Your job contains 1 sequence.
>002293
MMSSSFPRFYSSFNNARRFPIKKYAYRLSVGASSAKMVPFCQDLNSFEGNYSSKGTFDLP
KIDEKREKLHGKQFLEVASFYRPNPSNFSNETFSAKNTIHSSRGWMTETTRLHVMKEVES
CQTNTESSRDEKEDAKAQDRKRAAISTVINILESKHNRSLTSSKTECLQDSSFYSPIMSS
KPHFFQKFEQQKKPIFKGLADLRNGAVGGHPKNHPGSVMAVTKQVTGSEEKSEDFVNDQI
PLDKMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIECFEDGSSYTPPPKLVSF
KRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWM
LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGG
GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG
GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST
IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE
YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS
DTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP
TEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFA
TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSAR
RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD
FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKNK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002293
(940 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036361 - symbol:POLGAMMA2 "polymerase gamma 2... 2078 4.6e-215 1
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 842 2.8e-124 3
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 239 1.4e-20 4
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 222 1.6e-19 3
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 219 4.4e-19 3
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 223 7.1e-19 2
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 213 2.5e-18 3
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 209 1.8e-16 3
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 209 1.8e-16 3
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 210 4.1e-16 2
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 207 2.6e-15 3
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 209 6.6e-14 2
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 198 5.1e-13 3
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 200 9.0e-13 3
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 223 1.9e-12 3
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 204 2.0e-12 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 192 2.1e-11 3
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 192 2.1e-11 3
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 198 2.3e-11 3
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 179 3.4e-11 3
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 174 4.1e-09 3
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 162 4.2e-08 2
GENEDB_PFALCIPARUM|PF14_0112 - symbol:PF14_0112 "POM1, pu... 154 1.1e-06 3
UNIPROTKB|Q8ILY1 - symbol:POM1 "Pfprex" species:36329 "Pl... 154 1.1e-06 3
DICTYBASE|DDB_G0274419 - symbol:DDB_G0274419 species:4468... 106 7.8e-05 2
DICTYBASE|DDB_G0282679 - symbol:DDB_G0282679 "DNA polymer... 113 0.00026 3
UNIPROTKB|F1PCT5 - symbol:POLN "Uncharacterized protein" ... 106 0.00073 2
UNIPROTKB|H0YA88 - symbol:POLN "DNA polymerase nu" specie... 102 0.00086 2
>TAIR|locus:2036361 [details] [associations]
symbol:POLGAMMA2 "polymerase gamma 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0006264
"mitochondrial DNA replication" evidence=IMP] [GO:0033259 "plastid
DNA replication" evidence=IMP] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002562 InterPro:IPR012337
Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868 SMART:SM00474
SMART:SM00482 EMBL:CP002684 GO:GO:0005739 GO:GO:0009507
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0006264 KO:K02335 IPI:IPI00545616 RefSeq:NP_175498.2
UniGene:At.28263 UniGene:At.65769 ProteinModelPortal:F4I6M1
SMR:F4I6M1 PRIDE:F4I6M1 EnsemblPlants:AT1G50840.1 GeneID:841506
KEGG:ath:AT1G50840 OMA:ISMKTIF GO:GO:0033259 Uniprot:F4I6M1
Length = 1050
Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
Identities = 412/671 (61%), Positives = 488/671 (72%)
Query: 288 GSSYTPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV 347
G + PK +R + + A G S+ E S + +R L Y V++
Sbjct: 209 GDNMDVNPKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLI 268
Query: 348 VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGN 407
VDNV AAK V L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGN
Sbjct: 269 VDNVQAAKDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGN 328
Query: 408 GKSCIWVXXXXXXXXXXXNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
GKSCIWV EF P+FED I+KVWHNYSFD+H++ N+G+++SGFHADTMH
Sbjct: 329 GKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMH 388
Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
MARLWDS+RR +GGYSLEALT D KV+ + + + F+GKISMK IFG+R
Sbjct: 389 MARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKR 439
Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTXXXXXXXXXXXXXXXXXXDGK 587
KLKKDGS GKI I PVEELQRE+RE WISYSA D+I+T DGK
Sbjct: 440 KLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGK 499
Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS 647
PV G++M DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WAS
Sbjct: 500 PVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWAS 559
Query: 648 KHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
K+CPDAKYMN+GSDTQLRQL FGG NS D E LP+E++FKVPN + VI EGKKTP+KF
Sbjct: 560 KYCPDAKYMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKF 617
Query: 708 RNITLRSIGVD-LPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL-------DD 759
RNI L I L TE +TA+GWPSVGGD LK LA +SAEYD +D D+ DD
Sbjct: 618 RNIKLHRISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDD 677
Query: 760 SGCTEETEYK--------GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILP 811
T ET+ A + F + +EAC AI++LCEVCSIDSLISNFILP
Sbjct: 678 DVETSETQKSKTDDETDTSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILP 737
Query: 812 LQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
LQGSNVSGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+V
Sbjct: 738 LQGSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVV 797
Query: 872 ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---G 928
ADYGQLELRILAHL CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH G
Sbjct: 798 ADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPG 857
Query: 929 EDKPPVPLLKN 939
EDKPPVPLLK+
Sbjct: 858 EDKPPVPLLKD 868
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 842 (301.5 bits), Expect = 2.8e-124, Sum P(3) = 2.8e-124
Identities = 173/349 (49%), Positives = 228/349 (65%)
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
G +M+DFY W+PFG +L +ME G+ VD +YL +E+ A + E F WA H
Sbjct: 853 GTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTDMEENRKVFLNWAKTHS 912
Query: 651 PDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNI 710
PDA+ MN SD Q++QL F N K ESLP+E+ F+ N +G I GK P K +
Sbjct: 913 PDAENMNPVSDAQIQQLFFAPVQNKKT-KESLPLEKDFECDNLDGTIEVGKTKPKKKKTF 971
Query: 711 TLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKG 770
LR IG++ ++ T GWPSV +L+ LA + +DG + S + K
Sbjct: 972 YLRGIGME--SKSLTTNGWPSVDSSSLRELAGK-----NPIDGKYG---SAYDFFVKSKN 1021
Query: 771 AVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI 830
+ I EQ REA AI+AL E+ SI +L++ FI+PLQ ++ N R+H S+N+
Sbjct: 1022 ECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQ--KLADSNSRLHTSINV 1079
Query: 831 NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
NTETGRLS+++PNLQNQPALEKDRYKIR+AF PGN+LIVADYGQLELR+LAH+ NCKS
Sbjct: 1080 NTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKS 1139
Query: 891 MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKN 939
M+ AF+ GGDFHSRTAM MYPH++ A++ G+VLLEW GE +PP PLLKN
Sbjct: 1140 MITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPKPLLKN 1188
Score = 444 (161.4 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 114/318 (35%), Positives = 162/318 (50%)
Query: 517 KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTXXXXXXXX 574
K+ +KD+FG RK+K DG GK I P+E +QR+ + + WI YS+ DS T
Sbjct: 783 KVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLDSELTWLLRENIH 842
Query: 575 XXXXXXXXXXDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
D + G +M+DFY W+PFG +L +ME G+ VD +YL +E+ A +
Sbjct: 843 IKLR------DMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTD 896
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
E F WA H PDA+ MN SD Q++QL F N K ESLP+E+ F+ N +
Sbjct: 897 MEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKT-KESLPLEKDFECDNLD 955
Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
G I GK P K + LR IG++ ++ T GWPSV +L+ LA + +DG
Sbjct: 956 GTIEVGKTKPKKKKTFYLRGIGME--SKSLTTNGWPSVDSSSLRELAGK-----NPIDGK 1008
Query: 755 HDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQG 814
+ S + K + I EQ REA AI+AL E+ SI +L++ FI+PLQ
Sbjct: 1009 YG---SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQK 1065
Query: 815 SNVSGKNGRVHCSLNINT 832
S ++N T
Sbjct: 1066 LADSNSRLHTSINVNTET 1083
Score = 392 (143.0 bits), Expect = 2.8e-124, Sum P(3) = 2.8e-124
Identities = 96/268 (35%), Positives = 146/268 (54%)
Query: 236 VNDQIPLDKMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIE----CFEDGSSY 291
+ND + ++ N++ ++Y K + K L N + ++S +E F D
Sbjct: 533 LNDNVSIN--LNLDDIKY-KPI---DRTKFYNFLDKYNFTSIKSS-VEKLNKLFSDNQEI 585
Query: 292 TPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNV 351
T + + + K + +N K E N E++ L+ K NV +V +V
Sbjct: 586 TTSTSTTNLETIKKNYSKVEFNYIDDENIKFDEISN-EEINQLKPK------NVTMVRDV 638
Query: 352 SAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC 411
A+ VV +L K K HACDTEV ID+K+ +P+ HG++ICFSIY GP+ F +G S
Sbjct: 639 ETARMVVSILM-KQKDRFHACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQVKFHDGNSR 697
Query: 412 IWVXXXXXXXXXXXNE-FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
+WV + F +FED SI KVWHNY+FD H+ N+G+ V GF DT+HMAR
Sbjct: 698 VWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFGGDTLHMAR 757
Query: 471 LWDSSRRTEGGYSLEALTGDRKVMSEDK 498
LW++SR GGYSLEAL+ ++++++ K
Sbjct: 758 LWNASRMNSGGYSLEALS--KELLNKPK 783
Score = 46 (21.3 bits), Expect = 2.8e-124, Sum P(3) = 2.8e-124
Identities = 12/67 (17%), Positives = 32/67 (47%)
Query: 84 NPSNFSNETFSAKNTIHSSRGWMTETTRLHVMKEVESCQTNTESSRDEKEDAKAQDRKRA 143
N N+ +TF+ N H R + + +++ ++ S +++ SS + ++K +
Sbjct: 173 NSYNYGQDTFNTNN--HHHRHSIEQMNFENIVNQITSSSSSSSSS---SKTINVNNKKDS 227
Query: 144 AISTVIN 150
++ + N
Sbjct: 228 ILNNIEN 234
Score = 40 (19.1 bits), Expect = 1.2e-84, Sum P(2) = 1.2e-84
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 303 SNQKNPKNDAAEGTGQNKKASENENSEKLE 332
+N N N++ + ++ N NS+ ++
Sbjct: 56 NNNSNNSNNSNNNNNNSNNSNNNNNSDDIK 85
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 239 (89.2 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 53/111 (47%), Positives = 71/111 (63%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ + ++ K GRVH S + +TGRLS+ PNLQN P ++ KIRQ
Sbjct: 631 LSKLRSTYTEALQAA-INKKTGRVHTSYMMAGAQTGRLSSTDPNLQNIPVRTEEGRKIRQ 689
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA GN L+ ADY Q+ELRILAH+A+ ++ AFK G D H+ TA M+
Sbjct: 690 AFIAEEGNVLVSADYSQIELRILAHMADIPALKQAFKDGLDIHAMTASEMF 740
Score = 84 (34.6 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
Y+ +P G +L +ME G+ VDR+ LS + A Q A A H + N
Sbjct: 523 YETLDRPLGPVLAEMEQAGVKVDRDMLSRLS--ADFNQRMAALE----AEAHEQAGRSFN 576
Query: 658 VGSDTQLRQLLF 669
+GS QL ++LF
Sbjct: 577 IGSPKQLGEILF 588
Score = 54 (24.1 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
P EDP++ K+ N +D V + + V DTM
Sbjct: 406 PMLEDPAVLKIGQNIKYDLSVFAQHKIHVHPID-DTM 441
Score = 45 (20.9 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 229 EEKSEDFVNDQIPLDKMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIECFED 287
EE + + ++ + + ME + V E E +GA P F S C D
Sbjct: 265 EELAVQDPDPKVLIGFLEEMEFRTITRRVREQMELEGAIEAPAPEAQPFDVSAYACIRD 323
Score = 40 (19.1 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 658 VGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK 706
+G D + + FG P D +SL + + VP G+ G KT ++
Sbjct: 168 LGRDDVIEK--FGVGPEGVVDVQSLSGDSVDNVPGAPGI---GIKTAAQ 211
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 222 (83.2 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 637 LSKLKSTYTDALQ-THINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRE 695
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PGN L+ DY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 696 AFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMF 746
Score = 79 (32.9 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 30/94 (31%), Positives = 44/94 (46%)
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
Y+ +P +L +ME G+ VDRE LS + A A++ A + A H + N
Sbjct: 530 YETLERPLVPVLAEMEMHGVKVDREVLSRMSN-AFAQKMAGLE-----AEIHELAGEPFN 583
Query: 658 VGSDTQLRQLLF------GGKPNSKDDSESLPIE 685
VGS Q+ ++LF GGK K S P +
Sbjct: 584 VGSPAQVGEILFDKMSLEGGK-KGKTGKYSTPAD 616
Score = 69 (29.3 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
P EDP+I K+ N +D + YG+ V+ DTM
Sbjct: 413 PMLEDPAILKIGQNMKYDAKIFARYGVAVAPID-DTM 448
Score = 43 (20.2 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 523 IFGRRKLK--KDGSAGKISTIAPVEELQREEREL 554
+F + L+ K G GK ST A V E E EL
Sbjct: 594 LFDKMSLEGGKKGKTGKYSTPADVLEDLATEHEL 627
Score = 42 (19.8 bits), Expect = 9.4e-17, Sum P(3) = 9.4e-17
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 449 HVLENYGLKVSGFHA-DT-MHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMS 506
++L+ Y V G H D H+A ++D T + +R+ M ED + Q ++
Sbjct: 46 NMLQRY---VDGDHGPDAPTHLAVIFDKGSHTFRNDLYDLYKANREAMPEDLRP-QIPLT 101
Query: 507 KGNTDEGFMGKISMKDIFG 525
+ T E F I K++ G
Sbjct: 102 RAAT-EAF--NIPCKELEG 117
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 219 (82.2 bits), Expect = 4.4e-19, Sum P(3) = 4.4e-19
Identities = 53/114 (46%), Positives = 68/114 (59%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL VS K R+H S + T TGRLS+ PNLQN P + KIRQAFIA +
Sbjct: 651 LPLM---VSDKTNRLHTSYHQAVTATGRLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHK 707
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
++ DY Q+ELRI+AHL+N K ++ AF G D H TA ++ AVE G+V
Sbjct: 708 IVAIDYSQIELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIF-----AVELGEV 756
Score = 78 (32.5 bits), Expect = 4.4e-19, Sum P(3) = 4.4e-19
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
+ P E +IKK+ N +D +VL +Y + + G DTM
Sbjct: 411 QLKPLLESKTIKKIGQNLKYDANVLSHYDIALQGIEFDTM 450
Score = 69 (29.3 bits), Expect = 4.4e-19, Sum P(3) = 4.4e-19
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 593 SMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCP 651
SM + E P +L +ME G+L+D + L+E + + E + H
Sbjct: 528 SMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEA-------HNL 580
Query: 652 DAKYMNVGSDTQLRQLLF 669
K N+ S QL+Q+LF
Sbjct: 581 AGKSFNLASPKQLQQILF 598
Score = 41 (19.5 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 107 TETTRLHVMK-EVESCQTNTESSR-------DEKEDAKAQDRKRAAISTVINILESK 155
TETT +H MK E+ E + + EDA Q K ++ + +LESK
Sbjct: 363 TETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQLKPLLESK 419
Score = 40 (19.1 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 669 FGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
FG +P+ D +L +++ +P GV+ G KT K+
Sbjct: 179 FGVRPDQIIDYLALMGDKVDNIP---GVVKCGPKTAVKW 214
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 223 (83.6 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 52/114 (45%), Positives = 68/114 (59%)
Query: 800 SIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYK 856
S+ L S + LPL V+ K GRVH S + N TGRLS+ PNLQN P + +
Sbjct: 625 SLTKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRR 681
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
IRQAFIA G ++ ADY Q+ELRI+AHL+ +L+AF G D H TA ++
Sbjct: 682 IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVF 735
Score = 94 (38.1 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGYSLEAL 487
P ED +KKV N +D VL N G+ + G DTM + +++S SR G +L+ L
Sbjct: 400 PILEDAKLKKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYL 459
Query: 488 TGDRKVMSED 497
G + + ED
Sbjct: 460 -GHKNIAFED 468
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 213 (80.0 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 45/91 (49%), Positives = 59/91 (64%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GRVH S N T TGRLS+ PNLQN P + KIR+AFIA G+ ++ ADY Q+EL
Sbjct: 615 SGRVHTSYNQTVTNTGRLSSSEPNLQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQIEL 674
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAHL+ + DAF D H+RTA ++
Sbjct: 675 RVLAHLSEDRVFCDAFARDEDIHTRTAAEVF 705
Score = 91 (37.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P DP+++KV N +D VL +G+ ++G DTM + L + R G SL
Sbjct: 369 PLLTDPAVRKVGQNLKYDYQVLRRHGIVMAGVWCDTMVASYLINPVRSGHGLDSLAVEHL 428
Query: 490 DRKVMSEDKKA 500
D +++S ++ A
Sbjct: 429 DHRMISYEEVA 439
Score = 54 (24.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 33/133 (24%), Positives = 55/133 (41%)
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P IL +MET G+ +D L E+ ++ A + A P+ N+ S Q
Sbjct: 493 PLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALA----PEP--FNLNSPKQ 546
Query: 664 LRQLLF------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT-LRSIG 716
L ++LF GK S +E + ++ IA ++R + L+S
Sbjct: 547 LGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAIL---RYRGLAKLKSTY 603
Query: 717 VD-LPTEMYTATG 728
D LP ++ A+G
Sbjct: 604 TDALPRLVHPASG 616
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 209 (78.6 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 653 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYS 712
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 713 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 743
Score = 81 (33.6 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P ED S KV N +D V+ YG+++ G DTM + +++S G + +++
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNS---VGGKHDMDS 465
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
L + + ++++ KG F +I++++
Sbjct: 466 LA--LRFLQHSCISFEQVAGKGKNQLTF-NQIALEE 498
Score = 51 (23.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
Y+E P +L ++E G+++D LS + +++A + N + + A + P
Sbjct: 531 YREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY-ELAGQ--P----F 583
Query: 657 NVGSDTQLRQLLF 669
N+ S QL+ +LF
Sbjct: 584 NLSSPKQLQTILF 596
Score = 40 (19.1 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 703 TPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLA 741
+P + + I + LP T +G PS + L+ LA
Sbjct: 587 SPKQLQTILFEQM--KLPVLQKTPSGTPSTNEEVLQELA 623
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 748 YDCVDGAHDLD 758
Y+ V G HD+D
Sbjct: 454 YNSVGGKHDMD 464
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 209 (78.6 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 653 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYS 712
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 713 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 743
Score = 81 (33.6 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P ED S KV N +D V+ YG+++ G DTM + +++S G + +++
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNS---VGGKHDMDS 465
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
L + + ++++ KG F +I++++
Sbjct: 466 LA--LRFLQHSCISFEQVAGKGKNQLTF-NQIALEE 498
Score = 51 (23.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
Y+E P +L ++E G+++D LS + +++A + N + + A + P
Sbjct: 531 YREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY-ELAGQ--P----F 583
Query: 657 NVGSDTQLRQLLF 669
N+ S QL+ +LF
Sbjct: 584 NLSSPKQLQTILF 596
Score = 40 (19.1 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 703 TPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLA 741
+P + + I + LP T +G PS + L+ LA
Sbjct: 587 SPKQLQTILFEQM--KLPVLQKTPSGTPSTNEEVLQELA 623
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 748 YDCVDGAHDLD 758
Y+ V G HD+D
Sbjct: 454 YNSVGGKHDMD 464
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 210 (79.0 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 48/102 (47%), Positives = 63/102 (61%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 81 (33.6 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P ED KV N +D +L NYG+++ G DTM + + +S G + +++L
Sbjct: 407 PLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS---VAGRHDMDSLA- 462
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGR 526
+ + +++ KG F +I++++ GR
Sbjct: 463 -ERWLKHKTITFEEIAGKGKNQLTF-NQIALEEA-GR 496
Score = 50 (22.7 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 188 FEQQKKPIFKGLADLRNGAVGGHPKNHPGSVMAVTKQVTGSEEKSEDFVNDQIPLDKMTN 247
FE + P+ L+ + V PK +T ++ E+K+ + ++ L
Sbjct: 526 FENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQ 585
Query: 248 MECLRYEKE 256
++ + +EK+
Sbjct: 586 LQTILFEKQ 594
Score = 41 (19.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 50 NYSSKGTFDLPKIDEKREKLHGKQF 74
N+S + T L ++++K ++ G++F
Sbjct: 554 NHSEELTLRLAELEKKAHEIAGEEF 578
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 207 (77.9 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 46/102 (45%), Positives = 63/102 (61%)
Query: 810 LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP+Q V + R+H S N T TGRLS+ PNLQN P ++ KIR+AFIA PG
Sbjct: 618 LPVQ---VHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQ 674
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AH++ S++ AF D H TA ++
Sbjct: 675 MVAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVF 716
Score = 61 (26.5 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
E P EDP+ + N +D VL GL + DT+ + + +SS
Sbjct: 378 ELKPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSS 426
Score = 61 (26.5 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS--EIE---KVARAEQEA 637
K++ +++ P IL+KME G+LVD L IE ++A EQ+A
Sbjct: 494 KNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGRIALLEQQA 544
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 209 (78.6 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 814 GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
G ++ +GR+H + I+T TGRLS+ PNLQN P ++ IR+AF+A G L+ A
Sbjct: 662 GKQINSNSGRIHTFYSMISTATGRLSSSNPNLQNIPIRSEEGNAIRRAFVARKGYKLVSA 721
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELRI+AH+A ++ DAF D HS TA ++
Sbjct: 722 DYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIF 759
Score = 61 (26.5 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 23/91 (25%), Positives = 36/91 (39%)
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
++ Y+ +P +L ME GML+D + L + + N + A
Sbjct: 538 LYTIYERVEKPLIRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTE---- 593
Query: 654 KYMNVGSDTQLRQLLF---GGKPNSKDDSES 681
N+ S QL +LF G K + K S S
Sbjct: 594 --FNIASSKQLGTVLFDKMGIKKSKKLSSGS 622
Score = 39 (18.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 16/81 (19%), Positives = 34/81 (41%)
Query: 628 EKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL-PIE 685
+KV E ++++N K+ + A N S + + G K + S+ ++
Sbjct: 308 DKVIHHEPQSSMNEVDKFFKVGNASSAVNQNASSSDKT---MGGDKVIHHELQSSMNKVD 364
Query: 686 RIFKVPNTEGVIAEGKKTPSK 706
+ F+V NT + + + K
Sbjct: 365 KFFEVGNTSSTVNQNASSSDK 385
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 198 (74.8 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 40/88 (45%), Positives = 58/88 (65%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R+H S N T TGRLS+ PNLQN P + +IR+AFIA PG L+ DY Q++LR+
Sbjct: 629 RLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRV 688
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNM 909
LAHL+ ++++AF++ D H+ TA +
Sbjct: 689 LAHLSQDPALIEAFQSDQDIHTATAARL 716
Score = 56 (24.8 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPD 652
+ D + P IL+ ME G+++D + L + EK R F+ +
Sbjct: 498 LMDLFARVEMPLLPILLGMERTGIMLDTDLLKAMAEKTGR-------QIFKLEEDIYARA 550
Query: 653 AKYMNVGSDTQLRQLLF 669
N+GS QL ++LF
Sbjct: 551 GHNFNIGSPQQLGRILF 567
Score = 53 (23.7 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
A D I K HN + ++L + G V G DTM A L
Sbjct: 388 AALLGDEKISKTAHNAKYLMNLLLSAGQAVKGLDFDTMIAAHL 430
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 200 (75.5 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 46/121 (38%), Positives = 69/121 (57%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
AI+ + + + L S + PL + KN R++ S L T TGRLS++ PNLQN PA
Sbjct: 581 AITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNLQNIPA 640
Query: 850 LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
+ + F+A G S I DY Q+ELR+LAH + + +L+AF D H+RTA+ +
Sbjct: 641 HGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMI 700
Query: 910 Y 910
+
Sbjct: 701 F 701
Score = 54 (24.1 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 440 VWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRR 477
+ HN +D +++N + L + +ADTM +A L + S R
Sbjct: 381 IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLR 419
Score = 50 (22.7 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 287 DGSSYTPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEI-------LRSKLA 339
D S P K + K + + + EG +N NE S L + L KLA
Sbjct: 181 DSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLESKENAFLSKKLA 240
Query: 340 SFYSNVMVVDNVSAA 354
S Y N+ V + + A
Sbjct: 241 SLYDNLEVQNLIEKA 255
Score = 50 (22.7 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 669 FGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT 703
+G KPN D +L + +P +G+ A+G KT
Sbjct: 165 YGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKT 199
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 223 (83.6 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 48/95 (50%), Positives = 59/95 (62%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V GRVH ++ T TGRLS+ PNLQN P KD KIR AFIA G+ LI ADY
Sbjct: 574 VDANTGRVHTKYSMTATATGRLSSSNPNLQNIPIRSKDGEKIRSAFIAEKGHKLIAADYS 633
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL+ILAH+A+ K+ AF G D H TA ++
Sbjct: 634 QMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIF 668
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 910 YPHIRNAVETGQVLLEWHG 928
YP I+ +ET + + HG
Sbjct: 720 YPEIKRYMETTKAYAKKHG 738
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 244 KMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIECFEDGSSYT--PPPKLVSF 300
K N +C+ +E E +R G L + F ++ ++ S+T P K+ F
Sbjct: 301 KKENEKCIDKLEEFLEQCQRSGLLGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKF 359
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 204 (76.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 44/93 (47%), Positives = 66/93 (70%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQL 877
+ ++H N + T+TGRLS+ PNLQN P LE+ R KIRQAF+ + G + ADY Q+
Sbjct: 600 SSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGR-KIRQAFVPSEEGWIMYAADYSQI 658
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ELR+LAH+AN K +++AF+ D H++TAM+++
Sbjct: 659 ELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVF 691
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 192 (72.6 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 44/117 (37%), Positives = 72/117 (61%)
Query: 797 EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDR 854
++ + S ++ ++PL ++ + G++H + N T TGRL++ PNLQN P LE R
Sbjct: 534 QLMKLKSTYTDGLMPL----INERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGR 589
Query: 855 YKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
K+R+ FI PG IV ADY Q+ELR+LAH + +++A++ G D H +TA ++
Sbjct: 590 -KLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVF 645
Score = 58 (25.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
FY E P +L +ME G+ VDRE L E+ + E + A +
Sbjct: 429 FY-EIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEE------F 481
Query: 657 NVGSDTQLRQLLF 669
N+ S QL +LF
Sbjct: 482 NLNSPRQLGVILF 494
Score = 40 (19.1 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 450 VLENYGLK 457
+LENYGLK
Sbjct: 164 ILENYGLK 171
Score = 40 (19.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 435 PSIKKVWHNYSFDNHVLE 452
P IKK YS D VLE
Sbjct: 500 PVIKKTKTGYSTDAEVLE 517
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 192 (72.6 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 44/117 (37%), Positives = 72/117 (61%)
Query: 797 EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDR 854
++ + S ++ ++PL ++ + G++H + N T TGRL++ PNLQN P LE R
Sbjct: 534 QLMKLKSTYTDGLMPL----INERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGR 589
Query: 855 YKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
K+R+ FI PG IV ADY Q+ELR+LAH + +++A++ G D H +TA ++
Sbjct: 590 -KLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVF 645
Score = 58 (25.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
FY E P +L +ME G+ VDRE L E+ + E + A +
Sbjct: 429 FY-EIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEE------F 481
Query: 657 NVGSDTQLRQLLF 669
N+ S QL +LF
Sbjct: 482 NLNSPRQLGVILF 494
Score = 40 (19.1 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 450 VLENYGLK 457
+LENYGLK
Sbjct: 164 ILENYGLK 171
Score = 40 (19.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 435 PSIKKVWHNYSFDNHVLE 452
P IKK YS D VLE
Sbjct: 500 PVIKKTKTGYSTDAEVLE 517
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 198 (74.8 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 49/119 (41%), Positives = 69/119 (57%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALE 851
L + S+ L S + LP Q ++ + GR+H S + TGRLS+ PNLQN P
Sbjct: 620 LMQYRSMSKLKSTYTDRLPEQ---INPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRT 676
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQAF+A G L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVF 735
Score = 50 (22.7 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +E +G LVD L I+ V ++ A+ R +A + N+GS Q
Sbjct: 524 PLVPVLAGIERQGALVDANLLG-IQSVELGDKMTALER-EAFAIA----GEEFNLGSPKQ 577
Query: 664 LRQLLF 669
L +L+
Sbjct: 578 LGVILY 583
Score = 43 (20.2 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLEN--------YGLKVSGFHADTMHMARLWDSSRRTEGG 481
P EDP KV + F ++L N G+ + G DT+ + + DS+
Sbjct: 391 PLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDR 450
Query: 482 YSLEA 486
SL A
Sbjct: 451 DSLVA 455
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 179 (68.1 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+RI+AHL+ + +++AF G D HS A +
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF 717
Score = 65 (27.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L KME+ G+ VD L+E++ + A + + K +N+GS Q
Sbjct: 507 PVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAE------AAYGVIGKQINLGSPKQ 560
Query: 664 LRQLLFG--GKPNSK 676
L+ +LF G P +K
Sbjct: 561 LQVVLFDELGMPKTK 575
Score = 46 (21.3 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR---KVMSED 497
L GF AD + +A L +++ GY + +TGDR +++S+D
Sbjct: 117 LSEPGFEADDL-IATL--ATQAENEGYRVLVVTGDRDALQLVSDD 158
Score = 42 (19.8 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT 478
A + DP+ K H H L G + G +DT A L +R+
Sbjct: 384 AAWLADPAKPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRS 433
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 174 (66.3 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 50/163 (30%), Positives = 79/163 (48%)
Query: 758 DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
+ SGC + + NK+ + + + + E I ++ ++PL
Sbjct: 1344 ETSGCKPKLRH----LPTNKLILEQMNTQHPI--VGKILEYRQIQHTLTQCLMPL----- 1392
Query: 818 SGKNGRVHCSLNINTETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQ 876
+ GR+HC + T TGR+ PNLQN P + D RQ FIA N LI ADY Q
Sbjct: 1393 AKFIGRIHCWFEMCTSTGRILTSVPNLQNVPKRISSDGMSARQLFIANSENLLIGADYKQ 1452
Query: 877 LELRILAHLANCKSMLDAFKAGGDFHSRTAMNM-YPHIRNAVE 918
LELR+LAHL+N ++++ + D ++ +P R+AV+
Sbjct: 1453 LELRVLAHLSNDSNLVNLITSDRDLFEELSIQWNFP--RDAVK 1493
Score = 59 (25.8 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 30/96 (31%), Positives = 41/96 (42%)
Query: 14 NNARRFPIKKYAYRLSVGASSAKMVPFCQDLNSFE-GNYSSKGTFDLPKIDEKREKLHGK 72
N AR+F + + S S+ K + +L S++ + K F LP I REKLH
Sbjct: 37 NEARQFEDQHLIF--SAPTSAGKSI--VAELLSWKVASTGRKVLFVLPYISVAREKLHQI 92
Query: 73 QF------LEVASFYRPNPSNFSNETFSAKNTIHSS 102
Q + V F P SN NE A TI +
Sbjct: 93 QRCWRRDDISVCGFIGPQASN-PNEWLGAVCTIEKA 127
Score = 46 (21.3 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 21/101 (20%), Positives = 44/101 (43%)
Query: 296 KLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILR-SKLASFYSNVMVVDNVSAA 354
+L F+ N++N + G + + E+E EK I++ ++ + + + DN +
Sbjct: 827 ELPKFEE-NEENIQESCDSGLPDSCEGMEDELEEKENIVKMEEMTKSVTEMSLTDNTISF 885
Query: 355 KKVVWMLTNKYKHLVHACDTEVAK-IDVKQETPVDHGEVIC 394
K + + K V + + K ID +E V+ + C
Sbjct: 886 KSEDDLFKKEIK--VEEDEVFIKKEIDEDEEEIVEETVIEC 924
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 162 (62.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P EK+ IR+ F A G+ + ADY Q+ELRILA++AN + +
Sbjct: 559 TLTGRLSSSNPNLQNIPR-EKE---IRKIFTAKEGHHFLCADYSQIELRILAYIANVERL 614
Query: 892 LDAFKAGGDFHSRTAMNMY 910
A +G D H+ TA ++
Sbjct: 615 KCALASGTDLHTLTASQIF 633
Score = 52 (23.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 398 YSGPEADFGNGKSCIWVXXXXXXXXXXXNEFAPFFEDPSIKKVWH--NYSFDNHVLENY- 454
Y G + NG+ I+ N F D SIKK++H N + +++
Sbjct: 304 YEGQITIYKNGEKTIF-STREASIIGDLNMLQDLFTDRSIKKIFHSDNIPHPDPTNDSFE 362
Query: 455 GLKVSGFHADTMH 467
LKV + +T++
Sbjct: 363 DLKVIAYPLNTLN 375
>GENEDB_PFALCIPARUM|PF14_0112 [details] [associations]
symbol:PF14_0112 "POM1, putative" species:5833
"Plasmodium falciparum" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002562 InterPro:IPR007694
InterPro:IPR012337 Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868
PROSITE:PS51199 SMART:SM00474 SMART:SM00482 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014187 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678
GO:GO:0003887 GO:GO:0032508 KO:K02335 GO:GO:0020011
GenomeReviews:AE014187_GR SMART:SM00493 HSSP:P00582
RefSeq:XP_001348285.1 ProteinModelPortal:Q8ILY1
EnsemblProtists:PF14_0112:mRNA GeneID:811693 KEGG:pfa:PF14_0112
EuPathDB:PlasmoDB:PF3D7_1411400 HOGENOM:HOG000281341
ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 154 (59.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 39/104 (37%), Positives = 60/104 (57%)
Query: 804 LISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
L S F L L +++ K ++H + N + T +GR S+ +PNLQ P +K+ IR+ FI
Sbjct: 1733 LYSAFYLKLP-LHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-QKN---IREIFI 1787
Query: 863 AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
N I+AD+ Q+EL+I A + N + ML A+ D H+ TA
Sbjct: 1788 PNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTA 1831
Score = 54 (24.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/95 (23%), Positives = 40/95 (42%)
Query: 321 KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKV-VWMLTNKYKHLVHACDTEVAKI 379
K E E+ E L++++ ++DN S+ K + ++ TNK + + K+
Sbjct: 1189 KLCEELKDEEAEKLKNRVVVLSMRNCIIDNNSSIKDIRTFIKTNKLN--IKTAGKNLKKM 1246
Query: 380 DV----KQETPVDHGEVICFSIYSGPEADFGNGKS 410
D+ Q P ++ + Y GP N KS
Sbjct: 1247 DIFISILQNIPKEYITIKSGQKY-GPNKGLPNDKS 1280
Score = 50 (22.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 243 DKMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIECFEDGSSYTPPPKLVSFKR 302
DK NM + Y+ +Y + K +L+ NL + +I+ E+ + + +S
Sbjct: 496 DKEENMHNI-YDTTNNDYMDNK---ILS-NNLKSISSDKIKKKEEIDLFNG--QKISSNN 548
Query: 303 SNQ---KNPKNDAAEGTGQNKKASEN--ENSEKLEI 333
N KN KN+ T + K+ N E EK EI
Sbjct: 549 INVNILKNKKNETDNITNKENKSDNNLKEGMEKKEI 584
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 302 RSNQKNPKN--DAAEGTGQNKKAS---------ENENSEKLEILRSKLASFYSNVMVVDN 350
+SNQ+ KN D TG NK + N N K S +S Y+N + N
Sbjct: 1102 KSNQEMEKNNIDDKSSTGNNKNINGNSKGNNNINNNNKNKNSSSSSSSSSNYNNNEGIKN 1161
Query: 351 V 351
+
Sbjct: 1162 I 1162
Score = 44 (20.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/109 (28%), Positives = 40/109 (36%)
Query: 306 KNPKNDAAEGTGQNKKAS--ENENSEKLEILRSKLASFYSNVMVVD--NVSAAKKVVWML 361
+N KND E + K S E N KL S S Y + + D N KK ++
Sbjct: 88 RNEKND--ENFIKTNKYSYYEKRNKIKLNSATSTFVSKYYKININDVYNYLHRKKYEFIE 145
Query: 362 TNKYKHLVHA--CDTEVAKID--VKQETPVDHGEVICFSI-YSGPEADF 405
T+ L + C K D K E + G C Y G DF
Sbjct: 146 TDIKITLKYCPFCPPHKYKYDNMYKHEIFKNTGNSYCHRCGYKGSFYDF 194
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 304 NQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNV---MVVDNVSAAKKVVWM 360
N+ N N+ N + N ++ E++R K+ S + NV K+ +
Sbjct: 311 NKMNNNNNNNNNNNNNNNNNNNNINDNYEVVRIKIRSLKDKGYMRLYPKNVRNEMKLFFF 370
Query: 361 LTNKYKHL--VHACDTEVAKIDVKQET 385
+ K+ + + E+ + + QET
Sbjct: 371 GDHLIKNSEEIVLTEGEIDAMTISQET 397
>UNIPROTKB|Q8ILY1 [details] [associations]
symbol:POM1 "Pfprex" species:36329 "Plasmodium falciparum
3D7" [GO:0005739 "mitochondrion" evidence=ISS] [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002562 InterPro:IPR007694 InterPro:IPR012337
Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868 PROSITE:PS51199
SMART:SM00474 SMART:SM00482 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014187
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678 GO:GO:0003887
GO:GO:0032508 KO:K02335 GO:GO:0020011 GenomeReviews:AE014187_GR
SMART:SM00493 HSSP:P00582 RefSeq:XP_001348285.1
ProteinModelPortal:Q8ILY1 EnsemblProtists:PF14_0112:mRNA
GeneID:811693 KEGG:pfa:PF14_0112 EuPathDB:PlasmoDB:PF3D7_1411400
HOGENOM:HOG000281341 ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 154 (59.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 39/104 (37%), Positives = 60/104 (57%)
Query: 804 LISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
L S F L L +++ K ++H + N + T +GR S+ +PNLQ P +K+ IR+ FI
Sbjct: 1733 LYSAFYLKLP-LHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-QKN---IREIFI 1787
Query: 863 AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
N I+AD+ Q+EL+I A + N + ML A+ D H+ TA
Sbjct: 1788 PNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTA 1831
Score = 54 (24.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/95 (23%), Positives = 40/95 (42%)
Query: 321 KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKV-VWMLTNKYKHLVHACDTEVAKI 379
K E E+ E L++++ ++DN S+ K + ++ TNK + + K+
Sbjct: 1189 KLCEELKDEEAEKLKNRVVVLSMRNCIIDNNSSIKDIRTFIKTNKLN--IKTAGKNLKKM 1246
Query: 380 DV----KQETPVDHGEVICFSIYSGPEADFGNGKS 410
D+ Q P ++ + Y GP N KS
Sbjct: 1247 DIFISILQNIPKEYITIKSGQKY-GPNKGLPNDKS 1280
Score = 50 (22.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 243 DKMTNMECLRYEKEVAEYQERKGATVLTVPNLSDFRNSEIECFEDGSSYTPPPKLVSFKR 302
DK NM + Y+ +Y + K +L+ NL + +I+ E+ + + +S
Sbjct: 496 DKEENMHNI-YDTTNNDYMDNK---ILS-NNLKSISSDKIKKKEEIDLFNG--QKISSNN 548
Query: 303 SNQ---KNPKNDAAEGTGQNKKASEN--ENSEKLEI 333
N KN KN+ T + K+ N E EK EI
Sbjct: 549 INVNILKNKKNETDNITNKENKSDNNLKEGMEKKEI 584
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 302 RSNQKNPKN--DAAEGTGQNKKAS---------ENENSEKLEILRSKLASFYSNVMVVDN 350
+SNQ+ KN D TG NK + N N K S +S Y+N + N
Sbjct: 1102 KSNQEMEKNNIDDKSSTGNNKNINGNSKGNNNINNNNKNKNSSSSSSSSSNYNNNEGIKN 1161
Query: 351 V 351
+
Sbjct: 1162 I 1162
Score = 44 (20.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/109 (28%), Positives = 40/109 (36%)
Query: 306 KNPKNDAAEGTGQNKKAS--ENENSEKLEILRSKLASFYSNVMVVD--NVSAAKKVVWML 361
+N KND E + K S E N KL S S Y + + D N KK ++
Sbjct: 88 RNEKND--ENFIKTNKYSYYEKRNKIKLNSATSTFVSKYYKININDVYNYLHRKKYEFIE 145
Query: 362 TNKYKHLVHA--CDTEVAKID--VKQETPVDHGEVICFSI-YSGPEADF 405
T+ L + C K D K E + G C Y G DF
Sbjct: 146 TDIKITLKYCPFCPPHKYKYDNMYKHEIFKNTGNSYCHRCGYKGSFYDF 194
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 304 NQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNV---MVVDNVSAAKKVVWM 360
N+ N N+ N + N ++ E++R K+ S + NV K+ +
Sbjct: 311 NKMNNNNNNNNNNNNNNNNNNNNINDNYEVVRIKIRSLKDKGYMRLYPKNVRNEMKLFFF 370
Query: 361 LTNKYKHL--VHACDTEVAKIDVKQET 385
+ K+ + + E+ + + QET
Sbjct: 371 GDHLIKNSEEIVLTEGEIDAMTISQET 397
>DICTYBASE|DDB_G0274419 [details] [associations]
symbol:DDB_G0274419 species:44689 "Dictyostelium
discoideum" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001098 Pfam:PF00476
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AAFI02000012
GO:GO:0003887 eggNOG:COG0749 RefSeq:XP_644204.1
ProteinModelPortal:Q86HT8 EnsemblProtists:DDB0167627 GeneID:8619633
KEGG:ddi:DDB_G0274421 InParanoid:Q86HT8 Uniprot:Q86HT8
Length = 519
Score = 106 (42.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
IR +FI+ G SL+ DY Q+ELRI+AH + K +++ F++G D
Sbjct: 220 IRNSFISREGYSLVALDYNQIELRIMAHYSKDKHLIEYFESGKD 263
Score = 73 (30.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 768 YKGAVASNNKIFATEQ------EAREACDAISALCEVCSIDSLISNFI-LPLQGSNVSGK 820
YK +SN + A E+ ++ D I ++ V + L S++I + L+ + +
Sbjct: 63 YK-ITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNNL 121
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQP 848
+ C N T TGRLS+ +PN Q+ P
Sbjct: 122 KFQFSCLWNQTGTTTGRLSSTKPNFQSLP 150
>DICTYBASE|DDB_G0282679 [details] [associations]
symbol:DDB_G0282679 "DNA polymerase nu" species:44689
"Dictyostelium discoideum" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001098 Pfam:PF00476 SMART:SM00482
dictyBase:DDB_G0282679 EMBL:AAFI02000047 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 eggNOG:COG0749 RefSeq:XP_640197.1
EnsemblProtists:DDB0204913 GeneID:8623737 KEGG:ddi:DDB_G0282679
InParanoid:Q54S42 OMA:IIQGSSA Uniprot:Q54S42
Length = 1459
Score = 113 (44.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
IR +FI+ G SL+V DY Q+ELRI+AH + K +++ F++G D + A+ +
Sbjct: 1183 IRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAVRL 1235
Score = 60 (26.2 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQP 848
++ C N T TGRLS+ PNLQ P
Sbjct: 1081 QISCQWNQTGTATGRLSSSEPNLQTIP 1107
Score = 58 (25.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 287 DGSSYTPPPKLVSFKRSNQKNPK-NDAAEGTGQNKKASENENSEKLEILRSK 337
DG YT P++ + + K+ K ND N + N N++ E SK
Sbjct: 267 DGVQYTYDPQIAETRSAYLKHQKLNDNNNSNNNNNNNNNNNNNKTTEWTDSK 318
>UNIPROTKB|F1PCT5 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 EMBL:AAEX03002458
Ensembl:ENSCAFT00000023669 Uniprot:F1PCT5
Length = 546
Score = 106 (42.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 832 TETGRLSARRPNLQ-------------NQPALEKDRYKI--RQAFIAVPGNSLIVADYGQ 876
T TGRLSAR PN+Q N E I R F+A ++ + AD+ Q
Sbjct: 200 TVTGRLSARHPNIQGISKHPIKITKPQNFKGTEGTMLTISPRSMFVAPESHTFLAADFSQ 259
Query: 877 LELRILAHLANCKSMLDAFKAGG 899
+ELRILAHL+ +L F+ G
Sbjct: 260 IELRILAHLSGDPELLKLFRESG 282
Score = 64 (27.6 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P IL ME+ + V+RE E+E+ + A + + + A H + + S+ Q
Sbjct: 63 PLIPILAVMESHSIRVNRE---EMERTS-ALLGSRLKELEQEA--HFVAGEQFLITSNNQ 116
Query: 664 LRQLLFGG-KPNSKDDSESLPIERIFKVPNT-EGVI 697
L+++LFG K + E+LP + ++P+T E V+
Sbjct: 117 LQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVL 152
>UNIPROTKB|H0YA88 [details] [associations]
symbol:POLN "DNA polymerase nu" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
Pfam:PF00476 PRINTS:PR00868 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 EMBL:AL136360 EMBL:AL158068
HGNC:HGNC:18870 ChiTaRS:POLN Ensembl:ENST00000511098 Uniprot:H0YA88
Length = 524
Score = 102 (41.0 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 32/93 (34%), Positives = 47/93 (50%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQN---------QPALEKDRY-KI-----RQAFIA 863
K G + + N T TGRLSA+ PN+Q P K + KI R F++
Sbjct: 187 KKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVS 246
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
G++ + AD+ Q+ELRIL HL+ +L F+
Sbjct: 247 SKGHTFLAADFSQIELRILTHLSGDPELLKLFQ 279
Score = 67 (28.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P IL ME+ + V++E E+EK + A A + + A H + + S+ Q
Sbjct: 64 PLIPILAVMESHAIQVNKE---EMEKTS-ALLGARLKELEQEA--HFVAGERFLITSNNQ 117
Query: 664 LRQLLFGG-KPNSKDDSESLPIERIFKVPNT 693
LR++LFG K + SLP + K P+T
Sbjct: 118 LREILFGKLKLHLLSQRNSLPRTGLQKYPST 148
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 940 911 0.00089 122 3 11 23 0.44 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 626 (67 KB)
Total size of DFA: 452 KB (2215 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.09u 0.10s 92.19t Elapsed: 00:00:06
Total cpu time: 92.09u 0.10s 92.19t Elapsed: 00:00:06
Start: Sat May 11 11:51:35 2013 End: Sat May 11 11:51:41 2013