNPE 209 (425)
T ss_dssp EEEEEESSCTTT
T ss_pred eEEEEECCCCCC
Confidence 889999999943
No 2
>d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]}
Probab=17.62 E-value=33 Score=27.38 Aligned_cols=35 Identities=31% Similarity=0.640 Sum_probs=24.5
Q ss_pred CCceEEEEECCCCCCCCcccccc-cC------------CHHHHHHhhhchHHh
Q 002292 233 ENAYNIFILNPKHEKRARYGYRR-GL------------SDSEITFLKENKDLQ 272 (940)
Q Consensus 233 ~~sY~i~ilNPk~~~~a~YGYR~-G~------------S~~E~~~l~~n~~l~ 272 (940)
++-|-++|-|- .+=|||+ || |++.|++||...-|-
T Consensus 2 dk~~~VvVqNr-----iKdGYRRAGfSlhkGdN~l~~vse~QiaqLKaDpRLV 49 (67)
T d2outa2 2 DKTFCVVVQNR-----IKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLV 49 (67)
T ss_dssp SCCBCEEEECC-----SCSCCCCSSSCCCSSEEECCCBSSHHHHHHHSSTTSC
T ss_pred CceEEEEEEee-----cchhhhhcCeeeeeCchHhhhccHHHHHHhcCCCeEE
Confidence 57788999883 5668873 44 577777777765553
No 3
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.21 E-value=63 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=22.4
Q ss_pred EecccCCCccccc---ChhHHHHHHhhhhcc
Q 002292 107 IGFEGNGNQDFQL---HPDELERWFLKIDHI 134 (940)
Q Consensus 107 iGF~G~Gn~~~~l---~~~el~~WF~~idH~ 134 (940)
|-..+.|++-+-| +++|+++|++.|-.+
T Consensus 67 i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~ 97 (101)
T d2fjla1 67 ISMPSVAQWSLDVAADSQEELQDWVKKIREV 97 (101)
T ss_dssp EECTTTSSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred EeccccccEEEEEEeCCHHHHHHHHHHHHHH
Confidence 5566667777777 999999999998655
No 4
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=11.81 E-value=1.6e+02 Score=28.64 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=53.5
Q ss_pred EecChhHHHHHHHHHHHhcccCCCC-----------------------CCCCCCcceeeecccchHHHHHHhhhhhccCC
Q 002292 178 IQMGEKVTSVFEHAIKVLARKDDVS-----------------------TNRDDVDALWQVDVSMMDVLFTSLVDYLQLEN 234 (940)
Q Consensus 178 i~~~~~V~~~fE~AI~~~~R~~d~~-----------------------~~~~~~~~~~qvd~~~m~~l~sslv~~L~L~~ 234 (940)
|-++.+.++.+.-|+..+.++.|.. .+....+..|+.|...++.+.. -.+
T Consensus 92 I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~-------~~~ 164 (394)
T d1c7na_ 92 IINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-------DKN 164 (394)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT-------CTT
T ss_pred eEeeccchhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhc-------ccc
Confidence 4557789999999999999998821 1123356778888877766542 124
Q ss_pred ceEEEEECCCCCCCCcccccccCCHHHHHHhhh
Q 002292 235 AYNIFILNPKHEKRARYGYRRGLSDSEITFLKE 267 (940)
Q Consensus 235 sY~i~ilNPk~~~~a~YGYR~G~S~~E~~~l~~ 267 (940)
.=-|+|-||++.+... +|.+|++.|-+
T Consensus 165 ~~~i~l~~P~NPTG~v------~s~~~l~~l~~ 191 (394)
T d1c7na_ 165 NKALLFCSPHNPVGRV------WKKDELQKIKD 191 (394)
T ss_dssp EEEEEEESSBTTTTBC------CCHHHHHHHHH
T ss_pred ceEEEeccccccccee------ccHHHhhhhhc
Confidence 4567888998866454 58888887755
No 5
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.90 E-value=4.9e+02 Score=23.94 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhccccCCccchhhHHHHHHHHHhhhcccccCCcccccchhhhhHHhHHHHHHHHHHhhhcccc
Q 002292 485 ELDERMQDLKNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVI 559 (940)
Q Consensus 485 el~e~~~~Lk~~L~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~t~a~d~Fla~LaSll~sA~rhLI 559 (940)
.+++|...|..+|..--........=++|+..|.|+.. .+-|+..|+.--++.+.+.++++.
T Consensus 63 kv~~r~~~L~~~L~~~l~~~~~~~~~~~~v~~L~rLg~-------------~~~A~~lfL~~rs~~l~~~i~~~~ 124 (229)
T d2d2sa1 63 KIEQRREAISSKLSQSILSSNEIVHLKSGTENMIKLGL-------------PEQALDLFLQNRSNFIQDLILQIG 124 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-------------chHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566666666665422223334455789999999843 234899999999999999999884
No 6
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.45 E-value=3e+02 Score=21.80 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhhccCCCchhhHHHHHHHhhHHHHHHhhccCccchhhhhhHHHHHH----HHHHHHhhccccCCccch
Q 002292 432 AEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDER----MQDLKNELQSFEGEEYDE 507 (940)
Q Consensus 432 a~e~lq~~~~~~~~~~~~k~~~a~dillaEidvye~fa~khC~gr~~~~~lC~el~e~----~~~Lk~~L~~~~~~~~~~ 507 (940)
++|.+...+..-+.-+++ +.+..-+++.+ +.-...-. .-.-|.+..++ +.++-.+- ...|...+
T Consensus 3 ~~e~lr~~v~~~~~~v~~-~p~~~r~l~~~----~~~~~~~~-----~~~~~~~~~~~~~~~i~~~i~~g--~~~G~~r~ 70 (118)
T d2gena2 3 AEETVRLLVTSYIDWVVA-NPDWARFILHS----RGRVEAGE-----LGERLRADNQAHFARIHAALAGY--RAEGLFRE 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHHH----HHHHHHST-----THHHHHHHHHHHHHHHHHHHHHH--HHTTCBCC
T ss_pred HHHHHHHHHHHHHHHHHh-ChHHHHHHHHH----hhcccCcc-----HHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCc
Confidence 567777777776666655 34444444321 01111111 11123333333 22222221 23344444
Q ss_pred hhHHHHHHH----HHhhhcccccCCcccccchhhhhHHhHHHHHHHHHHhhhc
Q 002292 508 NHKRKAIEA----LRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMR 556 (940)
Q Consensus 508 ~~~~~a~~~----l~r~e~w~lfg~~~e~~~n~t~a~d~Fla~LaSll~sA~r 556 (940)
....-+... ...+-.|-+.|+.+ ...+.....|.-++|.++|
T Consensus 71 ~~~~~~~~~i~G~~~~~~~~wl~~~~~-------~~~e~~~e~l~~~~w~~lr 116 (118)
T d2gena2 71 MPDDCFASVVIGPAHDLARQWLAGRTR-------VALADCRELLAQVAWDSVR 116 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCS-------SCGGGGHHHHHHHHHHHHB
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCC-------CCHHHHHHHHHHHHHHHHh
Confidence 333333333 36677777777655 3467788899999999987
No 7
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.14 E-value=2.1e+02 Score=25.36 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=21.6
Q ss_pred hHHHhhcccCCCCCccEEEEeeecccCCHHHHHHHHHHHHhc
Q 002292 598 SLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAA 639 (940)
Q Consensus 598 ~Ik~el~~Lllp~Q~~~F~~~~~sL~e~~~LA~Afs~A~Rs~ 639 (940)
.+++.+++ .++++++ .-..+|..|.|.=.|+.++
T Consensus 157 ~v~~~i~~-~f~~~~i-------~~~~~p~~aVa~GaA~~aa 190 (193)
T d1bupa2 157 KIQKLLQD-FFNGKEL-------NKSINPDEAVAYGAAVQAA 190 (193)
T ss_dssp HHHHHHHH-HTTTCCC-------BCSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCCC-------CCCCChHHHHHHHHHHHHH
Confidence 47777776 4565543 3345787777777776654
No 8
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=9.81 E-value=2e+02 Score=25.60 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=43.8
Q ss_pred ccccCCcccccccCCCccc-ccccccccChHHHHHHHHHHHHhhhhccCCCchhhHHHHHHHhhH
Q 002292 401 PAVGGEGVRTELSLPNVGK-TIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDI 464 (940)
Q Consensus 401 PavGG~Gvr~~~sLP~v~~-~~g~~~~ise~~a~e~lq~~~~~~~~~~~~k~~~a~dillaEidv 464 (940)
|+.---|-.-...|++.++ +|++... .+|.+...+.|....-.++..+|.++|-++.|+|=
T Consensus 38 PSGAStG~~Ea~elrD~~~~~~~Gkgv---~~Av~~in~~i~~~L~G~d~~dq~~iD~~lielDg 99 (137)
T d1w6ta2 38 PSGASTGEHEAVELRDGDKSRYGGLGT---QKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDG 99 (137)
T ss_dssp CCC---CCSSCCCCCCCCTTSGGGTCC---HHHHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHC
T ss_pred CcCCCcccccceeccCCccccccCCcH---HHHHHHHHHHhHHHHcCCccccHHHHHHHHHHhcC
Confidence 4444456666678888764 4655443 67788888888888888888889999999999773
No 9
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.37 E-value=2e+02 Score=25.81 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=68.7
Q ss_pred CCCcchhHHHHHHhccccchhhhhcCCCchhhHHHHHHHHhcCCchhHHHHHHHhhhcCCCCCccccccccccccc--c-
Q 002292 309 AEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGN--N- 385 (940)
Q Consensus 309 ~~~~~~~~W~~~~~~~~~~~e~~~~~k~~~~~i~~~a~~lL~g~~~~~~~~l~~~l~~~d~~~~~~~CL~dtWig~--~- 385 (940)
+..-|.-.|.+.....++..+..+...-+.+ .+..+|...+......+....|++=-|-.. +
T Consensus 54 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~ 118 (204)
T d1iruj_ 54 GLATDVQTVAQRLKFRLNLYELKEGRQIKPY---------------TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKP 118 (204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH---------------HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCE
T ss_pred cCchHHHHHHHHHHHhhhhhhhhcccccchH---------------HHHHHHHHHHHHhhhccceeEEEEEEEcCCCCce
Confidence 3344677777766655555554443322322 223344445555556778888888777432 2
Q ss_pred ceEEEEcCCCCCcccc-cccCCcccccccCCCcccccccccccChHHHHHHHHHHHHh
Q 002292 386 RWAFIDLTAGPFSWGP-AVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQE 442 (940)
Q Consensus 386 R~afIDLtAGPf~WGP-avGG~Gvr~~~sLP~v~~~~g~~~~ise~~a~e~lq~~~~~ 442 (940)
.+..+|-+.|++.|.+ +.+|.|-.. .+|-.++.+- ..+|.|||.+-.-+++..
T Consensus 119 ~~~~~d~~g~~~~~~~~~~~G~g~~~--~~~~l~~~~~--~~ms~~ea~~l~~~al~~ 172 (204)
T d1iruj_ 119 FICSLDLIGCPMVTDDFVVSGTCAEQ--MYGMCESLWE--PNMDPDHLFETISQAMLN 172 (204)
T ss_dssp EEEEECTTCCEEECSSEEEEETTHHH--HHHHHHHHCC--SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCceeeecceEEechhHHH--HHHHHHhccc--cCCCHHHHHHHHHHHHHH
Confidence 4577899999999998 888888442 2222332222 246888888776666644
No 10
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.05 E-value=92 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.4
Q ss_pred ccceeEEEEecccCCCcccccChhHHHHHHhhhh
Q 002292 99 PVPVNFIFIGFEGNGNQDFQLHPDELERWFLKID 132 (940)
Q Consensus 99 piPvnfifiGF~G~Gn~~~~l~~~el~~WF~~id 132 (940)
|-|-+.|||| |.....++++|.+.|++.-
T Consensus 6 p~~~~~l~V~-----nL~~~~te~~l~~~F~~~G 34 (83)
T d2cqca1 6 PDPNCCLGVF-----GLSLYTTERDLREVFSKYG 34 (83)
T ss_dssp CCGGGCEEEE-----SCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEe-----CCCCCCCHHHHHHHHHHhC
Confidence 4566778885 8999999999999998764
Done!