BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002293
(940 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/649 (70%), Positives = 520/649 (80%), Gaps = 38/649 (5%)
Query: 315 GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
G G N++ KL+I R +L S Y +V+VVDNV+ AK+VV LTN+Y+HL+HACDT
Sbjct: 16 GIGSNEQVQTKGRPHKLDI-RERLTSIYESVLVVDNVTMAKEVVSKLTNQYRHLIHACDT 74
Query: 375 EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
EVA+IDVK+ETP+DHGE+ C SIY GPEADFG+GKSCIWVD+LDGGGRDLLNEFA FFED
Sbjct: 75 EVARIDVKEETPIDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLNEFALFFED 134
Query: 435 PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
P IKKVWHNYSFDNHV+ENYG VSGFHADTMHMARLWDSSRR +GGYSLEALTGD+KVM
Sbjct: 135 PDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALTGDQKVM 194
Query: 495 SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
Y++ +GK+SMK IFG++KLKKDGS GK++ IAPVEELQREERE
Sbjct: 195 RGAGSCYKE----------LIGKVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREEREP 244
Query: 555 WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
WI YSA D+I+TL+LYKS++ +L +M W LDGK V KSMFDFYQEYWQPFGEILV+MET
Sbjct: 245 WICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMET 304
Query: 615 EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
EGMLVDR YL+E+EKVA+AEQE A NRFR WA K+CPDAKYMNVGSDTQLRQLLFGG PN
Sbjct: 305 EGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGVPN 364
Query: 675 SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
SKD +LP ++ FKVPN + VI EGKKTP+K+RNI L SIGVDLP E YTA+GWPSV G
Sbjct: 365 SKDPLLTLPEDKTFKVPNVDKVIEEGKKTPTKYRNIKLCSIGVDLPIETYTASGWPSVSG 424
Query: 735 DALKTLARNISAEYDCVDGAHD----------LDDSGCT--EETEYKGAVASNN------ 776
ALK LA IS D V A+D LDDSG E++ +G+ N
Sbjct: 425 VALKALAGKIS---DAVSDANDAAGLQLDDAVLDDSGTMTDEDSNSEGSYVENKVESEYV 481
Query: 777 ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
+ F T +E EAC AI++LCEVCSIDSLISNFILPLQ S++SGK GRVHCSLNINTE
Sbjct: 482 AGLRRFQTPEEGIEACHAIASLCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNINTE 541
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSMLD
Sbjct: 542 TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLD 601
Query: 894 AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
AFKAGGDFHSRTAMNMYPHIR A+E QVLLEW+ GE+KPPVPLLK+
Sbjct: 602 AFKAGGDFHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKPPVPLLKD 650
>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/646 (70%), Positives = 515/646 (79%), Gaps = 32/646 (4%)
Query: 315 GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
G+G KA N K I +L + Y V+VVDN S A++VV LTN+Y+HL+HACDT
Sbjct: 16 GSGSTDKAQTNGRPHKPGI-HERLTNIYERVLVVDNASMAREVVSKLTNQYRHLIHACDT 74
Query: 375 EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
EVAKI+VK+ETP+DHGE+ CFSIYSGPEADFGNGKSCIWVD+LDGGGRDLL+EFAPFFE
Sbjct: 75 EVAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLHEFAPFFES 134
Query: 435 PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
P IKKVWHNYSFDNHV+ENYG+ VSGFHADTMHMARLWDSSRR GGYSLEALTGD+KVM
Sbjct: 135 PDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSRRINGGYSLEALTGDQKVM 194
Query: 495 SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
+ Y++ +GK+SMK+IFG++K+KKDGS GK++TIAPVEELQRE RE
Sbjct: 195 RGAEPCYKE----------LIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREAREP 244
Query: 555 WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
WI YSA D+I+TL+LYKSL+ +L +M W +DGKPV KSMFDFY EYWQPFGEILV+MET
Sbjct: 245 WICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRMET 304
Query: 615 EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
EGMLVDR YL+ EKVA+AEQE A +RFRKWAS++CPDAKYMNVGSDTQLRQLLFGG N
Sbjct: 305 EGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGICN 364
Query: 675 SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
SKD +LP + FKVPN + VI EGKKTP+KF +I L SI VDLP E YTA+GWPSV G
Sbjct: 365 SKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVSG 424
Query: 735 DALKTLARNISAEYDCVDGAHD------LDDSGCTE------------ETEYKGAVASNN 776
DALKTLAR IS+EY D A DDS E E + N
Sbjct: 425 DALKTLARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGNL 484
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
+ F T +E EAC AIS+LCE+CSIDSLISNFILPLQ SN+SGK+GRVHCSLNINTETGR
Sbjct: 485 RRFQTPEEGIEACHAISSLCELCSIDSLISNFILPLQSSNLSGKSGRVHCSLNINTETGR 544
Query: 837 LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
LSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELR+LAHLANCKSMLDAFK
Sbjct: 545 LSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFK 604
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
AGGDFHSRTA+NMYPHIR A+E +VLLEW+ GEDKPPVPLLK+
Sbjct: 605 AGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKD 650
>gi|225461738|ref|XP_002283388.1| PREDICTED: uncharacterized protein LOC100257153 [Vitis vinifera]
Length = 1034
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/622 (71%), Positives = 504/622 (81%), Gaps = 28/622 (4%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R KL+ Y V++VD++ AKK+V LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 240 RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 299
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 300 FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 359
Query: 455 GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
LKVSGFHADTMHMARLWDSSRR GGYSLEALT D KVMS MS G E
Sbjct: 360 DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 410
Query: 515 MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
+GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 411 IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 470
Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
KLL+ W LDG MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 471 NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 528
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG N KD +E LP+E+ FK+PN +
Sbjct: 529 EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 588
Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
VI EGKK P+KFRNITL S V++P EM TA+GWPSV GDALKTLA +SA++D +D A
Sbjct: 589 KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 648
Query: 755 H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
D + + + E G A + F QE R+AC AI+ALCEVCS
Sbjct: 649 ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 708
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
I+SLISNFILPLQ +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 709 INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 768
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE
Sbjct: 769 FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 828
Query: 921 QVLLEWH---GEDKPPVPLLKN 939
+VLLEWH GEDKPPVPLLK+
Sbjct: 829 EVLLEWHPQPGEDKPPVPLLKD 850
>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
Length = 1118
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/622 (71%), Positives = 504/622 (81%), Gaps = 28/622 (4%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R KL+ Y V++VD++ AKK+V LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 324 RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 383
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 384 FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 443
Query: 455 GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
LKVSGFHADTMHMARLWDSSRR GGYSLEALT D KVMS MS G E
Sbjct: 444 DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 494
Query: 515 MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
+GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 495 IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 554
Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
KLL+ W LDG MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 555 NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 612
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG N KD +E LP+E+ FK+PN +
Sbjct: 613 EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 672
Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
VI EGKK P+KFRNITL S V++P EM TA+GWPSV GDALKTLA +SA++D +D A
Sbjct: 673 KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 732
Query: 755 H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
D + + + E G A + F QE R+AC AI+ALCEVCS
Sbjct: 733 ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 792
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
I+SLISNFILPLQ +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 793 INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 852
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE
Sbjct: 853 FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 912
Query: 921 QVLLEWH---GEDKPPVPLLKN 939
+VLLEWH GEDKPPVPLLK+
Sbjct: 913 EVLLEWHPQPGEDKPPVPLLKD 934
>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
Length = 963
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/642 (69%), Positives = 513/642 (79%), Gaps = 32/642 (4%)
Query: 315 GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
G +K S + + + ++ +L S + ++VV+++S A +V LTN+Y+HL+HACDT
Sbjct: 152 AVGDAEKFSNTKEASRHPDVKRRLTSIFGKILVVNDMSMADGIVKKLTNEYRHLIHACDT 211
Query: 375 EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
EVAKIDVKQETPV HGE+ICFSIYSGPEADFGNG SCIWVD+LDGGGRDLL +F PFFE+
Sbjct: 212 EVAKIDVKQETPVGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLVKFKPFFEN 271
Query: 435 PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
P IKKVWHNYSFD HV++NY + V GFHADTMHMARLW+SSRRTEGGYSLEALTGD++VM
Sbjct: 272 PEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKRVM 331
Query: 495 SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
S + + EG +GK+SMK IFG+ KLKKDGS GK+ T+APVEELQREERE
Sbjct: 332 SGAQSCF----------EGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREP 381
Query: 555 WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
WI YSA D+I+T +LY+SLK+KL M W L+GKPV GKSM DFY+EYW+PFGE+LV+MET
Sbjct: 382 WICYSALDAISTWQLYESLKRKLFHMPWNLNGKPV-GKSMLDFYKEYWRPFGELLVRMET 440
Query: 615 EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
EG+LVDR YL+EIEKVA+ EQE AVNRFR WA K+CPDAKYMNVGSDTQLRQL FGG N
Sbjct: 441 EGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIAN 500
Query: 675 SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
SKD LP+E+ KVPN + VI EGKK P+KF +ITL IG + P EMYTATGWPSV G
Sbjct: 501 SKDPDSILPVEKKIKVPNVDKVIEEGKKAPTKFCSITLHKIG-NFPAEMYTATGWPSVSG 559
Query: 735 DALKTLARNISAEYDCVDGAHDLDDSGC----TEETEYK----------GAVASNNKIFA 780
DALKTLA +SAEYD VD D+ + GC TE +E + A + K F
Sbjct: 560 DALKTLAGKVSAEYDFVD---DIVEDGCELETTEGSETQVPSVLKDVDTSAYGTALKAFP 616
Query: 781 TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSAR 840
+ +E EAC AI++LCEVCSIDSLISNFILPLQGSNVSGK GRVHCSLNINTETGRLSAR
Sbjct: 617 SLEEGIEACHAIASLCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNINTETGRLSAR 676
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
RPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGD
Sbjct: 677 RPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGD 736
Query: 901 FHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
FHSRTAMNMYPHI AV+ G+VLLEW GE+KPPVPLLK+
Sbjct: 737 FHSRTAMNMYPHIHEAVDKGEVLLEWDPQPGEEKPPVPLLKD 778
>gi|449513483|ref|XP_004164337.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212518
[Cucumis sativus]
Length = 1126
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/709 (64%), Positives = 541/709 (76%), Gaps = 34/709 (4%)
Query: 251 LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
++ +K+ Q KG+ V VP++S + RN + S PK + F +
Sbjct: 248 MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303
Query: 310 NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
+ A E G K E + ++ +L Y +V+VVD+VSAAK+VV MLT
Sbjct: 304 SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363
Query: 364 KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423
KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD+LDGGG++
Sbjct: 364 KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWDSSRR GGYS
Sbjct: 424 ILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWDSSRRVSGGYS 483
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
LEAL+ DRKVMS+ + +K++ +GK+SMK IFGR+K K DGS GK+ I P
Sbjct: 484 LEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDGSEGKLVVIPP 534
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
VEELQREER+ W+SYSA DSI TLKLY+SLK KL M W+ +G+ +PG++M +FY+EYW+
Sbjct: 535 VEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQTMINFYEEYWK 594
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
PFGE+LVKMETEGMLVDR YL+EIEK+A EQE A N+FR WASK+C DAKYMNVGSD Q
Sbjct: 595 PFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDAKYMNVGSDAQ 654
Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSI-GVDLPTE 722
+RQLLFGG NSK+ E LP ER FKVPN+E VI EGKK P KFRNITL I TE
Sbjct: 655 VRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKLPXKFRNITLHCIKDKAFSTE 714
Query: 723 MYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEETEYKGAVASNN 776
+YTA+GWPSVG DALK LA +SAE+D C D D D E E KG ++ N+
Sbjct: 715 IYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE-ESKGHLSDND 773
Query: 777 ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGRVHCSLNINTE
Sbjct: 774 TALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGRVHCSLNINTE 833
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+
Sbjct: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLE 893
Query: 894 AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW G++KPPVPLLK+
Sbjct: 894 AFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKD 942
>gi|356499384|ref|XP_003518521.1| PREDICTED: uncharacterized protein LOC100797016 [Glycine max]
Length = 1077
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/619 (71%), Positives = 505/619 (81%), Gaps = 22/619 (3%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L S Y +++VVDN+ A++V MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+
Sbjct: 284 LRDRLCSIYDDILVVDNIPLAEEVSKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 343
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 344 CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 403
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG KVSGFHADTMHMARLWDSSR +GGYSLE LTGDR+VMS + ++KD++
Sbjct: 404 YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLT------- 456
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
GK+SMK IF ++KLKKDGS GK S IAPVEELQREER WI YSA D+ +TLKLY+SL
Sbjct: 457 --GKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQREERIPWICYSALDASSTLKLYESL 514
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K L +M WK DG PV GK+M+DFY EYW+PFGE+LV ME+EGMLVDR YL IEKVA+A
Sbjct: 515 KSHLSDMPWKFDGLPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKA 574
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG N KD S++LP ERIFK+PN
Sbjct: 575 EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSSQTLPTERIFKIPNV 634
Query: 694 EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
+ VI EGKK P KFR+I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD D
Sbjct: 635 DNVIEEGKKAPKKFRDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 694
Query: 754 AHDLDDSGCTEETEYKGAVASNN----------KIFATEQEAREACDAISALCEVCSIDS 803
+LDD +E + VAS F TE+E REAC AI+ALC+VCSI+S
Sbjct: 695 DCNLDDLDDEDENPSQSQVASVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINS 754
Query: 804 LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
LISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA
Sbjct: 755 LISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 814
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
PGNSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE +VL
Sbjct: 815 APGNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVL 874
Query: 924 LEWH---GEDKPPVPLLKN 939
LEWH GEDKPPVPLLK+
Sbjct: 875 LEWHPQPGEDKPPVPLLKD 893
>gi|449470431|ref|XP_004152920.1| PREDICTED: uncharacterized protein LOC101212518 [Cucumis sativus]
Length = 1136
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/719 (64%), Positives = 542/719 (75%), Gaps = 44/719 (6%)
Query: 251 LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
++ +K+ Q KG+ V VP++S + RN + S PK + F +
Sbjct: 248 MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303
Query: 310 NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
+ A E G K E + ++ +L Y +V+VVD+VSAAK+VV MLT
Sbjct: 304 SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363
Query: 364 KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD-------- 415
KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD
Sbjct: 364 KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423
Query: 416 --LLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
LLDGGG+++L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWD
Sbjct: 424 ILLLDGGGKEILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWD 483
Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDG 533
SSRR GGYSLEAL+ DRKVMS+ + +K++ +GK+SMK IFGR+K K DG
Sbjct: 484 SSRRVSGGYSLEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDG 534
Query: 534 SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
S GK+ I PVEELQREER+ W+SYSA DSI TLKLY+SLK KL M W+ +G+ +PG++
Sbjct: 535 SEGKLVVIPPVEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQT 594
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
M +FY+EYW+PFGE+LVKMETEGMLVDR YL+EIEK+A EQE A N+FR WASK+C DA
Sbjct: 595 MINFYEEYWKPFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDA 654
Query: 654 KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLR 713
KYMNVGSD Q+RQLLFGG NSK+ E LP ER FKVPN+E VI EGKKT SKFRNITL
Sbjct: 655 KYMNVGSDAQVRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKTASKFRNITLH 714
Query: 714 SI-GVDLPTEMYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEET 766
I TE+YTA+GWPSVG DALK LA +SAE+D C D D D E
Sbjct: 715 CIKDKAFSTEIYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE- 773
Query: 767 EYKGAVASNN---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGR 823
E KG ++ N+ K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGR
Sbjct: 774 ESKGHLSDNDTALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGR 833
Query: 824 VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILA 883
VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILA
Sbjct: 834 VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILA 893
Query: 884 HLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
HLANCKSML+AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW G++KPPVPLLK+
Sbjct: 894 HLANCKSMLEAFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKD 952
>gi|356553303|ref|XP_003544996.1| PREDICTED: uncharacterized protein LOC100807239 [Glycine max]
Length = 847
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/618 (70%), Positives = 499/618 (80%), Gaps = 21/618 (3%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L S Y +++VVDN+ A++V MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+
Sbjct: 55 LRDRLCSIYDDILVVDNIHLAEEVAKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 114
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 115 CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 174
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG KVSGFHADTMHMARLWDSSR +GGYSLE LTGDR+VMS + ++KD+
Sbjct: 175 YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDL-------- 226
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
+GK+SMK IF ++KLKKDGS GK S IAPVEELQR+ER WI YSA D+ +TLKLY+SL
Sbjct: 227 -IGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESL 285
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K L +M WK DG PV GK+M+DFY EYW PFGE+LV ME+EGMLVDR YL IEKVA+A
Sbjct: 286 KSHLSDMPWKFDGVPVYGKTMYDFYNEYWCPFGELLVMMESEGMLVDRAYLESIEKVAKA 345
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG N KD +++LP ERIFK+PN
Sbjct: 346 EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNV 405
Query: 694 EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV-- 751
VI EGKK P +F +I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD
Sbjct: 406 NNVIEEGKKAPKRFCDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 465
Query: 752 DGAHDLDD-------SGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSL 804
D DLDD S K A + F TE+E REAC AI+ALC+VCSI+SL
Sbjct: 466 DCNLDLDDEDENPSQSQVAPVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSL 525
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
ISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA
Sbjct: 526 ISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAA 585
Query: 865 PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE +VLL
Sbjct: 586 PRNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVLL 645
Query: 925 EWH---GEDKPPVPLLKN 939
EWH GEDKPPVPLLK+
Sbjct: 646 EWHPQPGEDKPPVPLLKD 663
>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
Length = 1152
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/625 (69%), Positives = 503/625 (80%), Gaps = 26/625 (4%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L + Y V +VDN+SAAK+VV LT++Y+HLVHACDTEVAKIDVKQ+TPVDHGE+I
Sbjct: 351 LRERLGAMYDKVHIVDNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGEII 410
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIYSGPEADFG+GKSCIWVD+LDG G++LL EFAPFF+DPSI+KVWHNYSFDNHV+EN
Sbjct: 411 CFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIEN 470
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG KVSGFHADTMHMARLWDSSRRT GGYSLEALTGD VM + + + + + G EG
Sbjct: 471 YGFKVSGFHADTMHMARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EG 527
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
GKISMK IFGR+KLKKDG+ GK++ I VEELQ+ ERELWI YSA DSI+TL LY+SL
Sbjct: 528 LFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESL 587
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K KL + W DG V SM++FY++YW+PFGE+LV+METEG+LVDR YL+EIEKVA+A
Sbjct: 588 KNKLAKRIWTFDG--VRKGSMYEFYEKYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKA 645
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
EQ+ A NRFR WA+K+C DAKYMNVGSDTQLRQL FGG N K+ ESLP E+ FKVPN
Sbjct: 646 EQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNI 705
Query: 694 EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
+ V EGKK P+KFR I L I + TEMYTA+GWPSV GDALK L+ +SA++D +D
Sbjct: 706 DKVTEEGKKAPTKFRKIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDE 765
Query: 754 AHDLDDSGCTEETEYKGAVASNNKI----------------FATEQEAREACDAISALCE 797
A D++ ET A+A+NN++ F Q+ EAC AI+ALCE
Sbjct: 766 AD--DNAEEDPETSIDEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCE 823
Query: 798 VCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
+CSI SLISNFILPLQG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKI
Sbjct: 824 MCSIGSLISNFILPLQGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 883
Query: 858 RQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
RQAF+A GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY HIR AV
Sbjct: 884 RQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAV 943
Query: 918 ETGQVLLEWH---GEDKPPVPLLKN 939
E G+VLLEWH GE+KPPVPLLK+
Sbjct: 944 ENGRVLLEWHPQPGEEKPPVPLLKD 968
>gi|357494395|ref|XP_003617486.1| DNA polymerase [Medicago truncatula]
gi|355518821|gb|AET00445.1| DNA polymerase [Medicago truncatula]
Length = 1084
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/626 (68%), Positives = 503/626 (80%), Gaps = 33/626 (5%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L Y +++VVDN+ A++VV M+T KY+HL++ACDTEVAKIDVKQETPVDHGE+
Sbjct: 288 LRDRLCRIYEDILVVDNIPLAEEVVKMITVKYRHLIYACDTEVAKIDVKQETPVDHGEIT 347
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIY GP+ADFG GKSCIWVD+LDGGG+++L +FA FF DPSI KVWHNYSFD HV+EN
Sbjct: 348 CFSIYGGPDADFGGGKSCIWVDVLDGGGKEILEKFANFFSDPSIMKVWHNYSFDCHVIEN 407
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG KVSGFHADTMHMARLWDSSR+ GGYSLE L+GD+KVMS S+ N +E
Sbjct: 408 YGFKVSGFHADTMHMARLWDSSRQLNGGYSLEKLSGDKKVMSR---------SQFNHEED 458
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
+GK+SMK +FG++K+KKDGS GKI TIAPVE+LQR+ER WI YSA D+ +TL LY+SL
Sbjct: 459 LIGKVSMKTLFGKKKVKKDGSEGKIITIAPVEDLQRDERIPWICYSALDAKSTLNLYESL 518
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K LL+M W DG PV GK+M+DFY EYW+PFGEILV+ME+EGMLVDREYL IEKVA+
Sbjct: 519 KSYLLDMPWNFDGVPVSGKTMYDFYNEYWRPFGEILVRMESEGMLVDREYLEGIEKVAKV 578
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
EQE AV+RFRKWA ++CPDAKYMNVGSD QLRQLLFGG N KD + +LP ERIFKVPN
Sbjct: 579 EQEVAVDRFRKWACRYCPDAKYMNVGSDLQLRQLLFGGTLNRKDSNLALPTERIFKVPNV 638
Query: 694 EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
+ VI EGKK P KFR++ ++S+G L TEMYTA+GWPSV GDALK LA NIS+++D D
Sbjct: 639 DEVIEEGKKAPKKFRDMKVKSLGYTLKTEMYTASGWPSVSGDALKVLAGNISSDFDFTDE 698
Query: 754 AHDLD-----------------DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALC 796
++LD + + + Y A ++ F TE+E REAC AI+ALC
Sbjct: 699 IYNLDDDHDDGDEHGNLSQNHIEVSKVDNSAYGTAFSA----FPTEKEGREACHAIAALC 754
Query: 797 EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
EV SI+SLISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYK
Sbjct: 755 EVSSINSLISNFILPLQGHNISGKDNRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 814
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
IRQAFIA PGNSLIVADYGQLELRILAHLANCKSM++AFKAGGDFHSRTAMNMYP+IR A
Sbjct: 815 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMMEAFKAGGDFHSRTAMNMYPYIREA 874
Query: 917 VETGQVLLEWH---GEDKPPVPLLKN 939
VE +VLLEWH GEDKPPVPLLK+
Sbjct: 875 VEKKEVLLEWHPQPGEDKPPVPLLKD 900
>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
Length = 1152
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/670 (66%), Positives = 518/670 (77%), Gaps = 34/670 (5%)
Query: 296 KLVSFKRSNQKNPKN-------DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVV 348
K V +R+ K KN D GT + E ++ LR +L + Y V +V
Sbjct: 307 KRVILERATNKMEKNAIQSMETDVVNGTKTRIVSDEGTGVSQVS-LRERLGAMYDKVHMV 365
Query: 349 DNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG 408
DN+SAAK+VV LT++Y+HLVHACDTEVAKIDVKQ+TPVDHG++ICFSIYSGPEADFG+G
Sbjct: 366 DNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGDIICFSIYSGPEADFGDG 425
Query: 409 KSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
KSCIWVD+LDGGG++LL EFAPFF+DPSI+KVWHNYSFDNHV+ENYG KVSGFHADTMHM
Sbjct: 426 KSCIWVDVLDGGGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHM 485
Query: 469 ARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528
ARLWDSSRRT GGYSLEALTGD VM + + + + + G EG GKISMK IFGR+K
Sbjct: 486 ARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EGLFGKISMKTIFGRKK 542
Query: 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKP 588
LKKDG+ GK++ I VEELQ+ ERELWI YSA DSI+TL LY+SLK KL + W DG
Sbjct: 543 LKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDG-- 600
Query: 589 VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK 648
V SM++FY+ YW+PFGE+LV+METEG+LVDR YL+EIEKVA+AEQ+ A NRFR WA+K
Sbjct: 601 VRKGSMYEFYERYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAK 660
Query: 649 HCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFR 708
+CPDAKYMNVGSDTQLRQL FGG N K+ ESLP E+ FKVPN + I EGKK P+KFR
Sbjct: 661 YCPDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNVDKGIEEGKKAPTKFR 720
Query: 709 NITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
I L I + TEMYTA+GWPSV GDALK L+ +SA++D +D A D + ET
Sbjct: 721 KIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDEADDDAEE--DPETRI 778
Query: 769 KGAVASNNKI----------------FATEQEAREACDAISALCEVCSIDSLISNFILPL 812
A+A+NN++ F Q+ EAC AI+ALCE+CSIDSLISNFILPL
Sbjct: 779 DEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCEMCSIDSLISNFILPL 838
Query: 813 QGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
QG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF+A GNSLIVA
Sbjct: 839 QGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVA 898
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GE 929
DYGQLELRILAHLAN KSMLDAFKAGGDFHSRTAMNMY HIR AVE G+VLLEWH GE
Sbjct: 899 DYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEVLLEWHPQPGE 958
Query: 930 DKPPVPLLKN 939
+KPPVPLLK+
Sbjct: 959 EKPPVPLLKD 968
>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
Length = 1067
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/665 (63%), Positives = 506/665 (76%), Gaps = 31/665 (4%)
Query: 295 PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
PK +R + + A G S+ E S + +R L Y V++VDNV AA
Sbjct: 214 PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 273
Query: 355 KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
K V L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 274 KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 333
Query: 415 DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
D+L GR++L EF P+FED I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 334 DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 393
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+RR +GGYSLEALT D KV+ + + + F+GKISMK IFG+RKLKKDGS
Sbjct: 394 ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 444
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
GKI I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL M W LDGKPV G++M
Sbjct: 445 EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 504
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 505 LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 564
Query: 655 YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
YMN+GSDTQLRQL FGG NS D E LP+E++FKVPN + VI EGKKTP+KFRNI L
Sbjct: 565 YMNIGSDTQLRQLFFGGISNSSHD-EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623
Query: 715 IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
I L TE +TA+GWPSVGGD LK LA +SAEYD +D D+
Sbjct: 624 ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683
Query: 758 DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
S +ET+ A + F + +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684 QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742
Query: 818 SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743 SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
ELRILAHL CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH GEDKPPV
Sbjct: 803 ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862
Query: 935 PLLKN 939
PLLK+
Sbjct: 863 PLLKD 867
>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
Length = 1049
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/665 (63%), Positives = 506/665 (76%), Gaps = 32/665 (4%)
Query: 295 PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
PK +R + + A G S+ E S + +R L Y V++VDNV AA
Sbjct: 215 PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 274
Query: 355 KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
K V L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 275 KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 334
Query: 415 DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
D+L GR++L EF P+FED I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 335 DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 394
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+RR +GGYSLEALT D KV+ + + + F+GKISMK IFG+RKLKKDGS
Sbjct: 395 ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 445
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
GKI I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL M W LDGKPV G++M
Sbjct: 446 EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 505
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 506 LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 565
Query: 655 YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
YMN+GSDTQLRQL FGG NS D E LP+E++FKVPN + VI EGKKTP+KFRNI L
Sbjct: 566 YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623
Query: 715 IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
I L TE +TA+GWPSVGGD LK LA +SAEYD +D D+
Sbjct: 624 ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683
Query: 758 DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
S +ET+ A + F + +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684 QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742
Query: 818 SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743 SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
ELRILAHL CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH GEDKPPV
Sbjct: 803 ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862
Query: 935 PLLKN 939
PLLK+
Sbjct: 863 PLLKD 867
>gi|22330154|ref|NP_175498.2| polymerase gamma 2 [Arabidopsis thaliana]
gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
Length = 1050
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/665 (63%), Positives = 506/665 (76%), Gaps = 32/665 (4%)
Query: 295 PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
PK +R + + A G S+ E S + +R L Y V++VDNV AA
Sbjct: 216 PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 275
Query: 355 KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
K V L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 276 KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 335
Query: 415 DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
D+L GR++L EF P+FED I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 336 DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 395
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+RR +GGYSLEALT D KV+ + + + F+GKISMK IFG+RKLKKDGS
Sbjct: 396 ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 446
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
GKI I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL M W LDGKPV G++M
Sbjct: 447 EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 506
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 507 LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 566
Query: 655 YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
YMN+GSDTQLRQL FGG NS D E LP+E++FKVPN + VI EGKKTP+KFRNI L
Sbjct: 567 YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 624
Query: 715 IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
I L TE +TA+GWPSVGGD LK LA +SAEYD +D D+
Sbjct: 625 ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 684
Query: 758 DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
S +ET+ A + F + +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 685 QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 743
Query: 818 SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 744 SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 803
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
ELRILAHL CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH GEDKPPV
Sbjct: 804 ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 863
Query: 935 PLLKN 939
PLLK+
Sbjct: 864 PLLKD 868
>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
Length = 1088
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/641 (67%), Positives = 498/641 (77%), Gaps = 34/641 (5%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S+ E L +R+ L Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 187 SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 246
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L GRD+L EF PFFED SIKKVWH
Sbjct: 247 TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 306
Query: 443 NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR GGYSLEALT D KV+ + +
Sbjct: 307 NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 366
Query: 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
++ GKISMK IFG+ KLKKDGS GK+ I PV+ELQ E+RE WISYSA D
Sbjct: 367 AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 417
Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
SI+TLKLY+S+KK+L W LDGK + K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 418 SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 477
Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG NS +D E L
Sbjct: 478 YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 536
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
P E++FKVPN + VI EGKK +KFRNI L I LPTE +TA+GWPSV GD LK LA
Sbjct: 537 PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 596
Query: 742 RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
+SAEYD ++G D + D C E +V S+ + T +A
Sbjct: 597 GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 656
Query: 786 ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
+EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 657 GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 716
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 717 PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 776
Query: 902 HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
HSRTAMNMYPHIR AVE G+VLLEWH G++KPPVPLLK+
Sbjct: 777 HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKD 817
>gi|357459413|ref|XP_003599987.1| DNA polymerase [Medicago truncatula]
gi|355489035|gb|AES70238.1| DNA polymerase [Medicago truncatula]
Length = 1112
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/627 (67%), Positives = 499/627 (79%), Gaps = 36/627 (5%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L S Y +++VV+N+S A++V MLT Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 316 LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 375
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 376 CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 435
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG VSGFHADTMHMARLWDSSRR GGYSLEAL+GD++VMS ++ D+
Sbjct: 436 YGFNVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 487
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
+GK+SM +FG+RK KKDGS GKI TI PVE LQREER WI YSA D+ +TLKLY+SL
Sbjct: 488 -IGKVSMTTLFGQRKEKKDGSMGKIVTIEPVEVLQREERIPWICYSALDARSTLKLYESL 546
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K L ++ WKLDG+ + ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 547 KSHLSDLPWKLDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 605
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG N K+ +E++
Sbjct: 606 EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLKNHNEAI 665
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
P ERIFKVPN + VI +GKK PSK R+I L SIG +L ++YT +GWPS G ALK LA
Sbjct: 666 PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 725
Query: 743 NISAEYDCVDGAHDL-DDSGCTEETEYK------GAVASNNKIFATEQEAREACDAISAL 795
+SAEYD DL D+ G + E + A + F TE+E REAC AI+AL
Sbjct: 726 KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 780
Query: 796 CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 781 CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 840
Query: 856 KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR
Sbjct: 841 KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 900
Query: 916 AVETGQVLLEWH---GEDKPPVPLLKN 939
AVE +VLLEWH GEDKPPVPLLK+
Sbjct: 901 AVEKKEVLLEWHPQPGEDKPPVPLLKD 927
>gi|334185498|ref|NP_001189942.1| polymerase gamma 1 [Arabidopsis thaliana]
gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
Length = 1049
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/641 (67%), Positives = 498/641 (77%), Gaps = 34/641 (5%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S+ E L +R+ L Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 237 SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 296
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L GRD+L EF PFFED SIKKVWH
Sbjct: 297 TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 356
Query: 443 NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR GGYSLEALT D KV+ + +
Sbjct: 357 NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 416
Query: 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
++ GKISMK IFG+ KLKKDGS GK+ I PV+ELQ E+RE WISYSA D
Sbjct: 417 AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 467
Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
SI+TLKLY+S+KK+L W LDGK + K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 468 SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 527
Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG NS +D E L
Sbjct: 528 YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 586
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
P E++FKVPN + VI EGKK +KFRNI L I LPTE +TA+GWPSV GD LK LA
Sbjct: 587 PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 646
Query: 742 RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
+SAEYD ++G D + D C E +V S+ + T +A
Sbjct: 647 GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 706
Query: 786 ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
+EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 707 GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 766
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 767 PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 826
Query: 902 HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
HSRTAMNMYPHIR AVE G+VLLEWH G++KPPVPLLK+
Sbjct: 827 HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKD 867
>gi|42565057|ref|NP_188690.3| polymerase gamma 1 [Arabidopsis thaliana]
gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
Length = 1034
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/641 (67%), Positives = 498/641 (77%), Gaps = 34/641 (5%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S+ E L +R+ L Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 222 SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 281
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L GRD+L EF PFFED SIKKVWH
Sbjct: 282 TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 341
Query: 443 NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR GGYSLEALT D KV+ + +
Sbjct: 342 NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 401
Query: 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
++ GKISMK IFG+ KLKKDGS GK+ I PV+ELQ E+RE WISYSA D
Sbjct: 402 AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 452
Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
SI+TLKLY+S+KK+L W LDGK + K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 453 SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 512
Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG NS +D E L
Sbjct: 513 YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 571
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
P E++FKVPN + VI EGKK +KFRNI L I LPTE +TA+GWPSV GD LK LA
Sbjct: 572 PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 631
Query: 742 RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
+SAEYD ++G D + D C E +V S+ + T +A
Sbjct: 632 GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 691
Query: 786 ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
+EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 692 GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 751
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 752 PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 811
Query: 902 HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
HSRTAMNMYPHIR AVE G+VLLEWH G++KPPVPLLK+
Sbjct: 812 HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKD 852
>gi|357459417|ref|XP_003599989.1| DNA polymerase [Medicago truncatula]
gi|355489037|gb|AES70240.1| DNA polymerase [Medicago truncatula]
Length = 1098
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/627 (67%), Positives = 499/627 (79%), Gaps = 36/627 (5%)
Query: 334 LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
LR +L S Y +++VV+N+S A++V MLT Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 302 LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 361
Query: 394 CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 362 CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 421
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
YG KVSGFHADTMHMARLWDSSRR GGYSLEAL+GD++VMS ++ D+
Sbjct: 422 YGFKVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 473
Query: 514 FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
+GK+SM IFG+RK KKDGS GKI TI PVE LQREE WI YSA D+ +TLKLY+SL
Sbjct: 474 -IGKVSMTTIFGQRKEKKDGSMGKIVTIEPVEVLQREEHIPWICYSALDARSTLKLYESL 532
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
K L ++ WK+DG+ + ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 533 KSHLSDLPWKIDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 591
Query: 634 EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG N ++ +E++
Sbjct: 592 EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLENHNEAI 651
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
P ERIFKVPN + VI +GKK PSK R+I L SIG +L ++YT +GWPS G ALK LA
Sbjct: 652 PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 711
Query: 743 NISAEYDCVDGAHDL-DDSGCTEETEYK------GAVASNNKIFATEQEAREACDAISAL 795
+SAEYD DL D+ G + E + A + F TE+E REAC AI+AL
Sbjct: 712 KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 766
Query: 796 CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 767 CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 826
Query: 856 KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR
Sbjct: 827 KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 886
Query: 916 AVETGQVLLEWH---GEDKPPVPLLKN 939
AVE +VLLEWH GEDKPPVPLLK+
Sbjct: 887 AVEKKEVLLEWHPQPGEDKPPVPLLKD 913
>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
Length = 1044
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/641 (66%), Positives = 498/641 (77%), Gaps = 34/641 (5%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S E L +R+ L Y+ V+VVDNVS+AK+ V ML N+Y++LVHACDTEV++IDVK
Sbjct: 232 SNVEKCTNLSKVRANLKKIYNRVLVVDNVSSAKETVAMLMNQYRNLVHACDTEVSRIDVK 291
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L GRD+L EF PFFED SIKKVWH
Sbjct: 292 TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 351
Query: 443 NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR GGYSLEALT D +V+ + +
Sbjct: 352 NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPRVLGGTETKEE 411
Query: 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
++ GKISMK IFG+ KLKKDGS GK+ I PV+ELQ E+RE WISYSA D
Sbjct: 412 AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 462
Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
SI+TLKLY+S+KK+L W LDG + ++MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 463 SISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAKMESEGMLVDRD 522
Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG NS +D E L
Sbjct: 523 YLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 581
Query: 683 PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
P E++FKVPN + VI +GKK +KFRNI L I LPTE +TA+GWPS+ GD LK LA
Sbjct: 582 PYEKLFKVPNVDKVIEKGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSISGDTLKALA 641
Query: 742 RNISAEYDCVDGAHD------LDDSGCTE------ETEYKGA-VASNNKIFATEQEA--- 785
+SAEYD +G D + D C ET++ V S+ + T +A
Sbjct: 642 GKVSAEYDYTEGVSDTCLEENIGDDDCISLPDEVLETQHSNTTVESDTSAYGTAFDAFGG 701
Query: 786 ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
+EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 702 GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 761
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+CKSM +AF AGGDF
Sbjct: 762 PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDF 821
Query: 902 HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
HSRTAMNMYPHIR AVE G+VLLEWH G++KPPVPLLK+
Sbjct: 822 HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKD 862
>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
lyrata]
gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
lyrata]
Length = 1047
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/663 (63%), Positives = 506/663 (76%), Gaps = 37/663 (5%)
Query: 297 LVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKK 356
L+S K S N + + +K++E N +R L Y V+VVDNV AAK
Sbjct: 220 LISGKSSGTANSNRNTV-AISKVEKSTEPSN------VRENLRKIYDKVLVVDNVQAAKD 272
Query: 357 VVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDL 416
V L N+Y++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFG GKSCIWVD+
Sbjct: 273 TVAKLVNQYRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGYGKSCIWVDV 332
Query: 417 LDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
L GR++L EF P+FED I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS+R
Sbjct: 333 LGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDSAR 392
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
R EGGYSLEALT D KV+ + + D F+GKISMK IFG+RKLKKDGS G
Sbjct: 393 RIEGGYSLEALTSDPKVLGGTQTKEEAD---------FLGKISMKTIFGKRKLKKDGSEG 443
Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
K+ I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL M W+LDGKPV ++M D
Sbjct: 444 KMVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQMMDWRLDGKPVLERTMLD 503
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
FY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAKYM
Sbjct: 504 FYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYM 563
Query: 657 NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
N+GSDTQLRQL FGG NS + E LP+E++FK+PN + VI GKKT +KFRNI L I
Sbjct: 564 NIGSDTQLRQLFFGGISNSVN-GEVLPVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRIS 622
Query: 717 -VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL--------DDSGCTEETE 767
L TE TA+GWPS+ GD LK LA +SAEYD ++ D+ +D+ T +T+
Sbjct: 623 DSPLSTENLTASGWPSISGDVLKELAGKVSAEYDFMEDVSDISLEEVAEDNDADQTSKTQ 682
Query: 768 -YKGAVASNNKI-------FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSG 819
K V ++ F + +EAC AI++LCEVCSID+LISNFILPLQGSNVSG
Sbjct: 683 KSKTDVQTDTSAYGIAYVAFGGGERGKEACHAIASLCEVCSIDALISNFILPLQGSNVSG 742
Query: 820 KNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
K+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQLEL
Sbjct: 743 KDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQLEL 802
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPL 936
RILAHL CKSM++AFKAGGDFHSRTAMNMYPHIR AVE GQV+LEWH GEDKPPVPL
Sbjct: 803 RILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREAVENGQVILEWHPQPGEDKPPVPL 862
Query: 937 LKN 939
LK+
Sbjct: 863 LKD 865
>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
Length = 1032
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/615 (66%), Positives = 486/615 (79%), Gaps = 25/615 (4%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LA+ Y V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249 RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308
Query: 395 FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
FSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309 FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM K QK
Sbjct: 368 ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
+GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420 ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
SLK KL + W DG P SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477 SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534
Query: 632 RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG N E+LP R KVP
Sbjct: 535 VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594
Query: 692 NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
N +IAEGKKTP K+R I L SI DL T+++TA+GWPSV GDAL++LA + +
Sbjct: 595 NDGSLIAEGKKTP-KYRTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653
Query: 752 DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
+ DDSG +E +E+ + + + F ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654 TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713
Query: 808 FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
FILPLQG+++S GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714 FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 773
Query: 868 SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE +VLLEWH
Sbjct: 774 SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 833
Query: 928 ---GEDKPPVPLLKN 939
G++KPPVPLLK+
Sbjct: 834 PQPGQEKPPVPLLKD 848
>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
Length = 885
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/615 (66%), Positives = 485/615 (78%), Gaps = 25/615 (4%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LA+ Y V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 102 RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 161
Query: 395 FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
FSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 162 FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 220
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM K QK
Sbjct: 221 ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 272
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
+GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 273 ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 329
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
SLK KL + W DG P SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 330 SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 387
Query: 632 RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG N E+LP R KVP
Sbjct: 388 VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 447
Query: 692 NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
N +IAEGKKTP K+ I L SI DL T+++TA+GWPSV GDAL++LA + +
Sbjct: 448 NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 506
Query: 752 DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
+ DDSG +E +E+ + + + F ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 507 TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 566
Query: 808 FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
FILPLQG+++S GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 567 FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 626
Query: 868 SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE +VLLEWH
Sbjct: 627 SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 686
Query: 928 ---GEDKPPVPLLKN 939
G++KPPVPLLK+
Sbjct: 687 PQPGQEKPPVPLLKD 701
>gi|413919673|gb|AFW59605.1| chloroplast DNA polymerase [Zea mays]
Length = 1033
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/639 (63%), Positives = 485/639 (75%), Gaps = 29/639 (4%)
Query: 314 EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
E T Q + + E L+ R L++ Y V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 227 EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 285
Query: 374 TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
TEVA I+VKQETPV HG+V CFSIYSG EADFGNGK+CIWVD+LDGG D+L EF P
Sbjct: 286 TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 344
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 345 FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 404
Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
+VM K QK +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 405 HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 453
Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
+RELWI YS+ DS++TL+LY+SLK KL W DG P PG S++DFY+EYW PFG ILV
Sbjct: 454 DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 513
Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 514 KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 573
Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
G N + LP + KVPN E ++EGKK P K+R I L SI DL T+++TA+GWP
Sbjct: 574 GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 632
Query: 731 SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
SV G AL+ LA + + D V D++D C +E + + F +
Sbjct: 633 SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 690
Query: 784 EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 691 EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 750
Query: 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
LQNQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHS
Sbjct: 751 LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHS 810
Query: 904 RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
RTAMNMY HIR AVE +V+LEWH G++KPPVPLLK+
Sbjct: 811 RTAMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKD 849
>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
Length = 1178
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/614 (65%), Positives = 473/614 (77%), Gaps = 24/614 (3%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LAS Y V+VVDN+ +A+ +V +LT KYK +HACDTEVA I+ K+ETPV HGEVIC
Sbjct: 396 RKALASIYDKVLVVDNIESARSIVKLLTTKYKSFIHACDTEVANIEAKEETPVGHGEVIC 455
Query: 395 FSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHV 450
FSIYS ADFGNGK+CIWVD+LDGG R +L EFAPFFEDPSIKKVWHNYSFDNHV
Sbjct: 456 FSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAPFFEDPSIKKVWHNYSFDNHV 514
Query: 451 LENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNT 510
+ENYG+KV+GF ADTMH+ARLWDSSR+ +GGYSLE LT DR+VM +D+ K
Sbjct: 515 IENYGIKVAGFRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMD----TVPEDLPKP-- 568
Query: 511 DEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570
GKISMK IFGR+K++KDGS GK+ +I PV+ELQRE+RELWI YS+ DS++TL+LY
Sbjct: 569 -----GKISMKTIFGRKKVRKDGSEGKVVSIDPVKELQREDRELWICYSSLDSMSTLRLY 623
Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKV 630
+SLK+KL W LDG P +M+DFY++YW PFG +LVKMETEGMLVDR YLSEIEK
Sbjct: 624 ESLKRKLETRRWVLDG--CPRGTMYDFYEQYWCPFGALLVKMETEGMLVDRGYLSEIEKA 681
Query: 631 ARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKV 690
A AE+E A ++FRKWASK+CPDAKYMNV SDTQ+RQLLFGG N E+ P + FKV
Sbjct: 682 AIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIENRHKSGETWPQSKTFKV 741
Query: 691 PNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC 750
N E V EGKKT SK+R I L SI DL T+M+T +GWPS GDAL++LA I EY
Sbjct: 742 LNEENVATEGKKT-SKYRTIKLCSIVEDLKTDMFTPSGWPSASGDALRSLAGKIPTEYIY 800
Query: 751 VDG--AHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
G D +DS +E + + + + F + +EAC AI+ALCE+CSIDSLISNF
Sbjct: 801 TMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAIAALCEICSIDSLISNF 860
Query: 809 ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
ILPLQG +S GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGNS
Sbjct: 861 ILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNS 920
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH- 927
LIVADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV +VLLEWH
Sbjct: 921 LIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVHEKKVLLEWHP 980
Query: 928 --GEDKPPVPLLKN 939
G++KPPVPLLK+
Sbjct: 981 QPGQEKPPVPLLKD 994
>gi|357162284|ref|XP_003579362.1| PREDICTED: uncharacterized protein LOC100823216 [Brachypodium
distachyon]
Length = 1031
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/623 (64%), Positives = 478/623 (76%), Gaps = 26/623 (4%)
Query: 328 SEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPV 387
S++ E R LA+ Y V+VVD V +A+ VV +LT KYK +HACDTEVA IDVKQETPV
Sbjct: 240 SKEAEDARKALATIYDKVLVVDTVKSARSVVQLLTTKYKSFIHACDTEVANIDVKQETPV 299
Query: 388 DHGEVICFSIY---SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY 444
HGE+ CFSIY S EADFGNGK CIWVD+LDGG RD+L EF PFFEDPSI+KVWHNY
Sbjct: 300 GHGEITCFSIYCASSDAEADFGNGKKCIWVDVLDGG-RDVLMEFVPFFEDPSIRKVWHNY 358
Query: 445 SFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKD 504
SFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM K Q
Sbjct: 359 SFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDSRVMGAVPKELQN- 417
Query: 505 MSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSI 564
+GK SMK IFGR+K+KKDG+ GKI++I V+ LQRE+RELWISYS+ DS+
Sbjct: 418 ----------IGKRSMKTIFGRKKIKKDGTEGKITSIESVDILQREDRELWISYSSLDSM 467
Query: 565 NTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
+TL+LY+SLK KL + W DG P SM+DFY+EYW+PFG ILVKMET GMLVDR YL
Sbjct: 468 STLRLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGAILVKMETAGMLVDRSYL 525
Query: 625 SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
SEIEKVA A+++ A ++F+KWASKHCPDAKYMNV SDTQ+RQL FGG N E LP
Sbjct: 526 SEIEKVAVAQRKLAADKFQKWASKHCPDAKYMNVNSDTQIRQLFFGGIENRCKPGEFLPK 585
Query: 685 ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLA--- 741
R KVPN + + EGKK P K+R I L SI DL T+++TA+GWPSV GDAL+ LA
Sbjct: 586 SRAIKVPNDDNTVTEGKKAP-KYRTIELFSIVEDLKTDIFTASGWPSVSGDALRNLAGKL 644
Query: 742 -RNISAEYDCVDGAHDLDDSGCTEE-TEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
+++ D +G DS +E+ E + + + F ++ +EAC AI+ALCE+C
Sbjct: 645 KTDLAYPMDDAEGDRYGSDSEISEDDVEDTTSYGTAYEAFGGGRKGKEACYAIAALCEIC 704
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
SIDSLISNFILPLQG+ +S GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQ
Sbjct: 705 SIDSLISNFILPLQGNRISCNEGRIHCSLNINTETGRLSARAPNLQNQPALEKDRYKIRQ 764
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
AF+A PGNSLIVADYGQLELRILAHLA+C+SMLDAFKAGGDFHSRTAMNMY HIR+AVE
Sbjct: 765 AFVAAPGNSLIVADYGQLELRILAHLADCRSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE 824
Query: 920 GQVLLEWH---GEDKPPVPLLKN 939
VLLEWH G++KPPVPLLK+
Sbjct: 825 KTVLLEWHPQPGQEKPPVPLLKD 847
>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
Length = 1033
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/630 (63%), Positives = 478/630 (75%), Gaps = 33/630 (5%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 241 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSI SG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 295 KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 353
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM
Sbjct: 354 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMD--- 410
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+K++KDGS GK +I PVE+LQRE+RELWI Y
Sbjct: 411 -AVVKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W D P +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463 SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 521 VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
E+ P + FKVPN EG+ EGKKTP K R I L +I DL +M+T TGWPSV GD L+
Sbjct: 581 GETWPQSKTFKVPNDEGITTEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639
Query: 739 TLARNI-SAEYDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
+LA I + +D + D+ G + ++ E + + F + REAC AI
Sbjct: 640 SLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREACHAI 699
Query: 793 SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
+ALCEV SID LIS FI+PLQG +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700 AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
DRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760 DRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819
Query: 913 IRNAVETGQVLLEWH---GEDKPPVPLLKN 939
+R+AVE +VLLEWH G++KPPVPLLK+
Sbjct: 820 VRDAVEEKKVLLEWHPQPGQEKPPVPLLKD 849
>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
Length = 1033
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/630 (63%), Positives = 477/630 (75%), Gaps = 33/630 (5%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 241 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSI SG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 295 KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 353
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM
Sbjct: 354 KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 410
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+K++KDGS GK +I PVE+LQRE+RELWI Y
Sbjct: 411 -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W D P +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463 SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 521 VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
E+ P + FKVPN EG+ EGKKTP K R I L +I DL +M+T TGWPSV GD L+
Sbjct: 581 GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639
Query: 739 TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
+LA I ++ +D + D+ G + ++ E + + F ++ REAC AI
Sbjct: 640 SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 699
Query: 793 SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
+ALCEV SID LIS FI+PLQG +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700 AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760 DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819
Query: 913 IRNAVETGQVLLEWH---GEDKPPVPLLKN 939
+R+AVE +VLLEWH G+DKPPVPLLK+
Sbjct: 820 VRDAVEEKKVLLEWHPQPGQDKPPVPLLKD 849
>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
Length = 976
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/630 (63%), Positives = 476/630 (75%), Gaps = 33/630 (5%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 184 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSI SG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 238 KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 296
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM
Sbjct: 297 KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 353
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+K++KDGS GK +I PVE+LQRE+RELWI Y
Sbjct: 354 -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 405
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W D P +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 406 SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 463
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 464 VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 523
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
E+ P + FKVPN EG+ EGKKTP K R I L +I DL +M+T TGWPSV GD L+
Sbjct: 524 GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 582
Query: 739 TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
+LA I ++ +D + D+ G + ++ E + + F ++ REAC AI
Sbjct: 583 SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 642
Query: 793 SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
+ALCEV SID LIS FI+PLQG +S K GR+HCSLNINTETGRLSAR PNLQNQP LEK
Sbjct: 643 AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPVLEK 702
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 703 DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 762
Query: 913 IRNAVETGQVLLEWH---GEDKPPVPLLKN 939
+R+AVE +VLLEWH G+DKPPVPLLK+
Sbjct: 763 VRDAVEEKKVLLEWHPQPGQDKPPVPLLKD 792
>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
Length = 1028
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/635 (62%), Positives = 474/635 (74%), Gaps = 38/635 (5%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 231 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 284
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSI SG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 285 KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 343
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFDNHV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+
Sbjct: 344 KVWHNYSFDNHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 400
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+K++K+GS GK +I PVE+LQRE+RELWI Y
Sbjct: 401 -AVLKDIHK-------TGKVSMKTIFGRKKVRKNGSEGKTISIEPVEKLQREDRELWICY 452
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W DG P +M+DFY+EYW+PFG +LVKMETEGML
Sbjct: 453 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGML 510
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 511 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 570
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
E+ P + FKVPN E + EGKKT SK R I L +I DL + T TGW V
Sbjct: 571 GETWPQSKTFKVPNDESIATEGKKT-SKSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 629
Query: 734 GDALKTLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEARE 787
GD L +LA I ++ +D + D+ G + ++ E + + F ++ RE
Sbjct: 630 GDVLWSLAGKIPTDHIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAYEAFGGGKKGRE 689
Query: 788 ACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQ 847
AC AI+ALCE SID LIS FI+PLQG +S K GR+HCSLNINTETGRLSAR PNLQNQ
Sbjct: 690 ACHAIAALCEAFSIDKLISGFIIPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQ 749
Query: 848 PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
PALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAM
Sbjct: 750 PALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 809
Query: 908 NMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
NMY H+R+AVE +VLLEWH G+DKPPVPLLK+
Sbjct: 810 NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKD 844
>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
Length = 982
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/636 (62%), Positives = 473/636 (74%), Gaps = 39/636 (6%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 184 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 238 KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 296
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+
Sbjct: 297 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 353
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+ ++K+GS GK +I PV++LQRE+RELWI Y
Sbjct: 354 -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 405
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W DG P +M+DFY+EYW+PFG +LVKMETEGM
Sbjct: 406 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 463
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 464 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 523
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
E+ P + FKVPN E + EGKK P K R I L +I DL + T TGW V
Sbjct: 524 GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 582
Query: 734 GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
GD L +LA I + Y D + D+ G + ++ E + + F ++ R
Sbjct: 583 GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 642
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 643 EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 702
Query: 847 QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 703 QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 762
Query: 907 MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
MNMY H+R+AVE +VLLEWH G+DKPPVPLLK+
Sbjct: 763 MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKD 798
>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
Length = 1035
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/636 (62%), Positives = 473/636 (74%), Gaps = 39/636 (6%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 237 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291 KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+
Sbjct: 350 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+ ++K+GS GK +I PV++LQRE+RELWI Y
Sbjct: 407 -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W DG P +M+DFY+EYW+PFG +LVKMETEGM
Sbjct: 459 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
VDR YLSEIEK A E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG N
Sbjct: 517 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 576
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
E+ P + FKVPN E + EGKK P K R I L +I DL + T TGW V
Sbjct: 577 GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 635
Query: 734 GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
GD L +LA I + Y D + D+ G + ++ E + + F ++ R
Sbjct: 636 GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 695
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 696 EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 755
Query: 847 QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 756 QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 815
Query: 907 MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
MNMY H+R+AVE +VLLEWH G+DKPPVPLLK+
Sbjct: 816 MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKD 851
>gi|356573597|ref|XP_003554944.1| PREDICTED: uncharacterized protein LOC100787569 [Glycine max]
Length = 1521
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/535 (69%), Positives = 427/535 (79%), Gaps = 21/535 (3%)
Query: 417 LDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
LDGGG+++L +FA FF D SIKKVWHNYSFD HV+ENYG KVSGFHADTMHMARLWDSSR
Sbjct: 783 LDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSR 842
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
+GGYSLE LTGDR+VMS + ++KD+ +GK+SMK IF ++KLKKDGS G
Sbjct: 843 HLDGGYSLEGLTGDRRVMSRAQLNHEKDL---------IGKVSMKTIFSKKKLKKDGSEG 893
Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
K S IAPVEELQR+ER WI YSA D+ +TLKLY+SLK L +M WK DG PV GK+M+D
Sbjct: 894 KTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGVPVYGKTMYD 953
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
FY EYW+PFGE+LV ME+EGMLVDR YL IEKVA+ EQE AVNRFRKWA+++CPDA+YM
Sbjct: 954 FYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKEEQEVAVNRFRKWATRYCPDAQYM 1013
Query: 657 NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
NVGSD+QLRQLLFGG N KD +++LP ERIFK+PN VI EGKK P +F +I L S+G
Sbjct: 1014 NVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNVNNVIEEGKKAPKRFCDIKLTSLG 1073
Query: 717 VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV--DGAHDLDD-------SGCTEETE 767
+L TEMYTATGWPSV G ALK LA +ISA+YD D DLDD S
Sbjct: 1074 YNLETEMYTATGWPSVSGHALKALAGSISADYDFFDEDCNLDLDDEDENPSQSEVAPVKI 1133
Query: 768 YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
K A + F TE+E REAC AI+ALC+VCSI+SLISNFILPLQG N+SGK+ RVHCS
Sbjct: 1134 DKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCS 1193
Query: 828 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+
Sbjct: 1194 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLAD 1253
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
CKSML+AF+AGGDFHSRTAMNMYPHIR A+E +VLLEWH GEDKPPVPLLK+
Sbjct: 1254 CKSMLEAFEAGGDFHSRTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKD 1308
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 91/99 (91%), Gaps = 3/99 (3%)
Query: 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
LQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHS
Sbjct: 1360 LQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHS 1419
Query: 904 RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
RTAMNMYPHIR A+E +VLLEWH GEDKPPVPLLK+
Sbjct: 1420 RTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKD 1458
>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
Length = 1000
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/615 (62%), Positives = 457/615 (74%), Gaps = 57/615 (9%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LA+ Y V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249 RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308
Query: 395 FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
FSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309 FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM K QK
Sbjct: 368 ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
+GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420 ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
SLK KL + W DG P SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477 SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534
Query: 632 RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG N E+LP R KVP
Sbjct: 535 VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594
Query: 692 NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
N +IAEGKKTP K+ I L SI DL T+++TA+GWPSV GDAL++LA + +
Sbjct: 595 NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653
Query: 752 DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
+ DDSG +E +E+ + + + F ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654 TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713
Query: 808 FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
FILP LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714 FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 741
Query: 868 SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE +VLLEWH
Sbjct: 742 SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 801
Query: 928 ---GEDKPPVPLLKN 939
G++KPPVPLLK+
Sbjct: 802 PQPGQEKPPVPLLKD 816
>gi|413917188|gb|AFW57120.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
Length = 715
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/573 (64%), Positives = 441/573 (76%), Gaps = 24/573 (4%)
Query: 375 EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
+VA I+ K+ETPV HGEVICFSIYS ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4 QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63 FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122
Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
R+VM +D+ K GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123 RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171
Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
+RELWI YS+ DS++TL+LY SLK KL W LDG P +M+DFY++YW+PFG +LV
Sbjct: 172 DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229
Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230 KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289
Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
G N E+ P + FKV N E V EGKKT SK+R I L SI DL +M+T +GWP
Sbjct: 290 GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348
Query: 731 SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
+V GDAL++LA I EY +D D D+ + +E + + + + F + +EA
Sbjct: 349 TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408
Query: 789 CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
C AI+ALCE+CSIDSLISNFILPLQG ++S GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409 CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469 ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528
Query: 909 MYPHIRNAVETGQVLLEWH---GEDKPPVPLLK 938
MY HIR+AV+ +VLLEWH G++KPPVPLLK
Sbjct: 529 MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK 561
>gi|413917189|gb|AFW57121.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
Length = 647
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/573 (64%), Positives = 441/573 (76%), Gaps = 24/573 (4%)
Query: 375 EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
+VA I+ K+ETPV HGEVICFSIYS ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4 QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63 FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122
Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
R+VM +D+ K GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123 RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171
Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
+RELWI YS+ DS++TL+LY SLK KL W LDG P +M+DFY++YW+PFG +LV
Sbjct: 172 DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229
Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230 KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289
Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
G N E+ P + FKV N E V EGKKT SK+R I L SI DL +M+T +GWP
Sbjct: 290 GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348
Query: 731 SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
+V GDAL++LA I EY +D D D+ + +E + + + + F + +EA
Sbjct: 349 TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408
Query: 789 CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
C AI+ALCE+CSIDSLISNFILPLQG ++S GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409 CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469 ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528
Query: 909 MYPHIRNAVETGQVLLEWH---GEDKPPVPLLK 938
MY HIR+AV+ +VLLEWH G++KPPVPLLK
Sbjct: 529 MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK 561
>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
Length = 992
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/615 (60%), Positives = 449/615 (73%), Gaps = 61/615 (9%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LA+ Y V+VVDNV +A+ VV +LT KY++ +HACDTEV IDVKQETPV HG+V C
Sbjct: 245 RKALATIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACDTEV-DIDVKQETPVGHGKVTC 303
Query: 395 FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
FSIYSG EADFGNGK+CIWVD+LDGG D+L EFAPFFED SI+KVWHNYSFD+HV+
Sbjct: 304 FSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFAPFFEDSSIRKVWHNYSFDSHVI 362
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM K +K
Sbjct: 363 ENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRK-------- 414
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
+GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE+RELWI YS+ DS++TLKLY+
Sbjct: 415 ---IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRELWICYSSLDSMSTLKLYE 471
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
SLK KL W DG P S++DFY+EYW+PFG ILVKMET GMLVDR YLSEIEKVA
Sbjct: 472 SLKSKLERKPWTFDG--CPRGSLYDFYEEYWRPFGAILVKMETAGMLVDRAYLSEIEKVA 529
Query: 632 RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
A+++ A ++FR WASK+CPDAKYMNV SDTQ+RQL FGG N + LP + KVP
Sbjct: 530 VAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIENICKPGDFLPKSKAIKVP 589
Query: 692 NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE--YD 749
N E ++EGKK P K+R I L +I DL T+++TA+GWPSV GDAL+ LA + ++ Y
Sbjct: 590 NDETAVSEGKKVP-KYRTIELFNIVEDLKTDIFTASGWPSVSGDALRNLAGKVPSDLVYS 648
Query: 750 CVD--GAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
D G+H + S C + E + + F +E +EAC AI+ALCE+CSIDSLISN
Sbjct: 649 TDDECGSHS-EISNC--DLEDTSSYGTAYDAFGGGKEGKEACHAIAALCEICSIDSLISN 705
Query: 808 FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
FILP LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 706 FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 733
Query: 868 SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
+LIVADYGQLELRILAHLA+CKSMLDAF+AGGDFHSRTAMNMYPHIR AV+ +V+LEWH
Sbjct: 734 TLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEEKVILEWH 793
Query: 928 ---GEDKPPVPLLKN 939
G++KPPVPLLK+
Sbjct: 794 PQPGQEKPPVPLLKD 808
>gi|357139699|ref|XP_003571415.1| PREDICTED: uncharacterized protein LOC100833898 [Brachypodium
distachyon]
Length = 986
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/621 (60%), Positives = 455/621 (73%), Gaps = 40/621 (6%)
Query: 335 RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
R LA Y V+VVD++ +AK VV +LT KYK+ VHAC TEV IDVK+ETPVDHGEVIC
Sbjct: 207 RKALAGIYDKVLVVDSIESAKNVVQLLTTKYKNFVHACGTEVTNIDVKEETPVDHGEVIC 266
Query: 395 FSIYS---GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
FSIYS G +ADFGNGK+CIWVD+LDG RD+L EFAPFFEDPSIKKVWHNYSFD+HV+
Sbjct: 267 FSIYSENSGSQADFGNGKTCIWVDVLDGQ-RDVLMEFAPFFEDPSIKKVWHNYSFDSHVI 325
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
EN +KV GFHADT H+ARLW+S+R+T+GGYSLE L+ D +VM++ KD+S+
Sbjct: 326 ENCRIKVDGFHADTRHLARLWNSNRKTDGGYSLEGLSNDHRVMTD----VPKDLSE---- 377
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
+GK S K IFG++K++KDG+ GKI + PVE+LQRE+R +WI YS+ DS+NTLKLY+
Sbjct: 378 ---IGKASKKTIFGKKKIRKDGAEGKIVNVEPVEKLQREDRNMWICYSSRDSMNTLKLYE 434
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
SLK KL W DG P +M+DFY+EY +PFG +LVKME EGMLVDR YLSEIEK+A
Sbjct: 435 SLKSKLEAKEWIFDG--CPRGTMYDFYEEYLRPFGALLVKMEREGMLVDRGYLSEIEKIA 492
Query: 632 RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
AE+ A ++FRKWASK+CPDAKYMN+ SD Q+ QL F G+ N E+LP + F+VP
Sbjct: 493 VAERNLAADKFRKWASKYCPDAKYMNINSDAQILQLFFAGRENRDTPGETLPQSKTFRVP 552
Query: 692 NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISA----- 746
N + V EGK+T SKFR I L I V+ P +++ SV D LKT I
Sbjct: 553 NDQSVAPEGKRT-SKFRTIKLCGI-VENPEVTFSS----SVSLDTLKTWPGKIPTDQIYR 606
Query: 747 -----EYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSI 801
E+D +L D E + Y A ++F ++ +EAC AI+AL E SI
Sbjct: 607 TDDDQEHDEYSNGSELPDQDVEEVSLYGTAY----EVFGGGKKGKEACHAIAALFETRSI 662
Query: 802 DSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF 861
LIS+FI+PLQ ++S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF
Sbjct: 663 AKLISSFIVPLQEDHISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAF 722
Query: 862 IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
+A PGNSL+VADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV +
Sbjct: 723 VAAPGNSLVVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYEHIRDAVHEKK 782
Query: 922 VLLEWH---GEDKPPVPLLKN 939
VLLEWH G++KPPVPLLK+
Sbjct: 783 VLLEWHPQPGQEKPPVPLLKD 803
>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/615 (57%), Positives = 452/615 (73%), Gaps = 28/615 (4%)
Query: 346 MVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADF 405
MV+D+V AK VV L +YK VHACDTEVA+IDVK+E+PV HG + CFSIY GP A+F
Sbjct: 1 MVIDSVDKAKMVVKQLMREYKDAVHACDTEVAEIDVKKESPVGHGRMTCFSIYCGPSANF 60
Query: 406 GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADT 465
GNGK+ +WVD+LDGG +L F +FEDPSIKKVWHNYSFD H+L +G+ GF+ADT
Sbjct: 61 GNGKNRLWVDVLDGGD-GILEVFRRYFEDPSIKKVWHNYSFDKHILSRHGIHPQGFYADT 119
Query: 466 MHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
MH+ARL DS+RR +GGYSLE L+ D KVM Y +++ + D +GK SMK++F
Sbjct: 120 MHLARLHDSARRGAKGGYSLEVLSADEKVMD----GYLGHLTEED-DITLVGKKSMKELF 174
Query: 525 GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
G+ LKKDGS GKI TI PV+ELQR E R+ WI YS FD++ T +L+ SL+ KL W
Sbjct: 175 GKANLKKDGSPGKIKTIPPVDELQRDGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPW 234
Query: 583 KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRF 642
+ G SM+DFY++YW+PFGE+LV+ME +GMLVD ++L+ +EKVARA+QE +V+RF
Sbjct: 235 NVVDLKEKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRF 293
Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKK 702
RKWA+K+CPDA MNVGSD Q+RQ LFGG N K+ + LP+ER+F VPNT+G I EGKK
Sbjct: 294 RKWAAKYCPDAAMMNVGSDAQIRQFLFGGTANRKNAEQVLPMERVFSVPNTDGFIEEGKK 353
Query: 703 TPSKFRNITLRSIG---VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG---AHD 756
+ R I +R + + +P E YT++GWP+VGG A+K LA ++ +Y ++ D
Sbjct: 354 VAKQTRPIVIRGLANFNIRIPVETYTSSGWPAVGGAAIKALAGKVAIDYAALEEDSEVED 413
Query: 757 LDDSGCTE--------ETEYKGAVASNNKI---FATEQEAREACDAISALCEVCSIDSLI 805
+DD +E ETE++ ++ K F E +EAC A++ALCEV SI++L+
Sbjct: 414 MDDIEESESLLTSAGVETEHEEDLSVYGKAYQAFGGGLEGKEACMALAALCEVASINTLL 473
Query: 806 SNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
SNFI PLQG+++ S +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+A
Sbjct: 474 SNFIEPLQGNDIKSASDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFVAA 533
Query: 865 PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
PG SL+VADYGQLELR+LAHLA+CKSM AFKAGGDFHSRTAMNMYPH+R AVE +VLL
Sbjct: 534 PGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKERVLL 593
Query: 925 EWHGEDKPPVPLLKN 939
EW KPP PLLK+
Sbjct: 594 EWESHGKPPAPLLKD 608
>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 808
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/617 (56%), Positives = 457/617 (74%), Gaps = 28/617 (4%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
+VM+VD+V A+ VV L ++YK++VHACDTEVA IDVK+E+PV HG++ CFSIY GP A
Sbjct: 14 SVMIVDSVEKAEMVVEQLMSEYKNVVHACDTEVAGIDVKKESPVGHGQITCFSIYCGPGA 73
Query: 404 DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
DFG GK+ +WVD+LDGG D+L F +FEDPSI+KVWHNYSFD H+L +G+ GF+A
Sbjct: 74 DFGYGKNRLWVDVLDGGD-DVLRVFKRYFEDPSIQKVWHNYSFDKHILSRHGIHPQGFYA 132
Query: 464 DTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
DTMH+ARL DS+RR ++GGY+LE L+ DRKVM K + ++ G+ F+GK SMK+
Sbjct: 133 DTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEE--DGSV---FVGKKSMKE 187
Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEM 580
+FG+ KLKKDG+ GKI + PV+ELQR+E R+ WI YS D++ T +L+ SL+ KL
Sbjct: 188 LFGKAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNT 247
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
W + G SM+DFY++YW+PFGE+LV+ME GMLVD ++L+ +EK+ARA+Q+ +V+
Sbjct: 248 PWSVAELRHKG-SMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVS 306
Query: 641 RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
RFRKWA+++CP+A MNVGSD Q+RQ LFGG N KD ++LP+ER+F PNT+G I EG
Sbjct: 307 RFRKWAARYCPNAARMNVGSDAQIRQFLFGGTANRKDADQALPMERVFSTPNTDGFIEEG 366
Query: 701 KKTPSKFRNITLRSI---GVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC------- 750
KK K + + + + G+ +P E YT++GWP+VGG A++ LA +S +Y
Sbjct: 367 KKIAKKTKPMVITGLANHGIKIPVETYTSSGWPAVGGAAIRALAGKVSIDYSDIDDDAAE 426
Query: 751 ----VDGAHDLDDSGCTEETEYK---GAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
VD ++ + ET+++ K F QE +EAC A++ALCEV SI++
Sbjct: 427 GVLEVDTEPEVSLTSAGVETDHEEDLSVYGKAYKAFLGGQEGKEACMALAALCEVASINT 486
Query: 804 LISNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
L+SNFI PLQG+++ S +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+
Sbjct: 487 LLSNFIEPLQGNDIKSVSDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFV 546
Query: 863 AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
A PG +L+VADYGQLELR+LAHLA+CKSM AF AGGDFHSRTAMNMYPH+R AVE +V
Sbjct: 547 AAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKDRV 606
Query: 923 LLEWHGEDKPPVPLLKN 939
LLEW G +KPPVPLLK+
Sbjct: 607 LLEWEGLEKPPVPLLKD 623
>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
Length = 788
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/626 (55%), Positives = 439/626 (70%), Gaps = 51/626 (8%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
+++VV+ +A+KVV +L KYK VHACDTEVA IDVK+E+PV HG++ CFSIY G
Sbjct: 2 DILVVETEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61
Query: 404 DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
DFG GKS +WVDLL+GG +L+ F P+FE+ IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62 DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120
Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
DTMH+ARLWDS+R G YSLEALT D KVM D + Q GK SMKD+
Sbjct: 121 DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165
Query: 524 FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
F +KKDGS GK+ I PVEELQ ++ R+ WI YSA DS+ T L+ SLKKKLL+ S
Sbjct: 166 FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLLKAS 225
Query: 582 WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
W ++G +M+ FY+ YW+ FG++LV+ME EGM VD +L+E+EKVA +++ +V+R
Sbjct: 226 WYMEGDK--RGNMYQFYELYWRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283
Query: 642 FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
F+KWAS++CPDA YMNV SD Q+RQ+LFGG N KD S S P ER FKVPN++ + G
Sbjct: 284 FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343
Query: 702 KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
KT K+R+I+L I V LP E +T +GWP+V G LK+LA N+ +
Sbjct: 344 KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403
Query: 746 AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
+ + G D + + Y A + F +E ++AC AI+ALCE+ SID+LI
Sbjct: 404 STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459
Query: 806 SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
SNFI PLQ + G +GRVHCSLNINTETGRLSARRPNLQ NQPALEKDR
Sbjct: 460 SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519
Query: 855 YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520 YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579
Query: 915 NAVETGQVLLEWHGEDKPPVPLLKNK 940
AVETG+VLLEW GE K PVPLLK+K
Sbjct: 580 KAVETGEVLLEWSGEGKSPVPLLKDK 605
>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
Length = 788
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/626 (55%), Positives = 439/626 (70%), Gaps = 51/626 (8%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
+++VV+N +A+KVV +L KYK VHACDTEVA IDVK+E+PV HG++ CFSIY G
Sbjct: 2 DILVVENEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61
Query: 404 DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
DFG GKS +WVDLL+GG +L+ F P+FE+ IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62 DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120
Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
DTMH+ARLWDS+R G YSLEALT D KVM D + Q GK SMKD+
Sbjct: 121 DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165
Query: 524 FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
F +KKDGS GK+ I PVEELQ ++ R+ WI YSA DS+ T L+ SLKKKL + S
Sbjct: 166 FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLQKAS 225
Query: 582 WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
W ++G +M+ FY+ YW+ FG++LV+ME EGM VD +L+E+EKVA +++ +V+R
Sbjct: 226 WYMEGDK--RGNMYQFYELYWRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283
Query: 642 FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
F+KWAS++CPDA YMNV SD Q+RQ+LFGG N KD S S P ER FKVPN++ + G
Sbjct: 284 FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343
Query: 702 KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
KT K+R+I+L I V LP E +T +GWP+V G LK+LA N+ +
Sbjct: 344 KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403
Query: 746 AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
+ + G D + + Y A + F +E ++AC AI+ALCE+ SID+LI
Sbjct: 404 STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459
Query: 806 SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
SNFI PLQ + G +GRVHCSLNINTETGRLSARRPNLQ NQPALEKDR
Sbjct: 460 SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519
Query: 855 YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520 YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579
Query: 915 NAVETGQVLLEWHGEDKPPVPLLKNK 940
AVETG+VLLEW GE K PVPLLK+K
Sbjct: 580 KAVETGEVLLEWSGEGKSPVPLLKDK 605
>gi|413919674|gb|AFW59606.1| chloroplast DNA polymerase [Zea mays]
Length = 1154
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/542 (59%), Positives = 396/542 (73%), Gaps = 26/542 (4%)
Query: 314 EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
E T Q + + E L+ R L++ Y V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 197 EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 255
Query: 374 TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
TEVA I+VKQETPV HG+V CFSIYSG EADFGNGK+CIWVD+LDGG D+L EF P
Sbjct: 256 TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 314
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 315 FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 374
Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
+VM K QK +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 375 HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 423
Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
+RELWI YS+ DS++TL+LY+SLK KL W DG P PG S++DFY+EYW PFG ILV
Sbjct: 424 DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 483
Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 484 KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 543
Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
G N + LP + KVPN E ++EGKK P K+R I L SI DL T+++TA+GWP
Sbjct: 544 GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 602
Query: 731 SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
SV G AL+ LA + + D V D++D C +E + + F +
Sbjct: 603 SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 660
Query: 784 EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 661 EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 720
Query: 844 LQ 845
LQ
Sbjct: 721 LQ 722
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/97 (83%), Positives = 89/97 (91%), Gaps = 3/97 (3%)
Query: 846 NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
NQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRT
Sbjct: 874 NQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHSRT 933
Query: 906 AMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKN 939
AMNMY HIR AVE +V+LEWH G++KPPVPLLK+
Sbjct: 934 AMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKD 970
>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
Length = 1411
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 288/598 (48%), Positives = 383/598 (64%), Gaps = 51/598 (8%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
NV VV++V AK +V L + +L HACDTEV +D+K+++P+ HG +ICFS+Y GP+
Sbjct: 681 NVTVVNDVEKAKAIVNQLLS-LTYLYHACDTEVVDLDLKKQSPIGHGRIICFSVYCGPDI 739
Query: 404 DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
DFG G S +WVD + G ++L F P+FE SI KVWHNY FD H+ N+ + V GF
Sbjct: 740 DFGTG-SRLWVDTMGEQGNEILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGG 798
Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
DT+HMARLWD++R GGYSLE L+ K++ + K S+KD+
Sbjct: 799 DTLHMARLWDAARNGRGGYSLEGLS--------------KELLDNH-------KTSIKDL 837
Query: 524 FGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMS 581
FG+ K+K DG GK + P+E +QR + L WI YS+ D+ T L ++L+ KL M
Sbjct: 838 FGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDAELTWNLRENLQAKLQNMV 897
Query: 582 WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
W D +M+DFY W+PFG +L ME GM VD E+L +E VA + + ++
Sbjct: 898 WMND------TNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEGVATKDIQDNMDA 951
Query: 642 FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
F++WA K+CP+AKYMN SD Q++QLLF N K E +P+ER F+ NTEG I EGK
Sbjct: 952 FQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKT-KEEMPLEREFETENTEGFIEEGK 1010
Query: 702 KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSG 761
K P K R L +G LP +TA+GWP+V +L+ LA N S H D S
Sbjct: 1011 KKPKKMRPFLLSGLG--LPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKIFNHFKDKS- 1067
Query: 762 CTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKN 821
E + KG EQE EA AI++L E+ S+ +L+S+FI+PLQ + N
Sbjct: 1068 ---EDKEKG-----------EQEGIEASKAITSLLEIGSVGTLLSSFIIPLQ--KLCDSN 1111
Query: 822 GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S+N+NTETGRLS++RPNLQNQPALEKDRYKIR+AF PGN+L+VADYGQLELR+
Sbjct: 1112 HRVHTSVNVNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELRL 1171
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKN 939
LAH+ NC+SM++AFK GGDFHSRTAM MYPH++ AV+ G VLLEW G+ +PP PLLK+
Sbjct: 1172 LAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKD 1229
>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
Length = 551
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/429 (63%), Positives = 323/429 (75%), Gaps = 12/429 (2%)
Query: 520 MKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLE 579
MK IFGR+K++KDGS GK +I PVE+LQRE+RELWI YS+ DS++TLKLY+SLK KL
Sbjct: 1 MKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEA 60
Query: 580 MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAV 639
W D P +M+DFY+EYW+PFG +LVKMETEG+LVDR YLSEIEK A E+E A
Sbjct: 61 KEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAA 118
Query: 640 NRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
++FRKWASKHCPDAKYMNV SD Q+RQL FGG N E+ P + FKVPN EG+ E
Sbjct: 119 DKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKRGETWPQSKTFKVPNDEGIATE 178
Query: 700 GKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC-VDGAHDLD 758
GKKTP K R I L +I DL +M+T TGWPSV GD L++LA I ++ +D + D
Sbjct: 179 GKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPTDHIYKIDDGQEFD 237
Query: 759 DSGCT-----EETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
+ G + ++ E + + F ++ REAC AI+ALCEV SID LIS FI+PLQ
Sbjct: 238 EDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAIAALCEVFSIDKLISGFIVPLQ 297
Query: 814 GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
G +S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIR AF+A PGN+LIVAD
Sbjct: 298 GDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 357
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GED 930
YGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H+R+AVE +VLLEWH G+D
Sbjct: 358 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 417
Query: 931 KPPVPLLKN 939
KPPVPLLK+
Sbjct: 418 KPPVPLLKD 426
>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
Length = 1334
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/601 (47%), Positives = 382/601 (63%), Gaps = 54/601 (8%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
NV +V +V AKK V L ++K+ HACDTE ID+K+ +P+ HG +ICFSIY GP+
Sbjct: 601 NVTMVRDVETAKKAVATLM-QHKNKYHACDTETIAIDLKKVSPIGHGRMICFSIYCGPDV 659
Query: 404 DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
F +G + +WVD++D G +L EF +FED SI KVWHNY+FD H+ N+ + V GF
Sbjct: 660 KFFDGNTRLWVDVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNHNINVKGFG 719
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
DT+HMARLW+++R+ GGYSLEAL R+++++ K +KD
Sbjct: 720 GDTLHMARLWNAARQNSGGYSLEALC--RELLNK-------------------TKTPIKD 758
Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
+FG++K+K +G AGK TI P++ +QR+ R + WI YS+ DS T L ++L KL +M
Sbjct: 759 LFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDM 818
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
W +M+DFY W+PFG +L +ME GM +D +YL +E A + E N
Sbjct: 819 VW------TQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKDMEENRN 872
Query: 641 RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
RF WASKH AKYMN SD Q++QLLF N K E +P + F+ N EG+I EG
Sbjct: 873 RFISWASKHSEGAKYMNPDSDAQIQQLLFAPVTNKKT-KEEMPKSKDFETENVEGIIEEG 931
Query: 701 KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHD--LD 758
+ P K N++ G+ P+ T +GWPSV AL+ LA S E A+ +D
Sbjct: 932 RTKPKK--NMSFILDGLGFPSNSVTTSGWPSVDASALRELAGK-SPENGKFGTAYQFFVD 988
Query: 759 DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
S EE E G +EAC AI++L E+ +I +L++ FI+PLQ ++
Sbjct: 989 KSENKEEGEALG---------------KEACLAIASLLELGTIGTLLNTFIIPLQ--KLA 1031
Query: 819 GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
KN R+H S+N+NTETGRLS+R+PNLQNQPALEKDRYKIR+AF PGN+LIVADYGQLE
Sbjct: 1032 DKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
LR+LAH+ NCKSM+ AFK GGDFHSRTAM MYPH++ AV+ G+VLLEW G+ +PP PLLK
Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151
Query: 939 N 939
N
Sbjct: 1152 N 1152
>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
Length = 968
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 303/636 (47%), Positives = 402/636 (63%), Gaps = 38/636 (5%)
Query: 321 KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEV 376
+A NE+ E LR + V V+ V A++V+ +L + + L HACDTEV
Sbjct: 153 EAQVNEDEEIATGLRDE-------VQTVETVEEARRVLKILLDNAGTAKRPLYHACDTEV 205
Query: 377 AKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFF 432
A IDV +TPV HG+V CFS++ GP+ +F + +S +WVD L GG + F +F
Sbjct: 206 AYIDVSDQTPVGHGQVTCFSVFCGPDVNFAPEGESKRSLLWVDTLRGG-EGVWEVFKEYF 264
Query: 433 EDPSIKKVWHNYSFDNHVLENY-GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
E+P++KKVWHNYSFD HV+EN+ G+K++GF ADTMHMARLW+S+R +GGYSLEAL+
Sbjct: 265 ENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRGLDGGYSLEALSSSA 324
Query: 492 KVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR-- 549
+VMS+ + G E K MK IFG+ KLKKDG+ GK + PVEE+Q
Sbjct: 325 EVMSDCAEML------GAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEEIQEDV 378
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQ 603
E+R+ WI YSA D+ T L +SL+ KL MS + L KP K +++DFY Y
Sbjct: 379 EQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLA 438
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
FG +L +ME G+LVD+E+L+ EK+A ++ A FR WAS C AK MNVGS Q
Sbjct: 439 EFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNVGSGLQ 498
Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD- 718
+RQLLF G N + D + + R F +TE + A G+ K P K + L I V
Sbjct: 499 IRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWDAAGREGKAPKKTMKVALHGITVKP 558
Query: 719 LPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKI 778
+P + +TATG P+V L++LA A +D L D +EE K A
Sbjct: 559 IPVQTFTATGLPAVSSVVLRSLAGKPGAARAIMDAWDTLSDEEKSEEA-LKKACGGAFDA 617
Query: 779 FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLS 838
F QE +AC AI AL +V +ID+L+SNFI+PLQG ++ G GRVH +LNINTETGRLS
Sbjct: 618 FGGGQEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLS 677
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
ARRP+LQNQPALEKDRY IR+AF A PGN L+VADYGQLELR+LAH+A CKSM +AF+AG
Sbjct: 678 ARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAG 737
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
GDFHSRTA+ MY +I++A+ G+V+LE +GE + V
Sbjct: 738 GDFHSRTALGMYSNIKDAIAKGEVVLE-YGEQEEGV 772
>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
Length = 1369
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/605 (46%), Positives = 380/605 (62%), Gaps = 56/605 (9%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
NV +V +V A+ VV +L K K HACDTEV ID+K+ +P+ HG++ICFSIY GP+
Sbjct: 631 NVTMVRDVETARMVVSILM-KQKDRFHACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQV 689
Query: 404 DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
F +G S +WVD++D G ++L F +FED SI KVWHNY+FD H+ N+G+ V GF
Sbjct: 690 KFHDGNSRVWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFG 749
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
DT+HMARLW++SR GGYSLEAL+ K+ K K+ +KD
Sbjct: 750 GDTLHMARLWNASRMNSGGYSLEALS---------KELLNK------------PKVPIKD 788
Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
+FG RK+K DG GK I P+E +QR+ + + WI YS+ DS T L +++ KL +M
Sbjct: 789 LFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLDSELTWLLRENIHIKLRDM 848
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
W G +M+DFY W+PFG +L +ME G+ VD +YL +E+ A + E
Sbjct: 849 EWN------QGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTDMEENRK 902
Query: 641 RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
F WA H PDA+ MN SD Q++QL F N K ESLP+E+ F+ N +G I G
Sbjct: 903 VFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKT-KESLPLEKDFECDNLDGTIEVG 961
Query: 701 KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
K P K + LR IG++ ++ T GWPSV +L+ LA + +DG +
Sbjct: 962 KTKPKKKKTFYLRGIGME--SKSLTTNGWPSVDSSSLRELAGK-----NPIDGKYG---- 1010
Query: 761 GCTEETEYKGAVASNNKIFAT------EQEAREACDAISALCEVCSIDSLISNFILPLQG 814
+ Y V S N+ + EQ REA AI+AL E+ SI +L++ FI+PLQ
Sbjct: 1011 -----SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQ- 1064
Query: 815 SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ N R+H S+N+NTETGRLS+++PNLQNQPALEKDRYKIR+AF PGN+LIVADY
Sbjct: 1065 -KLADSNSRLHTSINVNTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADY 1123
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
GQLELR+LAH+ NCKSM+ AF+ GGDFHSRTAM MYPH++ A++ G+VLLEW GE +PP
Sbjct: 1124 GQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPK 1183
Query: 935 PLLKN 939
PLLKN
Sbjct: 1184 PLLKN 1188
>gi|384253732|gb|EIE27206.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 924
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 299/617 (48%), Positives = 377/617 (61%), Gaps = 49/617 (7%)
Query: 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG------KSCIWVDLLDGGG 421
+ ACDTEV+ IDV +E+P HG VICFS+Y G + DFG ++ +WVD + G
Sbjct: 128 MFFACDTEVSHIDVTKESPCGHGTVICFSVYCGEDIDFGGSGDGDIRQNQLWVDTM--GT 185
Query: 422 RDLLNE-FAPFFEDPSIKKVWHNYSFDNHVLENY-----GLKVSGFHADTMHMARLWDSS 475
D + E F FFED S+ KVWHNYSFD HVL N ++ GFHADTMHMARLWDSS
Sbjct: 186 VDAIWEAFRDFFEDKSVLKVWHNYSFDRHVLANVFVGGRPIEARGFHADTMHMARLWDSS 245
Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
RR +G YSLEAL+GD V ++ GN K MK++F K+KKDG+
Sbjct: 246 RRGKG-YSLEALSGDEIVPGVHRENVLVPRRLGNGSSP-SAKTGMKELFAEPKVKKDGTL 303
Query: 536 GK------------ISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
K I + P+EELQ R WI YSA D+ T L L+++L M
Sbjct: 304 SKACLYTPFLSRVQIKELPPMEELQACVRRRGKWIRYSALDAKATHDLALGLQRQLAAMP 363
Query: 582 WKLD---GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
G G +++D YQ+YW+PFGE+L ME EGM+VDRE+L E+ A +QE A
Sbjct: 364 CPPQLYLGMDPAGYTLWDLYQDYWKPFGELLTDMEKEGMMVDREHLRAAEEKAVEDQERA 423
Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIA 698
RFR+W PDA+YMN+ S Q+RQLLF G PN K D L ++R FK PN G I
Sbjct: 424 KKRFREWVRTKVPDAEYMNICSGPQIRQLLFPGVPNMKADKGRLELQRTFKAPNVLGRIE 483
Query: 699 EGKKTPSKFRNITLRSI-GVD----LPTEMYTATGWPSVGGDALKTLARNISAEYDCV-- 751
EGKK K +I + + GVD L E++TA+GWP+V L+ LA A +
Sbjct: 484 EGKKIAKKQMDIVIHGLWGVDAVSPLVPEVFTASGWPAVSTPVLRGLAGKPGAAKRALLE 543
Query: 752 -DGAHDLDDSGCTE-ETEYKGAVASNN----KIFATEQEAREACDAISALCEVCSIDSLI 805
A L D E E K A A +F +E AC A+ ALCEV ++D+L+
Sbjct: 544 LAAARVLADMQSLEYEANMKEAAACGYGKLYAVFGGGREGLHACAAVDALCEVSAVDTLL 603
Query: 806 SNFILPLQGSNVSGKN-GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
SNFI PLQG ++ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYK+R+AF A
Sbjct: 604 SNFIRPLQGGAIATPVLHRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKVRKAFRAE 663
Query: 865 PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
PG +L+VADYGQLELR+LAH+A+C+SML AF+ GGDFHSRTA+ MY HI+ A++ G+ LL
Sbjct: 664 PGKTLVVADYGQLELRLLAHMADCESMLRAFRLGGDFHSRTALGMYDHIKAAIDRGECLL 723
Query: 925 EWHGED--KPPVPLLKN 939
EW + K PVPLLK+
Sbjct: 724 EWDSVEGQKAPVPLLKD 740
>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
Length = 972
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 306/690 (44%), Positives = 407/690 (58%), Gaps = 71/690 (10%)
Query: 294 PPKL-------VSFKRSNQKNPKNDAAEGT------GQNKKASENENSEKLEILRSKLAS 340
PPK+ +S ++N AA G +K+A+ + + S LA
Sbjct: 95 PPKILRFNGDKISLHKTNGNGNGRRAASGVYELDVDADDKRAASSATDDDKP---SNLAG 151
Query: 341 FYSNVMVVDNVSAAKKVVWMLT----NKYKHLVHACDTEVAKIDVKQETPVDHGEVICFS 396
V +V++ + A++V+ +L + + + HA DTEV+ IDV ++ PV HG V CFS
Sbjct: 152 LIDEVAIVEDAAEARRVLKILMANTGDADRPVYHAVDTEVSHIDVSEQCPVGHGRVTCFS 211
Query: 397 IYSGPEADFG--------------NG---------KSCIWVDLLDGGGRDLLNEFAPFFE 433
+Y GP+ DFG NG K+ +WVD + G F P+FE
Sbjct: 212 VYCGPDVDFGASQSGGNGSKNSRKNGSTGPAGGKPKTLLWVDTMSLGDEGW-KIFKPYFE 270
Query: 434 DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
P +KKVWHNY FD HV+EN+G+K++GF ADTMHMARLW+S+R+ EGGYSLEAL+ D KV
Sbjct: 271 SPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEGGYSLEALSSDPKV 330
Query: 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EE 551
MS+ + Y + +E K MK IFG+ KLKKDG+ GK + P++E+Q E+
Sbjct: 331 MSDAGEMYSE-----AGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTDPEQ 385
Query: 552 RELWISYSAFDSINTLKLYKSLKKKL----LEMSWKLDGKPVPGK--SMFDFYQEYWQPF 605
RE WI YSA D+ T L +SL+ KL E L KP + +++DFY Y + F
Sbjct: 386 RETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHYLREF 445
Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
GE+L ME+ GM VD+ +L++ EK A +++ A + FR WA+ CP A++MNVGS Q+R
Sbjct: 446 GEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSGIQVR 505
Query: 666 QLLFGGKPNSKDDSESLPIERIFKVPNTE-------GVIAEGKKTPSKF--RNITLRSIG 716
QLLF G PN + D + R F + + E G + K +KF IT R
Sbjct: 506 QLLFAGAPNKRRDKPGVEKTREFAMVSKEWTEWDENGREGKAPKKAAKFELHGITKR--- 562
Query: 717 VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
+L +YT TG P+V L+ LA A + VD L D +E K S
Sbjct: 563 -NLQPPVYTTTGLPAVSSVVLRALAGKPGAARELVDNWDALADDQKKDEALAK-KCGSAF 620
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
F + EAC AI AL +V +ID+L+SNFI+PLQ N+ G NGRVH +LNINTETGR
Sbjct: 621 LAFGGGFDGVEACAAIDALNDVAAIDTLLSNFIIPLQSDNLRGFNGRVHAALNINTETGR 680
Query: 837 LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
LSARRP+LQNQPALEKDRY IR+AF A PGN LIVADYGQLELR+LAH+A C SM +AF+
Sbjct: 681 LSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFE 740
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
AGGDFHSRTAM MY IR A+E G+ LLE+
Sbjct: 741 AGGDFHSRTAMGMYKEIREAMEQGKCLLEY 770
>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 824
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 288/612 (47%), Positives = 392/612 (64%), Gaps = 31/612 (5%)
Query: 345 VMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG 400
V V+ V A++V+ +L + + + HACDTEVA I V +TPV HG+V CFS+Y G
Sbjct: 26 VQTVETVEEARRVLKILLDNAGTEDQPMYHACDTEVAYISVADQTPVGHGQVTCFSVYVG 85
Query: 401 PEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY-G 455
P+ +F + +S +WVD L GG + F +FE+ ++KKVWHNYSFD HV+EN+ G
Sbjct: 86 PDVNFAPEGESKRSLLWVDTLRGGD-GVWEVFKEYFENANVKKVWHNYSFDRHVVENHHG 144
Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
+K++GF ADTMHMARLW+S+R+ +GGYSLEAL+ MSE + G E
Sbjct: 145 IKLAGFAADTMHMARLWNSNRKLDGGYSLEALSSSADAMSECAEML------GAGAEMMR 198
Query: 516 GKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSL 573
K MK IFG+ KLKKDG+ GK + P+EE+Q R+ R+ WI YSA D+ T L +SL
Sbjct: 199 AKRGMKKIFGKPKLKKDGTPGKTMILPPIEEIQEARDSRDRWIEYSALDAQATWFLRESL 258
Query: 574 KKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
+ KL MS + L KP K +++DFY Y FG +L +ME G+LVD+ +L+
Sbjct: 259 EAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKAHLAHA 318
Query: 628 EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
EK+A ++ A + FR WA+ C A+ MNVGS Q+RQLLF G N + D + + R
Sbjct: 319 EKMAHEDKRVAEDYFRNWAASKCEGARIMNVGSGLQVRQLLFAGAKNKRRDKPGVELTRE 378
Query: 688 FKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD-LPTEMYTATGWPSVGGDALKTLAR 742
F ++E + A G+ K P K + L I V + + +TATG P+V L+ LA
Sbjct: 379 FTQESSEWIAWDAAGREGKAPKKTMKVALHGITVKPIQVQTFTATGLPAVSSVVLRALAG 438
Query: 743 NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
A +D L D+ TE+ K A + + F +E +AC AI AL +V +ID
Sbjct: 439 KPGAARAIMDTWDSLADAEKTEDV-LKKACGTAFEAFGGGKEGVQACAAIDALNDVAAID 497
Query: 803 SLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
+L+SNFI+PLQG ++ G GRVH +LNINTETGRLSARRP+LQNQPALEKDRY IR+AF
Sbjct: 498 TLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFT 557
Query: 863 AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
A PGN L+VADYGQLELR+LAH+A+CKSM +AF+AGGDFHSRTA+ MY +I+ A++ G+V
Sbjct: 558 AGPGNILVVADYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEV 617
Query: 923 LLEWHGEDKPPV 934
+LE +GE + V
Sbjct: 618 VLE-YGEQEETV 628
>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 912
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 303/674 (44%), Positives = 398/674 (59%), Gaps = 67/674 (9%)
Query: 311 DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----K 366
D A+ + KK S+ E + LA V V+ V AK+V+ +L + +
Sbjct: 51 DVADDSKTEKKTSDLEGDKP-----DNLAGLIDEVQTVETVEEAKRVLGVLMSNLGSADR 105
Query: 367 HLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG-------------------- 406
+ HA DTEVA IDV +TPV HG V CFS++ GP+ DF
Sbjct: 106 PIYHAVDTEVADIDVADQTPVGHGVVTCFSVFCGPDVDFAPGAGGGGGGGDAAAADGKEN 165
Query: 407 -----------------NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNH 449
KS +WVD L G F P+FE P KKVWHNYSFD H
Sbjct: 166 DSGNGNGDGGGGTSTGAKRKSLLWVDTLKLGDEGWAI-FKPYFESPDAKKVWHNYSFDRH 224
Query: 450 VLENYG-LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKG 508
V+EN+G +K++GF ADTMHMARLW+S+R+ EGGYSLEALT D KVMSE + + +
Sbjct: 225 VIENHGGIKLAGFAADTMHMARLWNSNRKLEGGYSLEALTSDPKVMSEAGEMFSE----- 279
Query: 509 NTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINT 566
+E K MK IFG+ K+KKDG+ GK + P++++Q E+RE WI YSA D+ T
Sbjct: 280 AGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPPIDQIQNDPEQRETWIEYSALDAQAT 339
Query: 567 LKLYKSLKKKLLEMSW----KLDGKPV--PGKSMFDFYQEYWQPFGEILVKMETEGMLVD 620
L +SL+ KL +S +L KP ++++FY Y + FGE+L ME+ GM VD
Sbjct: 340 WFLRESLEAKLRGISCDACPRLSDKPTFHECANLWEFYTTYLREFGEVLTDMESAGMFVD 399
Query: 621 REYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
+++L EK A A+++ A + FR+WA K CP A++MNVGS Q+RQLLF G N + D
Sbjct: 400 KKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEHMNVGSGIQVRQLLFAGARNKRPDKP 459
Query: 681 SLPIERIFKVPNTEGVI-AEGK---KTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGD 735
+ ER F + + E EG K P K TL + DL +YTATG P+V
Sbjct: 460 GVEKEREFAMVSPEWTAWDEGGREGKAPKKGAKFTLHGVTKRDLAVPVYTATGLPAVSSV 519
Query: 736 ALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISAL 795
L++LA A + VD L D+ T + K A+ + F + EAC A+ AL
Sbjct: 520 VLRSLAGRPGAAREIVDTWDALTDAEKTNDALKKSCGAAYDA-FGGGYDGAEACAAVDAL 578
Query: 796 CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
+V +ID+L+SNFI+PLQ N+ GK GRVH +LNINTETGRLSARRP+LQNQPALEKDRY
Sbjct: 579 NDVAAIDTLLSNFIIPLQSDNLRGKTGRVHTALNINTETGRLSARRPSLQNQPALEKDRY 638
Query: 856 KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
IR+AF PGN L+VADYGQLELR+LAH+A C SM +AF+AGGDFHSRTAM MY IR
Sbjct: 639 GIRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGMYKEIRE 698
Query: 916 AVETGQVLLEWHGE 929
A++ G+ LLE+ E
Sbjct: 699 AMDEGKCLLEYGSE 712
>gi|412990863|emb|CCO18235.1| predicted protein [Bathycoccus prasinos]
Length = 1016
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 295/657 (44%), Positives = 399/657 (60%), Gaps = 44/657 (6%)
Query: 315 GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVH 370
TG AS +E++E L V V V AK V +L + H
Sbjct: 183 ATGDEDGASVDESNETL-----IPTGLREEVFCVTTVEDAKHAVAILNENLGTDEEPKYH 237
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGG----R 422
A DTEV+ IDV +TPV HG VICFS+++GP+ +F + KS +WVDLLD +
Sbjct: 238 ALDTEVSHIDVTCQTPVGHGNVICFSVFAGPDVNFAKPGESKKSLLWVDLLDKDNVRFNQ 297
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++ + F + E+ KKVWHNYSFD HV+EN+G+++ GF ADTMHMARLW+++R+ +GGY
Sbjct: 298 EIFDVFTSYLENEKAKKVWHNYSFDRHVVENHGIQLGGFAADTMHMARLWNTNRKLDGGY 357
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
SLEALT D +VM++ + ++ K+ MK IFG+ KLKKDG+ GK +
Sbjct: 358 SLEALTSDAEVMADCGEMLSA------SETMMRAKLGMKKIFGKPKLKKDGTPGKTIELP 411
Query: 543 PVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGKS--M 594
P+E +Q + R+ WI Y+A D++ T L +SL+ KL +S L GKP KS +
Sbjct: 412 PMEVIQTTDDSRDRWIEYAALDAMATWFLRESLEAKLRGISCDACPILSGKPQFKKSTTL 471
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
+DFY Y +PFG +L +ME GM VD E+L+ E++A ++++ A FR+WA+ C DAK
Sbjct: 472 WDFYTRYTRPFGNLLTQMERNGMRVDLEHLANAEQLAMSDKKVAEEYFREWAASKCEDAK 531
Query: 655 YMNVGSDTQLRQLLFGGKPNSK-DDSESLPIERIFKVPNTEGVIAEGK----KTPSKFRN 709
YMNVGS Q+RQLLF G N + +D + R F + E + + K K P K
Sbjct: 532 YMNVGSGLQIRQLLFAGARNKRGNDKPGVEKTREFTQESQEWLEWDAKGREGKAPKKTSK 591
Query: 710 ITLRSIG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
ITL I LP YTATG P+V L+ LA A + D L ++ E
Sbjct: 592 ITLHGITKRPLPVLTYTATGLPAVSSVVLRQLAGKPGAAREICDNWDSLPEADKKNEKLS 651
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
K + + F E AC AI AL ++ ++D+L+SNFI+PLQG ++ G GRVH ++
Sbjct: 652 K-ICGTAFEAFGRGFEGARACAAIDALNDLAAVDTLLSNFIIPLQGDDIRGPEGRVHGAV 710
Query: 829 NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
NINTETGRLSARRP+LQNQPALEKDRY IR+AF A G +LIV DYGQLELR+LAH+A+C
Sbjct: 711 NINTETGRLSARRPSLQNQPALEKDRYGIRRAFTAEEGKTLIVCDYGQLELRLLAHMADC 770
Query: 889 KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW------HGEDKPPVPLLKN 939
KSM +AF AGGDFHSRTA+ MYP+IR A++ G+ LLE+ ED P PLLK+
Sbjct: 771 KSMKEAFIAGGDFHSRTALGMYPNIREAMDKGECLLEYGPKREGEDEDAPQPPLLKD 827
>gi|440799260|gb|ELR20315.1| 5'3' exonuclease, SAM domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1070
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/643 (44%), Positives = 389/643 (60%), Gaps = 68/643 (10%)
Query: 302 RSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWML 361
R NP +A + + K+EI V +VD A++V+ +L
Sbjct: 307 RPRLDNPTQEAVQAPPAPLSVAVALKRPKVEI---------EGVTIVDTPEEARRVLRIL 357
Query: 362 TNK-YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGG 420
+ + HACDTE KI+VK ++P ++GEVIC S+Y GP+ DFG G + +W+D +D
Sbjct: 358 RSPGVRERYHACDTEAIKIEVKHQSPYNYGEVICASVYCGPDVDFGTGPN-LWIDNMDDA 416
Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
R +L+ F +FED IKKVWHNYSFD ++ +G+ V GF DT+HMARLWD++R + G
Sbjct: 417 -RGVLDLFKEYFEDEGIKKVWHNYSFDRAMMWRHGIDVKGFGGDTIHMARLWDAARTSVG 475
Query: 481 G-YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539
YSLEALTG+ + +G T K S+K+IFGR K+ KDG+ GK
Sbjct: 476 KKYSLEALTGE--------------LLEGET------KRSIKEIFGRNKVLKDGTLGK-E 514
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK-PVPG--KSMFD 596
+A +E L WI YS +D+ T +L L+ +L EM W +GK +PG ++M+D
Sbjct: 515 IVAGMEALNN-----WIYYSTYDTRGTYELRDKLEDQLREMPWVYEGKKALPGANRTMWD 569
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
+YQ YW PFGE+L ME EG+ V+ +YL+EIE+VA AE + RF++WAS++C DA+YM
Sbjct: 570 YYQNYWLPFGEVLTDMEREGIKVNVDYLAEIEQVAVAEGKKHQIRFKEWASEYCQDARYM 629
Query: 657 NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
N SD Q +QL F N K D + +P ER+F + N EG+ K R I + G
Sbjct: 630 NPTSDAQKQQLFFAPCKNLKTD-DMMPAERLFDIENDEGIPDPVTGKVKKKRQIRISGFG 688
Query: 717 VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
LP +T GWP+ G + LK LA G + K VA
Sbjct: 689 --LPAIAHTGAGWPAAGAEVLKQLA-------------------GKPFDNPPKYGVAY-- 725
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
K F+ + EAC AI +L ++ SID+L+SNFI+PLQ + N R+H SLNINTETGR
Sbjct: 726 KAFSEGEAGAEACQAIDSLVKMSSIDTLLSNFIVPLQ--HEVDPNNRIHASLNINTETGR 783
Query: 837 LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
LS RRPNLQNQPALEKD +KIR +F GN LIVADYGQLELR+LAH+ C+SM+DAF+
Sbjct: 784 LSCRRPNLQNQPALEKDIFKIRSSFTCEKGNKLIVADYGQLELRLLAHMTKCRSMIDAFQ 843
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKN 939
GGDFHSRTA+ MY H++ A++ G+VLLEW GE KPPVPLLK+
Sbjct: 844 KGGDFHSRTALGMYSHVQEAIQKGEVLLEWGGEGKPPVPLLKD 886
>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
Length = 1855
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 285/607 (46%), Positives = 374/607 (61%), Gaps = 64/607 (10%)
Query: 343 SNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPE 402
++V V+ V A+++ + HACDTEV IDVK+++P+ HG++ICFSIY GP+
Sbjct: 1123 NDVTCVNTVEHAREI---------DVYHACDTEVIDIDVKEQSPIGHGKIICFSIYCGPD 1173
Query: 403 ADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
DFG G S IWVD+L G ++L F +FED SI KVWHNY+FD HV N+ + V GF
Sbjct: 1174 IDFGTG-SRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFG 1232
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
DTM MARLWD+SR GGYSLE LT D DK K +M D
Sbjct: 1233 GDTMLMARLWDASRMMRGGYSLEGLTKDLL----DKH-----------------KTNMDD 1271
Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
+FG+ KLK DG+ GK + P+E LQR + L WI YS+ D+ T L ++L KKL+ M
Sbjct: 1272 LFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWMLRENLHKKLMTM 1331
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
W P +M+DFY W+PFG++L ME GM VD E+L +E +A+ +
Sbjct: 1332 EWI-----GPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVEVIAQRDITEHNE 1386
Query: 641 RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
FR+WA +C + K+MN+ SD Q++Q LF N K E E + N +G+I EG
Sbjct: 1387 NFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKEEMAREEEFERE-NVDGIIEEG 1445
Query: 701 KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
K + I + G+ LP T +GWPSV +L+ L+ D +G +
Sbjct: 1446 AK--KAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSGK-----DPANGKYG---- 1494
Query: 761 GCTEETEYKG-AV------ASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
T Y AV A+ +I ++E R+AC AI++L EV SI +LIS+FI+PLQ
Sbjct: 1495 -----TAYNHFAVDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFIIPLQ 1549
Query: 814 GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
++ N R+H S+N+NTETGRLS+RRPNLQNQPALEKDRYKIR+AF PGN+L+VAD
Sbjct: 1550 --RLADSNHRLHTSVNVNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVAD 1607
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
YGQLELR+L H+ NCKSMLDAF+ GGDFHSRTAM MYPH+R AV+ G+VLLEW GE PP
Sbjct: 1608 YGQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEGAPP 1667
Query: 934 VPLLKNK 940
PLLK+K
Sbjct: 1668 KPLLKDK 1674
>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
Length = 1054
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/602 (46%), Positives = 371/602 (61%), Gaps = 54/602 (8%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V ++ + A++V+ L + HACDTEVA+IDVK PV +G V C S+YSGP+ D
Sbjct: 315 VNLIQDEEGARRVLQKLEELGPNHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 374
Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
+GNG +WVD LD L F F E + KVWHNYSFD HVL N+G+ V G D
Sbjct: 375 YGNG-PYVWVDNLDSA-EGTLQLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGD 432
Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
TMHMARLW+++R GGYSLE+LT D ++ + KK MK++F
Sbjct: 433 TMHMARLWNTARFQNGGYSLESLTAD--LLLQRKK-------------------PMKELF 471
Query: 525 GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
G KLKKDGS GK + VEELQR E R+ WI YS +D+ +T L++ L+ KL + W
Sbjct: 472 GIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFW 531
Query: 583 --KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
K +G SM++FY+EY PFGE L +E GM VD EYL+ +EK A ++
Sbjct: 532 FEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEYLAGVEKQALEDRARLEK 591
Query: 641 RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
+WAS++C +++ +N+ S Q +QLLF N K + LP ER F+V NTEG I EG
Sbjct: 592 LVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEG 651
Query: 701 KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
K+ K RNIT+R +G+ P +TA+G P+ + LK LA + A
Sbjct: 652 KQKAKKKRNITIRGLGI--PPTHFTASGLPAASAEVLKDLAGHPEAN------------- 696
Query: 761 GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
+Y A F ++E AC A+ AL ++ SI+++++NFILPLQ ++
Sbjct: 697 ----PPQYGRAYGH----FEDKEEGAAACVALKALFDISSINTMLNNFILPLQ--ELADS 746
Query: 821 NGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
N RVHCSLN+NT+TGRLS+R+PNLQNQPA+ KDRYKIR AF A PG LIVADY QLELR
Sbjct: 747 NSRVHCSLNLNTDTGRLSSRKPNLQNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELR 806
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDK-PPVPLLK 938
++AH+ CK+M++AFKAGGDFHSRTAM MYP++ AVE G+ LLEW H K PP PLLK
Sbjct: 807 LMAHITQCKAMIEAFKAGGDFHSRTAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLK 866
Query: 939 NK 940
+K
Sbjct: 867 DK 868
>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
gi|113565595|dbj|BAF15938.1| Os04g0637400, partial [Oryza sativa Japonica Group]
Length = 560
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/379 (65%), Positives = 295/379 (77%), Gaps = 10/379 (2%)
Query: 568 KLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
+LY+SLK KL + W DG P SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEI
Sbjct: 1 RLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEI 58
Query: 628 EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
EKVA A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG N E+LP R
Sbjct: 59 EKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRT 118
Query: 688 FKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
KVPN +IAEGKKTP K+ I L SI DL T+++TA+GWPSV GDAL++LA + +
Sbjct: 119 IKVPNDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTD 177
Query: 748 YDCVDGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
+ DDSG +E +E+ + + + F ++ +EAC AI+ALCE+CSIDS
Sbjct: 178 LVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDS 237
Query: 804 LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
LISNFILPLQG+++S GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A
Sbjct: 238 LISNFILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVA 297
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
PGNSLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE +VL
Sbjct: 298 APGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVL 357
Query: 924 LEWH---GEDKPPVPLLKN 939
LEWH G++KPPVPLLK+
Sbjct: 358 LEWHPQPGQEKPPVPLLKD 376
>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
Length = 855
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 288/630 (45%), Positives = 375/630 (59%), Gaps = 62/630 (9%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
SE+ S L L A + +V D +A + V + H VHACDTEVA IDVK
Sbjct: 90 SEDIESHLLHGLSEADADHWPVNLVQDKQTADRLVQQIYALGPDH-VHACDTEVADIDVK 148
Query: 383 QETPVDHGEVIC----FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
PV +G+V ++Y GP+ ++GNG IWVD LD L F F ED S+K
Sbjct: 149 SVGPVGNGKVSLQFEDIALYDGPDVNYGNG-PYIWVDNLDNA-EGTLEYFRAFLEDSSLK 206
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD HVL N+G+ V G H DTMHMARLW+++R GGYSL+ALT D ++ + K
Sbjct: 207 KVWHNYSFDRHVLFNHGINVQGLHGDTMHMARLWNTARFKRGGYSLQALTSD--LLHQRK 264
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWI 556
K +MK++FG K +KDGS GK TI V +LQR + R WI
Sbjct: 265 K-------------------NMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWI 305
Query: 557 SYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG----KSMFDFYQEYWQPFGEILVKM 612
YS FD+ +T L++ L+ KL W D + G +SM++FY +Y PFGE L +
Sbjct: 306 RYSVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDI 365
Query: 613 ETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGK 672
E +GM VDR YL +EK A +++ WA ++C +A MNV S Q +QLLF
Sbjct: 366 ERKGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPY 425
Query: 673 PNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732
+++ + LP ER F+V NTE I GK+ P K RNIT+R G L +TA+G PSV
Sbjct: 426 SDAQGKA-ILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFG--LTPISFTASGLPSV 482
Query: 733 GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAI 792
L+ LA N A A+D FA ++E AC A+
Sbjct: 483 TASVLEELAGNPEANPPKYGKAYDH---------------------FADKEEGAAACHAL 521
Query: 793 SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
AL E+ SI+++++NFILPLQ ++ GRVHCSLN+NT+TGRLS+R+PNLQNQPALEK
Sbjct: 522 RALYEISSINTMLNNFILPLQ--ELADSAGRVHCSLNLNTDTGRLSSRKPNLQNQPALEK 579
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
DRYKIR AF+A G LIVADY QLELR+LAH+ CK+M++AF+AGGDFHSRTA+ MY +
Sbjct: 580 DRYKIRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDN 639
Query: 913 IRNAVETGQVLLEWHGED--KPPVPLLKNK 940
+ AVE+G+VLLEW PPVPLLK K
Sbjct: 640 VAKAVESGEVLLEWDYTKGTSPPVPLLKEK 669
>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
gi|113623082|dbj|BAF23027.1| Os08g0175600, partial [Oryza sativa Japonica Group]
Length = 570
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/353 (65%), Positives = 278/353 (78%), Gaps = 23/353 (6%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
++E++N+ KL LA+ Y V+VVDNV +A+ VV +LT KYK +HACDTEVA IDV
Sbjct: 237 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290
Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
K+ETPV HGEVICFSIYSG EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291 KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+
Sbjct: 350 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A KD+ K GK+SMK IFGR+ ++K+GS GK +I PV++LQRE+RELWI Y
Sbjct: 407 -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
S+ DS++TLKLY+SLK KL W DG P +M+DFY+EYW+PFG +LVKMETEGM
Sbjct: 459 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516
Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGG 671
VDR YLSEIEK A E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG
Sbjct: 517 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGG 569
>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
CCMP1335]
gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
CCMP1335]
Length = 745
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 260/584 (44%), Positives = 358/584 (61%), Gaps = 69/584 (11%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGK---SCIWVDLLDGGGRDLL 425
+HACDTEV ID+K+ PV HG V C S+YSG + D+G G + +W+D LD +DLL
Sbjct: 33 IHACDTEVMDIDLKEVGPVGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDA-KDLL 91
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
EF P+ ED + KVWHNY FD HVL N G+ V GF DTMHMARL D+SR YSLE
Sbjct: 92 QEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMK---YSLE 148
Query: 486 ALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVE 545
+LT +D+ K K+ MK+IFG +L+KDG+ G I I PVE
Sbjct: 149 SLT--------------EDLLKQR-------KVPMKEIFGVPRLRKDGTDGAIVDIPPVE 187
Query: 546 ELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+QR+ RE WI YSA D+ +T LY+ LKK+LL++ W + +M +YQ + +
Sbjct: 188 VMQRDPKFRESWIKYSAMDAKSTYNLYQHLKKELLKVGW------IRQMNMMQYYQLHMR 241
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSDT 662
PFGE+L +E GMLV ++YL+++E AR ++E V FR+WA K PD MN+ S
Sbjct: 242 PFGELLTDLERRGMLVAKDYLADVEVQARKDREGHVEAFRQWAFKQLGPDGLAMNLASSV 301
Query: 663 QLRQLLFGGKPNSKDDSESLPIERIFK-----VPNTEGVIAEGKKTPSKFRNITLRSIGV 717
QL LFGG N+K + + R+FK +P+ + K+ ++T+RS+G
Sbjct: 302 QLTTFLFGGAENAKTKEPTEKV-RVFKTAREDIPDDAMEAYPKNEQEPKYVDVTVRSLG- 359
Query: 718 DLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNK 777
+ + +T +G PS D L+ LA + A+ A++
Sbjct: 360 -MTPDKFTVSGAPSATADVLRKLAGDPFADPPKYGAAYEF-------------------- 398
Query: 778 IFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRL 837
F + EAC A +L + SID++I+NF+ LQ ++ RVHCSLNINTETGRL
Sbjct: 399 -FGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQ--TLADDQNRVHCSLNINTETGRL 455
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
S+R+PN+QNQPALEKD+YKIRQAF+A PGN+LIVADYGQLELR+LA + +C SM+DAF+A
Sbjct: 456 SSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEA 515
Query: 898 GGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
GGDFHSRTA+ M+ +I++AV G VLLEW + + +PP P+LK++
Sbjct: 516 GGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQ 559
>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1042
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 302/421 (71%), Gaps = 17/421 (4%)
Query: 342 YSN--VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
+SN VMVVD+V A VV L +KYK +VHACDTEV +IDVK E+PV HG + CFSIY
Sbjct: 604 FSNDLVMVVDSVEKASMVVEHLMSKYKDVVHACDTEVTEIDVKNESPVGHGRITCFSIYC 663
Query: 400 GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVS 459
GP ADFG+GK+ +W+D+LDGG D+L F +FE PSIKKVWHNYSFD HVL +G+
Sbjct: 664 GPTADFGDGKNRLWIDVLDGG-EDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRHGIHPQ 722
Query: 460 GFHADTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM-GK 517
GFHADT+H+ARL+DS+RR +GGYSLE L+ D KVM Y + ++ DE + GK
Sbjct: 723 GFHADTIHLARLYDSARRGAKGGYSLEVLSADEKVMD----GYIRHSTE--VDESVLAGK 776
Query: 518 ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKK 575
SMK++FG+ LKKDG+ GKI TI PV ELQR+E R+ WI YS FD++ T +L+ SL++
Sbjct: 777 KSMKELFGKANLKKDGTPGKIKTIPPVHELQRDEELRDAWIYYSTFDAVCTWRLFLSLQQ 836
Query: 576 KLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQ 635
KL W + G SM+DFY++YW+PFGE+LV+ME +GMLVD +L+ +EKVA+A+Q
Sbjct: 837 KLSSTPWNVADLKKKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCNHLATVEKVAKAQQ 895
Query: 636 EAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEG 695
E +V+RFRKWA+K+C DA MNVGSD Q+RQ L+GG N KD + LP+ER+F VPNT+G
Sbjct: 896 EISVSRFRKWAAKYCADAAQMNVGSDAQIRQFLYGGTANRKDKDQVLPMERVFSVPNTDG 955
Query: 696 VIAEGKKTPSKFRNIT---LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVD 752
I EGKK K + I L + G+ LP E YT++GWP+VGG A+K LA ++ +Y ++
Sbjct: 956 FIEEGKKVAKKTKPIVISGLANFGIKLPVETYTSSGWPAVGGAAIKVLAGKVAIDYSALE 1015
Query: 753 G 753
Sbjct: 1016 A 1016
>gi|403355195|gb|EJY77168.1| DNA polymerase I family protein [Oxytricha trifallax]
Length = 887
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/608 (40%), Positives = 351/608 (57%), Gaps = 56/608 (9%)
Query: 347 VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
++ + A++VV +L Y +HA DTE ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 131 IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 189
Query: 407 NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
NG + D + + EF + EDP+ K WHNY +D H+ N+G+ V GF ADTM
Sbjct: 190 NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 247
Query: 467 HMARLWDSSRRTEGGYSLEALTGDRK-VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFG 525
HMARL+D S + YSL AL+ K ++E K+ +D+ + + + + +
Sbjct: 248 HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLRQKLLVDPQKNETQLSTL-- 304
Query: 526 RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLD 585
KDG+ GK+ T VE + + E W+ YS +D+ T L ++L K L+ +
Sbjct: 305 -----KDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDAEITFFLRETLSKLLMTQQTDEE 359
Query: 586 GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKW 645
G + M Y +YW+ FGE+L ME EG+ +D EYL EI+ +A ++ +F +W
Sbjct: 360 GM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEYLKEIQLIAEKDKSQYEEKFLEW 415
Query: 646 ASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKDDSESL---PIERIFKVPNTEGV 696
K DAK N S Q++QLLF G KP +D E + P ER+FKV NT G
Sbjct: 416 VYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDNDGEIMYEYPKERLFKVENTAGF 475
Query: 697 IAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHD 756
I EGKK K R + + +G+ P YT + PS +K LA G D
Sbjct: 476 IKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADTPVIKRLA-----------GRPD 522
Query: 757 LDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
KG F E+E +E C A+ + I++L++ +ILPLQ
Sbjct: 523 ------------KGEFGEAYNFFLRQDKEEEGKECCWALWNWIQYKGIETLLNTYILPLQ 570
Query: 814 GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+KD+YKIR+AF+A GN L+VAD
Sbjct: 571 KA--PDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALDKDKYKIRRAFVADQGNKLVVAD 628
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKP 932
YGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+ MYP I+ +E+G++LLEW + + K
Sbjct: 629 YGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALGMYPEIKKDLESGEILLEWDNSKGKA 688
Query: 933 PVPLLKNK 940
P PLLK+K
Sbjct: 689 PKPLLKDK 696
>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 774
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/625 (41%), Positives = 363/625 (58%), Gaps = 67/625 (10%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V +V + A+KV+ L + HACDTEV ID+K PV +G V C S+YSGP+ D
Sbjct: 1 VTIVRTKAQAQKVLKRLFAADPSIFHACDTEVMAIDLKSVGPVGNGYVTCASVYSGPDFD 60
Query: 405 FGNGK---SCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
+G G+ SC+W+D LD +L EF +FE+P KVWHNY FD HV+ N G+ V G
Sbjct: 61 YGLGEGPGSCLWIDNLDDAA-GILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGIDVQGL 119
Query: 462 HADTMHMARLWDSSRRTE---GGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
DTMHMARL D+ R GGYSLEALT D ++S K+
Sbjct: 120 GGDTMHMARLQDTCRSKMAKGGGYSLEALTAD--LLSRRKQ------------------- 158
Query: 519 SMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKK 576
MK++FG +L+KDGS G + I PVE +QR E R +WI YS +D+ T L + L+K+
Sbjct: 159 PMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKR 218
Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEKVARAEQ 635
L W + K+++D+Y + +PF E+L ME G+ V+ ++YL +E+ AR ++
Sbjct: 219 LKMKPW------IGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDR 272
Query: 636 EAAVNRFRKW-ASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
FR+W ASK PD +N+ S TQL+ L FGG N K +S + R+ KVP E
Sbjct: 273 VHHSKIFREWAASKIGPDGLALNLSSATQLQALFFGGSENLKTKEQSETV-RVVKVPRDE 331
Query: 695 -------GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
+ + K + R+ L P + ++ D L+ + +
Sbjct: 332 IPEDALHALENQSKAEAQRIRDHLLA------PVQDKNIDDLETMSDDDLRDMLITRELQ 385
Query: 748 YDCVDGAH------DLD-DSG---CTEETEYKGAVASNNKIF--ATEQEAREACDAISAL 795
+ G DL+ SG T+ G + +N +F A E +E C+A+ +L
Sbjct: 386 FAGTRGEMLDRLRADLEFTSGVLNAVSPTDQDGHLFTNTTLFLQAYENFGKEGCEALFSL 445
Query: 796 CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
C + SID++I+ F+ LQ V K+ RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y
Sbjct: 446 CAIKSIDTMIATFLTSLQ-ERVDNKS-RVHCSLNLNTETGRLSSRGPNLQNQPALEKDTY 503
Query: 856 KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
+IR+AF A PGN+LIVADYGQLELR+LA + CKSM++AF+AGGDFHSRTAM+M+ +++
Sbjct: 504 QIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKA 563
Query: 916 AVETGQVLLEW-HGEDKPPVPLLKN 939
V++G+ LLEW + + PP PL+K+
Sbjct: 564 KVDSGEALLEWDYAKGDPPKPLVKD 588
>gi|359817569|gb|AEV66614.1| mitochondrial DNA polymerase [Oxytricha trifallax]
Length = 982
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/630 (39%), Positives = 355/630 (56%), Gaps = 83/630 (13%)
Query: 347 VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
++ + A++VV +L Y +HA DTE ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 196 IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 254
Query: 407 NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
NG + D + + EF + EDP+ K WHNY +D H+ N+G+ V GF ADTM
Sbjct: 255 NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 312
Query: 467 HMARLWDSSRRTEGGYSLEAL--------TGDRKVMSEDKK---------------AYQK 503
HMARL+D S + YSL AL T +++M +D + Q
Sbjct: 313 HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLRQKLLVDPQKNETQLSCIQS 371
Query: 504 DMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDS 563
++ G DE K+++ ++FG + KDG+ GK+ T VE + + E W+ YS +D+
Sbjct: 372 YLTTGIKDE----KVNIIELFGDYRTLKDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDA 427
Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
T L ++L K L+ +G + M Y +YW+ FGE+L ME EG+ +D EY
Sbjct: 428 EITFFLRETLSKLLMTQQTDEEGM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEY 483
Query: 624 LSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKD 677
L EI+ +A ++ +F +W K DAK N S Q++QLLF G KP +
Sbjct: 484 LKEIQLIAEKDKSQYEEKFLEWVYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDN 543
Query: 678 DSESL---PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
D E + P ER+FKV NT G I EGKK K R + + +G+ P YT + PS
Sbjct: 544 DGEIMYEYPKERLFKVENTAGFIKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADT 601
Query: 735 DALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDA 791
+K LA G D KG F E+E +E C A
Sbjct: 602 PVIKRLA-----------GRPD------------KGEFGEAYNFFLRQDKEEEGKECCWA 638
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALE 851
+ + I++L++ +ILPLQ + ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+
Sbjct: 639 LWNWIQYKGIETLLNTYILPLQKA--PDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALD 696
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
KD+YKIR+AF+A GN L+VADYGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+++
Sbjct: 697 KDKYKIRRAFVADQGNKLVVADYGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALDL-- 754
Query: 912 HIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
E+G++LLEW + + K P PLLK+K
Sbjct: 755 ------ESGEILLEWDNSKGKAPKPLLKDK 778
>gi|449018209|dbj|BAM81611.1| plant organellar DNA polymerase [Cyanidioschyzon merolae strain
10D]
Length = 948
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/587 (42%), Positives = 334/587 (56%), Gaps = 61/587 (10%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
WM ++ HA DTE ID +++PV G+VIC S + GP DFGNG +W+D
Sbjct: 235 WM---EHSQCYHAWDTETIGIDPTEDSPVGKGQVICLSAFCGPRVDFGNGPR-LWIDNF- 289
Query: 419 GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT 478
G + L+ F +FE+ I KVWHNYSFD VL N+G+ GF DTMHM+RL D++R
Sbjct: 290 GDAQGTLDYFKSYFENEEIPKVWHNYSFDRAVLYNHGIDCRGFGGDTMHMSRLLDAARLR 349
Query: 479 EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
YSLEALT D + K SM+++FGR ++ K+G GK
Sbjct: 350 ---YSLEALTEDFLLRK---------------------KRSMRELFGRPRILKNGKPGKE 385
Query: 539 STIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
+ ELQ + + W+ YS +D+ T L ++ L E ++ G ++M+D
Sbjct: 386 IIVPSTSELQMDPETMYHWVQYSTYDAEATWYLRDKFERLLREQ--EILGSE---RTMYD 440
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
Y E + PFG +L ME G +D L + ++VA A+++ FR+WA+++C DA +M
Sbjct: 441 LYTECFVPFGAVLTDMERIGFKIDIARLQDAQRVAEADRQRYTAMFREWAARYCADAIHM 500
Query: 657 NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
N S+ Q RQ F N K D E LP ER F+V NTE V+ K P K R I + +G
Sbjct: 501 NAESENQKRQFFFAPVRNKKTD-ELLPAERTFEVENTEQVVESAGKKPRKKRTIQISGLG 559
Query: 717 VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
LP +TA+GWP+ L+ LA SA +D E E
Sbjct: 560 --LPPVAFTASGWPACTAVVLRKLAGTPSASPAQGGLLYDFLTKERRESAE--------- 608
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
+A AC A+ AL E ++ +L+ +FI PLQ + KN R+H SLN+NTETGR
Sbjct: 609 -------DALAACKAVEALLEAGAVGTLLDSFIDPLQ--KMVDKNHRIHASLNLNTETGR 659
Query: 837 LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
LS+RRPNLQNQPALEKDRY++R AF GN+LIVADYGQLELR+LAH+ANC+SM++AFK
Sbjct: 660 LSSRRPNLQNQPALEKDRYRVRDAFTCEEGNTLIVADYGQLELRLLAHIANCRSMIEAFK 719
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLE----WHGEDKPPVPLLKN 939
AGGDFHSRTA +MYP+I +V G VLLE +G+ PLLK+
Sbjct: 720 AGGDFHSRTASSMYPYIAESVARGDVLLEPEPNANGQATSSKPLLKD 766
>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
Length = 831
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 255/606 (42%), Positives = 358/606 (59%), Gaps = 75/606 (12%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V V D+V AA+ V+ L + HA DTEV ID+ +E PV +G V CF++YSGP+
Sbjct: 75 VYVCDSVGAAEAVLARLEAADPAIYHAVDTEVDDIDLSREGPVGNGRVTCFTVYSGPDFS 134
Query: 405 F---GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
+ GK+ ++VD +D +L+ FAP+F D S +KVWHNY FD HV+EN+GL GF
Sbjct: 135 YDGEAAGKA-LFVDCVDAA---VLDVFAPWFADESRRKVWHNYGFDRHVVENHGLACRGF 190
Query: 462 HADTMHMARLWDSSR-RTEGG--YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
DTMHMARL DSSR RT GG YSLEAL+ D +S G K+
Sbjct: 191 AGDTMHMARLHDSSRLRTHGGDGYSLEALSRDL-------------ISAGE------AKV 231
Query: 519 SMKDIFGR--RKL----KKDGSAGKISTIAPVEELQREE----RELWISYSAFDSINTLK 568
SMK +F RK + +GSA + + ++ L+ + R+ ++ Y+A+D+ +T +
Sbjct: 232 SMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDDATRDAFVCYAAYDAKSTWQ 291
Query: 569 LYKSLKKKLLEMSWK--LDGKP----VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDR- 621
++ +L+++L +W D P P K+M+DFY+ Y+ PFG++L ME G+ VD
Sbjct: 292 VHDALRRRLERQAWAPMTDDPPRSPETP-KTMWDFYERYFVPFGKVLTDMEAAGIYVDAA 350
Query: 622 EYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
+L+++EK A A++ AA+ FR WA + PD +N S Q++ LLFGG N K E
Sbjct: 351 SHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSKQIQTLLFGGAMNQKT-GE 409
Query: 681 SLPIERIFKVPNTEGVIAEGKKTPS-KFRNITLRSIGVDLPTEMYTATGWPSVGGDALKT 739
L ER F V ++ +G S + R + +RS+G+ PT+ YT +G PS D L+
Sbjct: 410 YLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGL-TPTK-YTTSGAPSCTADVLRE 467
Query: 740 LARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
LA T+ + + F EAC A+ ALC +
Sbjct: 468 LA---------------------GRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMG 506
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
SID++++ FI PL+ ++ RVHCSLN+NTETGRLS+RRPNLQNQPALEKD+Y IR+
Sbjct: 507 SIDTMLNTFINPLR--LLADDESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYFIRK 564
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
AF A G +L+VADYGQLELR+LAH+A C+SML AF+ GG FHSRTA+ M+ H+R AVE+
Sbjct: 565 AFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAVES 624
Query: 920 GQVLLE 925
G VLLE
Sbjct: 625 GAVLLE 630
>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
Length = 858
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 246/654 (37%), Positives = 353/654 (53%), Gaps = 86/654 (13%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V +V N++ AK+V+ +L NKYK HA DTE IDVK ETP++ G +IC S ++GPE +
Sbjct: 51 VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109
Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
FGNG +++D DL+ F +FED I K+WHNY FD H+ N G+ V GF D
Sbjct: 110 FGNGPR-LFIDNF-AQNSDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167
Query: 465 TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
TMHMARL D S++ + YSL +L + ++ K + ++K N TDE G
Sbjct: 168 TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226
Query: 517 --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
K SMK IFG+ K K+G K+ + ++ + + W+ YS DS T
Sbjct: 227 EHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286
Query: 567 LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
L +LK L + + KP S+ D Y +YW GEIL ++E E
Sbjct: 287 YFLCLTLKDLLNKTKIFYNLKPTDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346
Query: 616 GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
GM VD +++ I+ A + + F KW + D N S QL+QL F
Sbjct: 347 GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406
Query: 670 ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
G K + + + E LP + F++ N ++ E ++TP K+
Sbjct: 407 QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNIHQIVKENQRTPLKY 466
Query: 708 RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
+ ++ +G++ P YT +G P +ALK LA G E+ +
Sbjct: 467 TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505
Query: 768 YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
Y G + + Q+ +AC AI+ L E+ SI+ L+ FI+PL ++ +GR+H S
Sbjct: 506 Y-GLIYHHFAGKGEPQKGIDACIAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562
Query: 828 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
+NINTETGRLS+R PNL NQPALEKDRYKIR++FIA GN LIVADYGQLELR+LAH+
Sbjct: 563 ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
CK+M+DAF GGDFHSRT + M+PHI+ ++ G++L+EW + K P PL+K+K
Sbjct: 623 CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDK 676
>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
Length = 858
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/654 (37%), Positives = 353/654 (53%), Gaps = 86/654 (13%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V +V N++ AK+V+ +L NKYK HA DTE IDVK ETP++ G +IC S ++GPE +
Sbjct: 51 VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109
Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
FGNG +++D DL+ F +FED I K+WHNY FD H+ N G+ V GF D
Sbjct: 110 FGNGPR-LFIDNF-AQNSDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167
Query: 465 TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
TMHMARL D S++ + YSL +L + ++ K + ++K N TDE G
Sbjct: 168 TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226
Query: 517 --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
K SMK IFG+ K K+G K+ + ++ + + W+ YS DS T
Sbjct: 227 DHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286
Query: 567 LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
L +LK L + + KP S+ D Y +YW GEIL ++E E
Sbjct: 287 YFLCLTLKDLLNKTKIFYNLKPTDSDYKTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346
Query: 616 GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
GM VD +++ I+ A + + F KW + D N S QL+QL F
Sbjct: 347 GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406
Query: 670 ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
G K + + + E LP + F++ N ++ E ++TP K+
Sbjct: 407 QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNINQIVKENQRTPLKY 466
Query: 708 RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
+ ++ +G++ P YT +G P +ALK LA G E+ +
Sbjct: 467 TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505
Query: 768 YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
Y G + + Q+ +AC AI+ L E+ SI+ L+ FI+PL ++ +GR+H S
Sbjct: 506 Y-GLIYHHFAGKGEPQKGIDACVAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562
Query: 828 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
+NINTETGRLS+R PNL NQPALEKDRYKIR++FIA GN LIVADYGQLELR+LAH+
Sbjct: 563 ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
CK+M+DAF GGDFHSRT + M+PHI+ ++ G++L+EW + K P PL+K+K
Sbjct: 623 CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDK 676
>gi|428172321|gb|EKX41231.1| hypothetical protein GUITHDRAFT_74910, partial [Guillardia theta
CCMP2712]
Length = 664
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 216/528 (40%), Positives = 298/528 (56%), Gaps = 72/528 (13%)
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHA-DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
+++HN+SFD H+L N+G+++ G + DT+HMARLWD+SR+ GGY L +L D
Sbjct: 2 QIFHNWSFDGHLLANHGIEILGHRSGDTVHMARLWDTSRQGRGGYKLSSLMQDL------ 55
Query: 498 KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER----E 553
+ G TD MK++FGR KLKKDG+ GK+ + LQ + E
Sbjct: 56 -------LGWGKTD--------MKEVFGRFKLKKDGTPGKVVYLPDSLTLQTDPNVTMFE 100
Query: 554 LWISYSAFDSINTLKLYKSLKKKLLEMSWKLDG--------KPVPGKSMFDFYQEYWQPF 605
WI YS +D+I T LY SL+K+L MSW D K +++F FY +W+PF
Sbjct: 101 KWIHYSTYDTICTWYLYFSLRKELENMSWSPDAIVYENELLKMRADRTLFTFYDCFWRPF 160
Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
G+IL ME +GM +D++YL + + A+ ++E F +W CPD KY+N+ S+ Q R
Sbjct: 161 GQILTDMERKGMYIDKDYLYQQAEKAQEDKEKRTESFMQWVRSLCPDGKYININSNPQKR 220
Query: 666 QLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT------------PSKFRNITLR 713
LLF D P R F+V N E ++ P R+I+L
Sbjct: 221 HLLFSSITEPDDAGSREPHMRTFQVDNKVEEEEEREEEEGEEGEVLFLSPPRSKRSISL- 279
Query: 714 SIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVA 773
+G+ L YTATG S G ++ LA A A D G E
Sbjct: 280 -LGLALTPVAYTATGQASTAGQVIQKLAGKPFASPPSYGTA--FKDLGGGE--------- 327
Query: 774 SNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
E + AC+A+++L E +I+ L+S F+LPL + + R+H SLNINTE
Sbjct: 328 ----------EGKAACEALASLLEGEAIEKLLSTFLLPL--PEQTDEASRIHTSLNINTE 375
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS++RPNLQNQPALEKD Y++R+AF A PG LI+ DYGQLELRI+A + C+SMLD
Sbjct: 376 TGRLSSQRPNLQNQPALEKDVYRMRKAFSAPPGRKLIIVDYGQLELRIMAQMTGCRSMLD 435
Query: 894 AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED-KPPVPLLKNK 940
AF+ GGDFHSRTA++MY +I AVE +VLLEW+ D PP P+LK+K
Sbjct: 436 AFEQGGDFHSRTAIDMYRYIAEAVERKEVLLEWNSHDGAPPAPMLKDK 483
>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 211/493 (42%), Positives = 288/493 (58%), Gaps = 65/493 (13%)
Query: 466 MHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFG 525
MHMARLW+SSR +G YSLE+L+ +E ++ K K+IFG
Sbjct: 1 MHMARLWESSRVGKGSYSLESLS----------------------EELYIRKRPYKEIFG 38
Query: 526 RRKLKKDGSAGKISTIAPV----------EELQR--EERELWISYSAFDSINTLKLYKSL 573
+ +K+DG GK + PV ++LQR R WI YSAFD+ T + K L
Sbjct: 39 KPHIKRDGMQGKTIDVPPVIVAFSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKEL 98
Query: 574 KKKLLEMSW---KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
+ L EM W L+G + SM+DFY+ Y++ FG++LV ME G+ VD +L EIE+
Sbjct: 99 ESLLREMFWTSESLNGA-LSELSMWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIER 157
Query: 630 VARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688
ARA E A N+F+ WA ++ D +MNV S Q++QLLF P + LP ER F
Sbjct: 158 EARAALEKARNQFKSWAVAEGGSDLLFMNVHSTAQIQQLLFA--PGFRGGRAGLPREREF 215
Query: 689 KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEY 748
V NT G + GKK P K R I +R +G+ P +T G P ++ LA I
Sbjct: 216 SVENTTGFVEPGKKKPLKNRTILIRGLGI--PPISFTEKGLPQCNAATIQELAGKI---- 269
Query: 749 DCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
D E++E+ A + + AC A++AL V SI+++++ F
Sbjct: 270 ----------DEENVEKSEFGKAFEA----LGGGDRGKAACLALNALSRVNSIETMLNTF 315
Query: 809 ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
ILPLQ +V+ RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y IR+AF+A PGN
Sbjct: 316 ILPLQ--SVADAEQRVHCSLNLNTETGRLSSRNPNLQNQPALEKDVYFIRKAFMAKPGNI 373
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-H 927
L+V+DYGQLELR+LAH+ CK+M++AF+ GGDFHSRTA++MY +I+ + G LLEW
Sbjct: 374 LLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYIKEDIAKGTCLLEWDS 433
Query: 928 GEDKPPVPLLKNK 940
+ +PP PLLK+K
Sbjct: 434 SKGEPPAPLLKHK 446
>gi|428166784|gb|EKX35753.1| hypothetical protein GUITHDRAFT_79451 [Guillardia theta CCMP2712]
Length = 825
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 196/523 (37%), Positives = 281/523 (53%), Gaps = 60/523 (11%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG--PE 402
V ++ AA +V ++ + + ++ ACDTE +D E+PV+ G CFS+Y G
Sbjct: 72 VRTEEDARAALEVTRLMQKRMEKIIFACDTETYGVDPTVESPVEKGSCACFSLYGGRYTT 131
Query: 403 ADFGNGKSC-IWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
A G GKS +WV+ L G +L F +FED KK++HN+SFD+H+L N+G+ V GF
Sbjct: 132 ARRGKGKSNRLWVNTLGEEGEKVLAVFKVWFEDERFKKIFHNWSFDSHILRNHGITVRGF 191
Query: 462 HADTMHMARLWDSSRRTEG-GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISM 520
DT+HMARLWD+SR + G GY L L+ N G+ GK M
Sbjct: 192 AGDTIHMARLWDASRLSTGKGYKLSVLS--------------------NELLGW-GKTEM 230
Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREER----ELWISYSAFDSINTLKLYKSLKKK 576
K++F RKLKKDG+ GK+ + +Q ++ W+ YS +DS+ T LY L+K+
Sbjct: 231 KEVFSVRKLKKDGTPGKVLILRDSCSIQTDDDPKIFRKWVHYSTYDSLCTWYLYYKLRKE 290
Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQE 636
L EMSW P MF FY+ +W+PFGEIL +E G+ +DR+YL + A ++E
Sbjct: 291 LEEMSW----SPDLLLCMFQFYERFWKPFGEILTDIERTGIFIDRDYLRQQAAAAERDKE 346
Query: 637 AAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE--RIFKVPNTE 694
+ FR+W K CPD YMN S+ + LLF K E E + F + NTE
Sbjct: 347 EKLAGFRRWVGKLCPDGIYMNTRSNLHKKHLLFSSKRGLAKAVEEAEEEHYKTFTIDNTE 406
Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
G + EG+ P R I L+ +G L YT G S G + TLA A+ A
Sbjct: 407 GFLEEGRSEPRATREIRLKGLG--LSPVSYTPAGQASTSGSVISTLAGKPFADPPRYGTA 464
Query: 755 HDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQG 814
D G E ++ +E C+A+ L E +++ L+S F++PL
Sbjct: 465 --FKDLG---EGDF----------------GKEVCEALGFLLESENVEKLLSTFLIPL-- 501
Query: 815 SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
++ ++GR+H +LN+NTETGRLS++RPNLQNQPALEKD YK+
Sbjct: 502 PEMTDQHGRIHTALNLNTETGRLSSKRPNLQNQPALEKDVYKV 544
>gi|341609973|gb|AEK81399.1| RxL467 [Phytophthora sojae]
gi|341609975|gb|AEK81400.1| RxL467 [Phytophthora sojae]
gi|341609977|gb|AEK81401.1| RxL467 [Phytophthora sojae]
gi|348687651|gb|EGZ27465.1| hypothetical protein PHYSODRAFT_284102 [Phytophthora sojae]
Length = 471
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 176/421 (41%), Positives = 241/421 (57%), Gaps = 46/421 (10%)
Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
V ++ + A++V+ + HACDTEVA+IDVK PV +G V C S+YSGP+ D
Sbjct: 63 VNLIQDEEGARRVLAKIRELGPGHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 122
Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
+GNG +WVD LD L F F E KVWHNYSFD HVL N+G+ V G D
Sbjct: 123 YGNG-PYVWVDNLDSA-EGTLQLFKDFLESREYLKVWHNYSFDRHVLYNHGINVQGLGGD 180
Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
TMHMARLW+++R GGYSLEALT D ++ + KK MK++F
Sbjct: 181 TMHMARLWNTARFQHGGYSLEALTAD--LLLQRKK-------------------PMKELF 219
Query: 525 GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
G KL+KDGS GK + VEELQR E R+ WI YS +D+ +T L++ L+ KL + W
Sbjct: 220 GIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQHKLDQTFW 279
Query: 583 ------------------KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
+D +P G SM+DFY++Y FGE L +E +GM VD EYL
Sbjct: 280 FENAPKTNAAVNAAAAAAAVDEEPQTG-SMYDFYRQYIILFGECLTDIERKGMHVDLEYL 338
Query: 625 SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
+ +EK A ++ KWAS++C +++ +N+ S Q +QLLF + K + LP
Sbjct: 339 AGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLLFAPYYDEKKKKQVLPA 398
Query: 685 ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI 744
ER F+V NTEG I EGK+ P K RN+T+R +G+ P +TA+G P+ + LK LA N+
Sbjct: 399 ERAFEVENTEGFIEEGKQKPKKKRNMTIRGLGI--PPTHFTASGLPAASAEVLKELAGNV 456
Query: 745 S 745
S
Sbjct: 457 S 457
>gi|340500466|gb|EGR27340.1| hypothetical protein IMG5_197550 [Ichthyophthirius multifiliis]
Length = 876
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 247/474 (52%), Gaps = 78/474 (16%)
Query: 517 KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLK 574
K +MK +F ++K KDG GK V + + + W++YSA D+ T LY+ L
Sbjct: 248 KTNMKQLFAKKKYLKDGREGKTLEFPTVIRMHSDTELINNWVNYSALDAEVTFFLYQVLM 307
Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
KL E+ + K+M D Y +YW PFGE+L +E +G ++ ++L I+ A +
Sbjct: 308 TKLQELETNFENM----KNMKDLYHKYWLPFGELLTDLERKGFEINIQHLENIQVKANED 363
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG---GKPNSK--------------- 676
+F W + P + N S QL+ L F P +K
Sbjct: 364 IINYQKQFLDWVTHIQPQLEQFNPSSVQQLQHLFFAPFKRVPQAKAKGKKSLSILTEKEQ 423
Query: 677 --------DDSES---------------------LPIERIFKVPNTEGVIAEGKKTPSKF 707
DD E +P ++IFKV N + V+ GKK P K
Sbjct: 424 NDINTIYEDDKEGEDNSGYHSDGRKKAVRQIIDEIPQKKIFKVLNIKNVLEIGKKRPLKH 483
Query: 708 RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
++ + +G+ + YT TG P+V LK LA G E +
Sbjct: 484 TDMEIEGLGLQAIS--YTETGMPAVDLPVLKILA-------------------GNPENGD 522
Query: 768 YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
+ G + + E+ A++A +I AL ++ ++L+ FI+PL+ + + KN R+HCS
Sbjct: 523 F-GKIGEFYRKQGQEELAQKASKSIQALIQLKQTETLLQTFIIPLRET--ADKNNRIHCS 579
Query: 828 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
LNINTETGR+SAR+PNL NQPAL+KD YKIR AF A GN LIVADYGQLELRILAH+
Sbjct: 580 LNINTETGRISARKPNLLNQPALDKDVYKIRSAFQASKGNKLIVADYGQLELRILAHMTK 639
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
CK+MLDAF GGDFHSRTAM MYP I+ +E G++LLEW + PP PLLK+K
Sbjct: 640 CKAMLDAFHKGGDFHSRTAMTMYPEIKKEIEEGKLLLEWDKNKGSPPAPLLKDK 693
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 3/128 (2%)
Query: 361 LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGG 420
L K VHA DTE ID+K E+ V +G++IC S Y G + DFGNG +++D
Sbjct: 31 LLQSLKDRVHAWDTETIDIDLKTESAVGNGKIICASAYCGLDVDFGNGPR-LFIDNF-AQ 88
Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
+L+N F + ED KKVWHNY FD H+ N+G+ V GF DTMHM RL D SR +
Sbjct: 89 NTNLINIFKEYLEDEKYKKVWHNYGFDRHIFYNHGINVKGFGGDTMHMTRLIDPSRGPK- 147
Query: 481 GYSLEALT 488
YSL +++
Sbjct: 148 EYSLSSIS 155
>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
Length = 1473
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 204/361 (56%), Gaps = 42/361 (11%)
Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
V +V A+KVV +L + +ACDTEV++I++K PV HG V C SIY GP+
Sbjct: 624 GVQIVAGREKARKVVKILMDN-PDAFYACDTEVSEINLKDHGPVGHGRVTCISIYGGPDL 682
Query: 404 DFGNGKSCI-WVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL-------ENYG 455
DFG G I WVD L G L EF PFF KKVWHNY FD HV+ E
Sbjct: 683 DFGEGPGKILWVDNL-GAAAGTLEEFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQR 741
Query: 456 LKVSGFHADTMHMARLWDSSRRT---EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDE 512
+ GF DTMHMARLWD+S + G+SLEAL+ K++ E ++
Sbjct: 742 IDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLEALS--LKLLGEGQR------------- 786
Query: 513 GFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLY 570
K MK++FG KLKKDG+ G + + P++E+Q E R +I YSA+D+ T ++
Sbjct: 787 ----KTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYDAQATWLVH 842
Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
+ L +KL EMSWK G +M DFY+ Y+ PFGE+L ME G+ V+ ++YL +IE
Sbjct: 843 RELMQKLREMSWK------DGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKDYLQDIEV 896
Query: 630 VARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFK 689
AR +++ A F W K P A+ +N S TQ++ LLFGG N K E LP+ R+FK
Sbjct: 897 QARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLFGGATNPK-TKEKLPVRRVFK 955
Query: 690 V 690
+
Sbjct: 956 I 956
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 160/236 (67%), Gaps = 26/236 (11%)
Query: 705 SKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTE 764
+K+R +T+ S+ + PT++ TA G P+V D L LA N E
Sbjct: 1077 TKYRELTISSVNMK-PTKV-TAAGSPAVSMDVLNHLAGNPH------------------E 1116
Query: 765 ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
+ GA + F E +EAC+A+ ALC + S+D+++SNF+ PLQ + + RV
Sbjct: 1117 DPPKYGAAYGH---FGGGLEGKEACEALYALCNMGSVDTMVSNFLQPLQ--ELVDEKSRV 1171
Query: 825 HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
HCSLN+NTETGRLSAR+PNLQNQPALEKD+YKIR AF A GN+L+VADYGQLELR+LAH
Sbjct: 1172 HCSLNLNTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGNTLVVADYGQLELRLLAH 1231
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKN 939
+ +CKSM+ AFK GG FHSRTA+ M+ H++ AV+ G+VLLEW + + +PP PL+K+
Sbjct: 1232 ITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKD 1287
>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
Length = 940
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 189/637 (29%), Positives = 297/637 (46%), Gaps = 98/637 (15%)
Query: 371 ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
A DTE +++ + TP GE++C + + G + DFG+G ++VD G R +L+ F
Sbjct: 148 AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 205
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS-------------- 475
+FE+P+ +K++HN++ D HVL +G+ V G ADT ++ARL+DSS
Sbjct: 206 SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVQPEKPP 265
Query: 476 ---RRTEGGYSLEALT---GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
R+++ + EAL GD + S ++ G +G+ K + +FG
Sbjct: 266 LLLRKSKTSTTKEALIDEGGD--IFSTPLNDCEQHSGPG---KGYQLK-RLVSLFGIAPK 319
Query: 530 K----KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--K 583
+ K+ AG++ E+ W+ Y+A D+ T LY+ L L W +
Sbjct: 320 EPPSFKEKFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLYRRLTDTLRGQEWCTE 379
Query: 584 LDGKPV--------------------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
L +P+ G SM DF ++++PF E+LV++E G +REY
Sbjct: 380 LHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREY 439
Query: 624 LSEIEKVARAEQEAAVNRFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNS 675
L + A+A+ + + FR A P A+++N S Q+RQLLFG P+
Sbjct: 440 LIQQLTAAQADLQRHKDAFRTIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDE 498
Query: 676 KDDSESLPIERIFKVPNTEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------T 725
D + R+ E + E PS ++ +G+ +Y
Sbjct: 499 PDHLRWV-ARRVRAGEEAEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYA 557
Query: 726 ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEA 785
+GWP V L+ A G E Y A + E A
Sbjct: 558 PSGWPKVESAILRAFA-------------------GEPHEGNYGVAYQQLEPVRGHEHAA 598
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPN 843
C + L I + I++ + PL ++G R+H SL ++T TGRL R+PN
Sbjct: 599 -SVCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPN 657
Query: 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
LQN P+ D Y IR+AF A PGN+LIV DY QLELRILAH++ C+SM+ GGD HS
Sbjct: 658 LQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHS 717
Query: 904 RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKNK 940
+ A++++P + AV G V+++ E P +P +K K
Sbjct: 718 QCAVDLFPEVAEAVANGSVVID-DAEAHPGIPSVKTK 753
>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
Length = 842
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 179/602 (29%), Positives = 272/602 (45%), Gaps = 94/602 (15%)
Query: 371 ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
A DTE +++ + TP GE++C + + G + DFG+G ++VD G R +L+ F
Sbjct: 96 AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 153
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT------EGGYS 483
+FE+P+ +K++HN++ D HVL +G+ V G ADT ++ARL+DSS +
Sbjct: 154 SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSNDL 213
Query: 484 LEALTGDRKVMSEDKKAYQ-KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
L L RK ++ D N F G++ + + +K G
Sbjct: 214 LVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGE-------- 265
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--KLDGKPV----------- 589
W+ Y+A D+ T LY+ L L W +L +P+
Sbjct: 266 ------------WLKYAADDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTF 313
Query: 590 ---------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
G SM DF ++++PF E+LV++E G +REYL + A+A+ E
Sbjct: 314 NGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKE 373
Query: 641 RFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPN 692
FR A P A+++N S Q+RQLLFG P+ D + R+
Sbjct: 374 AFRMIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDEPDHLRWV-ARRVRAGEE 431
Query: 693 TEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------TATGWPSVGGDALKTLAR 742
E + E PS ++ +G+ +Y +GWP V L+ A
Sbjct: 432 AEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYAPSGWPKVESAILRAFA- 490
Query: 743 NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
G E Y A + E A C + L I
Sbjct: 491 ------------------GEPHEGNYGVAYQQLEPVRGHEHAA-SVCRLLWHLQRSIRIS 531
Query: 803 SLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
+ I++ + PL ++G R+H SL ++T TGRL R+PNLQN P+ D Y IR+A
Sbjct: 532 AAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNPPSAHNDLYSIRKA 591
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
F A PGN+LIV DY QLELRILAH++ C+SM+ GGD HS+ A++++P + AV G
Sbjct: 592 FSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANG 651
Query: 921 QV 922
V
Sbjct: 652 SV 653
>gi|387192342|gb|AFJ68650.1| DNA polymerase I [Nannochloropsis gaditana CCMP526]
Length = 470
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 164/243 (67%), Gaps = 28/243 (11%)
Query: 699 EGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLD 758
E +K K+ N+T+ +G L E +TA G P+V L+ LA N S
Sbjct: 70 ETQKKARKYINLTIHGLG--LTPETFTAAGAPAVSAAVLRKLAGNPS------------- 114
Query: 759 DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
+G S K F +E EAC A+ ALC + SID+++SNF+LPLQ +++
Sbjct: 115 ----------EGVWGSAYKHFNEGKEGEEACVALDALCAMGSIDTMLSNFLLPLQ--DLA 162
Query: 819 GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
+ RVHCSLN+NTETGRLSARRPNLQNQPALEKD+YKIR+AF++ P SLIVADYGQLE
Sbjct: 163 DDDSRVHCSLNLNTETGRLSARRPNLQNQPALEKDQYKIRKAFVSEPNQSLIVADYGQLE 222
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLL 937
LR+LAH+ C+SM+ AFK GG FHSRTA+ M+ H+R AVE+G+VLLEW + + KPP PLL
Sbjct: 223 LRLLAHITKCQSMIQAFKEGGCFHSRTAVGMFEHVRKAVESGEVLLEWDYAKGKPPAPLL 282
Query: 938 KNK 940
K+K
Sbjct: 283 KDK 285
>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
Length = 988
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 177/287 (61%), Gaps = 38/287 (13%)
Query: 670 GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGW 729
G K + + + + +P + FKV N +G+I EGKK P K ++ + +G+++ + T +G
Sbjct: 541 GRKKSVRKEEDDIPQTKAFKVLNIKGIIPEGKKKPPKQLDMNITGLGLEVIS--LTDSGM 598
Query: 730 PSVGGDALKTLARN-ISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFAT------- 781
P+ LK LA N Y + G + NN++ A
Sbjct: 599 PAADLPVLKILAGNPKKGNYGAI------------------GKLLKNNQLAAKVYNQIGE 640
Query: 782 -------EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTET 834
E+ + A AI +L ++ +++L++ FI+PL+ ++ K+GR+HCSLN+NTET
Sbjct: 641 YYKQKGDEEMGKRASHAIESLIQLKQVETLLTTFIIPLR--ELADKDGRIHCSLNMNTET 698
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+SAR+PNL NQP+ +KD YKIR AF A GN LIVADYGQLELRILAH+ NCK+M++A
Sbjct: 699 GRISARKPNLMNQPSHDKDVYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEA 758
Query: 895 FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
FK GGDFHSRTAM MYP ++ +E G++LLEW + +PP PLLK+K
Sbjct: 759 FKMGGDFHSRTAMGMYPKLKEEIEKGELLLEWDKSQGEPPAPLLKDK 805
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 307 NPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYS---------NVMVVDNVSAAKKV 357
NP N G K +SE L K +FY+ +V N A KV
Sbjct: 26 NPSNSQVLGDYVIKSKMSGHSSENL---YEKYKNFYNVQIEKINIPGTTIVKNRDQAHKV 82
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
V +L + + HA DTE +D K E+P+ G++IC S + G + DFGNG +++D
Sbjct: 83 VKILKS-LPNREHAWDTETIDVDAKLESPIGKGKIICASAFCGIDVDFGNGPR-LFIDNF 140
Query: 418 DGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
DL+ F + ED KK+WHNY FD H+ N+G+ V GF DTMH+ARL D SR
Sbjct: 141 -AQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNHGINVQGFGGDTMHLARLADPSRG 199
Query: 478 TEGGYSLEALT 488
+ YSL +T
Sbjct: 200 PK-EYSLANVT 209
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 517 KISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLK 574
K +MK +FG++K KDG GK + E E W+ YS D+ T +++ LK
Sbjct: 301 KTNMKQLFGKKKYLKDGKEGKTIEFPNTIRMHTDPELLEKWVHYSCLDAEITFFVFQVLK 360
Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
+L +S + K+M D Y +YW+PFGEIL +E G ++ E+L +I A +
Sbjct: 361 DELKSLSTNFEDM----KNMLDLYNKYWKPFGEILTDLERRGFELNLEHLDKIRVQAEND 416
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
+F W + N S QL+QL F
Sbjct: 417 MIKLEKQFLDWVCSTQQGLEQFNYSSAQQLQQLFFA 452
>gi|397615480|gb|EJK63460.1| hypothetical protein THAOC_15874 [Thalassiosira oceanica]
Length = 676
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 163/236 (69%), Gaps = 24/236 (10%)
Query: 706 KFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765
K+ ++T+ S+G+ +P + +T G PS D L+ LA + A+ A++
Sbjct: 279 KWVDVTITSLGM-VP-DKFTVGGAPSATADVLRGLAGDPFADPPKYGKAYEF-------- 328
Query: 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVH 825
E K A + ++ AC A +L + SID++I+NF+ LQ + V +N RVH
Sbjct: 329 FEAKKAGSGHD-----------ACVAFYSLTAIGSIDTMIANFLTSLQ-ALVDDRN-RVH 375
Query: 826 CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S+NINTETGRLS+R+PNLQNQPALEKD+YKIRQAFIA PGN LIVADYGQLELR+LA +
Sbjct: 376 NSININTETGRLSSRKPNLQNQPALEKDKYKIRQAFIASPGNRLIVADYGQLELRLLASM 435
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKNK 940
NC SM++AFKAGGDFHSRTA++M+ +I++AVE+G+V+LEW + +P P++K+K
Sbjct: 436 TNCVSMIEAFKAGGDFHSRTALDMFKYIQDAVESGEVILEWDYANGEPTKPMVKDK 491
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSD 661
+PFGE+L ME G+L+ +YL+ +E AR ++ V FR+WA++ PD MN+GS
Sbjct: 2 RPFGELLTDMERRGILIATDYLAGVEVQARKDRVEHVETFRQWAAEQIGPDGLAMNLGSS 61
Query: 662 TQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVD 718
TQL LFGG N K S ++R+F+ E I + + R+ LR D
Sbjct: 62 TQLSTFLFGGAANPKTKEHS-EVQRVFRTKREE--IPDDAMEAYRERDAKLRETAPD 115
>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
Length = 1461
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 173/417 (41%), Gaps = 143/417 (34%)
Query: 372 CDTEVAKIDVKQETPVDHGEVICFSIYSGPEADF-------------------------- 405
CDTEVA IDV ETP+ HG V+CFSIY G + DF
Sbjct: 636 CDTEVAFIDVSSETPIGHGAVLCFSIYGGDDLDFSECERGVTAVAATTAATSITTLGSAS 695
Query: 406 ------------GNG-----------KSCIWVDL-----LDGGGRDL------------- 424
G+G K IWVD+ LD GR +
Sbjct: 696 FGATTHGSMAALGSGDAGSAAGGPVRKDRIWVDIWSEVELDEEGRPIMDGRYVRLKPHHP 755
Query: 425 -LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
L+EF FFED S+KKVWHNY FD HVLEN G+ +GF DT+HMARL D+SR Y
Sbjct: 756 ILDEFKRFFEDESVKKVWHNYGFDRHVLENMGICCAGFGGDTLHMARLADASRSGRRTYG 815
Query: 484 LEALTGDRKVM----------------------------------SEDKKAYQKDMSKGN 509
L+ LT D +M + A + + G
Sbjct: 816 LDNLTADHNIMRHFVPHRAEKPPRVLTGGVRRAARMSGGGDTAAAAAAAAAAAEAAAPGG 875
Query: 510 TDEG----------FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWIS 557
T G K+SMKD FG KL + G GK+ + +++L E R WI
Sbjct: 876 TSPGDKRAAEVAKLVRAKMSMKDRFGLLKL-RGGVPGKVPELPAMQQLHSLELFRPTWID 934
Query: 558 YSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGM 617
YSA D+ T +L ++L+ L +W+++ P + +
Sbjct: 935 YSALDAKATWQLREALEGLLRLEAWEME--PALARQLG---------------------- 970
Query: 618 LVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
+L+E ++ A A++EAA+ F +WA P A+ MN S +Q+R LLF P
Sbjct: 971 ----AHLAEAQRQAEADKEAAMREFLEWADSKVPGARCMNAHSGSQIRMLLFPDHPG 1023
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 100/166 (60%), Gaps = 34/166 (20%)
Query: 758 DDSGCTEETEYKGAVASNNKIFAT---EQEAREACDAISALCEVCSIDSLISNFILPLQG 814
+D+ E E + +++A +E AC A+ ALCE+ +I+ L+S FI+PLQ
Sbjct: 1296 EDAALLEVLEKEAKAKGLGRLYAACGGGEEGLRACIAVEALCEINAIEKLLSAFIIPLQS 1355
Query: 815 ---------SNVSGKNG------RVHCSLNINTETGRLSARR--------------PNLQ 845
N G++ RVHCSLNINTETGRLSARR PNLQ
Sbjct: 1356 DATSTTTVLPNPPGRDTPSRAVHRVHCSLNINTETGRLSARRHVCCEMRLHISAVVPNLQ 1415
Query: 846 NQPALEKDRYKIRQAFIAVP--GNSLIVADYGQLELRILAHLANCK 889
NQPALEKDRYK+R+AF A GN+L+VADYGQLELRILAH+ NC+
Sbjct: 1416 NQPALEKDRYKVRRAFTADTEGGNTLVVADYGQLELRILAHMTNCQ 1461
>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
Length = 259
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 92/145 (63%), Gaps = 36/145 (24%)
Query: 797 EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
+V +ID L+S FI+PLQ PALEKDRYK
Sbjct: 6 QVNAIDKLLSAFIIPLQ----------------------------------PALEKDRYK 31
Query: 857 IRQAFIA--VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
+RQAF A G++L+VADYGQLELR+LAH+ +CKSML+AF GGDFHSRTA+ MY HI+
Sbjct: 32 VRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRTAVGMYDHIK 91
Query: 915 NAVETGQVLLEWHGEDKPPVPLLKN 939
+A+ +VLLEW GE + P+PL+K+
Sbjct: 92 DAIRDNKVLLEWDGEGESPLPLVKD 116
>gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
Length = 498
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 138/318 (43%), Gaps = 74/318 (23%)
Query: 344 NVMVVDNVSAAKKVVWML-----------TNKYKHLV----HACDTEVAKIDVKQETPVD 388
+V++VD A+ VV L N+ V ACDTEVA IDV ETPV
Sbjct: 164 DVLIVDTPEVARAVVDRLISAADTPYPGAANRTNPPVPCRYFACDTEVAFIDVTSETPVR 223
Query: 389 HGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDN 448
+L EF FFE +KKVWHNY FD
Sbjct: 224 LKP-----------------------------HHPILAEFKRFFEHAGVKKVWHNYGFDR 254
Query: 449 HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV----MSEDKKAYQKD 504
HVLEN G+ +GF DT+HMARL D+SR + Y L++LT DR V
Sbjct: 255 HVLENMGIAAAGFGGDTLHMARLADASRSGKKTYGLDSLTSDRDVSGGVWDGGGGGTWLG 314
Query: 505 MSKGNTDEGFM-----GKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWIS 557
S G E + K+ MK+ FG +L+ DG A K+ + P+ L R WI
Sbjct: 315 SSPGAKAEALVRDMVRAKLGMKERFGMYRLRGDGPA-KVPELPPIHRLHDHPRFRPTWID 373
Query: 558 YSAFDSINTLKLYKSLKKKL-------LEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
YSA D+ T +L ++L+ KL + P+ W E+L
Sbjct: 374 YSALDAKATWQLREALEAKLRAERVSSSSCTCGTSTAPI-----------GWTLVRELLT 422
Query: 611 KMETEGMLVDREYLSEIE 628
+ME GM+V+RE+L + +
Sbjct: 423 EMERRGMMVNREHLRQAQ 440
>gi|387201585|gb|AFJ68910.1| mitochondrial dna polymerase a, partial [Nannochloropsis gaditana
CCMP526]
Length = 208
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 9/178 (5%)
Query: 520 MKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKKKL 577
MK++FG + +KDGS G I + E+Q + R WI YSA D+ +T L + L ++L
Sbjct: 1 MKELFGVKSTRKDGSEGNSVRIPELREIQADPTLRLKWIGYSALDARSTWALREELARRL 60
Query: 578 LEMSWK---LDGKP-VPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEKVAR 632
+ W+ LD G +M+DFY Y+ PFG +L ME G+ VD + YL+ ++ A
Sbjct: 61 QAVHWEREPLDASGGRDGATMYDFYHRYFVPFGNVLTDMERVGIRVDAKNYLAAVQIQAE 120
Query: 633 AEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKV 690
++EAA+ RF WASK+ +Y N S Q++ LFGG SKD + +P R FK+
Sbjct: 121 KDKEAALERFLAWASKYDASMRYSNPASSAQMQTFLFGGSKTSKD--KLVPRSRTFKM 176
>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
Length = 894
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 142/552 (25%), Positives = 214/552 (38%), Gaps = 180/552 (32%)
Query: 372 CDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE---- 427
DTE +DV E++ S+ GK+ D G LL E
Sbjct: 323 IDTETTSLDVMM------AEIVGISL------AIEEGKAAYIPLTHDDGSPQLLREEVLT 370
Query: 428 -FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
P E+P+IKK+ N +D VL N+G+ + G + DTM + + +S G + +++
Sbjct: 371 ALNPILENPTIKKIGQNLKYDYSVLRNHGITLKGIYYDTMLESYVLNSG---SGRHDMDS 427
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
L K + +Y++ KG ++L+ D PVE+
Sbjct: 428 LA--LKYLGHKTISYEEIAGKG-----------------AKQLRFDQ--------IPVEK 460
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
+Y+A D+ TL+L+ L P+ +S+ + P
Sbjct: 461 AG--------AYAAEDADITLQLHHKLY-------------PLIPESVHHVFGNIEMPLV 499
Query: 607 EILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+L ME G+L+D L + E++ E+EA H K N+ S
Sbjct: 500 TVLADMERMGVLIDSATLKQHGERLKERIRTLEEEAL----------HLA-GKPFNLNSP 548
Query: 662 TQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPT 721
QL+++LF DS LP +IA KTP
Sbjct: 549 KQLQEILF--------DSHKLP------------IIA---KTP----------------- 568
Query: 722 EMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFAT 781
TG PS L+ LA YD Y+ A
Sbjct: 569 -----TGQPSTAEAVLQELA------YD------------------YRLA---------- 589
Query: 782 EQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
+ + E S+ L+S +I LP ++ K RVH S N T TGRLS
Sbjct: 590 -----------AVILEYRSLTKLVSTYIDALP---KKINPKTNRVHTSYNQAVTATGRLS 635
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ IR AFIA N ++ ADY Q+ELRI+AHL+ +++L AF G
Sbjct: 636 SSEPNLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFANG 695
Query: 899 GDFHSRTAMNMY 910
D H+ TA ++
Sbjct: 696 WDVHAATASEIF 707
>gi|374261140|ref|ZP_09619727.1| DNA polymerase I [Legionella drancourtii LLAP12]
gi|363538527|gb|EHL31934.1| DNA polymerase I [Legionella drancourtii LLAP12]
Length = 856
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 137/518 (26%), Positives = 207/518 (39%), Gaps = 171/518 (33%)
Query: 418 DGGGRDLLNE-FA---PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
DG + L +E FA P E+P+IKK+ N +D VL+N+G+ + G DTM + + +
Sbjct: 320 DGSVQLLRDEVFAAIKPILENPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILN 379
Query: 474 SS--RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
S+ R SL+ L G + + ED GK G ++L+
Sbjct: 380 SNAGRHDMDTLSLKYL-GHKTITFED----------------IAGK-------GAKQLRF 415
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
D PV++ Y+A D+ TL+L+ L P+
Sbjct: 416 DQ--------IPVDKAS--------VYAAEDADITLQLHHKLY-------------PMMA 446
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWA 646
+S+ + + P +L +ME G+L+D L + E++ E+EA + A
Sbjct: 447 ESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAI-----QLA 501
Query: 647 SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK 706
K N+ S QL+++LF + K+P VIA KTP
Sbjct: 502 GKP------FNLSSPKQLQEILFNEQ----------------KIP----VIA---KTP-- 530
Query: 707 FRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEET 766
TG PS L+ LA +D A L+ G T+
Sbjct: 531 --------------------TGQPSTAESVLQELA------FDYRLAAVILEHRGLTK-- 562
Query: 767 EYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRV 824
L+S +I LP ++ + GRV
Sbjct: 563 -------------------------------------LVSTYIDALP---KKINAETGRV 582
Query: 825 HCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILA 883
H S N TGRLS+ PNLQN P ++ IR AFIA P ++ ADY Q+ELRI+A
Sbjct: 583 HTSYNQAVAATGRLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMA 642
Query: 884 HLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
HL+ +++L AF G D H+ TA ++ R V + Q
Sbjct: 643 HLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQ 680
>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Sulfurimonas gotlandica GD1]
gi|373868665|ref|ZP_09605063.1| DNA polymerase I [Sulfurimonas gotlandica GD1]
gi|207084142|gb|EDZ61432.1| DNA polymerase I [Sulfurimonas gotlandica GD1]
gi|372470766|gb|EHP30970.1| DNA polymerase I [Sulfurimonas gotlandica GD1]
Length = 905
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNL 844
++ + IS+L E I L S +I PL ++ K GR+H S + T TGRLS++ PNL
Sbjct: 598 KDKHEIISSLLEYREIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTGTATGRLSSKNPNL 657
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN PA KIR+AF+A G LI DY Q+ELR+LAH + ++DAF+A D H +
Sbjct: 658 QNIPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQ 717
Query: 905 TAMNMY 910
TA+ ++
Sbjct: 718 TAIALF 723
>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
Length = 891
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 125/511 (24%), Positives = 198/511 (38%), Gaps = 161/511 (31%)
Query: 419 GGG------RD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
GGG RD ++ + P ED ++ KV N +D VL G+ + G ADTM + L
Sbjct: 355 GGGAEEQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRAGIALRGVVADTMLQSYL 414
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+ R+ G L+AL D + +Y + G GF
Sbjct: 415 LYPAARSHG---LDALAADH--LGYKMISYSEVAGTGKKQIGF----------------- 452
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
D A ++T Y+A D+ TL+LY+ +L DG
Sbjct: 453 DEVALDVAT----------------RYAAEDADITLQLYQRFDAEL-------DG----- 484
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
++ + ++ P ++L+ ME G+ VDRE L
Sbjct: 485 -TLRELFETVEMPLLQVLIDMEWWGVRVDRERL--------------------------- 516
Query: 652 DAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
DA ++ G T ++QL ++I+++ E I +P + I
Sbjct: 517 DA--LSAGFSTSIKQLE----------------QQIYELAGEEFNI----NSPKQLGVIL 554
Query: 712 LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGA 771
+ DLP T TGW S D LK LA
Sbjct: 555 FEKL--DLPHGKKTKTGW-STAVDVLKNLA------------------------------ 581
Query: 772 VASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN 829
+ D ++ + + S+ L + LPL + +GR+H S N
Sbjct: 582 ---------------DKHDVVALILQYRSLAKLKGTYTDALPLL---IHPDSGRIHTSFN 623
Query: 830 -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
T TGRLS+ PNLQN P ++ IR+AF+ G L+ ADY Q+ELR++AH+A+
Sbjct: 624 QAVTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADE 683
Query: 889 KSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ ++F+ G D H RTA ++ + V++
Sbjct: 684 PILQESFRQGEDIHQRTASEIFSVFPDMVDS 714
>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
Length = 471
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 7/142 (4%)
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
M+D Y W PFG +L ME GM VDR +L+ ++ A+A+Q+ A +RFR+WA++ DA
Sbjct: 31 MWDVYCRAWLPFGALLTDMEAVGMAVDRSHLAAAQQQAQADQQRAQDRFRRWAARKVGDA 90
Query: 654 KYMNVGSDTQLRQLLFGGKPNSKDD--SESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
++MNVGS Q++ LLF G N D + LP+ER+FK+PN G++ E K P K +I
Sbjct: 91 QHMNVGSGAQVQTLLFAGAENRDKDKGKDPLPLERVFKIPNAMGLMGEKDKRPKKMWDIR 150
Query: 712 LRSI---GVDLPT--EMYTATG 728
L S+ G P E++T G
Sbjct: 151 LHSVWGQGTKSPLTPEVFTPAG 172
>gi|393774005|ref|ZP_10362387.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
gi|392720591|gb|EIZ78074.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
Length = 956
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 768 YKGAVASNNKIFATEQE-----AREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG 822
YKG + ++T+Q A + S + E + L S + LQ + ++ G
Sbjct: 622 YKGGRKGKSGQYSTDQAILEGLAGQGAVVASKVLEWRQLSKLRSTYTEALQAA-INPATG 680
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + + +TGRLS+ PNLQN P + +IR F+A PGN L+ ADY Q+ELR+
Sbjct: 681 RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRHCFVAEPGNVLLAADYSQIELRL 740
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AH+A+ S+ +AF AG D HSRTAM M+
Sbjct: 741 AAHMADVPSLKEAFAAGEDIHSRTAMEMF 769
>gi|60679700|ref|YP_209844.1| DNA polymerase I [Bacteroides fragilis NCTC 9343]
gi|375356484|ref|YP_005109255.1| putative DNA polymerase I [Bacteroides fragilis 638R]
gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
Length = 941
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ D I + E + L+S +I L ++ K GR+H S N T
Sbjct: 620 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 678
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M+D
Sbjct: 679 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 739 AFLSGYDIHAATAAKIY 755
>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
Length = 941
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ D I + E + L+S +I LP ++ K GR+H S N
Sbjct: 620 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 676
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M
Sbjct: 677 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 736
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 737 IDAFLSGYDIHAATAAKIY 755
>gi|423270007|ref|ZP_17248979.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
gi|423272538|ref|ZP_17251485.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
gi|392700049|gb|EIY93217.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
gi|392708804|gb|EIZ01908.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
Length = 935
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ D I + E + L+S +I LP ++ K GR+H S N
Sbjct: 614 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP---QLINPKTGRIHTSFNQTV 670
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M
Sbjct: 671 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 730
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 731 IDAFLSGYDIHAATAAKIY 749
>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
gi|383116450|ref|ZP_09937198.1| DNA polymerase I [Bacteroides sp. 3_2_5]
gi|423259554|ref|ZP_17240477.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
gi|423263472|ref|ZP_17242475.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
gi|382973754|gb|EES88569.2| DNA polymerase I [Bacteroides sp. 3_2_5]
gi|387777134|gb|EIK39234.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
gi|392706894|gb|EIZ00014.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
Length = 935
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ D I + E + L+S +I L ++ K GR+H S N T
Sbjct: 614 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 672
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M+D
Sbjct: 673 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 733 AFLSGYDIHAATAAKIY 749
>gi|423248112|ref|ZP_17229128.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
gi|423253061|ref|ZP_17233992.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
gi|392656961|gb|EIY50598.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
gi|392660532|gb|EIY54142.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
Length = 935
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ D I + E + L+S +I L ++ K GR+H S N T
Sbjct: 614 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 672
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M+D
Sbjct: 673 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 733 AFLSGYDIHAATAAKIY 749
>gi|336407634|ref|ZP_08588130.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
gi|335944713|gb|EGN06530.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
Length = 964
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ D I + E + L+S +I L ++ K GR+H S N T
Sbjct: 643 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 701
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M+D
Sbjct: 702 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 761
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 762 AFLSGYDIHAATAAKIY 778
>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
Length = 941
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ D I + E + L+S +I LP ++ + GR+H S N
Sbjct: 620 YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 676
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M
Sbjct: 677 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNM 736
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 737 IDAFLSGYDIHAATAAKIY 755
>gi|423281298|ref|ZP_17260209.1| DNA polymerase I [Bacteroides fragilis HMW 610]
gi|404583206|gb|EKA87888.1| DNA polymerase I [Bacteroides fragilis HMW 610]
Length = 964
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ D I + E + L+S +I LP ++ + GR+H S N
Sbjct: 643 YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 699
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M
Sbjct: 700 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNM 759
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 760 IDAFLSGYDIHAATAAKIY 778
>gi|424665766|ref|ZP_18102802.1| DNA polymerase I [Bacteroides fragilis HMW 616]
gi|404574019|gb|EKA78770.1| DNA polymerase I [Bacteroides fragilis HMW 616]
Length = 935
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ D I + E + L+S +I LP ++ + GR+H S N
Sbjct: 614 YVTSEEVLESLRNRHDVIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQTV 670
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M
Sbjct: 671 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNM 730
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 731 IDAFLSGYDIHAATAAKIY 749
>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
Length = 901
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E ++ L S + LPLQ V+ + GRVH S + T TGRLS+ PNLQN P
Sbjct: 600 LLEYRALSKLKSTYTDRLPLQ---VNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRS 656
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQAFIA PG L+ ADY Q+ELRI+AHL++ + +L AF+AG D H RTA ++
Sbjct: 657 AEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIF 715
>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
Length = 968
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ + ++GRVH ++ T TGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ AD
Sbjct: 686 AQIDRRDGRVHTDFSMAVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAAD 745
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAHLA+ S+ DAF G D HSRTA +++
Sbjct: 746 YSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIF 782
>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
Length = 874
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 13/155 (8%)
Query: 761 GCTEETEYKGAVASNNKIFATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSN 816
G T + + G AS T Q+A E + + E ++ L S ++ PL
Sbjct: 542 GLTPKGKTPGGAAS------TSQDALERLAGSNPLVDRILEFRKLEKLRSTYLDPL--PK 593
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ +GR+H +LN + T TGRLS+ PNLQN P ++R+ F+A PG +L+ ADY
Sbjct: 594 LADADGRIHTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFVAGPGKTLVAADYS 653
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAHL+ ++L AF AG D H+RTA ++
Sbjct: 654 QIELRVLAHLSGEPALLSAFAAGADIHARTASLLF 688
>gi|423282583|ref|ZP_17261468.1| DNA polymerase I [Bacteroides fragilis HMW 615]
gi|404582151|gb|EKA86846.1| DNA polymerase I [Bacteroides fragilis HMW 615]
Length = 964
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ D I + E + L+S +I L ++ + GR+H S N T
Sbjct: 643 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPQTGRIHTSFNQTVTA 701
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G S ADY Q+ELRI+AHL+ K+M+D
Sbjct: 702 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 761
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 762 AFLSGYDIHAATAAKIY 778
>gi|341614026|ref|ZP_08700895.1| DNA polymerase I [Citromicrobium sp. JLT1363]
Length = 955
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 768 YKGAVASNNKIFATEQEAREACDAISA-----LCEVCSIDSLISNFILPLQGSNVSGKNG 822
YKG + ++T+Q E DA A + E + L S + LQ + ++ + G
Sbjct: 616 YKGGRKGKSGQYSTDQAMLEKLDAQGAPIATKVLEWRQLAKLKSTYTDALQQA-INARTG 674
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +TGRLS+ PNLQN P + +IRQAF+A GN L+ ADY Q+ELR+
Sbjct: 675 RVHTSYSLTGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADDGNVLLAADYSQIELRL 734
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
AH+A+ + +AF AG D H+RTA M+ +
Sbjct: 735 AAHMADVAPLREAFAAGEDIHNRTAQEMFGEV 766
>gi|402823448|ref|ZP_10872872.1| DNA polymerase I, partial [Sphingomonas sp. LH128]
gi|402262998|gb|EJU12937.1| DNA polymerase I, partial [Sphingomonas sp. LH128]
Length = 522
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E+ A E + + E + L S + LQ + ++ + GRVH S + + +TGRLS+
Sbjct: 207 EKLAAEGEVVATKVLEWRQLSKLRSTYTEALQAA-INPETGRVHTSYSLVGAQTGRLSST 265
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR F+A PGN L+ ADY Q+ELR+ AH+A+ S+ +AF AG D
Sbjct: 266 DPNLQNIPIRTEIGRQIRHCFVAEPGNVLLAADYSQIELRLAAHMADVPSLKEAFAAGED 325
Query: 901 FHSRTAMNMY 910
HSRTAM M+
Sbjct: 326 IHSRTAMEMF 335
>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
Length = 945
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E A + + + + E + L S + LQ + ++ GRVH S + + +TGRLS+
Sbjct: 630 EGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAA-INPHTGRVHTSYSLVGAQTGRLSSN 688
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR AF+A PGN L+ ADY Q+ELR+ AH+A+ ++ +AF AG D
Sbjct: 689 EPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAAGED 748
Query: 901 FHSRTAMNMY 910
H+RTAM M+
Sbjct: 749 IHARTAMEMF 758
>gi|373121807|ref|ZP_09535674.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
gi|422330008|ref|ZP_16411032.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
gi|371655099|gb|EHO20455.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
gi|371664786|gb|EHO29955.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
Length = 861
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K+G++H N I T+TGRLS+ PNLQN +++ +IR+AF+A G+ L+ ADY Q+E
Sbjct: 584 KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
LR+LAH+AN + M+DAF G D H++TAM ++ +AV+
Sbjct: 644 LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD 683
>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
Length = 950
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A L E + L S + LPL ++ K GRVH
Sbjct: 626 KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 681 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN K ML AF G D H TA ++
Sbjct: 741 ANDKGMLKAFAEGKDIHRSTASEIF 765
>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
Length = 861
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K+G++H N I T+TGRLS+ PNLQN +++ +IR+AF+A G+ L+ ADY Q+E
Sbjct: 584 KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
LR+LAH+AN + M+DAF G D H++TAM ++ +AV+
Sbjct: 644 LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD 683
>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 951
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
Q R D I + E + L+S +I L ++ + GR+H S N T TGRLS+
Sbjct: 638 QSYRSKHDIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTATGRLSSSN 696
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M+DAF +G D
Sbjct: 697 PNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDI 756
Query: 902 HSRTAMNMY 910
H+ TA +Y
Sbjct: 757 HAATAAKIY 765
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)
Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
N A EGTG SEN N +LE+L + ++D +++ +LT++
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
+ + DTE + P+D E++ S +D N + V ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
P FE+ KV N +D +L+NYG++V G DTM + R Y
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
++E YQ I + ++ G R G K P E++
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518
Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
R Y+ D+ TLKL L+K+L E + + E P +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558
Query: 609 LVKMETEGMLVDREYLSE 626
LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576
>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
gi|156861999|gb|EDO55430.1| DNA-directed DNA polymerase [Bacteroides uniformis ATCC 8492]
Length = 958
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
Q R D I + E + L+S +I LP ++ + GR+H S N T TGRLS+
Sbjct: 645 QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 701
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M+DAF +G
Sbjct: 702 SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGH 761
Query: 900 DFHSRTAMNMY 910
D H+ TA +Y
Sbjct: 762 DIHAATAAKIY 772
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)
Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
N A EGTG SEN N +LE+L + ++D +++ +LT++
Sbjct: 342 NFAGEGTG----VSENSNLTRLEMLDI-------DYQLIDTEDKRAEIIQKLLTSE---- 386
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
+ + DTE + P+D E++ S +D N + V ++NEF
Sbjct: 387 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 435
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
P FE+ KV N +D +L+NYG++V G DTM + R Y
Sbjct: 436 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 489
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
++E YQ I + ++ G R G K P E++
Sbjct: 490 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 525
Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
R Y+ D+ TLKL L+K+L E + + E P +
Sbjct: 526 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 565
Query: 609 LVKMETEGMLVDREYLSE 626
LV +E+ G+L+D E L +
Sbjct: 566 LVNIESNGVLLDTEALKQ 583
>gi|357386727|ref|YP_004901451.1| DNA polymerase I [Pelagibacterium halotolerans B2]
gi|351595364|gb|AEQ53701.1| DNA polymerase I [Pelagibacterium halotolerans B2]
Length = 963
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S ++ + RVH S N + TGRLS+ PNLQN P +D KIR AFIA PGN LI AD
Sbjct: 677 SYINERTKRVHTSYNQASVATGRLSSNEPNLQNIPIRTEDGRKIRTAFIAAPGNLLISAD 736
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ ++ DAF+ G D H+ TA M+
Sbjct: 737 YSQIELRVLAHIADIDALKDAFEEGLDIHAMTASEMF 773
>gi|354594732|ref|ZP_09012769.1| DNA polymerase I [Commensalibacter intestini A911]
gi|353671571|gb|EHD13273.1| DNA polymerase I [Commensalibacter intestini A911]
Length = 927
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Query: 770 GAVASNNKIFA-TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
GA +++K+ + D + A ++ + S ++ ++ ++ K GRVH S
Sbjct: 603 GAWGTDSKVLQELSDKGHTIADQVLAWRQLAKLKSTYTDALI----EQINPKTGRVHTSF 658
Query: 829 N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
N + T TGRLS+ PNLQN P ++ KIR AFIA PG+ L+ ADY Q+ELR+LAH+AN
Sbjct: 659 NMVGTVTGRLSSTDPNLQNIPIRSEEGGKIRAAFIAAPGHVLVSADYSQIELRLLAHVAN 718
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
+ ++F G D H+RTA ++
Sbjct: 719 IPQLKNSFIHGEDIHARTASEVF 741
>gi|427384796|ref|ZP_18881301.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
gi|425728057|gb|EKU90916.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
Length = 952
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ D I + E + L+ ++ LPL ++ + GR+H S N
Sbjct: 631 YVTSEEVLESLRNKHDIIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 687
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 688 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 748 IDAFLSGYDIHAATAAKIY 766
>gi|421852648|ref|ZP_16285334.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371479152|dbj|GAB30537.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 933
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 818 SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
+G+N RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA PG LI ADY Q
Sbjct: 653 AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712
Query: 877 LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ELR+LA +AN ++ +AF+ G D H+RTA ++
Sbjct: 713 IELRLLADVANIPALREAFQLGQDIHARTASEVF 746
>gi|421849808|ref|ZP_16282782.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
gi|371459425|dbj|GAB27985.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
Length = 933
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 818 SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
+G+N RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA PG LI ADY Q
Sbjct: 653 AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712
Query: 877 LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ELR+LA +AN ++ +AF+ G D H+RTA ++
Sbjct: 713 IELRLLADVANIPALREAFQLGQDIHARTASEVF 746
>gi|346313979|ref|ZP_08855503.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345907120|gb|EGX76836.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 861
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K+G++H N I T+TGRLS+ PNLQN +++ +IR+AF+A G+ L+ ADY Q+E
Sbjct: 584 KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASAGHVLLSADYSQIE 643
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
LR+LAH+A+ + M+DAF G D H++TAM ++ +AV+
Sbjct: 644 LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD 683
>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
gi|384043126|ref|YP_005481870.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
gi|384051643|ref|YP_005478706.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
gi|384054750|ref|YP_005487844.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
gi|384057985|ref|YP_005490652.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
gi|384060626|ref|YP_005499754.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
gi|384063918|ref|YP_005484560.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
gi|384119927|ref|YP_005502551.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
Length = 933
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 818 SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
+G+N RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA PG LI ADY Q
Sbjct: 653 AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712
Query: 877 LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ELR+LA +AN ++ +AF+ G D H+RTA ++
Sbjct: 713 IELRLLADVANIPALREAFQLGQDIHARTASEVF 746
>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
Length = 950
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A L E + L S + LPL ++ K GRVH
Sbjct: 626 KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 681 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + ML AF G D H TA ++
Sbjct: 741 ANDEGMLKAFAEGKDIHRSTASEIF 765
>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
Length = 888
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 13/157 (8%)
Query: 759 DSGCTEETEYKGAVASNNKIFATEQEARE----ACDAISALCEVCSIDSLISNFILPLQG 814
D G + G AS T Q+A E A + + E ++ L S ++ P+
Sbjct: 554 DLGLKAHGKTPGGAAS------TSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPA 607
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
++ ++ R+H +LN + T TGRLS+ PNLQN P + ++R F A PGN L+ AD
Sbjct: 608 --LADRDSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRACFTAGPGNRLVAAD 665
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAHL+ ++LDAF G D H+RTA ++
Sbjct: 666 YSQIELRVLAHLSGESALLDAFAHGADIHARTAAILF 702
>gi|423304347|ref|ZP_17282346.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
gi|423310539|ref|ZP_17288523.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
gi|392681710|gb|EIY75067.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
gi|392684933|gb|EIY78253.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
Length = 951
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
Q R D I + E + L+S +I LP ++ + GR+H S N T TGRLS+
Sbjct: 638 QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 694
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M++AF +G
Sbjct: 695 SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGH 754
Query: 900 DFHSRTAMNMY 910
D H+ TA +Y
Sbjct: 755 DIHAATAAKIY 765
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 124/318 (38%), Gaps = 77/318 (24%)
Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
N A EGTG SEN N +LE+L + ++D +++ +LT +
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTIE---- 379
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
+ + DTE + P+D E++ S +D N + V ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
P FE+ KV N +D +L+NYG++V G DTM + R Y
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
++E YQ I + ++ G R G K P E++
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518
Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
R Y+ D+ TLKL L+K+L E + + E P +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558
Query: 609 LVKMETEGMLVDREYLSE 626
LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576
>gi|398797234|ref|ZP_10556557.1| DNA polymerase I [Pantoea sp. GM01]
gi|398103354|gb|EJL93524.1| DNA polymerase I [Pantoea sp. GM01]
Length = 930
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + V+G RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA PGN
Sbjct: 645 LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAGPGNI 701
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 702 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 743
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 153/392 (39%), Gaps = 83/392 (21%)
Query: 300 FKRSNQKNPKNDAAEGT--GQNKKA-SENENSEKLEIL-----RSKLASFYSNVMVVDNV 351
F R K D +GT Q KK+ S+ + S+ E++ + + S V ++D
Sbjct: 279 FSRYEFKRWIADLQDGTWLQQGKKSNSQTQKSQLSEVVAPVTETTSVLSADGYVTILDEA 338
Query: 352 SAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC 411
+ A+ W+ K L A D E +D V I F++ G A G
Sbjct: 339 TFAE---WLKKLKSAEL-FAFDLETDSLDTLSANIVG----IAFAVAPGEAAYLPVGH-- 388
Query: 412 IWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
D LD + D+L + P ED + KV N +D VL+NY ++++G DTM
Sbjct: 389 ---DYLDAPEQLDRNDVLKQLKPLLEDGNAAKVGQNLKYDRGVLKNYDIELNGIKFDTML 445
Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
+ Y L ++ G + D A + K T E GK + F +
Sbjct: 446 ES------------YCLNSVGGKHDM---DSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 490
Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
L++ G Y+A D+ TL+L+ L+M KL+ +
Sbjct: 491 ALEQAG-----------------------HYAAEDADVTLQLH-------LKMWAKLEPE 520
Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS 647
P + ++E P +++ ++E G+L+D+ L A+ QE
Sbjct: 521 AGPKQ----VFEEIEMPLLKVISRIERNGVLIDQNIL------AKHSQELTTRVAELELK 570
Query: 648 KHCPDAKYMNVGSDTQLRQLLF---GGKPNSK 676
H + N+ S QL+ +LF G KP K
Sbjct: 571 AHELAGEPFNLSSPKQLQTILFEKQGIKPTKK 602
>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
Length = 951
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
Q R D I + E + L+S +I LP ++ + GR+H S N T TGRLS+
Sbjct: 638 QSYRSKHDIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAVTATGRLSS 694
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M++AF +G
Sbjct: 695 SNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGH 754
Query: 900 DFHSRTAMNMY 910
D H+ TA +Y
Sbjct: 755 DIHAATAAKIY 765
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 79/319 (24%)
Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
N A EGTG SEN N +LE+L + ++D +++ +LT++
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
+ + DTE + P+D E++ S +D N + V ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
P FE+ KV N +D +L+NYG++V G DTM + R Y
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR-KLKKDGSAGKISTIAPVEEL 547
++E YQ I + + G R K +K+ + ++P E++
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDKLIGARGKNQKN-----MRDLSP-EDV 517
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
R Y+ D+ TLKL L+K+L E + + E P
Sbjct: 518 YR--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVP 557
Query: 608 ILVKMETEGMLVDREYLSE 626
+LV +E+ G+L+D E L +
Sbjct: 558 VLVNIESNGVLLDTEALKQ 576
>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
Length = 929
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ + ++ K GRVH S + +TGRLS+ PNLQN P ++ KIRQ
Sbjct: 631 LSKLRSTYTEALQAA-INKKTGRVHTSYMMAGAQTGRLSSTDPNLQNIPVRTEEGRKIRQ 689
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA GN L+ ADY Q+ELRILAH+A+ ++ AFK G D H+ TA M+
Sbjct: 690 AFIAEEGNVLVSADYSQIELRILAHMADIPALKQAFKDGLDIHAMTASEMF 740
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 71/252 (28%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P EDP++ K+ N +D V + + V DTM ++ ++ G
Sbjct: 401 LKVLKPMLEDPAVLKIGQNIKYDLSVFAQHKIHVHPID-DTMLISFALNAGIHGHG---- 455
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIA 542
D+S E ++G I+ KD+ G K +K S +++
Sbjct: 456 -----------------MDDLS-----ERYLGHKPITFKDVAGTGKAQK--SFAQVALDK 491
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E Y+A D+ TL+L+++LK +L + + Y+
Sbjct: 492 ATE------------YAAEDADVTLRLWQALKPRLRT------------EQVTAVYETLD 527
Query: 603 QPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
+P G +L +ME G+ VDR+ LS + +++A E EA H + N
Sbjct: 528 RPLGPVLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEA-----------HEQAGRSFN 576
Query: 658 VGSDTQLRQLLF 669
+GS QL ++LF
Sbjct: 577 IGSPKQLGEILF 588
>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
Length = 898
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
I + E + L S +I PL + KN R++ S L+ T TGRLS++ PNLQN P
Sbjct: 598 IEPILEYRELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIPVK 657
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ KIRQ FIA GN LI DY Q+ELR+LAH + +++ AFKAG D H TA ++
Sbjct: 658 TEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIF 717
>gi|375335606|ref|ZP_09776950.1| DNA polymerase I [Succinivibrionaceae bacterium WG-1]
Length = 365
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
QE E + + E ++ L++ +I LP + V+ + GR+HC+ N T TGRLS+
Sbjct: 80 QELAEDFEIARLILEYRAVAKLLNTYIEKLP---NIVNSETGRIHCNFNQAGTVTGRLSS 136
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P +D +R FIA G +L+ ADY Q+ELRILAH+AN ++ML F +
Sbjct: 137 SEPNLQNIPIRTEDGRAVRNGFIARDGYTLVAADYSQVELRILAHMANEETMLKRFASKV 196
Query: 900 DFHSRTAMNMY 910
D H+ TA M+
Sbjct: 197 DIHTATAAQMH 207
>gi|374814633|ref|ZP_09718370.1| DNA polymerase I [Treponema primitia ZAS-1]
Length = 975
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 679 SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
S SL + R ++P ++AE + K LR GV+L TE+ + D K
Sbjct: 569 SGSLGLFRDLEMPLLP-ILAEMEGLGIKIEPKVLRDFGVELSTEL------DQIQADTYK 621
Query: 739 TLARNISAEYDCVDGAHDLDDSGCTEETEYKGA---VASNNKIFATEQEAREACDAISA- 794
+ + + L D TE G + + E+ ARE D + A
Sbjct: 622 LVGHEFN-----LASPKQLQDVLFTERKLKPGKKTKTGYSTDVSVLEELARE--DPVPAK 674
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKD 853
+ ++ L S ++ L ++++ K GR+H + + T TGRLS+R PNLQN P +++
Sbjct: 675 ILRHRTLAKLKSTYVDAL--ADIADKEGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEE 732
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AFIA PG LI ADY Q+EL +LAHL+ ++++ AFK G D H+RTA ++
Sbjct: 733 GRRIREAFIAKPGCVLISADYSQIELVVLAHLSQDENLIAAFKGGKDVHARTAALIF 789
>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
gi|158433853|gb|EDP12142.1| DNA-directed DNA polymerase [Eubacterium dolichum DSM 3991]
Length = 861
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K+G++H N I T+TGRLS+ PNLQN +++ IR+AF+A P ++L+ ADY Q+E
Sbjct: 584 KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKVIRKAFVASPQHTLMSADYSQIE 643
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+AN K+M+ AF G D H++TAM ++
Sbjct: 644 LRMLAHMANEKTMIQAFNQGIDIHNQTAMQIF 675
>gi|406990297|gb|EKE09975.1| hypothetical protein ACD_16C00099G0033 [uncultured bacterium]
Length = 899
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 814 GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
++GK GRVH S + T TGRL++ PNLQN P ++ KIR AF+A PG L+
Sbjct: 617 AQQINGKTGRVHTSYAMTATSTGRLASSEPNLQNIPIRTEEGKKIRSAFLAAPGKKLLSV 676
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELR+LAH+AN + AFK G D H+ TA +++
Sbjct: 677 DYSQIELRLLAHMANLPELQKAFKEGKDIHAETASHVF 714
>gi|423223209|ref|ZP_17209678.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
gi|392639310|gb|EIY33135.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
Length = 952
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ + I + E + L+ +I LPL ++ + GR+H S N
Sbjct: 631 YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 687
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 688 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 748 IDAFLSGYDIHAATAAKIY 766
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P +E+ + KV N +D VL+NYG++V G DTM
Sbjct: 425 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTM 467
>gi|429124206|ref|ZP_19184738.1| DNA polymerase I [Brachyspira hampsonii 30446]
gi|426279936|gb|EKV56955.1| DNA polymerase I [Brachyspira hampsonii 30446]
Length = 926
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GR+H S N T TGRLS+ PNLQN P ++ +IR FIA GN LI ADY
Sbjct: 645 INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH +N ++++AFK D H +TAM +Y
Sbjct: 705 QIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIY 739
>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
Length = 861
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
++ + E + L S ++ P+ ++ KNGR+H + N + T TGRLS+ PNLQN P
Sbjct: 559 VADVLEFRMYEKLRSTYLEPM--PQLADKNGRIHTTFNQLATATGRLSSSNPNLQNIPIR 616
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R F+A PGN L+ ADY Q+ELR+LAH++ +++ +AF AG D H+RTA ++
Sbjct: 617 GALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILF 676
>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
Length = 941
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ + I + E + L+ +I LPL ++ + GR+H S N
Sbjct: 620 YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 676
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 677 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 736
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 737 IDAFLSGYDIHAATAAKIY 755
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NEF P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 414 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTMIAHYVLQPELRHNMDY- 472
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++E YQ I + ++ G R G K P
Sbjct: 473 ----------LAEIYLHYQ--------------TIHIDELIGPR-----GKNQKNMRDLP 503
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
EE+ + Y+ D+ TLKL K +LE K G + + E
Sbjct: 504 PEEVYK--------YACEDADVTLKL-----KNVLEEELKKQG-------VEHLFYEIEM 543
Query: 604 PFGEILVKMETEGMLVDREYLSE 626
P +L +E+ G+ +D E L +
Sbjct: 544 PLVRVLANLESNGVRIDTEALKQ 566
>gi|410464497|ref|ZP_11317926.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409982399|gb|EKO38859.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 879
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Query: 759 DSGCTEETEYKGAVASNNKIFATEQEARE----ACDAISALCEVCSIDSLISNFILPLQG 814
D G + G AS T Q+A E A + + E ++ L S ++ P+
Sbjct: 545 DLGLKAHGKTPGGAAS------TSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPA 598
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
++ + R+H +LN + T TGRLS+ PNLQN P + ++R F A PGN L+ AD
Sbjct: 599 --LADADSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRDCFTAGPGNQLVAAD 656
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAHL+ ++LDAF G D H+RTA ++
Sbjct: 657 YSQIELRVLAHLSGEPALLDAFAHGADIHARTAAILF 693
>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
Length = 926
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GR+H S N T TGRLS+ PNLQN P ++ +IR FIA GN LI ADY
Sbjct: 645 INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH +N ++++AFK D H +TAM +Y
Sbjct: 705 QIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIY 739
>gi|374334321|ref|YP_005091008.1| DNA polymerase I [Oceanimonas sp. GK1]
gi|372984008|gb|AEY00258.1| DNA polymerase I [Oceanimonas sp. GK1]
Length = 911
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E + L S + LPL V+ +GR+H S + NT TGRLS+ PNLQN P
Sbjct: 609 LMEYRGLSKLKSTYTDKLPLM---VNEHSGRIHTSYHQANTATGRLSSSDPNLQNIPIRT 665
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQAF+A PG L+ ADY Q+ELRI+AHL+ + +LDAF G D H TA ++
Sbjct: 666 PEGRRIRQAFVAEPGYKLVAADYSQIELRIMAHLSQDQGLLDAFAHGQDIHKATAAEVF 724
>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
Length = 950
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 770 GAVASNNKIF---ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHC 826
GA A+ + T ++ ++A D + + + I L S + LQ ++V+ GRVH
Sbjct: 620 GAYATGADVLEDITTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQ-THVNPDTGRVHT 678
Query: 827 SLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S +I TGRL++ PNLQN P + +IR+AF+A PG+ ++ DY Q+ELRILAH+
Sbjct: 679 SYSIAGANTGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHV 738
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN M AF G D H+ TA M+
Sbjct: 739 ANLPEMKAAFARGIDIHAMTASEMF 763
>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
Length = 953
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ I + E + L+S +I LP ++ + GR+H S N
Sbjct: 632 YVTSEEVLESLRGKHAVIGKILEYRGLKKLLSTYIDALP---QLINSRTGRIHTSFNQAV 688
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 689 TSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 748
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 749 IDAFLSGHDIHAATAAKIY 767
>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
Length = 861
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K+G++H N I T+TGRLS+ PNLQN +++ +IR+AF+A G+ L+ ADY Q+E
Sbjct: 584 KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+A+ + M+DAF G D H++TAM ++
Sbjct: 644 LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIF 675
>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
Length = 929
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 810 LPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ KNGR+H S L T TGRLS+R PNLQN P ++ +IR AF AVPG
Sbjct: 646 LPL----LADKNGRIHTSFLQTGTATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTV 701
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+EL +LAHL+ K++ AF G D H TA +Y
Sbjct: 702 LISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIY 743
>gi|381202279|ref|ZP_09909394.1| DNA polymerase I [Sphingobium yanoikuyae XLDN2-5]
Length = 932
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 793 SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
SA+C + + L S + LQ ++ GRVH S ++ +TGRLS+ PNLQN
Sbjct: 624 SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 682
Query: 848 PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
P + +IR AF+A PGN ++ ADY Q+ELR+ AH+A+ ++ DAF+ G D H+RTAM
Sbjct: 683 PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 742
Query: 908 NMY 910
++
Sbjct: 743 ELF 745
>gi|398386226|ref|ZP_10544229.1| DNA polymerase I [Sphingobium sp. AP49]
gi|397718594|gb|EJK79180.1| DNA polymerase I [Sphingobium sp. AP49]
Length = 930
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 793 SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
SA+C + + L S + LQ ++ GRVH S ++ +TGRLS+ PNLQN
Sbjct: 622 SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 680
Query: 848 PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
P + +IR AF+A PGN ++ ADY Q+ELR+ AH+A+ ++ DAF+ G D H+RTAM
Sbjct: 681 PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 740
Query: 908 NMY 910
++
Sbjct: 741 ELF 743
>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
Length = 903
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E ++ L S + LPLQ V+ GRVH S + T TGRLS+ PNLQN P
Sbjct: 602 LLEYRTLSKLKSTYTDRLPLQ---VNSHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRS 658
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQAFIA PG L+ ADY Q+ELRI+AHL+ + +L AF+A D H RTA ++
Sbjct: 659 TEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEIF 717
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 65/276 (23%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P EDP KV N FD +VL NYG+++ G D+M + + DS+
Sbjct: 376 VLARLKPLLEDPRHGKVGQNLKFDCNVLANYGIELQGIRHDSMLESYVLDST-------- 427
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++ N D +++K R + + AGK + P
Sbjct: 428 ---------------------ATRHNMD-----SLALK-YLQRTTITYEMVAGKGAKQLP 460
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
++ E+ Y+A D+ +L+L+ +L + + + YQE
Sbjct: 461 FNQVTIEKAA---PYAAEDADISLQLHHCFWPRLQQ-----------EEGLRQLYQELEI 506
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+ V+ E L K E A + R + A + ++ N+ S Q
Sbjct: 507 PLIPVLSRMERNGVQVNTEQL----KAQSDELAARLKRLEQEAFELAGES--FNLASPKQ 560
Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
++ +L+ + LP+ R K P + AE
Sbjct: 561 IQAILY--------EKLKLPVTR--KTPTGQPSTAE 586
>gi|427408412|ref|ZP_18898614.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
gi|425712722|gb|EKU75736.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
Length = 932
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 793 SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
SA+C + + L S + LQ ++ GRVH S ++ +TGRLS+ PNLQN
Sbjct: 624 SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 682
Query: 848 PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
P + +IR AF+A PGN ++ ADY Q+ELR+ AH+A+ ++ DAF+ G D H+RTAM
Sbjct: 683 PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 742
Query: 908 NMY 910
++
Sbjct: 743 ELF 745
>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
Length = 901
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 800 SIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYK 856
S+ L S +I LP S ++ + GR+H S N TGRLS+ PNLQN P + +
Sbjct: 604 SMAKLKSTYIDALP---SLINIRTGRIHTSYNQTVAATGRLSSSNPNLQNIPIRTLEGKR 660
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN---MYPHI 913
IRQAFIA PG +++ ADY Q+ELR+LAHL+ +++AF AG D HSRTA + ++P +
Sbjct: 661 IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEM 720
Query: 914 RNA 916
NA
Sbjct: 721 INA 723
>gi|342216871|ref|ZP_08709518.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341587761|gb|EGS31161.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 437
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIR 858
S+ L S ++ L +++ G++GR+H + NT TGR+S+ PNLQN P K+ IR
Sbjct: 142 SLTKLKSTYLESL--ADLIGEDGRIHSTFKQTNTATGRISSNDPNLQNIPVRTKEGRLIR 199
Query: 859 QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AF+A G+ + ADY Q+ELRILAH++ MLDAF+ G D H RTA ++
Sbjct: 200 KAFVAPEGSCFVDADYSQIELRILAHISKDDHMLDAFRQGQDIHRRTAAQVF 251
>gi|365859597|ref|ZP_09399453.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
gi|363712070|gb|EHL95774.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
Length = 963
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ + ++GRVH ++ T TGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ AD
Sbjct: 681 AQIDARDGRVHTDFSMAITSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVARPGHVLLAAD 740
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAHLA+ S+ AF D HSRTA +++
Sbjct: 741 YSQIELRLLAHLADVPSLRSAFAQDEDIHSRTAADIF 777
>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
Length = 955
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 779 FATEQEAREACDAISA-----LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INT 832
++T+Q E DA A + E + L S + LQ + ++ K RVH S + +
Sbjct: 627 YSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQA-INPKTNRVHTSYSLVGA 685
Query: 833 ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSML 892
+TGRLS+ PNLQN P + +IRQAF+A GN L+ ADY Q+ELR+ AH+A+ +
Sbjct: 686 QTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRLAAHMADVAPLR 745
Query: 893 DAFKAGGDFHSRTAMNMY 910
+AF AG D H+RTA M+
Sbjct: 746 EAFAAGEDIHARTAQEMF 763
>gi|423711912|ref|ZP_17686217.1| DNA polymerase I [Bartonella washoensis Sb944nv]
gi|395412760|gb|EJF79240.1| DNA polymerase I [Bartonella washoensis Sb944nv]
Length = 968
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIRQAFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+AN ++ +AF G D H+ TA M+
Sbjct: 732 PEGHVLLSADYSQIELRILAHIANIDALKEAFAQGQDIHAITASQMF 778
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 57/246 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P ++ ++ K+ N +D V++ G+ + F DTM ++ D+
Sbjct: 439 LKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG--------- 488
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
ALT + +SE Y+ I+ KD+ K KIS+ A V
Sbjct: 489 -ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK--------KISSFAQV 525
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+ Q Y+A D+ TL+L++ LK +L+ K M Y+ +P
Sbjct: 526 DLKQAT------FYAAEDADITLRLWQVLKPQLV------------AKGMTKIYERLDRP 567
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
E+L +ME G+L+DR+ L R E A F + + N+ S QL
Sbjct: 568 LIEVLARMEERGILIDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNIASPKQL 621
Query: 665 RQLLFG 670
+LFG
Sbjct: 622 GNILFG 627
>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
Length = 956
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 814 GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
G ++ + GRVH S N + +TGRLS+ PNLQN P ++ KIR AF+A GN LI A
Sbjct: 670 GECINAETGRVHTSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAA 729
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELR+LAH+ N ++ DAF D H+ TA M+
Sbjct: 730 DYSQIELRLLAHIGNIDTLKDAFNNDLDIHAMTASEMF 767
>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
Length = 950
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A+E L E + L S + LP ++ K GRVH
Sbjct: 626 KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 681 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHL 740
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
A+ + ML AF G D H TA ++
Sbjct: 741 AHDEGMLKAFTEGKDIHRSTAAEIF 765
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 149/391 (38%), Gaps = 100/391 (25%)
Query: 319 NKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAK 378
+ + E+ K+EI RSK Y V + ++ W+ + + LV A DTE
Sbjct: 313 TQAVEKTESFAKVEIDRSK----YETVTIETQLTK-----WIKKIQKEKLV-AVDTETNA 362
Query: 379 IDVKQETPVDHGEVICFSIYSGP----------EADFGNGKSCIWVDLLDGGGRDL---- 424
+DV V I F + SG E G+ ++V+ G +L
Sbjct: 363 LDVMSAELVG----ISFGLASGEACYIPLTHKEEVSEQAGQGDLFVESTATLGYELVKNQ 418
Query: 425 ------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT 478
L + P ED IKK+ N +D V N+G++V G DTM + +S+ R
Sbjct: 419 LDLTACLAQLKPILEDEQIKKIGQNIKYDLTVFANHGIEVQGVAFDTMLESYTQNSTGRH 478
Query: 479 EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
E G + + E+ GK G+ +L D A +
Sbjct: 479 NMDDLAERYLGHKTIAFEE----------------IAGK-------GKNQLTFDKIALDV 515
Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
++ Y+A D+ T+KL+++L +L+ P ++ +
Sbjct: 516 AS----------------EYAAEDADVTMKLHQTLFP-------ELEKTP----TLLKLF 548
Query: 599 QEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
+ P +L +E G+L+D + L EIE+ AE EA V H +
Sbjct: 549 NDIEMPLVRVLSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAEV---------HQAAGQ 598
Query: 655 YMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
N+ S QL+++LF G P K + P
Sbjct: 599 EFNLASTKQLQEILFEKLGLPVKKKTPKGAP 629
>gi|347732571|ref|ZP_08865648.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
gi|347518684|gb|EGY25852.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
Length = 872
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
+ A+ E ++ L S ++ PL + GR+H + N + T TGRLS+ PNLQN P
Sbjct: 565 VDAILEFRKLEKLRSTYLEPL--PRLVDDAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R F A PG L+ ADY Q+ELR+LAH++ ++L AF+ G D HSRTA +Y
Sbjct: 623 GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682
Query: 911 PHIRNAVETGQ 921
++ V T Q
Sbjct: 683 DVAQDQVSTDQ 693
>gi|119946792|ref|YP_944472.1| multifunctional 5'-3' exonuclease/3'-5' polymerase/3'-5'
exonuclease [Psychromonas ingrahamii 37]
gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
3'->5' exonuclease [Psychromonas ingrahamii 37]
Length = 938
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ K GR+H S T TGRLS+ PNLQN P + +IRQAFIA PG ++ ADY
Sbjct: 657 VNEKTGRLHTSYQQAVTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 717 QIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQ 762
>gi|409400480|ref|ZP_11250543.1| DNA polymerase I [Acidocella sp. MX-AZ02]
gi|409130543|gb|EKN00301.1| DNA polymerase I [Acidocella sp. MX-AZ02]
Length = 901
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K GRVH + + T TGRLS+ PNLQN P ++ +IR+AFIA PG+SLI ADY Q+E
Sbjct: 624 KTGRVHTNFQMAATTTGRLSSTDPNLQNIPIRTEEGARIRKAFIAAPGHSLISADYSQIE 683
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+A+ ++ +F+ G D H+RTA ++
Sbjct: 684 LRLLAHVADIPALKQSFETGEDIHARTASEVF 715
>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 872
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
+ A+ E ++ L S ++ PL + GR+H + N + T TGRLS+ PNLQN P
Sbjct: 565 VDAILEFRKLEKLRSTYLEPL--PRLVDGAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R F A PG L+ ADY Q+ELR+LAH++ ++L AF+ G D HSRTA +Y
Sbjct: 623 GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682
Query: 911 PHIRNAVETGQ 921
++ V T Q
Sbjct: 683 DVAQDQVSTDQ 693
>gi|333997453|ref|YP_004530065.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
gi|333740823|gb|AEF86313.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
Length = 1003
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ + GR+H + + T TGRLS+R PNLQN P +++ +IR+AFIA PGN LI ADY
Sbjct: 722 DLADREGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEEGRRIREAFIAKPGNVLISADY 781
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL +LAHL+ +++L AF G D H+RTA ++
Sbjct: 782 SQIELVVLAHLSQDENLLAAFNEGKDVHARTAALIF 817
>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
Length = 952
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
+ T +E E+ + I + E + L+S +I L ++ + GR+H S N T
Sbjct: 631 YVTSEEVLESLRSKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 690 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 750 AFLSGYDIHAATAAKIY 766
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 50/203 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NE P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 424 IVNELRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY- 482
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++E YQ I + ++ G R G K P
Sbjct: 483 ----------LAEIYLQYQ--------------TIHIDELIGAR-----GKNQKNMRDLP 513
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E++ R Y+ D+ TLKL L+K+L E S + + E
Sbjct: 514 AEDVYR--------YACEDADVTLKLKNVLEKELKEQSAE------------HLFYEIEM 553
Query: 604 PFGEILVKMETEGMLVDREYLSE 626
P +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALRQ 576
>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 915
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 6/131 (4%)
Query: 790 DAISALCEVCSIDSLISNF--ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
+ + + E ++ L S + ILP + VS ++GR+H S N T TGRLS+ PNLQN
Sbjct: 609 EIVRLILEYRTLAKLKSTYVDILP---AMVSARDGRLHTSFNQARTATGRLSSSDPNLQN 665
Query: 847 QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
P + +IRQAF+A PG+ L+ ADY Q++LR LAHL+ +++ AF A D H+ TA
Sbjct: 666 IPVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTATA 725
Query: 907 MNMYPHIRNAV 917
M++Y R+ +
Sbjct: 726 MSLYGLPRDEI 736
>gi|435853194|ref|YP_007314513.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
gi|433669605|gb|AGB40420.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
Length = 856
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
+ I + E S+ L S ++ PL+ S ++ K GR+H + T TGRLS+R PNLQN P
Sbjct: 552 EIIPLISEYRSLTKLKSTYVDPLE-SYINEKTGRIHTNFKQQVTATGRLSSREPNLQNIP 610
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
++ KIRQ F+A G L+ ADY Q+ELR+LAH++ + + A++ G D H++TA
Sbjct: 611 IRTEEGRKIRQVFVAQEGYKLVAADYSQVELRVLAHISQDERLKKAYQQGLDIHTQTAKE 670
Query: 909 MY 910
++
Sbjct: 671 LF 672
>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
Length = 933
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+V+ + GRVH S + T TGRLS+ PNLQN P ++ +IR+AFIA PG+ LI ADY
Sbjct: 652 DVNPRTGRVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADY 711
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + D+F G D H+RTA ++
Sbjct: 712 SQIELRLLAHVADIPQLKDSFANGEDIHARTASEVF 747
>gi|386394626|ref|ZP_10079407.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Desulfovibrio sp. U5L]
gi|385735504|gb|EIG55702.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Desulfovibrio sp. U5L]
Length = 893
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T QEA E + + E ++ L S ++ PL ++ GR+H + N + T T
Sbjct: 574 STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 631
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P ++R+ F+A PG L+ ADY Q+ELR+LAHL+ ++L A
Sbjct: 632 GRLSSSNPNLQNIPIRGTLGRRMRECFVAAPGKKLVAADYSQIELRVLAHLSGEPALLAA 691
Query: 895 FKAGGDFHSRTAMNMY 910
F+ G D H+RTA ++
Sbjct: 692 FEQGADIHARTAAILF 707
>gi|434382151|ref|YP_006703934.1| DNA polymerase I [Brachyspira pilosicoli WesB]
gi|404430800|emb|CCG56846.1| DNA polymerase I [Brachyspira pilosicoli WesB]
Length = 925
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 803 SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
S + N L + + V K R+H S N T TGRLS+ PNLQN PA + IR F
Sbjct: 630 SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 689
Query: 862 IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY--------PHI 913
IA GN LI ADY Q+ELR+LAH +N +++AFK D H +TAM +Y P +
Sbjct: 690 IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVTPSM 749
Query: 914 RNA 916
RN
Sbjct: 750 RNT 752
>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 952
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GRVH S N T TGRLS+ PNLQN P ++ +IRQAF+A G ++ ADY
Sbjct: 673 INKKTGRVHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYS 732
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
Q+ELRI+AHL+N + M++AF G D H TA ++ VE G+V
Sbjct: 733 QIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIF-----GVELGEV 774
>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452743761|ref|ZP_21943621.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452088205|gb|EME04568.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
Length = 952
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GRVH S N T TGRLS+ PNLQN P ++ +IRQAF+A G ++ ADY
Sbjct: 673 INKKTGRVHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYS 732
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
Q+ELRI+AHL+N + M++AF G D H TA ++ VE G+V
Sbjct: 733 QIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIF-----GVELGEV 774
>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
gi|442555361|ref|YP_007365186.1| DNA polymerase I [Lawsonia intracellularis N343]
gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
intracellularis PHE/MN1-00]
gi|441492808|gb|AGC49502.1| DNA polymerase I [Lawsonia intracellularis N343]
Length = 868
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T QE E I + E ++ L S ++ PL + GK+GRVH + N + T T
Sbjct: 545 STSQEVLEKLSGQHPIIDTILEYRKLEKLRSTYLEPL--PRLIGKDGRVHTTFNQLATAT 602
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P ++R F A GN LI ADY Q+ELR+LAH + ++L A
Sbjct: 603 GRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTA 662
Query: 895 FKAGGDFHSRTAMNMY 910
F G D H+RTA +Y
Sbjct: 663 FLEGADIHTRTASLLY 678
>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 952
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GRVH S N T TGRLS+ PNLQN P ++ +IRQAF+A G ++ ADY
Sbjct: 673 INKKTGRVHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYS 732
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
Q+ELRI+AHL+N + M++AF G D H TA ++ VE G+V
Sbjct: 733 QIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIF-----GVELGEV 774
>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
43183]
gi|167698145|gb|EDS14724.1| DNA-directed DNA polymerase [Bacteroides stercoris ATCC 43183]
Length = 952
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
+ T +E E+ I + E + L+S +I L ++ + GR+H S N T
Sbjct: 631 YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 690 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 750 AFLSGYDIHAATAAKIY 766
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 84/362 (23%)
Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLV 369
N A GTG K + + ++L F + ++D KK++ L K +
Sbjct: 335 NFADNGTGDAKNS-----------ILTRLEMFDVDYQLIDTEEKRKKIIQKLLTKE---I 380
Query: 370 HACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
+ DTE + P++ E++ S +D N + V ++NEF
Sbjct: 381 LSIDTETTGTE-----PME-AELVGMSF-----SDAENQAYYVPVPANRDEALKIVNEFR 429
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------- 482
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
++E YQ I + ++ G + G K P E++ R
Sbjct: 483 ----LAEIYLHYQ--------------TIHIDELIGAK-----GKNQKNMRDLPPEDVYR 519
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
Y+ D+ TLKL L+K+L E + + + E P +L
Sbjct: 520 --------YACEDADVTLKLKNVLEKELKEHAAE------------HLFYEIEMPLVPVL 559
Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK--HCPDAKYMNVGSDTQLRQL 667
V +E+ G+ +D E L + E R ++ + + N+GS Q+ ++
Sbjct: 560 VNIESNGVRIDTEALKQ-------SSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEV 612
Query: 668 LF 669
LF
Sbjct: 613 LF 614
>gi|404475889|ref|YP_006707320.1| DNA polymerase I [Brachyspira pilosicoli B2904]
gi|404437378|gb|AFR70572.1| DNA polymerase I [Brachyspira pilosicoli B2904]
Length = 925
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 803 SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
S + N L + + V K R+H S N T TGRLS+ PNLQN PA + IR F
Sbjct: 630 SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 689
Query: 862 IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY--------PHI 913
IA GN LI ADY Q+ELR+LAH +N +++AFK D H +TAM +Y P +
Sbjct: 690 IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVTPSM 749
Query: 914 RNA 916
RN
Sbjct: 750 RNT 752
>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
Length = 932
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL S VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMISPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 921
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
+ ++ E ++ + S ++ PL + NGR+H + N T TGRLS+ PNLQN P
Sbjct: 614 VDSVLEFRKLEKMRSTYLDPL--PRLMDGNGRIHTTFNQKATATGRLSSSNPNLQNIPVR 671
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R FIA PG++L+ ADY Q+ELR+LAH++ K++L+AF+ G D H+RTA +Y
Sbjct: 672 GDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHARTAALVY 731
>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
Length = 931
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 803 SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
S + N L + + V K R+H S N T TGRLS+ PNLQN PA + IR F
Sbjct: 636 SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 695
Query: 862 IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY--------PHI 913
IA GN LI ADY Q+ELR+LAH +N +++AFK D H +TAM +Y P +
Sbjct: 696 IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVTPSM 755
Query: 914 RNA 916
RN
Sbjct: 756 RNT 758
>gi|406948805|gb|EKD79442.1| hypothetical protein ACD_41C00072G0009, partial [uncultured
bacterium]
Length = 813
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 789 CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
D IS EV + S + LP V+ K R+H + N TGRLS+ PNLQN
Sbjct: 598 IDLISDYREVTKLKSTYVD-ALP---QMVNPKTKRIHTNYNQTIAATGRLSSVDPNLQNI 653
Query: 848 PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
P + KIR+AFIA PG L+ DY Q+ELRI+AHLAN K+ +D FK G D H++TA
Sbjct: 654 PVRTELGRKIRKAFIAPPGKVLVSLDYSQVELRIIAHLANDKTFIDGFKRGADIHTQTAA 713
Query: 908 NMYPHIRNAVETGQV 922
M N V QV
Sbjct: 714 EM-----NGVAEDQV 723
>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
Length = 920
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GR+H S N T TGRLS+ PNLQN P ++ +IR FI GN LI ADY
Sbjct: 639 INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYS 698
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH +N ++++AFK D H +TAM +Y
Sbjct: 699 QIELRLLAHFSNDPTLVEAFKNNDDIHRKTAMKIY 733
>gi|374287093|ref|YP_005034178.1| DNA polymerase I [Bacteriovorax marinus SJ]
gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
Length = 883
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+G++H N N TGRLS+ PNLQN P + ++R+ FIA PG L+ ADY Q+EL
Sbjct: 607 SGKIHTHFNQNVAATGRLSSNHPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVEL 666
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
R+LAH +N K+M+DAFK G D H RTA
Sbjct: 667 RLLAHFSNDKTMIDAFKKGVDIHRRTA 693
>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
Length = 922
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LPL V+ K GRVH S + N TGRLS+ PNLQN P
Sbjct: 620 ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 677 EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736
Query: 912 HIRNAVETGQ 921
+AV T Q
Sbjct: 737 TDFDAVTTEQ 746
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ K L+ A DTE +D V + F++ +G A +
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383
Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
G + L +FA P ED +KKV N +D VL N G+K+ G DTM + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443
Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
S SR G +L+ L G+ + GF +DI G+ +
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
+ + AP Y+A D+ TL+L++ L W +L+ +P
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
+ + E P ++L +E +G+L+D L + I+ + E A +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571
Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
N+GS QL+ L F G P +K + P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600
>gi|451940050|ref|YP_007460688.1| DNA polymerase I [Bartonella australis Aust/NH1]
gi|451899437|gb|AGF73900.1| DNA polymerase I [Bartonella australis Aust/NH1]
Length = 969
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP + GRVH S ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 681 LPHYILP--------RTGRVHTSYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 732
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+SL+ ADY Q+ELR+LAH+A+ ++ +AF G D H+ TA M+
Sbjct: 733 PRGHSLLSADYSQIELRVLAHIADITALKEAFAQGKDIHTITASQMF 779
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 74/310 (23%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
A DTE +D Q E++ FS+ P +A + + D L G GR
Sbjct: 383 AFDTETTSLDPMQ------AELVGFSLALRPNKAAYIPLEHVEGRDDLLGDGRIAAQIET 436
Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
L P E+ ++ K+ N +D +++ +G+ + F DTM ++ + D+ T G
Sbjct: 437 QKALALLKPILENQAVLKIGQNIKYDWLMMKQHGIVMRPFD-DTMLLSYVLDAGTLTHG- 494
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
V+S+ G+T IS KD+ K KI++
Sbjct: 495 ---------MDVLSQH--------WLGHT------PISYKDLTHNGK--------KITSF 523
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
A V+ Q Y+A D+ TL+L++ LK +L+ + + Y+
Sbjct: 524 AQVDLKQAT------LYAAEDADVTLRLWEVLKPQLV------------AQGLTKIYERL 565
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
+P E+L KME G+LVDR+ LS + ++ARA ++ K NV S
Sbjct: 566 DRPLIEVLAKMEERGVLVDRQILSRLSGELARAASVLEEEIYQLVGEK-------FNVAS 618
Query: 661 DTQLRQLLFG 670
QL ++FG
Sbjct: 619 PKQLGDIIFG 628
>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
gi|225204183|gb|EEG86537.1| DNA-directed DNA polymerase [Proteus penneri ATCC 35198]
Length = 949
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + + E + L S + LPL V+ K RVH
Sbjct: 624 KGAPSTNEEVL---EELAHSHELPRLILEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 678 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHL 737
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ K +LDAF G D H TA ++
Sbjct: 738 SQDKGLLDAFAQGKDIHRATASEVF 762
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 65/252 (25%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D+L P ED +I K+ N FD ++EN G++++G H DTM + + +S
Sbjct: 420 DVLAALKPILEDKNILKIGQNLKFDRGIMENEGIELNGIHFDTMLESYVLNS-------- 471
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+R M D A + K T E GK G+ +L
Sbjct: 472 -----VSNRHDM--DTLAEKHLNHKTTTFEEIAGK-------GKGQLT------------ 505
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
+++ E+ L Y+A D+ TL L+++L ++ + P K + Y++
Sbjct: 506 -FNQIEVEQATL---YAAEDADITLLLHQALYPQIEAIE--------PLKHV---YRDIE 550
Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
P +L +ME +G+L+D + L+ EI +++A E+E + N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKET-----------FALAGQEFN 599
Query: 658 VGSDTQLRQLLF 669
+ S QL+++LF
Sbjct: 600 LSSPKQLQEILF 611
>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
Length = 920
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GR+H S N T TGRLS+ PNLQN P ++ +IR FI GN LI ADY
Sbjct: 639 INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYS 698
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH +N ++++AFK D H +TAM +Y
Sbjct: 699 QIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIY 733
>gi|425069608|ref|ZP_18472723.1| DNA polymerase I [Proteus mirabilis WGLW6]
gi|404597034|gb|EKA97541.1| DNA polymerase I [Proteus mirabilis WGLW6]
Length = 949
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ + E I E + L S + LPL V+ K RVH
Sbjct: 624 KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 678 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHL 737
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ K +LDAF G D H TA ++
Sbjct: 738 SQDKGLLDAFAQGKDIHRATASEVF 762
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 65/252 (25%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L P ED +I K+ N FD ++EN G++++G + DTM + + +S +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
++ L K ++ +++ KG G+++ I
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E E Y+A D+ TL L+++L ++ ++ P K + Y +
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550
Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
P +L +ME +G+L+D + L+ EI +++A E+E + N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET-----------FALAGQEFN 599
Query: 658 VGSDTQLRQLLF 669
+ S QL+++LF
Sbjct: 600 LSSPKQLQEILF 611
>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
Length = 932
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ + E I E + L S + LPL V+ K RVH
Sbjct: 607 KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ K +LDAF G D H TA ++
Sbjct: 721 SQDKGLLDAFAQGKDIHRATASEVF 745
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 65/252 (25%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L P ED +I K+ N FD ++EN G++++G + DTM + + +S +
Sbjct: 403 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 459
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
++ L K ++ +++ KG G+++ I
Sbjct: 460 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 492
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E E Y+A D+ TL L+++L ++ ++ P K + Y +
Sbjct: 493 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 533
Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
P +L +ME +G+L+D + L+ EI +++A E+E + N
Sbjct: 534 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET-----------FALAGQEFN 582
Query: 658 VGSDTQLRQLLF 669
+ S QL+++LF
Sbjct: 583 LSSPKQLQEILF 594
>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
Length = 922
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LPL V+ K GRVH S + N TGRLS+ PNLQN P
Sbjct: 620 ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 677 EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736
Query: 912 HIRNAVETGQ 921
+AV T Q
Sbjct: 737 TDFDAVTTEQ 746
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ K L+ A DTE +D V + F++ +G A +
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383
Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
G + L +FA P ED +KKV N +D VL N G+K+ G DTM + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443
Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
S SR G +++ L G+ + GF +DI G+ +
Sbjct: 444 SVASRHDMDGLAIKYL--------------------GHKNIGF------EDIAGKGAKQL 477
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
+ + AP Y+A D+ TL+L++ L W +L+ +P
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
+ + E P ++L +E +G+L+D L + I+ + E A +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571
Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
N+GS QL+ L F G P +K + P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600
>gi|359786182|ref|ZP_09289321.1| DNA polymerase I [Halomonas sp. GFAJ-1]
gi|359296551|gb|EHK60800.1| DNA polymerase I [Halomonas sp. GFAJ-1]
Length = 926
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ KIRQAFIA PG ++ ADY Q+EL
Sbjct: 650 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 709
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +LDAF G D H+ TA ++
Sbjct: 710 RIMAHLSEDKGLLDAFADGRDIHTATAAEVF 740
>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
Length = 922
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LPL V+ K GRVH S + N TGRLS+ PNLQN P
Sbjct: 620 ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 677 EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736
Query: 912 HIRNAVETGQ 921
+AV T Q
Sbjct: 737 TDFDAVTTEQ 746
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ K L+ A DTE +D V + F++ +G A +
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383
Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
G + L +FA P ED +KKV N +D VL N G+K+ G DTM + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443
Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
S SR G +L+ L G+ + GF +DI G+ +
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
+ + AP Y+A D+ TL+L++ L W +L+ +P
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
+ + E P ++L +E +G+L+D L + I+ + E A +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571
Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
N+GS QL+ L F G P +K + P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600
>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
Length = 917
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ ++GR+H S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 632 LPLM---VNAQSGRIHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKK 688
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 689 VLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVF 730
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 104/402 (25%)
Query: 278 RNSEIECFEDGSSYTPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSK 337
R+ I+CF + + FKR + N G+G+++K ++ E +++
Sbjct: 272 RDELIKCFAE----------MEFKRWLAEVLDNKT--GSGKDEKTTDEE------VIKQD 313
Query: 338 LASFYSNVMVVDNVSAAKKVVWM--LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
+ + Y+ + + + +W+ LTN L+ A DTE ++ + V I F
Sbjct: 314 IKTEYTTIYTHEELD-----LWIDKLTNA--DLI-AIDTETTSLNYMEAKLVG----ISF 361
Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
+I +G A G D LD + + L + P E+P +KKV N +D +
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPKQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
N G+K+ G DTM + +++S +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSV-----------------------------ATKHNMD 447
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWIS--YSAFDSINTLKL 569
+ +++K G + + + AGK V++L + +L I+ Y+A D+ TL+L
Sbjct: 448 D-----LALK-YLGHKNISFEEIAGK-----GVKQLTFNQIDLEIAAPYAAEDADITLRL 496
Query: 570 YKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL-SEI 627
++ L W +L+ +P + + + P +IL +E G+L+D L +
Sbjct: 497 HQHL--------WPRLEKEP----QLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQS 544
Query: 628 EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
E++AR E F K N+ S QL+ L F
Sbjct: 545 EELARTIDELEQKAFEIAGEK-------FNLSSPKQLQALFF 579
>gi|406957385|gb|EKD85320.1| hypothetical protein ACD_38C00044G0001, partial [uncultured
bacterium]
Length = 434
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 781 TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSA 839
T +E A AIS L + + L+S +I L ++GR+H + N+ TGR+S+
Sbjct: 103 TLRELSSAHPAISLLLQYRQLFKLVSTYIDAL--PKAVAEDGRIHSTFNVEGAATGRISS 160
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
+ PNLQN P + +IR+AFIA G L+ ADY Q+ELRI+AHLA+ + +AFK G
Sbjct: 161 KDPNLQNIPVKGEAGSEIRKAFIAPKGKILLAADYSQIELRIMAHLADDPGLKEAFKKGV 220
Query: 900 DFHSRTAMNMY 910
D H+ TA ++
Sbjct: 221 DIHTATASKVF 231
>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
gi|217986035|gb|EEC52374.1| DNA-directed DNA polymerase [Bacteroides eggerthii DSM 20697]
Length = 952
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
+ T +E E+ I + E + L+S +I L ++ + GR+H S N T
Sbjct: 631 YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ ++M+D
Sbjct: 690 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749
Query: 894 AFKAGGDFHSRTAMNMY 910
AF +G D H+ TA +Y
Sbjct: 750 AFLSGYDIHAATAAKIY 766
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NEF P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
E R + ++ S+G + SM+D+ P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E++ R Y+ D+ TLKL L+K+L + S + + E
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553
Query: 604 PFGEILVKMETEGMLVDREYLSE 626
P +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576
>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
Length = 952
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ I + E + L+S +I LP ++ + GR+H S N
Sbjct: 631 YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP---QLINPRTGRIHTSFNQAV 687
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ ++M
Sbjct: 688 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNM 747
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 748 IDAFLSGYDIHAATAAKIY 766
Score = 46.6 bits (109), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NEF P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
E R + ++ S+G + SM+D+ P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E++ R Y+ D+ TLKL L+K+L + S + + E
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553
Query: 604 PFGEILVKMETEGMLVDREYLSE 626
P +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576
>gi|398796189|ref|ZP_10555817.1| DNA polymerase I [Pantoea sp. YR343]
gi|398204041|gb|EJM90853.1| DNA polymerase I [Pantoea sp. YR343]
Length = 930
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + V+G RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA GN
Sbjct: 645 LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAGSGNR 701
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 702 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 743
>gi|336322733|ref|YP_004602700.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
gi|336106314|gb|AEI14132.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
Length = 793
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 814 GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
G V+ K GRVH + N + T TGRLS+ PNLQN P K K+R AFI G SLI
Sbjct: 510 GDYVNSKTGRVHSTFNQVGTATGRLSSSNPNLQNIPQRGKIASKVRSAFIPEDGYSLISF 569
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELR+LAHL+ +++L+A+K D H +TA +++
Sbjct: 570 DYSQIELRLLAHLSGDETLLEAYKKDADIHKKTAASIF 607
>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
Length = 968
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ K++ +AF G D H+ TA M+
Sbjct: 732 PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF 778
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 88/316 (27%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGG---- 420
A DTE +D Q +++ FS+ P + GK DLL GG
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFEGKE----DLLKGGRIAS 431
Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
R L P ED ++ K+ N +D V++ Y + + F DTM ++ D+
Sbjct: 432 QIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQYDIVIRSFD-DTMLLSYALDAG-- 488
Query: 478 TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGK 537
ALT + +SE ++ I+ KD+ K K
Sbjct: 489 --------ALTHNMDDLSERWLEHKP--------------IAYKDLTHNGK--------K 518
Query: 538 ISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDF 597
I++ A V+ Q Y+A D+ TL+L++ LK +L+ + M
Sbjct: 519 ITSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKI 560
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDA 653
Y+ +P E+L +ME G+LVDR+ L E+ + A +E + D
Sbjct: 561 YERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYKQ---------ADE 611
Query: 654 KYMNVGSDTQLRQLLF 669
K+ N+ S QL +LF
Sbjct: 612 KF-NLASPKQLGDILF 626
>gi|408421334|ref|YP_006762748.1| DNA polymerase I PolA [Desulfobacula toluolica Tol2]
gi|405108547|emb|CCK82044.1| PolA: DNA polymerase I [Desulfobacula toluolica Tol2]
Length = 911
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GR+H S N T TGRLS+ PNLQN P +K+ +IR+AFI G++LI ADY
Sbjct: 631 INKETGRIHTSFNQTITVTGRLSSSHPNLQNIPIRKKEGKEIRKAFIPKKGHTLISADYS 690
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH A +++AF G D H+RTA+ ++
Sbjct: 691 QIELRILAHYAEDDILIEAFNEGEDIHTRTALEVF 725
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 56/247 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D+L F P E+P IKKV N +D VL +G+ + G DTM + L + + R G+
Sbjct: 383 DILRIFKPILENPDIKKVGQNIKYDYIVLSRFGITLQGIAFDTMIASYLLNPATR---GH 439
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
SL+ + + + +Y+ KG GF +D+
Sbjct: 440 SLDRIAMN--LFGYKTISYEDVTGKGKNQIGF------QDV------------------- 472
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P+ + ++Y++ D+ T Y+ KK+ + +++ D ++
Sbjct: 473 PIAQ--------AVNYASEDADITFMAYQQFKKQ------------IQDQNLSDLMEKIE 512
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P +L ME EG+ VD + L + + E ++ A + N+ S
Sbjct: 513 IPLITVLANMEMEGIKVDEDALQHLSQTFDLELKSLEKEIYALAGEE------FNINSSQ 566
Query: 663 QLRQLLF 669
QL +LF
Sbjct: 567 QLGVILF 573
>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
Length = 940
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ K GRVH S ++ +T TGRLS+ PNLQN P +D KIR+AFI GN LI ADY
Sbjct: 655 SIHPKTGRVHTSFSLASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADY 714
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A +++AF G D H+ TA ++
Sbjct: 715 SQIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVF 750
>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
Length = 969
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA G+ L+ AD
Sbjct: 683 SYIFSKTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSAD 742
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRILAH+A+ K++ +AF G D H+ TA M+
Sbjct: 743 YSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF 779
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 155/386 (40%), Gaps = 105/386 (27%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
A +TE +D Q +++ FS+ PE F G+ DLL GG
Sbjct: 382 AFNTETTSLDPMQ------AKLVGFSLALQPEKAAYIPLEHFDEGEE----DLLRGGHIA 431
Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
R L P ED S+ K+ N +D V++ Y + +S F DTM ++ +D+
Sbjct: 432 SQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQYDIIISSFD-DTMLLSYAFDAG- 489
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
LT + +SE ++ IS KD+ K
Sbjct: 490 ---------ILTHNMDDLSERWLKHKP--------------ISYKDLTHNGK-------- 518
Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
KI++ A V+ Q Y+A + TL+L++ LK +L+ + M
Sbjct: 519 KITSFAQVDLKQAT------LYAAERADITLRLWQVLKPQLV------------ARGMTK 560
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPD 652
Y+ +P E+L +ME G+L+DR+ L E+ + A +E + D
Sbjct: 561 IYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ---------AD 611
Query: 653 AKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK- 706
K+ N+ S QL +LFG G +K S + + E + AEG P K
Sbjct: 612 EKF-NLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTL------EELAAEGHVLPRKI 664
Query: 707 --FRNIT-LRSIGVD-LPTEMYTATG 728
+R + L+S D LP+ +++ TG
Sbjct: 665 IEWRQLAKLKSTYTDALPSYIFSKTG 690
>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
Length = 929
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ GRVH S +I TGRL++ PNLQN P ++ +IR+AF+A PG L+ DY
Sbjct: 647 HINADTGRVHTSYSIAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKVLVALDY 706
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A ++ DAFK G D H+ TA M+
Sbjct: 707 SQIELRILAHIAGIDALKDAFKDGQDIHAATASEMF 742
>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
Length = 994
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E A + + + + E + L S + LQ + ++ GRVH S + + +TGRLS+
Sbjct: 679 ETLASQGAEVATLVLEWRQLSKLKSTYTDALQAA-INPATGRVHTSYSLVGAQTGRLSSN 737
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR AF+A PG+ L+ ADY Q+ELR+ AH+A+ ++ +AF G D
Sbjct: 738 DPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVPALREAFAHGED 797
Query: 901 FHSRTAMNMY 910
H+RTAM ++
Sbjct: 798 IHARTAMELF 807
>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
Length = 981
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ KIR+AFIA PG+ L+ ADY
Sbjct: 697 VNKETGRVHTSFALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYS 756
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LA +A+ S+ AF+ G D H+ TA M+
Sbjct: 757 QIELRLLAEIADTPSLRQAFQDGLDIHAMTASEMF 791
>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
Length = 921
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+G GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 636 LPLM---VNGTTGRVHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRK 692
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 693 ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF 734
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 94/363 (25%)
Query: 321 KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKID 380
K S N S+++ +++ Y ++ +D++ W+ L+ A DTE ++
Sbjct: 301 KTSSNAESDEVMAPVEAISAKYHTILTLDDLD-----TWIAKLSQAKLI-AIDTETTSLN 354
Query: 381 VKQETPVDHGEVICFSIYSGPEA------DFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
V I F+I +G A D+ + S I D+ L + P E
Sbjct: 355 YMDAKLVG----ISFAIEAGEAAYLPLAHDYLDAPSQI--DMATA-----LEKLRPLLES 403
Query: 435 PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGYSLEALTGDRK 492
+ KV N +D + N G+K+ G H DTM + +++S SR G +L+ L
Sbjct: 404 DNPAKVGQNLKYDISIFANVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYL----- 458
Query: 493 VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER 552
G+ + IS +D+ G+ + + + T AP
Sbjct: 459 ---------------GHKN------ISFEDVAGKGAKQLTFNQIDLDTAAP--------- 488
Query: 553 ELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVK 611
Y+A D+ TL+L++ L W +L+ +P + + E P ++L
Sbjct: 489 -----YAAEDADITLRLHQHL--------WPRLEKEP----ELAQVFTELELPLIQVLSD 531
Query: 612 METEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
+E +G+L+D LS+ +K+ + E EA K+ N+GS QL+
Sbjct: 532 IERQGVLIDPMLLSQQSDELAQKIDKLELEAYEIAGEKF-----------NLGSPKQLQV 580
Query: 667 LLF 669
L F
Sbjct: 581 LFF 583
>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
17393]
gi|189437164|gb|EDV06149.1| DNA-directed DNA polymerase [Bacteroides intestinalis DSM 17393]
Length = 941
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ + I + E + L+ ++ LPL ++ + GR+H S N
Sbjct: 620 YVTSEEVLESLRNKHEVIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 676
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI ADY Q+ELRI+AHL+ K+M
Sbjct: 677 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNM 736
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 737 IDAFLSGYDIHAATAAKIY 755
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NEF P +E+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 414 IVNEFRPLYENENSMKVGQNIKYDILVLQNYGVEVKGELFDTMLAHYVLQPELRHNMDY- 472
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++E YQ I + ++ G + G K P
Sbjct: 473 ----------LAEIYLHYQ--------------TIHIDELIGPK-----GKNQKNMRDLP 503
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
EE+ + Y+ D+ TLKL K +LE K G + + E
Sbjct: 504 PEEVYK--------YACEDADITLKL-----KNVLEEELKKQG-------VEHLFYEIEM 543
Query: 604 PFGEILVKMETEGMLVDREYLSE 626
P +L ME+ G+ +D E L +
Sbjct: 544 PLVRVLANMESNGVRIDTETLKQ 566
>gi|407772585|ref|ZP_11119887.1| DNA polymerase I [Thalassospira profundimaris WP0211]
gi|407284538|gb|EKF10054.1| DNA polymerase I [Thalassospira profundimaris WP0211]
Length = 943
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSAR 840
E A + D + L E + L S + L +++ GRVH S N TGRLS+
Sbjct: 629 EALAAQGHDLPAKLLEWRQLSKLKSTYTDAL-AHHINPNTGRVHTSYGQTNVNTGRLSSN 687
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ KIR AFIA PG+ LI ADY Q+ELR+LAH+A ++ +AFK G D
Sbjct: 688 DPNLQNIPIRSEEGRKIRTAFIAEPGHKLISADYSQIELRLLAHVAEIDALREAFKNGED 747
Query: 901 FHSRTAMNMY 910
H+ TA ++
Sbjct: 748 IHAATASKVF 757
>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 919
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 595 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 649
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 650 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 709
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 710 ANDEGMITAFAEGKDIHRATAAEIF 734
>gi|384208299|ref|YP_005594019.1| DNA polymerase I [Brachyspira intermedia PWS/A]
gi|343385949|gb|AEM21439.1| DNA polymerase I [Brachyspira intermedia PWS/A]
Length = 881
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ N L + + ++ K GR+H S N T TGRLS+ PNLQN P ++ +IR FI
Sbjct: 588 LKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIP 647
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
GN LI ADY Q+ELR+LAH +N +++AFK D H +TAM +Y
Sbjct: 648 EKGNLLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIY 694
>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 957
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|402819958|ref|ZP_10869525.1| DNA polymerase I superfamily protein [alpha proteobacterium
IMCC14465]
gi|402510701|gb|EJW20963.1| DNA polymerase I superfamily protein [alpha proteobacterium
IMCC14465]
Length = 951
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K GR+H S ++ +T TGRL++ PNLQN P +D +IR AF+A GN L+ ADY
Sbjct: 667 INAKTGRIHTSYSLASTTTGRLASSDPNLQNIPIRTEDGRRIRTAFVAEQGNLLVSADYS 726
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ S+ AF G D H+ TA M+
Sbjct: 727 QIELRLLAHIADIDSLRQAFADGQDIHAMTASEMF 761
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D+L +P +D SI K+ N FD VL ++V DTM M+ + +R G+
Sbjct: 420 DVLKRLSPLLQDASIMKILQNAKFDLQVLGQRKIEVYPIE-DTMLMSYALAAGQR---GH 475
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E ++G IS+K++ G K + +
Sbjct: 476 GMDELS-----------------------ELYLGHKPISIKELLGTGKSQITFDQVPLEK 512
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
P Y+A D+ T +L++ ++ +L+ DG + YQ
Sbjct: 513 ATP--------------YAAEDADITFRLWQMMRAELVR-----DG-------VVSVYQT 546
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
+P ++V+ME G+ VDR LS + + A + K A ++ N+ S
Sbjct: 547 TEKPLVPVIVEMEKNGIAVDRNVLSRLSGEFAQKMAAMEDDIYKLAGEN------FNIAS 600
Query: 661 DTQLRQLLF 669
QL +LF
Sbjct: 601 PKQLGDILF 609
>gi|374309980|ref|YP_005056410.1| DNA polymerase I [Granulicella mallensis MP5ACTX8]
gi|358751990|gb|AEU35380.1| DNA polymerase I [Granulicella mallensis MP5ACTX8]
Length = 1022
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 813 QGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
Q +++ NGR+H + N + T TGRLS+ PNLQN P +IR AFIA PGN L+
Sbjct: 738 QLPSLTDVNGRIHTTFNQVGTATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNLLMS 797
Query: 872 ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ADY Q+ELR++AH + +LDA++ G D H+ TA ++
Sbjct: 798 ADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTLTAAEVF 836
>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
Length = 892
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V K GRVH S N T TGRLS+ PNLQN P ++ IR+AFIA PG+ ++ ADY
Sbjct: 612 VDPKTGRVHTSYNQAITNTGRLSSSDPNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYS 671
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA---MNMYPHIRNA 916
Q+ELR+LAHL+ + + +AF AG D H RTA M+P + A
Sbjct: 672 QIELRVLAHLSGDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTA 715
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 434 DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
DP KK+ N +D VL+ G++++G DTM A L + SR ++G +L D ++
Sbjct: 375 DPDRKKIGQNLKYDYQVLQQSGVELAGIWCDTMLAAYLVNPSRNSQGLDALALEYLDHRM 434
Query: 494 MS 495
+S
Sbjct: 435 IS 436
>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis sp. HTCC2633]
gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
Length = 924
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S ++ T TGRLS+ PNLQN P ++ KIR+AF A PG+ ++ ADY
Sbjct: 640 INPNTGRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYS 699
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ +++ AF+ G D H+ TA M+
Sbjct: 700 QIELRLLAHIADVEALKQAFREGQDIHALTASEMF 734
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 110/276 (39%), Gaps = 76/276 (27%)
Query: 415 DLLDGGGR-------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
DL DGG + + L E+ +I KV N+ +D V + YG++V+ + DTM
Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYGVRVAPYD-DTML 436
Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
++ + + G L +R + G+T IS K++ G
Sbjct: 437 ISYVQAAGLHNHGMDEL----AERHL--------------GHT------CISFKEVCGTG 472
Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
K +K S + T Y+A D+ TL+L++ LK L
Sbjct: 473 KSQKRFSEIDLKTAT--------------EYAAEDADITLRLWELLKAGL---------- 508
Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRF 642
GK + Y+ +P ++L ME G+ VD LS + +K+A AE+ A
Sbjct: 509 --AGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSSDFAQKMAEAEETA----- 561
Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
H N+GS Q+ ++LFG G P K
Sbjct: 562 ------HKLAGTKFNLGSPKQIGEILFGEMGLPGGK 591
>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 957
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|404251763|ref|ZP_10955731.1| DNA polymerase I [Sphingomonas sp. PAMC 26621]
Length = 918
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
D + + E + L S + LQ + ++ GRVH S ++ +TGRLS+ PNLQN P
Sbjct: 611 DMATKVLEWRQLSKLKSTYTDALQ-AQINPATGRVHTSYSLTGAQTGRLSSTDPNLQNIP 669
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+ +IR AF+A PGN L+ ADY Q+ELR+ AH+A+ + DAF +G D HS TA
Sbjct: 670 IRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPQLRDAFASGADIHSLTAQE 729
Query: 909 MY 910
++
Sbjct: 730 LF 731
>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 957
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|425071066|ref|ZP_18474172.1| DNA polymerase I [Proteus mirabilis WGLW4]
gi|404599891|gb|EKB00344.1| DNA polymerase I [Proteus mirabilis WGLW4]
Length = 949
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 664 LPLM---VNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFK 720
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 721 IVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVF 762
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 65/252 (25%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L P ED +I K+ N FD ++EN G++++G + DTM + + +S +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
++ L K ++ +++ KG G+++ I
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E E Y+A D+ TL L+++L ++ ++ P K + Y +
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550
Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
P +L +ME +G+L+D + L+ EI +++A E+E + N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET-----------FALAGQEFN 599
Query: 658 VGSDTQLRQLLF 669
+ S QL+++LF
Sbjct: 600 LSSPKQLQEILF 611
>gi|395782170|ref|ZP_10462574.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
gi|395419109|gb|EJF85410.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
Length = 967
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 679 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 730
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ K++ +AF G D H+ TA M+
Sbjct: 731 PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF 777
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 151/390 (38%), Gaps = 113/390 (28%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE--- 427
A DTE +D Q +++ FS+ PE + I ++ D G DLL +
Sbjct: 380 AFDTETTSLDPMQ------AKLVGFSLALQPEK-----AAYIPLEHFDEGEGDLLRDGRI 428
Query: 428 ------------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
P ED ++ K+ N +D V++ Y +++ F DTM ++ + D+
Sbjct: 429 ASQIEIQKALALLKPLLEDSAVLKIGQNIKYDWLVMKQYDIEIRSFD-DTMLLSYVLDAG 487
Query: 476 RRTEGGYSL-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
T L E G + + AY+ M KG
Sbjct: 488 TLTHNMDDLSERWLGHKPI------AYKDLMHKGK------------------------- 516
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
KI++ A V+ Q Y+A D+ TL+L++ LK +L+ + M
Sbjct: 517 --KITSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQGM 556
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
Y+ +P E+L +ME G+L+DR+ L E+ + A +E +
Sbjct: 557 VKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 607
Query: 651 PDAKYMNVGSDTQLRQLLF-------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT 703
D K+ N+ S QL +LF G K S S + E + AEG
Sbjct: 608 ADEKF-NLASPKQLGDILFDKMGLPGGTKTKGGQWSTSAQV--------LEELAAEGHIL 658
Query: 704 PSK---FRNIT-LRSIGVD-LPTEMYTATG 728
P K +R +T L+S D LP+ + TG
Sbjct: 659 PRKIIEWRQLTKLKSTYADALPSYILPKTG 688
>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
Length = 950
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A+E L E + L S + LP ++ K GRVH
Sbjct: 626 KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 681 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKVVAADYSQIELRIMAHL 740
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN M AF G D H TA ++
Sbjct: 741 ANDAGMQKAFAEGKDIHRSTAAEIF 765
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 156/407 (38%), Gaps = 105/407 (25%)
Query: 303 SNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLT 362
+ ++ P N AA + + E+ K+EI RSK Y V + A+ W+
Sbjct: 302 TKERMPNNYAA-----TQAVEKTESFAKVEIDRSK----YETVR-----TEAQLEKWIEK 347
Query: 363 NKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP----------EADFGNGKSCI 412
+ + LV A DTE +DV V I F + SG E G+ +
Sbjct: 348 IQAEKLV-AVDTETNALDVMSAELVG----ISFGLASGEACYIPLTHKEEVSEQAGQGDL 402
Query: 413 WVDLLDGGGRDL----------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
+ + G +L L P ED IKK+ N +D V N+G++V G
Sbjct: 403 FAENTANVGYELVKNQINLTACLAALKPILEDKQIKKIGQNIKYDLTVFANHGIEVQGVE 462
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
DTM L ++ + G ++++ L + + A+++ KG F KI +
Sbjct: 463 FDTM----LESYTQNSTGRHNMDDLA--ERYLGHKTIAFEEIAGKGKNQLTF-DKIVL-- 513
Query: 523 IFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
++ Y+A D+ T+KL+++L
Sbjct: 514 ------------------------------DVASEYAAEDADVTMKLHQTLFP------- 536
Query: 583 KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAA 638
+L+ P ++ + E P +L +E G+L+D + L EIE+ AE EA
Sbjct: 537 ELEKTP----TLLKLFNEIEMPLVRVLSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAE 591
Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
V H + N+ S QL+++LF G P K + P
Sbjct: 592 V---------HQVAGQEFNLASTKQLQEILFEKLGLPVKKKTPKGAP 629
>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 957
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHCATAAEIF 772
>gi|378765067|ref|YP_005193526.1| DNA polymerase I [Pantoea ananatis LMG 5342]
gi|386017735|ref|YP_005936034.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|386077330|ref|YP_005990855.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|354986511|gb|AER30635.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|365184539|emb|CCF07489.1| DNA polymerase I [Pantoea ananatis LMG 5342]
Length = 928
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+ PNLQN P + +IRQAF+A GN
Sbjct: 643 LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF 741
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P EDP KV N +D VL+NY ++++G DTM + + +S G +
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + ++ +++ KG F +I++
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E Y+A D+ TL+L+ L+M +L+ + P K +++
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
P +++ ++E G+L+D+ L++ K +R + K H + N+ S
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583
Query: 663 QLRQLLF---GGKPNSK 676
QL+ +LF G KP K
Sbjct: 584 QLQVILFEKQGIKPTKK 600
>gi|423714748|ref|ZP_17688972.1| DNA polymerase I [Bartonella elizabethae F9251]
gi|395430967|gb|EJF96995.1| DNA polymerase I [Bartonella elizabethae F9251]
Length = 969
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 681 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ K++ +AF G D H+ TA M+
Sbjct: 733 SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF 779
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
A DTE +D Q +++ FS+ P F G+ DLL GG
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431
Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
R L P ED ++ K+ N +D V++ Y + + F DTM ++
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
Y+L+A T + D+S E ++G I+ KD+ K
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
KI++ A V+ Q Y+A D+ TL+L++ LK +L+ + M
Sbjct: 519 --KITSFAQVDLRQAT------LYAAEDADITLRLWQVLKPQLV------------SRGM 558
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
Y+ +P E+L +ME G+L+DR+ L E+ + A +E +
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609
Query: 651 PDAKYMNVGSDTQLRQLLFG 670
D K+ N+ S QL +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628
>gi|395792664|ref|ZP_10472088.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395432221|gb|EJF98210.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 968
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+AN ++ +AF G D H+ TA M+
Sbjct: 732 PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMF 778
>gi|423713326|ref|ZP_17687586.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395423367|gb|EJF89562.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 968
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+AN ++ +AF G D H+ TA M+
Sbjct: 732 PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMF 778
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 51/200 (25%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P E+ ++ K+ N +D V++ +G+ +S F DTM ++ D+ T
Sbjct: 439 LALLKPILENQAVLKIGQNIKYDWLVMKQHGIVISSFD-DTMLLSYALDAGTLTHN---- 493
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
M + + + + S D + GK KI++ A V
Sbjct: 494 ---------MDDLSERWLRHKSIAYKDLTYNGK-------------------KITSFAQV 525
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+ Q Y+A D+ TL L+K LK +L+ + M Y+ +P
Sbjct: 526 DLKQAT------LYAAEDADVTLHLWKVLKPQLV------------ARGMTKIYERLDRP 567
Query: 605 FGEILVKMETEGMLVDREYL 624
E+L +ME G+L+DR+ L
Sbjct: 568 LIEVLARMEERGILIDRQVL 587
>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
Length = 928
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+ PNLQN P + +IRQAF+A GN
Sbjct: 643 LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF 741
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P EDP KV N +D VL+NY ++++G DTM + + +S G +
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + ++ +++ KG F +I++
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E Y+A D+ TL+L+ L+M +L+ + P K +++
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
P +++ ++E G+L+D+ L++ K +R + K H + N+ S
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583
Query: 663 QLRQLLF---GGKPNSK 676
QL+ +LF G KP K
Sbjct: 584 QLQVILFEKQGIKPTKK 600
>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
Length = 934
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ K GRVH S + T TGRLS+R PNLQN P
Sbjct: 633 LLEHRSLAKLKSTYTDKLPLM---INPKTGRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 689
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 690 EEGRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 748
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 130/305 (42%), Gaps = 66/305 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DL 424
+ A DTE +D ++ V + F+I +G A G D LD + D+
Sbjct: 355 LFAFDTETDSLDTQEARLVG----MSFAIEAGHAAYLPIGH-----DYLDAPVQLSLDDV 405
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
+ P E+ I K+ N +D VLENYG+++ G DTM + + +S G + +
Sbjct: 406 IAVMKPILENEKIGKIGQNLKYDAEVLENYGIELKGIAFDTMLESYVLNSVAGM-GRHDM 464
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
++L DR + + +S ++I G K KK + +I P+
Sbjct: 465 DSL-ADRHLNHK--------------------TVSFEEIAG--KGKKQLTFNQI----PL 497
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
E+ +Y+A D+ TL L+++L +L E +P + +Q P
Sbjct: 498 EQAA--------NYAAEDADVTLLLHQALFPQLEE-------EP----KLAHVFQNIEMP 538
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
+LV+ME +G+L+D L+ K+ A + K A + + N+ S QL
Sbjct: 539 LVPVLVRMERKGVLIDAPTLAAQSKIITAR----LAELEKQAFELA--GEEFNLASPKQL 592
Query: 665 RQLLF 669
+ +LF
Sbjct: 593 QTILF 597
>gi|357403761|ref|YP_004915685.1| DNA polymerase I [Methylomicrobium alcaliphilum 20Z]
gi|351716426|emb|CCE22086.1| DNA polymerase I (POL I) [Methylomicrobium alcaliphilum 20Z]
Length = 907
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q V+ K GRVH S + TGRLS+ PNLQN P + +IRQAFIA PG
Sbjct: 623 LPQQ---VNPKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSPEGRRIRQAFIAPPGYV 679
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ ADY Q+ELRI+AHL+ +L AFK G D HS TA ++
Sbjct: 680 LVAADYSQIELRIMAHLSGDAGLLAAFKQGQDIHSATAAEVF 721
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 55/246 (22%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P E+P+ K+ N +D +VL N+G+++ G DTM + + +S
Sbjct: 380 VLEKMRPLLENPNKAKLGQNLKYDANVLANHGIELRGIAHDTMLESYVLNS--------- 430
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+ +K N D+ K + + AGK + P
Sbjct: 431 --------------------NATKHNMDD------LAKTYLNYTTIHYEDVAGKGAKQIP 464
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E+ E+ Y+A D+ TL+L++ L KKL D P S+ Y+E
Sbjct: 465 FQEVAIEQA---TPYAAEDADITLRLHEVLSKKL-------DQNP----SLVQLYREIEI 510
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P E+L ++E G+L+D E L AR QE A H + N+GS Q
Sbjct: 511 PLVEVLSRIERNGVLLDTEML------ARQSQELAAQIASIEQHAHDLAGQAFNLGSPKQ 564
Query: 664 LRQLLF 669
++ +++
Sbjct: 565 IQSIIY 570
>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 957
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|395778900|ref|ZP_10459411.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
gi|395417075|gb|EJF83427.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
Length = 969
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 681 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ K++ +AF G D H+ TA M+
Sbjct: 733 SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF 779
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
A DTE +D Q +++ FS+ P F G+ DLL GG
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431
Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
R L P ED ++ K+ N +D V++ Y + + F DTM ++
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
Y+L+A T + D+S E ++G I+ KD+ K
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
KI++ A V+ Q Y+A D+ TL+L++ LK +L+ + M
Sbjct: 519 --KITSFAQVDLRQAT------LYAAEDADITLRLWQVLKPQLV------------SRGM 558
Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
Y+ +P E+L +ME G+L+DR+ L E+ + A +E +
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609
Query: 651 PDAKYMNVGSDTQLRQLLFG 670
D K+ N+ S QL +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628
>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
Length = 932
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|190149819|ref|YP_001968344.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 957
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|395780492|ref|ZP_10460954.1| DNA polymerase I [Bartonella washoensis 085-0475]
gi|395418838|gb|EJF85155.1| DNA polymerase I [Bartonella washoensis 085-0475]
Length = 968
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIRQAFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELR+LAH+A+ ++ +AF G D H+ TA M+
Sbjct: 732 PEGHVLLSADYSQIELRVLAHIADIDALKEAFAQGQDIHAITASQMF 778
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 57/246 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P ++ ++ K+ N +D V++ G+ + F DTM ++ D+
Sbjct: 439 LKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG--------- 488
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
ALT + +SE Y+ I+ KD+ K KIS+ A V
Sbjct: 489 -ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK--------KISSFAQV 525
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+ Q Y+A D+ TL+L++ LK +L+ K M Y+ +P
Sbjct: 526 DLKQAT------FYAAEDADITLRLWQVLKPQLV------------AKGMTKIYERLDRP 567
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
E+L +ME G+L+D++ L R E A F + + N+ S QL
Sbjct: 568 LIEVLARMEERGILIDQQIL------LRLSGELAQAAFILEEEIYQLAGEKFNIASPKQL 621
Query: 665 RQLLFG 670
+LFG
Sbjct: 622 GNILFG 627
>gi|399062513|ref|ZP_10746595.1| DNA polymerase I [Novosphingobium sp. AP12]
gi|398033687|gb|EJL26978.1| DNA polymerase I [Novosphingobium sp. AP12]
Length = 948
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E A + + + + E + L S + LQ + ++ RVH S + + +TGRLS+
Sbjct: 633 EGLAAQGAEVATKVLEWRQLSKLRSTYTEALQAA-INPATSRVHTSYSLVGAQTGRLSST 691
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR F+A PGN L+ ADY Q+ELR+ AH+A+ S+ +AF G D
Sbjct: 692 DPNLQNIPIRTEIGRQIRDCFVAEPGNVLLSADYSQIELRLAAHMADVPSLKEAFAEGED 751
Query: 901 FHSRTAMNMY 910
HSRTAM M+
Sbjct: 752 IHSRTAMEMF 761
>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
Length = 952
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREACDA----ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
+ T +E E+ I + E + L+S +I LP ++ + G +H S N
Sbjct: 631 YVTSEEVLESLRGKHGIIGKILEYRGLKKLLSTYIDSLP---QLINPRTGHIHTSFNQAV 687
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P ++D +IR+AFI G ADY Q+ELRI+AHL+ ++M
Sbjct: 688 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNM 747
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF++G D H+ TA +Y
Sbjct: 748 IDAFRSGYDIHAATAAKIY 766
>gi|407692488|ref|YP_006817277.1| DNA polymerase I [Actinobacillus suis H91-0380]
gi|407388545|gb|AFU19038.1| DNA polymerase I [Actinobacillus suis H91-0380]
Length = 957
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 957
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|359407990|ref|ZP_09200462.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676747|gb|EHI49096.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
Length = 950
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+V+ + GRVH S + + TGRLS+ PNLQN P + +IR AF+A PG LI ADY
Sbjct: 665 SVNPRTGRVHTSFSMVGASTGRLSSSDPNLQNIPIRTAEGRQIRTAFVAKPGCKLISADY 724
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR++AH+A SM++AFK G D H++TA ++
Sbjct: 725 SQIELRLVAHVAEETSMIEAFKDGVDIHAQTAAEVF 760
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 92/245 (37%), Gaps = 53/245 (21%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L+ D S+ K+ HN +D H+ + G GG+SL
Sbjct: 417 LSRLKELCNDSSVLKIGHNLKYDAHIFLHEG-----------------------NGGFSL 453
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
A+ +D + G TD + ++ ++ +K + GK + P
Sbjct: 454 NAV--------DDTMCLSYVLDAGRTDRHGLDHLA-SNLLQVSTIKYEEVCGKGAKQIPF 504
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
E+ ++ +Y+A D+ TL+L+ LK +L + M Y+ +P
Sbjct: 505 AEVDVQQ---ACAYAAEDADITLRLWMMLKPRLAR------------EGMAHVYERLERP 549
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
IL KME G+ VD+ L R + AV A H + NV S QL
Sbjct: 550 LIPILAKMEAAGIAVDQSILK------RLSADFAVRIAELEAEIHNQAGEPFNVASPKQL 603
Query: 665 RQLLF 669
++LF
Sbjct: 604 GEVLF 608
>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
Length = 612
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 327 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 383
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 384 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 425
>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 957
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ ++ A + L E + L S + LPL ++ K GRVH
Sbjct: 633 KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 688 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 748 ANDEGMITAFAEGKDIHRATAAEIF 772
>gi|386310384|ref|YP_006006440.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
gi|418243097|ref|ZP_12869591.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433548771|ref|ZP_20504819.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
gi|351777459|gb|EHB19671.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431790285|emb|CCO67859.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
Length = 932
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 932
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
Length = 932
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQ 756
>gi|339499087|ref|YP_004697122.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
gi|338833436|gb|AEJ18614.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
Length = 984
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 775 NNKIFATEQEAREACDAISA-LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINT 832
+ + E+ ARE D + A + ++ L S ++ L ++ +G++GR+H + T
Sbjct: 665 STDVAVLEELARE--DPVPAYILRYRTLAKLKSTYVDTL--ADQAGRDGRLHTHFVQTGT 720
Query: 833 ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSML 892
TGRLS+R PNLQN P +++ +IRQAF+A PG LI ADY Q+EL +LAHL+ ++
Sbjct: 721 ATGRLSSRDPNLQNIPIRDEEGRRIRQAFVAEPGTLLISADYSQIELVVLAHLSQDPGLI 780
Query: 893 DAFKAGGDFHSRTAMNMY 910
+AF G D H RTA ++
Sbjct: 781 EAFLKGVDVHRRTASLIF 798
>gi|451941315|ref|YP_007461952.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900702|gb|AGF75164.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 968
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GR+H + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+AN ++ +AF G D H+ TA M+
Sbjct: 732 PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMF 778
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 57/245 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P E+ +I K+ N +D V++ +G+ +S F DTM + D+ T
Sbjct: 439 LALLKPILENQAILKIGQNIKYDWLVMKQHGIVISSFD-DTMLFSYALDAGTLTH----- 492
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
N D+ + + K I + L +G KI++ A V
Sbjct: 493 ------------------------NMDDLSVRWLGHKPI-AYKDLTHNGK--KITSFAQV 525
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+ LQ+ Y+A D+ TL+L++ LK +L+ + M Y+ + +P
Sbjct: 526 D-LQQATL-----YAAEDADVTLRLWQVLKPQLV------------AQGMTKIYERFDRP 567
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
E+L +ME G+L+DR+ L R +E A F + + N+ S QL
Sbjct: 568 LIEVLARMEERGILIDRQIL------LRLSEELAQAAFILEEEIYQLAGEKFNLASPKQL 621
Query: 665 RQLLF 669
+LF
Sbjct: 622 GDILF 626
>gi|378581671|ref|ZP_09830315.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
gi|377815585|gb|EHT98696.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
Length = 927
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + V+G RVH S + T TGRLS+ PNLQN P + +IRQAF+A GN
Sbjct: 642 LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 698
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 699 IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATAAEVF 740
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 68/261 (26%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P EDP + KV N +D VL+NY ++++G DTM + + +S G +
Sbjct: 399 VLAQLKPLLEDPDVSKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 455
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + ++ +++ KG F +I++
Sbjct: 456 MDSLSA--RWLNHKTVTFEEIAGKGKNQLTF-NQIAL----------------------- 489
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E Y+A D+ TL+L+ L+M +L+ + P K +++
Sbjct: 490 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 529
Query: 604 PFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P ++ ++E G+L+D+ L++ ++A E+EA H + N+
Sbjct: 530 PLLRVISRIERNGVLIDQAILAQHSKELTARLAELEREA-----------HELAGEPFNL 578
Query: 659 GSDTQLRQLLF---GGKPNSK 676
S QL+ +LF G KP K
Sbjct: 579 SSTKQLQVILFEKQGIKPTKK 599
>gi|406979046|gb|EKE00901.1| hypothetical protein ACD_21C00255G0003 [uncultured bacterium]
Length = 896
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LPLQ + K RVH S N T TGRLS+ PNLQN P
Sbjct: 595 ILEYRSLSKLKSTYTDALPLQ---ICPKTSRVHTSYNQAVTSTGRLSSTDPNLQNIPIRN 651
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
++ KIRQAFIA PG +LI DY Q+ELR++AHL+ K++ AF D H TA ++
Sbjct: 652 EEGRKIRQAFIAPPGFTLISVDYSQIELRLMAHLSQDKNLCRAFHCAADVHRATAAEIFN 711
Query: 912 HIRNAVETGQ 921
NAV Q
Sbjct: 712 IELNAVTDTQ 721
>gi|387770848|ref|ZP_10127021.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
gi|386903269|gb|EIJ68085.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
Length = 956
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ K GRVH S + T TGRLS+ PNLQN P + +IRQAFIA PG +I ADY
Sbjct: 677 VNPKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIARPGFKVIAADYS 736
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL++ K ++ AF G D H TA ++
Sbjct: 737 QIELRIMAHLSSDKGLMTAFSEGKDIHRSTAAEIF 771
>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420260959|ref|ZP_14763621.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|404511594|gb|EKA25467.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 932
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
Length = 932
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF 745
>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
16795]
gi|164603147|gb|EDQ96612.1| DNA-directed DNA polymerase [Clostridium bartlettii DSM 16795]
Length = 882
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
K ++N ++ ++ E D I+ ++ ++S +L + ++ K GR+H S
Sbjct: 558 KTGYSTNAEVLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKI----INPKTGRIHSSF 613
Query: 829 NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
N T TGR+S+ PN+QN P + IR+ F+A L+ ADY Q+ELR+LAH++
Sbjct: 614 NQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSG 673
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
++M+DAFK G D HS+TA ++
Sbjct: 674 DENMIDAFKHGEDIHSKTASQIF 696
>gi|389794440|ref|ZP_10197592.1| DNA polymerase I [Rhodanobacter fulvus Jip2]
gi|388432246|gb|EIL89260.1| DNA polymerase I [Rhodanobacter fulvus Jip2]
Length = 914
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TET 834
+T +EA EA + L + S+ L S + L G V+ + GRVH S + T
Sbjct: 595 STNEEALEAIADMHELPRLILEHRSLAKLRSTYTDKLSGI-VNPRTGRVHTSYHQGAVAT 653
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P ++ +IRQAFIA PG ++ ADY Q+ELRI+AHL+ + +L A
Sbjct: 654 GRLSSTDPNLQNIPVRTEEGRRIRQAFIAPPGWKVMAADYSQVELRIMAHLSADEGLLRA 713
Query: 895 FKAGGDFHSRTAMNMYPHIRNAVETGQ 921
F+ GGD H TA ++ V T Q
Sbjct: 714 FREGGDVHRATAAEVFGVAPEEVTTNQ 740
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 77/320 (24%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
+W+ L+ A DTE ID + V I FS+ G K+C
Sbjct: 328 IWLQRLHDAELI-AFDTETTSIDAMRADMVG----ISFSVELG--------KACYIPVAH 374
Query: 418 DGGG------RD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
D G RD ++ P FEDP+ K+ + +D ++L +YG+ V G D+M +
Sbjct: 375 DYPGAPAQLDRDTVVRALKPIFEDPAKAKLGQHAKYDINILSHYGVAVQGLKYDSMLESY 434
Query: 471 LWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLK 530
+W++ T + +++L +K + D Y++ KG
Sbjct: 435 IWNA---TATRHDMDSLA--KKYLGYDTVKYEEVAGKG---------------------- 467
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPV 589
A +IS + + + Y+A D+ T +L+ +L W KL +P
Sbjct: 468 ----AKQIS-------FSQVDLDTACRYAAEDADITWRLHHAL--------WPKLQVEP- 507
Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKH 649
S+ Y++ P +L ME G+L+D + L R Q+ H
Sbjct: 508 ---SLRRVYEDIEIPLVPVLAAMERRGVLIDGDELR------RQSQQLGKRMLELQRQCH 558
Query: 650 CPDAKYMNVGSDTQLRQLLF 669
+ N+ S QL+ +LF
Sbjct: 559 GLAGREFNLDSPKQLQAILF 578
>gi|448748354|ref|ZP_21729991.1| DNA polymerase 1 [Halomonas titanicae BH1]
gi|445564056|gb|ELY20186.1| DNA polymerase 1 [Halomonas titanicae BH1]
Length = 931
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ KIRQAFIA PG ++ ADY Q+EL
Sbjct: 655 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 714
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +L+AF G D H+ TA ++
Sbjct: 715 RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF 745
>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
Length = 901
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L + ++ L S + LPLQ V+ GRVH S + T TGRLS+ PNLQN P
Sbjct: 600 LLQYRTLSKLKSTYTDRLPLQ---VNPHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRT 656
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQ FIA PG L+ ADY Q+ELRI+AHL+ + +L AF+A D H RTA ++
Sbjct: 657 AEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEVF 715
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 54/219 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P EDP KV N FD +VL NYG+++ G H D+M + + DS+
Sbjct: 374 VLARLKPLLEDPRHGKVGQNLKFDRNVLANYGIELQGIHHDSMLESYVLDST-------- 425
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++ N D +++K R + + AGK S P
Sbjct: 426 ---------------------ATRHNMD-----SLALK-YLQRTTITYEMVAGKGSKQLP 458
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
++ E+ Y+A D+ +L+L++ ++ + +S+ YQE
Sbjct: 459 FNQVTIEKAA---PYAAEDADISLQLHRYFWPRIQQ-----------EESLRRLYQELEI 504
Query: 604 PFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEA 637
P +L +ME G+ VD L ++ + EQEA
Sbjct: 505 PLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEA 543
>gi|110636269|ref|YP_676477.1| DNA polymerase I [Chelativorans sp. BNC1]
gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
Length = 978
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
+ GRVH S ++ +T TGRLS+ PNLQN P + KIR AFIA PG LI ADY Q+E
Sbjct: 696 ETGRVHTSYSLASTTTGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIE 755
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+A+ + AF G D H+ TA M+
Sbjct: 756 LRVLAHVADIPELKKAFAEGMDIHAMTASEMF 787
>gi|352107004|ref|ZP_08961725.1| DNA polymerase I [Halomonas sp. HAL1]
gi|350597455|gb|EHA13594.1| DNA polymerase I [Halomonas sp. HAL1]
Length = 929
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ KIRQAFIA PG ++ ADY Q+EL
Sbjct: 653 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 712
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +L+AF G D H+ TA ++
Sbjct: 713 RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF 743
>gi|393785970|ref|ZP_10374114.1| DNA polymerase I [Bacteroides nordii CL02T12C05]
gi|392661084|gb|EIY54681.1| DNA polymerase I [Bacteroides nordii CL02T12C05]
Length = 935
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+S +I LP ++ + GRVH S N
Sbjct: 614 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLSTYIDALP---QLINPRTGRVHTSFNQTV 670
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 671 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGALFFSADYSQIELRIMAHLSEDKNM 730
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 731 IDAFLSGYDIHAATAAKVY 749
>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
Length = 922
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG AS ++ + R A + ++ + ++ + S ++ PL + GR+H +
Sbjct: 594 KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649
Query: 829 NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
N T TGRLS+ PNLQN P ++R FIA PG +L+ ADY Q+ELR+LAH++
Sbjct: 650 NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
++LDAF+ G D H+RTA +Y
Sbjct: 710 DAALLDAFRQGEDIHARTAALIY 732
>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [gamma proteobacterium HTCC2207]
gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
Length = 926
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GR+H S + + T TGRLS+ PNLQN P + ++RQAF+A PG L+ ADY
Sbjct: 646 INSVTGRIHTSYHQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYS 705
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ S+L AF AG D H TA ++
Sbjct: 706 QIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVF 740
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 81/321 (25%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ K LV A DTE +D + +++ S+ + P G++C D
Sbjct: 340 WIEKIKSADLV-AVDTETTSLDYMR------AKLVGISLSTAP------GEACYIPFAHD 386
Query: 419 --GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
G L EFA P+ EDP+ KV N +D VL +G+ + G DTM + +
Sbjct: 387 YMGAPEQLQPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQHGISLRGITFDTMLESYV 446
Query: 472 WDS--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
DS SR +L L G+ + D GK + + F + L
Sbjct: 447 LDSVASRHDMDSLALNYL-GEETIKFAD----------------VAGKGAAQLTFNQVAL 489
Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKP 588
+ G Y+A D+ TL+L+++L W ++ +P
Sbjct: 490 DQAG-----------------------PYAAEDADITLRLHQTL--------WPRVAAEP 518
Query: 589 VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK 648
++ ++E P +L ++E G LVD L + + E A + A +
Sbjct: 519 ----TLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQ----ELSARLGELETEAWE 570
Query: 649 HCPDAKYMNVGSDTQLRQLLF 669
+ N+ S QL ++LF
Sbjct: 571 LA--GQQFNLASPKQLGEILF 589
>gi|345891706|ref|ZP_08842544.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp.
6_1_46AFAA]
gi|345047998|gb|EGW51846.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp.
6_1_46AFAA]
Length = 922
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG AS ++ + R A + ++ + ++ + S ++ PL + GR+H +
Sbjct: 594 KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649
Query: 829 NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
N T TGRLS+ PNLQN P ++R FIA PG +L+ ADY Q+ELR+LAH++
Sbjct: 650 NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
++LDAF+ G D H+RTA +Y
Sbjct: 710 DAALLDAFRQGEDIHARTAALIY 732
>gi|395788138|ref|ZP_10467714.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
gi|395409920|gb|EJF76505.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
Length = 968
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 732 PKGHVLLSADYSQIELRILAHIADITALKEAFAKGQDIHAMTASQMF 778
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 78/312 (25%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGRDL----- 424
A DTE +D Q +++ FS+ P +A + + D L GG R +
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALKPGKAAYVPLEHVEGEDDLLGGARIVGQIEP 435
Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
L P E+ ++ K+ N +D V++ G+ + F DTM ++ + D+ T
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQKGIVIRSFD-DTMLLSYVLDAGSLTHN- 493
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSK---GNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
D+SK G+T I+ KD+ K KI
Sbjct: 494 --------------------MDDLSKRWLGHT------PIAYKDLTHNGK--------KI 519
Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
++ A V+ Q Y+A D+ TL+L++ LK +L+ + M Y
Sbjct: 520 TSFAKVDLKQAT------LYAAEDADVTLRLWQVLKPQLV------------SQRMTKIY 561
Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
+ + +P E+L +ME G+LVDR+ L R E A + + N+
Sbjct: 562 ERFDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAALILEEEIYQLAGEKFNI 615
Query: 659 GSDTQLRQLLFG 670
S QL +LFG
Sbjct: 616 ASPKQLGDILFG 627
>gi|359396295|ref|ZP_09189347.1| DNA polymerase I [Halomonas boliviensis LC1]
gi|357970560|gb|EHJ93007.1| DNA polymerase I [Halomonas boliviensis LC1]
Length = 894
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ KIRQAFIA PG ++ ADY Q+EL
Sbjct: 618 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 677
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +L+AF G D H+ TA ++
Sbjct: 678 RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF 708
>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
Length = 894
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPLQ V+ +GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A G +
Sbjct: 610 LPLQ---VNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRIREAFVASNGYT 666
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ ADY Q+ELRI+AHL+ +S+L AF AG D H TA ++
Sbjct: 667 LLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIF 708
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 134/324 (41%), Gaps = 89/324 (27%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++ + P EDP+ KV N +D HVL N+ + + G DTM + + DS T +
Sbjct: 366 VMADLKPLLEDPTKLKVGQNLKYDRHVLLNHDINLQGIAHDTMLESYVLDS---TATRHD 422
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L KK +D I +DI G+ K + + + AP
Sbjct: 423 MDSLA---------KKYLDRD------------TIHFEDIAGKGKKQLTFNQIGLEEAAP 461
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L ++ + +P S+ Y E
Sbjct: 462 --------------YAAEDADITLQLHETLWPRI---------QAIP--SLVKVYSELEM 496
Query: 604 PFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +E G+ +D L ++A E++A H + N+
Sbjct: 497 PLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQA-----------HESAGQTFNL 545
Query: 659 GSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPN---------TEGVIAEGKKTPS---K 706
GS QL+++L+ + + LP+++ K P +G+ +G + P +
Sbjct: 546 GSPKQLQEILY--------EKQELPVKK--KTPKGQPSTAEEVLQGLADDGYELPQIIMQ 595
Query: 707 FRNIT-LRSIGVD-LPTEMYTATG 728
+R ++ L+S D LP ++ ++G
Sbjct: 596 YRGLSKLKSTYTDKLPLQVNKSSG 619
>gi|374328706|ref|YP_005078890.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
gi|359341494|gb|AEV34868.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
Length = 980
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S ++ + GRVH S ++ +T TGRLS+ PN+QN P + KIRQAFIA G LI AD
Sbjct: 694 SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMF 790
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P EDP++ K+ N +D VL+ YG++++ F DTM ++ D+ GG ++ L+
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
++ ++ +++ G + +IS F + L K
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
+Y+A D+ TL+L+K LK +L + M Y+ +P L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584
Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
KME G+ +DR+ LS + E A R + H + NVGS QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638
Query: 670 G--GKPNSK 676
G G P K
Sbjct: 639 GKMGLPGGK 647
>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
Length = 949
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 80/145 (55%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ + E I E + L S + LPL V+ K RVH
Sbjct: 624 KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+R PNLQN P ++ +IRQAFI G ++ ADY Q+ELRI+AHL
Sbjct: 678 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHL 737
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ K +LDAF G D H TA ++
Sbjct: 738 SQDKGLLDAFAQGKDIHRATASEVF 762
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 65/252 (25%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L P ED +I K+ N FD ++EN G++++G + DTM + + +S +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
++ L K ++ +++ KG G+++ I
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E E Y+A D+ TL L+++L ++ ++ P K + Y +
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550
Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
P +L +ME +G+L+D + L+ EI +++A E+E + N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET-----------FALAGQEFN 599
Query: 658 VGSDTQLRQLLF 669
+ S QL+++LF
Sbjct: 600 LSSPKQLQEILF 611
>gi|407768162|ref|ZP_11115541.1| DNA polymerase I [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288875|gb|EKF14352.1| DNA polymerase I [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 941
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSAR 840
E A + D + + E + L S + L ++++ + GRVH S N TGRLS+
Sbjct: 627 EALAAQGHDLPTKILEWRQLSKLKSTYTDAL-ANHINPETGRVHTSYGQTNVNTGRLSSN 685
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ KIR AFI+ PG LI ADY Q+ELR+LAH+A ++ DAFK G D
Sbjct: 686 DPNLQNIPIRSEEGRKIRTAFISEPGCKLISADYSQIELRLLAHVAEIDALRDAFKNGED 745
Query: 901 FHSRTAMNMY 910
H+ TA ++
Sbjct: 746 IHAATASKVF 755
>gi|386289429|ref|ZP_10066559.1| DNA polymerase I [gamma proteobacterium BDW918]
gi|385277492|gb|EIF41474.1| DNA polymerase I [gamma proteobacterium BDW918]
Length = 894
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPLQ + K GR+H S + TGRLS+ PNLQN P + +IRQAFIA PG
Sbjct: 610 LPLQ---IDPKTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRSAEGRRIRQAFIAPPGYV 666
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + ++DAF G D H TA ++
Sbjct: 667 ILAADYSQIELRIMAHLSGDRGLVDAFSRGEDIHRATAAEVF 708
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 56/257 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLLDGGGRDLLNE 427
+ A DTE ++ Q V + F++ +G A G + V D LD +L +
Sbjct: 317 IFAFDTETTSLNYMQARIVG----VSFAVKAGEAAYLPFGHDYLDVPDQLDEA--HVLAQ 370
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
P EDP + KV N +D +VL N+G+ + G H DTM + + DS
Sbjct: 371 LKPLLEDPELYKVGQNLKYDANVLLNHGIALRGIHDDTMLASYVLDS------------- 417
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
TG R M Y D S + E GK + + F + L++ G
Sbjct: 418 TGSRHDMDTLALKYL-DHSTIHF-EDIAGKGAKQITFNQIALEQAG-------------- 461
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
Y+A D+ TL+LY++L K+ + + + Y+ P
Sbjct: 462 ---------PYAAEDADITLRLYQALLPKIQQH-----------EGLLAVYRNIELPLVP 501
Query: 608 ILVKMETEGMLVDREYL 624
+L ++E G VDRE L
Sbjct: 502 VLSRIERNGAYVDRELL 518
>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
Length = 980
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S ++ + GRVH S ++ +T TGRLS+ PN+QN P + KIRQAFIA G LI AD
Sbjct: 694 SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMF 790
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P EDP++ K+ N +D VL+ YG++++ F DTM ++ D+ GG ++ L+
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
++ ++ +++ G + +IS F + L K
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
+Y+A D+ TL+L+K LK +L + M Y+ +P L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584
Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
KME G+ +DR+ LS + E A R + H + NVGS QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638
Query: 670 G--GKPNSK 676
G G P K
Sbjct: 639 GKMGLPGGK 647
>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
Length = 1060
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 779 FATEQEAREACDAISALCE-VCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNIN 831
++T+ E E A + E V SL+ LQG+ V G +GRVH +
Sbjct: 734 YSTDAEVLETLAARHPIAELVLEYRSLVK-----LQGTYVDGLAEHIGPDGRVHTTFQQT 788
Query: 832 TE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
TGRLS+ +PNLQN P ++ +R+AF+A PG+ L+ ADY Q+ELR+LAH + +
Sbjct: 789 VAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEG 848
Query: 891 MLDAFKAGGDFHSRTAMNMY 910
+L+AF G D H+RTA ++
Sbjct: 849 LLEAFARGQDVHARTASEIF 868
>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
Length = 1060
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKD 853
+ E + L S + LQ ++ + RVH S ++ T TGRLS+ PNLQN P ++
Sbjct: 755 ILEWRQLSKLKSTYTDALQ-AHADRETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEE 813
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AF+A PGN LI ADY Q+ELR+LAH+A+ + AF+ G D H+ TA M+
Sbjct: 814 GRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMF 870
>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
gi|188023732|gb|EDU61772.1| DNA-directed DNA polymerase [Providencia stuartii ATCC 25827]
Length = 930
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL +S K RVH S + T TGRLS+R PNLQN P
Sbjct: 629 LLEHRSLAKLKSTYTDKLPLM---ISTKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 686 EEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF 744
>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
Length = 944
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PG L+ ADY Q+ELR+
Sbjct: 670 RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRL 729
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + +L+AF+ G D H+RTA ++
Sbjct: 730 LAHVAKIEPLLEAFRLGQDIHARTASEVF 758
>gi|392375299|ref|YP_003207132.1| DNA polymerase I [Candidatus Methylomirabilis oxyfera]
gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [Candidatus Methylomirabilis oxyfera]
Length = 873
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GR+H S N T TGRLS+ PNLQN P + +IRQAF+A G+ L+ ADY Q+EL
Sbjct: 596 SGRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIEL 655
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RILAHL+ ++++ AF AGGD H TA ++
Sbjct: 656 RILAHLSQDQALIAAFIAGGDVHRSTAAEVF 686
>gi|410629495|ref|ZP_11340195.1| DNA polymerase I [Glaciecola arctica BSs20135]
gi|410150980|dbj|GAC17062.1| DNA polymerase I [Glaciecola arctica BSs20135]
Length = 916
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + TGRLS+ PNLQN P ++ ++RQAFIA PG ++ ADY
Sbjct: 635 INARTGRVHTSYHQAIAATGRLSSTDPNLQNIPIRTEEGRRVRQAFIARPGYKIVAADYS 694
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L+AF G D H+ TA ++
Sbjct: 695 QIELRIMAHLSRDKGLLNAFATGQDIHTATASEVF 729
>gi|440758546|ref|ZP_20937710.1| DNA polymerase I [Pantoea agglomerans 299R]
gi|436427720|gb|ELP25393.1| DNA polymerase I [Pantoea agglomerans 299R]
Length = 928
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+ PNLQN P + +IRQAF+A G+
Sbjct: 643 LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFAQGDDIHRATASEVF 741
>gi|393782517|ref|ZP_10370700.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
gi|392672744|gb|EIY66210.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
Length = 935
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 614 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 670
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 671 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 730
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF +G D H+ TA +Y
Sbjct: 731 IDAFLSGYDIHAATAAKVY 749
>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
Length = 968
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + K GRVH + ++ T TGRLS+ PNLQN PA + KIR AFIA G+ L+ AD
Sbjct: 682 SYILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSAD 741
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRILAH A+ ++ +AF G D H+ TA M+
Sbjct: 742 YSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMF 778
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 159/389 (40%), Gaps = 89/389 (22%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLL 417
W+L + K A DTE +D Q +++ FS+ P +A + + D L
Sbjct: 371 WLLEAE-KQGYFAFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHTAGEDGL 423
Query: 418 DGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMA 469
GGR + L P E+ +I K+ N +D V++ Y + + F DTM +
Sbjct: 424 LAGGRIVPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQYDIVMRSFD-DTMLL- 481
Query: 470 RLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
S E G S + V+SE ++ I+ KD+ K
Sbjct: 482 -----SYALEAGISTHGI----DVLSERWLGHKP--------------ITYKDLTYNGK- 517
Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPV 589
KI + A ++ Q Y+A D+ TL+L++ LK +L+
Sbjct: 518 -------KIVSFAQIDLKQAT------LYAAEDADITLRLWQVLKPQLV----------- 553
Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKH 649
+ M Y+ +P EIL +ME G+LVDR+ LS +++ +AA+N + +
Sbjct: 554 -AQRMTKIYERLDRPLIEILARMEERGILVDRQILS---RLSGELAQAALNLEEEI---Y 606
Query: 650 CPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTP 704
+ N+ S QL +LFG G +K+ S + + E + EG P
Sbjct: 607 QLVGERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTL------EELATEGHILP 660
Query: 705 SK---FRNIT-LRSIGVD-LPTEMYTATG 728
K +R + L+S D LP+ + T TG
Sbjct: 661 RKIVDWRQLAKLKSTYTDALPSYILTKTG 689
>gi|347360119|ref|YP_389938.2| DNA polymerase I [Desulfovibrio alaskensis G20]
gi|342906655|gb|ABB40243.2| DNA polymerase I [Desulfovibrio alaskensis G20]
Length = 865
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 5/151 (3%)
Query: 761 GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
G ++ KG AS ++ + + I + E ++ L S ++ PL ++ +
Sbjct: 529 GLKAGSKTKGGQASTSQAVLEKLAGKHPV--IDTILEYRKLEKLRSTYLEPL--PRLAQE 584
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
N R+H + N + T TGRLS+ +PNLQN P ++R+ F A PGN L+ ADY Q+EL
Sbjct: 585 NDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIEL 644
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH++ +++++F D HSRTA +Y
Sbjct: 645 RVLAHVSADPTLIESFTRNEDIHSRTAGLLY 675
>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
Length = 875
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T+QE EA + I + +I L + +I + ++ K+G++H + +T
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ IR+AF+ GN L+ ADY Q+ELR+LA LAN + MLDA
Sbjct: 614 GRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDA 673
Query: 895 FKAGGDFHSRTAMNMY 910
FK G D H +TA ++
Sbjct: 674 FKHGADIHRKTASEVF 689
>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 925
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + T TGRLS+ PNLQN P ++ KIR AFIA PG+ L+ AD
Sbjct: 643 AQINPRTGRVHTSFALALTTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSAD 702
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH+A K ++ AF G D H+ TA ++
Sbjct: 703 YSQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVF 739
>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
Length = 917
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K+GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 632 LPLM---VNAKSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKK 688
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF AG D H TA ++
Sbjct: 689 VLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVF 730
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 110/405 (27%)
Query: 278 RNSEIECFEDGSSYTPPPKLVSFKR--SNQKNPKNDAAEGTGQNKKASENENSEKLEILR 335
R+ IECF + + FKR ++ + K D +G+++K ++ E +++
Sbjct: 272 RDELIECFGE----------MEFKRWLADVLDNKTD----SGKSEKNTDEE------VIK 311
Query: 336 SKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
+ + Y+ + + + +W+ L+ A DTE ++ V I F
Sbjct: 312 QDIQTEYTTIYTHEELD-----LWIDKLANADLI-AIDTETTSLNYMDAKLVG----ISF 361
Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
+I +G A G D LD + + L + P E+P +KKV N +D +
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
N G+K+ G DTM + +++S +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSVA-----------------------------TKHNMD 447
Query: 512 E---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINT 566
+ ++G IS ++I G+ + + + T AP Y+A D+ T
Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQLTFNQIDLETAAP--------------YAAEDADIT 493
Query: 567 LKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS 625
L+L++ L W +L+ +P + + + P ++L +E G+L+D L
Sbjct: 494 LRLHQHL--------WPRLEKEP----ELASVFTDIELPLIQVLSDIERGGVLIDSMMLG 541
Query: 626 EIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
+ ++AR E F K N+ S QL+ L F
Sbjct: 542 QQSGELARTIDELEQKAFEIAGEK-------FNLSSPKQLQVLFF 579
>gi|395791668|ref|ZP_10471124.1| DNA polymerase I [Bartonella alsatica IBS 382]
gi|395407971|gb|EJF74591.1| DNA polymerase I [Bartonella alsatica IBS 382]
Length = 968
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR+AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRKAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 732 SEGHMLLSADYSQIELRILAHIADIAALKEAFAQGQDIHAITASQMF 778
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 127/311 (40%), Gaps = 76/311 (24%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
A DTE +D Q +++ FS+ P +A + + VD L GGGR
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHVEGVDDLWGGGRIAEQIES 435
Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
L P E+ ++ K+ N +D V++ GL + F DTM ++ D+ T
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQQGLMIRSFD-DTMLLSYALDAGVLT--- 491
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
++L+AL+ E ++G I+ KD+ K KIS
Sbjct: 492 HNLDALS-----------------------ERWLGHKPIAYKDLTHNGK--------KIS 520
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ A V+ Q Y+A D+ TL+L++ LK +L+ + M Y+
Sbjct: 521 SFAQVDLKQAT------FYAAEDADITLRLWQILKPQLV------------AQGMTKIYE 562
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P ++L KME G+LVDR+ L R +E F + + N+
Sbjct: 563 RIDRPLIKVLAKMEERGILVDRQIL------LRLSEELEQAAFILEEEIYQLAGEKFNIA 616
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 617 SPKQLGDILFG 627
>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Granulicella tundricola MP5ACTX9]
gi|321162096|gb|ADW67801.1| DNA polymerase I [Granulicella tundricola MP5ACTX9]
Length = 975
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 813 QGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
Q ++S + GR+H + N + T TGRLS+ PNLQN P +IR AFIA PGN L+
Sbjct: 691 QLPSLSDREGRIHTTFNQVGTATGRLSSTNPNLQNIPTRTAIGREIRAAFIAAPGNLLMS 750
Query: 872 ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ADY Q+ELR++AH + +L+A++ G D H+ TA ++
Sbjct: 751 ADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVF 789
>gi|333376898|ref|ZP_08468634.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
22836]
gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
22836]
Length = 933
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ ++ + E + L+S +I LPL V K+G++H S N
Sbjct: 612 YVTSEETLESIKNTHPIVNKILEYRGLKKLLSTYIDALPLL---VEPKDGKIHTSFNQTV 668
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P + +IR++FIA G ADY Q+ELRI+AHL+ SM
Sbjct: 669 TATGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSM 728
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AF +G D H+ TA +Y
Sbjct: 729 VEAFNSGEDIHAATAAKIY 747
>gi|386743146|ref|YP_006216325.1| DNA polymerase I [Providencia stuartii MRSN 2154]
gi|384479839|gb|AFH93634.1| DNA polymerase I [Providencia stuartii MRSN 2154]
Length = 930
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL +S K RVH S + T TGRLS+R PNLQN P
Sbjct: 629 LLEHRSLAKLKSTYTDKLPLM---ISPKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 686 EEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF 744
>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
Length = 889
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIR 858
S+ L S ++ LQ S + + GRVH S N N T TGRLS+ PNLQN P + +IR
Sbjct: 593 SVAKLKSTYVDALQ-SLIHPETGRVHTSFNQNVTATGRLSSSNPNLQNIPIRTPEGKRIR 651
Query: 859 QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AFI G + ADY Q+ELRILAHL+ + +++ FK+G D H RTA ++
Sbjct: 652 EAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFKSGEDIHKRTASEVF 703
>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
Length = 922
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 642 VDPTTGRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +LDAF G D H+ TA ++
Sbjct: 702 QIELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVF 736
>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
Length = 971
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
+NGR+H S ++ +T TGRLS+ PNLQN P ++ IR AF+A G L+ ADY Q+E
Sbjct: 690 ENGRIHTSFSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIE 749
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRILAH+A+ + DAF+ G D H+ TA M+
Sbjct: 750 LRILAHIADIPQLKDAFQNGVDIHAMTASEMF 781
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 76/323 (23%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG-------GG 421
V A DTE +++ + H + +I G A G DLL GG
Sbjct: 378 VMAFDTETSELSAYK----GHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAEALGG 433
Query: 422 RDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
+ ++E ED SI K+ N +D V+ +G+ ++ DTM ++ D+S
Sbjct: 434 QIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQHGIAMTPID-DTMLISYALDASSG 492
Query: 478 TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSA 535
G+ ++ L+ E F+G IS K++ G + K +A
Sbjct: 493 L-AGHGMDELS-----------------------ERFLGHKPISYKELCGSGRSAKPIAA 528
Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
+I + Y++ D+ TL++++ LK +L + +
Sbjct: 529 VEIDRVT--------------EYASEDADVTLRIWQVLKPRL------------AAEGLA 562
Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
Y+ +P +L +ME G++VDR+ LS + +Q A + K A +
Sbjct: 563 HVYERLERPLAPVLARMEQRGIMVDRQILSRLSGNFAQKQAALEDEIAKMAGEE------ 616
Query: 656 MNVGSDTQLRQLLFG--GKPNSK 676
N GS QL ++LFG G P K
Sbjct: 617 FNPGSPKQLGEILFGKLGLPGGK 639
>gi|390437335|ref|ZP_10225873.1| DNA polymerase I [Pantoea agglomerans IG1]
Length = 928
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+ PNLQN P + +IRQAF+A G+
Sbjct: 643 LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 741
>gi|393720358|ref|ZP_10340285.1| DNA polymerase I [Sphingomonas echinoides ATCC 14820]
Length = 917
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
D + + E + L S + LQ + ++ GRVH S ++ +TGRLS+ PNLQN P
Sbjct: 610 DIATKVLEWRQLSKLKSTYTDALQ-AQINPATGRVHTSYSLTGAQTGRLSSTDPNLQNIP 668
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+ +IR AF+A PGN L+ ADY Q+ELR+ AH+A+ ++ +AF +G D HS TA
Sbjct: 669 IRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALREAFASGADIHSMTAQE 728
Query: 909 MY 910
++
Sbjct: 729 LF 730
>gi|393765075|ref|ZP_10353668.1| DNA polymerase I [Methylobacterium sp. GXF4]
gi|392729499|gb|EIZ86771.1| DNA polymerase I [Methylobacterium sp. GXF4]
Length = 1050
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKD 853
+ E + L S + LQ ++ + RVH S ++ T TGRLS+ PNLQN P ++
Sbjct: 745 ILEWRQLSKLKSTYTDALQ-THADRETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEE 803
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AF+A PGN LI ADY Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 804 GRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFADGIDIHAATASAMF 860
>gi|372277221|ref|ZP_09513257.1| DNA polymerase I [Pantoea sp. SL1_M5]
Length = 928
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+ PNLQN P + +IRQAF+A G+
Sbjct: 643 LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 741
>gi|359299477|ref|ZP_09185316.1| DNA polymerase I [Haemophilus [parainfluenzae] CCUG 13788]
gi|402304367|ref|ZP_10823437.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
gi|400377955|gb|EJP30820.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
Length = 959
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A++ L E + L S + LP ++ K GRVH
Sbjct: 635 KGAPSTNEEVL--EELAQKGHIVPKLLMEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 689
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 690 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHL 749
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + M+ AF G D H TA ++
Sbjct: 750 SNDEGMITAFAQGKDIHRATAAEIF 774
>gi|409394912|ref|ZP_11246055.1| DNA polymerase I [Pseudomonas sp. Chol1]
gi|409396448|ref|ZP_11247434.1| DNA polymerase I [Pseudomonas sp. Chol1]
gi|409118929|gb|EKM95319.1| DNA polymerase I [Pseudomonas sp. Chol1]
gi|409120427|gb|EKM96772.1| DNA polymerase I [Pseudomonas sp. Chol1]
Length = 914
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAAPGYQLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L+AF+ G D H TA ++
Sbjct: 693 SQIELRIMAHLAQDAGLLEAFRNGLDVHRATAAEVF 728
>gi|394990045|ref|ZP_10382877.1| DNA polymerase I [Sulfuricella denitrificans skB26]
gi|393790310|dbj|GAB72516.1| DNA polymerase I [Sulfuricella denitrificans skB26]
Length = 906
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + GRVH N TGRL++ PNLQN P ++ +IR+AFIA PG+ +I ADY
Sbjct: 626 VDPQTGRVHTRYNQAVAVTGRLASSDPNLQNIPVRSQEGRRIREAFIATPGSHIIAADYS 685
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ +S+L AF AG D H TA ++
Sbjct: 686 QIELRIMAHLSGDESLLKAFAAGEDIHRATAAEVF 720
>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
Length = 928
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+ PNLQN P + +IRQAF+A G+
Sbjct: 643 LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 741
>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
Length = 932
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 8/105 (7%)
Query: 809 ILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAV-P 865
+LPL + G GR+H S N + T TGRLS+ PNLQN P LE+ R+ IR+AFIA P
Sbjct: 641 LLPL----IDGPEGRIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQGRH-IRKAFIAPEP 695
Query: 866 GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G +L+ ADY Q+ELRILAHL++ S DAF D H+RTA ++
Sbjct: 696 GWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVF 740
>gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
Length = 916
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K+GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 631 LPLM---VNAKSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRK 687
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 688 ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 729
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 83/365 (22%)
Query: 313 AEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHAC 372
AE A+ +E++++ +++ + + Y ++ V+ + + W+ T L+ A
Sbjct: 289 AEVLDNKSTATADEDNDE-AVVKQDIEAKYDTILSVEQLDS-----WIATLSKADLI-AI 341
Query: 373 DTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE-FAPF 431
DTE ++ + V I F++ +G A S +VD + + L+ E P
Sbjct: 342 DTETTSLNYMEAELVG----ISFAVEAGKAAYLP--LSHDYVDAPEQLDKALVFEKLTPL 395
Query: 432 FEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
E+ +IKKV N +D + N G+K+ G DTM + +++S
Sbjct: 396 LENEAIKKVGQNLKYDISIFANAGIKLKGVQFDTMLESYVFNSVA--------------- 440
Query: 492 KVMSEDKKAYQKDMSKGNTDE---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
SK N D+ ++G IS ++I G+ + + + T AP
Sbjct: 441 --------------SKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAP--- 483
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
Y+A D+ TL+L++ L W +L+ P + + + P
Sbjct: 484 -----------YAAEDADITLRLHQHL--------WPRLEKLP----QLASVFTDIELPL 520
Query: 606 GEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
+IL +E +G+L+D L + E++AR ++ + A H + N+ S QL
Sbjct: 521 IDILSTIERQGVLIDSMLLGQQSEELAR-----KIDDLQTKA--HEIAGQPFNLASPKQL 573
Query: 665 RQLLF 669
++L F
Sbjct: 574 QELFF 578
>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
Length = 922
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 637 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 694 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 735
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P ED IKKV N +D VL N G+K+ G DTM + +++S SR G
Sbjct: 395 LEKLRPLLEDAKIKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFNSIASRHDMDGL 454
Query: 483 SLEALTGDRKVMSED 497
+L+ L G + + ED
Sbjct: 455 ALKYL-GHKNIAFED 468
>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
Length = 965
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 818 SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
+G++ RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G LI ADY Q
Sbjct: 685 AGRDDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQ 744
Query: 877 LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ELR+LA +AN ++ +AF+ G D H+RTA ++
Sbjct: 745 IELRLLADVANIPALREAFQLGQDIHARTASEVF 778
>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
Length = 853
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
V GRVH ++ T TGRLS+ PNLQN P KD KIR AFIA G+ LI ADY
Sbjct: 573 QVDANTGRVHTKYSMTATATGRLSSSNPNLQNIPIRSKDGEKIRSAFIAEKGHKLIAADY 632
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL+ILAH+A+ K+ AF G D H TA ++
Sbjct: 633 SQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIF 668
>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
Length = 1009
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ GR+H C +T TGRLS+ PNLQN P ++ IR AFIA PG LI ADY
Sbjct: 724 HIDADTGRIHTCYSLASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADY 783
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ ++ AF G D H+ TA M+
Sbjct: 784 SQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMF 819
>gi|238921711|ref|YP_002935226.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
gi|238871280|gb|ACR70991.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
Length = 930
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
GA ++N ++ E A + + E ++ L S + LPL V+ GRVH S
Sbjct: 606 GAPSTNEEVLVELAEQGYALPQV--ILEYRTLAKLKSTYTDKLPLM---VNPLTGRVHTS 660
Query: 828 LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
+ T TGRLS+ PNLQN P + +IRQAFIA G+ ++ ADY Q+ELRI+AHL+
Sbjct: 661 YHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLS 720
Query: 887 NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
K +L AF AG D H TA ++ AV Q
Sbjct: 721 GDKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQ 755
>gi|336309600|ref|ZP_08564584.1| DNA polymerase I [Shewanella sp. HN-41]
gi|335866911|gb|EGM71853.1| DNA polymerase I [Shewanella sp. HN-41]
Length = 920
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 635 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 691
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 692 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 733
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P ED ++KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 393 LAKLRPILEDANLKKVGQNLKYDMSILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 452
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + GF +DI G+ + + + A
Sbjct: 453 ALKYL--------------------GHKNIGF------EDIAGKGAKQLTFNQIPLENAA 486
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K S+F E
Sbjct: 487 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TEIE 521
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + E++AR E + K N+ S
Sbjct: 522 LPLIQVLSDIERQGVLIDSMLLGQQSEELARKIDELESKAYDIAGEK-------FNLSSP 574
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 575 KQLQVLFFEKLGYPITKKTPKGAP 598
>gi|340502103|gb|EGR28820.1| hypothetical protein IMG5_168560 [Ichthyophthirius multifiliis]
Length = 201
Score = 93.2 bits (230), Expect = 6e-16, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 10/137 (7%)
Query: 366 KHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLL 425
K HA DTE ID+K ET + G++IC ++ G + DFG +++D G + L+
Sbjct: 5 KRQSHAWDTETIDIDLKTETLLGKGKIICAFVFCGQDLDFG-----LFIDNF-GQNKGLI 58
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
N F + ED + KK+WHNY FD H+L N+ + V GF TMHMARL YSL
Sbjct: 59 NIFQDYLEDYNQKKIWHNYGFDRHILYNHNINVQGFGGVTMHMARLLAQYPLE---YSLS 115
Query: 486 ALTGDRKV-MSEDKKAY 501
+T + +V + ++KK Y
Sbjct: 116 VITKNLQVQIQQNKKEY 132
>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
Length = 831
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL G V + GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRKAFVAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 KDIHTQTASWMFGVPLEAVDPRMRRAAKT 663
>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
Length = 934
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ GRVH S L TGR S+ PNLQN P ++ +IR+AF+A PGN L+ DY
Sbjct: 652 HIDPDTGRVHTSYLQTGASTGRFSSSDPNLQNIPVRSEEGRRIREAFVAAPGNRLVSLDY 711
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A +++ AF+ G D H+ TA M+
Sbjct: 712 SQIELRILAHVAGIETLKQAFRDGHDIHAMTASEMF 747
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 128/335 (38%), Gaps = 101/335 (30%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC-IWVDLL 417
W+ T + + V A DTE ++ Q +++ S+ + P G++C I V
Sbjct: 339 WIATIRAQGYV-AFDTETTSLNEMQ------ADLVGISLATAP------GRACYIPVAHK 385
Query: 418 DGGGRDL----------------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
DG DL LN P ED +I K+ N +D +L +G+ V+
Sbjct: 386 DGAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAHGITVAPI 445
Query: 462 HADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM--GKIS 519
DTM M+ + G+ ++ L+ E ++ I
Sbjct: 446 D-DTMLMSYALHAGLH---GHGMDTLS-----------------------ERYLNHSPIP 478
Query: 520 MKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLE 579
++ + G G A PV E + Y+A D+ TL+L+ +LK +L
Sbjct: 479 IRSLLG------SGKAAVTFDRVPVAE--------AVKYAAEDADITLRLWLTLKPQLHR 524
Query: 580 MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAE 634
+ Y+ +P +L +ME +G+LVDR+ L + +K+A E
Sbjct: 525 ------------AQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSGKFAQKMAGLE 572
Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
E H + NVGS QL ++LF
Sbjct: 573 SEI-----------HALARRSFNVGSPKQLGEILF 596
>gi|417843781|ref|ZP_12489847.1| DNA polymerase I [Haemophilus haemolyticus M21127]
gi|341948529|gb|EGT75155.1| DNA polymerase I [Haemophilus haemolyticus M21127]
Length = 935
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +S+++AF G D H TA ++
Sbjct: 726 SGDQSLINAFSQGKDIHRSTAAEIF 750
>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
Length = 932
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVF 745
>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
Length = 937
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S ++ +GRVH S + T TGRLS+R PNLQN P ++ +IRQAFIA PG +I AD
Sbjct: 638 SMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAAD 697
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRI+AHL+ ++ AF A D H TA ++
Sbjct: 698 YSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVF 734
>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
Length = 962
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ EQ A++ L E ++ L S + LP ++ GRVH
Sbjct: 638 KGAPSTNEEVL--EQLAQQGHLVPKLLSEHRALSKLKSTYTDKLP---KMINQHTGRVHT 692
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 693 SYHQAVTTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 752
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
AN + M+ AF G D H TA ++
Sbjct: 753 ANDEGMITAFANGQDIHQATAAEIF 777
>gi|357030774|ref|ZP_09092718.1| DNA polymerase I [Gluconobacter morbifer G707]
gi|356415468|gb|EHH69111.1| DNA polymerase I [Gluconobacter morbifer G707]
Length = 924
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PG L+ ADY Q+ELR+
Sbjct: 650 RVHTSYQMAVTTTGRLSSNEPNLQNIPIRTEEGGRIRKAFVAAPGYVLLSADYSQIELRL 709
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + +L+AF+ G D H+RTA ++
Sbjct: 710 LAHVAKIEPLLEAFRLGQDIHARTASEVF 738
>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
Length = 932
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPISG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVF 745
>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
Length = 921
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 636 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 693 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 734
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P EDP +KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + IS ++I G+ + + + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K +MF E
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + +++AR ++ + A + N+GS
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599
>gi|339000058|ref|ZP_08638681.1| DNA polymerase I [Halomonas sp. TD01]
gi|338763114|gb|EGP18123.1| DNA polymerase I [Halomonas sp. TD01]
Length = 924
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ KIRQAF+A PG ++ ADY Q+EL
Sbjct: 648 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIEL 707
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +L+AF G D H+ TA ++
Sbjct: 708 RIMAHLSEDKGLLNAFAEGRDIHTATAAEVF 738
>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
Length = 935
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 650 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 706
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 707 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 748
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P EDP +KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 408 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 467
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + IS ++I G+ + + + T A
Sbjct: 468 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 501
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K +MF E
Sbjct: 502 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 536
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + +++AR ++ + A + N+GS
Sbjct: 537 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 589
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 590 KQLQVLFFEKLGYPITKKTPKGAP 613
>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
Length = 922
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 637 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 694 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 735
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P ED +KKV N +D VL N G+++ G DTM + +++S SR G
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLKGVVFDTMLESYVFNSVASRHDMDGL 454
Query: 483 SLEALTGDRKVMSED 497
+L+ L G + + ED
Sbjct: 455 ALKYL-GHKNIAFED 468
>gi|410943843|ref|ZP_11375584.1| DNA polymerase I [Gluconobacter frateurii NBRC 101659]
Length = 930
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ IR+AF+A PG+ L+ ADY Q+ELR+
Sbjct: 656 RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVAAPGHVLVSADYSQIELRL 715
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + +L+AF G D H+RTA ++
Sbjct: 716 LAHVAKIEPLLEAFHLGQDIHARTASEVF 744
>gi|373947471|ref|ZP_09607432.1| DNA polymerase I [Shewanella baltica OS183]
gi|386326680|ref|YP_006022797.1| DNA polymerase I [Shewanella baltica BA175]
gi|333820825|gb|AEG13491.1| DNA polymerase I [Shewanella baltica BA175]
gi|373884071|gb|EHQ12963.1| DNA polymerase I [Shewanella baltica OS183]
Length = 921
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 636 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 693 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 734
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P EDP +KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + IS ++I G+ + + + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K +MF E
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---IEVE 522
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + +++AR ++ + A + N+GS
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599
>gi|398382219|ref|ZP_10540316.1| DNA polymerase I [Rhizobium sp. AP16]
gi|397717910|gb|EJK78507.1| DNA polymerase I [Rhizobium sp. AP16]
Length = 1000
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+AN + AF G D H+ TA M+
Sbjct: 780 LAHVANIPQLEQAFADGVDIHAMTASEMF 808
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 60/251 (23%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ K+ N +D +++ YG++ GF DTM ++ + D G
Sbjct: 465 RDALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG 523
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+++L+ E ++G I+ KD+ G +GK +
Sbjct: 524 --MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSN 549
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R +Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 550 ITFDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLATVYE 592
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L ME G+ +DR+ LS R E A R + + N+G
Sbjct: 593 RLERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 646
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 647 SPKQLGDILFG 657
>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
Length = 1043
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ +GRVH S + T TGRLS+ PNLQN P + KIR+AFIA PG L+ ADY
Sbjct: 759 INPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPGRKLVSADYS 818
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ KS+ +AF D H+ TA M+
Sbjct: 819 QIELRLLAHIADIKSLKNAFAENLDIHAMTASEMF 853
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 399 SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
SG D GK + L G +L P EDPSI K+ N +D VL+ +G+++
Sbjct: 491 SGEGQDLFEGKGLLPGQLPIG---VVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEM 547
Query: 459 SGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
DT+ ++ + D+ G TD G M +
Sbjct: 548 RPLD-DTLLLSYVLDA---------------------------------GLTDHG-MDVL 572
Query: 519 SMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL 578
S K + G + + AG T R + Y+A D+ TL+L++ LK +L
Sbjct: 573 SEKHL-GHKPIPFSAVAGSGRTFI---GFARVAIDKATEYAAEDADVTLRLWRVLKPRL- 627
Query: 579 EMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
P + M Y+ +P ++L +ME G+ +D L R + A
Sbjct: 628 -----------PAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLG------RLSSDFA 670
Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
+ R A + + N+GS QL +LFG G P +K
Sbjct: 671 QDMARYEAEIYELAGEKFNLGSPKQLGDILFGKLGLPGAK 710
>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
Length = 922
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 637 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 694 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 735
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P ED +KKV N +D VL N G+++ G DTM + +++S SR G
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLQGVVFDTMLESYVFNSVASRHDMDGL 454
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G + + ED GK + + F + +L+ T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQIQLE---------TAA 488
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K S+F +
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKETELASVF---TDIE 523
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P +IL +E +G+ +D L + +++AR E + K N+ S
Sbjct: 524 LPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKAYDIAGEK-------FNLSSP 576
Query: 662 TQLRQLLF 669
QL+ L F
Sbjct: 577 KQLQVLFF 584
>gi|424916040|ref|ZP_18339404.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392852216|gb|EJB04737.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 999
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY
Sbjct: 713 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF+ G D H+ TA M+
Sbjct: 773 QIELRVLAHVADIPQLTKAFEDGVDIHAMTASEMF 807
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED ++ KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656
>gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
Length = 978
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRILAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
gi|386338986|ref|YP_006035352.1| DNA polymerase I [Shewanella baltica OS117]
gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
gi|334861387|gb|AEH11858.1| DNA polymerase I [Shewanella baltica OS117]
Length = 921
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 636 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 693 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 734
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P EDP +KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + IS ++I G+ + + + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K +MF E
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + +++AR ++ + A + N+GS
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599
>gi|417925421|ref|ZP_12568840.1| DNA-directed DNA polymerase [Finegoldia magna SY403409CC001050417]
gi|341591047|gb|EGS34255.1| DNA-directed DNA polymerase [Finegoldia magna SY403409CC001050417]
Length = 875
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T+QE EA + I + +I L + +I + ++ K+G++H + +T
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ IR+AF+ GN L+ ADY Q+ELR+LA LAN + MLDA
Sbjct: 614 GRISSTNPNLQNIPIRTEEGRLIRKAFVPRGGNVLLDADYSQIELRVLADLANDEVMLDA 673
Query: 895 FKAGGDFHSRTAMNMY 910
FK G D H +TA ++
Sbjct: 674 FKHGADIHRKTASEVF 689
>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
Length = 874
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
+ AL E ++ L S ++ PL + G +GR+ + N + T TGRLS+ PNLQN P
Sbjct: 567 VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R F A G LI ADY Q+ELR+LAHL+ +++L AF+ G D H+RTA ++
Sbjct: 625 GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684
>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
Length = 994
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRILAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
Length = 921
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
Q+ R + ++ + E + LI +I L ++ K G +H S N T TGRLS+
Sbjct: 608 QQLRNKHEIVADILEHRGLKKLIGTYIDALPKL-INPKTGHIHTSFNQTITATGRLSSSD 666
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P +D +IR+AFI PG ADY Q+ELR++AHL+ M+ F G D
Sbjct: 667 PNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIKVFSEGKDL 726
Query: 902 HSRTAMNMY 910
H+ TA N+Y
Sbjct: 727 HAATAANIY 735
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++N F P +E+P I KV N +D VL NYG+++ G DTM
Sbjct: 394 IVNIFKPAYENPEILKVGQNLKYDLEVLRNYGIELKGKMWDTM 436
>gi|410610880|ref|ZP_11321985.1| DNA polymerase I [Glaciecola psychrophila 170]
gi|410169591|dbj|GAC35874.1| DNA polymerase I [Glaciecola psychrophila 170]
Length = 916
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAFIA G ++ ADY
Sbjct: 635 INARTGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEEGRRVRQAFIAREGYKIVAADYS 694
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL++ K +L+AF G D H+ TA ++
Sbjct: 695 QIELRIMAHLSSDKGLLNAFATGQDIHTATASEVF 729
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 59/248 (23%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P E+P IKKV + +D +VL NY + + G DTM + Y
Sbjct: 388 VLATLKPLLENPDIKKVGQHLKYDKNVLANYDINLQGIAFDTMLES------------YV 435
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
L ++T + DM + E ++G+ I +DI G+ + + +
Sbjct: 436 LNSVTT------------RHDMD--SLAEKYLGQSTIHFEDIAGKGVKQVTFNQIPLDKA 481
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
+P Y+A D+ TL+L+K + +KL E K + + ++E
Sbjct: 482 SP--------------YAAEDADITLRLHKVIWRKLSE-----------EKDLVNVFKEI 516
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P +L KME G+L+D +K+A+ Q+ AV H + N+GS
Sbjct: 517 ELPLSPVLAKMEQFGVLIDS------QKLAQQSQDLAVRILELEKEVHTLAGEEFNLGSP 570
Query: 662 TQLRQLLF 669
QL+++L+
Sbjct: 571 KQLQEILY 578
>gi|222084398|ref|YP_002542927.1| DNA polymerase I [Agrobacterium radiobacter K84]
gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
Length = 1000
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+AN + AF G D H+ TA M+
Sbjct: 780 LAHVANIPQLEQAFADGVDIHAMTASEMF 808
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 145/369 (39%), Gaps = 93/369 (25%)
Query: 328 SEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
+E ++ +++ ASF +S + + +V + W+ + +V A DTE +DV
Sbjct: 356 TEPADLTKARAASFATAPIDHSKYVTIRDVGTLDR--WIADARETGIV-AFDTETTSLDV 412
Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------RD 423
Q E++ FS+ + +G S +V L G RD
Sbjct: 413 MQ------AEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRD 466
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
L ED S+ K+ N +D +++ YG++ GF DTM ++ + D G
Sbjct: 467 ALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG-- 523
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
+++L+ E ++G I+ KD+ G +GK +
Sbjct: 524 MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNIT 551
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
+ ++ R +Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 552 FDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLATVYERL 594
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P +L ME G+ +DR+ LS R E A R + + N+GS
Sbjct: 595 ERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIGSP 648
Query: 662 TQLRQLLFG 670
QL +LFG
Sbjct: 649 KQLGDILFG 657
>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
Length = 928
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ R+H S + T TGRLS+ PNLQN P ++ KIRQAF+A PG ++ ADY
Sbjct: 648 VNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYS 707
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H+ TA ++ +AV Q
Sbjct: 708 QIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQ 753
>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
Length = 941
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ + GRVH S +I TGRLS+ PNLQN P + KIR+
Sbjct: 645 LSKLKSTYTDALQ-THINAETGRVHTSYSITGANTGRLSSTDPNLQNIPIRTDEGRKIRE 703
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA G L+ DY Q+ELRILAH+AN ++ AF+ G D H+ TA M+
Sbjct: 704 AFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMF 754
>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
Length = 936
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S N I TGRLS+ PNLQN P ++ +IR+AF+A PG+ + ADY
Sbjct: 655 VNPRTGRIHTSYNQIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAADYS 714
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH++ ++++ AF+ G D H+ TA ++
Sbjct: 715 QIELRVLAHISGDENLIAAFQQGLDIHAATASRLF 749
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 56/247 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D++ P F DP+I K HN FD VL G++V+G DTM A
Sbjct: 404 DVVAALGPLFADPNIPKFAHNAKFDAEVLAGVGIQVAGLAFDTMIAA------------- 450
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
A+ G R+ + +D Y+ + + T +++D+ GR GS
Sbjct: 451 ---AMLGKRQGL-KDLAFYELKLPEPPT--------TIEDLIGR------GSK------- 485
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
IS++A + L ++ L G+ ++ D Y
Sbjct: 486 ------------QISFAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTALRDLYYRVE 533
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P ++L ME G+L+D EYL E+ K R Q A + +A P N+ S
Sbjct: 534 LPLIDVLTDMELTGILLDHEYLRELGK--RFAQRIAELTEQIYAKAGGP----FNINSGQ 587
Query: 663 QLRQLLF 669
QL ++LF
Sbjct: 588 QLNEVLF 594
>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
Length = 967
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ KIR+AF+A PG+ LI AD
Sbjct: 681 AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 740
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 741 YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF 777
>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
Length = 922
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P + +IRQAFIA G
Sbjct: 637 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRK 693
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L+AF G D H TA ++
Sbjct: 694 ILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVF 735
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P ED +KKV N +D VL N G+ + G DTM + +++S SR G
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGL 454
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G + + ED GK + + F + L+ T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQISLE---------TAA 488
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K S+F +
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TDIE 523
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P IL +E +G+ +D L + E++AR E + K N+ S
Sbjct: 524 LPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEK-------FNLSSP 576
Query: 662 TQLRQLLF 669
QL+ L F
Sbjct: 577 KQLQVLFF 584
>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
Length = 982
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ KIR+AF+A PG+ LI AD
Sbjct: 696 AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 755
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 756 YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF 792
>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
Length = 932
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF AG D H TA ++
Sbjct: 704 IMAADYSQIELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVF 745
>gi|389811664|ref|ZP_10206203.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
gi|388440171|gb|EIL96577.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
Length = 915
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNINT-ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S V+ + GRVH S + + TGR+S+ PNLQN P ++ +IRQAFIA PG ++ AD
Sbjct: 634 SIVNPRTGRVHTSYHQGSVATGRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWRVLAAD 693
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRI+AHL+ + +L AF+ GGD H TA ++
Sbjct: 694 YSQIELRIMAHLSGDEGLLKAFREGGDVHRATAAEVF 730
>gi|395491278|ref|ZP_10422857.1| DNA polymerase I [Sphingomonas sp. PAMC 26617]
Length = 918
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
D + + E + L S + LQ + ++ GRVH S ++ +TGRLS+ PNLQN P
Sbjct: 611 DMATKVLEWRQLSKLKSTYTDALQ-AQINPATGRVHTSYSLTGAQTGRLSSTDPNLQNIP 669
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+ +IR AF+A PGN L+ ADY Q+ELR+ AH+A+ + +AF +G D HS TA
Sbjct: 670 IRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPQLREAFASGADIHSLTAQE 729
Query: 909 MY 910
++
Sbjct: 730 LF 731
>gi|346991914|ref|ZP_08859986.1| DNA polymerase I [Ruegeria sp. TW15]
Length = 933
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 637 LSKLKSTYTDALQ-THINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRE 695
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA PGN ++ DY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 696 AFIAEPGNVMVSLDYSQIELRILAHIADISTLKQAFSDGLDIHAMTASEMF 746
>gi|384124487|ref|YP_005507101.1| DNA polymerase I, partial [Yersinia pestis D182038]
gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
Length = 750
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 465 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 521
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 522 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 574
>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
Length = 980
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PN+QN P + KIR AF+A PGN LI ADY Q+ELR+
Sbjct: 702 RVHTSFAMAATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRV 761
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+AN + AF G D H+ TA M+
Sbjct: 762 LAHVANIPQLTQAFADGVDIHAMTASEMF 790
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 69/264 (26%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
R L+E E+P++ K+ N +D V+ + +++ F DTM ++ + D+ +GG
Sbjct: 448 RAALDELKALLEEPAVLKIGQNLKYDMLVMAQHNIEIKSFD-DTMLLSYVLDAG---QGG 503
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++AL+ E ++G I KD+ G K SA +
Sbjct: 504 HGMDALS-----------------------ERWLGHKTIGYKDVTGSGK-----SAIPFA 535
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+A + +Y+A D+ TL+L+ +LK +L+ + M Y+
Sbjct: 536 QVA---------IDKATAYAAEDAEVTLRLWHALKVRLVS------------EGMTSVYE 574
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L++ME G+ VDR+ LS + A ++ A ++ NVG
Sbjct: 575 RLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAEIQELAGEN------FNVG 628
Query: 660 SDTQLRQLLFGGKPNSKDDSESLP 683
S QL ++LF D SLP
Sbjct: 629 SPKQLGEILF--------DKMSLP 644
>gi|345888471|ref|ZP_08839555.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
gi|345040665|gb|EGW44901.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
Length = 874
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
+ AL E ++ L S ++ PL + G +GR+ + N + T TGRLS+ PNLQN P
Sbjct: 567 VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R F A G LI ADY Q+ELR+LAHL+ +++L AF+ G D H+RTA ++
Sbjct: 625 GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684
>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
Length = 936
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ K RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY
Sbjct: 656 IHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 716 QIELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVF 750
>gi|395785269|ref|ZP_10465001.1| DNA polymerase I [Bartonella tamiae Th239]
gi|423717832|ref|ZP_17692022.1| DNA polymerase I [Bartonella tamiae Th307]
gi|395424816|gb|EJF90987.1| DNA polymerase I [Bartonella tamiae Th239]
gi|395427232|gb|EJF93348.1| DNA polymerase I [Bartonella tamiae Th307]
Length = 978
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH + ++ T TGRLS+ PNLQN P K+ KIR AF+A P SL+ ADY Q+EL
Sbjct: 698 TGRVHTNYSMAATSTGRLSSSEPNLQNIPIRTKEGRKIRAAFVAAPHYSLLSADYSQIEL 757
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+A+ K++ AF G D H+ TA M+
Sbjct: 758 RVLAHIADIKALKKAFDEGLDIHAMTASEMF 788
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 130/318 (40%), Gaps = 90/318 (28%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGGGR-- 422
A DTE +D Q E++ FS+ P + GK+ DLL G GR
Sbjct: 392 AFDTETTSLDPMQ------AELVGFSLALRPGKAAYIPLNHVKGKN----DLL-GNGRLE 440
Query: 423 ------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
L P E+ +I K+ N +D V++ YG+++ F DTM ++ + D+
Sbjct: 441 AQITVEKALKFIKPLLENTAILKIAQNMKYDWLVMKQYGIEIRSFD-DTMLLSYVLDAGT 499
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
T G ++AL+ ++ + Y++ G T IS ++
Sbjct: 500 LTHG---MDALS--QRWLGHKPITYKELTGSGKT------AISFAEV------------- 535
Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
+ E Y+A D+ TL+L++ LK +L+ K +
Sbjct: 536 --------------DLEKATHYAAEDADVTLRLWQVLKPQLV------------AKGLSR 569
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLS----EIEKVARAEQEAAVNRFRKWASKHCPD 652
Y+ +P E+L +ME G+LVDR+ LS E+ + A AE++ +
Sbjct: 570 VYERLERPLVEVLARMEQRGILVDRQVLSQLSGELAQSAAAEEDEI----------YTLA 619
Query: 653 AKYMNVGSDTQLRQLLFG 670
+ N+GS QL +LFG
Sbjct: 620 GEKFNIGSPKQLGDILFG 637
>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
Length = 830
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 757 LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
L G TE+T + A+ ++ REA + + E + L S +I PL
Sbjct: 498 LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V K GR+H N T TGRLS+ PNLQN P +IR+AFIA G+ L+ DY
Sbjct: 551 VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAHL+ ++++ F+ G D H+ TA M+
Sbjct: 611 QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF 645
>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
Length = 937
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E+ R+ + E + L S + LQ V+ GRVH S + + +TGRLS+
Sbjct: 622 ERLERDGVPIARKILEWRQLAKLKSTYTDALQ-EQVNATTGRVHTSYSLVGAQTGRLSST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR AFIA PG+ LI ADY Q+ELR+ AH+A+ + +AF G D
Sbjct: 681 DPNLQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDD 740
Query: 901 FHSRTAMNMY 910
H+ TA+ ++
Sbjct: 741 IHAATAIELF 750
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ + H+V A DTE A +D G ++ S+ +G GK+C ++ L
Sbjct: 347 WIADARAAHVV-AVDTETASLDSVT------GRLVGVSLSTG------AGKAC-YIPLGH 392
Query: 419 GGGR------------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
GG D L F D ++ KV HN +D VL +G+ V+ + DT+
Sbjct: 393 GGTDMFAEKPEQIAMGDALERLGALFADDAVLKVGHNLKYDIGVLAQHGVTVAPYD-DTL 451
Query: 467 HMARLWDSSRRTEGGYSLEALTGDRKVMS 495
M+ D+ + G L L D +S
Sbjct: 452 LMSFALDAGKHQHGLDELAKLHLDHVCLS 480
>gi|420155047|ref|ZP_14661917.1| DNA-directed DNA polymerase [Clostridium sp. MSTE9]
gi|394759784|gb|EJF42461.1| DNA-directed DNA polymerase [Clostridium sp. MSTE9]
Length = 860
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V G++GR+H S N T TGR+S+ PNLQN P + ++R+ FIA PG L+ ADY
Sbjct: 579 VIGQDGRIHSSFNQTETRTGRISSTEPNLQNIPVRTEQGRELRRFFIARPGWVLVDADYS 638
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ K+M++AF+ D H TA ++
Sbjct: 639 QIELRVLAHVADDKNMIEAFRENADIHRSTAAQVF 673
>gi|453329342|dbj|GAC88534.1| DNA polymerase I [Gluconobacter thailandicus NBRC 3255]
Length = 929
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ IR+AF+A PG L+ ADY Q+ELR+
Sbjct: 655 RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVAAPGRVLVSADYSQIELRL 714
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + +L+AF G D H+RTA ++
Sbjct: 715 LAHVAKIEPLLEAFHLGQDIHARTASEVF 743
>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451967432|ref|ZP_21920674.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451313753|dbj|GAC66036.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
Length = 930
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
VS GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G+ ++ ADY
Sbjct: 650 VSPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ + +L+AF AG D H TA ++ AV Q
Sbjct: 710 QIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQ 755
>gi|442611897|ref|ZP_21026597.1| DNA polymerase I [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441746367|emb|CCQ12659.1| DNA polymerase I [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 915
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A G+
Sbjct: 630 LPLM---VNEHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFVAAKGHQ 686
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 687 IVAADYSQIELRIMAHLSQDKGLLNAFAQGQDVHSATAAEVF 728
>gi|410696876|gb|AFV75944.1| DNA polymerase I [Thermus oshimai JL-2]
Length = 830
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 757 LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
L G TE+T + A+ ++ REA + + E + L S +I PL
Sbjct: 498 LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V K GR+H N T TGRLS+ PNLQN P +IR+AFIA G+ L+ DY
Sbjct: 551 VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAHL+ ++++ F+ G D H+ TA M+
Sbjct: 611 QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF 645
>gi|350560184|ref|ZP_08929024.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782452|gb|EGZ36735.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 902
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + GRVH S + TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 622 VHPETGRVHTSYHQAVAATGRLSSSDPNLQNIPVRTDEGRRIRQAFIAEPGQLLLAADYS 681
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L+AF AG D H TA ++
Sbjct: 682 QIELRIMAHLSQDRGLLEAFAAGEDIHRATAAEVF 716
>gi|347760865|ref|YP_004868426.1| DNA polymerase I [Gluconacetobacter xylinus NBRC 3288]
gi|347579835|dbj|BAK84056.1| DNA polymerase I [Gluconacetobacter xylinus NBRC 3288]
Length = 924
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PGN L+ AD
Sbjct: 642 NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGNVLVSAD 701
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LA +A+ ++ +AF+ G D H+RTA ++
Sbjct: 702 YSQIELRLLADVADIPALREAFELGQDIHARTASEVF 738
>gi|348027482|ref|YP_004870168.1| DNA polymerase I [Glaciecola nitratireducens FR1064]
gi|347944825|gb|AEP28175.1| DNA polymerase I [Glaciecola nitratireducens FR1064]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P + ++RQAFIA PG ++ ADY
Sbjct: 651 IHHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRTAEGRQVRQAFIARPGYKVVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K ++ AF G D HS TA ++
Sbjct: 711 QIELRIMAHLSKDKGLVSAFSEGKDIHSATAAEVF 745
>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
Length = 940
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +V+ + GRVH S +I +TGRL++ PNLQN P + +IR+AF+A PG
Sbjct: 655 LPL---HVNPETGRVHTSYSIAGAQTGRLASTDPNLQNIPVRTDEGRRIREAFVAAPGMR 711
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ DY Q+ELRILAH+A ++ AF+ G D H+ TA M+
Sbjct: 712 LVSLDYSQIELRILAHVAQIPALQQAFRDGIDIHAMTASQMF 753
>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
Length = 892
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S N T TGRLS+ PNLQN P ++ IR+AFIA PG+ ++ ADY
Sbjct: 612 VAPATGRVHTSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYS 671
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA---MNMYPHI 913
Q+ELR+LAHL+ + + +AF AG D H RTA M+P +
Sbjct: 672 QIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFGMFPEL 712
>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
Length = 923
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++G+ GRVH S + N TGRLS+ PNLQN P ++ +IRQAF+A G
Sbjct: 638 LPLM---INGRTGRVHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKR 694
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF G D H TA ++
Sbjct: 695 ILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVF 736
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 122/307 (39%), Gaps = 76/307 (24%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
A DTE +D Q V + F+I +G A G G L L
Sbjct: 347 AVDTETTSLDYMQAELVG----LSFAIEAGKAAYLPLGHDY------PGAPSQLPREATL 396
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGYS 483
+ P E+P IKKV N +D VL N G+++ G DTM + +++S SR G +
Sbjct: 397 AKLKPLLENPDIKKVGQNLKYDMSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLA 456
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
L+ L G + + E+ GK + + F + L++ AP
Sbjct: 457 LKYL-GHKNISFEE----------------IAGKGAKQLTFNQIALEQ---------AAP 490
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L++ L W K +S+F E
Sbjct: 491 --------------YAAEDADITLRLHQHL--------WPRLSKEEGLESVF---TELEL 525
Query: 604 PFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P E+L +E G+L+D L + E++AR ++ + A H + N+ S
Sbjct: 526 PLIEVLSDIERRGVLIDSMLLGQQSEELAR-----KIDELEQHA--HEIAGEPFNLSSTK 578
Query: 663 QLRQLLF 669
QL++L F
Sbjct: 579 QLQELFF 585
>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
Length = 920
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S + TGRLS+ PNLQN P + KIRQAFIA PG +++ ADY
Sbjct: 640 VNPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYS 699
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL++ +S++DAF G D H TA
Sbjct: 700 QIELRIMAHLSDDESLIDAFARGLDIHRATA 730
>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|414341221|ref|YP_006982742.1| DNA polymerase I [Gluconobacter oxydans H24]
gi|411026556|gb|AFV99810.1| DNA polymerase I [Gluconobacter oxydans H24]
Length = 930
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ IR+AF+A PG L+ ADY Q+ELR+
Sbjct: 656 RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVATPGRVLVSADYSQIELRL 715
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + +L+AF G D H+RTA ++
Sbjct: 716 LAHVAKIEPLLEAFHLGQDIHARTASEVF 744
>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella inopinata BO1]
gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella inopinata BO1]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 128/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
V A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ + S QL +LFG G P +
Sbjct: 620 --GEKFTISSPKQLGDILFGKMGLPGA 644
>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM10+]
gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
gi|384120608|ref|YP_005503228.1| DNA polymerase I [Yersinia pestis D106004]
gi|384138000|ref|YP_005520702.1| DNA polymerase I [Yersinia pestis A1122]
gi|384416569|ref|YP_005625931.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420544025|ref|ZP_15042305.1| DNA polymerase I [Yersinia pestis PY-01]
gi|420549705|ref|ZP_15047375.1| DNA polymerase I [Yersinia pestis PY-02]
gi|420560395|ref|ZP_15056779.1| DNA polymerase I [Yersinia pestis PY-04]
gi|420565839|ref|ZP_15061678.1| DNA polymerase I [Yersinia pestis PY-05]
gi|420571301|ref|ZP_15066649.1| DNA polymerase I [Yersinia pestis PY-06]
gi|420576581|ref|ZP_15071425.1| DNA polymerase I [Yersinia pestis PY-07]
gi|420582034|ref|ZP_15076380.1| DNA polymerase I [Yersinia pestis PY-08]
gi|420592458|ref|ZP_15085783.1| DNA polymerase I [Yersinia pestis PY-09]
gi|420597790|ref|ZP_15090577.1| DNA polymerase I [Yersinia pestis PY-10]
gi|420598026|ref|ZP_15090785.1| DNA polymerase I [Yersinia pestis PY-11]
gi|420603500|ref|ZP_15095645.1| DNA polymerase I [Yersinia pestis PY-12]
gi|420608858|ref|ZP_15100507.1| DNA polymerase I [Yersinia pestis PY-13]
gi|420614435|ref|ZP_15105485.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|420619720|ref|ZP_15110092.1| DNA polymerase I [Yersinia pestis PY-15]
gi|420624853|ref|ZP_15114736.1| DNA polymerase I [Yersinia pestis PY-16]
gi|420634939|ref|ZP_15123833.1| DNA polymerase I [Yersinia pestis PY-19]
gi|420635129|ref|ZP_15123996.1| DNA polymerase I [Yersinia pestis PY-25]
gi|420640746|ref|ZP_15129066.1| DNA polymerase I [Yersinia pestis PY-29]
gi|420650972|ref|ZP_15138348.1| DNA polymerase I [Yersinia pestis PY-32]
gi|420651609|ref|ZP_15138902.1| DNA polymerase I [Yersinia pestis PY-34]
gi|420656953|ref|ZP_15143729.1| DNA polymerase I [Yersinia pestis PY-36]
gi|420662127|ref|ZP_15148347.1| DNA polymerase I [Yersinia pestis PY-42]
gi|420672410|ref|ZP_15157672.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|420677790|ref|ZP_15162571.1| DNA polymerase I [Yersinia pestis PY-46]
gi|420678137|ref|ZP_15162874.1| DNA polymerase I [Yersinia pestis PY-47]
gi|420683438|ref|ZP_15167639.1| DNA polymerase I [Yersinia pestis PY-48]
gi|420693865|ref|ZP_15176847.1| DNA polymerase I [Yersinia pestis PY-52]
gi|420694173|ref|ZP_15177119.1| DNA polymerase I [Yersinia pestis PY-53]
gi|420705727|ref|ZP_15186696.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|420710681|ref|ZP_15191215.1| DNA polymerase I [Yersinia pestis PY-55]
gi|420716203|ref|ZP_15196106.1| DNA polymerase I [Yersinia pestis PY-56]
gi|420716471|ref|ZP_15196341.1| DNA polymerase I [Yersinia pestis PY-58]
gi|420722124|ref|ZP_15201148.1| DNA polymerase I [Yersinia pestis PY-59]
gi|420727693|ref|ZP_15206091.1| DNA polymerase I [Yersinia pestis PY-60]
gi|420737860|ref|ZP_15215275.1| DNA polymerase I [Yersinia pestis PY-61]
gi|420738255|ref|ZP_15215618.1| DNA polymerase I [Yersinia pestis PY-63]
gi|420743356|ref|ZP_15220211.1| DNA polymerase I [Yersinia pestis PY-64]
gi|420749354|ref|ZP_15225224.1| DNA polymerase I [Yersinia pestis PY-65]
gi|420760457|ref|ZP_15234575.1| DNA polymerase I [Yersinia pestis PY-66]
gi|420760611|ref|ZP_15234694.1| DNA polymerase I [Yersinia pestis PY-71]
gi|420765633|ref|ZP_15239240.1| DNA polymerase I [Yersinia pestis PY-72]
gi|420770826|ref|ZP_15243888.1| DNA polymerase I [Yersinia pestis PY-76]
gi|420776041|ref|ZP_15248609.1| DNA polymerase I [Yersinia pestis PY-88]
gi|420781442|ref|ZP_15253347.1| DNA polymerase I [Yersinia pestis PY-89]
gi|420786967|ref|ZP_15258170.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|420792449|ref|ZP_15263117.1| DNA polymerase I [Yersinia pestis PY-91]
gi|420802870|ref|ZP_15272489.1| DNA polymerase I [Yersinia pestis PY-92]
gi|420802973|ref|ZP_15272574.1| DNA polymerase I [Yersinia pestis PY-93]
gi|420808238|ref|ZP_15277351.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|420813715|ref|ZP_15282246.1| DNA polymerase I [Yersinia pestis PY-95]
gi|420819047|ref|ZP_15287103.1| DNA polymerase I [Yersinia pestis PY-96]
gi|420829404|ref|ZP_15296402.1| DNA polymerase I [Yersinia pestis PY-98]
gi|420829822|ref|ZP_15296761.1| DNA polymerase I [Yersinia pestis PY-99]
gi|420834867|ref|ZP_15301310.1| DNA polymerase I [Yersinia pestis PY-100]
gi|420845246|ref|ZP_15310725.1| DNA polymerase I [Yersinia pestis PY-101]
gi|420845622|ref|ZP_15311051.1| DNA polymerase I [Yersinia pestis PY-102]
gi|420850769|ref|ZP_15315681.1| DNA polymerase I [Yersinia pestis PY-103]
gi|420856406|ref|ZP_15320392.1| DNA polymerase I [Yersinia pestis PY-113]
gi|421761441|ref|ZP_16198241.1| DNA polymerase I [Yersinia pestis INS]
gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM10+]
gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342853129|gb|AEL71682.1| DNA polymerase I [Yersinia pestis A1122]
gi|391434738|gb|EIQ95899.1| DNA polymerase I [Yersinia pestis PY-02]
gi|391434977|gb|EIQ96095.1| DNA polymerase I [Yersinia pestis PY-01]
gi|391450511|gb|EIR10140.1| DNA polymerase I [Yersinia pestis PY-05]
gi|391451018|gb|EIR10563.1| DNA polymerase I [Yersinia pestis PY-04]
gi|391452375|gb|EIR11784.1| DNA polymerase I [Yersinia pestis PY-06]
gi|391453481|gb|EIR12793.1| DNA polymerase I [Yersinia pestis PY-09]
gi|391466715|gb|EIR24764.1| DNA polymerase I [Yersinia pestis PY-07]
gi|391467365|gb|EIR25351.1| DNA polymerase I [Yersinia pestis PY-10]
gi|391467553|gb|EIR25523.1| DNA polymerase I [Yersinia pestis PY-08]
gi|391484596|gb|EIR40834.1| DNA polymerase I [Yersinia pestis PY-12]
gi|391484982|gb|EIR41178.1| DNA polymerase I [Yersinia pestis PY-11]
gi|391498899|gb|EIR53604.1| DNA polymerase I [Yersinia pestis PY-13]
gi|391499180|gb|EIR53831.1| DNA polymerase I [Yersinia pestis PY-15]
gi|391500256|gb|EIR54779.1| DNA polymerase I [Yersinia pestis PY-19]
gi|391502336|gb|EIR56646.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|391513900|gb|EIR67062.1| DNA polymerase I [Yersinia pestis PY-16]
gi|391516538|gb|EIR69427.1| DNA polymerase I [Yersinia pestis PY-25]
gi|391517582|gb|EIR70370.1| DNA polymerase I [Yersinia pestis PY-32]
gi|391529396|gb|EIR81090.1| DNA polymerase I [Yersinia pestis PY-29]
gi|391532088|gb|EIR83519.1| DNA polymerase I [Yersinia pestis PY-34]
gi|391535002|gb|EIR86121.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|391546567|gb|EIR96543.1| DNA polymerase I [Yersinia pestis PY-36]
gi|391548382|gb|EIR98190.1| DNA polymerase I [Yersinia pestis PY-46]
gi|391548809|gb|EIR98568.1| DNA polymerase I [Yersinia pestis PY-42]
gi|391563323|gb|EIS11645.1| DNA polymerase I [Yersinia pestis PY-52]
gi|391563540|gb|EIS11846.1| DNA polymerase I [Yersinia pestis PY-47]
gi|391565484|gb|EIS13592.1| DNA polymerase I [Yersinia pestis PY-48]
gi|391566715|gb|EIS14674.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|391578932|gb|EIS25125.1| DNA polymerase I [Yersinia pestis PY-55]
gi|391579094|gb|EIS25267.1| DNA polymerase I [Yersinia pestis PY-53]
gi|391580149|gb|EIS26179.1| DNA polymerase I [Yersinia pestis PY-56]
gi|391606774|gb|EIS49467.1| DNA polymerase I [Yersinia pestis PY-60]
gi|391608253|gb|EIS50765.1| DNA polymerase I [Yersinia pestis PY-61]
gi|391608547|gb|EIS51023.1| DNA polymerase I [Yersinia pestis PY-58]
gi|391609178|gb|EIS51603.1| DNA polymerase I [Yersinia pestis PY-59]
gi|391622214|gb|EIS63169.1| DNA polymerase I [Yersinia pestis PY-63]
gi|391623734|gb|EIS64470.1| DNA polymerase I [Yersinia pestis PY-66]
gi|391631264|gb|EIS70914.1| DNA polymerase I [Yersinia pestis PY-64]
gi|391632922|gb|EIS72400.1| DNA polymerase I [Yersinia pestis PY-65]
gi|391643976|gb|EIS82075.1| DNA polymerase I [Yersinia pestis PY-71]
gi|391647023|gb|EIS84706.1| DNA polymerase I [Yersinia pestis PY-72]
gi|391656567|gb|EIS93188.1| DNA polymerase I [Yersinia pestis PY-76]
gi|391664114|gb|EIS99880.1| DNA polymerase I [Yersinia pestis PY-88]
gi|391669288|gb|EIT04428.1| DNA polymerase I [Yersinia pestis PY-89]
gi|391670250|gb|EIT05309.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|391673402|gb|EIT08128.1| DNA polymerase I [Yersinia pestis PY-91]
gi|391673777|gb|EIT08456.1| DNA polymerase I [Yersinia pestis PY-92]
gi|391687906|gb|EIT21176.1| DNA polymerase I [Yersinia pestis PY-93]
gi|391690645|gb|EIT23657.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|391691607|gb|EIT24519.1| DNA polymerase I [Yersinia pestis PY-98]
gi|391702763|gb|EIT34613.1| DNA polymerase I [Yersinia pestis PY-95]
gi|391705298|gb|EIT36863.1| DNA polymerase I [Yersinia pestis PY-96]
gi|391706171|gb|EIT37631.1| DNA polymerase I [Yersinia pestis PY-101]
gi|391717328|gb|EIT47706.1| DNA polymerase I [Yersinia pestis PY-99]
gi|391721177|gb|EIT51138.1| DNA polymerase I [Yersinia pestis PY-100]
gi|391732011|gb|EIT60637.1| DNA polymerase I [Yersinia pestis PY-102]
gi|391735443|gb|EIT63583.1| DNA polymerase I [Yersinia pestis PY-103]
gi|391737910|gb|EIT65756.1| DNA polymerase I [Yersinia pestis PY-113]
gi|411177763|gb|EKS47775.1| DNA polymerase I [Yersinia pestis INS]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
Length = 934
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
GA ++N ++ A E L E + L S + LPL + +SG RVH S
Sbjct: 610 GAASTNEEVLA---ELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISG---RVHTS 663
Query: 828 LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
+ T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AHL+
Sbjct: 664 YHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLS 723
Query: 887 NCKSMLDAFKAGGDFHSRTAMNMY 910
K +L AF G D H TA ++
Sbjct: 724 QDKGLLAAFAEGKDIHRATAAEVF 747
>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
YSN+ +DN V +K +L N + + DTE D P+ E++
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
S F + V + ++NEF P FE + KV N +D VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474
Query: 455 GLKVSGFHADTM 466
G +V G DTM
Sbjct: 475 GTEVRGPLFDTM 486
>gi|357634312|ref|ZP_09132190.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
gi|357582866|gb|EHJ48199.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
Length = 878
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T QEA E + + E ++ L S ++ PL ++ GR+H + N + T T
Sbjct: 559 STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 616
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P ++R+ F+A G L+ ADY Q+ELR+LAHL+ ++L A
Sbjct: 617 GRLSSSNPNLQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAA 676
Query: 895 FKAGGDFHSRTAMNMY 910
F+ G D H+RTA ++
Sbjct: 677 FEQGADIHARTAAILF 692
>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
gi|444309209|ref|ZP_21144849.1| DNA polymerase I [Ochrobactrum intermedium M86]
gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
gi|443487600|gb|ELT50362.1| DNA polymerase I [Ochrobactrum intermedium M86]
Length = 985
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 823 RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH C +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 707 RVHTCYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 766
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 767 LAHVADIAQLKQAFADGIDIHAMTASEMF 795
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 90/324 (27%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG-- 420
A DTE +D Q E++ FS+ P + G G DLL GG
Sbjct: 399 AFDTETTSVDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGGTV 446
Query: 421 -GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
G+ L E ED S+ K+ N +D ++ YG+ F DTM ++ + D+
Sbjct: 447 EGQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRYGINTVSFD-DTMLISYVLDAG 505
Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDG 533
G + ++ L+ E ++G I+ KD+ G
Sbjct: 506 ---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG-------- 531
Query: 534 SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
+GK S + ++ R +Y+A D+ TL+L++ LK +L +
Sbjct: 532 -SGKSSVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------AAEG 573
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
+ Y+ +P ++L +ME G+ VDR+ LS + A + + A +
Sbjct: 574 LMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER---- 629
Query: 654 KYMNVGSDTQLRQLLFG--GKPNS 675
+GS QL +LFG G P +
Sbjct: 630 --FTIGSPKQLGDILFGKMGLPGA 651
>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
Length = 938
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIR 858
++ L S + LQ ++ GRVH S + TGRL++ PNLQN P ++ +IR
Sbjct: 641 ALSKLKSTYTDALQ-DHIDPDTGRVHTSYVQTGATTGRLASTDPNLQNIPVRSEEGRRIR 699
Query: 859 QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AF+A PGN L+ DY Q+ELRILAH+A+ ++ AF+ G D H+ TA M+
Sbjct: 700 EAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIHAMTASEMF 751
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 130/324 (40%), Gaps = 79/324 (24%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI-----CFSIYSGPEADFGNGKSCIW 413
W+ + + LV A DTE ++ Q V + C+ E G+ S
Sbjct: 343 WIAHIQARGLV-AVDTETTSLNEMQAALVGISLAVEPGRACYIPLRHTEGASGDLFSS-- 399
Query: 414 VDLLDGGGRDL---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
D L G DL L P ED +I K+ N +D + +G++V+ F DTM M+
Sbjct: 400 -DALAEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARHGIRVAPFD-DTMLMSY 457
Query: 471 LWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLK 530
++ G+ ++ L SE ++Q I +K++ G K
Sbjct: 458 ALNAGIH---GHGMDTL-------SERYLSHQP--------------IPIKELLGTGK-- 491
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
SA + PV + + Y+A D+ TL+L+ K +L
Sbjct: 492 ---SAVTFDRV-PVAD--------AVKYAAEDADITLRLWHVFKPQLHR----------- 528
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKW 645
+ + Y+ +P +L +ME G+ VDRE LS + +K+A+ E+E RK+
Sbjct: 529 -EKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRMSGKFAQKMAQLEEEIHELAGRKF 587
Query: 646 ASKHCPDAKYMNVGSDTQLRQLLF 669
NVGS QL ++LF
Sbjct: 588 -----------NVGSPKQLGEILF 600
>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|422015986|ref|ZP_16362576.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
gi|414095433|gb|EKT57095.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
Length = 930
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL +S + RVH S + T TGRLS+R PNLQN P
Sbjct: 629 LLEHRSLAKLKSTYTDKLPLM---ISKRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 686 EEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF 744
>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 899
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 794 ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
A+ E S+ L S ++ L G + K+GR+H + + T TGRLS+ PNLQN P +
Sbjct: 598 AILEYRSLSKLKSTYLDTLPG--LVAKDGRIHTTYHQAATATGRLSSSDPNLQNIPVRTE 655
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AF+A G L+ ADY Q+ELR+LAH+A +LDAF+ D HSRTA ++
Sbjct: 656 LGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIF 713
>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
Length = 994
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
V A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ + G L E ++G I+ KD+ G
Sbjct: 512 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
gi|345517007|ref|ZP_08796487.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
YSN+ +DN V +K +L N + + DTE D P+ E++
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
S F + V + ++NEF P FE + KV N +D VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474
Query: 455 GLKVSGFHADTM 466
G +V G DTM
Sbjct: 475 GTEVRGPLFDTM 486
>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
Length = 932
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
gi|384210490|ref|YP_005599572.1| DNA polymerase I [Brucella melitensis M5-90]
gi|384407595|ref|YP_005596216.1| DNA polymerase I [Brucella melitensis M28]
gi|384444212|ref|YP_005602931.1| DNA polymerase I [Brucella melitensis NI]
gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
gi|349742209|gb|AEQ07752.1| DNA polymerase I [Brucella melitensis NI]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ + G L E ++G I+ KD+ G
Sbjct: 496 DAGTDSHGMDPLS--------------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|430762992|ref|YP_007218849.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
gi|430012616|gb|AGA35368.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
Length = 902
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 622 IHPETGRVHTSYHQAVAATGRLSSSDPNLQNIPVRTDEGRRIRQAFIAEPGQVLLAADYS 681
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L+AF AG D H TA ++
Sbjct: 682 QIELRIMAHLSRDRGLLEAFAAGEDIHRATAAEVF 716
>gi|407698276|ref|YP_006823063.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
gi|407247423|gb|AFT76608.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
Length = 929
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAFI GN + ADY
Sbjct: 648 INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFIPREGNKFVAADYS 707
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 708 QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQ 753
>gi|398344473|ref|ZP_10529176.1| DNA polymerase I [Leptospira inadai serovar Lyme str. 10]
Length = 871
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
++T+ E E I L + LIS ++ L + VS K+GR+H + N+
Sbjct: 549 YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVETLP-TMVSAKDGRIHTNYNMTIAA 607
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSML 892
TGRLS+ PNLQN P EK+ IR+ FI+ + L+ DY Q+ELRI+AH++ +ML
Sbjct: 608 TGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFELLSLDYSQIELRIMAHVSGDPAML 667
Query: 893 DAFKAGGDFHSRTAMNMY 910
DA+K G D H RTA +Y
Sbjct: 668 DAYKKGIDIHKRTASALY 685
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 56/242 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
P DPSI KV N +D VLEN+G +V DTM + + R ++++ L
Sbjct: 349 LGPVLSDPSIPKVGQNIKYDLIVLENHGFEVGNIVFDTMLASYILQPESRH---HNMDDL 405
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
+++ YQ I D+ G K KK+ L
Sbjct: 406 -------AKELLNYQT--------------IHYSDLVGTGKNKKN--------------L 430
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
E E Y++ D+ TL+LY SL+K PV M Y+E P
Sbjct: 431 WEVELEKVSEYASEDADITLRLYNSLRK------------PVKDSGMESVYKEIDLPLIR 478
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L ME G+ +D Y +E+ K + E + V K+A + N+ S +L+++
Sbjct: 479 VLADMEKAGIAIDAGYFAELSKDFQREVKDLVRHIHKYAGRE------FNIASTKELQKV 532
Query: 668 LF 669
LF
Sbjct: 533 LF 534
>gi|389578957|ref|ZP_10168984.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
gi|389400592|gb|EIM62814.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
Length = 896
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKD 853
L ++D L S ++ L S V + GR+H S N T TGRLS+ PNLQN P + +
Sbjct: 594 LLRYRTLDKLKSTYVDSL-SSLVHPQTGRIHTSFNQTITVTGRLSSSNPNLQNIPIRKPE 652
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
KIRQAFI G +LI ADY Q+ELR+LAH A ++++F+ D H+RTA+ ++
Sbjct: 653 GKKIRQAFIPADGCTLISADYSQIELRLLAHCAMDPILIESFRKDEDIHTRTALEVF 709
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGG------R 422
V A DTE ID P+ +++ S +A F I V + GG
Sbjct: 318 VFAVDTETTDID-----PM-RADLVGLSFSYMEDAGF-----YIPVGHTNTGGIQMPEKE 366
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
DLL F P E+P I KV N +D VL YG+++ G DTM + L + R G
Sbjct: 367 DLLRIFKPLLENPDIAKVGQNIKYDFIVLARYGIEIKGIVFDTMIASHLLNPGTRGHG 424
>gi|420555009|ref|ZP_15052116.1| DNA polymerase I, partial [Yersinia pestis PY-03]
gi|391438600|gb|EIQ99332.1| DNA polymerase I, partial [Yersinia pestis PY-03]
Length = 806
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ +L AF AG D H TA ++ V T Q
Sbjct: 704 IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ 756
>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
V A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
Length = 688
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 404 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 463
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 464 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 498
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 100 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 146
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 147 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 205
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 206 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 234
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 235 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 273
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 274 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 329
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 330 --GEKFTIGSPKQLGDILFGKMGLPGA 354
>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
gi|376275103|ref|YP_005115542.1| DNA polymerase I [Brucella canis HSK A52141]
gi|376279825|ref|YP_005153831.1| DNA polymerase I [Brucella suis VBI22]
gi|384223819|ref|YP_005614983.1| DNA polymerase I [Brucella suis 1330]
gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
gi|343381999|gb|AEM17491.1| DNA polymerase I [Brucella suis 1330]
gi|358257424|gb|AEU05159.1| DNA polymerase I [Brucella suis VBI22]
gi|363403670|gb|AEW13965.1| DNA polymerase I [Brucella canis HSK A52141]
Length = 979
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 695 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 754
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 755 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 789
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 391 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 437
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 438 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 496
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 497 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 525
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 526 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 564
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 565 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 620
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 621 --GEKFTIGSPKQLGDILFGKMGLPGA 645
>gi|403529939|ref|YP_006664468.1| DNA polymerase I [Bartonella quintana RM-11]
gi|403232011|gb|AFR25754.1| DNA polymerase I [Bartonella quintana RM-11]
Length = 968
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + K GR+H + ++ T TGRLS+ PNLQN P + KIR AFIA G+ L+ AD
Sbjct: 682 SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 742 YSQIELRILAHIADITALKEAFAQGQDIHAITASQMF 778
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 127/317 (40%), Gaps = 73/317 (23%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
R L P ED ++ K+ N +D V++ YG+ + F DTM ++ D
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGVVIRCFD-DTMLLSYALDVG------ 488
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
ALT + +SE ++ I+ KD+ K KI++
Sbjct: 489 ----ALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
A V+ Q Y+A D+ TL+L++ LK +L+ + M Y+
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P E+L +ME G+LVD++ L R E A F + + N+ S
Sbjct: 565 DRPLVEVLARMEERGILVDKQIL------LRLSGELAQAVFILEEEIYQLAGEKFNLASP 618
Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
QL +LFG G +K S + + E + AEG P K +R + L
Sbjct: 619 KQLGDILFGKMSLPGGTKTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672
Query: 713 RSIGVD-LPTEMYTATG 728
+S D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689
>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
Length = 875
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T+QE EA + I + +I L + +I + ++ K+G++H + +T
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKKDGKIHTTFQQTIAQT 613
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ IR+AF+ GN L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614 GRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDA 673
Query: 895 FKAGGDFHSRTAMNMY 910
FK G D H +TA ++
Sbjct: 674 FKHGADIHRKTASEVF 689
>gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
V A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ + G L E ++G I+ KD+ G
Sbjct: 496 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 852
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 794 ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
A+ E S+ L S ++ L G + K+GR+H + + T TGRLS+ PNLQN P +
Sbjct: 551 AILEYRSLSKLKSTYLDTLPG--LVAKDGRIHTTYHQAATATGRLSSSDPNLQNIPVRTE 608
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AF+A G L+ ADY Q+ELR+LAH+A +LDAF+ D HSRTA ++
Sbjct: 609 LGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIF 666
>gi|397685261|ref|YP_006522580.1| DNA polymerase I [Pseudomonas stutzeri DSM 10701]
gi|395806817|gb|AFN76222.1| DNA polymerase I [Pseudomonas stutzeri DSM 10701]
Length = 914
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
Q+ELRI+AHLA +L AF+ G D H TA ++ VE QV
Sbjct: 693 SQIELRIMAHLAQDAGLLHAFQNGLDVHRATAAEVF-----GVELAQV 735
>gi|395764875|ref|ZP_10445495.1| DNA polymerase I [Bartonella sp. DB5-6]
gi|395413692|gb|EJF80154.1| DNA polymerase I [Bartonella sp. DB5-6]
Length = 968
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Query: 815 SNVSGKNGRVHC--SLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
S + K GRVH SL I T TGRLS+ PNLQN P + KIR AFIA G+ L+ A
Sbjct: 682 SYIFPKTGRVHTNYSLAITT-TGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSA 740
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 741 DYSQIELRILAHIADITALKEAFAQGQDIHAITASQMF 778
>gi|423313082|ref|ZP_17291018.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
gi|392686296|gb|EIY79602.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
YSN+ +DN V +K +L N + + DTE D P+ E++
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
S F + V + ++NEF P FE + KV N +D VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474
Query: 455 GLKVSGFHADTM 466
G +V G DTM
Sbjct: 475 GTEVRGPLFDTM 486
>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
Length = 1273
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S ++ PL + K GR+H N T TGRLS+ PNLQN P + +IR+
Sbjct: 549 LTKLKSTYLDPLP-KLIHPKTGRLHTRFNQTGTATGRLSSVDPNLQNIPVRTEIGRRIRK 607
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF A PG L+VADY Q+ELR+LAHL+ +++++ F+ G D H++TA M+
Sbjct: 608 AFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMF 658
>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter arcticus 238]
gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter arcticus 238]
Length = 928
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ + GRVH S +I TGRLS+ PNLQN P + KIR+
Sbjct: 632 LSKLKSTYTDALQ-THINSETGRVHTSYSITGANTGRLSSTDPNLQNIPIRTDEGRKIRE 690
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA G L+ DY Q+ELRILAH+AN ++ AF+ G D H+ TA M+
Sbjct: 691 AFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMF 741
>gi|423230541|ref|ZP_17216945.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
gi|423244250|ref|ZP_17225325.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
gi|392630685|gb|EIY24671.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
gi|392642431|gb|EIY36197.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
YSN+ +DN V +K +L N + + DTE D P+ E++
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419
Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
S F + V + ++NEF P FE + KV N +D VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474
Query: 455 GLKVSGFHADTM 466
G +V G DTM
Sbjct: 475 GTEVRGPLFDTM 486
>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
Length = 995
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 711 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 770
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 771 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 805
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 407 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 453
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 454 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 512
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 513 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 541
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 542 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 580
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 581 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 636
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 637 --GEKFTIGSPKQLGDILFGKMGLPGA 661
>gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ + G L E ++G I+ KD+ G
Sbjct: 496 DAGTGSHGMAPLS--------------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRAT-----AYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
Length = 954
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A+ L E + L S + LP ++ + GRVH
Sbjct: 630 KGAPSTNEEVL--EELAQMGHQVPVLLMEHRGLSKLKSTYTDKLP---QMINAQTGRVHT 684
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 685 SYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
AN +M+ AF G D H TA ++ AV + Q
Sbjct: 745 ANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQ 780
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 127/353 (35%), Gaps = 94/353 (26%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG-----PEADFGNGKSCIW 413
W+ + LV A DTE +D Q V I F + +G P A G
Sbjct: 347 WLAKLQMAELV-AVDTETDNLDAMQANLVG----ISFGLENGEACYIPLAHKGKIAQPTQ 401
Query: 414 VDLLDGGGRDL----------------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK 457
VDL +L L + P E+P+I+K+ N +D + YG++
Sbjct: 402 VDLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARYGIE 461
Query: 458 VSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK 517
+ G DTM + DS+ R E G + + E+ GK
Sbjct: 462 LQGVAFDTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEE----------------LAGK 505
Query: 518 ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL 577
G+ +L D + E + Y+ D+ T+KL++ L
Sbjct: 506 -------GKHQLTFD----------------QIELDKATEYAGEDAEITMKLHQLL---- 538
Query: 578 LEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVAR 632
W +L P + +++ P +L ++E G+L+D L EIE+ +
Sbjct: 539 ----WSELQKTP----ELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLK 590
Query: 633 AEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
E E V H + N+ S QL+++LF G P K + P
Sbjct: 591 -ELETLV---------HQEAGEVFNLASTKQLQEILFNKLGLPILKKTPKGAP 633
>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
gi|376271967|ref|YP_005150545.1| DNA polymerase I [Brucella abortus A13334]
gi|423167735|ref|ZP_17154438.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
gi|423169889|ref|ZP_17156564.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
gi|423175120|ref|ZP_17161789.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
gi|423178029|ref|ZP_17164674.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
gi|423179322|ref|ZP_17165963.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
gi|423182452|ref|ZP_17169089.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
gi|423186605|ref|ZP_17173219.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
gi|423190957|ref|ZP_17177565.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
polymerase, family A:5'-3' exonuclease:3'-5'
exonuclease:Hel [Brucella melitensis biovar Abortus
2308]
gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
gi|363399573|gb|AEW16543.1| DNA polymerase I [Brucella abortus A13334]
gi|374537351|gb|EHR08864.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
gi|374541169|gb|EHR12668.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
gi|374542125|gb|EHR13614.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
gi|374548329|gb|EHR19780.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
gi|374550841|gb|EHR22276.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
gi|374551298|gb|EHR22732.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
gi|374553647|gb|EHR25061.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
gi|374558284|gb|EHR29678.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|410616005|ref|ZP_11327000.1| DNA polymerase I [Glaciecola polaris LMG 21857]
gi|410164320|dbj|GAC31138.1| DNA polymerase I [Glaciecola polaris LMG 21857]
Length = 876
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + ++RQAFIA PG ++ ADY
Sbjct: 595 INERTGRVHTSYHQAITATGRLSSTDPNLQNIPIRSEQGRRVRQAFIARPGYKVVAADYS 654
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF G D HS TA ++
Sbjct: 655 QIELRIMAHLSQDQGLLTAFSEGKDIHSATAAEVF 689
>gi|410629263|ref|ZP_11339967.1| DNA polymerase I [Glaciecola mesophila KMM 241]
gi|410151059|dbj|GAC26736.1| DNA polymerase I [Glaciecola mesophila KMM 241]
Length = 928
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + T TGRLS+ PNLQN P + ++RQAFIA PG ++ ADY
Sbjct: 647 INPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF G D H+ TA ++
Sbjct: 707 QIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVF 741
>gi|395767572|ref|ZP_10448105.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
gi|395413935|gb|EJF80388.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
Length = 968
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA G+ L+ AD
Sbjct: 682 SYIFPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHLLLSAD 741
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 742 YSQIELRILAHVADITALKEAFAQGQDIHAITASQMF 778
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 92/379 (24%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE-ADFGNGKSCIWVDLLDGGGRDL----- 424
A DTE +D Q +++ FS+ PE A + D L G GR +
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALQPEKAAYVPLAHIEGGDDLLGSGRIVGQIEI 435
Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
L P E+ ++ K+ N +D V++ Y + + F DTM ++ D+ T
Sbjct: 436 EKALALLKPILENDAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLSYALDAGVLT--- 491
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+S++AL+ E ++G +S KD+ K KI+
Sbjct: 492 HSMDALS-----------------------ERWLGHKPVSYKDLTHNGK--------KIT 520
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ A V+ Q Y+A D+ TL+L++ LK +++ + M Y+
Sbjct: 521 SFAQVDLKQAT------LYAAEDADITLRLWQVLKPQIV------------AQGMTRIYE 562
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P E+L +ME G+LVDR+ L R E A F + + N+
Sbjct: 563 RLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGERFNLA 616
Query: 660 SDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT 711
S QL +LFG G +K S + + E + AEG P K +R +
Sbjct: 617 SPKQLGDILFGKMGLLGGAKTKGGQWSTSAQTL------EELAAEGHILPRKVIDWRQLA 670
Query: 712 -LRSIGVD-LPTEMYTATG 728
L+S D LP+ ++ TG
Sbjct: 671 KLKSTYADALPSYIFPKTG 689
>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 999
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY
Sbjct: 713 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A + AF+ G D H+ TA M+
Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF 807
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED ++ KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656
>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
Length = 957
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFI G
Sbjct: 674 LPLM---INQKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYK 730
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHLAN + M+ AF G D H TA ++
Sbjct: 731 IVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIF 772
>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
Length = 994
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
gi|340789749|ref|YP_004755213.1| DNA polymerase I [Brucella pinnipedialis B2/94]
gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
gi|340558207|gb|AEK53445.1| DNA polymerase I [Brucella pinnipedialis B2/94]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGRHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
Length = 994
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
Length = 949
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 781 TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ETGRLSA 839
T Q+ R I + E + L+S ++ L ++ K ++H S N TGRLS+
Sbjct: 634 TLQKLRNRHPIIKLILEHRGLKKLLSTYVEALP-KLINPKTNKIHTSFNQTVVSTGRLSS 692
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P + +IR+AFIA PG L+ ADY Q+ELRI+AHL+ ++ML AF +G
Sbjct: 693 SNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAFASGQ 752
Query: 900 DFHSRTAMNMY 910
D H+ TA ++
Sbjct: 753 DIHAATAARIF 763
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 95/247 (38%), Gaps = 51/247 (20%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L FAP ED SI+K N +D VL NYG+ V G DTM L R Y
Sbjct: 416 EILRRFAPLLEDASIEKTGQNMKYDISVLGNYGIGVGGRMFDTMIAHYLLQPELRHNMDY 475
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
E G R I ++F K KK G
Sbjct: 476 MAEVFLGYR-------------------------TIHFGELFDDDKTKKSGK-------- 502
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P+E++++ E Y+ D+ TL+L +KL E S K + + +
Sbjct: 503 PIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLK------------NLFFDIE 550
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P IL KME+ G+L+D L+ + + E + + P +N+ S
Sbjct: 551 MPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILAYVD--LP----INISSPK 604
Query: 663 QLRQLLF 669
Q+ +LLF
Sbjct: 605 QIGELLF 611
>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLVQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
Length = 994
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
gi|423240816|ref|ZP_17221930.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
gi|212664838|gb|EEB25410.1| DNA-directed DNA polymerase [Bacteroides dorei DSM 17855]
gi|392643778|gb|EIY37527.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
Length = 971
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
Length = 978
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 694 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 788
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 130/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q GE++ FS+ P GK+ +V DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------GELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644
>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
Length = 994
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
Length = 954
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ E+ A+ L E + L S + LP ++ + GRVH
Sbjct: 630 KGAPSTNEEVL--EELAQMGHQVPVLLMEHRGLSKLKSTYTDKLP---QMINAQTGRVHT 684
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL
Sbjct: 685 SYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
AN +M+ AF G D H TA ++ AV + Q
Sbjct: 745 ANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQ 780
>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
Length = 971
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
>gi|349702017|ref|ZP_08903646.1| DNA polymerase I [Gluconacetobacter europaeus LMG 18494]
Length = 924
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PGN L+ AD
Sbjct: 642 NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGNVLVSAD 701
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LA +A+ ++ +AF G D H+RTA ++
Sbjct: 702 YSQIELRLLADVADIPALREAFALGQDIHARTASEVF 738
>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Bermanella marisrubri]
gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
Length = 916
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K+ RVH S + T TGRLS+ PNLQN P ++ KIRQAF A G +
Sbjct: 632 LPLM---INSKSQRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRKIRQAFEAPEGYT 688
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
L+ ADY Q+ELRI+AHL+ K +LDAFK G D H TA
Sbjct: 689 LVAADYSQIELRIMAHLSGDKGLLDAFKNGKDIHRATA 726
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 109/281 (38%), Gaps = 75/281 (26%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P ED + KKV N +D HVL+NY ++++G DTM + + +S+
Sbjct: 389 VLQKMKPLLEDETPKKVGQNLKYDAHVLKNYDIELNGIAHDTMLESYVLNST-------- 440
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
SK N D+ K G + + AGK +
Sbjct: 441 ---------------------ASKHNMDD------LAKHYLGHECIDFESIAGKGAKQLT 473
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
++ E+ Y+A D+ TL+L++ L +L +S+ Y++
Sbjct: 474 FNQIPVEQAG---EYAAEDADITLRLHQVLWPQL-----------EADESLLTLYKKVEL 519
Query: 604 PFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNV 658
P ++L ME G V+ + L SEIE+ R ++ K H + N+
Sbjct: 520 PLVQVLTNMEYVGASVNADKLHQQSSEIEQ-----------RLQELERKAHDIAGEVFNL 568
Query: 659 GSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
GS QL+ + F E L + I K P + AE
Sbjct: 569 GSTKQLQAIFF----------EKLELPVIKKTPKGQPSTAE 599
>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
Length = 932
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ GRVH S +I TGRL++ PNLQN P ++ +IR+AF+A PG +L+ DY
Sbjct: 650 HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVALDY 709
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+AN + AF+ G D H+ TA M+
Sbjct: 710 SQIELRILAHIANIPELKQAFQDGIDIHALTASEMF 745
>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
Length = 971
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
>gi|345514278|ref|ZP_08793791.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
Length = 971
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ + G++H S N
Sbjct: 650 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ +M
Sbjct: 707 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AFK G D H+ TA +Y
Sbjct: 767 IEAFKEGDDIHAATAAKVY 785
>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
Length = 928
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + T TGRLS+ PNLQN P + ++RQAFIA PG ++ ADY
Sbjct: 647 INPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF G D H+ TA ++
Sbjct: 707 QIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVF 741
>gi|410664861|ref|YP_006917232.1| DNA polymerase I [Simiduia agarivorans SA1 = DSM 21679]
gi|409027218|gb|AFU99502.1| DNA polymerase I [Simiduia agarivorans SA1 = DSM 21679]
Length = 915
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GR+H S + T TGRLS+ PNLQN P ++ +IRQAF+A G L+ ADY
Sbjct: 634 INPRTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTEEGRRIRQAFVAPKGYKLVAADYS 693
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL++ K +LDAF G D H TA ++
Sbjct: 694 QIELRIMAHLSDDKGLLDAFAQGLDVHKATAAEVF 728
>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
Length = 994
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY
Sbjct: 710 INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 770 QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF 804
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
+ A DTE +D Q E++ FS+ P GK+ +V DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452
Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
G + L ED SI K+ N +D V+ +G+ F DTM ++ +
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511
Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
D+ G + ++ L+ E ++G I+ KD+ G
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+GK + + ++ R +Y+A D+ TL+L++ LK +L
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
+ + Y+ +P ++L +ME G+ VDR+ LS + Q AA +A
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635
Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
+ +GS QL +LFG G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660
>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
Length = 932
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ +++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 636 LSKLKSTYTDALQ-DHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIRE 694
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PG +L+ DY Q+ELRILAH+AN + AF+ G D H+ TA M+
Sbjct: 695 AFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHALTASEMF 745
>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
Length = 945
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ ++GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 660 LPLM---VNAQSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKK 716
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 717 VLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 758
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 144/363 (39%), Gaps = 87/363 (23%)
Query: 317 GQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEV 376
G + ++S+N E+ E++ + + Y ++ + A K + LT K + A DTE
Sbjct: 322 GSSAQSSDNSADEE-EVVPQAIDAEYETILTHE---ALDKWIEQLT---KADLIAIDTET 374
Query: 377 AKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFF 432
+D V I F++ G A + D LD + + + + P
Sbjct: 375 TSLDYMTAKLVG----ISFAVEVGKAAYL-----PLAHDYLDAPEQLDFDEAIAKLKPLL 425
Query: 433 EDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492
EDP +KKV N +D + N G+K+ G DTM + +++S
Sbjct: 426 EDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVA---------------- 469
Query: 493 VMSEDKKAYQKDMSKGNTDE---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
SK N D+ ++G IS ++I G+ + + + T AP
Sbjct: 470 -------------SKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIDLETAAP---- 512
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFG 606
Y+A D+ TL+L++ L W +L+ +P + + + P
Sbjct: 513 ----------YAAEDADITLRLHQHL--------WARLEKEP----KLASVFTDIELPLV 550
Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
++L K+E +G+L+D L + QE A++ + + N+ S QL+
Sbjct: 551 QVLSKIERQGVLIDSMMLGQ------QSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQA 604
Query: 667 LLF 669
L F
Sbjct: 605 LFF 607
>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
Length = 918
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ + GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 633 LPLM---VNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKK 689
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 690 ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 731
>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
Length = 743
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 420 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 473
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 474 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 533
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 534 SGDQGLINAFSQGKDIHRSTAAEIF 558
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 160/379 (42%), Gaps = 89/379 (23%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ +++AK
Sbjct: 110 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNSAK 167
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 168 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 205
Query: 416 LLDG----GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 206 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 265
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 266 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI-------- 305
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 306 -----------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 336
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
++ + Y+ P +L +ME G+L+D + L I+ A + A+ + + +A
Sbjct: 337 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQ 392
Query: 651 PDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 393 P----FNLASTKQLQEILF 407
>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
Length = 942
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGRVH S + T TGRLS+R PNLQN P ++ +IR+AF A G +LI ADY
Sbjct: 662 LADKNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYA 721
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ K+++ AF+ G D H+ TA ++
Sbjct: 722 QIELVILAHLSQDKNLVQAFQEGTDVHAATAALIF 756
>gi|407685815|ref|YP_006800988.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407289195|gb|AFT93507.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 930
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAF+ GN + ADY
Sbjct: 649 INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 709 QIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQ 754
>gi|395789048|ref|ZP_10468578.1| DNA polymerase I [Bartonella taylorii 8TBB]
gi|395431182|gb|EJF97209.1| DNA polymerase I [Bartonella taylorii 8TBB]
Length = 968
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 680 LPSYILP--------KTGRVHTNYSLATTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 732 PKGHVLLSADYSQIELRILAHIADITALKKAFSQGQDIHAITASQMF 778
>gi|424889177|ref|ZP_18312780.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174726|gb|EJC74770.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 999
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY
Sbjct: 713 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A + AF+ G D H+ TA M+
Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF 807
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED ++ KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 465 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I K++ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKEVAG---------SGKAN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656
>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
Length = 933
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 637 LSKLKSTYTDALQ-THINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRE 695
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PGN L+ DY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 696 AFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMF 746
>gi|343500982|ref|ZP_08738867.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|418478599|ref|ZP_13047698.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819561|gb|EGU54404.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|384573754|gb|EIF04242.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 930
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 649 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K++LDAF+ G D HS TA + + V T Q
Sbjct: 709 QIELRIMAHLSGDKALLDAFQQGKDIHSATAAEIMGTTIDQVSTEQ 754
>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
gi|421760161|ref|ZP_16196982.1| DNA polymerase I [Bartonella bacilliformis INS]
gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
gi|411176633|gb|EKS46650.1| DNA polymerase I [Bartonella bacilliformis INS]
Length = 968
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S +S K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA G L+ AD
Sbjct: 682 SYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSAD 741
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ ++ +AF G D H+ TA M+
Sbjct: 742 YSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMF 778
>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 922
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L+S FI+ L + R+H + + T+TGRLS+ PNLQN PA ++ +IR
Sbjct: 627 LSKLLSTFIVGLH--KYIAADHRIHTTFHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRA 684
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA PG LI ADY Q+ELR+LAHL+ +ML AF A D H+ TA ++
Sbjct: 685 AFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVF 735
>gi|404317021|ref|ZP_10964954.1| DNA polymerase I [Ochrobactrum anthropi CTS-325]
Length = 976
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 758 LAHVADIAQLKQAFADGMDIHAMTASEMF 786
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 126/319 (39%), Gaps = 88/319 (27%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
V A DTE +D Q E++ FS+ P + G G DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435
Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
G+ L+E ED S+ K+ N +D V+ +G+ F DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494
Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKK 531
+ G + ++ L+ E ++G I KD+ G
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
+GK + + +L R +Y+A D+ TL+L++ LK +L
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
+ + Y+ +P ++L +ME G+ VDR+ LS + A + + A +
Sbjct: 563 EGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620
Query: 652 DAKYMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635
>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
Length = 915
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
AV T Q
Sbjct: 733 LEAVTTDQ 740
>gi|392404191|ref|YP_006440803.1| DNA polymerase I [Turneriella parva DSM 21527]
gi|390612145|gb|AFM13297.1| DNA polymerase I [Turneriella parva DSM 21527]
Length = 970
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KGA++++ + +E ++A I+ + E L+S ++ L G +VS GRVH SL
Sbjct: 617 KGAMSTDQSVL---EELKDAHPVIAPILEYRFYTKLLSTYVEALPG-HVSKTTGRVHTSL 672
Query: 829 N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
+ + TGRLS+ PNLQN P ++ +R AF+A G L+ DY Q+ELRILAH++
Sbjct: 673 SQVTAATGRLSSIDPNLQNIPVKGEEGANLRAAFVAAKGRKLLSLDYSQIELRILAHVSE 732
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
+++ A+K D H R A ++
Sbjct: 733 DANLIAAYKNDEDIHDRAAYMLF 755
>gi|406595017|ref|YP_006746147.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
gi|406372338|gb|AFS35593.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
Length = 930
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAF+ GN + ADY
Sbjct: 649 INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 709 QIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQ 754
>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
Length = 996
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + KIR+AF+A PG+ LI ADY
Sbjct: 712 VNKETGRVHTSYALAATTTGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYS 771
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 772 QIELRLLAHIADIPQLKKAFADGIDIHAMTASEMF 806
>gi|384919253|ref|ZP_10019309.1| DNA polymerase I [Citreicella sp. 357]
gi|384466864|gb|EIE51353.1| DNA polymerase I [Citreicella sp. 357]
Length = 934
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQ 859
I L S + LQG +++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 638 ISKLKSTYTDALQG-HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPVRSEEGRRIRE 696
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A G +L+ DY Q+ELRILAH+A+ ++ AF+ G D H+ TA M+
Sbjct: 697 AFVAPQGRALVSLDYSQIELRILAHMADISALKQAFRDGLDIHAMTASEMF 747
>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
Length = 925
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AFIA
Sbjct: 637 LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 688
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G L+ ADY Q+ELR+LAH A+ ++ +AF G D H+ TA M+
Sbjct: 689 SKGYLLLSADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMF 735
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 79/317 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P E+ +I K+ N +D V++ Y + + F DTM ++ Y+L
Sbjct: 396 LALLKPILENQAILKIGQNIKYDWLVMKQYNIVMRSFD-DTMLLS------------YAL 442
Query: 485 EA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
EA T ++SE ++ I+ KD L +G K+++ A
Sbjct: 443 EAGISTHGMDILSERWLGHKS--------------ITYKD------LTYNGR--KVNSFA 480
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
++ Q Y+A D+ TL+L++ LK +L+ + M Y+
Sbjct: 481 QIDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQRMTKIYERLD 522
Query: 603 QPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P EIL +ME G+LVDR+ LS + ++A+A ++ K N+ S
Sbjct: 523 RPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEK-------FNIASP 575
Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
QL +LFG G +K+ S + + E + AEG P K +R +T L
Sbjct: 576 KQLGDILFGKIGLPGGSKTKNGQWSTSAQTL------EELAAEGHILPRKIVNWRQLTKL 629
Query: 713 RSIGVD-LPTEMYTATG 728
+S D LP+ + TG
Sbjct: 630 KSTYTDALPSYILPKTG 646
>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
Length = 930
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAF+ GN + ADY
Sbjct: 649 INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 709 QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQ 754
>gi|424897758|ref|ZP_18321332.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393181985|gb|EJC82024.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 1075
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY
Sbjct: 789 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 848
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A + AF+ G D H+ TA M+
Sbjct: 849 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF 883
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED ++ KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 541 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 596
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 597 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 624
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 625 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLT------------AAGLTSVYE 667
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 668 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 718
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 719 --NIGSPKQLGDILFG 732
>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
Length = 900
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ K GRVH S + TGRLS+ PNLQN P ++ +IR+AF+A PG+ ++ ADY
Sbjct: 620 IDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEGRRIREAFVAEPGHKILAADYS 679
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ ++++ AFK G D H TA ++ + VE+ Q
Sbjct: 680 QIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDEVESEQ 725
>gi|410641005|ref|ZP_11351530.1| DNA polymerase I [Glaciecola chathamensis S18K6]
gi|410139365|dbj|GAC09717.1| DNA polymerase I [Glaciecola chathamensis S18K6]
Length = 876
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + T TGRLS+ PNLQN P + ++RQAFI PG ++ ADY
Sbjct: 595 INQRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYS 654
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF G D H+ TA ++
Sbjct: 655 QIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVF 689
>gi|383644165|ref|ZP_09956571.1| DNA polymerase I [Sphingomonas elodea ATCC 31461]
Length = 918
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ + ++ + GRVH S ++ +TGRLS+ PNLQN P + +IR
Sbjct: 622 LSKLKSTYTDALQ-AQINPQTGRVHTSYSLTGAQTGRLSSTDPNLQNIPIRTEVGRQIRD 680
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PGN ++ ADY Q+ELR+ AH+A+ ++ AF+ G D HS TAM ++
Sbjct: 681 AFVAEPGNVILSADYSQIELRLAAHIADVPALRTAFENGDDIHSMTAMELF 731
>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5]
gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5]
Length = 928
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + T TGRLS+ PNLQN P + ++RQAFI PG ++ ADY
Sbjct: 647 INQRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF G D H+ TA ++
Sbjct: 707 QIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVF 741
>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
Length = 940
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 6/110 (5%)
Query: 800 SIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYK 856
S+ LI + LPL +S + GR+H S N T TGRLS+ PNLQN PA +
Sbjct: 643 SVSKLIGTYTEKLPLL---ISKRTGRIHTSFNQAGTTTGRLSSSDPNLQNIPARTHEGKL 699
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
IR+AFIA G +L+ ADY Q+ELR++AH+A +++ AFK G D H TA
Sbjct: 700 IRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGYDIHKATA 749
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK-VSGFHADTMHMARLWDS 474
D+ + AP F DP IKK+ HN FD VL GL V G +ADTM MA L DS
Sbjct: 406 DVFAKLAPVFADPKIKKIGHNVKFDLLVLYFAGLSAVKGVYADTMLMAHLLDS 458
>gi|410647438|ref|ZP_11357870.1| DNA polymerase I [Glaciecola agarilytica NO2]
gi|410133028|dbj|GAC06269.1| DNA polymerase I [Glaciecola agarilytica NO2]
Length = 928
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + T TGRLS+ PNLQN P + ++RQAFI PG ++ ADY
Sbjct: 647 INQRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF G D H+ TA ++
Sbjct: 707 QIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVF 741
>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
Length = 944
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ +S + GRVH S ++ +T TGRLS+ PNL N P ++ KIR+AF+A PG LI AD
Sbjct: 658 AAISEQTGRVHTSFSLASTTTGRLSSSDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISAD 717
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 718 YSQIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMF 754
>gi|410859668|ref|YP_006974902.1| DNA polymerase I [Alteromonas macleodii AltDE1]
gi|410816930|gb|AFV83547.1| DNA polymerase I [Alteromonas macleodii AltDE1]
Length = 930
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAF+ GN + ADY
Sbjct: 649 INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 709 QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQ 754
>gi|389775724|ref|ZP_10193589.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
gi|388436965|gb|EIL93791.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
Length = 920
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T +EA EA L + + L S + L G V+ + GRVH S + + T
Sbjct: 601 STNEEALEAIAETHELPRLILDYRGLAKLRSTYTDKLSGI-VNPRTGRVHTSYHQGSVAT 659
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ +IRQAFIA PG ++ ADY Q+ELRI+AHL+ + +L A
Sbjct: 660 GRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWKVMAADYSQIELRIMAHLSGDEGLLRA 719
Query: 895 FKAGGDFHSRTAMNMY 910
F +GGD H TA ++
Sbjct: 720 FHSGGDVHRATAAEVF 735
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 77/319 (24%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDL-- 416
W+ + L+ A DTE ID + +++ S+ P GK+C ++ L
Sbjct: 335 WLEKLRGAELI-AFDTETTSIDAMR------ADIVGISLAVEP------GKAC-YIPLGH 380
Query: 417 -LDGGGRDL-----LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
G + L L P FEDPS K+ + +D ++L +YG+ V G D+M +
Sbjct: 381 DYPGAPKQLDREEVLAALKPVFEDPSRPKLGQHAKYDINILAHYGIAVQGLAHDSMLESY 440
Query: 471 LWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLK 530
+W++ T R M K Y G +K
Sbjct: 441 VWNA-------------TATRHDMDSLAKKY----------------------LGYETIK 465
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+ AGK + ++ + + Y+A D+ TL+L+ +L KL + VP
Sbjct: 466 YEQVAGKGAKQISFSQV---DLDTACRYAAEDADITLRLHHALWPKL---------ESVP 513
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
S+ D Y++ P +L +ME G+L+D + L R Q+ +
Sbjct: 514 --SLRDVYRDIEIPLVPVLAEMERRGVLIDGDELR------RQSQQLGKRMLELQQQSYA 565
Query: 651 PDAKYMNVGSDTQLRQLLF 669
+ N+ S QL+ +LF
Sbjct: 566 LAGREFNLDSPKQLQAVLF 584
>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
KLH11]
gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
KLH11]
Length = 933
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ GRVH S +I TGRL++ PNLQN P ++ +IR
Sbjct: 637 LSKLKSTYTDALQ-THINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRG 695
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA PGN L+ DY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 696 AFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMF 746
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 57/245 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P FED SI K+ N +D + YG+ V DTM M+ + G+ +
Sbjct: 408 LTLLKPVFEDSSILKIGQNMKYDAKIFARYGVNVVPID-DTMLMSYAMHGGKH---GHGM 463
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
+ L+ + +S I +K + G K SA + P+
Sbjct: 464 DTLS--ERYLSHTP-------------------IPIKPLLGSGK-----SAITFDKV-PI 496
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+E +Y+A D+ TL+L+K K +L ++ + Y+ +P
Sbjct: 497 DEAT--------AYAAEDADITLRLWKLFKPQLHQVQ------------VTTVYETLERP 536
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
+L +ME G+ VDR+ LS + A A++ A + A H + NVGS QL
Sbjct: 537 LVPVLAEMEMNGIKVDRDVLSRMSN-AFAQKMAGLE-----AEIHELAGENFNVGSPAQL 590
Query: 665 RQLLF 669
++LF
Sbjct: 591 GEILF 595
>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 896
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L E S+ L S + L G V+ + GRVH S + TGRLS+ PNLQN P ++
Sbjct: 595 LLEYRSLSKLKSTYTDKLPGM-VNPQTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRTEE 653
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IRQAFIA G ++ ADY Q+ELRI+AHL++ S+L AFK G D H TA ++
Sbjct: 654 GRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATAAEVF 710
>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
Length = 892
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V GRVH S N T TGRLS+ PNLQN P ++ IR+AFIA PG+ ++ ADY
Sbjct: 612 VDPATGRVHTSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYS 671
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA---MNMYPHI 913
Q+ELR+LAHL+ + + +AF AG D H RTA M+P +
Sbjct: 672 QIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFGMFPEL 712
>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
Length = 968
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + K GR+H + ++ T TGRLS+ PNLQN P + KIR AFIA G+ L+ AD
Sbjct: 682 SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 742 YSQIELRILAHIADIIALKEAFAQGQDIHAITASQMF 778
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 128/317 (40%), Gaps = 73/317 (23%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
R L P ED ++ K+ N +D V++ YG+ + F DTM ++ D+
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIRCFD-DTMLLSYALDAG------ 488
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
ALT + +SE ++ I+ KD+ K KI++
Sbjct: 489 ----ALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
A V+ Q Y+A D+ TL+L++ LK +L+ + M Y+
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P E+L KME G+LVDR+ L R E A F + + N+ S
Sbjct: 565 DRPLVEVLAKMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNLASP 618
Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
QL +LFG G +K S + + E + AEG P K +R + L
Sbjct: 619 KQLGGILFGKMSLPGGTRTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672
Query: 713 RSIGVD-LPTEMYTATG 728
+S D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689
>gi|393723094|ref|ZP_10343021.1| DNA polymerase I [Sphingomonas sp. PAMC 26605]
Length = 918
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ + ++ GRVH S ++ +TGRLS+ PNLQN P + +IR
Sbjct: 622 LSKLKSTYTDALQ-AQINPATGRVHTSYSLTGAQTGRLSSTDPNLQNIPIRTEIGRQIRD 680
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PGN L+ ADY Q+ELR+ AH+A+ ++ AF G D HS TAM ++
Sbjct: 681 AFVAEPGNVLLAADYSQIELRLAAHMADVPALKAAFANGDDIHSLTAMELF 731
>gi|408792976|ref|ZP_11204586.1| DNA-directed DNA polymerase [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408464386|gb|EKJ88111.1| DNA-directed DNA polymerase [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 939
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 14/150 (9%)
Query: 779 FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
++T+ E+ I L E+ L S + L + ++ K GR+H S N
Sbjct: 618 YSTDHSVLESLQGTHPIIDDLLEIRKFSKLKSTYTDTLP-TLINPKTGRIHTSYNQTIAA 676
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +R+ FIA G ++ DY Q+ELRI+AH AN M+D
Sbjct: 677 TGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGFEILSLDYSQIELRIMAHFANDPQMMD 736
Query: 894 AFKAGGDFHSRTAMNMY--------PHIRN 915
A+K+G D H RTA ++ P +RN
Sbjct: 737 AYKSGVDIHKRTAAGIFGVPEDKVTPDMRN 766
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 35/296 (11%)
Query: 205 GAVGGHPKNHPGSVMAVTKQVTGSEEKSEDFVNDQI---PLDKMTN---MECLRYEKEVA 258
G +G N PG V V ++ G+ + ++F N + LD++ N ++ L +KE A
Sbjct: 184 GLLGDASDNIPG-VKGVGEK--GAAKLIQEFGNLETIYKKLDQVKNKSLIDKLAADKENA 240
Query: 259 EYQERKGATVLTVPNLSDFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPKNDAAEGTG- 317
+ RK AT++T L D + ++++ +Y P K+ FK D A+ G
Sbjct: 241 -FLSRKLATIVTNLKL-DIKKNDLKL----PNYHEPAKVQYFKDEGYNVLHRDLAKQAGI 294
Query: 318 --QNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHL--VHACD 373
+ S+++++EK + K ++ +V+ + + K + YK + +
Sbjct: 295 PIASDGDSKDKSAEKEPTKKGKKST--KDVVDAETENKPNKGSAVTKKNYKRIQTLDELK 352
Query: 374 TEVAKIDVKQETPVDH---------GEVICFSIYSGPEADFGNGKS---CIWVDLLDGGG 421
VAK+D K+ VD E++ S P + S I+ LL
Sbjct: 353 KIVAKLDPKKPISVDTETTSQDPMLAELLGLSFSQEPGVGYYIAFSHPESIYSHLLPSP- 411
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
+ L P D KKV N +D VL NYG++++G H DTM + L + R
Sbjct: 412 EEGLGVLKPMLSDSKWKKVGQNIKYDLLVLRNYGVELAGIHFDTMLASYLLNPGER 467
>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
Length = 936
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY
Sbjct: 655 INAQTGRVHTSYHQAVTVTGRLSSSDPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYS 714
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +L+AF G D H TA ++ + V T Q
Sbjct: 715 QIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQ 760
>gi|402308918|ref|ZP_10827920.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
gi|400374497|gb|EJP27415.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
Length = 920
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
Q+ R I + + L+S ++ L ++ + GR+H S N T TGRLS+
Sbjct: 607 QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P + D +IR+ FI PG ADY Q+ELRI+AHL+ ++M++AF+ G D
Sbjct: 666 PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725
Query: 902 HSRTAMNMY 910
H+ TA ++
Sbjct: 726 HAATAARIW 734
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 87/243 (35%), Gaps = 56/243 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
F P +EDP I KV N +D VL +YG++V+G DTM L R Y E
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
G R V E+ + ++ M +S DI+
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
Y+ D+ TL+L L+ KL E L +++ P
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDEAGVTL------------LFRDIEMPLVG 526
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L ME G+ +D E L E +V A + A + N+ S Q+ +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580
Query: 668 LFG 670
LFG
Sbjct: 581 LFG 583
>gi|389799363|ref|ZP_10202358.1| DNA polymerase I [Rhodanobacter sp. 116-2]
gi|388442780|gb|EIL98947.1| DNA polymerase I [Rhodanobacter sp. 116-2]
Length = 916
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNINT-ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + + TGR+S+ PNLQN P ++ +IRQAFIA PG ++ ADY
Sbjct: 637 VNPRTGRVHTSYHQGSVATGRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWRVMAADYS 696
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF+ GGD H TA ++
Sbjct: 697 QIELRIMAHLSGDEGLLKAFREGGDVHRATAAEVF 731
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 55/247 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D+L P FED + K+ + +D ++L +YG+ V G D+M + +W++ T +
Sbjct: 389 DVLRALKPIFEDATRPKLGQHAKYDINILSHYGIAVQGLKHDSMLESYVWNA---TATRH 445
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+++L +K + D Y+ KG +IS +
Sbjct: 446 DMDSLA--KKYLGYDTVKYEDVAGKGAR------QISFSQV------------------- 478
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E + Y+A D+ TL+L+ +L KL + VP ++ Y+E
Sbjct: 479 --------ELDTACRYAAEDADVTLRLHHALWPKL---------ESVP--ALRRVYEEIE 519
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P +L +ME G+L+D + L R Q+ + + N+ S
Sbjct: 520 IPLVPVLAEMERRGVLIDGDELR------RQSQQLGRRMLELQQQSYALAGREFNLDSPK 573
Query: 663 QLRQLLF 669
QL+ +LF
Sbjct: 574 QLQAVLF 580
>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
Length = 610
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 287 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 340
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 341 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 400
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 401 SGDQGLINAFSQGKDIHRSTAAEIF 425
>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus DSM 785]
gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus DSM 785]
Length = 953
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVH 825
T GAV S N + + + ++ + + L S ++ L ++ + GRVH
Sbjct: 614 TRSGGAVYSVNAETLEDLQTHDQSGIVAMILRYRRLSKLKSTYVDALI-ELINQQTGRVH 672
Query: 826 CSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
I ETGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ ADY Q+ELR+LAH
Sbjct: 673 TQYRQIGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQIELRVLAH 732
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
+ ++++ FK G D H+ TA ++
Sbjct: 733 ITADPALVEVFKTGQDIHAATAARLF 758
>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
Length = 979
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GR+H C +T TGRL++ PNLQN P +D KIR AF+A GN LI ADY
Sbjct: 695 INPETGRIHTCYSLASTSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYS 754
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ +++ AF G D H+ TA M+
Sbjct: 755 QIELRLLAHIADIEALKKAFAEGLDIHAMTASEMF 789
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 103/270 (38%), Gaps = 79/270 (29%)
Query: 414 VDLLDGGG------RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
+D D GG ++ + P EDPSI K+ N FD VL +G+++ G DTM
Sbjct: 433 LDFADAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQHGIQLKGLD-DTML 491
Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
M+ D+ G L L K IS ++ G+
Sbjct: 492 MSYALDAGVHGHGMDELSELHLGHK------------------------PISFAEVAGK- 526
Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
G A PV+ +Y+A D+ TL+L+ LK +L+
Sbjct: 527 -----GKAQITFDQVPVDR--------ATAYAAEDADVTLRLWHILKPRLV--------- 564
Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEA---AV 639
+ Y+ +P +L +ME G+ VD+ L+ + +K+A+ E E A
Sbjct: 565 ---AERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFSQKMAQYEDEIYELAG 621
Query: 640 NRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
RF N+GS QL ++LF
Sbjct: 622 ERF--------------NIGSPKQLGEILF 637
>gi|340027381|ref|ZP_08663444.1| DNA polymerase I [Paracoccus sp. TRP]
Length = 944
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+V+ + GRVH S +I +TGRL++ PNLQN P ++ +IR+AFIA PG L+ DY
Sbjct: 662 HVNPETGRVHTSYSIAGAQTGRLASTDPNLQNIPVRTEEGRRIREAFIAGPGMRLVSLDY 721
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A ++ AF+ G D H+ TA M+
Sbjct: 722 SQIELRILAHVARIPALKQAFRDGIDIHAMTASQMF 757
>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
Length = 933
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ GRVH S I TGRL++ PNLQN P ++ +IR+
Sbjct: 637 LSKLKSTYTDALQ-THINPDTGRVHTSYAITGANTGRLASTDPNLQNIPVRTEEGRRIRE 695
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PGN L+ DY Q+ELRILAH+A+ ++ AF G D H+ TA M+
Sbjct: 696 AFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMF 746
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 61/247 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P EDPSI K+ N +D + YG+ V+ DTM M+ + E G+ +
Sbjct: 408 LKLLKPVLEDPSILKIGQNMKYDAKIFARYGVDVAPID-DTMLMSYAMHAG---EHGHGM 463
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIA 542
+ L+ E ++G I +K + G K SA +
Sbjct: 464 DTLS-----------------------ERYLGHTPIPIKPLLGSGK-----SAITFDKV- 494
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P++E +Y+A D+ TL+L+K K +L + + Y+
Sbjct: 495 PIDEAT--------AYAAEDADITLRLWKLFKPQLHRVQ------------VTTVYETLE 534
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
+P +L +ME G+ VDR+ LS + A A++ AA+ A H + NVGS
Sbjct: 535 RPLVPVLAQMEMHGIKVDRDVLSRMSN-AFAQKMAALE-----AEIHELAGETFNVGSPA 588
Query: 663 QLRQLLF 669
QL ++LF
Sbjct: 589 QLGEILF 595
>gi|407681925|ref|YP_006797099.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
gi|407243536|gb|AFT72722.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
Length = 930
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ ++RQAF+ GN + ADY
Sbjct: 649 INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 709 QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQ 754
>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
gi|345510829|ref|ZP_08790389.1| hypothetical protein BSAG_04973 [Bacteroides sp. D1]
gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
gi|345454316|gb|EGX26147.1| hypothetical protein BSAG_04973 [Bacteroides sp. D1]
Length = 949
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF + D H+ TA +Y
Sbjct: 745 IDAFLSNHDIHAATAAKIY 763
>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
Length = 933
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ + GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 648 LPLM---VNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRK 704
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 705 VLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 746
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 78/354 (22%)
Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
AS ++E+ E+ + + + YS ++ D + W + K + A DTE ++
Sbjct: 314 ASTQTSTEEDELPKQDIKTEYSTILTHDELDE-----W-IDKLSKAELFAVDTETTSLNY 367
Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSI 437
+ V + F++ +G A + D LD + + L + P E+P I
Sbjct: 368 MEAKLVG----LSFAVEAGKAAYL-----PLAHDYLDAPQQLNQAEALAKLKPLLENPEI 418
Query: 438 KKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
KKV N +D +L N G+K+ G DTM + +++S
Sbjct: 419 KKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVA--------------------- 457
Query: 498 KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWIS 557
SK N D+ +++K G + + + AGK + ++ E+
Sbjct: 458 --------SKHNMDD-----LALK-YLGHKNISFEEIAGKGAKQLTFNQIS---LEVAAP 500
Query: 558 YSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEG 616
Y+A D+ TL+L++ L W +L +P + + E P ++L ME +G
Sbjct: 501 YAAEDADITLRLHQHL--------WPRLQKEP----ELASIFTEIELPLVQVLSDMERQG 548
Query: 617 MLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
+L+D L + E++AR ++ + A + ++ N+ S QL+ L F
Sbjct: 549 VLIDSMLLGQQSEELAR-----TIDELEQKAYEIAGES--FNLSSPKQLQVLFF 595
>gi|440225073|ref|YP_007332164.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
gi|440036584|gb|AGB69618.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
Length = 1010
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ AD
Sbjct: 722 SYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSAD 781
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + AF+ G D H+ TA M+
Sbjct: 782 YSQIELRVLAHVADIPQLKQAFEDGIDIHAMTASEMF 818
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 93/370 (25%)
Query: 327 NSEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKID 380
+E ++ +++ ASF +S + + +++ + W+ + +V A DTE +D
Sbjct: 365 TTEPEDLAKARAASFASAPIDHSKYVTIRDIATLDR--WIADARETGIV-AFDTETTSLD 421
Query: 381 VKQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------R 422
V Q E++ FS+ + +G S +V L G R
Sbjct: 422 VMQ------AEIVGFSLAIADNRNDPSGSSIRAAYVPLAHKTGIGDLLGGGLADNQIPLR 475
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L ED SI K+ N +D +++ YG++ F DTM ++ + D G
Sbjct: 476 DALARLKDLLEDASILKIAQNLKYDYLLMKRYGIETRSFD-DTMLLSYVLDGGANATHG- 533
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
+++L+ E ++G I+ KD+ G +GK +
Sbjct: 534 -MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNV 560
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ ++ R +Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 561 TFDLVDIDRAT-----AYAAEDADVTLRLWLVLKPRL------------AAEKLSVVYER 603
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
+P +L ME G+ +DR+ LS + Q AA + H ++ N+GS
Sbjct: 604 LERPLVPVLAHMEERGITIDRQILSRLS--GELAQGAAALEDEIY---HLAGERF-NIGS 657
Query: 661 DTQLRQLLFG 670
QL +LFG
Sbjct: 658 PKQLGDILFG 667
>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
Length = 949
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF + D H+ TA +Y
Sbjct: 745 IDAFLSNHDIHAATAAKIY 763
>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
Length = 939
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
Q A + + + + E S+ L S + LP Q ++ + GRVH S TGRLS+
Sbjct: 626 QLAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQ---INQQTGRVHTSYQQAVASTGRLSS 682
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P + +IRQAFIA PG L+ +DY Q+ELRI+AHL+ S+L AF G
Sbjct: 683 TEPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGK 742
Query: 900 DFHSRTAMNMY 910
D H TA ++
Sbjct: 743 DIHQATAAEIF 753
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 65/253 (25%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
+++L + P E+P+IKKV N+ +D H+ +N G++V G DTM + ++S
Sbjct: 409 QEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGIEVQGMAYDTMLESYCFNS------- 461
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
R M + Y + I KDI G K +K + ++ T
Sbjct: 462 ------VATRHNMDDLALTYLNHST-----------IHFKDIAGTGKKQKTFNQIELETA 504
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
+P Y+A D+ TL+L+++L KL +P +++ ++E
Sbjct: 505 SP--------------YAAEDADITLQLHQTLLPKL-------QAEP----TLYKVFEEI 539
Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKYM 656
P +L KME G+L+DR+ L++ +K+ EQ+A H
Sbjct: 540 EMPLMPVLAKMERNGVLIDRQMLADQSYELGQKLTELEQKA-----------HLIAGTPF 588
Query: 657 NVGSDTQLRQLLF 669
N+ S QL+++LF
Sbjct: 589 NLNSSKQLQEVLF 601
>gi|424873127|ref|ZP_18296789.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393168828|gb|EJC68875.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 999
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 779 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 807
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L ED S+ KV N +D +++ YG++ F DTM ++ + D+ G +
Sbjct: 466 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 521
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E F+G I KD+ G +GK +
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 549
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 550 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 592
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 593 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 642
Query: 656 MNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 643 -NIGSPKQLGDILFG 656
>gi|336403556|ref|ZP_08584270.1| hypothetical protein HMPREF0127_01583 [Bacteroides sp. 1_1_30]
gi|335945669|gb|EGN07477.1| hypothetical protein HMPREF0127_01583 [Bacteroides sp. 1_1_30]
Length = 949
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF + D H+ TA +Y
Sbjct: 745 IDAFLSNHDIHAATAAKIY 763
>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
Length = 924
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ AD
Sbjct: 642 NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSAD 701
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LA +AN ++ +AF G D H+RTA ++
Sbjct: 702 YSQIELRLLADVANIPALREAFALGQDIHARTASEVF 738
>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
Length = 920
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
Q+ R I + + L+S ++ L ++ + GR+H S N T TGRLS+
Sbjct: 607 QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P + D +IR+ FI PG ADY Q+ELRI+AHL+ ++M++AF+ G D
Sbjct: 666 PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725
Query: 902 HSRTAMNMY 910
H+ TA ++
Sbjct: 726 HAATAARIW 734
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 87/243 (35%), Gaps = 56/243 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
F P +EDP I KV N +D VL +YG++V+G DTM L R Y E
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
G R V E+ + ++ M +S DI+
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
Y+ D+ TL+L L+ KL E + +++ P
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFRDIEMPLVG 526
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L ME G+ +D E L E +V A + A + N+ S Q+ +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580
Query: 668 LFG 670
LFG
Sbjct: 581 LFG 583
>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
Length = 976
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H S ++ +T TGRLS+ PNLQN P ++ IR AF+A G+SL+ ADY Q+EL
Sbjct: 696 QGRIHTSYSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIEL 755
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RILAH+A+ + +AF+ G D H+ TA M+
Sbjct: 756 RILAHIADIPQLKEAFREGLDIHAMTASEMF 786
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 61/251 (24%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P ED ++ K+ N +D V+ +G+ ++ F DTM ++ D+S + G+ ++ L+
Sbjct: 451 PVLEDDAVLKIGQNVKYDYLVMRRHGITMAPFD-DTMLISYALDASA-SLAGHGMDELS- 507
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
E F+G +S K++ G K + +A I +
Sbjct: 508 ----------------------ERFLGHKPMSYKELCGSGKGARPIAACAIDKVT----- 540
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
+Y+A D+ TL+L++ LK +L+ + + Y+ +P
Sbjct: 541 ---------AYAAEDADVTLRLWQVLKPRLV------------AEGLATVYERLERPLVA 579
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L +ME G+ VDR+ LS + +Q + A + N GS QL ++
Sbjct: 580 VLARMEERGIKVDRQILSRLSGRFAQKQAGLEAEIAEIA------GETFNPGSPKQLGEV 633
Query: 668 LFG--GKPNSK 676
LFG G P K
Sbjct: 634 LFGKLGLPGGK 644
>gi|419840236|ref|ZP_14363632.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
gi|386908057|gb|EIJ72756.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
Length = 935
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
++ + +++AF G D H TA ++
Sbjct: 726 SSDQGLINAFSQGKDIHRSTAAEIF 750
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 95/359 (26%)
Query: 323 SENENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKI 379
S EN+ K++I R+K + + + ++ ++AAK + A DTE +
Sbjct: 324 SAVENTPKIQIDRTKYETLLTQADLTRWIEKLNAAKLI-------------AVDTETDSL 370
Query: 380 DVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDP 435
D V I FS+ +G A + +D LD L P E+P
Sbjct: 371 DYMSANLVG----ISFSLENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENP 421
Query: 436 SIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMS 495
I K+ N FD+ + +G+++ G DTM ++ +S+ G ++++ L ++ +
Sbjct: 422 DIHKIGQNIKFDDSIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLG 475
Query: 496 EDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELW 555
+ A++ KG + +++ I P+E+
Sbjct: 476 HETIAFESIAGKGKS------QLTFNQI-------------------PLEQ--------A 502
Query: 556 ISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
Y+A D+ T+KL ++L W KL +P+ + + Y+ P +L +ME
Sbjct: 503 TEYAAEDADVTMKLQQAL--------WLKLQEEPM----LVELYKTMELPLLHVLSRMER 550
Query: 615 EGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
G+L+D + L +EI A +E A +A P N+ S QL+++LF
Sbjct: 551 TGVLIDSDALFIQSNEIAARLTALEEQA------YALAGQP----FNLASTKQLQEILF 599
>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
Length = 920
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
Q+ R I + + L+S ++ L ++ + GR+H S N T TGRLS+
Sbjct: 607 QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P + D +IR+ FI PG ADY Q+ELRI+AHL+ ++M++AF+ G D
Sbjct: 666 PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725
Query: 902 HSRTAMNMY 910
H+ TA ++
Sbjct: 726 HAATAARIW 734
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 85/243 (34%), Gaps = 56/243 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
F P +EDP I KV N +D VL +YG++V+G DTM L R Y E
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
G R V E+ + ++ M +S DI+
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
Y+ D+ TL+L L+ KL E + + + P
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFHDIEMPLVG 526
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L ME G+ +D E L E +V + A + N+ S Q+ +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTTIEQHIYELAGEQ------FNISSPRQVGDI 580
Query: 668 LFG 670
LFG
Sbjct: 581 LFG 583
>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
gi|378710795|ref|YP_005275689.1| DNA polymerase I [Shewanella baltica OS678]
gi|418022904|ref|ZP_12661890.1| DNA polymerase I [Shewanella baltica OS625]
gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
gi|353537906|gb|EHC07462.1| DNA polymerase I [Shewanella baltica OS625]
Length = 921
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH + + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 636 LPLM---VNAKTGRVHTNYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 693 ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF 734
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
L + P EDP +KKV N +D +L N G+K+ G DTM + +++S SR G
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+L+ L G+ + IS ++I G+ + + + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
P Y+A D+ TL+L++ L W K +MF E
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522
Query: 603 QPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P ++L +E +G+L+D L + +++AR ++ + A + N+GS
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575
Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
QL+ L F G P +K + P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599
>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA poyimerase I protein [Rhizobium
etli CFN 42]
Length = 999
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 779 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 807
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 465 RDALPRLKALLEDESVLKVAQNLKYDYLLMKRYGVETKSFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L +ME G+ VDR+ LS R E A R + + N+G
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 645
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 646 SPKQLGDILFG 656
>gi|373468008|ref|ZP_09559294.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371757046|gb|EHO45845.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 935
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIF 750
>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
Length = 928
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + +SG RVH S + T TGRLS+ PNLQN P + +IRQAF+A G
Sbjct: 643 LPLMINPLSG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGYR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF 741
>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
Length = 732
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 452 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 511
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 512 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 540
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 198 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 253
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +G+ +
Sbjct: 254 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 281
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 282 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 324
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L +ME G+ VDR+ LS R E A R + + N+G
Sbjct: 325 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 378
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 379 SPKQLGDILFG 389
>gi|441506550|ref|ZP_20988518.1| DNA polymerase I [Photobacterium sp. AK15]
gi|441425756|gb|ELR63250.1| DNA polymerase I [Photobacterium sp. AK15]
Length = 923
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPTGYKVLAVDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K+++DAFK G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALVDAFKHGKDIHAATA 732
>gi|384439822|ref|YP_005654546.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
gi|359290955|gb|AEV16472.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
Length = 833
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNL 844
REA ++ + E + L S +I PL + V + GR+H N T TGRLS+ PNL
Sbjct: 524 REAHPIVARILEYRELTKLKSTYIDPLP-ALVHPRTGRLHTRFNQTATATGRLSSSDPNL 582
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P +IR+AF+A G L+ DY Q+ELR+LAHL+ ++++ F+ G D H++
Sbjct: 583 QNIPVRTPLGQRIRRAFVAEEGWVLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQ 642
Query: 905 TAMNMY--------PHIRNAVET 919
TA M+ P +R A +T
Sbjct: 643 TASWMFGVPPEAVDPLMRRAAKT 665
>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
Length = 928
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S ++ T TGRLS+ PNLQN P ++ KIR AF+A PG L+ AD
Sbjct: 646 AQINPATGRVHTSYSLAATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSAD 705
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH+A + DAF G D H+ TA ++
Sbjct: 706 YSQIELRLVAHVAEIAGLRDAFAHGADIHAITASQVF 742
>gi|423214628|ref|ZP_17201156.1| DNA polymerase I [Bacteroides xylanisolvens CL03T12C04]
gi|392692534|gb|EIY85771.1| DNA polymerase I [Bacteroides xylanisolvens CL03T12C04]
Length = 960
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 639 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 695
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 696 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 755
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF + D H+ TA +Y
Sbjct: 756 IDAFLSNHDIHAATAAKIY 774
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 433 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGAVVKGPLFDTM 475
>gi|378697057|ref|YP_005179015.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
Length = 935
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIF 750
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 142/352 (40%), Gaps = 81/352 (23%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S EN+ K++I R+K + ++ A W+ L+ A DTE +D
Sbjct: 324 SAVENTPKIQIDRTKYETL---------LTQADLTRWIEKLNTAKLI-AVDTETDSLDYM 373
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIK 438
V I F++ +G A + +D LD L P E+P+I
Sbjct: 374 SANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENPNIH 424
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
K+ N FD + +G+++ G DTM ++ +S+ G ++++ L ++ + +
Sbjct: 425 KIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLGHET 478
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A++ KG + +++ I P+E+ Y
Sbjct: 479 IAFESLAGKGKS------QLTFNQI-------------------PLEQ--------ATEY 505
Query: 559 SAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGM 617
+A D+ T+KL ++L W KL +P ++ + Y+ P +L +ME G+
Sbjct: 506 AAEDADVTMKLQQAL--------WLKLQEEP----TLVELYKTMELPLLHVLSRMERTGV 553
Query: 618 LVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
L+D + L + E + + K A + + N+ S QL+++LF
Sbjct: 554 LIDSDALF----MQSNEIASRLTALEKQA--YALAGQPFNLASTKQLQEILF 599
>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
Length = 918
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ GRVH S + N TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 633 LPLM---VNATTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRK 689
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 690 ILAADYSQIELRIMAHLSQDAGLLTAFAEGKDIHKATAAEVF 731
>gi|365834656|ref|ZP_09376100.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
gi|364568931|gb|EHM46565.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
Length = 933
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
GA ++N ++ A + A + + + + E + L S + LP ++ GRVH S
Sbjct: 608 GAPSTNEEVLA--ELAEQGFELPTIILEHRGLAKLKSTYTDKLP---QMINPATGRVHTS 662
Query: 828 LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
+ T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL+
Sbjct: 663 YHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYKIVAADYSQIELRIMAHLS 722
Query: 887 NCKSMLDAFKAGGDFHSRTAMNMY 910
K +L AF AG D H TA ++
Sbjct: 723 GDKGLLTAFAAGKDIHRATAAEVF 746
>gi|12229815|sp|Q9S1G2.1|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
Length = 1016
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 824
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673
>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/395 (21%), Positives = 153/395 (38%), Gaps = 99/395 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
S ++ ++ K + + T Q++ A EN + K++I R+K + ++ A
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTR 345
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ L+ A DTE +D V I F++ +G A + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLDYLD 395
Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P E+P I K+ N FD + +G+++ G DTM ++ +S
Sbjct: 396 APKTLEKSTALAAIKPILENPDIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+ G ++++ L ++ + + A++ KG F
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESIAGKGKNQLTF-------------------- 489
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
P+E+ Y+A D+ T+KL ++L W KL +P +
Sbjct: 490 -----NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQQEP----T 524
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKH 649
+ + Y+ P +L +ME G+L+D L +EI A +E A +
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQA----------Y 574
Query: 650 CPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
+ N+ S QL+++LF D LPI
Sbjct: 575 ELAGQPFNLASTKQLQEILF--------DKLGLPI 601
>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
Length = 976
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 758 LAHVADIAQLKQAFADGIDIHAMTASEMF 786
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 88/319 (27%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
V A DTE +D Q E++ FS+ P + G G DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435
Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
G+ L+E ED S+ K+ N +D V+ +G+ F DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494
Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKK 531
+ G + ++ L+ E ++G I KD+ G
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
+GK + + +L R +Y+A D+ TL+L++ LK +L
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
+ + Y+ +P ++L ME G+ VDR+ LS + A + + A +
Sbjct: 563 EGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620
Query: 652 DAKYMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635
>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
Length = 1016
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 824
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 71/255 (27%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L ED SI KV N +D +++ YG++ F DTM ++ + D+ G +
Sbjct: 483 DALARLKALLEDESILKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E F+G I KD+ G +GK +
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 609
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659
Query: 656 MNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673
>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Cupriavidus metallidurans CH34]
Length = 934
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PGN ++ ADY
Sbjct: 654 VNPNTGRVHTSYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R AV + Q
Sbjct: 714 QIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQ 759
>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Magnetospirillum magnetotacticum MS-1]
Length = 926
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ KIR AF+A PG LI AD
Sbjct: 644 AQINPATGRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISAD 703
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH+A + + DAF G D H+ TA ++
Sbjct: 704 YSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVF 740
>gi|339007842|ref|ZP_08640416.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
gi|338775045|gb|EGP34574.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
Length = 897
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
+ GK GRVH N T TGRLS+ PNLQN P ++ KIR+AF+ N I+A DY
Sbjct: 616 IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH++ +++DAF D H+RTAM+++
Sbjct: 676 SQIELRILAHISKDPNLIDAFVNNMDIHTRTAMDVF 711
>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
Length = 943
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
RVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ ADY Q+EL
Sbjct: 667 TARVHTSFQMAITSTGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIEL 726
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+A+ ++ +AF G D H+RTA ++
Sbjct: 727 RLLAHVADIPALREAFALGQDIHARTASEVF 757
>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 156/383 (40%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ +++AK
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--APKIQIDRTKYETLLTQADLTRWIEKLNSAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF----------------- 489
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 490 --------NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY
Sbjct: 651 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 711 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 156/380 (41%), Gaps = 91/380 (23%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
S ++ ++ K + + T Q++ A EN + K++I R+K + ++ A
Sbjct: 297 SITQTTEQPVKINQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTH 345
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ L+ A DTE +D V I F++ +G A + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYISANLVG----ISFALENGEAAYL-----PLQLDYLD 395
Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P E+P+I K+ N FD + +G+++ G DTM ++ +S
Sbjct: 396 APKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESIAGKGKS------QLTFNQI----------- 492
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
P+E+ Y+A D+ T+KL ++L W KL +P +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP----T 524
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKH 649
+ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YALAG 578
Query: 650 CPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 579 QP----FNLASTKQLQEILF 594
>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Photobacterium angustum S14]
gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
Length = 923
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF+ G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALLDAFRHGKDIHAATA 732
>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
Length = 923
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF+ G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALLDAFRHGKDIHAATA 732
>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
Length = 935
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIF 750
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 143/359 (39%), Gaps = 95/359 (26%)
Query: 323 SENENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKI 379
S EN+ K++I R+K S + + ++ ++AAK + A DTE +
Sbjct: 324 SAVENTPKIQIDRTKYESLLTQADLTHWIEKLNAAKLI-------------AVDTETDSL 370
Query: 380 DVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDP 435
D V I F++ +G A + +D LD L P E+P
Sbjct: 371 DYMSANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENP 421
Query: 436 SIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMS 495
+I K+ N FD + +G+++ G DTM ++ +S+ G ++++ L ++ +
Sbjct: 422 NIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLG 475
Query: 496 EDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELW 555
+ A++ KG + F P+E+
Sbjct: 476 HETIAFESIAGKGKSQLTF-------------------------NQIPLEQ--------A 502
Query: 556 ISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
Y+A D+ T+KL ++L W KL +P ++ + Y+ P +L +ME
Sbjct: 503 TEYAAEDADVTMKLQQAL--------WLKLQEEP----TLVELYKTMELPLLHVLSRMER 550
Query: 615 EGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
G+L+D L +EI A +E A +A P N+ S QL+++LF
Sbjct: 551 TGVLIDSNALFMQSNEIATRLTALEEQA------YALAGQP----FNLASTKQLQEILF 599
>gi|410620668|ref|ZP_11331528.1| DNA polymerase I [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410159775|dbj|GAC26902.1| DNA polymerase I [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 932
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
+ GRVH S + T TGRLS+ PNLQN P + +RQAFIA PG ++ ADY Q+E
Sbjct: 654 RTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRTSEGRLVRQAFIARPGYKVVAADYSQIE 713
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ K ++ AF +G D HS TA ++
Sbjct: 714 LRIMAHLSKDKGLVSAFSSGKDIHSATAAEVF 745
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 24/138 (17%)
Query: 370 HACDTEVAKIDVKQETPVDHGEVICFSIYSG-------PEA-DFGNGKSCIWVDLLDGGG 421
+A DTE +D Q E++ FS +G P A D+ + D
Sbjct: 355 YALDTETTSVDYMQ------AELVGFSFATGENTACYIPVAHDYPGAPEQLKRD------ 402
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTE 479
D+L + P EDPS KK+ + +D +VL NYG+K+ G +DTM + + +S +R
Sbjct: 403 -DVLAQLKPILEDPSAKKIGQHIKYDKNVLANYGIKLQGILSDTMLASYVLNSVATRHNM 461
Query: 480 GGYSLEALTGDRKVMSED 497
SL+ L G + ED
Sbjct: 462 DSLSLKYL-GHNTIHFED 478
>gi|398845024|ref|ZP_10602071.1| DNA polymerase I [Pseudomonas sp. GM84]
gi|398253969|gb|EJN39079.1| DNA polymerase I [Pseudomonas sp. GM84]
Length = 915
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAF+A PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFVASPGYQLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
AV T Q
Sbjct: 733 LEAVTTDQ 740
>gi|424879511|ref|ZP_18303143.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
gi|392515874|gb|EIW40606.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
Length = 1016
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 824
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L ED S+ KV N +D +++ YG++ F DTM ++ + D+ G +
Sbjct: 483 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E F+G I KD+ G +GK +
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 609
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659
Query: 656 MNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673
>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 158/383 (41%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ +++AK
Sbjct: 297 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNSAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F +I ++
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF-NQIPLQ---------- 495
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
Q E Y+A D+ T+KL ++L W KL +P
Sbjct: 496 ----------------QATE------YAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
Length = 924
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 777 KIFATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN- 829
K+ +T Q+ E D + E + L SN++ LPL ++ GRVH + +
Sbjct: 602 KVISTAQDVLEELAAHNDVPRLVLEFRQLAKLKSNYVDSLPL----LADSQGRVHTTFHQ 657
Query: 830 INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCK 889
+ T TGRLS+ PNLQN P +IR AFIA PG L+ ADY Q+ELR++AH +
Sbjct: 658 VGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSEDP 717
Query: 890 SMLDAFKAGGDFHSRTAMNMY 910
+L+A+ G D H+ TA ++
Sbjct: 718 LLLNAYSTGQDIHTLTASEVF 738
>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
Length = 902
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQP 848
+ I L E + L S +I PL + K R+H S + T TGRLS++ PNLQN P
Sbjct: 599 EIIPYLLEYREVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTGTTTGRLSSKNPNLQNIP 658
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
KIR+AF+A G LI DY Q+ELR+LAH + +++AF D H +TA+
Sbjct: 659 TRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTAIA 718
Query: 909 MY-----PHIRNAVET 919
++ P RN +T
Sbjct: 719 LFGEEDAPLKRNVAKT 734
>gi|423204492|ref|ZP_17191048.1| DNA polymerase I [Aeromonas veronii AMC34]
gi|404626846|gb|EKB23654.1| DNA polymerase I [Aeromonas veronii AMC34]
Length = 921
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 596 KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 650 SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ K +L AF G D H TA ++ +AV T
Sbjct: 710 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTT 743
>gi|423203112|ref|ZP_17189690.1| DNA polymerase I [Aeromonas veronii AER39]
gi|404613755|gb|EKB10774.1| DNA polymerase I [Aeromonas veronii AER39]
Length = 921
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 596 KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 650 SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ K +L AF G D H TA ++ +AV T
Sbjct: 710 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTT 743
>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
Length = 993
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ RVH S + T TGRLS+ PNLQN P + KIR+AF+A PG++LI ADY
Sbjct: 709 VNKATNRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISADYS 768
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H++TA M+
Sbjct: 769 QIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMF 803
>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
Length = 936
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 68/114 (59%), Gaps = 9/114 (7%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL VS K R+H S + T TGRLS+ PNLQN P + KIRQAFIA +
Sbjct: 651 LPLM---VSDKTNRLHTSYHQAVTATGRLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHK 707
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
++ DY Q+ELRI+AHL+N K ++ AF G D H TA ++ AVE G+V
Sbjct: 708 IVAIDYSQIELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIF-----AVELGEV 756
>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 83/376 (22%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
S ++ ++ K + + T Q++ A EN + K++I R+K + ++ A
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTH 345
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ L+ A DTE +D V I F++ +G EA + + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYISANLVG----ISFALENG-EATY----LPLQLDYLD 395
Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P E+P+I K+ N FD + +G+++ G DTM ++ +S
Sbjct: 396 APKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI----------- 492
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
P+E+ Y+A D+ T+KL ++L W KL +P +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP----T 524
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
+ + Y+ P +L +ME G+L+D + L I+ A + A+ + + +A P
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQP-- 580
Query: 654 KYMNVGSDTQLRQLLF 669
N+ S QL+++LF
Sbjct: 581 --FNLASTKQLQEILF 594
>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
Length = 918
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K GRVH S + N TGRLS+ PNLQN P ++ +IR AFIA G
Sbjct: 633 LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKK 689
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 690 ILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVF 731
>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|386266417|ref|YP_005829909.1| DNA polymerase I [Haemophilus influenzae R2846]
gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 83/376 (22%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
S ++ ++ K + + T Q++ A EN + K++I R+K + ++ A
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTH 345
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ L+ A DTE +D V I F++ +G EA + + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYISANLVG----ISFALENG-EATY----LPLQLDYLD 395
Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P E+P+I K+ N FD + +G+++ G DTM ++ +S
Sbjct: 396 APKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI----------- 492
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
P+E+ Y+A D+ T+KL ++L W KL +P +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP----T 524
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
+ + Y+ P +L +ME G+L+D + L I+ A + A+ + + +A P
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQP-- 580
Query: 654 KYMNVGSDTQLRQLLF 669
N+ S QL+++LF
Sbjct: 581 --FNLASTKQLQEILF 594
>gi|430809178|ref|ZP_19436293.1| DNA polymerase I [Cupriavidus sp. HMR-1]
gi|429498322|gb|EKZ96832.1| DNA polymerase I [Cupriavidus sp. HMR-1]
Length = 934
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PGN ++ ADY
Sbjct: 654 VNPNTGRVHTSYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R AV + Q
Sbjct: 714 QIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVNSEQ 759
>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
Length = 921
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 769 KGAVASNNKIFAT-----EQEAREACDAI-SALCEVCSIDSLISNFILPLQGSNVSGKNG 822
KG + +++T E+ AR+ + I + E + L S + LQ + ++ K G
Sbjct: 587 KGGRKGKSGVYSTDVTELERLARDGGEEIVRKILEWRQLSKLKSTYTDALQ-AQINPKTG 645
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +TGRLS+ PNLQN P + ++R+AFIA G+ LI ADY Q+ELR+
Sbjct: 646 RVHTSYSLTGAQTGRLSSTEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRL 705
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
AH+A+ ++ DAF G D HS TA ++ +
Sbjct: 706 AAHMADVPALRDAFANGDDIHSLTAKELFGEV 737
>gi|190889822|ref|YP_001976364.1| DNA polymerase I [Rhizobium etli CIAT 652]
gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium
etli CIAT 652]
Length = 997
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 777 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 805
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L+ + Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLV------------AAGLTSVYE 589
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L +ME G+ VDR+ LS R E A R + + N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 644 SPKQLGDILFG 654
>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
Length = 928
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
++++ RVH S ++ T TGRLS+ PNLQN P + +IR+ FIA PG+ L+ AD
Sbjct: 642 AHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAAD 701
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+AN +S+ AF+ G D H+ TA ++
Sbjct: 702 YSQVELRLLAHIANVESLKQAFRDGTDIHAMTASEVF 738
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 59/254 (23%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P EDP++ K+ N+ +D VL YG+ V+ + DTM ++ + ++ G+ +
Sbjct: 399 LKVLKPLLEDPAVLKIGQNFKYDLGVLSRYGIDVAPYD-DTMLISYVMEAGLH---GHGM 454
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
+AL ++ G+T I K+I G K +I+
Sbjct: 455 DALA---------------ELHLGHT------CIPFKEICGTGK-------NQIT----F 482
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
+++ ++ L Y+A D+ TL+L++ LK L+ K M Y+ +P
Sbjct: 483 DKVPLDKATL---YAAEDADITLRLWEILKPALV------------AKKMATVYETLERP 527
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
++L KME G+ VD + L+ R + A H + NV S Q+
Sbjct: 528 MADVLSKMERVGIKVDPDQLN------RLSSDFGQKMMAAEAEAHEAAGRDFNVASPKQI 581
Query: 665 RQLLFG--GKPNSK 676
++LFG G P K
Sbjct: 582 GEILFGEMGLPGGK 595
>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
Length = 900
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V +GR+H C N T TGRLS+ PNLQN P + ++R+ F+A PG L+ ADY
Sbjct: 620 VIAPDGRIHTCFQNTVTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYS 679
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A ++M++ F +G D H+ TA ++
Sbjct: 680 QIELRLLAHMAGDQAMIEGFHSGADIHTITASQVF 714
>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
Length = 935
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIF 750
>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
gi|449111795|ref|ZP_21748364.1| DNA polymerase I [Treponema denticola ATCC 33521]
gi|449113398|ref|ZP_21749903.1| DNA polymerase I [Treponema denticola ATCC 35404]
gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
gi|448957066|gb|EMB37819.1| DNA polymerase I [Treponema denticola ATCC 33521]
gi|448959608|gb|EMB40327.1| DNA polymerase I [Treponema denticola ATCC 35404]
Length = 936
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 656 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 716 QIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIF 750
>gi|399041520|ref|ZP_10736575.1| DNA polymerase I [Rhizobium sp. CF122]
gi|398060290|gb|EJL52119.1| DNA polymerase I [Rhizobium sp. CF122]
Length = 999
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF G D H+ TA M+
Sbjct: 779 LAHVAEIPQLTQAFADGVDIHAMTASEMF 807
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED SI KV N +D +++ YG++ + F DTM ++ + D+ G
Sbjct: 465 RDALPRLKALLEDESILKVAQNLKYDYLLMKRYGVETTNFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I+ KD+ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADITLRLWLVLKPRL------------AAEKLTTVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L ME G+ VDR+ LS + A + K A +G
Sbjct: 592 RLERPLLPVLAHMEARGITVDRQILSRLSGDLAQGAAALEDEIYKLAGGR------FTIG 645
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 646 SPKQLGDILFG 656
>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
Length = 933
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+ PNLQN P + +IRQAFIA G
Sbjct: 648 LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPAGYR 704
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L+AF AG D H TA ++
Sbjct: 705 IVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVF 746
>gi|418464049|ref|ZP_13034991.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757390|gb|EHK91544.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 932
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 609 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 662
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 663 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 722
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 723 SNDQGLINAFAQGKDIHRSTAAEIF 747
>gi|417101705|ref|ZP_11960511.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium
etli CNPAF512]
gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium
etli CNPAF512]
Length = 997
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 777 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 805
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 589
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L +ME G+ VDR+ LS R E A R + + N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 644 SPKQLGDILFG 654
>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
Length = 930
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 83/376 (22%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
S ++ ++ K + + T Q++ A EN + K++I R+K + ++ A
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTH 345
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
W+ L+ A DTE +D V I F++ +G EA + + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYISANLVG----ISFALENG-EATY----LPLQLDYLD 395
Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P E+P+I K+ N FD + +G+++ G DTM ++ +S
Sbjct: 396 APKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455
Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
+ G ++++ L ++ + + A++ KG + +++ I
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI----------- 492
Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
P+E+ Y+A D+ T+KL ++L W KL +P +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP----T 524
Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
+ + Y+ P +L +ME G+L+D + L I+ A + A+ + + +A P
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQP-- 580
Query: 654 KYMNVGSDTQLRQLLF 669
N+ S QL+++LF
Sbjct: 581 --FNLASTKQLQEILF 594
>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
gi|386351608|ref|YP_006049856.1| DNA polymerase A [Rhodospirillum rubrum F11]
gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
gi|346720044|gb|AEO50059.1| DNA polymerase A [Rhodospirillum rubrum F11]
Length = 924
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ + + GRVH + + T TGRLS+ PNLQN P + KIR+AFIA PG+ LI AD
Sbjct: 635 AEIDERTGRVHTTYGLTVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISAD 694
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH+A ++ AF G D H+ TA ++
Sbjct: 695 YSQIELRLVAHVAGITALRQAFAEGKDIHAITASQVF 731
>gi|232010|sp|P30313.1|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
polymerase 1
gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
Length = 831
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + +I PL + V K GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPKTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+V DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 RDIHTQTASWMFGVSPEGVDPLMRRAAKT 663
>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
Length = 564
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 284 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 343
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 344 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 372
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 30 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 85
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 86 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 113
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 114 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 156
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L +ME G+ VDR+ LS R E A R + + N+G
Sbjct: 157 RLERPLLPVLARMEARGVTVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 210
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 211 SPKQLGDILFG 221
>gi|402490816|ref|ZP_10837605.1| DNA polymerase I [Rhizobium sp. CCGE 510]
gi|401810842|gb|EJT03215.1| DNA polymerase I [Rhizobium sp. CCGE 510]
Length = 999
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 779 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 807
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED ++ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 465 RDALPRLKALLEDGAVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF--------- 642
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656
>gi|417841860|ref|ZP_12487958.1| DNA polymerase I [Haemophilus haemolyticus M19501]
gi|341948234|gb|EGT74865.1| DNA polymerase I [Haemophilus haemolyticus M19501]
Length = 935
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIF 750
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 89/356 (25%)
Query: 323 SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
S EN+ K++I R+K Y ++ +++ W+ + L+ A DTE +D
Sbjct: 324 SAVENAPKIQIDRTK----YETLLTQTDLTR-----WIEKLNAEKLI-AVDTETDSLDYM 373
Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIK 438
V I F++ +G A + +D LD L P E+P I
Sbjct: 374 SANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENPDIH 424
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
K+ N FD + +G+++ G DTM ++ + +S+ G ++++ L ++ + +
Sbjct: 425 KIGQNIKFDESIFARHGIELQGVEFDTMLLSYMLNST----GRHNMDDLA--KRYLGHET 478
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
A++ KG G+++ I P+E+ Y
Sbjct: 479 IAFESIAGKGK------GQLTFNQI-------------------PLEQ--------ATEY 505
Query: 559 SAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGM 617
+A D+ T+KL ++L W KL +P ++ + Y+ P +L +ME G+
Sbjct: 506 AAEDADVTMKLQQAL--------WLKLQEEP----TLVELYETMELPLLHVLSRMERTGV 553
Query: 618 LVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
L+D + L +EI A +E A +A P N+ S QL+++LF
Sbjct: 554 LIDSDALFMQSNEIATRLTALEEQA------YALAGQP----FNLASTKQLQEILF 599
>gi|405377039|ref|ZP_11030987.1| DNA polymerase I [Rhizobium sp. CF142]
gi|397326463|gb|EJJ30780.1| DNA polymerase I [Rhizobium sp. CF142]
Length = 999
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISSPGHKLISADYSQIELRV 778
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A ++ AF+ G D H+ TA M+
Sbjct: 779 LAHVAEIPQLVRAFEDGIDIHAMTASEMF 807
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 61/250 (24%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L+ ED SI KV N +D +++ YG++ F DTM ++ + D+ G +
Sbjct: 466 DALSRLKALLEDESILKVAQNLKYDYLLMKRYGIETKSFD-DTMLISYVLDAG---TGAH 521
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E F+G I+ KD+ G +GK +
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSNV 549
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ +++R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 550 TFDLVDIERATH-----YAAEDADVTLRLWMVLKPRL------------AATQLTRVYER 592
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
+P +L +ME G+ VDR+ LS R E A R + + N+GS
Sbjct: 593 LERPLVPVLARMEARGITVDRQILS------RLSGELAQGAARYEDEIYQLAGERFNIGS 646
Query: 661 DTQLRQLLFG 670
QL +LFG
Sbjct: 647 PKQLGDILFG 656
>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
Length = 314
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY
Sbjct: 35 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYS 94
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 95 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 129
>gi|410584031|ref|ZP_11321136.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
gi|410504893|gb|EKP94403.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
Length = 1072
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 11/139 (7%)
Query: 779 FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNINT 832
++T+ E E A + E+ L ++ LQG+ V G +GR+H +
Sbjct: 746 YSTDAEVLETLAARHPIAELV----LEYRSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTV 801
Query: 833 E-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
TGRLS+ +PNLQN P ++ +R+AF+A PG+ L+ ADY Q+ELR+LAH + +
Sbjct: 802 AATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGL 861
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AF G D H+RTA ++
Sbjct: 862 VEAFAQGQDVHARTASEIF 880
>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
gi|418363147|ref|ZP_12963742.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
gi|356685587|gb|EHI50229.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 918
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 82/154 (53%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E ++ L S + LPL + + GRVH
Sbjct: 593 KGAPSTAEEVLA---ELAETYELPRLLMEHRTLAKLKSTYTDKLPLM---IKPQTGRVHT 646
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 647 SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ K +L AF G D H TA ++ +AV T
Sbjct: 707 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTT 740
>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
Length = 937
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSAR 840
E A E D + + + + L S + LQ ++ + GRVH S +I TGRL++
Sbjct: 622 EDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIHPETGRVHTSYSIAGANTGRLAST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A PG L+ DY Q+ELRILAH+A+ ++ AF+ G D
Sbjct: 681 DPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHD 740
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 741 IHAMTASEMF 750
>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 923
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF+ G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALLDAFRHGKDIHAATA 732
>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
gi|189433083|gb|EDV02068.1| DNA-directed DNA polymerase [Bacteroides coprocola DSM 17136]
Length = 954
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LPL ++ K G +H S N
Sbjct: 633 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INPKTGHIHTSFNQTV 689
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ M
Sbjct: 690 TATGRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 749
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AF+ G D H+ TA +Y
Sbjct: 750 IEAFQKGQDIHAATAAKIY 768
>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
Length = 935
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY
Sbjct: 656 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 716 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 750
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 144/359 (40%), Gaps = 95/359 (26%)
Query: 323 SENENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKI 379
S EN K++I R+K + + ++ ++AAK + A DTE +
Sbjct: 324 SAVENEPKIQIDRTKYEILLTQADLTCWIEKLNAAKLI-------------AVDTETDSL 370
Query: 380 DVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDP 435
D V I F++ +G A + +D LD L P E+P
Sbjct: 371 DYMSANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENP 421
Query: 436 SIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMS 495
I K+ N FD + +G+++ G DTM ++ +S+ G ++++ L ++ +
Sbjct: 422 DIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLG 475
Query: 496 EDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELW 555
+ A++ KG G+++ I P+E+
Sbjct: 476 HETIAFESIAGKGK------GQLTFNQI-------------------PLEQ--------A 502
Query: 556 ISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
Y+A D+ T+KL ++L W KL +P ++ + Y+ P +L +ME
Sbjct: 503 TEYAAEDADVTMKLQQAL--------WLKLQEEP----TLVELYKTMELPLLHVLSRMER 550
Query: 615 EGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
G+L+D + L +EI A ++ A +A P N+ S QL+++LF
Sbjct: 551 TGVLIDSDALFMQSNEIASRLTALEKQA------YALAGQP----FNLASTKQLQEILF 599
>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
Length = 928
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + ++G RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G+
Sbjct: 643 LPLMINPITG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHK 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVF 741
Score = 42.7 bits (99), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
+L P EDP++ KV N +D VL+NY +++ G DTM
Sbjct: 400 VLERLKPLLEDPALLKVGQNLKYDRGVLKNYDIELQGIKFDTM 442
>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
Length = 880
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 10/143 (6%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
++ R+ + I+ + E S+ L S ++ ++ V+ K+GR+H S N T TGR+S+
Sbjct: 567 EKLRDKHEIINMITEYRSVVKLKSTYVDGIEAL-VNAKDGRIHSSFNQTITTTGRISSTD 625
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PN+QN P +IR+ FIA SL+ ADY Q+ELR+LAH++ M++AF +G D
Sbjct: 626 PNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSGEDI 685
Query: 902 HSRTAMNMY--------PHIRNA 916
H +TA ++ P +R+A
Sbjct: 686 HRKTASQVFNVDFNQVTPELRSA 708
>gi|429207168|ref|ZP_19198427.1| DNA polymerase I [Rhodobacter sp. AKP1]
gi|428189543|gb|EKX58096.1| DNA polymerase I [Rhodobacter sp. AKP1]
Length = 937
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSAR 840
E A E D + + + + L S + LQ ++ + GRVH S +I TGRL++
Sbjct: 622 EDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIHPETGRVHTSYSIAGANTGRLAST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A PG L+ DY Q+ELRILAH+A+ ++ AF+ G D
Sbjct: 681 DPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHD 740
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 741 IHAMTASEMF 750
>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
Length = 937
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 656 VNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AFK G D H+ TA
Sbjct: 716 QIELRIMAHLSGDKALLEAFKQGKDIHAATA 746
>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
Length = 930
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V GK GRVH S + TGRLS+ PNLQN P ++ +IR AF+A G
Sbjct: 645 LPLM---VDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRK 701
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 702 ILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVF 743
>gi|374293801|ref|YP_005040824.1| DNA polymerase I [Azospirillum lipoferum 4B]
gi|357427204|emb|CBS90145.1| DNA polymerase I [Azospirillum lipoferum 4B]
Length = 971
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+S GRVH + + T TGRLS+ PNLQN P ++ KIR+AF+A PG+ L+ DY
Sbjct: 691 ISPVTGRVHTAFALAATNTGRLSSTDPNLQNIPVRTEEGKKIRRAFVASPGHKLLSVDYS 750
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR++A +AN +++ DAF+ G D H+ TA ++
Sbjct: 751 QIELRLVAEMANIQALKDAFRDGLDIHAATAAQVF 785
>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
gi|422337267|ref|ZP_16418238.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
gi|353345481|gb|EHB89773.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
Length = 985
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 662 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 715
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 716 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 775
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N +++AF G D H TA ++
Sbjct: 776 SNDAGLINAFAQGKDIHRSTAAELF 800
>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
Length = 937
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSAR 840
E A E D + + + + L S + LQ ++ + GRVH S +I TGRL++
Sbjct: 622 EDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIHPETGRVHTSYSIAGANTGRLAST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A PG L+ DY Q+ELRILAH+A+ ++ AF+ G D
Sbjct: 681 DPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHD 740
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 741 IHAMTASEMF 750
>gi|416052203|ref|ZP_11578105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992293|gb|EGY33702.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 933
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 610 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 664 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|342903660|ref|ZP_08725468.1| DNA polymerase I [Haemophilus haemolyticus M21621]
gi|341954911|gb|EGT81380.1| DNA polymerase I [Haemophilus haemolyticus M21621]
Length = 935
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY
Sbjct: 656 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 716 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 750
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 145/359 (40%), Gaps = 95/359 (26%)
Query: 323 SENENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKI 379
S EN+ K++I R+K + + + ++ ++AAK + A DTE +
Sbjct: 324 SAVENAPKIQIDRTKYETLLTQTDLTRWIEKLNAAKLI-------------AVDTETDSL 370
Query: 380 DVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDP 435
D V I F++ +G A + +D LD +L P E+P
Sbjct: 371 DYMSANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTVLATIKPILENP 421
Query: 436 SIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMS 495
I K+ N FD + +G+++ G DTM ++ +S+ G ++++ L ++ +
Sbjct: 422 DIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLG 475
Query: 496 EDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELW 555
+ ++ KG G+++ I P+E+
Sbjct: 476 HETIEFESIAGKGK------GQLTFNQI-------------------PLEQ--------A 502
Query: 556 ISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
Y+A D+ T+KL ++L W KL +P ++ Y+ P +L +ME
Sbjct: 503 TEYAAEDADVTMKLQQAL--------WLKLQEEP----TLVKLYKTMELPLLHVLSRMER 550
Query: 615 EGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
G+L+D + L +EI A +E A +A P N+ S QL+++LF
Sbjct: 551 TGVLIDSDALFMQSNEIATRLTALEEQA------YALAGQP----FNLASTKQLQEILF 599
>gi|338983099|ref|ZP_08632330.1| DNA polymerase I [Acidiphilium sp. PM]
gi|338207974|gb|EGO95880.1| DNA polymerase I [Acidiphilium sp. PM]
Length = 915
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P + +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641 RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ ++ ++F G D H+RTA ++
Sbjct: 701 LAHVADIPALKESFAKGEDIHARTAAEVF 729
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
A DTE ++ + H +++ S+ + P G++ ++ L G L L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEVGPQLPRPLAL 389
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
AP DPSI K++HN FD HVLE GL + DTM M+ + R G L
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449
Query: 486 ALTGDRKVMSEDK 498
AL D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462
>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
Length = 937
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSAR 840
E A E D + + + + L S + LQ ++ + GRVH S +I TGRL++
Sbjct: 622 EDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIHPETGRVHTSYSIAGANTGRLAST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A PG L+ DY Q+ELRILAH+A+ ++ AF+ G D
Sbjct: 681 DPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHD 740
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 741 IHAMTASEMF 750
>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
Length = 867
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNL 844
++A + + E + L S ++ PL ++ GR+H + N T TGRLS+ PNL
Sbjct: 559 KDAHPVVPLILEYRELAKLKSTYLDPLP-RLINPHTGRLHTTFNQTATATGRLSSANPNL 617
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P +IR+AF+A G +L+VADY Q+ELRILAH+ +++++ F+ G D H R
Sbjct: 618 QNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIHRR 677
Query: 905 TAMNMY 910
TA ++
Sbjct: 678 TAAQIF 683
>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
Length = 937
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSAR 840
E A E D + + + + L S + LQ ++ + GRVH S +I TGRL++
Sbjct: 622 EDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIHPETGRVHTSYSIAGANTGRLAST 680
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A PG L+ DY Q+ELRILAH+A+ ++ AF+ G D
Sbjct: 681 DPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHD 740
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 741 IHAMTASEMF 750
>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
Length = 915
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P + +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641 RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ ++ ++F G D H+RTA ++
Sbjct: 701 LAHVADIPALKESFAKGEDIHARTAAEVF 729
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
A DTE ++ + H +++ S+ + P G++ +V L G L L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YVPLGHEDGPQLPRPLAL 389
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
AP DPSI K++HN FD HVLE GL + DTM M+ + R G L
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449
Query: 486 ALTGDRKVMSEDK 498
AL D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462
>gi|359404893|ref|ZP_09197700.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
gi|357559871|gb|EHJ41298.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
Length = 878
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
Q+ R + + E + L+ ++ L ++ + G +H + N T TGRLS+
Sbjct: 565 QQLRSKAPIVDHILEHRGLKKLLGTYVDALP-KLINPRTGHIHTTFNQAVTATGRLSSSN 623
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P +D +IR+ FI PG ADY Q+ELR++AHL+ ++M++AF+ G D
Sbjct: 624 PNLQNIPVRGEDGKEIRKCFIPEPGQLFFSADYSQIELRVMAHLSGDENMIEAFREGYDI 683
Query: 902 HSRTAMNMYPHIRNAVETGQ 921
H+ TA +Y N+V Q
Sbjct: 684 HAATAARIYKEDINSVSRDQ 703
>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
Length = 875
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T+QE EA + I + +I L + +I + ++ ++G++H + +T
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGM--VDLIKEDGKIHTTFQQTIAQT 613
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ IR+AF+ GN L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614 GRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDA 673
Query: 895 FKAGGDFHSRTAMNMY 910
FK G D H +TA ++
Sbjct: 674 FKHGADIHRKTASEVF 689
>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
Length = 896
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 7/148 (4%)
Query: 769 KGAVASNNKIFATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
KG + + ++T+ ++ EA I L E L+S +I+ + V+ K GRV
Sbjct: 573 KGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKYQKLLSTYIIAIPKL-VNKKTGRV 631
Query: 825 HCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRIL 882
H S N T TGRLS+ PNLQN P E+D +IR A + +++ ADY Q+ELR+L
Sbjct: 632 HTSFNQTGTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVL 691
Query: 883 AHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AHL N +++++AF G D H+ TA ++
Sbjct: 692 AHLTNDETLINAFNNGEDIHALTAAAIF 719
>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
Length = 892
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P + +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 618 RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 677
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ ++ ++F G D H+RTA ++
Sbjct: 678 LAHVADIPALKESFAKGEDIHARTAAEVF 706
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
A DTE ++ + H +++ S+ + P G++ ++ L G L L
Sbjct: 320 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEDGPQLPRPLAL 366
Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
AP DPSI K++HN FD HVLE GL + DTM M+ + R G L
Sbjct: 367 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 426
Query: 486 ALTGDRKVMSEDK 498
AL D + +S D+
Sbjct: 427 ALHLDHRPISYDE 439
>gi|407892765|ref|ZP_11151795.1| DNA polymerase I [Diplorickettsia massiliensis 20B]
Length = 901
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ K GR+H S + TGRLS+ PNLQN P ++ KIR+AFIA PG LI ADY
Sbjct: 620 QINPKTGRIHTSYHQAAVVTGRLSSSDPNLQNIPIRHEEGRKIRKAFIAAPGYRLIAADY 679
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH + +L AF+ D H TA ++ +AV T Q
Sbjct: 680 SQIELRIMAHFSQDAGLLHAFQQNLDIHQATASEIFKTPLDAVTTEQ 726
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
+L + P E+P+++K+ H+ +D +VL N G+ + G DT+ + L DS+
Sbjct: 374 VLAQLKPLLENPTLQKIGHHLKYDMNVLANQGITLQGIAFDTLLESYLLDSA 425
>gi|423122885|ref|ZP_17110569.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
gi|376391819|gb|EHT04487.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
Length = 928
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPPDYL 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
Length = 930
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 607 KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G S++ ADY Q+ELRI+AHL
Sbjct: 661 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + ++ AF G D H TA ++
Sbjct: 721 SGDQGLISAFSQGKDIHRSTAAEIF 745
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 155/383 (40%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ +++AK
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNSAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+ K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNSHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF----------------- 489
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 490 --------NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>gi|335032839|ref|ZP_08526211.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
gi|333795515|gb|EGL66840.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
Length = 1001
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + + RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ AD
Sbjct: 715 SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 775 YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMF 811
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 164/416 (39%), Gaps = 131/416 (31%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
+W+ + +V A DTE +D Q E++ FS+ A NGK D+
Sbjct: 391 LWIAAAREAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIR 438
Query: 418 ---------DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVL 451
G G DL ++ APF ED ++ KV N +D ++
Sbjct: 439 AAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLHEDEAVLKVAQNLKYDYLLM 498
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
+ +G+ + F DTM ++ + ++ + T G +L
Sbjct: 499 KRHGVVMRSFD-DTMLISYVLEAGKTTHGMDTLS-------------------------- 531
Query: 512 EGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKL 569
E ++G I+ KD+ G +GK S ++ + +Y+A D+ TL+L
Sbjct: 532 ERWLGHTPIAYKDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRL 577
Query: 570 YKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-- 627
+ +LK +L+ + + Y+ +P +L ME G+ VDR+ LS +
Sbjct: 578 WMALKPRLV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSG 625
Query: 628 ---EKVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSK 676
+K A E+E A RF N+GS QL +LFG G +K
Sbjct: 626 ELAQKAASFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTK 671
Query: 677 DDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
S + + E + AEG + P K +R +T L+S D LP+ ++ T
Sbjct: 672 TGQWSTSAQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 721
>gi|398349463|ref|ZP_10534166.1| DNA polymerase I [Leptospira broomii str. 5399]
Length = 913
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
++T+ E E I L + LIS ++ L + VS K+GR+H + N+
Sbjct: 591 YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVETLP-TMVSAKDGRIHTNYNMTIAA 649
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSML 892
TGRLS+ PNLQN P EK+ IR+ FI+ + L+ DY Q+ELRI+AH++ +M+
Sbjct: 650 TGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFELLSLDYSQIELRIMAHVSGDPAMV 709
Query: 893 DAFKAGGDFHSRTAMNMY 910
DA+K G D H RTA +Y
Sbjct: 710 DAYKKGIDIHKRTASALY 727
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
P DPSI KV N +D VLEN+G +V DTM + + R ++++ L
Sbjct: 391 LGPVLSDPSIPKVGQNIKYDLIVLENHGFEVGNIVFDTMLASYILQPESRH---HNMDDL 447
Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
+++ YQ I D+ G K KK+ L
Sbjct: 448 -------AKELLNYQT--------------IHYSDLVGTGKNKKN--------------L 472
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
E E Y++ D+ TL+LY SL+K PV M Y+E P
Sbjct: 473 WEVELEKVSEYASEDADITLRLYNSLRK------------PVKDSGMESVYKEIDLPLIR 520
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L ME G+ +D EY +E+ K + E + V K+A + N+ S +L+++
Sbjct: 521 VLADMEKAGIAIDTEYFAELSKDFQREVKDLVRHIHKYAGRE------FNIASTKELQKV 574
Query: 668 LF 669
LF
Sbjct: 575 LF 576
>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
Length = 1013
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S V+ + GRVH S + T TGRLS+ PNLQN P + KIR+AFIA PG LI AD
Sbjct: 727 SYVNPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISAD 786
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + AF D H+ TA M+
Sbjct: 787 YSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMF 823
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 115/309 (37%), Gaps = 66/309 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIW--VDLLDG--GG 421
+ A DTE + +D Q V G +C + P G G ++ DL+ G
Sbjct: 423 IIAIDTETSSLDPMQAELV--GLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPGQLDS 480
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
+ L P E P + K+ N FD VL G++++ DT+ ++ + D+
Sbjct: 481 DETLARLKPMLEAPDVLKIAQNAKFDQLVLAQRGIRLAPVD-DTLLLSYVLDA------- 532
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
G TD G + + FG R ++ AG T
Sbjct: 533 --------------------------GRTDHGM--DVLAEKYFGHRPIQFGAVAGSGRTF 564
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
R + YSA D+ TL+L++ LK +L + M Y+
Sbjct: 565 I---GFARVALDKATEYSAEDADVTLRLWRVLKPRLA------------AERMSAVYETL 609
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P E L +ME G+ +DR LS R E A + R A + N+GS
Sbjct: 610 ERPMVETLARMERRGVSIDRAILS------RLSGEFAQDMARLEAVIFELAGESFNLGSP 663
Query: 662 TQLRQLLFG 670
QL +LFG
Sbjct: 664 KQLGDILFG 672
>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
Length = 922
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 641 VNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYS 700
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AFK G D H+ TA
Sbjct: 701 QIELRIMAHLSGDKALLEAFKQGKDIHAATA 731
>gi|406675197|ref|ZP_11082387.1| DNA polymerase I [Aeromonas veronii AMC35]
gi|404627967|gb|EKB24756.1| DNA polymerase I [Aeromonas veronii AMC35]
Length = 921
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 596 KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 650 SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ K +L AF G D H TA ++ +AV T
Sbjct: 710 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTT 743
>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Neptuniibacter caesariensis]
gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
Length = 922
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LPL ++ GR+H S + T TGRLS+ PNLQN P
Sbjct: 621 ILEHRSLSKLKSTYTDKLPLM---INPGTGRIHTSYHQAVTATGRLSSTDPNLQNIPVRT 677
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IR AFIA G ++ ADY Q+ELRI+AHL+ + +LDAF G D H TA ++
Sbjct: 678 QEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSKGADIHRATAAEVF 736
>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
Length = 832
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 517 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 576 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 636 RDIHTETASWMFGVPREAVD 655
>gi|444915846|ref|ZP_21235971.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
gi|444712840|gb|ELW53753.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
Length = 891
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 794 ALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
A+ E S+ L S ++ LP + K+GR+H + + T TGRLS+ PNLQN P
Sbjct: 590 AIIEYRSLSKLKSTYLDTLP----ELVTKDGRLHTTFHQAATATGRLSSSDPNLQNIPIR 645
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IR+AFIA G+ L+ ADY Q+ELR+LAH+A + +LDAF D HSRTA ++
Sbjct: 646 TELGMEIRRAFIADEGHQLVSADYSQIELRLLAHIAEDEVLLDAFARDEDIHSRTAAEVF 705
>gi|118828|sp|P19821.1|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
polymerase 1
gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
Length = 832
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 517 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 576 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 636 RDIHTETASWMFGVPREAVD 655
>gi|381190626|ref|ZP_09898144.1| DNA polymerase I [Thermus sp. RL]
gi|380451509|gb|EIA39115.1| DNA polymerase I [Thermus sp. RL]
Length = 831
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL G V + GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 663
>gi|443691221|gb|ELT93135.1| hypothetical protein CAPTEDRAFT_43589, partial [Capitella teleta]
Length = 739
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ +GR+H S + T TGRLS+ PNLQN P + ++RQAFIA G L+ ADY
Sbjct: 598 INAASGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTPEGRRVRQAFIAPRGYKLVAADYS 657
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +LDAF G D H TA ++
Sbjct: 658 QIELRIMAHLSKDKGLLDAFANGLDIHKATAAEVF 692
>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
Length = 832
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 517 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 576 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 636 RDIHTETASWMFGVPREAVD 655
>gi|373451725|ref|ZP_09543644.1| DNA polymerase I [Eubacterium sp. 3_1_31]
gi|371967946|gb|EHO85413.1| DNA polymerase I [Eubacterium sp. 3_1_31]
Length = 861
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+G++H N I T+TGRLS+ PNLQN ++ IR+AF+A G+ L+ ADY Q+EL
Sbjct: 585 DGKIHTLFNQIQTQTGRLSSSEPNLQNISVRNEEGKGIRKAFVASEGHVLLSADYSQIEL 644
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+A+ + M+DAF D H++TAM ++
Sbjct: 645 RMLAHMADEEQMIDAFNHDIDIHTKTAMQIF 675
>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
Length = 833
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 518 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 576
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 577 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 636
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 637 RDIHTETASWMFGVPREAVD 656
>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|387869289|ref|YP_005700758.1| DNA polymerase I [Edwardsiella tarda FL6-60]
gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
Length = 930
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G+ ++ ADY
Sbjct: 650 VNPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +L AF AG D H TA ++ AV Q
Sbjct: 710 QIELRIMAHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQ 755
>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
Length = 878
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
+A I ++ E ++ L S +I L+ + S +G+VH N T+TGRLS+ PNLQ
Sbjct: 569 DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626
Query: 846 NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
N P LE+ R IR+AF+ + G ++ ADY Q+ELRILAH++N +S+++AFK G D H
Sbjct: 627 NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685
Query: 904 RTAMNMY 910
+TAM+++
Sbjct: 686 KTAMDVF 692
>gi|374298760|ref|YP_005050399.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
Length = 882
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
GA ++ N + ++ R ++ + E ++ L S ++ PL ++ + GR+H + N
Sbjct: 560 GAQSTANPVL---EKLRNEHPVVADILEFRMLEKLRSTYLEPL--PKLADEQGRIHTTFN 614
Query: 830 -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
+ T TGRLS+ PNLQN P ++R F A PG L ADY Q+ELR+LAH++
Sbjct: 615 QLATATGRLSSSAPNLQNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQD 674
Query: 889 KSMLDAFKAGGDFHSRTA 906
++L+AF+ G D H+RTA
Sbjct: 675 PTLLEAFRHGQDIHARTA 692
>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
Length = 829
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 514 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 572
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 573 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 632
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 633 RDIHTETASWMFGVPREAVD 652
>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
Length = 878
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
+A I ++ E ++ L S +I L+ + S +G+VH N T+TGRLS+ PNLQ
Sbjct: 569 DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626
Query: 846 NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
N P LE+ R IR+AF+ + G ++ ADY Q+ELRILAH++N +S+++AFK G D H
Sbjct: 627 NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685
Query: 904 RTAMNMY 910
+TAM+++
Sbjct: 686 KTAMDVF 692
>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
Length = 932
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ +++ + GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 636 LSKLKSTYTDALQ-DHINPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIRE 694
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A PG+ L+ DY Q+ELRILAH+A ++ AF+ G D H+ TA M+
Sbjct: 695 AFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMF 745
>gi|449128718|ref|ZP_21764964.1| DNA polymerase I [Treponema denticola SP33]
gi|448941126|gb|EMB22030.1| DNA polymerase I [Treponema denticola SP33]
Length = 943
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 663 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 723 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 757
>gi|352086477|ref|ZP_08953979.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
gi|351679442|gb|EHA62583.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
Length = 916
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNINT-ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + + TGR+S+ PNLQN P ++ +IRQAFIA PG ++ ADY
Sbjct: 637 VNPRTGRVHTSYHQGSVATGRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWWVMAADYS 696
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF+ GGD H TA ++
Sbjct: 697 QIELRIMAHLSGDEGLLKAFREGGDVHRATAAEVF 731
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 55/247 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D+L P FED + K+ + +D ++L +YG+ V G D+M + +W++ T +
Sbjct: 389 DVLRALKPIFEDATRPKLGQHAKYDINILSHYGIAVQGLKHDSMLESYVWNA---TATRH 445
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
+++L +K + D Y+ KG F S D+
Sbjct: 446 DMDSLA--KKYLGYDTVKYEDVAGKGARQISF----SQVDL------------------- 480
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
+ Y+A D+ TL+L+ +L KL + VP ++ Y+E
Sbjct: 481 ----------DTACRYAAEDADVTLRLHHALWPKL---------ESVP--ALRRVYEEIE 519
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P +L +ME G+L+D + L R Q+ + + N+ S
Sbjct: 520 IPLVPVLAEMERRGVLIDGDELR------RQSQQLGRRMLELQQQSYALAGREFNLDSPK 573
Query: 663 QLRQLLF 669
QL+ +LF
Sbjct: 574 QLQAVLF 580
>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium fabrum str. C58]
gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium fabrum str. C58]
Length = 998
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + + RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ AD
Sbjct: 712 SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 771
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 772 YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMF 808
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 163/416 (39%), Gaps = 131/416 (31%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
+W+ + +V A DTE +D Q E++ FS+ A NGK D+
Sbjct: 388 LWIAAAREAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIR 435
Query: 418 ---------DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVL 451
G G DL ++ APF ED ++ KV N +D ++
Sbjct: 436 AAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLM 495
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
+ +G+ + F DTM ++ + ++ + T G +L
Sbjct: 496 KRHGVVMRSFD-DTMLISYVLEAGKTTHGMDTLS-------------------------- 528
Query: 512 EGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKL 569
E ++G I+ KD+ G +GK S + + +Y+A D+ TL+L
Sbjct: 529 ERWLGHTPIAYKDVTG---------SGKSSITFDFVNIDKA-----TAYAAEDADVTLRL 574
Query: 570 YKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-- 627
+ +LK +L+ + + Y+ +P +L ME G+ VDR+ LS +
Sbjct: 575 WMALKPRLV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSG 622
Query: 628 ---EKVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSK 676
+K A E+E A RF N+GS QL +LFG G +K
Sbjct: 623 ELAQKAASFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTK 668
Query: 677 DDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
S + + E + AEG + P K +R +T L+S D LP+ ++ T
Sbjct: 669 TGQWSTSAQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 718
>gi|449115967|ref|ZP_21752427.1| DNA polymerase I [Treponema denticola H-22]
gi|448955453|gb|EMB36220.1| DNA polymerase I [Treponema denticola H-22]
Length = 944
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|449107484|ref|ZP_21744138.1| DNA polymerase I [Treponema denticola ASLM]
gi|451969176|ref|ZP_21922405.1| DNA polymerase I [Treponema denticola US-Trep]
gi|448961684|gb|EMB42379.1| DNA polymerase I [Treponema denticola ASLM]
gi|451702044|gb|EMD56478.1| DNA polymerase I [Treponema denticola US-Trep]
Length = 944
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|417858475|ref|ZP_12503532.1| DNA polymerase I [Agrobacterium tumefaciens F2]
gi|338824479|gb|EGP58446.1| DNA polymerase I [Agrobacterium tumefaciens F2]
Length = 998
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720 RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 780 LAHVADIPQLRNAFENGIDIHAMTASEMF 808
>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
exonuclease [Cupriavidus taiwanensis LMG 19424]
Length = 939
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S T TGRL++ PNLQN P + +IR+AFIA PG+ ++ ADY
Sbjct: 659 VNPRTGRVHTSYGQATAVTGRLASTEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYS 718
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R+AV + Q
Sbjct: 719 QIELRIMAHISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQ 764
>gi|421259539|ref|ZP_15712084.1| DNA polymerase I, partial [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
gi|401696294|gb|EJS89143.1| DNA polymerase I, partial [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
Length = 242
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 16 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 68
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 69 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 128
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 129 LSQDKGLINAFNEGKDIHRSTAAEIF 154
>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 865
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+G++H N I T+TGRLS+ PNLQN ++ IR+AF+A G+ L+ ADY Q+EL
Sbjct: 589 DGKIHTLFNQIQTQTGRLSSSEPNLQNISVRNEEGKGIRKAFVASEGHVLLSADYSQIEL 648
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+A+ + M+DAF D H++TAM ++
Sbjct: 649 RMLAHMADEEQMIDAFNHDIDIHTKTAMQIF 679
>gi|421498484|ref|ZP_15945589.1| polA [Aeromonas media WS]
gi|407182528|gb|EKE56480.1| polA [Aeromonas media WS]
Length = 918
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E D L E + L S + LPL + + GRVH
Sbjct: 593 KGAPSTAEEVLA---ELAETYDLPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 647 SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ + +L AF G D H TA ++ AV T
Sbjct: 707 SGDQGLLTAFAEGKDIHKATAAEVFGVALEAVTT 740
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 74/308 (24%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
+ A DTE +D + V + F+I G A FG+ L + + +L
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPTQLTE---QQVLG 392
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P EDP+ KV N +D +VL+N+G+ + G DTM + + +S+
Sbjct: 393 KLKPLLEDPARLKVGQNLKYDRNVLQNHGIDLQGIAFDTMLESYVLNST----------- 441
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
A + DM + + IS +DI G+ + + ++ AP
Sbjct: 442 -------------ASRHDMDSLASKYLGVETISFEDIAGKGAKQLTFNQIELEQAAP--- 485
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
Y+A D+ TL+L+++L +L ++ + + E P
Sbjct: 486 -----------YAAEDADITLRLHQTLWGELSKLP-----------ELAKVFTEIELPLL 523
Query: 607 EILVKMETEGMLVDREYL----SEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+L +ME G +D + L EIE ++A E++A H + N+ S
Sbjct: 524 PVLARMELLGTTIDPKLLHQQSQEIEVRLAELERQA-----------HELAGQEFNLSSP 572
Query: 662 TQLRQLLF 669
QL ++LF
Sbjct: 573 KQLGEILF 580
>gi|398830519|ref|ZP_10588705.1| DNA polymerase I [Phyllobacterium sp. YR531]
gi|398213956|gb|EJN00540.1| DNA polymerase I [Phyllobacterium sp. YR531]
Length = 1002
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P + KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 724 RVHTSYAMAATSTGRLSSSEPNLQNIPVRTSEGRKIRTAFIAAPGNKLISADYSQIELRV 783
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF D H+ TA M+
Sbjct: 784 LAHVAEIPQLTQAFADSIDIHAMTASEMF 812
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 61/243 (25%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P ED S+ K+ H+ ++ V+ +G+ + DTM ++ + D+ EG +S+++L
Sbjct: 478 PMLEDASVLKIAHSMKYEWLVMHRHGIDLRPVD-DTMLISYVLDAG---EGHHSMDSLC- 532
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
DR ++G ++ KD+ G +GK S E+
Sbjct: 533 DR----------------------WLGHKPLAYKDLIG---------SGKSSLTFDKVEI 561
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
+R Y+A D+ TL+L++ LK +L+ DG + Y+ +P
Sbjct: 562 ERATE-----YAAEDADVTLRLWRLLKPRLVA-----DG-------LASVYERLERPLIP 604
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
+L +ME G+ VDR+ LS + A K A + +N+GS Q+ +
Sbjct: 605 VLARMEERGISVDRQILSRLSGDLAQSAAAIEEEIYKLAGEK------INIGSPKQMGDI 658
Query: 668 LFG 670
LFG
Sbjct: 659 LFG 661
>gi|449102534|ref|ZP_21739282.1| DNA polymerase I [Treponema denticola AL-2]
gi|448966123|gb|EMB46781.1| DNA polymerase I [Treponema denticola AL-2]
Length = 943
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 663 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 723 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 757
>gi|449131373|ref|ZP_21767589.1| DNA polymerase I [Treponema denticola SP37]
gi|448940206|gb|EMB21117.1| DNA polymerase I [Treponema denticola SP37]
Length = 944
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|384431242|ref|YP_005640602.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
gi|333966710|gb|AEG33475.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
Length = 831
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL G V + GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 663
>gi|424909057|ref|ZP_18332434.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845088|gb|EJA97610.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 1001
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 723 RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 782
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 783 LAHVADIPQLRNAFENGIDIHAMTASEMF 811
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
+W+ + +V A DTE +D Q E++ FS+ +G +A G+ ++
Sbjct: 391 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 442
Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
L G G DL ++ PF ED ++ KV N +D +++ +G
Sbjct: 443 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 502
Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
+ + F DTM ++ + ++ + T G SL E ++
Sbjct: 503 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 535
Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
G I KD+ G +GK S ++ + +Y+A D+ TL+L+ +L
Sbjct: 536 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 581
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
K +L+ + + Y+ +P +L ME G+ VDR+ LS + +
Sbjct: 582 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 629
Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
K A E+E A RF N+GS QL +LFG
Sbjct: 630 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 660
>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
Length = 929
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ +GRVH S + T TGRLS+ PNLQN P + +IRQAFIA PG
Sbjct: 644 LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYR 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF + D H TA ++
Sbjct: 701 IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF 742
>gi|408788349|ref|ZP_11200070.1| DNA polymerase I [Rhizobium lupini HPC(L)]
gi|408485938|gb|EKJ94271.1| DNA polymerase I [Rhizobium lupini HPC(L)]
Length = 998
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720 RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 780 LAHVADIPQLRNAFENGIDIHAMTASEMF 808
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
+W+ + +V A DTE +D Q E++ FS+ +G +A G+ ++
Sbjct: 388 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 439
Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
L G G DL ++ PF ED ++ KV N +D +++ +G
Sbjct: 440 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 499
Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
+ + F DTM ++ + ++ + T G SL E ++
Sbjct: 500 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 532
Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
G I KD+ G +GK S ++ + +Y+A D+ TL+L+ +L
Sbjct: 533 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 578
Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
K +L+ + + Y+ +P +L ME G+ VDR+ LS + +
Sbjct: 579 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 626
Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
K A E+E A RF N+GS QL +LFG
Sbjct: 627 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 657
>gi|375109946|ref|ZP_09756184.1| DNA polymerase I [Alishewanella jeotgali KCTC 22429]
gi|374569980|gb|EHR41125.1| DNA polymerase I [Alishewanella jeotgali KCTC 22429]
Length = 926
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + TGRLS+ PNLQN P ++ +IRQAFIA PG ++ DY
Sbjct: 645 INPATGRVHTSYHQAVAATGRLSSTEPNLQNIPIRTEEGRRIRQAFIAPPGKLIMAIDYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K++LDAF G D H TA ++
Sbjct: 705 QIELRIMAHLSQDKALLDAFAKGLDVHRATAAEVF 739
>gi|449123703|ref|ZP_21760025.1| DNA polymerase I [Treponema denticola OTK]
gi|448943956|gb|EMB24838.1| DNA polymerase I [Treponema denticola OTK]
Length = 944
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|444921443|ref|ZP_21241279.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507481|gb|ELV07657.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
Length = 914
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ V+ + GR+H S N T TGRLS+ +PNLQN P ++ KIR+AFIA PG +I AD
Sbjct: 632 AEVNPQTGRIHTSFNQALTSTGRLSSSKPNLQNIPVRTEEGRKIREAFIAKPGYRMISAD 691
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH + +++++AFK D H TA ++
Sbjct: 692 YSQIELRLMAHFSGDETLINAFKNDLDIHRATASEVF 728
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 63/315 (20%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
A DTE +D Q V I +I +G EA + + + V +D+L+ AP
Sbjct: 340 AVDTETDGLDAMQAKLVG----ISLAI-TGGEAIYIPLQHDLLVAPEQLPMQDVLDRLAP 394
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
EDP++ V N +D H+ + YG+ ++G DTM + +WD++ + ++++ L
Sbjct: 395 LLEDPNVALVGQNIKYDWHIFKRYGITLNGIADDTMLASYVWDATEK----HNMDDLA-- 448
Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
+ +++ KG KK + +I P+E
Sbjct: 449 LNYLEHTTTPFEEIAGKG---------------------KKQKTFNEI----PIETATH- 482
Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
Y+A D+ TL+LY +L ++ + ++ YQ P +L
Sbjct: 483 -------YAAEDADITLRLYHALSPRVASID-----------TLQKLYQTIEMPLLTVLA 524
Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
KME EG+LV+ +L + + +A + + A + N+GS QL +LF
Sbjct: 525 KMEHEGILVNVPHLEALSRELSQRLDALEAQAYELAGET------FNLGSPKQLGTILFE 578
Query: 671 --GKPNSKDDSESLP 683
G P K ++ P
Sbjct: 579 KLGLPVVKKTAKGQP 593
>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
Length = 934
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 777 KIFATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-IN 831
K+ +T Q+ E +A + + E + L SN+ Q ++ + GRVH + N +
Sbjct: 612 KVVSTAQDVLEELAAHHEAPALVLEYRQLAKLRSNYTE--QLPQLADREGRVHTTFNQVG 669
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +IR AFI GN L+ ADY Q+ELR++AH + +
Sbjct: 670 TATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSADYSQIELRLMAHFSQDPLL 729
Query: 892 LDAFKAGGDFHSRTAMNMY 910
LDA++ G D H+ TA ++
Sbjct: 730 LDAYRTGKDIHTITAAEVF 748
>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
Length = 932
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 651 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAFK G D H+ TA
Sbjct: 711 QIELRIMAHLSGDKALLDAFKNGKDIHAATA 741
>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 933
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY
Sbjct: 652 INPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYS 711
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF AG D H TA ++
Sbjct: 712 QIELRIMAHLSGDKGLLTAFAAGKDIHRATAAEVF 746
>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 901
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
+GR+H + N I TGRLS+ +PNLQN P + +IRQ F+ PG +L+ ADY Q+E
Sbjct: 623 DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIE 682
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ +S++ AF++G DFH TA ++
Sbjct: 683 LRIMAHLSGDESLIAAFESGHDFHKTTAARVF 714
>gi|409435645|ref|ZP_11262853.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
gi|408752403|emb|CCM74000.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
Length = 956
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 676 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISSPGHKLISADYSQIELRV 735
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF G D H+ TA M+
Sbjct: 736 LAHVAEIPQLTQAFADGVDIHAMTASEMF 764
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED SI KV N +D +++ YG++ F DTM ++ + D+ G
Sbjct: 422 RDALPRLKALLEDESILKVAQNLKYDYLLMKRYGVETKNFD-DTMLISYVLDAG---TGA 477
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I+ KD+ G +GK +
Sbjct: 478 HGMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSN 505
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 506 VTFDLVDIDRATH-----YAAEDAEITLRLWLVLKPRL------------AAEKLTTVYE 548
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L ME G+ VDR+ LS + A + K A +G
Sbjct: 549 RLERPLLPVLAHMEARGITVDRQILSRLSGDLAQGAAALEDEIYKLAGGR------FTIG 602
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 603 SPKQLGDILFG 613
>gi|333981901|ref|YP_004511111.1| DNA polymerase I [Methylomonas methanica MC09]
gi|333805942|gb|AEF98611.1| DNA polymerase I [Methylomonas methanica MC09]
Length = 918
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q ++ + GRVH S + TGRLS+ PNLQN P ++ KIRQAFIA PG
Sbjct: 634 LPQQ---INRRTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEGRKIRQAFIAPPGYK 690
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D HS TA ++
Sbjct: 691 IVAADYSQIELRIMAHLSGDAGLLAAFSQGVDVHSATAAEVF 732
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 55/246 (22%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P EDP+ K+ N +D H+L N+G+K+ G DTM + + +S T ++
Sbjct: 391 VLDALRPLLEDPNKPKLGQNLKYDAHILANHGIKLRGIQHDTMLESYVLNS---TASKHN 447
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++ L + + D ++ KG GF P
Sbjct: 448 MDDLA--KHYLGVDTIHFEDVAGKGAKQIGFQE-------------------------VP 480
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E+ + Y+A D+ TL+L+++L S +L +P ++ Y+E
Sbjct: 481 IEQAGQ--------YAAEDADITLRLHQTL-------SAQLQQQP----RLWGLYREIEI 521
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P ++LV++E G+L+D L + + + A + A + + H N+GS Q
Sbjct: 522 PLIDVLVRIEENGVLIDSAMLDQ-QSLELANRMAGIEQ-----QAHDLAGSAFNLGSPKQ 575
Query: 664 LRQLLF 669
++++L+
Sbjct: 576 IQEILY 581
>gi|422342121|ref|ZP_16423061.1| DNA polymerase I [Treponema denticola F0402]
gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
Length = 944
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
Length = 996
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
GA +++ ++ E A E + S + + L S + L G ++ + GRVH S
Sbjct: 668 GAWSTSAQVL--EDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGY-INPETGRVHTSYA 724
Query: 830 IN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
+ T TGRLS+ PNLQN P ++ KIR+AFIA G+ LI ADY Q+ELR+LAH+A+
Sbjct: 725 LAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMADI 784
Query: 889 KSMLDAFKAGGDFHSRTAMNMY 910
+ AF G D H+ TA M+
Sbjct: 785 PQLKKAFDDGLDIHAMTASEMF 806
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 59/257 (22%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
+D L+ P ED S+ K+ N +D V+ YG+ ++ F DTM ++ D+ + GG
Sbjct: 464 KDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRYGIDITPFD-DTMLLSYTVDAGK---GG 519
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
++ L+ +R + D K I K+I G K S I
Sbjct: 520 NGMDELS-ERWL---DHK-----------------PIPFKEICGSGK----------SMI 548
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
+ + +Y+A D+ TL+L+ LK +L + M Y+
Sbjct: 549 T----FDKVAIDKATAYAAEDADVTLRLWLILKPRLAS------------ERMATVYETL 592
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P +L +ME G+ VDR+ LS R E A K + + + N+GS
Sbjct: 593 ERPMVPVLARMEKRGISVDRQMLS------RLSGEFAQGMAGKESEIYELAGENFNIGSP 646
Query: 662 TQLRQLLFG--GKPNSK 676
QL +LFG G P K
Sbjct: 647 KQLGDILFGKMGLPGGK 663
>gi|418299118|ref|ZP_12910953.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
gi|355535412|gb|EHH04700.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
Length = 999
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 721 RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 780
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + +AF+ G D H+ TA M+
Sbjct: 781 LAHVADIPQLRNAFENGIDIHAMTASEMF 809
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 133/348 (38%), Gaps = 115/348 (33%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL- 417
W+ + +V A DTE +D Q E++ FS+ A NGK D+
Sbjct: 390 WIAAARETGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDATGTDIRA 437
Query: 418 --------DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLE 452
G G DL ++ PF ED ++ KV N +D +++
Sbjct: 438 AYVPLTHKTGSGGDLFSDGIRMAEGQVPFAEALARLKDLLEDEAVLKVAQNLKYDYLLMK 497
Query: 453 NYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDE 512
+G+ + F DTM ++ + ++ + T G SL E
Sbjct: 498 RHGVVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------E 530
Query: 513 GFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570
++G I+ KD+ G +GK S ++ + +Y+A D+ TL+L+
Sbjct: 531 RWLGHTPIAYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLW 576
Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI--- 627
+LK +L + + Y+ +P +L ME G+ VDR+ LS +
Sbjct: 577 MALKPRL------------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGE 624
Query: 628 --EKVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
+K A E+E A RF N+GS QL +LFG
Sbjct: 625 LAQKAASFEEEIYELAGERF--------------NIGSPKQLGDILFG 658
>gi|449119979|ref|ZP_21756366.1| DNA polymerase I [Treponema denticola H1-T]
gi|449122376|ref|ZP_21758716.1| DNA polymerase I [Treponema denticola MYR-T]
gi|448948132|gb|EMB28970.1| DNA polymerase I [Treponema denticola MYR-T]
gi|448948599|gb|EMB29433.1| DNA polymerase I [Treponema denticola H1-T]
Length = 944
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 664 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 724 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 758
>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
bacterium]
Length = 894
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ GRVH S N TGRLS+ PNLQN P + +IR+AF+A N L+ ADY
Sbjct: 613 DIFNNTGRVHTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADY 672
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAHL+ ++++DAF+ G D H+RTA ++
Sbjct: 673 SQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIF 708
>gi|449109294|ref|ZP_21745930.1| DNA polymerase I [Treponema denticola ATCC 33520]
gi|448959102|gb|EMB39824.1| DNA polymerase I [Treponema denticola ATCC 33520]
Length = 943
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ KNGR+H S + T TGRLS+R PNLQN P + KIR+AF A G LI ADY
Sbjct: 663 MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL ILAHL+ +++++AF G D H++TA ++
Sbjct: 723 QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF 757
>gi|397168981|ref|ZP_10492417.1| DNA polymerase I [Alishewanella aestuarii B11]
gi|396089568|gb|EJI87142.1| DNA polymerase I [Alishewanella aestuarii B11]
Length = 926
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + TGRLS+ PNLQN P ++ +IRQAFIA PG ++ DY
Sbjct: 645 INPATGRVHTSYHQAVAATGRLSSTEPNLQNIPIRTEEGRRIRQAFIAPPGKLIMAIDYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K++LDAF G D H TA ++
Sbjct: 705 QIELRIMAHLSQDKALLDAFAKGLDVHRATAAEVF 739
>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
Length = 995
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY
Sbjct: 711 VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF+ G D H+ TA M+
Sbjct: 771 QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMF 805
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
V A DTE +D Q E++ FS+ A NGK D+ G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443
Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
G DL ++ PF ED ++ K+ N +D +++ +G+ + F
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
DTM ++ + ++ + T G +L E ++G I+
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536
Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
KD+ G +GK S ++ + +Y+A D+ TL+L+ LK +L
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
+ + Y+ +P +L ME G+ VDR+ LS + +K A E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630
Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
E A RF N+GS QL +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654
>gi|338706083|ref|YP_004672851.1| DNA-directed DNA polymerase I [Treponema paraluiscuniculi Cuniculi
A]
gi|335344144|gb|AEH40060.1| DNA-directed DNA polymerase I [Treponema paraluiscuniculi Cuniculi
A]
Length = 997
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL +LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
Length = 340
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + E + L+ +I LPL ++ + GRVH S N
Sbjct: 19 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 75
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M
Sbjct: 76 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 135
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+DAF + D H+ TA +Y
Sbjct: 136 IDAFLSNHDIHAATAAKIY 154
>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
Length = 908
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G L+ ADY
Sbjct: 627 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYS 686
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF+ G D H TA ++
Sbjct: 687 QIELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVF 721
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 65/251 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P EDP KKV N +D +VL N+ +++ G DTM + + +S
Sbjct: 380 VLEQLKPLLEDPKHKKVGQNLKYDKNVLANHDIQLEGIAEDTMVESYVLNS--------- 430
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
G R M + Y + + T E GK + + F + L+ SAG
Sbjct: 431 ----VGTRHDMDSLARTYLDEETI--TYESIAGKGAKQLTFNQIDLE---SAG------- 474
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L +L K GK + Y+E
Sbjct: 475 -------------PYAAEDADITLRLHQTLAPRL-----KDTGK------LESVYREIDL 510
Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G L+ R++ E+ E++A E+EA H + N+
Sbjct: 511 PLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEA-----------HEVAGEAFNL 559
Query: 659 GSDTQLRQLLF 669
GS QL+ +L+
Sbjct: 560 GSTKQLQAILY 570
>gi|386816130|ref|ZP_10103348.1| DNA polymerase I [Thiothrix nivea DSM 5205]
gi|386420706|gb|EIJ34541.1| DNA polymerase I [Thiothrix nivea DSM 5205]
Length = 927
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GRVH S + TGRLS+ PNLQN P ++ +IRQAFIA G L+ ADY
Sbjct: 646 QINPRTGRVHTSYHQAVASTGRLSSTDPNLQNIPVRNEEGRRIRQAFIAEKGCKLLAADY 705
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +LDAF G D H TA ++ + V T Q
Sbjct: 706 SQIELRIMAHLSGDKGLLDAFAHGLDVHRATAAEVFGTPLDEVSTEQ 752
>gi|387812902|ref|YP_005428379.1| DNA polymerase I [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337909|emb|CCG93956.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 965
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G L+ ADY
Sbjct: 684 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYS 743
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF+ G D H TA ++
Sbjct: 744 QIELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVF 778
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 65/251 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P EDP KKV N +D +VL N+ +++ G DTM + + +S
Sbjct: 437 VLEQLKPLLEDPKHKKVGQNLKYDKNVLANHDIQLEGIAEDTMVESYVLNS--------- 487
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
G R M + Y + + T E GK + + F + L++ G
Sbjct: 488 ----VGTRHDMDSLARTYLDEETI--TYESIAGKGAKQLTFNQIDLERAG---------- 531
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L +L K GK + Y+E
Sbjct: 532 -------------PYAAEDADITLRLHQTLAPRL-----KGTGK------LESVYREIDL 567
Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G L+ R++ E+ E++A E+EA H + N+
Sbjct: 568 PLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEA-----------HEVAGEAFNL 616
Query: 659 GSDTQLRQLLF 669
GS QL+ +L+
Sbjct: 617 GSTKQLQAILY 627
>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
gi|378974737|ref|YP_005223345.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pallidum
DAL-1]
gi|408502008|ref|YP_006869452.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6166143|sp|P74933.2|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
gi|374680135|gb|AEZ60425.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475371|gb|AFU66136.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 997
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL +LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
>gi|384421657|ref|YP_005631016.1| DNA polymerase I [Treponema pallidum subsp. pallidum str. Chicago]
gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 1015
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 733 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 792
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL +LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 793 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 829
>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Xenorhabdus bovienii SS-2004]
Length = 932
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+R PNLQN P + +IRQAFIA G ++ ADY Q+ELRI
Sbjct: 658 RVHTSYHQAVTATGRLSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRI 717
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AHL+ K +L+AF G D HS TA ++
Sbjct: 718 MAHLSQDKGLLEAFAQGKDIHSATAAEVF 746
>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
Length = 831
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE-T 834
+T++EA E A+ L ++ + +S ++LP++ G +GR+H N T
Sbjct: 513 STDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPMEEGR--GSDGRLHGQFNQTVAAT 570
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ RPNLQN PA + +R+ F+A G L+ ADY Q+ELR+LAH + + +A
Sbjct: 571 GRLSSSRPNLQNIPARTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREA 630
Query: 895 FKAGGDFHSRTAMNMY 910
F G D H+RTA ++
Sbjct: 631 FSRGEDIHARTAALLF 646
>gi|327387327|gb|AEA72258.1| putative DNA polymerase I [uncultured bacterium]
Length = 729
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 822 GRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
GR+H S + T TGRLS+ PNLQN P + +IRQAF A PG+ ++ ADY Q+ELR
Sbjct: 627 GRLHTSYHQAVTATGRLSSSDPNLQNIPVRTAEGRRIRQAFTASPGHKIVAADYSQIELR 686
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
I+AHL+N S+ AF G D HS TA ++
Sbjct: 687 IMAHLSNDASLQKAFAEGLDIHSATAAEVW 716
>gi|334139985|ref|YP_004533185.1| DNA polymerase I [Novosphingobium sp. PP1Y]
gi|333938009|emb|CCA91367.1| DNA polymerase I [Novosphingobium sp. PP1Y]
Length = 946
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E+ A E + + E + L S + LQ + ++ K GRVH S + + +TGRLS+
Sbjct: 631 EKLAGEGAQVATKVLEWRQLSKLRSTYTEALQAA-INPKTGRVHTSYSLVGAQTGRLSST 689
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR F+A GN L+ ADY Q+ELR+ A +A+ S+ +AF G D
Sbjct: 690 DPNLQNIPIRTEIGRQIRDCFVADSGNVLLAADYSQIELRLAAFMADVPSLKEAFANGED 749
Query: 901 FHSRTAMNMY 910
H+RTA M+
Sbjct: 750 IHARTAQEMF 759
>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
Length = 946
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 779 FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRL 837
A ++ A+ D + E + L S + LQ + ++ + GRVH S + + +TGRL
Sbjct: 631 LAKDEAAKPIADKV---LEWRHLSKLKSTYTDALQ-AQINPETGRVHTSYSLVGAQTGRL 686
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
S+ PNLQN P + IR+AF+ GN L+ ADY Q+ELR+ AH+A+ ++ +AF
Sbjct: 687 SSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADVDTLKEAFAN 746
Query: 898 GGDFHSRTAMNMYPHI 913
G D H+RTA M+ +
Sbjct: 747 GEDIHARTATEMFGEV 762
>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
Length = 951
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 20/135 (14%)
Query: 792 ISALCEVCSIDSLISNFI---------------LPLQGSNVSGKNGRVHCS-LNINTETG 835
IS L E+ +ID L + + LPL ++ NGR+H S + T TG
Sbjct: 635 ISVLEELAAIDELPAKILDYRASAKLKSGYADALPL----LADANGRIHTSFIQTGTATG 690
Query: 836 RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
RLS+R PNLQN P ++ KIR+AF A G LI ADY Q+EL ILAH + ++++ AF
Sbjct: 691 RLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAF 750
Query: 896 KAGGDFHSRTAMNMY 910
+ G D H+ TA ++
Sbjct: 751 RQGTDVHAATAALIF 765
>gi|378972608|ref|YP_005221212.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973674|ref|YP_005222280.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378981583|ref|YP_005229888.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374676931|gb|AEZ57224.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678000|gb|AEZ58292.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679069|gb|AEZ59360.1| DNA-directed DNA polymerase I [Treponema pallidum subsp. pertenue
str. Gauthier]
Length = 997
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL +LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
>gi|359398847|ref|ZP_09191862.1| DNA polymerase I [Novosphingobium pentaromativorans US6-1]
gi|357599790|gb|EHJ61494.1| DNA polymerase I [Novosphingobium pentaromativorans US6-1]
Length = 946
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E+ A E + + E + L S + LQ + ++ K GRVH S + + +TGRLS+
Sbjct: 631 EKLAGEGAQVATKVLEWRQLSKLRSTYTEALQAA-INPKTGRVHTSYSLVGAQTGRLSST 689
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR F+A GN L+ ADY Q+ELR+ A +A+ S+ +AF G D
Sbjct: 690 DPNLQNIPIRTEIGRQIRDCFVADSGNVLLAADYSQIELRLAAFMADVPSLKEAFANGED 749
Query: 901 FHSRTAMNMY 910
H+RTA M+
Sbjct: 750 IHARTAQEMF 759
>gi|349688266|ref|ZP_08899408.1| DNA polymerase I [Gluconacetobacter oboediens 174Bp2]
Length = 922
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A PG+ L+ AD
Sbjct: 640 NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHVLVSAD 699
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LA +A+ ++ +AF+ G D H+RTA ++
Sbjct: 700 YSQIELRLLADVADIPALREAFELGQDIHARTASEVF 736
>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
Length = 944
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ ++GRVH S + + +TGRLS+ PNLQN P + +IR AF+A GN L+ ADY
Sbjct: 663 INPRSGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYS 722
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
Q+ELR+ AH+A+ + +AF G D H+RTA M+ +
Sbjct: 723 QIELRLAAHMADVAPLKEAFAEGEDIHARTATEMFGEV 760
>gi|385330034|ref|YP_005883985.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
Length = 868
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G L+ ADY
Sbjct: 587 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYS 646
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF+ G D H TA ++
Sbjct: 647 QIELRIMAHLSGDKGLLKAFEKGEDIHKATASEVF 681
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 65/251 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P E+P + KV N +D +VL N+G+ + G DTM + + +S
Sbjct: 341 VLDQLKPLLENPDLAKVGQNLKYDKNVLANHGITLEGIAEDTMLESYVLNS--------- 391
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
R M D A K + E GK + + F + L+K AP
Sbjct: 392 ----VATRHDM--DSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEK---------AAP 436
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L+ KL E GK + Y++
Sbjct: 437 --------------YAAEDADITLRLHQTLRPKLKET-----GK------LAAVYEDIDL 471
Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G L+ R++ E+ E++A E+EA H + N+
Sbjct: 472 PLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEA-----------HEVAGETFNL 520
Query: 659 GSDTQLRQLLF 669
GS QL+ + +
Sbjct: 521 GSTKQLQAIFY 531
>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
Length = 1001
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
GA +++ ++ E A E S + E + L S + L G ++ + RVH S +
Sbjct: 673 GAWSTSAQVL--EDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPG-YINPETKRVHTSYS 729
Query: 830 IN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
+ T TGRLS+ PNLQN P + KIRQAFIA G LI ADY Q+ELR+LAH+A+
Sbjct: 730 LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789
Query: 889 KSMLDAFKAGGDFHSRTAMNMY 910
+ AF+ G D H+ TA M+
Sbjct: 790 PQLKKAFEDGLDIHAMTASEMF 811
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 63/258 (24%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
D L P ED I K+ N +D V+ +G+ V + DTM ++ D+ + GG
Sbjct: 470 DALKALKPMLEDRGILKIAQNLKYDWLVMTRHGVDVDPYD-DTMLLSYTVDAGK---GGN 525
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
++ L+ E ++G I K++ G K S
Sbjct: 526 GMDELS-----------------------ERWLGHKPIPFKEVCGSGK----------SM 552
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
I + + +Y+A D+ TL+L+ +LK +L M Y+
Sbjct: 553 IT----FDKVAIDKATAYAAEDADVTLRLWLTLKPRLAS------------DHMATVYET 596
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
+P +L +ME G+ VDR+ LS + A + + A + NVGS
Sbjct: 597 LERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALESEIYELA------GETFNVGS 650
Query: 661 DTQLRQLLFG--GKPNSK 676
QL +LFG G P K
Sbjct: 651 PKQLGDILFGKMGLPGGK 668
>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
Length = 898
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ K GRVH S + TGRLS+ PNLQN PA + KIRQAFIA PG ++ ADY
Sbjct: 617 QINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNIPARTHEGRKIRQAFIAPPGYFILAADY 676
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AH + K +L AF G D H TA
Sbjct: 677 SQIELRIIAHFSQDKGLLKAFAQGLDIHQATA 708
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 73/266 (27%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P FEDP K+ H+ +D ++L +YG+++ G DTM + L DS+
Sbjct: 371 VLQQLKPLFEDPKQIKIGHHLKYDMNILAHYGIQLRGIDFDTMLESYLLDSASNQH---- 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
S D A + K E GK + + F + L+ G
Sbjct: 427 -----------SLDSAALKHLDHKTIRFEEIAGKGAKQKTFNQINLQDAG---------- 465
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ L+L+++LK +L V G S Y E
Sbjct: 466 -------------PYAAEDAAIALRLHETLKPQL---------DNVVGLST--VYTEIEM 501
Query: 604 PFGEILVKMETEGMLVDREYL-----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G+L+D L S +++ EQ+A F+ K N+
Sbjct: 502 PLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQA----FQLA-------GKPFNL 550
Query: 659 GSDTQLRQLLFGGKPNSKDDSESLPI 684
GS QL+ +LF D LPI
Sbjct: 551 GSPKQLQTILF--------DDHGLPI 568
>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
gi|423211776|ref|ZP_17198309.1| DNA polymerase I [Aeromonas veronii AER397]
gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
gi|404612997|gb|EKB10041.1| DNA polymerase I [Aeromonas veronii AER397]
Length = 921
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 596 KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 649
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 650 SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
+ K +L AF G D H TA ++ +AV T
Sbjct: 710 SGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTT 743
>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
Length = 928
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 768 YKGAVASNNKIFAT-----EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG 822
YKG + ++T EQ + + + + + L S + LQ + ++ +G
Sbjct: 594 YKGGRKGKSGAYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQ-AQINKDSG 652
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S +++ +TGRLS+ PNLQN P + +IR AF+A PGN ++ ADY Q+ELR+
Sbjct: 653 RVHTSYSLSGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRL 712
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AH+A+ ++ +AF G D H+ TA ++
Sbjct: 713 AAHMADVPALKEAFANGEDIHAATAQQLF 741
>gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 896
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIRQAFIA ++ ADY Q+EL
Sbjct: 619 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIEL 678
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF G D HS TA
Sbjct: 679 RIMAHLSKDKNLLKAFNQGLDIHSATA 705
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P F D KV HN+ FD +L YG+K+ DTM MA + SS G +
Sbjct: 370 VLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQVNDTMIMAYVLKSS----GKHD 425
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + + + AY T G GR +L D
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLTLDQ--------ID 458
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E++ + Y+A D+ T +LY K L + + ++ Y
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSNVEM 499
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL ME G+ +D L EQ A + K C D + N+ S
Sbjct: 500 PLTIILNNMEKVGVKIDAAKL--------IEQSANLEDSIKELEIKCYDLAGQEFNLSSP 551
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 552 VQLREILF 559
>gi|418407646|ref|ZP_12980963.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
gi|358005632|gb|EHJ97957.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
Length = 995
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY
Sbjct: 711 VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF+ G D H+ TA M+
Sbjct: 771 QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMF 805
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
V A DTE +D Q E++ FS+ A NGK D+ G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443
Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
G DL ++ PF ED ++ K+ N +D +++ +G+ + F
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503
Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
DTM ++ + ++ + T G +L E ++G I+
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536
Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
KD+ G +GK S ++ + +Y+A D+ TL+L+ LK +L
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579
Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
+ + Y+ +P +L ME G+ VDR+ LS + +K A E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630
Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
E A RF N+GS QL +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654
>gi|422021521|ref|ZP_16368033.1| DNA polymerase I [Providencia sneebia DSM 19967]
gi|414099379|gb|EKT61022.1| DNA polymerase I [Providencia sneebia DSM 19967]
Length = 928
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ K RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY
Sbjct: 648 IDPKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYS 707
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L+AF G D H TA ++
Sbjct: 708 QIELRIMAHLSQDKGLLNAFAEGKDIHRATASEVF 742
>gi|337754632|ref|YP_004647143.1| DNA polymerase I [Francisella sp. TX077308]
gi|336446237|gb|AEI35543.1| DNA polymerase I [Francisella sp. TX077308]
Length = 896
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIRQAFIA ++ ADY Q+EL
Sbjct: 619 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAENDFCVVAADYSQIEL 678
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF G D HS TA
Sbjct: 679 RIMAHLSKDKNLLKAFNQGLDIHSATA 705
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P F D KV HN+ FD VL YG+K+ DTM MA + SS G +
Sbjct: 370 VLDSLKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNLVNDTMIMAYVLKSS----GKHD 425
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + + + AY T G GR +L D
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLILDQ--------ID 458
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E++ + Y+A D+ T +LY K L + + ++ Y +
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSKVEM 499
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL ME G+ +D + L EQ A + K C D + N+ S
Sbjct: 500 PLTIILNNMEKTGVKIDADKL--------IEQSANLEDSIKELEVKCYDLAGQEFNLASP 551
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 552 VQLREILF 559
>gi|383456916|ref|YP_005370905.1| DNA polymerase I [Corallococcus coralloides DSM 2259]
gi|380733938|gb|AFE09940.1| DNA polymerase I [Corallococcus coralloides DSM 2259]
Length = 901
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 794 ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
AL E + L S ++ L + K+GR+H + + T TGRLS+ PNLQN P +
Sbjct: 600 ALIEYRGLSKLKSTYLDTL--PTLVAKDGRIHTTYHQAATATGRLSSSDPNLQNIPVRTE 657
Query: 853 DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IR+AF+A G+ L+ ADY Q+ELR+LAH+A ++DAF+ D HSRTA ++
Sbjct: 658 LGREIRRAFVADAGHQLVSADYSQIELRLLAHIAEDPVLIDAFRNDEDIHSRTAAEVF 715
>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
Length = 911
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H L T TGRLS++ PNLQN P ++D +IR AF+ GN I ADY
Sbjct: 631 VNPETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYS 690
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+EL +LAHL+ + AF++GGD H RTA ++
Sbjct: 691 QIELVVLAHLSEDPELSQAFRSGGDVHRRTASLIF 725
>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
Length = 937
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 764 EETEYKGAVASNNKIFAT-----EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
E +G V N + T E A E D + + + + L S + LQ ++
Sbjct: 599 ERMSLQGGVKGKNGAWGTGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ-EHIH 657
Query: 819 GKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
+ GRVH S +I TGRL++ PNLQN P ++ +IR+AF+A G L+ DY Q+
Sbjct: 658 PETGRVHTSYSIAGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQI 717
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ELRILAH+A+ ++ AF+ G D H+ TA M+
Sbjct: 718 ELRILAHIADIPALKQAFREGHDIHAMTAAEMF 750
>gi|418937089|ref|ZP_13490762.1| DNA polymerase I [Rhizobium sp. PDO1-076]
gi|375056256|gb|EHS52458.1| DNA polymerase I [Rhizobium sp. PDO1-076]
Length = 995
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY
Sbjct: 709 VHPQTKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 768
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 769 QIELRVLAHVADIPQLRQAFADGIDIHAMTASEMF 803
>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
gi|1169402|sp|P43741.1|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
Length = 930
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ IRQAFIA G S++ ADY
Sbjct: 651 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 711 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ ++AAK
Sbjct: 297 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNAAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF----------------- 489
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 490 --------NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>gi|420241838|ref|ZP_14745936.1| DNA polymerase I [Rhizobium sp. CF080]
gi|398069376|gb|EJL60735.1| DNA polymerase I [Rhizobium sp. CF080]
Length = 996
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 716 RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSADYSQIELRV 775
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 776 LAHVADIPQLRQAFSDGIDIHAMTASEMF 804
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 57/249 (22%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
R+ L P EDPS+ KV N +D V++ +G+ V G+ DTM M+ + ++ + G
Sbjct: 462 REALARLKPLLEDPSVLKVAQNLKYDYLVMKRHGITVEGYD-DTMLMSYVLEAGKSNHGM 520
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
+L + K I+ K++ G G AG
Sbjct: 521 DALSERWLNHK------------------------PITFKEVAG------SGKAGVTFDF 550
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
+++ +Y+A D+ TL+L+ LK +L + Y+
Sbjct: 551 VDIDKAT--------AYAAEDADVTLRLWMVLKPQL------------AAAGLTRIYERL 590
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P +L +ME G+ +DR+ LS + A + + A + +GS
Sbjct: 591 ERPLVSVLARMEERGITIDRQILSRLSGELAQRAAAFEDEIYELAGEK------FTIGSP 644
Query: 662 TQLRQLLFG 670
QL +LFG
Sbjct: 645 KQLGDILFG 653
>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
Length = 931
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 650 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDKALLDAFQQGKDIHAATA 740
>gi|343506692|ref|ZP_08744163.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
gi|342801915|gb|EGU37367.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
Length = 933
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 652 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKILAVDYS 711
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 712 QIELRIMAHLSGDKALLEAFREGKDIHAATA 742
>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 223 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 281
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 282 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 341
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 342 RDIHTETASWMFGVPREAVD 361
>gi|335042141|ref|ZP_08535168.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
containing protein [Methylophaga aminisulfidivorans MP]
gi|333788755|gb|EGL54637.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
containing protein [Methylophaga aminisulfidivorans MP]
Length = 872
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPLQ V+ +GRVH S + T TGRLS+ PNLQN P ++ +IR+AF+A
Sbjct: 588 LPLQ---VNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRIREAFVASDSYV 644
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ ADY Q+ELRI+AHL+ KS+L+AF G D H TA ++
Sbjct: 645 LLAADYSQIELRIMAHLSGDKSLLNAFANGEDIHRHTASEIF 686
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 79/284 (27%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
+++++ P E P KV N +D HVL N+G+ + G DTM + + DS+
Sbjct: 343 EIMHDLKPLLESPKHLKVGQNLKYDRHVLLNHGIDLQGIAHDTMLESYVLDST------- 395
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
A + DM + + ++G+ I +DI G+ K + + I
Sbjct: 396 -----------------ATRHDMD--SLAQKYLGRDTIHFEDIAGKGKKQLTFNEIGIEQ 436
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+P Y+A D+ TL+L+++L K+ + +P S+ Y+E
Sbjct: 437 ASP--------------YAAEDADITLQLHQTLWPKI---------EKIP--SLAKVYKE 471
Query: 601 YWQPFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKY 655
P +L +E G+ +D L + ++A E++A +K+
Sbjct: 472 LEMPLLPVLNTLERNGVNIDIWMLQQQSDNMARQIADLEEQAYTVAGQKF---------- 521
Query: 656 MNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
N+GS QL+++L+ + + LP+++ K P + AE
Sbjct: 522 -NLGSPKQLQEILY--------EKQQLPVKK--KTPKGQPSTAE 554
>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
Length = 950
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY
Sbjct: 671 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYS 730
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N +++AF G D H TA ++
Sbjct: 731 QIELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIF 765
>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
Length = 543
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 228 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 286
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 287 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 346
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 347 RDIHTETASWMFGVPREAVD 366
>gi|399909580|ref|ZP_10778132.1| DNA polymerase I [Halomonas sp. KM-1]
Length = 927
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S + TGRLS+ PNLQN P ++ KIRQAFIA PG ++ ADY
Sbjct: 647 VNKRTGRLHTSYHQAVAATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF G D H+ TA ++
Sbjct: 707 QIELRIMAHLSEDQGLLTAFAEGRDIHTATAAEVF 741
>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
Length = 934
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+ PNLQN P + +IRQAFIA G
Sbjct: 649 LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYR 705
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF AG D H TA ++
Sbjct: 706 IVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVF 747
>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 225 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 284 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 344 RDIHTETASWMFGVPREAVD 363
>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 224 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 282
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 283 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 342
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 343 RDIHTETASWMFGVPREAVD 362
>gi|416892198|ref|ZP_11923628.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
gi|347814962|gb|EGY31606.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
Length = 502
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY
Sbjct: 223 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYS 282
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N +++AF G D H TA ++
Sbjct: 283 QIELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIF 317
>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
Length = 931
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 650 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDKALLDAFQQGKDIHAATA 740
>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
Length = 554
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 239 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 297
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 298 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 357
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 358 RDIHTETASWMFGVPREAVD 377
>gi|350529887|ref|ZP_08908828.1| DNA polymerase I [Vibrio rotiferianus DAT722]
Length = 930
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL++ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSDDQALLDAFRHGKDIHAATA 739
>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
gi|387152325|ref|YP_005701261.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
Length = 1015
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
++ L S ++ PL + GR+H + N + T TGRLS+ PNLQN PA ++R
Sbjct: 717 LEKLRSTYLEPL--PKLVDAAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRS 774
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
F A GN L+ ADY Q+ELR+LAH++ ++L AF+ G D H RTA +Y
Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825
>gi|381403373|ref|ZP_09928057.1| DNA polymerase I [Pantoea sp. Sc1]
gi|380736572|gb|EIB97635.1| DNA polymerase I [Pantoea sp. Sc1]
Length = 928
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+EL
Sbjct: 651 TGRVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFIADKGYRIVAADYSQIEL 710
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +LDAF G D H TA ++
Sbjct: 711 RIMAHLSQDKGLLDAFAQGEDIHRATASEVF 741
>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
Length = 928
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 773 ASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN- 831
A + + EQ + + + E + L S + LQ + ++ +GRVH S ++
Sbjct: 604 AYSTDVTILEQLKAQGAPIAAKVLEWRQLSKLKSTYTDALQ-AQINKDSGRVHTSYSLTG 662
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
+TGRLS+ PNLQN P + +IR AF+A PG+ ++ ADY Q+ELR+ AH+A+ ++
Sbjct: 663 AQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPAL 722
Query: 892 LDAFKAGGDFHSRTAMNMY 910
+AF AG D H+ TA ++
Sbjct: 723 KEAFAAGEDIHAATAEQLF 741
>gi|444376048|ref|ZP_21175297.1| DNA polymerase I [Enterovibrio sp. AK16]
gi|443679819|gb|ELT86470.1| DNA polymerase I [Enterovibrio sp. AK16]
Length = 931
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ DY
Sbjct: 650 VKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ ++++DAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDEALIDAFRHGKDIHAATA 740
>gi|5822373|pdb|1QTM|A Chain A, Ddttp-trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 225 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 284 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 344 RDIHTETASWMFGVPREAVD 363
>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
Wi Abasic Site
gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
Pol In Complex With A Blunt-Ended Dna And Ddatp
gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Trapped 4'- Ethylated Dttp
gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Trapped 4'- Methylated Dttp
gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
Thermus Aquaticus Processing C5 Modified Thymidines
gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
Thermus Aquaticus Processing C5 Modified Thymidies
gi|375332397|pdb|3RR7|A Chain A, Binary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site
gi|375332400|pdb|3RR8|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddgtp
gi|375332403|pdb|3RRG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddgtp
gi|375332406|pdb|3RRH|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddttp
gi|375332444|pdb|3T3F|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And Dnitp
gi|387766300|pdb|4DF4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With 7-(N-(10- Hydroxydecanoyl)-Aminopentinyl)-7-Deaza-2
-Datp
gi|387766303|pdb|4DF8|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Aminopentinyl-7- Deaza-2-Datp
gi|387766306|pdb|4DFJ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With 5-(Aminopentinyl)- Dttp
gi|387766309|pdb|4DFK|A Chain A, Large Fragment Of Dna Polymerase I From Thermus Aquaticus
In A Closed Ternary Complex With
5-(N-(10-Hydroxydecanoyl)-Aminopentinyl)-2-Dutp
gi|387766312|pdb|4DFM|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In Ternary Complex With
5-(Aminopentinyl)-2-Dctp
gi|387766315|pdb|4DFP|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aqauticus In A Ternary Complex With
7-(Aminopentinyl)-7- Deaza-Dgtp
gi|388603902|pdb|3RTV|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Natural PrimerTEMPLATE DNA
gi|390136217|pdb|3SV3|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With The Artificial Base Pair Dnam-D5sicstp
gi|390136220|pdb|3SV4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dt As Templating Nucleobase
gi|390136223|pdb|3SYZ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dnam As Templating Nucleobase
gi|390136226|pdb|3SZ2|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dg As Templating Nucleobase
gi|428698144|pdb|4DLG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase
Length = 540
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 225 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 284 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 344 RDIHTETASWMFGVPREAVD 363
>gi|390167982|ref|ZP_10219957.1| DNA polymerase I, partial [Sphingobium indicum B90A]
gi|389589427|gb|EIM67447.1| DNA polymerase I, partial [Sphingobium indicum B90A]
Length = 629
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 768 YKGAVASNNKIFAT-----EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG 822
YKG + ++T EQ + + + + + L S + LQ + ++ +G
Sbjct: 295 YKGGRKGKSGAYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQ-AQINKDSG 353
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S +++ +TGRLS+ PNLQN P + +IR AF+A PGN ++ ADY Q+ELR+
Sbjct: 354 RVHTSYSLSGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRL 413
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
AH+A+ ++ +AF G D H+ TA ++ +
Sbjct: 414 AAHMADVPALKEAFANGEDIHAATAQQLFGEV 445
>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
Length = 912
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 821 NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH + TGRL++ PNLQN P + +IR+AFIA PGN ++ ADY Q+EL
Sbjct: 636 TGRVHTNYAQAVAVTGRLASNDPNLQNIPIRNAEGRRIREAFIAAPGNVIVSADYSQIEL 695
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
RI+AH++ ++ML AF G D H TA ++ R AV++ Q
Sbjct: 696 RIMAHISGDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQ 737
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P+ ED S KV N +D+H+ N+G+ + G DT+ + +++S R + S
Sbjct: 386 VLEKMKPWLEDASKAKVGQNLKYDSHIFANHGVNLRGIVHDTLLESYVFESHRSHDMD-S 444
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
L +RK ++ +Q+ KG + GF
Sbjct: 445 LALRHLNRKTIT-----FQEVCGKGASQIGF 470
>gi|418020806|ref|ZP_12660008.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
gi|347603842|gb|EGY28605.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
Length = 937
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S ++ +GRVH S + T TGRLS+R PNLQN P ++ +IRQAFIA P +I AD
Sbjct: 638 SMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPDYQIITAD 697
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELRI+AHL+ ++ AF A D H TA ++
Sbjct: 698 YSQIELRIMAHLSQDNGLIKAFTADKDIHRATAAEVF 734
>gi|333382951|ref|ZP_08474616.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
BAA-286]
Length = 931
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 781 TEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN-TETGRL 837
T + ++A + + E + L+S +I LPL VS + ++H S N T TGRL
Sbjct: 616 TLESMKDAHSIVGKILEYRGLKKLLSTYIDALPLL---VSPLDDKLHTSYNQTVTATGRL 672
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
S+ PNLQN P + +IR+AFIA ADY Q+ELRI+AHL+ +M+DAF +
Sbjct: 673 SSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDAFNS 732
Query: 898 GGDFHSRTAMNMY 910
G D H+ TA +Y
Sbjct: 733 GEDIHAATAAKIY 745
>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
Length = 968
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP GRVH + ++ T TGRLS+ PNLQN P + KIR AF+A
Sbjct: 680 LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G+ L+ ADY Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 732 SKGHLLLSADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMF 778
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 134/334 (40%), Gaps = 85/334 (25%)
Query: 415 DLLDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
D L GGGR + L P E+ ++ K+ N +D V++ + + + F DTM
Sbjct: 421 DNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQHNIVMCSFD-DTM 479
Query: 467 HMARLWDSSRRTEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
++ Y+LEA T V+SE ++ IS KD+
Sbjct: 480 LLS------------YALEAGISTHGMDVLSERWLGHKP--------------ISYKDLT 513
Query: 525 GRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL 584
R+ KI + A V+ Q Y+A D+ TL+L++ LK +L+
Sbjct: 514 HSRR--------KIVSFARVDLKQAT------LYAAEDADITLRLWQVLKPQLV------ 553
Query: 585 DGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRK 644
+ M Y+ +P EIL +ME G+LVDR+ LS R E A
Sbjct: 554 ------AQKMTKIYERLDRPLIEILARMEERGILVDRQILS------RLSGELAQTVLNL 601
Query: 645 WASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAE 699
+ + N+ S QL +LFG G +K S + + E + AE
Sbjct: 602 GEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTL------EELAAE 655
Query: 700 GKKTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
G P K +R +T L+S D LP+ + TG
Sbjct: 656 GHILPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689
>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
Length = 902
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 814 GSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
G ++ + GR+H S N TGRLS+ PNLQN P ++ KIR AFI PG L+ A
Sbjct: 618 GKLINPRTGRIHTSYNQTVAATGRLSSSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSA 677
Query: 873 DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELRILAH + + +L+AF+ D H RTA M+
Sbjct: 678 DYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMF 715
>gi|422006555|ref|ZP_16353544.1| DNA polymerase I [Providencia rettgeri Dmel1]
gi|414098771|gb|EKT60416.1| DNA polymerase I [Providencia rettgeri Dmel1]
Length = 930
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ + RVH S + T TGRLS+R PNLQN P
Sbjct: 629 LLEHRSLAKLKSTYTDKLPLM---INPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 686 EEGRRIRQAFIARDGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 66/305 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DL 424
+ A DTE +D ++ V + F+I G A G D LD + ++
Sbjct: 351 LFAFDTETDSLDTQEARLVG----MSFAIEPGHAAYLPLGH-----DYLDAPVQLPLEEV 401
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L P E I K+ N +D VLENYG+++ G DTM + + +S G + +
Sbjct: 402 LEVMKPLLESEKILKIGQNLKYDAEVLENYGIELKGIGYDTMLESYVLNSVAGM-GRHDM 460
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
++L DR + + +S ++I G K KK + +I+
Sbjct: 461 DSL-ADRHLNHK--------------------TVSFEEIAG--KGKKQLTFNQIAL---- 493
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
E +Y+A D+ TL L+++L +L+ +P ++ +Q P
Sbjct: 494 --------EEAANYAAEDADVTLLLHQALYP-------QLEAEP----TLNHIFQNIEMP 534
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
+LV+ME +G+L+D L+ KV A + K A + + N+ S QL
Sbjct: 535 LVPVLVRMERKGVLIDANVLAAQSKVITAR----LAELEKEAFELA--GEEFNLASPKQL 588
Query: 665 RQLLF 669
+ +LF
Sbjct: 589 QTILF 593
>gi|416045430|ref|ZP_11575392.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347995330|gb|EGY36518.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 962
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 639 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 692
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 693 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 752
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 753 SNDQGLINAFAQGKDIHRSTAAEIF 777
>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
Length = 897
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF D HS TA
Sbjct: 680 RIMAHLSKDKNLLKAFNQNLDIHSATA 706
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTVIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|387121098|ref|YP_006286981.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875590|gb|AFI87149.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 933
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 610 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 664 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|397655103|ref|YP_006495805.1| DNA polymerase I [Klebsiella oxytoca E718]
gi|394343856|gb|AFN29977.1| DNA polymerase I [Klebsiella oxytoca E718]
Length = 891
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 607 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 662
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 663 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 705
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED + KV N +D +L NYG+++ G DTM + +
Sbjct: 352 YLDAPDQIPRDRVLELLKPLLEDDKVLKVGQNLKYDRGILANYGIELRGIAFDTMLESYI 411
Query: 472 WDS 474
DS
Sbjct: 412 LDS 414
>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
Length = 916
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K GR+H S + T TGRLS+ PNLQN P + +IRQAFIA G L+ ADY Q+E
Sbjct: 639 KTGRIHTSYHQAITATGRLSSTDPNLQNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVE 698
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
LRI+AHL+ +LDAF D H TA ++ + V T Q
Sbjct: 699 LRIMAHLSQDSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQ 741
>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [Rhodobacterales bacterium HTCC2255]
gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
Length = 932
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 804 LISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
L S + LQG +++ GRVH S I+ TGRLS+ PNLQN P + KIR+AFI
Sbjct: 639 LKSTYTDALQG-HINPNTGRVHTSYVISGASTGRLSSTDPNLQNIPIRSEAGRKIREAFI 697
Query: 863 AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
A GN L+ DY Q+ELRILAH+A ++ AF G D H+ TA M+
Sbjct: 698 AEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFHEGQDIHALTASQMF 745
>gi|429732469|ref|ZP_19267079.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429155977|gb|EKX98619.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 933
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 610 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 664 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
Length = 931
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ DY
Sbjct: 650 VKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ ++++DAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDEALIDAFRHGKDIHAATA 740
>gi|359451863|ref|ZP_09241241.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
gi|358042321|dbj|GAA77490.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
Length = 911
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|385793571|ref|YP_005826547.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
Length = 897
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF D HS TA
Sbjct: 680 RIMAHLSKDKNLLKAFNQNLDIHSATA 706
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Alteromonadales bacterium TW-7]
gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Alteromonadales bacterium TW-7]
Length = 911
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|392539918|ref|ZP_10287055.1| DNA polymerase I [Pseudoalteromonas marina mano4]
Length = 911
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|386833763|ref|YP_006239077.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
gi|385200463|gb|AFI45318.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
Length = 930
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|415756317|ref|ZP_11481025.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348655828|gb|EGY71260.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-3]
Length = 895
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 572 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 625
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 626 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 685
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 686 SNDQGLINAFAQGKDIHRSTAAEIF 710
>gi|416031112|ref|ZP_11572398.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|348002278|gb|EGY42982.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 962
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 639 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 692
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 693 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 752
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 753 SNDQGLINAFAQGKDIHRSTAAEIF 777
>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 930
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|399076674|ref|ZP_10752127.1| DNA polymerase I [Caulobacter sp. AP07]
gi|398037018|gb|EJL30222.1| DNA polymerase I [Caulobacter sp. AP07]
Length = 978
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 812 LQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
L + G R+H S + T TGRLS+ PNLQN P ++ KIR+AFIA PG LI
Sbjct: 689 LIAAIAPGGGNRIHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFIAAPGKVLI 748
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ADY Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 749 SADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF 788
>gi|416108060|ref|ZP_11590898.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348004684|gb|EGY45182.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 502
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 223 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 282
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 283 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 317
>gi|416068114|ref|ZP_11582638.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348001358|gb|EGY42106.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 933
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 610 KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 664 SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+N + +++AF G D H TA ++
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|383309782|ref|YP_005362592.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
gi|380871054|gb|AFF23421.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
Length = 930
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|378773780|ref|YP_005176023.1| DNA polymerase I [Pasteurella multocida 36950]
gi|356596328|gb|AET15054.1| DNA polymerase I [Pasteurella multocida 36950]
Length = 930
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
Length = 930
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ + RVH S + T TGRLS+R PNLQN P
Sbjct: 629 LLEHRSLAKLKSTYTDKLPLM---INPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAFIA G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 686 EEGRRIRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF 744
>gi|402844159|ref|ZP_10892532.1| DNA-directed DNA polymerase [Klebsiella sp. OBRC7]
gi|402275566|gb|EJU24714.1| DNA-directed DNA polymerase [Klebsiella sp. OBRC7]
Length = 891
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 607 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 662
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 663 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 705
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED + KV N +D +L NYG+++ G DTM + +
Sbjct: 352 YLDAPDQIPRDRVLELLKPLLEDDKVLKVGQNLKYDRGILANYGIELRGIAFDTMLESYI 411
Query: 472 WDS 474
DS
Sbjct: 412 LDS 414
>gi|1097211|prf||2113329A DNA polymerase
Length = 834
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|416083775|ref|ZP_11586897.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348010512|gb|EGY50550.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 502
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 223 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 282
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 283 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 317
>gi|425065931|ref|ZP_18469051.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
gi|404383426|gb|EJZ79880.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
Length = 930
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|375258171|ref|YP_005017341.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
gi|365907649|gb|AEX03102.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
Length = 929
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 645 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 700
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 743
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED + KV N +D +L NYG+++ G DTM + +
Sbjct: 390 YLDAPDQIPRDRVLELLKPLLEDDKVLKVGQNLKYDRGILANYGIELRGIAFDTMLESYI 449
Query: 472 WDS 474
DS
Sbjct: 450 LDS 452
>gi|358450341|ref|ZP_09160805.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
gi|357225459|gb|EHJ03960.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
Length = 910
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 629 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFLAPEGYKLVAADYS 688
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF+ G D H TA ++
Sbjct: 689 QIELRIMAHLSGDKGLLKAFEKGEDIHKATASEVF 723
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 65/251 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P E+P + KV N +D +VL N+G+ + G DTM + + +S
Sbjct: 382 VLDQLKPLLENPDVAKVGQNLKYDKNVLANHGITLEGIAEDTMLESYVLNS--------- 432
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
R M D A K + E GK + + F + L+K AP
Sbjct: 433 ----VATRHDM--DSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEK---------AAP 477
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L+ KL E GK + Y++
Sbjct: 478 --------------YAAEDADITLRLHQTLRPKLKET-----GK------LAAVYEDIDL 512
Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G L+ R++ E+ E++A E+EA H + N+
Sbjct: 513 PLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEA-----------HEVAGETFNL 561
Query: 659 GSDTQLRQLLF 669
GS QL+ + +
Sbjct: 562 GSTKQLQAIFY 572
>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
Length = 968
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP GRVH + ++ T TGRLS+ PNLQN P + KIR+AF+A
Sbjct: 680 LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
G L+ ADY Q+ELRILAH+A+ ++ +AF G D H+ TA M+
Sbjct: 732 SKGYLLLSADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMF 778
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 134/331 (40%), Gaps = 83/331 (25%)
Query: 417 LDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
L GGGR + L P E+ ++ K+ N +D V++ Y + + F DTM +
Sbjct: 423 LLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQYNIVMCSFD-DTMLL 481
Query: 469 ARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528
S E G S T V+S+ ++ IS KD+
Sbjct: 482 ------SYALEAGIS----THGMDVLSKRWLGHKP--------------ISYKDL----- 512
Query: 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKP 588
S KI + A V+ Q Y+A D+ TL+L++ LK +L+
Sbjct: 513 ---THSGRKIVSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV---------- 553
Query: 589 VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWAS 647
+ M Y+ +P EIL +ME G+LVDR+ LS + ++A+A ++
Sbjct: 554 --AQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGE 611
Query: 648 KHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKK 702
K N+ S QL +LFG G +K S + + E + AEG
Sbjct: 612 K-------FNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTL------EELAAEGHI 658
Query: 703 TPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
P K +R +T L+S D LP+ + TG
Sbjct: 659 LPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689
>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
Length = 972
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH N + TGRLS+ PNLQN P ++ ++R+ FIA PG+ LI ADY
Sbjct: 686 VNPETGRVHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADYS 745
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELR+LAH+ +++ F G D H+ TA ++ NAV+ Q
Sbjct: 746 QIELRVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQ 791
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 60/246 (24%)
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTE--GGYSLEALT 488
FF DP+ KV HN FD VLE G+ V+G DTM A L D R + Y LE
Sbjct: 442 FFADPARPKVAHNAKFDIEVLERAGMPVAGLSFDTMLAAGLLDKRRNLKDLAFYELE--- 498
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
++E A + KG +++ ++ P+
Sbjct: 499 -----LAEPLDAIGDLIGKGKN------QVTFAEV-------------------PIARAT 528
Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
R Y+A D+ TL+L +L+ KL S+ D + P +
Sbjct: 529 R--------YAAADADMTLRLQPALEAKLRA-----------AGSLADMFYRLEMPLVPV 569
Query: 609 LVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLL 668
LV+ME G+L+D Y+ + + R +E A + +A P N+ S QL ++L
Sbjct: 570 LVRMEQSGILLDVPYMRALGE--RMGRELAQIEQQIFAIAGKP----FNINSGDQLSEVL 623
Query: 669 FGGKPN 674
FG K N
Sbjct: 624 FGPKIN 629
>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
Length = 938
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN-TETGR 836
A ++ R+ + A+ ++ L S ++ LPL V + RVH N T TGR
Sbjct: 626 AVLEKLRDDHPIVEAILSYRTLAKLKSTYVDALPLL---VDPRTDRVHTDFNQTVTTTGR 682
Query: 837 LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
LS+ PNLQN P +IR+AF+ PG L+ ADY Q+ELRILAHL +L+AF+
Sbjct: 683 LSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAFQ 742
Query: 897 AGGDFHSRTA 906
GGD H+ TA
Sbjct: 743 TGGDVHTLTA 752
>gi|423105652|ref|ZP_17093354.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
gi|376379896|gb|EHS92645.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
Length = 926
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 642 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 697
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 698 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 740
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED + KV N +D +L NYG+++ G DTM + +
Sbjct: 387 YLDAPDQIPRDRVLELLKPLLEDDKVLKVGQNLKYDRGILANYGIELRGIAFDTMLESYI 446
Query: 472 WDS 474
DS
Sbjct: 447 LDS 449
>gi|415770541|ref|ZP_11484884.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348656714|gb|EGY74321.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 933
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 654 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 714 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
Length = 876
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
I + E + L S +I LQ V + R+H N +TGRLS+ PNLQN P
Sbjct: 572 IDDILEYRQLSKLQSTYIEGLQ--KVIQNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVR 629
Query: 851 EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
++ +IR+AF A PGN ++ ADY Q+ELR+LAH+ +SM+ AF+ G D H+ TAM +
Sbjct: 630 LEEGRRIRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKV 689
Query: 910 Y 910
+
Sbjct: 690 F 690
>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 630 IHHRTGRIHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYS 689
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF+ G D H TA ++
Sbjct: 690 QIELRIMAHLSGDKGLLTAFEKGEDIHRATAAEVF 724
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 65/251 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P EDP K+ N +D +VL N+G+ ++G DTM + + +S
Sbjct: 383 VLSQLKPLLEDPKKAKLGQNLKYDKNVLANHGINLNGIAEDTMLESYVLNS--------- 433
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
G R M D A Q + T E GK + + F + +L++ G
Sbjct: 434 ----VGSRHDM--DSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQAG---------- 477
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L+++L+ + LE + +L + Y++
Sbjct: 478 -------------PYAAEDADITLRLHQALRPQ-LEKTGRLQ----------EVYEKIDL 513
Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
P +L +ME G ++ R++ E+ E++A E+EA H + N+
Sbjct: 514 PLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEKEA-----------HEEAGESFNL 562
Query: 659 GSDTQLRQLLF 669
GS QL+ + +
Sbjct: 563 GSPKQLQAIFY 573
>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
Length = 941
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PG+ ++ ADY
Sbjct: 661 VNPNTGRVHTSYGQATAVTGRLASTEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYS 720
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R AV + Q
Sbjct: 721 QIELRIMAHISGDENLLRAFANGEDIHRATASEIFGVDREAVSSEQ 766
>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus HB8]
gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
Length = 834
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
Length = 897
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF D HS TA
Sbjct: 680 RIMAHLSKDKNLLKAFNQNLDIHSATA 706
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K ++ Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNYF-KALLEQD----------KVLYKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + + S
Sbjct: 501 PLTIILNQMEKTGVKIDAAKL--------IQQSASLETSIKELESKCYNLAGQEFKLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
Length = 973
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 812 LQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
L + G RVH S + T TGRLS+ PNLQN P ++ KIR+AF+A PG LI
Sbjct: 684 LIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLI 743
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ADY Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 744 SADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF 783
>gi|444347338|ref|ZP_21155248.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443548872|gb|ELT58000.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 966
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 687 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 746
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 747 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 781
>gi|416074754|ref|ZP_11584683.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444337963|ref|ZP_21151873.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|348006757|gb|EGY47152.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|443545907|gb|ELT55637.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 933
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 654 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 714 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
Length = 928
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ K G++H S N T TGRLS+ PNLQN P + D +IR+AFI + ADY
Sbjct: 648 INKKTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYS 707
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL++ +M++AF G D H+ TA +Y N + + Q
Sbjct: 708 QIELRIMAHLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQ 753
>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
Length = 1015
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
++ L S ++ PL + GR+H + N + T TGRLS+ PNLQN PA ++R
Sbjct: 717 LEKLRSTYLEPL--PKLVDDAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRS 774
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
F A GN L+ ADY Q+ELR+LAH++ ++L AF+ G D H RTA +Y
Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825
>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|444345405|ref|ZP_21153423.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|443542932|gb|ELT53212.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 933
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 654 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 714 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|425063764|ref|ZP_18466889.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
gi|404382318|gb|EJZ78779.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
Length = 930
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|365966721|ref|YP_004948283.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745634|gb|AEW76539.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
Length = 933
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G +I ADY
Sbjct: 654 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+N + +++AF G D H TA ++
Sbjct: 714 QIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIF 748
>gi|359431675|ref|ZP_09222097.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
gi|357921674|dbj|GAA58346.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
Length = 919
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H S + T TGRLS+ PNLQN P ++ +IRQAF+A G+ L+ ADY Q+EL
Sbjct: 643 TGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIEL 702
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +LDAF D H TA ++
Sbjct: 703 RIMAHLSQDKGLLDAFAHDEDVHKATAAEVF 733
>gi|359687343|ref|ZP_09257344.1| DNA polymerase I [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751263|ref|ZP_13307549.1| DNA-directed DNA polymerase [Leptospira licerasiae str. MMD4847]
gi|418756194|ref|ZP_13312382.1| 5'-3' exonuclease, N-terminal resolvase-like domain / 5'-3'
exonuclease, SAM domain / 3'-5' exonuclease /
DNA-directed DNA polymerase multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384115865|gb|EIE02122.1| 5'-3' exonuclease, N-terminal resolvase-like domain / 5'-3'
exonuclease, SAM domain / 3'-5' exonuclease /
DNA-directed DNA polymerase multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273866|gb|EJZ41186.1| DNA-directed DNA polymerase [Leptospira licerasiae str. MMD4847]
Length = 920
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
++T+ E E I L + LIS ++ LP S S K+GR+H S N+
Sbjct: 598 YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVDTLP---SMASPKDGRIHTSYNMTI 654
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKS 890
TGRLS+ PNLQN P EK+ IR+ FI+ + I++ DY Q+ELRI+AH++ +
Sbjct: 655 AATGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFEILSLDYSQIELRIMAHISKDPA 714
Query: 891 MLDAFKAGGDFHSRTAMNMY 910
M+DA+K G D H RTA +Y
Sbjct: 715 MMDAYKKGIDIHKRTAAAIY 734
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 58/243 (23%)
Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR-LWDSSRRTEGGYSLEA 486
P DP+I KV N +D VL+N+G +++ DTM +A L SRR ++++
Sbjct: 398 LGPVLADPNIPKVGQNIKYDLIVLQNHGFEIANIVFDTMIVAYILAPESRR----FNMDD 453
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
L +ED Y+ I+ ++ G K KK+ ++ +A
Sbjct: 454 L-------AEDLLNYKT--------------ITYAELVGTGKNKKNLWEVELDKVA---- 488
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
Y+A D+ TL+LY L+K L + + ++E P
Sbjct: 489 ----------EYAAEDADITLRLYNVLRKSLKQ------------SGLESVFKEIDLPLI 526
Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
+L +ME G+ VD +Y +E+ K + E + + A K N+ S +L++
Sbjct: 527 PVLTQMEKAGIAVDAKYFAELSKDFQREVKDLEKGIYRAAGKE------FNIASTKELQK 580
Query: 667 LLF 669
+LF
Sbjct: 581 ILF 583
>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
Length = 897
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF D HS TA
Sbjct: 680 RIMAHLSKDKNLLKAFNQNLDIHSATA 706
>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
Length = 834
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
gi|62298349|sp|P52028.2|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
polymerase 1
gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
Length = 834
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|422020130|ref|ZP_16366670.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
gi|414101725|gb|EKT63322.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
Length = 934
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ + RVH S + T TGRLS+R PNLQN P
Sbjct: 633 LLEHRSLAKLKSTYTDKLPLM---INPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 689
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAF+A G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 690 EEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVF 748
>gi|407975471|ref|ZP_11156376.1| DNA polymerase I [Nitratireductor indicus C115]
gi|407429099|gb|EKF41778.1| DNA polymerase I [Nitratireductor indicus C115]
Length = 983
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + +T TGRLS+ PNLQN P + KIR AFIA G LI ADY
Sbjct: 698 INAETGRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRAAFIAPRGRKLISADYS 757
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 758 QIELRVLAHVADIPELKKAFADGLDIHAMTASEMF 792
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 56/251 (22%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG- 480
++ L+ DP++ K+ N +D ++ G+++ DTM ++ + D+ + G
Sbjct: 445 KEALDAIRGLMADPAVLKIGQNLKYDWLLMYRLGVEIVNCD-DTMLISYVLDAGTGSHGT 503
Query: 481 -GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539
G+ ++AL+ E ++G + + K+ +G+
Sbjct: 504 VGHGMDALS-----------------------ERWLGHVPIP-------YKELTGSGRNQ 533
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ +++R +Y+A D+ TL+L++ LK +L + + Y+
Sbjct: 534 ITFDMVDIERA-----TAYAAEDADITLRLWQVLKPRL------------AARGLVSVYE 576
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P ++ +ME G+ VDR+ LS + A + + A + +G
Sbjct: 577 RLERPMIPVIGRMEHRGIEVDRQILSRLSGDFAQTAAAMEDEIYELAGER------FTIG 630
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 631 SPKQLGDILFG 641
>gi|414071039|ref|ZP_11407015.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
gi|410806545|gb|EKS12535.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|410110888|dbj|BAM64800.1| DNA polymerase I [Thermus thermophilus]
Length = 834
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|359455121|ref|ZP_09244368.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
gi|358047836|dbj|GAA80617.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357045700|ref|ZP_09107334.1| DNA-directed DNA polymerase [Paraprevotella clara YIT 11840]
gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531365|gb|EHH00764.1| DNA-directed DNA polymerase [Paraprevotella clara YIT 11840]
Length = 923
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + G +H S N T TGRLS+ PNLQN P ++ +IR+AFI PG ADY
Sbjct: 643 INPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYS 702
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ M++AF+ G D H+ TA +Y
Sbjct: 703 QIELRIMAHLSGDPHMIEAFREGHDIHAATAAKIY 737
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 56/249 (22%)
Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
+ ++NEF +ED I K+ N +D VL+NYG+ + G DTM L R
Sbjct: 393 AQKIVNEFKSVYEDERILKIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPELRHGM 452
Query: 481 GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST 540
Y ++E YQ I ++++ G K + ++
Sbjct: 453 DY-----------LAEVYLNYQ--------------TIHIEELIG----PKGKNQKNMAD 483
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ P + + Y+ D+ TLKL + KL E + +D ++E
Sbjct: 484 LPPSQVYE---------YACEDADITLKLKNVFEPKLKE------------EGCYDLFRE 522
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
P +L ME G+ +D E L E + E +NR + H + N+ S
Sbjct: 523 VEMPLMPVLAWMERNGVCIDTEALKETSTLYTKE----MNRLEE--EIHALAGEPFNIAS 576
Query: 661 DTQLRQLLF 669
Q+ ++LF
Sbjct: 577 PKQVGEVLF 585
>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
Length = 992
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V + RVH S ++ T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY
Sbjct: 706 VHPQTKRVHTSYSMAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 765
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 766 QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMF 800
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L ED S+ KV N +D V++ +G+ + GF DTM ++ Y L
Sbjct: 461 LTALKGLLEDASVLKVAQNLKYDYLVMKRHGIVIRGFD-DTMLLS------------YVL 507
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIA 542
EA G A+ D + E ++G I K++ G +GK
Sbjct: 508 EAGVG----------AHGMD----SLSERWLGHTPIPYKEVAG---------SGKSLVTF 544
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
+ ++ + +Y+A D+ TL+L+ LK +L + + Y+
Sbjct: 545 DLVDIDKA-----TAYAAEDADVTLRLWLVLKPRLAAVG------------LARVYERLE 587
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
+P +L ME G+ +DR+ LS + + A + + A + NVGS
Sbjct: 588 RPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFEDEIYELAGER------FNVGSPK 641
Query: 663 QLRQLLFG 670
QL +LFG
Sbjct: 642 QLGDILFG 649
>gi|410087504|ref|ZP_11284207.1| DNA polymerase I [Morganella morganii SC01]
gi|409765948|gb|EKN50046.1| DNA polymerase I [Morganella morganii SC01]
Length = 930
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
GA ++N ++ +E + + + E S+ L + + LPL V K RVH S
Sbjct: 607 GAPSTNEEVL---EELADNHELPRVILEHRSLSKLKTTYTDKLPLM---VDPKTRRVHTS 660
Query: 828 LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
+ T TGRLS+R PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL+
Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRTDEGRRIRQAFIARDGYCIMAADYSQIELRIMAHLS 720
Query: 887 NCKSMLDAFKAGGDFHSRTAMNMY 910
K +L AF G D H TA ++
Sbjct: 721 QDKGLLKAFAEGKDIHRATAAEVF 744
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 67/267 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P ED I+K+ N FD ++ENYG+++ G DTM + + +S G +
Sbjct: 403 VLRVMKPILEDEKIRKIGQNLKFDRGIMENYGVELRGIAFDTMLESYVLNS---VAGRHD 459
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L DR + K T E GK G+++L + P
Sbjct: 460 MDSL-ADRHL-----------NYKTTTFEDIAGK-------GKKQLTFNQ--------IP 492
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+EE +Y+A D+ TL L+++L +L KS+ YQ+
Sbjct: 493 LEEAA--------NYAAEDADITLLLHQALYPQL-----------EAEKSLLHVYQDIEM 533
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+L+D L+ E A ++ K A + N+ S Q
Sbjct: 534 PLVPVLSRMERTGVLIDANVLA----AQSVELTARLDELEKQAFAIA--GEEFNLSSPKQ 587
Query: 664 LRQLLF------------GGKPNSKDD 678
L+ +LF GG P++ ++
Sbjct: 588 LQTILFEKLNLPVVKKTPGGAPSTNEE 614
>gi|421492965|ref|ZP_15940323.1| POLA [Morganella morganii subsp. morganii KT]
gi|455737808|ref|YP_007504074.1| DNA polymerase I [Morganella morganii subsp. morganii KT]
gi|400192593|gb|EJO25731.1| POLA [Morganella morganii subsp. morganii KT]
gi|455419371|gb|AGG29701.1| DNA polymerase I [Morganella morganii subsp. morganii KT]
Length = 930
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
GA ++N ++ +E + + + E S+ L + + LPL V K RVH S
Sbjct: 607 GAPSTNEEVL---EELADNHELPRVILEHRSLSKLKTTYTDKLPLM---VDPKTRRVHTS 660
Query: 828 LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
+ T TGRLS+R PNLQN P + +IRQAFIA G ++ ADY Q+ELRI+AHL+
Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRTDEGRRIRQAFIARDGYCIMAADYSQIELRIMAHLS 720
Query: 887 NCKSMLDAFKAGGDFHSRTAMNMY 910
K +L AF G D H TA ++
Sbjct: 721 QDKGLLKAFAEGKDIHRATAAEVF 744
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 67/267 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P ED I+K+ N FD ++ENYG+++ G DTM + + +S G +
Sbjct: 403 VLRVMKPILEDEKIRKIGQNLKFDRGIMENYGVELRGIAFDTMLESYVLNS---VAGRHD 459
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L DR + K T E GK G+++L + P
Sbjct: 460 MDSL-ADRHL-----------NYKTTTFEDIAGK-------GKKQLTFNQ--------IP 492
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+EE +Y+A D+ TL L+++L +L KS+ YQ+
Sbjct: 493 LEEAA--------NYAAEDADITLLLHQALYPQL-----------EAEKSLLHVYQDIEM 533
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+L+D L+ AE A ++ K A + N+ S Q
Sbjct: 534 PLVPVLSRMERTGVLIDANVLA----AQSAELTARLDELEKQAFAIA--GEEFNLSSPKQ 587
Query: 664 LRQLLF------------GGKPNSKDD 678
L+ +LF GG P++ ++
Sbjct: 588 LQTILFEKLNLPVVKKTPGGAPSTNEE 614
>gi|421871274|ref|ZP_16302896.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
gi|372459901|emb|CCF12445.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
Length = 897
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
+ GK GRVH N T TGRLS+ PNLQN P ++ KIR+AF+ N I+A DY
Sbjct: 616 IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH++ ++++AF D H+RTAM+++
Sbjct: 676 SQIELRILAHISKDPNLIEAFVNNMDIHTRTAMDVF 711
>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
Length = 934
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ + RVH S + T TGRLS+R PNLQN P
Sbjct: 633 LLEHRSLAKLKSTYTDKLPLM---INPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 689
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ +IRQAF+A G ++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 690 EEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVF 748
>gi|392534064|ref|ZP_10281201.1| DNA polymerase I [Pseudoalteromonas arctica A 37-1-2]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|423117136|ref|ZP_17104827.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
gi|376376437|gb|EHS89215.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
Length = 929
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 645 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 700
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 743
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED + KV N +D VL NYG+++ G DTM + +
Sbjct: 390 YLDAPDQIPRDRVLELLKPLLEDDKVLKVGQNLKYDRGVLANYGIELRGIAFDTMLESYI 449
Query: 472 WDS 474
DS
Sbjct: 450 LDS 452
>gi|417851053|ref|ZP_12496845.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220123|gb|EGP05692.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 930
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|339326741|ref|YP_004686434.1| DNA polymerase I [Cupriavidus necator N-1]
gi|338166898|gb|AEI77953.1| DNA polymerase I [Cupriavidus necator N-1]
Length = 938
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PG+ ++ ADY
Sbjct: 658 VNPQTGRVHTSYGQATAVTGRLASTEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYS 717
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R AV + Q
Sbjct: 718 QIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQ 763
>gi|417853762|ref|ZP_12499110.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219066|gb|EGP04780.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 930
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|404492180|ref|YP_006716286.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
Length = 891
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H S N T TGRLS+ PNLQN P ++ +IR+AF+ GN L+ ADY Q+EL
Sbjct: 615 TGRIHTSFNQAVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVEL 674
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RILAH+A+ ++ ++F G D H+RTA ++
Sbjct: 675 RILAHMADEPALKESFAHGEDIHARTASEIF 705
>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 976
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
E + I L + ++ L+S +I L +S K GRVH + N T TGRLS+ PNLQ
Sbjct: 651 EEHEIIPFLIKHRTLSKLLSTYIDALPNL-ISEKTGRVHTNFNQAATATGRLSSSNPNLQ 709
Query: 846 NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
N P + +IR+AF+ G L+ ADY Q+ELRILAHLAN + +++AF D HS T
Sbjct: 710 NIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEILINAFHKNDDIHSLT 769
Query: 906 AMNMY 910
A ++
Sbjct: 770 ARLIF 774
>gi|423111124|ref|ZP_17098819.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
gi|376377141|gb|EHS89913.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
Length = 929
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 645 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 700
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 743
>gi|359441073|ref|ZP_09230978.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
gi|358037086|dbj|GAA67227.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
Length = 911
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF 724
>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
Length = 922
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G L+ DY Q+EL
Sbjct: 645 SGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIEL 704
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
RI+AHL+ K +L+AF AG D H TA ++ ++V T Q
Sbjct: 705 RIMAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQ 746
>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella novicida U112]
gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella novicida FTE]
gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
Length = 897
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF D HS TA
Sbjct: 680 RIMAHLSKDKNLLKAFNQNLDIHSATA 706
>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 896
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIRQAF+A ++ ADY Q+EL
Sbjct: 619 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIEL 678
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L AF G D HS TA
Sbjct: 679 RIMAHLSKDKNLLKAFNQGLDIHSATA 705
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P F D KV HN+ FD VL YG+K+ DTM MA + SS G +
Sbjct: 370 VLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQVNDTMIMAYVLKSS----GKHD 425
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + + + AY T G GR +L D
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLTLDQ--------ID 458
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E++ + Y+A D+ T +LY K L + + ++ Y
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSNVEM 499
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL ME G+ +D L EQ A + K C D + N+ S
Sbjct: 500 PLTIILNNMERIGVKIDATKL--------IEQSANLEDSIKELEIKCYDLAGQEFNLSSP 551
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 552 VQLREILF 559
>gi|421263814|ref|ZP_15714835.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401689101|gb|EJS84601.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 930
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 769 KGAVASNNKIFATEQEARE-ACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVH 825
KGA ++N ++ E+ A E A I L E + L S + LPL V+ GRVH
Sbjct: 607 KGAPSTNEEVL--EELAYEHALPKI--LVEHRGLSKLKSTYTDKLPLM---VNKDTGRVH 659
Query: 826 CSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+ELRI+AH
Sbjct: 660 TSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAH 719
Query: 885 LANCKSMLDAFKAGGDFHSRTAMNMY 910
L+ K +++AF G D H TA ++
Sbjct: 720 LSQDKGLINAFNEGKDIHRSTAAEIF 745
>gi|400406153|ref|YP_006588901.1| DNA polymerase I [secondary endosymbiont of Heteropsylla cubana]
gi|400364406|gb|AFP85473.1| DNA polymerase I [secondary endosymbiont of Heteropsylla cubana]
Length = 932
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R+H S + T TGRLS+R+PNLQN P + + IR AFIA PG I+ADY Q+ELRI
Sbjct: 655 RIHTSYHQAITVTGRLSSRKPNLQNIPVRDDEGRHIRNAFIATPGTLFIIADYSQIELRI 714
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AH++ ++L AF D HS TA ++
Sbjct: 715 MAHISRDATLLKAFSVNKDIHSVTASEIF 743
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 395 FSIYSGPEADFGNGKSCIWV-DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
F+I SG +A G + + V LD +L+ P ED +I K+ N F +LE
Sbjct: 373 FAIQSGEKAYLPIGHNYLNVPKQLDLSV--VLSVLKPILEDSTINKIGQNLKFVYKILEQ 430
Query: 454 YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
Y +K++G + DTM + + DS+ GG+ ++ L
Sbjct: 431 YNIKLTGMNFDTMLESYIIDSA--ASGGHEIDVLV 463
>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
Length = 972
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+S GRVH + + T TGRLS+ PNLQN P ++ KIR+AF+A PG+ L+ DY
Sbjct: 692 ISPVTGRVHTAFALAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYS 751
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR++A +A+ +++ DAF+ G D H+ TA ++
Sbjct: 752 QIELRLVAEMADIQALKDAFRDGLDIHAATAAQVF 786
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 57/238 (23%)
Query: 432 FEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
EDPS+ K+ HN+ FD+ + G+ VS D+M ++ + + G+ ++ L
Sbjct: 454 LEDPSVLKIGHNFKFDHQLFGRNGITVSPVD-DSMLISYVLEGGSH---GHGMDEL---- 505
Query: 492 KVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE 551
+E AY I K++ G K +I+ R
Sbjct: 506 ---AELHLAYTP--------------IPFKEVCGTGK-------NQIT-------FDRVP 534
Query: 552 RELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVK 611
+ ++Y+A D+ TL+L+ LK +L++ M Y+ +P ++
Sbjct: 535 LDKALAYAAEDADITLRLWTLLKPRLVD------------SRMVTVYETLDRPLVPVVAN 582
Query: 612 METEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
ME EG+ +D++ L AR Q+ +V H + N+GS QL ++LF
Sbjct: 583 MEREGVRIDQQAL------ARLSQDLSVRLAEIEKEVHALAGQSFNIGSPKQLGEILF 634
>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
Length = 934
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P K+ +IRQAF+A G ++ DY
Sbjct: 653 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNKEGRRIRQAFVAPHGWKILAVDYS 712
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++L+AF AG D H+ TA
Sbjct: 713 QIELRIMAHLSQDRALLEAFSAGKDIHAATA 743
>gi|407790686|ref|ZP_11137778.1| DNA polymerase I [Gallaecimonas xiamenensis 3-C-1]
gi|407203023|gb|EKE73011.1| DNA polymerase I [Gallaecimonas xiamenensis 3-C-1]
Length = 923
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + K GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G
Sbjct: 639 LPLL---IHDKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRTEEGRRIRQAFVAPKGRK 695
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ +L AF G D H+ TA ++
Sbjct: 696 ILAADYSQIELRIMAHLSGDDGLLTAFAQGKDIHAATAAEVF 737
>gi|333891503|ref|YP_004465378.1| DNA polymerase I [Alteromonas sp. SN2]
gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
Length = 935
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ K+RQAF+ G ++ ADY
Sbjct: 654 INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYS 713
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ + +LDAF G D H TA ++ + V T Q
Sbjct: 714 QIELRIMAHLSGDEGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQ 759
>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
Length = 938
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PG+ ++ ADY
Sbjct: 658 VNPQTGRVHTSYGQATAVTGRLASTEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYS 717
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ +++L AF G D H TA ++ R AV + Q
Sbjct: 718 QIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQ 763
>gi|333906557|ref|YP_004480143.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
gi|333476563|gb|AEF53224.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
Length = 922
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
K GR+H S + T TGRLS+ PNLQN P + +IRQAFIA G L+ ADY Q+E
Sbjct: 645 KTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTAEGRRIRQAFIAPEGYKLVAADYSQIE 704
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ + +LDAF D H TA ++
Sbjct: 705 LRIMAHLSQDQGLLDAFANNADVHRATAAEVF 736
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 63/250 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P+ ED + KV + +D +VL NYG+ + G DTM + +++S
Sbjct: 396 VLEQLKPWLEDETAAKVGQHLKYDANVLNNYGIALRGIVYDTMLESYVFNSV-------- 447
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
+ + DM G+ E F+ +S +DI G+ +K
Sbjct: 448 ----------------SSRHDM--GSLAEKFLDHKCVSFEDIAGKGAKQK---------- 479
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQE 600
+ + E Y+A D+ TL+L++++ W +L+ P + +++
Sbjct: 480 ----TFNQIDLEQAAFYAAEDADITLRLHQAI--------WPQLEKTP----ELVSIFKD 523
Query: 601 YWQPFGEILVKMETEGMLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
P +L KME G L+D E L ++ ++A QE + H + N+
Sbjct: 524 IECPLVPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIK-------AHEAAGESFNLS 576
Query: 660 SDTQLRQLLF 669
S QL+ +LF
Sbjct: 577 SPKQLQVILF 586
>gi|387128320|ref|YP_006296925.1| DNA polymerase I [Methylophaga sp. JAM1]
gi|386275382|gb|AFI85280.1| DNA polymerase I [Methylophaga sp. JAM1]
Length = 904
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 68/114 (59%), Gaps = 9/114 (7%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q V+ + GRVH S + T TGRLS+ PNLQN P + KIR+AF+A G
Sbjct: 620 LPQQ---VNQQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTETGRKIREAFVAGKGAK 676
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
++ ADY Q+ELRI+AHL+ KS+L AF G D H TA ++ VE QV
Sbjct: 677 ILAADYSQIELRIMAHLSGDKSLLTAFAEGEDIHRHTASEIF-----GVEAEQV 725
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 82/296 (27%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P EDP KV N +D H+L N+G+ + G DTM + + DS+
Sbjct: 382 PLLEDPKALKVGQNLKYDRHILLNHGINLQGIAHDTMLQSYVLDST-------------- 427
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
A + DM + E ++G+ I +DI G+ K + + + +P
Sbjct: 428 ----------ATRHDMD--SLAEKYLGRSTIHFEDIAGKGKKQLTFNEIGLEEASP---- 471
Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
Y+ D+ TL+L+ L K+ + +P S+ Y+E P
Sbjct: 472 ----------YACEDADITLQLHHVLWPKV---------QAIP--SLETVYRELEMPLLP 510
Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAA-VNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
+L +E G+ +D L + +++Q A ++R K A H N+GS QL++
Sbjct: 511 VLNTLERNGVHIDIFMLQQ-----QSDQLALDIDRLEKEA--HASAGTKFNLGSPKQLQE 563
Query: 667 LLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT--LRSIGVDLP 720
+L+ D + LP+ + K P K PS N+ L G +LP
Sbjct: 564 ILY--------DQQQLPVRK--KTP---------KGQPSTAENVLQELADDGYELP 600
>gi|402771296|ref|YP_006590833.1| DNA polymerase I [Methylocystis sp. SC2]
gi|401773316|emb|CCJ06182.1| DNA polymerase I [Methylocystis sp. SC2]
Length = 997
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + KIR+AF++ PG+ LI ADY
Sbjct: 713 INAETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVSAPGHVLISADYS 772
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF D H+ TA M+
Sbjct: 773 QIELRLLAHIADIPQLRRAFAENLDIHAMTASEMF 807
>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
Length = 931
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INSETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFQQGKDIHAATA 740
>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
Length = 928
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + V+G RVH S + T TGRLS+ PNLQN P + +IRQAFIA P
Sbjct: 643 LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAGPDKR 699
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 IVAADYSQIELRIMAHLSQDKGLLAAFAQGEDIHRATASEVF 741
>gi|340347219|ref|ZP_08670331.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
gi|433652418|ref|YP_007278797.1| DNA polymerase I [Prevotella dentalis DSM 3688]
gi|339609789|gb|EGQ14652.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
gi|433302951|gb|AGB28767.1| DNA polymerase I [Prevotella dentalis DSM 3688]
Length = 920
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
Q+ R+ + + + L+ ++ L V+ + GR+H S N T TGRLS+
Sbjct: 607 QQLRDKAPIVDDILNYRGLKKLLGTYVEALP-KLVNPRTGRIHTSFNQAVTATGRLSSSD 665
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P + D +IR+ F+ PG ADY Q+ELRI+AHL+ ++M++AF+ G D
Sbjct: 666 PNLQNIPVRDDDGKEIRKCFVPEPGCRFFSADYSQIELRIMAHLSGDENMIEAFREGFDI 725
Query: 902 HSRTAMNMYPHIRNAVETGQ 921
H TA ++ AV Q
Sbjct: 726 HRATAAKIWHKEMAAVTDAQ 745
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 56/246 (22%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
+N F +EDP I KV N +D VL YG+ V G DTM + Y
Sbjct: 394 VNIFKSLYEDPEILKVGQNIKYDYEVLRQYGVDVQGPMFDTMLAHYVLQPELHHNMDYMA 453
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
E L R V E+ +KG G+ +M+D+ R+ +
Sbjct: 454 ETLLNYRTVHIEELIG-----AKGR------GQRNMRDLTPRQVYE-------------- 488
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
Y+ D+ TL+L L+ +L E + +++ P
Sbjct: 489 -------------YACEDADVTLRLKNVLEPRLAEAGAE------------RLFRDIEMP 523
Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
+L ME G+ +D L+ + E + + A K N+ S Q+
Sbjct: 524 LVRVLADMELNGVCLDTAALAATRRSFTERMEQYEHHAYELAGKS------FNISSPKQV 577
Query: 665 RQLLFG 670
+LFG
Sbjct: 578 GDILFG 583
>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
Length = 949
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
Length = 1024
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G+ LI ADY Q+ELR+
Sbjct: 746 RVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLISADYSQIELRL 805
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + +AF AG D H+ TA M+
Sbjct: 806 LAHIADIPQLREAFAAGIDIHAATASAMF 834
>gi|380693094|ref|ZP_09857953.1| DNA polymerase I [Bacteroides faecis MAJ27]
Length = 949
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VLENYG++V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464
>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
Length = 920
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
F T +E + + ++ + E + L+ ++ L ++ + G +H S N T
Sbjct: 599 FVTSEEVLQQLENKSPIVAKILEYRGLKKLLGTYVDALPKL-INPRTGHIHTSFNQAITA 657
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +D +IR+ FI PG ADY Q+ELR++AHL++ K+M++
Sbjct: 658 TGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIE 717
Query: 894 AFKAGGDFHSRTAMNMY 910
AF G D H+ TA +Y
Sbjct: 718 AFMHGYDIHAATAAKIY 734
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 92/254 (36%), Gaps = 64/254 (25%)
Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
+ ++N F P +E+P I KV N +D VL NYG+ + G DTM + R
Sbjct: 390 AQKIVNIFKPIYENPDILKVGQNLKYDLEVLHNYGVTLKGKMFDTMLAHYVIQPELRHNM 449
Query: 481 GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST 540
Y E L R + + DE
Sbjct: 450 DYMAETLLNYRTI---------------HIDE---------------------------L 467
Query: 541 IAPVEELQREEREL----WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
I P + Q+ REL Y+A D+ TL+L L+ KL EM + D
Sbjct: 468 IGPRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLETKLKEMECE------------D 515
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
+ P +L ++E G+++D + L E + + + + A +
Sbjct: 516 LFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLAGEE------F 569
Query: 657 NVGSDTQLRQLLFG 670
N+ S Q+ +LFG
Sbjct: 570 NISSPKQVGDILFG 583
>gi|443474136|ref|ZP_21064157.1| DNA polymerase I [Pseudomonas pseudoalcaligenes KF707]
gi|442905071|gb|ELS29986.1| DNA polymerase I [Pseudomonas pseudoalcaligenes KF707]
Length = 915
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 634 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPEGYKLLAADY 693
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA + +LDAF+ G D H TA ++
Sbjct: 694 SQIELRIMAHLAKDEGLLDAFRHGRDVHRATAAEVF 729
>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
Length = 834
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
Length = 926
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 645 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K +L AF G D H TA ++ V T Q
Sbjct: 705 QIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQ 750
>gi|381165954|ref|ZP_09875173.1| DNA polymerase I (POL I) [Phaeospirillum molischianum DSM 120]
gi|380684938|emb|CCG39985.1| DNA polymerase I (POL I) [Phaeospirillum molischianum DSM 120]
Length = 936
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ GRVH S ++ T TGRLS+ PNLQN P ++ KIR+AFIA PG LI AD
Sbjct: 654 AQINPATGRVHTSFSLAATTTGRLSSSDPNLQNIPIRTEEGRKIRRAFIAKPGFCLISAD 713
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR++AH+A + + AF G D H+ TA ++
Sbjct: 714 YSQIELRLVAHVAGIEGLRTAFAEGRDIHAITASQVF 750
>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
Length = 926
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 649 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 708
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 709 LRIMAHLSGDPGLVSAFESGADVHRATAAEVF 740
>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
Length = 932
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ +++ GRVH S L TGRL++ PNLQN P ++ +IR+
Sbjct: 636 LSKLKSTYTDALQ-THIDPDTGRVHTSYLQTGASTGRLASTDPNLQNIPIRTEEGRRIRE 694
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A G L+ DY Q+ELRILAH+A +SM AF+ G D H+ TA M+
Sbjct: 695 AFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMF 745
>gi|420142663|ref|ZP_14650253.1| DNA polymerase I [Pseudomonas aeruginosa CIG1]
gi|403244573|gb|EJY58439.1| DNA polymerase I [Pseudomonas aeruginosa CIG1]
Length = 913
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPPGYKLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +LDAF+ D H TA ++
Sbjct: 692 SQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVF 727
>gi|417844401|ref|ZP_12490445.1| DNA polymerase I [Haemophilus haemolyticus M21639]
gi|341956854|gb|EGT83270.1| DNA polymerase I [Haemophilus haemolyticus M21639]
Length = 935
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 612 KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA S+I ADY Q+ELRI+AHL
Sbjct: 666 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARESYSIIAADYSQIELRIMAHL 725
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 726 SGDQGLINAFSQGKDIHRTTAAEIF 750
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 142/355 (40%), Gaps = 87/355 (24%)
Query: 323 SENENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKI 379
S EN+ K++I R+K + + + ++ ++AAK + DTE +
Sbjct: 324 SAVENTPKIQIDRTKYETLLTQTDLTRWIEKLNAAKLI-------------TVDTETDSL 370
Query: 380 DVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGG----RDLLNEFAPFFEDP 435
D V I F++ +G A + +D LD L P E+P
Sbjct: 371 DYMSANLVG----ISFALENGEAAYL-----PLQLDYLDAPKILEKSTALTAIKPILENP 421
Query: 436 SIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMS 495
+I K+ N FD + +G+++ G DTM ++ +S+ G ++++ L ++ +
Sbjct: 422 NIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNIDDLA--KRYLG 475
Query: 496 EDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELW 555
+ ++ KG G+++ I P+E+
Sbjct: 476 HETIEFESIAGKGK------GQLTFNQI-------------------PLEQ--------A 502
Query: 556 ISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
Y+A D+ T+KL + L W KL +P ++ + Y+ P +L +ME
Sbjct: 503 TEYAAEDADVTMKLQQVL--------WLKLQEEP----TLVELYKTMELPLLHVLSRMER 550
Query: 615 EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
G+L+D + L + E A + + A + + N+ S QL+++LF
Sbjct: 551 TGVLIDSDALF----IQSNEIAARLTALEEQAYELA--GQPFNLASTKQLQEILF 599
>gi|334702620|ref|ZP_08518486.1| DNA polymerase I [Aeromonas caviae Ae398]
Length = 916
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 591 KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 645 SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 704
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
+ K +L AF G D H TA ++ +AV
Sbjct: 705 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAV 736
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
+ A DTE +D + V + F++ G A FG+ V L + +L
Sbjct: 338 LFAFDTETTSLDYMEARVVG----VSFAVEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 390
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P EDP+ KV N +D +VL N+G+++ G DTM + + +S T + +++
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 447
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
L R+ ++ + ++++ KG + +++ I
Sbjct: 448 LA--RRYLNVETISFEEIAGKG------VKQLTFNQI----------------------- 476
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
E E Y+A D+ TL+L+++L W KL +P + + E P
Sbjct: 477 ----ELEQAAPYAAEDADITLRLHQTL--------WGKLSAEP----GLAKVFSEIELPL 520
Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
+L +ME G ++ + L + + E E + K A H + N+ S QL
Sbjct: 521 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 574
Query: 666 QLLF 669
++LF
Sbjct: 575 EILF 578
>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
Length = 923
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + G +H S N T TGRLS+ PNLQN P ++ +IR+AFI PG ADY
Sbjct: 643 INPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYS 702
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ M++AF+ G D H+ TA +Y
Sbjct: 703 QIELRIMAHLSGDPHMIEAFREGHDIHAATAAKVY 737
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 56/249 (22%)
Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
+ ++NEF +ED I K+ N +D VL+NYG+ + G DTM L R
Sbjct: 393 AQKIVNEFKSVYEDERILKIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPELRHGM 452
Query: 481 GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST 540
Y ++E YQ I ++++ G K + ++
Sbjct: 453 DY-----------LAEVYLNYQ--------------TIHIEELIG----PKGKNQKNMAD 483
Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
+ P + + Y+ D+ TLKL + KL E + +D ++E
Sbjct: 484 LPPSQVYE---------YACEDADITLKLKNVFEPKLKE------------EGCYDLFRE 522
Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
P +L ME G+ +D E L E + E H + N+ S
Sbjct: 523 VEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEI------HALAGEPFNIAS 576
Query: 661 DTQLRQLLF 669
Q+ ++LF
Sbjct: 577 PKQVGEVLF 585
>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
Length = 949
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease/3'->5'
polymerase/3'->5' exonuclease [Pseudoalteromonas
haloplanktis TAC125]
gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas haloplanktis TAC125]
Length = 911
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ K RVH S + T TGRLS+ PNLQN P ++ +IR+AFIA G
Sbjct: 626 LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D HS TA ++
Sbjct: 683 IVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVF 724
>gi|388602773|ref|ZP_10161169.1| DNA polymerase I [Vibrio campbellii DS40M4]
Length = 930
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
Length = 915
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|398355812|ref|YP_006401276.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
gi|390131138|gb|AFL54519.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
Length = 1004
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 823 RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH C T TGRLS+ PNLQN P + KIR AF+A PG L+ ADY Q+ELR+
Sbjct: 726 RVHTCYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFVATPGRKLVSADYSQIELRV 785
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 786 LAHVADIPQLRQAFADGVDIHAMTASEMF 814
>gi|343510744|ref|ZP_08747955.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
gi|343516251|ref|ZP_08753292.1| DNA polymerase I [Vibrio sp. N418]
gi|342796671|gb|EGU32344.1| DNA polymerase I [Vibrio sp. N418]
gi|342800959|gb|EGU36453.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
Length = 933
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 652 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKILAVDYS 711
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 712 QIELRIMAHLSGDKALLEAFREGKDIHAATA 742
>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
Length = 976
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + + TGRLS+ PN+QN P + +IR AFIA G LI DY Q+EL
Sbjct: 696 TGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDYSQIEL 755
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R++AH+A +SM++AFK G D H+RTA ++
Sbjct: 756 RLVAHVAGEQSMIEAFKDGIDIHARTASEVF 786
>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
Length = 914
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH + TGRL++ PNLQN P ++ +IR+AFIA PGN +I ADY
Sbjct: 634 VNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPIRSEEGRRIREAFIASPGNKIISADYS 693
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL++ S+L AF G D H TA ++
Sbjct: 694 QIELRIMAHLSDDASLLKAFHDGQDVHRATASEIF 728
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 56/246 (22%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P+ E+P KV N +D+HVL NYG+++ G DT+ + + +S RR +
Sbjct: 388 VLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIRLQGIVHDTLLESYVLESHRR----HD 443
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ + + +Y KG + GF D A ++T
Sbjct: 444 MDSLS--ERFLDYKPVSYTDICGKGASQIGF-----------------DEIAIDVAT--- 481
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
Y+A D+ TL+L++S+ +L E + Y++
Sbjct: 482 -------------HYAAEDADVTLQLHQSMWPRLKE-----------NDGLRFIYEKIEI 517
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L KME G+L+D ++K+ +E V + + + N+ S Q
Sbjct: 518 PTSIVLQKMERNGVLID------VDKLNVQSRELGVKMDSLQENAYVTAGQPFNLNSPKQ 571
Query: 664 LRQLLF 669
L +LLF
Sbjct: 572 LGELLF 577
>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
Length = 932
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ ++++ + GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 636 LSKLKSTYTDALQ-NHINAETGRVHTSYSIAGANTGRLASTDPNLQNIPIRSEEGRRIRE 694
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA G L+ DY Q+ELRILAH+A+ S+ AF G D H+ TA M+
Sbjct: 695 AFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIHAMTASEMF 745
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 57/246 (23%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P +D SI K+ N +D + G+ V+ DTM M+ ++ G +
Sbjct: 406 VLSMLKPMLQDDSILKIGQNMKYDAKIFARCGVDVAPID-DTMLMSYAQNAGLHNHGMDT 464
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
L D G+T I +K + G K S I
Sbjct: 465 L------------------SDRLLGHT------PIPIKSLLGTGK----------SAIT- 489
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
R + + Y+A D+ TL+L++ LK +L K + Y+ +
Sbjct: 490 ---FDRVDVAEAVKYAAEDADITLRLWQHLKPQLHV------------KGVTTVYETLER 534
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+ VDR+ LS + A A++ A + A H + NVGS Q
Sbjct: 535 PLVPVLAEMEMTGIKVDRDTLSRMSN-AFAQKMAGLE-----AEIHELAGRSFNVGSPKQ 588
Query: 664 LRQLLF 669
L ++LF
Sbjct: 589 LGEILF 594
>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
Length = 940
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ GRVH + + T TGRLS+ PNLQN P ++ +IRQAF+A PG LI ADY
Sbjct: 660 DIHTHTGRVHSAFHQAVTATGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADY 719
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + + AF AG D H TA ++
Sbjct: 720 SQIELRIMAHLSEDERLCAAFAAGEDIHRATAAEVF 755
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 132/318 (41%), Gaps = 78/318 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + P+ ED S KV N FD+H+L N+G+ + G DTM + + DS
Sbjct: 414 VLADLKPWLEDASRTKVMQNAKFDSHMLANHGITLRGVLFDTMLESYVLDS--------- 464
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
T R M Y GR + + AGK +
Sbjct: 465 ----TATRHDMDSLAAKY----------------------LGRSTITFEDIAGKGAKALS 498
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E+ E+ Y+A D+ T +L + L KL S + D + V Y+ Q
Sbjct: 499 FPEIHLEQAG---PYAAEDADVTGQLQQCLWPKL---SVEPDLRSV--------YETIEQ 544
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P E+LV ME G+ VDR L+ I+ A E+ AAV + A K + N+GS Q
Sbjct: 545 PLIEVLVAMERAGVRVDRGELA-IQGKAIGERIAAVE---QAAFKEA--GREFNLGSTKQ 598
Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTE--------GVIAEGKKTPS---KFRNIT- 711
L++LLF D LP+ + K P E G + P+ +R ++
Sbjct: 599 LKELLF--------DELKLPVGK--KTPKGEPSTDEEALGELVGSHPLPALILDYRGLSK 648
Query: 712 LRSIGVD-LPTEMYTATG 728
L+S +D LP +++T TG
Sbjct: 649 LKSTYIDRLPEDIHTHTG 666
>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
Length = 949
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKVY 763
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
Length = 915
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LQDVTTDQ 740
>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
Length = 949
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VLENYG++V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464
>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
Length = 687
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++ ++H N T+TGRLS+ PNLQN ++ +IR+AF+A G L+ ADY Q+E
Sbjct: 410 QDSKIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQKGYKLLSADYSQIE 469
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+AN M++AFK G D H+RTA +++
Sbjct: 470 LRMLAHMANETHMIEAFKEGADIHNRTASHIF 501
>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
Length = 201
Score = 89.4 bits (220), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 14 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 73
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 74 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 102
>gi|390939766|ref|YP_006403503.1| DNA polymerase I [Sulfurospirillum barnesii SES-3]
gi|390192873|gb|AFL67928.1| DNA polymerase I [Sulfurospirillum barnesii SES-3]
Length = 885
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARR 841
QE + I+ + E + L S +I PL + RVH S + T TGRLS++
Sbjct: 577 QELLDKHPVIAKILEYRELYKLRSTYIEPLLKLSKESPKSRVHTSFIQTGTATGRLSSKD 636
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P ++R F+A G +LI DY Q+ELR+LAH + ++M++AF+ G D
Sbjct: 637 PNLQNIPVKTALGREVRGGFVAKEGYTLIGIDYSQIELRLLAHFSGDEAMVNAFREGKDI 696
Query: 902 HSRTAMNMY 910
H TA+ ++
Sbjct: 697 HQETALKLF 705
>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
Length = 875
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
D I + + + L S +I L+ + +G+VH N T+TGRLS+ PNLQN P
Sbjct: 568 DIIPEILQYRQLGKLQSTYIEGLK-KVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIP 626
Query: 849 ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
++ KIR AF+ + PG + ADY Q+ELR+LAH+A+ + ++DAFK D H++TAM
Sbjct: 627 IRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAM 686
Query: 908 NMY 910
+++
Sbjct: 687 DVF 689
>gi|397697495|ref|YP_006535378.1| DNA polymerase I [Pseudomonas putida DOT-T1E]
gi|397334225|gb|AFO50584.1| DNA polymerase I [Pseudomonas putida DOT-T1E]
Length = 915
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|383115770|ref|ZP_09936525.1| DNA polymerase I [Bacteroides sp. D2]
gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
Length = 949
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKVY 763
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|383124841|ref|ZP_09945502.1| DNA polymerase I [Bacteroides sp. 1_1_6]
gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
Length = 949
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VLENYG++V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464
>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
gi|260620957|gb|EEX43828.1| DNA-directed DNA polymerase [Bacteroides finegoldii DSM 17565]
Length = 930
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 609 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 667
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 668 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 727
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 728 AFLSNHDIHAATAAKIY 744
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ S KV N +D VL+NYG++V G DTM
Sbjct: 403 IVNEFRPVFENESSLKVGQNIKYDMIVLQNYGVEVKGPLFDTM 445
>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
Length = 971
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T GRL++ PNLQN P + +IRQAFIA PG+ LI ADY Q+ELR+
Sbjct: 693 RVHTSYQLAAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRL 752
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+ + + AFKAG D H+ TA M+
Sbjct: 753 LAHIGDIPELKRAFKAGLDIHAATASEMF 781
>gi|386009788|ref|YP_005928065.1| protein PolA [Pseudomonas putida BIRD-1]
gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
Length = 915
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
Length = 936
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ GRVH S +I TGRL++ PNLQN P + +IR+AF+A PGN ++ DY
Sbjct: 654 HINPDTGRVHTSYSIAGAITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDY 713
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A ++ AF G D H+ TA M+
Sbjct: 714 SQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMF 749
>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
Length = 951
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N + E A++ L E + L S + LP S V+ K GRVH
Sbjct: 628 KGAPSTNEDVL--ETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLP---SMVNKKTGRVHT 682
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ + IRQAFIA G +I ADY Q+ELRI+AHL
Sbjct: 683 SYHQAVTATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELRIMAHL 742
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
+ ++ AF G D H TA ++ N V + Q
Sbjct: 743 SQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQ 778
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 60/247 (24%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
L + P E+PSI+KV N +D + N+ ++++G DTM + + DS+ R G
Sbjct: 427 LAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGRHNMG--- 483
Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
+SE +Q I + I G K KK + KI+
Sbjct: 484 --------ALSERYLGHQ--------------VIEFESIAG--KGKKQVTFDKIAIAQAT 519
Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWK-LDGKPVPGKSMFDFYQEYWQ 603
E Y+A D+ T+KL++ L W+ L P S+ + +
Sbjct: 520 E------------YAAEDADITMKLHQVL--------WQELQQSP----SLVKVFNDIEL 555
Query: 604 PFGEILVKMETEGMLVDRE-YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P ++L KME G+L+D + L + EK+AR +++ ++ N+ S
Sbjct: 556 PLVKVLSKMERNGVLIDSQALLKQSEKIARRLTALEQQVYQEAGAE-------FNLASTK 608
Query: 663 QLRQLLF 669
QL+++LF
Sbjct: 609 QLQEILF 615
>gi|421523055|ref|ZP_15969688.1| DNA polymerase I [Pseudomonas putida LS46]
gi|402753160|gb|EJX13661.1| DNA polymerase I [Pseudomonas putida LS46]
Length = 915
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|433656420|ref|YP_007273799.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
gi|432507108|gb|AGB08625.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
Length = 931
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKILAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 740
>gi|418522210|ref|ZP_13088248.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410701574|gb|EKQ60095.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
Length = 949
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VLENYG++V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464
>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
Length = 887
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
+ + E ++ L S ++ PL + G++ R+H N + T TGRLS+ +PNLQN P
Sbjct: 584 VEDILEYRMLEKLRSTYLEPL--PKLVGEDSRLHTHFNQLATATGRLSSSQPNLQNIPIR 641
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
K ++R FIA PG L ADY Q+ELR+LAH + +++DAF+ D H+RTA
Sbjct: 642 GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTA 697
>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
Length = 910
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
L E S+ L S + LPL ++ GRVH S + T TGRLS+ PNLQN P
Sbjct: 608 LLEHRSLSKLKSTYTDKLPLM---IAPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRT 664
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA---MN 908
++ +IRQAF+A G ++ ADY Q+ELRI+AHL+ +L AF G D H TA MN
Sbjct: 665 EEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMN 724
Query: 909 MYP 911
+ P
Sbjct: 725 ITP 727
>gi|381172148|ref|ZP_09881282.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380687415|emb|CCG37769.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|390990081|ref|ZP_10260372.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372555183|emb|CCF67347.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|343518081|ref|ZP_08755077.1| DNA-directed DNA polymerase [Haemophilus pittmaniae HK 85]
gi|343394932|gb|EGV07479.1| DNA-directed DNA polymerase [Haemophilus pittmaniae HK 85]
Length = 696
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 373 KGAPSTNEEVL---EELAFSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 426
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ ADY Q+ELRI+AHL
Sbjct: 427 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 486
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 487 SQDQGLINAFTQGKDIHRSTAAEIF 511
>gi|336413076|ref|ZP_08593429.1| hypothetical protein HMPREF1017_00537 [Bacteroides ovatus
3_8_47FAA]
gi|335943122|gb|EGN04964.1| hypothetical protein HMPREF1017_00537 [Bacteroides ovatus
3_8_47FAA]
Length = 960
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 639 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 697
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 698 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 757
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 758 AFLSNHDIHAATAAKVY 774
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 433 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 475
>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum So ce56]
gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum So ce56]
Length = 537
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GR+H TGRLS++ PNLQN P + IR+AF+A PG+ ++ ADY
Sbjct: 363 VNPGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYS 422
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAHL+ ++DAF+AG D H RTAM ++
Sbjct: 423 QIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIF 457
>gi|395446448|ref|YP_006386701.1| DNA polymerase I [Pseudomonas putida ND6]
gi|388560445|gb|AFK69586.1| DNA polymerase I [Pseudomonas putida ND6]
Length = 932
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 631 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 689
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 690 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 749
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 750 LEDVTTDQ 757
>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
gi|423290815|ref|ZP_17269664.1| DNA polymerase I [Bacteroides ovatus CL02T12C04]
gi|156111108|gb|EDO12853.1| DNA-directed DNA polymerase [Bacteroides ovatus ATCC 8483]
gi|392664680|gb|EIY58217.1| DNA polymerase I [Bacteroides ovatus CL02T12C04]
Length = 949
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKVY 763
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|418517767|ref|ZP_13083925.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705480|gb|EKQ63952.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
Length = 915
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|399543583|ref|YP_006556891.1| DNA polymerase I [Marinobacter sp. BSs20148]
gi|399158915|gb|AFP29478.1| DNA polymerase I [Marinobacter sp. BSs20148]
Length = 936
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+ + GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 655 IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYS 714
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 715 QIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVF 749
>gi|399052867|ref|ZP_10742074.1| DNA polymerase I [Brevibacillus sp. CF112]
gi|433545911|ref|ZP_20502252.1| DNA polymerase I [Brevibacillus agri BAB-2500]
gi|398049239|gb|EJL41670.1| DNA polymerase I [Brevibacillus sp. CF112]
gi|432182800|gb|ELK40360.1| DNA polymerase I [Brevibacillus agri BAB-2500]
Length = 883
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
I A+ + L S +I L + K +VH N T TGRLS+ PNLQN P
Sbjct: 578 IDAILNFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTEPNLQNIPIR 636
Query: 851 EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
++ KIR+AFI + G ++ ADY Q+ELRILAH++ ++++DAF+ G D H+RTAM++
Sbjct: 637 MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISGDENLIDAFRKGMDIHTRTAMDV 696
Query: 910 Y 910
+
Sbjct: 697 F 697
>gi|378828278|ref|YP_005191010.1| DNA polymerase I [Sinorhizobium fredii HH103]
gi|365181330|emb|CCE98185.1| K02335 DNA polymerase I [Sinorhizobium fredii HH103]
Length = 1029
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH + T TGRLS+ PNLQN P + KIR AFIA PG+ L+ ADY Q+ELR+
Sbjct: 751 RVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFIATPGHKLVSADYSQIELRV 810
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 811 LAHVADIPQLRQAFADGVDIHAMTASEMF 839
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 97/251 (38%), Gaps = 61/251 (24%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
R+ L+ EDPS+ KV N +D V++ +G+ + F DTM M+ + D+ T G
Sbjct: 497 REALSRLKVLLEDPSVLKVAQNLKYDYLVMKRHGITLQSFD-DTMLMSYVVDAGNGTHGM 555
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
SL E ++G I KD+ G GK S
Sbjct: 556 DSLS--------------------------ERWLGHTPIPYKDVAG---------TGKAS 580
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
++ R +Y+A D+ TL+L+ LK +L K + Y+
Sbjct: 581 VSFDFVDIDRA-----TAYAAEDADVTLRLWHVLKPRL------------AAKGLTRVYE 623
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
+P +L ME G+ VDR+ LS + A + + A + +G
Sbjct: 624 RLEKPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLA------GETFTIG 677
Query: 660 SDTQLRQLLFG 670
S QL +LFG
Sbjct: 678 SPKQLGDILFG 688
>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 917
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 592 KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 645
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 646 SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 705
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
+ K +L AF G D H TA ++ AV
Sbjct: 706 SGDKGLLTAFAEGKDIHKATAAEVFGVALEAV 737
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
+ A DTE +D + V + F+I G A FG+ V L + +L
Sbjct: 339 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 391
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P EDP+ KV N +D +VL N+G+++ G DTM + + +S T + +++
Sbjct: 392 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 448
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
L R+ ++ + ++++ KG + +++ I
Sbjct: 449 LA--RRYLNAETISFEEIAGKG------VKQLTFNQI----------------------- 477
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
E E Y+A D+ TL+L+++L W KL +P + + E P
Sbjct: 478 ----ELEQAAPYAAEDADITLRLHQAL--------WGKLSAEP----GLAKVFSEIELPL 521
Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
+L +ME G ++ + L + + E E + K A H + N+ S QL
Sbjct: 522 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 575
Query: 666 QLLF 669
++LF
Sbjct: 576 EILF 579
>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
Length = 937
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 656 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K++L+AF+ G D H+ TA + + V T Q
Sbjct: 716 QIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQ 761
>gi|375264129|ref|YP_005021572.1| DNA polymerase I [Vibrio sp. EJY3]
gi|369839453|gb|AEX20597.1| DNA polymerase I [Vibrio sp. EJY3]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|389856247|ref|YP_006358490.1| DNA polymerase I [Streptococcus suis ST1]
gi|353739965|gb|AER20972.1| DNA polymerase I [Streptococcus suis ST1]
Length = 878
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+S + E I L S +++ LQ + + ++G++H + T+TGRLS+ PNLQN P
Sbjct: 572 VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629
Query: 850 -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
LE+ R IR+AF+ NS+++A DY Q+ELR+LAH++ K +++AF+ G D H+ TAM
Sbjct: 630 RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688
Query: 908 NMY 910
++
Sbjct: 689 RVF 691
>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
Length = 906
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
Q+ E + + E S+ L S + LP Q + VSG RVH S + TGRLS+
Sbjct: 593 QDLAETFELPRLILEYRSLSKLKSTYTDKLPHQVNPVSG---RVHTSYHQAVAATGRLSS 649
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++ +IRQAF+A PG+ L+ ADY Q+ELRI+AHL+ ++L AF
Sbjct: 650 SDPNLQNIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDA 709
Query: 900 DFHSRTAMNMY 910
D H TA ++
Sbjct: 710 DVHRATAAEVF 720
>gi|407715462|ref|YP_006836742.1| DNA polymerase I [Cycloclasticus sp. P1]
gi|407255798|gb|AFT66239.1| DNA polymerase I [Cycloclasticus sp. P1]
Length = 905
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E S+ L S + LP Q + V+G RVH S + TGRLS+ PNLQN P
Sbjct: 604 ILEHRSLSKLRSTYTDKLPKQINPVTG---RVHTSYHQAVAATGRLSSSDPNLQNIPVRS 660
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
++ +IRQAFIA G +++ ADY Q+ELRI+AHL+ +L AFK G D H TA ++
Sbjct: 661 EEGRRIRQAFIAEEGFTVMAADYSQIELRIMAHLSQDTGLLQAFKEGLDVHKATAAEVFG 720
Query: 912 HIRNAVETGQ 921
+ VET Q
Sbjct: 721 VPVDQVETHQ 730
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 75/297 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P E S +KV N +D +VL N+G+ ++G DTM + + +S T ++
Sbjct: 378 VLDQLKPLLESESARKVGQNLKYDANVLANHGISLAGICHDTMLQSYVLNS---TASRHN 434
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++AL K + ++ Y+ KG F ++S+
Sbjct: 435 MDALA--EKYLGQETIHYEDVAGKGAKQICF-DQVSI----------------------- 468
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
EL Y+A D+ TL+L++ + +L ++ S+ Y+
Sbjct: 469 ---------ELAAPYAAEDADITLRLHQHIFPQLKQID-----------SLATVYETIEM 508
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+LVD + LS+ E A++ A H + N+GS Q
Sbjct: 509 PLVPVLARMEQTGVLVDEQMLSQ----QSGELTASIKALETQA--HEAAGQPFNLGSPKQ 562
Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP 720
++++L+ D LP+ + K P K PS ++ L+ + VD P
Sbjct: 563 IQEILY--------DKLGLPVLK--KTP---------KGQPSTAESV-LQDLAVDFP 599
>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVASTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
Length = 875
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH L +T TGRLS++ PNLQN P + +IRQAFIA G
Sbjct: 593 LPKQIDNITH---RVHTKFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRQAFIAKEGYK 649
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 650 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF 691
>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
Length = 886
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNL 844
R+A ++A+ +D L+S F L+ G +GR+H + N TGR+S+ RPNL
Sbjct: 576 RDAHPIVAAILRFRELDKLLSTFYEGLRSE--IGADGRIHATFNQAVARTGRISSERPNL 633
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P + + R AF+A G+ L+ ADY Q+ELR+LAHL+ + ++ GD H+
Sbjct: 634 QNIPVRTDEGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTL 693
Query: 905 TAMNMY 910
A ++
Sbjct: 694 VAARVF 699
>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
Length = 888
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S N T TGRLS+ PNLQN P + +IR+AFIA PG ++ AD
Sbjct: 606 AKLTDRQGRVHTSYNQAVTATGRLSSSDPNLQNIPIRTDEGRRIREAFIAPPGCVILAAD 665
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAHL+ DAF D H+RTA ++
Sbjct: 666 YSQIELRVLAHLSQDPVFCDAFSQDEDIHTRTASEVF 702
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 50/204 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L P F +P+I+KV N FD +L GL+V G DTM + L + SR GG+
Sbjct: 362 VLERLRPAFGNPAIRKVGQNLKFDLQILAVAGLEVQGSWCDTMLCSYLLNPSR---GGHG 418
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
L+AL + ++ +Y + G +I ++
Sbjct: 419 LDALAQEH--LNHKMISYDEVTGSGKN------RICFSEV-------------------- 450
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
E+++ R Y+A D+ T L++ L L E + K +F E
Sbjct: 451 --EVEKATR-----YAAEDADATWLLHEKLLPMLKEQGLE--------KLLF----ELEM 491
Query: 604 PFGEILVKMETEGMLVDREYLSEI 627
P EI+ +ME G+L+D YL+E+
Sbjct: 492 PLMEIMTRMEQHGVLLDLAYLAEL 515
>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
Length = 912
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 787 EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQ 845
+A I+ + + ++ L S +I PL + R++ S L T TGRLS++ PNLQ
Sbjct: 608 DAHPVIALILDYREVNKLKSTYIEPLLRFGSANDKHRIYTSFLQSGTATGRLSSKSPNLQ 667
Query: 846 NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
N P ++ KIRQAFI+ G+SLI DY Q+ELR+LAH S++++FK D H T
Sbjct: 668 NIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHFET 727
Query: 906 AMNMY 910
A ++
Sbjct: 728 AARLF 732
>gi|423301030|ref|ZP_17279054.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
gi|408472365|gb|EKJ90893.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 609 YGTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 667
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 668 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 727
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 728 AFLSNHDIHAATAAKIY 744
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ S KV N +D VL+NYG++V G DTM
Sbjct: 403 IVNEFRPVFENESSLKVGQNIKYDMIVLQNYGVEVKGPLFDTM 445
>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
Length = 927
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + TGRLS+ PNLQN P D +IR+AF+A PG L+ DY
Sbjct: 647 VNPETGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ +L AF +G D H TA ++
Sbjct: 707 QIELRIMAHLSQDPGLLGAFASGADIHRATAAEVF 741
>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 934
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
++GRVH S + TGRLS+ PNLQN P +D +IR+AF+A PG LI DY Q+E
Sbjct: 657 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LRI+AHL+ ++ AF++G D H TA ++
Sbjct: 717 LRIMAHLSGDPGLVGAFESGADVHRATAAEVF 748
>gi|407069591|ref|ZP_11100429.1| DNA polymerase I [Vibrio cyclitrophicus ZF14]
Length = 937
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 656 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 715
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ K++L+AF+ G D H+ TA + + V T Q
Sbjct: 716 QIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQ 761
>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
Length = 915
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IRQAFIA PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVF 729
>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
Length = 877
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
V+ + G+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + PG ++ ADY
Sbjct: 596 VNYETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADY 655
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+AN + +++AF D H++TAM ++
Sbjct: 656 SQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVF 691
>gi|153838822|ref|ZP_01991489.1| DNA polymerase I, partial [Vibrio parahaemolyticus AQ3810]
gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
Length = 677
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 396 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYS 455
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 456 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 486
>gi|423293907|ref|ZP_17272034.1| DNA polymerase I [Bacteroides ovatus CL03T12C18]
gi|392677128|gb|EIY70547.1| DNA polymerase I [Bacteroides ovatus CL03T12C18]
Length = 949
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKVY 763
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
++NEF P FE+ + KV N +D VL+NYG V G DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464
>gi|365847528|ref|ZP_09388015.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
gi|364572307|gb|EHM49862.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
Length = 928
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L+AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLNAFAEGKDIHRATAAEVF 742
>gi|376295933|ref|YP_005167163.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
Length = 888
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
G ++ N++ ++ R+ + A+ E ++ L S ++ PL + G++GR+H N
Sbjct: 566 GLRSTANQVL---EKIRDQHPIVDAVLEFRMLEKLRSTYLEPL--PKMVGEDGRLHTHFN 620
Query: 830 -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
++T TGRLS+ +PNLQN P ++R F A GN L ADY Q+ELR+LAH +
Sbjct: 621 QLSTATGRLSSSQPNLQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKD 680
Query: 889 KSMLDAFKAGGDFHSRTA 906
++DAF+ D H+RTA
Sbjct: 681 PELIDAFRHDEDIHARTA 698
>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
Length = 932
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 651 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 711 QIELRIMAHLSGDKALLEAFQQGKDIHAATA 741
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 305 QKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNK 364
+ + K+ AA +G + ++ N+ + I RSK Y ++ + +A W+ K
Sbjct: 300 EADEKSGAARSSGTSATSTVEMNTSAVTIDRSK----YETILDEETFNA-----WLEKLK 350
Query: 365 YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD- 423
V A DTE +D V + F+ G A ++D RD
Sbjct: 351 AAE-VFAFDTETDSLDYMVANLVG----LSFATEEGVAAYVPVAHD--YLDAPQQLDRDW 403
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
+L + P ED + KV N +D VL YG+++ G DTM + +++S
Sbjct: 404 VLEQLKPILEDDAQAKVGQNLKYDMSVLARYGIEMKGIKHDTMLASYVFNS 454
>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
gi|6015002|sp|O08307.1|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
Length = 942
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S N + TGRLS+ PNLQN P ++ +IR+AF+A PG + ADY
Sbjct: 657 VNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELR+LAH++ ++++ AF+ G D H+ TA ++ AV+ Q
Sbjct: 717 QIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQ 762
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 56/248 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
+++ APFF +P K HN FD VL G+KVSG DTM A
Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLAGAGIKVSGLAFDTMIAA------------- 452
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
A+ G R+ + +D Y+ + + T +++D+ GR K S ++
Sbjct: 453 ---AMLGKRQGL-KDLAFYELKLPEPPT--------TIEDLIGRG--NKQISFAEV---- 494
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
PVE+ Y+A D++ TL+L + L++ +L+ +P ++ D Y
Sbjct: 495 PVEQ--------AAPYAAADALYTLRLTERLQR-------QLEAEP----ALHDLYYRVE 535
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P E+L ME G+ +D+EYL E+ + V R + A N+ S
Sbjct: 536 LPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP------FNINSGQ 589
Query: 663 QLRQLLFG 670
QL +LFG
Sbjct: 590 QLNDVLFG 597
>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
Length = 878
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+S + E I L S +++ LQ + + ++G++H + T+TGRLS+ PNLQN P
Sbjct: 572 VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629
Query: 850 -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
LE+ R IR+AF+ NS+++A DY Q+ELR+LAH++ K +++AF+ G D H+ TAM
Sbjct: 630 RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688
Query: 908 NMY 910
++
Sbjct: 689 RVF 691
>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
Length = 914
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ +GR+H S N T TGRLS+ PNLQN P ++ +IR AFIA PG+ + ADY
Sbjct: 634 INPADGRIHTSFNQTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYS 693
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q++LR+LAH + +L+AF+ D H RTA ++
Sbjct: 694 QIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIF 728
>gi|451972454|ref|ZP_21925662.1| DNA polymerase I [Vibrio alginolyticus E0666]
gi|451931664|gb|EMD79350.1| DNA polymerase I [Vibrio alginolyticus E0666]
Length = 928
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G+ ++ DY
Sbjct: 647 INPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPAGHKILAVDYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 707 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 737
>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
gi|423220600|ref|ZP_17207095.1| DNA polymerase I [Bacteroides caccae CL03T12C61]
gi|149130302|gb|EDM21512.1| DNA-directed DNA polymerase [Bacteroides caccae ATCC 43185]
gi|392623677|gb|EIY17780.1| DNA polymerase I [Bacteroides caccae CL03T12C61]
Length = 949
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
+ T +E E+ + + E + L+ +I L ++ + GRVH S N T
Sbjct: 628 YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
TGRLS+ PNLQN P +++ +IR+AFI G ADY Q+ELRI+AHL+ K+M+D
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746
Query: 894 AFKAGGDFHSRTAMNMY 910
AF + D H+ TA +Y
Sbjct: 747 AFLSNHDIHAATAAKIY 763
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 56/246 (22%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++NEF P FE+ + KV N +D VL+NYG++V G DTM + R Y
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGVQVKGPLFDTMIAHYVLQPELRHGMDY- 480
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++E YQ I + ++ G K + + +AP
Sbjct: 481 ----------LAEIYLRYQ--------------TIHIDELIG----PKGKNQKNMRDLAP 512
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
++++ Y+ D+ TLKL L+K+L E + + +
Sbjct: 513 --------KDVY-RYACEDADVTLKLKNVLEKELKENDAE------------RLFYDIEM 551
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +LV +E G+L+D E L + A+ E + A + N+ S Q
Sbjct: 552 PLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIYELA------GETFNIASPKQ 605
Query: 664 LRQLLF 669
+ ++LF
Sbjct: 606 VGEVLF 611
>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
Length = 929
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 648 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYS 707
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 708 QIELRIMAHLSGDQALLDAFQQGKDIHAATA 738
>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
Length = 923
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
Q+ R I + + L+ +I L ++ + G +H S N T TGRLS+
Sbjct: 610 QQLRSKSPIIDEILNYRGLKKLLGTYIDALPKL-INSRTGHIHASFNQAITATGRLSSSD 668
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
PNLQN P + D +IR+ FI PG ADY Q+ELRI+AHL+ +M++AF+ G D
Sbjct: 669 PNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAFREGSDI 728
Query: 902 HSRTAMNMY 910
H+ TA ++
Sbjct: 729 HAATAAKIW 737
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 93/249 (37%), Gaps = 60/249 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
++N F P +E+P I KV N +D VL NYG+++ G DTM L Y
Sbjct: 396 IVNIFKPLYENPEILKVGQNIKYDYEVLINYGIEIQGKMFDTMLAHYLIQPELYHNMDYL 455
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
E + + E+ KG + SM+D +AP
Sbjct: 456 AEVFLNYQTIHIEELIG-----PKGKNQK------SMRD------------------LAP 486
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ + Y+A D+ TL+L L+ KL E+ + D +
Sbjct: 487 SDIYE---------YAAEDADITLRLKNVLESKLKEIDCE------------DLFWNVEM 525
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P +L ME G+ +D + L E E NR + H + + N+ S
Sbjct: 526 PLVPVLAHMEMTGVCIDTDTLKET-------SENLTNRLNE-IEHHIYELAGESFNIASP 577
Query: 662 TQLRQLLFG 670
Q+ ++LFG
Sbjct: 578 RQVGEILFG 586
>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHTATA 739
>gi|423126574|ref|ZP_17114253.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
gi|376396830|gb|EHT09467.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
Length = 929
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +S K GRVH S + T TGRLS+ PNLQN P + +IRQAFIA P +
Sbjct: 645 LPLM---ISPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIA-PEDY 700
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 743
>gi|386580284|ref|YP_006076689.1| DNA polymerase I [Streptococcus suis JS14]
gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
Length = 878
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+S + E I L S +++ LQ + + ++G++H + T+TGRLS+ PNLQN P
Sbjct: 572 VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629
Query: 850 -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
LE+ R IR+AF+ NS+++A DY Q+ELR+LAH++ K +++AF+ G D H+ TAM
Sbjct: 630 RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688
Query: 908 NMY 910
++
Sbjct: 689 RVF 691
>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
Length = 882
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
I A+ + L S +I L + K +VH N T TGRLS+ PNLQN P
Sbjct: 577 IDAILTFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPIR 635
Query: 851 EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
++ KIR+AFI + G ++ ADY Q+ELRILAH++ ++++DAF+ G D H+RTAM++
Sbjct: 636 MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDV 695
Query: 910 Y 910
+
Sbjct: 696 F 696
>gi|344343099|ref|ZP_08773969.1| DNA polymerase I [Marichromatium purpuratum 984]
gi|343805651|gb|EGV23547.1| DNA polymerase I [Marichromatium purpuratum 984]
Length = 903
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA +++ + EQ A E + + E + L S + LP V+ +GR+H
Sbjct: 578 KGAPSTSESVL--EQLAAEGHELPRLILEHRGLAKLRSTYTDKLP---QLVNPDSGRLHT 632
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P ++ +IR+AF+A PGN LI ADY Q+ELRI+AHL
Sbjct: 633 SYHQAVAATGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEPGNLLIAADYSQIELRIMAHL 692
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
+ + +L AF +G D H TA + AV+ Q
Sbjct: 693 SGDERLLAAFASGQDIHRATAAEILGIAPEAVDAEQ 728
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 131/345 (37%), Gaps = 83/345 (24%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLLDGGGRD-LLNEF 428
A DTE +D + V + F+I G A +C + LD RD +L+
Sbjct: 327 AFDTETTALDYMRAEIVG----VSFAIEPGAAAYVPLAHTCPGTPEQLD---RDWVLDTL 379
Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
P EDP KV N +D VL +G+ + G DTM + + DS T G + +++L
Sbjct: 380 KPLLEDPERAKVGQNLKYDMSVLARHGITLRGIAHDTMLESYVLDS---TAGRHDMDSLA 436
Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
R+ + D A+ E GK + F + L + G
Sbjct: 437 --RRYLDCDTIAF----------EDIAGKGVKQLTFDQIPLDQAG--------------- 469
Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
Y+A D+ TL+L++ L +L + + Y++ P I
Sbjct: 470 --------PYAAEDAEVTLRLHRHLWPRLESEA-----------GLAALYRDLEIPLVPI 510
Query: 609 LVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLL 668
L +ME G+ +D +++A + AV H + N+GS Q+ +L
Sbjct: 511 LSRMERHGVRID------CDQLATHSHDLAVRIQALETQAHEVAGRPFNMGSPKQIGAIL 564
Query: 669 FGGKPNSKDDSESLPIERIFKVPN---------TEGVIAEGKKTP 704
F D + LP+ + K P E + AEG + P
Sbjct: 565 F--------DEQGLPV--VAKTPKGAPSTSESVLEQLAAEGHELP 599
>gi|417951299|ref|ZP_12594406.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
gi|342805251|gb|EGU40529.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
Length = 932
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 651 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 711 QIELRIMAHLSGDKALLEAFQQGKDIHAATA 741
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 305 QKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNK 364
+ + K+ A +G + ++ N+ + I RSK Y ++ D +A W+ K
Sbjct: 300 EADEKSGAVRSSGTSATSTVEMNTSAVTIDRSK----YETILDEDTFNA-----WLEKLK 350
Query: 365 YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD- 423
V A DTE +D V + F+ G A ++D RD
Sbjct: 351 AAE-VFAFDTETDSLDYMVANLVG----LSFATEEGVAAYVPVAHD--YLDAPQQLDRDW 403
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
+L + P ED + KV N +D VL YG+++ G DTM + +++S
Sbjct: 404 VLEQLKPILEDDAQAKVGQNLKYDMSVLARYGIEMKGIKHDTMLASYVFNS 454
>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
Length = 968
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 9/107 (8%)
Query: 805 ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
+ ++ILP K GRVH + ++ T TGRLS+ PNLQN P + KIR AF+A
Sbjct: 680 LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVA 731
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ L+ ADY Q+ELRILAH+AN ++ +AF G D H+ TA ++
Sbjct: 732 PKRHVLLSADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIF 778
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 128/315 (40%), Gaps = 84/315 (26%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE------ADFGNGKSCIWVDLLDGG---- 420
A DTE +D P+ +++ FS+ PE + G++ DLL GG
Sbjct: 382 AFDTETTSLD-----PI-QAKLVGFSLALQPEKAAYVPLEHVEGEN----DLLKGGRIVS 431
Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
+ L P ED ++ K+ N +D V++ YG+ + F DTM ++
Sbjct: 432 QIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIHCFD-DTMLLS-------- 482
Query: 478 TEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
Y+LEA LT + +SE ++ I+ KD+ K
Sbjct: 483 ----YALEAGTLTHNMNALSERWLGHKP--------------IAYKDLTHNGK------- 517
Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
KI++ A V+ Q Y+A D+ TL+L++ LK +L+ + M
Sbjct: 518 -KITSFAEVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQGMT 558
Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
Y+ +P E+L +ME G+LVDR+ L R E A F + +
Sbjct: 559 RIYERLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLSGEK 612
Query: 656 MNVGSDTQLRQLLFG 670
N+ S QL +LFG
Sbjct: 613 FNLASPKQLGDILFG 627
>gi|339485029|ref|YP_004699557.1| DNA polymerase I [Pseudomonas putida S16]
gi|338835872|gb|AEJ10677.1| DNA polymerase I [Pseudomonas putida S16]
Length = 907
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 606 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 664
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAF+A PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 665 GRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDVHRATAAEVFGVA 724
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 725 LEDVTTDQ 732
>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
Length = 966
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + T TGRLS+ PNLQN P ++ KIR+AFIA G LI AD
Sbjct: 680 AAIAERTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFIAPQGKVLISAD 739
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+ + + AF+ G D H+ TA M+
Sbjct: 740 YSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTASEMF 776
>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
gi|386583689|ref|YP_006080092.1| DNA polymerase I [Streptococcus suis D9]
gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
gi|353735835|gb|AER16844.1| DNA polymerase I [Streptococcus suis D9]
Length = 878
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+S + E I L S +++ LQ + + ++G++H + T+TGRLS+ PNLQN P
Sbjct: 572 VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629
Query: 850 -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
LE+ R IR+AF+ NS+++A DY Q+ELR+LAH++ K +++AF+ G D H+ TAM
Sbjct: 630 RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688
Query: 908 NMY 910
++
Sbjct: 689 RVF 691
>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
Length = 914
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q ++ K GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G
Sbjct: 630 LPQQ---INPKTGRVHTSYHQAVTTTGRLSSTNPNLQNIPIRSAEGRRIRQAFIAPKGYC 686
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
L+ ADY Q+ELRI+AHL+ + +L A AG D H A ++ + V T Q
Sbjct: 687 LLAADYSQIELRIMAHLSEDEKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQ 739
>gi|424048318|ref|ZP_17785872.1| DNA polymerase I [Vibrio cholerae HENC-03]
gi|408882953|gb|EKM21748.1| DNA polymerase I [Vibrio cholerae HENC-03]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
Length = 929
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA ++ ADY Q+EL
Sbjct: 652 TGRVHTSYHQAVTATGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIEL 711
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ K +LDAF G D H TA ++
Sbjct: 712 RIMAHLSQDKGLLDAFAQGEDIHRATASEVF 742
>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
Length = 932
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LP ++ + GR+H S N
Sbjct: 611 YVTSEEVLESLRGKHEVVGKILEHRGLKKLLGTYIDALP---QLINPETGRIHTSFNQTV 667
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+ M
Sbjct: 668 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHM 727
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AF+ G D H+ TA +Y
Sbjct: 728 IEAFQKGQDIHAATASKIY 746
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 67/295 (22%)
Query: 335 RSKLASFYS---NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGE 391
++ LA+ ++ N +VDN +K+ +L N V + DTE D P+ E
Sbjct: 327 KTNLATLHTLNCNYQLVDN---EEKLSQLLQNIVTQSVLSLDTETTSTD-----PI-RAE 377
Query: 392 VICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
++ S +S E N + V + +++ F P FE+ I KV N +D VL
Sbjct: 378 LVGMS-FSYAE----NQAFYVPVPADRSEAQKIVDRFRPVFENREIMKVGQNIKYDMLVL 432
Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
NYG+++ G DTM + R Y ++E YQ
Sbjct: 433 ANYGVQLQGPLFDTMVAHYVLQPELRHNMDY-----------LAEIYLNYQ--------- 472
Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
I ++++ G K + G + + P + Y+ D+ TLKL
Sbjct: 473 -----TIHIEELIG----PKGKNQGNMRDLPPASVYE---------YACEDADVTLKLKN 514
Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE 626
L+K+L E + + ++E P +L ME G+ +D E L E
Sbjct: 515 KLEKELDENNVR------------KLFEEIEMPLIPVLAYMERNGVRIDTEALKE 557
>gi|410634866|ref|ZP_11345493.1| DNA polymerase I [Glaciecola lipolytica E3]
gi|410145610|dbj|GAC12698.1| DNA polymerase I [Glaciecola lipolytica E3]
Length = 926
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + TGRLS+ PNLQN P ++ K+R+AF+A G ++ ADY
Sbjct: 645 INPRTGRVHTSYHQAIAATGRLSSTDPNLQNIPIRNEEGRKVRKAFVARKGYKIVAADYS 704
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +LDAF +G D H TA ++
Sbjct: 705 QIELRIMAHLSEDKGLLDAFSSGKDVHKATAAEVF 739
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 55/246 (22%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+LN+F E S KKV + +D +VL NYG+ + G DTM
Sbjct: 398 VLNKFKTLLESESHKKVGQHLKYDKNVLANYGITLRGIAFDTM----------------- 440
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
LE+ + V D + K + NT IS ++I G+ G+ P
Sbjct: 441 LESYVLNSVVTRHDMDSLSKYYLEHNT-------ISFEEIAGK------GAKQLTFNQIP 487
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+E+ Y+A D+ TL+L++ L +L E +S+ D QE
Sbjct: 488 LEKAS--------PYAAEDADITLRLHQKLWPQLCE-----------HESLKDVLQEIEV 528
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L KME G+L+D + L + Q+ A + H + N+GS Q
Sbjct: 529 PLASVLSKMEQRGVLIDSQTL------LQQSQDLASRIMQLEKEVHDLAGEEFNLGSTKQ 582
Query: 664 LRQLLF 669
L+++LF
Sbjct: 583 LQEILF 588
>gi|423199084|ref|ZP_17185667.1| DNA polymerase I [Aeromonas hydrophila SSU]
gi|404629621|gb|EKB26366.1| DNA polymerase I [Aeromonas hydrophila SSU]
Length = 918
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 593 KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 647 SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 706
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
+ K +L AF G D H TA ++ +AV
Sbjct: 707 SGDKGLLTAFAEGKDIHKATAAEVFGVALDAV 738
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
+ A DTE +D + V + F+I G A FG+ V L + +L
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 392
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P EDP+ KV N +D +VL N+G+++ G DTM + + +S
Sbjct: 393 KLKPLLEDPTRLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 440
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
T R M + Y + IS +DI G+ + + ++ AP
Sbjct: 441 -TASRHDMDSLARRYLN-----------VETISFEDIAGKGVKQLTFNQIELEQAAP--- 485
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
Y+A D+ TL+L+++L W GK + + E P
Sbjct: 486 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLARVFSEIELPLL 523
Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
+L +ME G ++ + L + + E E + K A K + N+ S QL +
Sbjct: 524 PVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQAHKLA--GQEFNLSSPKQLGE 577
Query: 667 LLF 669
+LF
Sbjct: 578 ILF 580
>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas protegens Pf-5]
gi|68347893|gb|AAY95499.1| DNA-directed DNA polymerase [Pseudomonas protegens Pf-5]
Length = 929
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 648 QINPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADY 707
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L+AF+ D H+ TA ++
Sbjct: 708 SQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVF 743
>gi|355154318|ref|YP_002786223.2| DNA polymerase I [Deinococcus deserti VCD115]
gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
[Deinococcus deserti VCD115]
Length = 923
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 779 FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRL 837
A + R+ I + E +D L ++ PL S V+ + GR+H + TGRL
Sbjct: 608 VAALEPLRDEHPVIPLVLEFRELDKLRGTYLDPLP-SLVNPRTGRLHTTFAQTAVATGRL 666
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
S+ PNLQN P + +IR+ FIA G LI ADY Q+ELR+LAH+A+ M AF+
Sbjct: 667 SSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFRE 726
Query: 898 GGDFHSRTAMNM 909
G D H RTA +
Sbjct: 727 GADIHRRTAAQV 738
>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
Length = 931
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 740
>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
Length = 928
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHV 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas tunicata D2]
gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas tunicata D2]
Length = 916
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL V+ RVH S + T TGRLS+ PNLQN P ++ KIRQAF+A G
Sbjct: 631 LPLM---VNADTQRVHTSYHQAITATGRLSSTDPNLQNIPIRTEEGRKIRQAFVAAKGYK 687
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ ADY Q+ELRI+AHL+ K +L+AF G D HS TA ++
Sbjct: 688 IAAADYSQIELRIMAHLSQDKGLLNAFAQGLDVHSATAAEVF 729
>gi|424034473|ref|ZP_17773878.1| DNA polymerase I [Vibrio cholerae HENC-01]
gi|408873076|gb|EKM12283.1| DNA polymerase I [Vibrio cholerae HENC-01]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|389680586|ref|ZP_10171936.1| DNA-directed DNA polymerase [Pseudomonas chlororaphis O6]
gi|388555691|gb|EIM18934.1| DNA-directed DNA polymerase [Pseudomonas chlororaphis O6]
Length = 932
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 651 QINPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADY 710
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L+AF+ D H+ TA ++
Sbjct: 711 SQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVF 746
>gi|333996092|ref|YP_004528705.1| DNA-directed DNA polymerase [Treponema azotonutricium ZAS-9]
gi|333734679|gb|AEF80628.1| DNA-directed DNA polymerase [Treponema azotonutricium ZAS-9]
Length = 952
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 800 SIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIR 858
++ L S ++ L ++++ + GR+H + + T TGRLS+R PNLQN P E++ +IR
Sbjct: 657 TLSKLKSTYVDAL--ADLADREGRLHTNFVQTGTATGRLSSREPNLQNIPIREEEGRRIR 714
Query: 859 QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AFIA PG L+ ADY Q+EL +LAHL+ K++L+AF G D H+RTA ++
Sbjct: 715 EAFIAKPGCVLVSADYSQIELVVLAHLSGDKNLLEAFTEGKDVHARTAALIF 766
>gi|424035698|ref|ZP_17774881.1| DNA polymerase I [Vibrio cholerae HENC-02]
gi|408897485|gb|EKM33248.1| DNA polymerase I [Vibrio cholerae HENC-02]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
Length = 931
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 740
>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
Length = 933
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 652 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 711
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 712 QIELRIMAHLSGDKALLEAFQQGKDIHAATA 742
>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
Length = 930
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
Length = 933
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 652 INAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYS 711
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 712 QIELRIMAHLSGDKALLEAFQQGKDIHAATA 742
>gi|386824733|ref|ZP_10111863.1| DNA polymerase I [Serratia plymuthica PRI-2C]
gi|386378410|gb|EIJ19217.1| DNA polymerase I [Serratia plymuthica PRI-2C]
Length = 933
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+EL
Sbjct: 656 SGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIEL 715
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ + +L AF AG D H TA ++
Sbjct: 716 RIMAHLSQDEGLLKAFAAGKDIHRATAAEVF 746
>gi|345428767|ref|YP_004821883.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus parainfluenzae T3T1]
gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus parainfluenzae T3T1]
Length = 932
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 609 KGAPSTNEEVL---EELAFSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 662
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ ADY Q+ELRI+AHL
Sbjct: 663 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIF 747
>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacteraceae bacterium HTCC2150]
Length = 931
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ + GRVH S +I TGRL++ PNLQN P ++ +IR+AF+A GN L+ DY
Sbjct: 649 HINAETGRVHTSYSIAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDY 708
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A ++ +AF G D H+ TA M+
Sbjct: 709 SQIELRILAHVAKIDALKEAFYNGVDIHALTASQMF 744
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 61/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P EDP++ K+ N +D + YG+KV+ F DTM
Sbjct: 405 VLDLLKPVLEDPAVLKIGQNMKYDAKIFARYGVKVAPFD-DTM----------------- 446
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
+MS + A + + S + E ++G IS+K + G K SA +
Sbjct: 447 ---------LMSYAQNAGKHNHSMDSLSERYLGHSPISIKTLLGTGK-----SAITFDKV 492
Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
PV + + Y+A D+ TL+L W+ G + + + Y+
Sbjct: 493 -PVAD--------AVKYAAEDADVTLRL------------WQFLGPLLHIEKVTKVYERM 531
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
+P +L +ME G+ VDR+ LS + A A++ A + A H + NVGS
Sbjct: 532 ERPLVPVLAEMEMHGIKVDRDTLSRMSN-AFAQKMAGLE-----AEIHEKAGQSFNVGSP 585
Query: 662 TQLRQLLF 669
QL ++LF
Sbjct: 586 KQLGEILF 593
>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
Length = 956
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ KIRQAF+A G ++ DY
Sbjct: 676 INQRTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGKKIVACDYS 735
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K + DAF+ G D H TA ++
Sbjct: 736 QIELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVW 770
>gi|411011289|ref|ZP_11387618.1| DNA polymerase I [Aeromonas aquariorum AAK1]
Length = 916
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++ ++ A E E + L E + L S + LPL + + GRVH
Sbjct: 591 KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + TGRLS+ PNLQN P + +IRQAFI G L+ ADY Q+ELRI+AHL
Sbjct: 645 SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCTGYKLVAADYSQIELRIMAHL 704
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ K +L AF G D H TA ++
Sbjct: 705 SGDKGLLTAFAEGKDIHKATAAEVF 729
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
+ A DTE +D + V + F+I G A FG+ V L + +L
Sbjct: 338 LFAFDTETTSLDYMEARIVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 390
Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
+ P EDP+ KV N +D +VL N+G+++ G DTM + + +S
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 438
Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
T R M + Y + IS +DI G+ + + ++ AP
Sbjct: 439 -TASRHDMDSLARRYLNAET-----------ISFEDIAGKGVKQLTFNQIELEQAAP--- 483
Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
Y+A D+ TL+L+++L W GK + + E P
Sbjct: 484 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLAKVFSEIELPLL 521
Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
+L +ME G ++ + L + + E E + K A H + N+ S QL +
Sbjct: 522 PVLARMERLGTTIEPQLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLGE 575
Query: 667 LLF 669
+LF
Sbjct: 576 ILF 578
>gi|417320976|ref|ZP_12107516.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
Length = 930
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
Length = 928
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G+ ++ DY
Sbjct: 647 INPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 707 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 737
>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
Length = 930
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|444424781|ref|ZP_21220233.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241904|gb|ELU53422.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 930
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 649 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 709 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 739
>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
Length = 894
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
+ GRVH S N T TGRLS+ PNLQN P ++ +IR AFIA G L+ ADY Q++
Sbjct: 617 RTGRVHTSFNQCGTATGRLSSSSPNLQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQID 676
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH + + ++ AF+ G D H RTA ++
Sbjct: 677 LRVLAHYSQDRELIAAFQGGQDIHRRTAAEIF 708
>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
Length = 885
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I+ + E + L S +I PL + GRVH S + T TGRLS++ PNLQN P
Sbjct: 585 SIAKILEYRELYKLRSTYIEPLLKLSKESPLGRVHTSFIQTGTSTGRLSSKDPNLQNIPV 644
Query: 850 LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
++R F+A G LI DY Q+ELR+LAH +N ++M+ AF+ G D H TA+ +
Sbjct: 645 KTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYETALKL 704
Query: 910 Y 910
+
Sbjct: 705 F 705
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 62/233 (26%)
Query: 438 KKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSE 496
K V N +D V+EN +GL++S +ADTM MA L + E L+ L
Sbjct: 383 KIVGQNLKYDLAVIENNFGLRLSSSYADTMLMAWLLNP----ESNVGLDTLA-------- 430
Query: 497 DKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWI 556
K+ + DM K F +S + F L K
Sbjct: 431 -KRFFNHDMVK------FKDVVSKNENFSHVPLDKA-----------------------C 460
Query: 557 SYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEG 616
Y++ D+ TLKLY L L +P + + +E PF L++ME EG
Sbjct: 461 EYASEDAWMTLKLYNKLHDML---------EP----RLLEIAKEVEFPFILTLMRMEKEG 507
Query: 617 MLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
+ +D Y + K + A++ + C DA++ N+ S QL +LF
Sbjct: 508 IKIDGAYFEALLK----RTDGAIDALKHEIFTLC-DAQF-NLNSTQQLGTVLF 554
>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417955025|ref|ZP_12598051.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342814073|gb|EGU49025.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 931
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ DY
Sbjct: 650 INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++L+AF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDKALLEAFQQGKDIHAATA 740
>gi|374367613|ref|ZP_09625674.1| DNA polymerase I [Cupriavidus basilensis OR16]
gi|373100916|gb|EHP41976.1| DNA polymerase I [Cupriavidus basilensis OR16]
Length = 937
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S T TGRL++ PNLQN P ++ +IR+AFIA PGN ++ ADY
Sbjct: 657 VNPATGRVHTSYGQTTAVTGRLASTEPNLQNIPVRTEEGRRIREAFIAGPGNVIVSADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AH++ ++++ +F G D H TA ++ +AV + Q
Sbjct: 717 QIELRIMAHISGDENLMRSFAEGEDVHRATAAEIFGVTPDAVSSEQ 762
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 74/256 (28%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L + EDPS KV N +D HV N+G+ + G DTM + + +S R G S
Sbjct: 411 VLARMRAWLEDPSRGKVGQNLKYDAHVFANHGVSLRGIVHDTMLQSYVL-ASHRNHGMDS 469
Query: 484 L-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
L E L G + + +Y++ KG + GF +I
Sbjct: 470 LAERLLGLKTI------SYEEVCGKGASQIGF---------------------DQIDIAR 502
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E Y+A D+ TL+L++++ ++ + + + Y++
Sbjct: 503 ATE------------YAAEDADVTLRLHRNMYPQVEAL-----------QGVHYVYEKIE 539
Query: 603 QPFGEILVKMETEGMLVDREYLS--------EIEKVARAEQEAAVNRFRKWASKHCPDAK 654
P +L K+E G+L+D E L + + +A EAA F
Sbjct: 540 MPVSVVLQKIERNGVLIDAERLGAQSTQLGQRMLTLEQAAYEAAGQPF------------ 587
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS Q+ ++LFG
Sbjct: 588 --NLGSPKQIGEILFG 601
>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
gi|198273174|gb|EDY97443.1| DNA-directed DNA polymerase [Bacteroides plebeius DSM 17135]
Length = 931
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
+ T +E E+ + + + E + L+ +I LP ++ GR+H S N
Sbjct: 610 YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALP---QLINPATGRIHTSFNQTV 666
Query: 832 TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
T TGRLS+ PNLQN P +D +IR+AFI G ADY Q+ELRI+AHL+N M
Sbjct: 667 TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHM 726
Query: 892 LDAFKAGGDFHSRTAMNMY 910
++AF+ D H+ TA +Y
Sbjct: 727 IEAFQKDQDIHAATAAKIY 745
>gi|452749422|ref|ZP_21949184.1| DNA polymerase I [Pseudomonas stutzeri NF13]
gi|452006648|gb|EMD98918.1| DNA polymerase I [Pseudomonas stutzeri NF13]
Length = 914
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAFIA PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 693 SQIELRIMAHLAQDTGLLHAFQNDLDVHRATAAEVF 728
>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
Length = 913
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +LDAF+ G D H TA ++
Sbjct: 692 SQIELRIMAHLAKDDGLLDAFRHGLDVHRATAAEVF 727
>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
Length = 928
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P + +IRQAF+A G+ ++ DY
Sbjct: 647 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYS 706
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 707 QIELRIMAHLSGDQALLDAFRDGKDIHAATA 737
>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Pseudomonas entomophila L48]
Length = 922
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 621 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPVRTAE 679
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+IRQAF+A PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 680 GRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVF 736
>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
33392]
gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
33392]
Length = 932
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 609 KGAPSTNEEVL---EELAFSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 662
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ ADY Q+ELRI+AHL
Sbjct: 663 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIF 747
>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
Length = 920
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN-TETGRLSA 839
Q+ R + + + + + L+ ++ LP ++ + GR+H S N T TGRLS+
Sbjct: 607 QQLRGKHEIVGDILDYRGLKKLLGTYVDALP---KLINTRTGRIHTSFNQTVTATGRLSS 663
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P +D +IR+AFI G ADY Q+ELR++AHL+ M++AF+ G
Sbjct: 664 SEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREGY 723
Query: 900 DFHSRTAMNMY 910
D H+ TA +Y
Sbjct: 724 DIHAATAAKIY 734
>gi|429333723|ref|ZP_19214414.1| DNA polymerase I [Pseudomonas putida CSV86]
gi|428761527|gb|EKX83750.1| DNA polymerase I [Pseudomonas putida CSV86]
Length = 937
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALE 851
L + S+ L S + LP Q ++ + R+H S TGRLS+ PNLQN PA
Sbjct: 636 LMQYRSLSKLKSTYTDRLPEQ---INPRTQRIHTSYGQAVAATGRLSSSDPNLQNIPART 692
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +IRQAFIA PG L+ ADY Q+ELRI+AHL+ + +++AF+ G D H+ TA ++
Sbjct: 693 AEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSGDEGLMNAFRNGLDVHTATAAEVF 751
>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
Length = 942
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH + N TGRL++ PNLQN P + +IR+AFIA PG+ ++ ADY
Sbjct: 662 INAHTGRVHTNYNQAVAITGRLASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYS 721
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ ML AF D H TA ++ R+AV+ Q
Sbjct: 722 QIELRIMAHLSKDAGMLQAFANNEDIHRATAAEIFGVERSAVDNEQ 767
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 58/249 (23%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++L +F P E+P+IKKV N +D HVL N+G+ ++G DT+ + + +S R G+
Sbjct: 415 EVLAKFKPLLENPTIKKVGQNLKYDKHVLANHGIALNGIAHDTLLQSYVLESHR----GH 470
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
++ L+ + + + ++++ KG GF ++++
Sbjct: 471 GMDELSA--RHLGIEPISFEQVAGKGAKQVGF-NQVTI---------------------- 505
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDF-YQEY 601
E+ Y+A D+ TL+L+++L ++L+ D K +F Y +
Sbjct: 506 ----------EVAAEYAAEDADITLQLHEALSPQVLQ-----DDK-------LNFIYSQV 543
Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
P E L +E G+L+D L+ R E + A + N+GS
Sbjct: 544 EMPSMECLFTIERNGVLIDANMLN------RQSNEIGMKLMELEAKAFELAGQPFNLGSP 597
Query: 662 TQLRQLLFG 670
QL+++LFG
Sbjct: 598 KQLQEILFG 606
>gi|431800147|ref|YP_007227050.1| DNA polymerase I [Pseudomonas putida HB3267]
gi|430790912|gb|AGA71107.1| DNA polymerase I [Pseudomonas putida HB3267]
Length = 915
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L + S+ L S + L G ++ + GR+H S TGRLS+ PNLQN P +
Sbjct: 614 LMQYRSLSKLKSTYTDKLPG-QINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAE 672
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAF+A PG L+ ADY Q+ELRI+AHLA + +L AF+ D H TA ++
Sbjct: 673 GRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDVHRATAAEVFGVA 732
Query: 914 RNAVETGQ 921
V T Q
Sbjct: 733 LEDVTTDQ 740
>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
Length = 910
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + TGRL++ PNLQN P + +IR+AFIA PG S+I ADY
Sbjct: 630 INPATGRVHTSYSQAVAITGRLASSDPNLQNIPVRTAEGRRIREAFIAPPGASIISADYS 689
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ + +L AF G D H TA ++ R+ V + Q
Sbjct: 690 QIELRIMAHLSQDEGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQ 735
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 135/325 (41%), Gaps = 88/325 (27%)
Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDL-- 416
W+L K LV A DTE +D Q V + FS+ +G A +V L
Sbjct: 325 WLLLLKSAPLV-ALDTETTSLDPMQAKLVG----MSFSVEAGKAA---------YVPLAH 370
Query: 417 -LDGGGRDL-----LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
G + L L + P ED SI K+ N +D HVL N+G+ ++G DT+ +
Sbjct: 371 DYTGAPQQLDFTAALRQLRPMLEDASIPKLGQNLKYDKHVLANHGIALNGITHDTLLQSY 430
Query: 471 LWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLK 530
+ + S RT G M ++M+ + G + +
Sbjct: 431 VLE-SHRTHG----------------------------------MDDLAMRHL-GVQTVT 454
Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
+ AGK + P ++ E Y+A D+ TL+L+++L ++ + D K
Sbjct: 455 YEQIAGKGAKQVPFSQISIETAA---EYAAEDADITLQLHQALYPQI-----EADDK--- 503
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKW 645
+ Y+E P +IL +E G+L+D+ L EI +K+ EQ+A
Sbjct: 504 ---LAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQQA-------- 552
Query: 646 ASKHCPDAKYMNVGSDTQLRQLLFG 670
+ + N+GS QL+++LFG
Sbjct: 553 ---YDIAGQPFNLGSPKQLQEILFG 574
>gi|419801955|ref|ZP_14327158.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK262]
gi|385192322|gb|EIF39728.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK262]
Length = 932
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
KGA ++N ++ +E + + L E + L S + LP V+ + GRVH
Sbjct: 609 KGAPSTNEEVL---EELAFSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 662
Query: 827 SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ ADY Q+ELRI+AHL
Sbjct: 663 SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722
Query: 886 ANCKSMLDAFKAGGDFHSRTAMNMY 910
+ + +++AF G D H TA ++
Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIF 747
>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
pallidum]
Length = 997
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 775 YTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus marinus MC-1]
gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus marinus MC-1]
Length = 911
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GRVH S N T TGRLS+ PNLQN P ++ IR AFIA G SL+ ADY Q+EL
Sbjct: 635 TGRVHTSYNQAVTLTGRLSSSDPNLQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIEL 694
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+ N + +AF AG D H+ TA ++
Sbjct: 695 RVLAHMGNVSRLKEAFHAGLDIHAATAAELF 725
>gi|407801938|ref|ZP_11148781.1| DNA polymerase I [Alcanivorax sp. W11-5]
gi|407024255|gb|EKE35999.1| DNA polymerase I [Alcanivorax sp. W11-5]
Length = 908
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V ++GRVH S + TGRLS+ PNLQN P ++ +IRQAF A G ++ ADY
Sbjct: 628 VQPRSGRVHTSYHQAVAATGRLSSSDPNLQNIPVRSEEGRRIRQAFRAPAGRKIVAADYS 687
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
Q+ELRI+AHL+ K +LDAF G D H TA ++ +AV
Sbjct: 688 QIELRIMAHLSGDKGLLDAFAHGLDIHRATAAEVWEKSLDAV 729
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 122/311 (39%), Gaps = 80/311 (25%)
Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA------DFGNGKSCIWVDLLDGGGR 422
+ A DTE +D Q V + F+I G A D+ D LD R
Sbjct: 331 LFAFDTETTSLDYMQAELVG----VSFAISPGEAAYVPVAHDYPGAP-----DQLD---R 378
Query: 423 D-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
D +L + P EDP +KK+ N +D VL Y + + G DTM + + DS
Sbjct: 379 DAVLKKLKPLLEDPGLKKIGQNLKYDMSVLAQYDITLRGVEYDTMLESYVLDSV------ 432
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
A + DM + F+G I+ +DI G+ + + I
Sbjct: 433 ------------------ATRHDMD--SLALKFLGHRNIAFEDIAGKGAKQLTFNQIAID 472
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFY 598
AP Y+A D+ TL+L+++L W +L+ P ++ +
Sbjct: 473 DAAP--------------YAAEDADITLRLHETL--------WPRLEAIP----TLARVF 506
Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
+E P +L ++E G VD L ++ A++ AA+ + H + N+
Sbjct: 507 REIEVPLVSVLSRIERNGCYVDAGML-RLQSQELAKKMAALEK-----QAHEIAGRPFNL 560
Query: 659 GSDTQLRQLLF 669
S QL ++L+
Sbjct: 561 NSTKQLGEILY 571
>gi|386360445|ref|YP_006058690.1| DNA polymerase I [Thermus thermophilus JL-18]
gi|383509472|gb|AFH38904.1| DNA polymerase I [Thermus thermophilus JL-18]
Length = 831
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPSTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 663
>gi|375091430|ref|ZP_09737723.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
gi|374563530|gb|EHR34843.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
Length = 878
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 789 CDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
D +S L I LI + + L+G+ + G K+GR+H N TGRLS+
Sbjct: 563 IDVLSKLRNEHEIIPLIEQYRQVSKLKGTYIDGLIKVISKDGRIHSKFNQTVAATGRLSS 622
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++ IR+AF+A L+ ADY Q+ELR+LA L K+MLDAF+ G
Sbjct: 623 TDPNLQNIPIKTEEGRMIRKAFVAGEDKLLVSADYSQIELRVLAALTKDKNMLDAFEHGI 682
Query: 900 DFHSRTAMNMY 910
D H++TA ++
Sbjct: 683 DIHTKTASEVF 693
>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
Length = 926
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 804 LISNFI--LPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
L S+++ LPL V G N R+H S + T TGRLS+R PNLQN P ++D +IR A
Sbjct: 635 LFSSYVDTLPLM---VDG-NDRIHTSFIQTGTATGRLSSREPNLQNIPVRDEDGRRIRLA 690
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
F A PG LI ADY Q+EL ILAHL+ ++ AF G D H TA ++
Sbjct: 691 FTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHRATAALIF 740
>gi|333929795|ref|YP_004503374.1| DNA polymerase I [Serratia sp. AS12]
gi|333934748|ref|YP_004508326.1| DNA polymerase I [Serratia plymuthica AS9]
gi|386331618|ref|YP_006027788.1| DNA polymerase I [Serratia sp. AS13]
gi|333476355|gb|AEF48065.1| DNA polymerase I [Serratia plymuthica AS9]
gi|333493855|gb|AEF53017.1| DNA polymerase I [Serratia sp. AS12]
gi|333963951|gb|AEG30724.1| DNA polymerase I [Serratia sp. AS13]
Length = 933
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ ADY Q+EL
Sbjct: 656 SGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIEL 715
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ + +L AF AG D H TA ++
Sbjct: 716 RIMAHLSQDEGLLKAFAAGKDIHRATAAEVF 746
>gi|419846091|ref|ZP_14369348.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK2019]
gi|386414386|gb|EIJ28942.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK2019]
Length = 932
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +++ ADY
Sbjct: 653 VNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYS 712
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 713 QIELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIF 747
>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
Length = 934
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
+++ GRVH S +I TGRL++ PNLQN P ++ +IR+AF+A G++L+ DY
Sbjct: 652 HINPDTGRVHTSYSIAGANTGRLASNDPNLQNIPVRSEEGRRIREAFVAPEGHTLVSLDY 711
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRILAH+A+ ++ AF+ G D H+ TA M+
Sbjct: 712 SQIELRILAHMADIDALKQAFRDGLDIHAMTASEMF 747
>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
Length = 878
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
V +VH N T+TGRLS+ PNLQN P ++ KIRQAFI + P + ADY
Sbjct: 597 VHRDTNKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADY 656
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+AN ++++DAF+ G D H++TAM+++
Sbjct: 657 SQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIF 692
>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
Length = 830
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L +I PL + V K R+H N T TGRLS
Sbjct: 515 AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+V DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 574 SSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633
Query: 899 GDFHSRTAMNMY 910
D H++TA M+
Sbjct: 634 QDIHTQTASWMF 645
>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 956
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Query: 779 FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
++T QE E + I + I + S ++ L+ NV ++GR+H + N T
Sbjct: 635 YSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTYVEGLK--NVIDEDGRIHSNFNQTVTT 692
Query: 834 TGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADYGQLELRILAHLANCKSML 892
TGRLS+ PNLQN P + +IR+ FI + G++L+ DY Q+ELR+LAH+A ++M+
Sbjct: 693 TGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMI 752
Query: 893 DAFKAGGDFHSRTAMNMY 910
DAFK D H++TA ++
Sbjct: 753 DAFKHHSDIHTKTASEVF 770
>gi|393775970|ref|ZP_10364267.1| DNA polymerase I [Ralstonia sp. PBA]
gi|392716913|gb|EIZ04490.1| DNA polymerase I [Ralstonia sp. PBA]
Length = 930
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH + T TGRL++ PNLQN P ++ +IR+AFIA PGN ++ ADY
Sbjct: 650 VNPRTGRVHTTYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAGPGNVIVSADYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AH++ +++L AF G D H TA ++
Sbjct: 710 QIELRIMAHISGDENLLRAFAEGKDIHRATAAEIF 744
>gi|357974770|ref|ZP_09138741.1| DNA polymerase I [Sphingomonas sp. KC8]
Length = 925
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 764 EETEYKGAVASNNKIFAT-----EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
E KG + +++T E+ A + + + + + + L S + LQ + ++
Sbjct: 587 ERMGLKGGRKGKSGVYSTDVNEMERLAEDGVEIATKVLDWRQLSKLKSTYTDALQ-AQIN 645
Query: 819 GKNGRVHCSLNINT-ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
GRVH S ++ +TGRLS+ PNLQN P + +IR AF+A PG L+ ADY Q+
Sbjct: 646 PATGRVHTSFSLAVAQTGRLSSTDPNLQNIPIRSEMGRRIRDAFVAEPGMVLLSADYSQI 705
Query: 878 ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ELR+ AH+A+ + AF G D HS TA ++
Sbjct: 706 ELRLAAHMADVPQLKAAFAEGADIHSMTAQELF 738
>gi|336234370|ref|YP_004586986.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
gi|335361225|gb|AEH46905.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
Length = 878
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
+VH N T+TGRLS+ PNLQN P ++ KIRQAFI + P + ADY Q+ELR
Sbjct: 603 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 662
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+LAH+AN ++++DAF+ G D H++TAM+++
Sbjct: 663 VLAHIANDENLIDAFRHGLDIHTKTAMDIF 692
>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716484|ref|YP_005304820.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|379725167|ref|YP_005317353.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|385793869|ref|YP_005830275.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|421754721|ref|ZP_16191687.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|377826616|gb|AFB79864.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|377828161|gb|AFB78240.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|409090484|gb|EKM90500.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
Length = 897
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L F D HS TA
Sbjct: 680 RIMAHLSKDKNLLKVFNQNLDIHSATA 706
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|407786617|ref|ZP_11133762.1| DNA polymerase I [Celeribacter baekdonensis B30]
gi|407201338|gb|EKE71339.1| DNA polymerase I [Celeribacter baekdonensis B30]
Length = 935
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-L 828
GA A+ I E A E D + + + + L S + LQ ++ + GRVH S +
Sbjct: 610 GAYATGVDIL--EDLASEGQDLPARVLDWRQLSKLKSTYTDALQ-RFINPETGRVHTSYV 666
Query: 829 NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
TGRLS+ PNLQN P + +IR+AFIA G LI DY Q+ELRILAH+A
Sbjct: 667 QTGAVTGRLSSTDPNLQNIPVRSDEGRRIREAFIAPKGRKLISLDYSQIELRILAHVAGI 726
Query: 889 KSMLDAFKAGGDFHSRTAMNMY 910
S+ AF+ G D H+ TA M+
Sbjct: 727 DSLKQAFRDGLDIHAMTASEMF 748
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 65/260 (25%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L+ P ED SI K+ N +D + G+ V+ + DTM M+ + G +
Sbjct: 408 VLDALKPVLEDDSILKIGQNMKYDAKIFARNGVTVAPYD-DTMLMSYALHAGLHNHGMDT 466
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
L E ++ + + +KL GS + T
Sbjct: 467 LS--------------------------ERYLDHVPIP----TKKLL--GSGKSMITFDK 494
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
VE + ++Y+A D+ TL+L++ K KL + + Y+ +
Sbjct: 495 VEINK------AVAYAAEDADVTLRLWQVFKSKLHT------------EQVTTVYETLER 536
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G++VDR+ LS + A A++ A + A H + NVGS Q
Sbjct: 537 PLSPVLARMEMAGVMVDRDVLSRMSN-AFAQKMAGLE-----AEIHDLAGENFNVGSPKQ 590
Query: 664 LRQLLFGGKPNSKDDSESLP 683
L ++LF D SLP
Sbjct: 591 LGEILF--------DKMSLP 602
>gi|386829462|ref|ZP_10116569.1| DNA polymerase I [Beggiatoa alba B18LD]
gi|386430346|gb|EIJ44174.1| DNA polymerase I [Beggiatoa alba B18LD]
Length = 913
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q + K GRVH S T TGRLS+ PNLQN P + +IRQAFIA G
Sbjct: 629 LPQQ---IKAKTGRVHTSYQQAVTTTGRLSSTEPNLQNIPIRTPEGRRIRQAFIAPKGFK 685
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+I ADY Q+ELRI+AHL+ +L AF G D H TA ++
Sbjct: 686 IIAADYSQIELRIMAHLSQDAGLLKAFSLGEDIHRATASEVF 727
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 56/240 (23%)
Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
P E+P I K+ N FD H+L N+G+++ G D++ + + DS+R +
Sbjct: 393 PILENPKIGKIGQNIKFDAHILANHGIQLQGIAYDSLLESYILDSTRPHD---------- 442
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
D A K T E GK + + +F + L
Sbjct: 443 ------MDSLALAHLQIKTTTFEEVAGKGAKQLLFSQVAL-------------------- 476
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
++ Y+A D+ T +L++ L W D + P S+ + E P +L
Sbjct: 477 ---DVATDYAAEDADVTWQLHRKL--------WA-DLQTTP--SLQTIFTEIEMPLIPVL 522
Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
+ ME G+++D +K+ E A H N+ S QL+ +LF
Sbjct: 523 LTMERNGVMIDA------DKLYNQSNELASQLQALELQAHEQAGMVFNLNSPKQLQTILF 576
>gi|423718989|ref|ZP_17693171.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
gi|383367892|gb|EID45167.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
Length = 877
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
+VH N T+TGRLS+ PNLQN P ++ KIRQAFI + P + ADY Q+ELR
Sbjct: 602 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 661
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+LAH+AN ++++DAF+ G D H++TAM+++
Sbjct: 662 VLAHIANDENLIDAFRHGLDIHTKTAMDIF 691
>gi|393763384|ref|ZP_10352005.1| DNA polymerase I [Alishewanella agri BL06]
gi|392605724|gb|EIW88614.1| DNA polymerase I [Alishewanella agri BL06]
Length = 930
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + TGRLS+ PNLQN P ++ +IRQAFIA G L+ DY
Sbjct: 649 VNKATGRVHTSYHQAVAATGRLSSTEPNLQNIPIRTEEGRRIRQAFIAPKGKLLMAIDYS 708
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K++LDAF G D H TA ++
Sbjct: 709 QIELRIMAHLSQDKALLDAFAKGLDVHRATAAEVF 743
>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
gi|421751048|ref|ZP_16188106.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|421752904|ref|ZP_16189914.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|421756636|ref|ZP_16193539.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|421758503|ref|ZP_16195349.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|423051306|ref|YP_007009740.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
gi|424673771|ref|ZP_18110702.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|409088923|gb|EKM88979.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|409089034|gb|EKM89088.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|409092195|gb|EKM92173.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|409093375|gb|EKM93321.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|417435546|gb|EKT90436.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|421952028|gb|AFX71277.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
Length = 897
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L F D HS TA
Sbjct: 680 RIMAHLSKDKNLLKVFNQNLDIHSATA 706
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|335040619|ref|ZP_08533744.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
gi|334179483|gb|EGL82123.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
Length = 881
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 11/141 (7%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLNIN-TETGRL 837
+ D + L I S I ++ ++ LQ + + G + G+VH + T TGRL
Sbjct: 562 SADVLEKLAPQHEIVSKILDYRQLVKLQTTYIEGLLKEINEQTGKVHTTFQQTITATGRL 621
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
S+ PNLQN P ++ KIRQAF+ + +I+A DY Q+ELRILAHL+ + +++AF+
Sbjct: 622 SSTDPNLQNIPIRLEEGRKIRQAFVPSREDQVILAADYSQIELRILAHLSQDQGLVEAFR 681
Query: 897 AGGDFHSRTAMNMYPHIRNAV 917
G D H++TAM+++ R+ V
Sbjct: 682 QGEDIHTKTAMDVFHVKRDEV 702
>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 897
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L F D HS TA
Sbjct: 680 RIMAHLSKDKNLLKVFNQNLDIHSATA 706
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTTILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
Length = 830
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L +I PL + V K R+H N T TGRLS
Sbjct: 515 AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+V DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 574 SSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633
Query: 899 GDFHSRTAMNMY 910
D H++TA M+
Sbjct: 634 QDIHTQTASWMF 645
>gi|422939217|ref|YP_007012364.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
gi|407294368|gb|AFT93274.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
Length = 897
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L F D HS TA
Sbjct: 680 RIMAHLSKDKNLLKVFNQNLDIHSATA 706
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|408377147|ref|ZP_11174750.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
gi|407749106|gb|EKF60619.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
Length = 991
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 711 RVHTGYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 770
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 771 LAHVADIPQLRQAFADGIDIHAMTASEMF 799
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 134/334 (40%), Gaps = 88/334 (26%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG------KSC 411
+W+ + LV A DTE +D Q V I ++ S D K+
Sbjct: 382 LWIAAARETGLV-AFDTETTSLDPMQAELVGVSLAIQDNVLSPGSTDIRAAYIPLAHKTG 440
Query: 412 IWVDLLDGGG-------RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
I DLL GG ++ L EDPS+ KV N +D V++ +G+ + F D
Sbjct: 441 IG-DLLGGGHAEGQIPMKEALAALKDLLEDPSVLKVAQNLKYDYLVMKRHGVMLQSFD-D 498
Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
TM M+ + D+ + G + ++AL+ D G+T I+ KD+
Sbjct: 499 TMLMSYVLDAGK---GNHGMDALS---------------DKWLGHT------PIAYKDVA 534
Query: 525 GRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL 584
G +GK S + ++ R +Y+A D+ T++L+ LK +L
Sbjct: 535 G---------SGKSSVTFDLVDIDRA-----TAYAAEDADVTMRLWMVLKPRL------- 573
Query: 585 DGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEA-- 637
+ + Y+ +P +L ME G+ VDR+ LS + +K A E E
Sbjct: 574 -----AAEGLTRIYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAATEDEVYE 628
Query: 638 -AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
A RF N+GS QL +LFG
Sbjct: 629 LAGERF--------------NIGSPKQLGDILFG 648
>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
Length = 931
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFQQGKDIHAATA 740
>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
Length = 909
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 795 LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKD 853
L E + L S + L G ++ + GR+H S + T TGRLS+ PNLQN P ++
Sbjct: 608 LIEHRGLSKLKSTYTDKLPGM-INPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTEE 666
Query: 854 RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
+IRQAFIA G ++ ADY Q+ELRI+AHL+ +L+AF+ D HS TA ++
Sbjct: 667 GRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLLEAFRENLDVHSATAAEVFGVS 726
Query: 914 RNAVETGQ 921
+AV Q
Sbjct: 727 LDAVSGEQ 734
>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
Length = 948
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + + +TGRLS+ PNLQN P +IR+AF+ GN L+ ADY
Sbjct: 667 INPDTGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYS 726
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+ AH+A+ + +AF G D H+RTA MY
Sbjct: 727 QIELRLAAHMADVPELKEAFAEGEDIHARTAREMY 761
>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
Length = 931
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 650 INPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 710 QIELRIMAHLSGDQALLDAFQQGKDIHAATA 740
>gi|2506365|sp|P80194.2|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
polymerase 1
gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
Length = 834
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
Length = 875
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 780 ATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ET 834
+T+QE EA + I + +I L + +I + ++ ++G++H + +T
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGM--VDLIKEDGKIHTTFQQTIAQT 613
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GR+S+ PNLQN P ++ IR+AF+ G+ L+ ADY Q+ELR+LA LAN + M+DA
Sbjct: 614 GRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDA 673
Query: 895 FKAGGDFHSRTAMNMY 910
FK G D H +TA ++
Sbjct: 674 FKNGADIHRKTASEVF 689
>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 897
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
NGRVH S N T TGRLS+ PNLQN P + KIR+AFIA G ++ ADY Q+EL
Sbjct: 620 NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTA 906
RI+AHL+ K++L F D HS TA
Sbjct: 680 RIMAHLSKDKNLLKVFNQNLDIHSATA 706
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
+L++ P F D KV HN+ FD VL Y ++++G DTM MA + SS G +
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
+++L+ K+ G + AG T
Sbjct: 427 IDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
+ L + + E+ Y+A D+ T +L+ K LLE K +F Y E
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
P IL +ME G+ +D L +Q A++ K C + + N+ S
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552
Query: 662 TQLRQLLF 669
QLR++LF
Sbjct: 553 VQLREILF 560
>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
gi|212674099|gb|EEB34582.1| DNA-directed DNA polymerase [Desulfovibrio piger ATCC 29098]
Length = 919
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 792 ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
+ ++ + ++ + S ++ PL + GR+H + N T TGRLS+ PNLQN P
Sbjct: 612 VDSILQYRKLEKMRSTYLDPL--PRLVDPQGRIHTTFNQKATATGRLSSSNPNLQNIPVR 669
Query: 851 EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++R FIA PG L+ ADY Q+ELR+LAH++ ++L+AF+ G D H+RTA +Y
Sbjct: 670 GPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVY 729
>gi|410096891|ref|ZP_11291876.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
gi|409225508|gb|EKN18427.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
++ R + L E + L+S +I L ++ + G+VH S N T TGRLS+
Sbjct: 614 EKMRSKHPVVGKLLEYRGLKKLLSTYIDALP-ELINPETGKVHTSFNQTVTATGRLSSTN 672
Query: 842 PNLQNQPALEKDRYKIRQAFIAVPGN---SLIVADYGQLELRILAHLANCKSMLDAFKAG 898
PNLQN P ++ +IR+AFI P N + ADY Q+ELRI+AHL+ + M++AF++G
Sbjct: 673 PNLQNIPIRDELGREIRKAFI--PDNEDCTFFSADYSQIELRIMAHLSQDEHMIEAFRSG 730
Query: 899 GDFHSRTAMNMY 910
D HS TA +Y
Sbjct: 731 ADIHSATAAKIY 742
>gi|437891917|ref|ZP_20849344.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435326721|gb|ELO98507.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
Length = 673
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 389 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 444
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 445 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 487
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 71 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 122
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 123 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 180
Query: 459 SGFHADTM 466
G DTM
Sbjct: 181 RGIAFDTM 188
>gi|440233105|ref|YP_007346898.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
gi|440054810|gb|AGB84713.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
Length = 932
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G ++ ADY Q+EL
Sbjct: 655 SGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPKGYRILAADYSQIEL 714
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
RI+AHL+ + +L AF AG D H TA ++
Sbjct: 715 RIMAHLSQDEGLLKAFAAGEDIHRATASEVF 745
>gi|419952743|ref|ZP_14468890.1| DNA polymerase I [Pseudomonas stutzeri TS44]
gi|387970788|gb|EIK55066.1| DNA polymerase I [Pseudomonas stutzeri TS44]
Length = 913
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYRLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 692 SQIELRIMAHLAQDAGLLHAFQNNLDVHRATAAEVF 727
>gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
Length = 994
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
S + + RVH S ++ +T TGRLS+ PNLQN P ++ KIR+AF+A G LI AD
Sbjct: 708 SYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISAD 767
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 768 YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMF 804
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 149/387 (38%), Gaps = 102/387 (26%)
Query: 342 YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP 401
Y V +D + A W+ LV A DTE +D Q E++ S+ + P
Sbjct: 384 YETVTSLDRLKA-----WVAEAVETGLV-AFDTETTSLDAMQ------AELVGVSLATAP 431
Query: 402 EADFGNGKSCIWVDLLDGGGR-----------------DLLNEFAPFFEDPSIKKVWHNY 444
GK+C +V L G + L+ P ED + K+ N
Sbjct: 432 ------GKAC-YVPLAHVDGEGDLLGGGGLVEGQIPLAEALDVLRPMLEDAGVLKIAQNL 484
Query: 445 SFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKD 504
+D V+ YG++++ + DTM ++ + D+ + GG ++ L
Sbjct: 485 KYDWLVMARYGVEIAPYD-DTMLLSYVLDAGK---GGNGMDELA---------------- 524
Query: 505 MSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
E ++ I K++ G G A P+++ +Y+A D
Sbjct: 525 -------ERWLDHTPIPFKEVAG------SGKAMVTFDKVPIDKAT--------AYAAED 563
Query: 563 SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
+ TL+L++ LK +L+ + M Y+ +P +L +ME G+ VDR+
Sbjct: 564 ADVTLRLWRVLKPRLV------------AERMATVYETLERPMVPVLARMERRGISVDRQ 611
Query: 623 YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSE 680
LS + A+ AA+ A H + N+GS QL +LFG G P K
Sbjct: 612 MLSRLSG-DFAQGMAALE-----AEIHALAGESFNIGSPKQLGDILFGKMGLPGGKKTKT 665
Query: 681 SLPIERIFKVPNTEGVIAEGKKTPSKF 707
V + + AEG + PSK
Sbjct: 666 G---AWSTSVSVLDDLAAEGHELPSKI 689
>gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
gi|396080066|dbj|BAM33442.1| DNA polymerase I [Helicobacter cinaedi ATCC BAA-847]
Length = 913
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 754 AHDL-DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPL 812
AH L ++ G KG ++++ K ++ D I E + L S +I PL
Sbjct: 578 AHILFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRES---NKLKSTYIEPL 634
Query: 813 QGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
+ + R+H S N T TGRLS++ PNLQN P ++ KIRQAFI+ G+SLI
Sbjct: 635 LRLGRTNETHRIHTSFLQNGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLIS 694
Query: 872 ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELR+LAH S++++F D H TA ++
Sbjct: 695 IDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLF 733
>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
Length = 945
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ +++ GRVH S +I TGRL++ PNLQN P ++ +IR+
Sbjct: 649 LSKLKSTYTDALQ-DHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIRE 707
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AFIA G L+ DY Q+ELRILAH+A S+ AF+ G D H+ TA M+
Sbjct: 708 AFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHAMTASEMF 758
>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
Length = 1004
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 823 RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH C T TGRLS+ PNLQN P + KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726 RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 786 LAHVADIPQLRQAFADGVDIHAMTASEMF 814
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 68/265 (25%)
Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
DLL GG GR+ L+ EDPS+ KV N + V++ +G+ + F DTM
Sbjct: 458 DLLGGGPVDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFD-DTML 516
Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFG 525
M+ + D+ G + +++L E ++G I+ KD+ G
Sbjct: 517 MSYVLDAG---NGAHGMDSLA-----------------------ERWLGHTPIAYKDVTG 550
Query: 526 RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLD 585
G+ S ++ + +Y+A D+ L+L+ LK +L
Sbjct: 551 ---------TGRSSLTFDFVDIDKA-----TAYAAEDADIALRLWHVLKPRL-------- 588
Query: 586 GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKW 645
K + Y+ +P +L ME G+ VDR+ LS + A + +
Sbjct: 589 ----AAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRL 644
Query: 646 ASKHCPDAKYMNVGSDTQLRQLLFG 670
A + +GS QL +LFG
Sbjct: 645 A------GETFTIGSPKQLGDILFG 663
>gi|384531329|ref|YP_005715417.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
gi|384538052|ref|YP_005722137.1| DNA polymerase I [Sinorhizobium meliloti SM11]
gi|407722514|ref|YP_006842176.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
gi|433611964|ref|YP_007188762.1| DNA polymerase I [Sinorhizobium meliloti GR4]
gi|333813505|gb|AEG06174.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
gi|336034944|gb|AEH80876.1| DNA polymerase I [Sinorhizobium meliloti SM11]
gi|407320746|emb|CCM69350.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
gi|429550154|gb|AGA05163.1| DNA polymerase I [Sinorhizobium meliloti GR4]
Length = 1004
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 823 RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH C T TGRLS+ PNLQN P + KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726 RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 786 LAHVADIPQLRQAFADGVDIHAMTASEMF 814
>gi|340708407|pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In Complex With A
Blunt-Ended Dna And Ddatp
gi|340708410|pdb|3PO5|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Auqaticus In Complex With An
Abasic Site And Ddatp
gi|340708431|pdb|3PY8|A Chain A, Crystal Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In A Closed Ternary
Complex With Dna And Ddctp
Length = 540
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 225 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q ELR+LAHL+ ++++ F+ G
Sbjct: 284 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQKELRVLAHLSGDENLIRVFQEG 343
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 344 RDIHTETASWMFGVPREAVD 363
>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
Length = 1020
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P ++ +IR+AF+AVPG L+ ADY Q+ELR+
Sbjct: 742 RVHTSYALAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQIELRL 801
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LA +A ++ AF+ G D H+ TA M+
Sbjct: 802 LAEIAEIPALRQAFRDGIDIHAMTASEMF 830
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 109/307 (35%), Gaps = 68/307 (22%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVI-----CFSIYSGPEADFGNGKSCIWVDLLDG--GGRD 423
A DTE +D Q V + C+ P A G G LL G D
Sbjct: 434 AFDTETTSLDPMQADLVGVSLALAPNEACYI----PLAHVGAGDGLFTEGLLPGQIPFND 489
Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
L ED K+ HN +D VL +G+ V+ + TM M+ D+ R GG+
Sbjct: 490 ALAALKGMLEDGGTLKIGHNVKYDAAVLARHGITVAPYDC-TMCMSYALDAGR---GGHG 545
Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
++ L+ K + A+ + KG + + F R L+ +
Sbjct: 546 MDELS--IKYLGHTPIAFTEVAGKGKS----------QITFDRVPLEAATAYAAEDADV- 592
Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
TL+L++ LK +L P + M Y+ +
Sbjct: 593 ----------------------TLRLWRVLKPRL------------PSEGMTTVYETLER 618
Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
P +L +ME G+ +DR L AR E A R + +NVGS Q
Sbjct: 619 PLIAVLARMEARGISIDRATL------ARLSSEFAQGAARLEDEISGLAGEKINVGSPKQ 672
Query: 664 LRQLLFG 670
+ LLFG
Sbjct: 673 IGDLLFG 679
>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
Length = 935
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 801 IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
+ L S + LQ +++ GRVH S I+ TGRLS+ PNLQN P ++ +IR+
Sbjct: 639 LSKLKSTYTDALQ-EHINKDTGRVHTSYVISGANTGRLSSTDPNLQNIPVRSEEGRRIRE 697
Query: 860 AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
AF+A G +++ DY Q+ELRILAH+A ++ AF+ G D H+ TA M+
Sbjct: 698 AFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHAMTASEMF 748
>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
Length = 957
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + T TGRLS+ PNLQN P ++ +IRQAF+A G ++ DY
Sbjct: 676 INPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYS 735
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ +++LDAF+ G D H+ TA
Sbjct: 736 QIELRIMAHLSGDQALLDAFQQGKDIHAATA 766
>gi|417369474|ref|ZP_12140653.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353584160|gb|EHC44344.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 317
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 123 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 178
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 179 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 221
>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal),
partial [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 963
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL +SG RVH S + T TGRLS+R PNLQN P ++ +IR AFIA G
Sbjct: 672 LPLMIHPLSG---RVHTSYHQAVTSTGRLSSRDPNLQNIPVRNEEGRRIRHAFIAPRGYQ 728
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L+AF G D H TA ++
Sbjct: 729 IVAADYSQIELRIMAHLSQDQGLLNAFSEGQDIHLITAAEVF 770
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 141/348 (40%), Gaps = 78/348 (22%)
Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
VW+ K L A DTE +D K H I F++ G A G + +
Sbjct: 369 VWLERLKKASLF-AIDTETDGLDTKTA----HLIGISFAVAPGKAAYLPLGHD--YPEAP 421
Query: 418 DGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
RD +L F P EDP KV N FD +L NYG+K+ G DTM + +++S
Sbjct: 422 AQLNRDKVLALFKPLLEDPQALKVGQNLKFDQSLLANYGIKLQGIAFDTMLESYVFNS-- 479
Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
G + +++L+ +R + + +S +DI G K K +
Sbjct: 480 -VAGRHDMDSLS-ERHLNHK--------------------TLSFEDIAG--KGKNQLTFN 515
Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
+I P+E+ Y+A D+ TL+L+ +L KL E +
Sbjct: 516 QI----PLEQAA--------IYAAEDADVTLRLHLALWPKLKE-----------NPDLMK 552
Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
QE P +L +ME G+++D + L K E + + K A H +
Sbjct: 553 VLQEIEMPLLSVLSRMERTGVMIDPDILLNHSK----ELQLRLTELEKKA--HDIAGETF 606
Query: 657 NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP-----NTEGVIAE 699
N+ S QL+ +L+ + ++LP+ + K P E V+AE
Sbjct: 607 NLNSTQQLQTILY--------EKQTLPVLK--KTPKGAPSTNEAVLAE 644
>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
gi|387869406|ref|YP_005800775.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
Length = 929
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ +GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G+
Sbjct: 644 LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHR 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF + D H TA ++
Sbjct: 701 IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF 742
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
D+L P EDP +KV N FD VL+ Y +++ G DTM
Sbjct: 400 DVLARLKPLLEDPQAQKVGQNLKFDRGVLKRYDIELQGIRFDTM 443
>gi|429085852|ref|ZP_19148810.1| DNA polymerase I [Cronobacter condimenti 1330]
gi|426544924|emb|CCJ74851.1| DNA polymerase I [Cronobacter condimenti 1330]
Length = 695
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P + +IRQAFIA
Sbjct: 412 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYV 468
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++ +V T Q
Sbjct: 469 IVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSTEQ 521
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 69/273 (25%)
Query: 413 WVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
++D D RD +L P ED ++ KV N FD +L+NYG+++ G DTM + +
Sbjct: 157 YLDAPDQLSRDRVLELLKPLLEDETLVKVGQNLKFDRGILQNYGIELRGIVFDTMLESYI 216
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
DS G + +++L+ + + +++ KG F +I ++
Sbjct: 217 LDS---VSGRHDMDSLSS--RWLKHTTITFEQIAGKGKNQLTF-NQIDLE---------- 260
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
AG+ Y+A D+ TL+L+ + KL +
Sbjct: 261 --QAGR--------------------YAAEDADVTLQLHLKMWPKLQQ-----------H 287
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIE-KVARAEQEAAVNRFRKWA 646
K + ++ P +L ++E G+ +D L EI K+A EQ+A
Sbjct: 288 KGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHTHSQEIALKLAELEQKA--------- 338
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF---GGKPNSK 676
H + N+ S QL+ +LF G KP K
Sbjct: 339 --HEIAGEPFNLSSTKQLQTILFEKQGIKPLKK 369
>gi|386762600|ref|YP_006236236.1| DNA polymerase I [Helicobacter cinaedi PAGU611]
gi|385147617|dbj|BAM13125.1| DNA polymerase I [Helicobacter cinaedi PAGU611]
Length = 913
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 754 AHDL-DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPL 812
AH L ++ G KG ++++ K ++ D I E + L S +I PL
Sbjct: 578 AHILFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRES---NKLKSTYIEPL 634
Query: 813 QGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
+ + R+H S N T TGRLS++ PNLQN P ++ KIRQAFI+ G+SLI
Sbjct: 635 LRLGRTNETHRIHTSFLQNGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLIS 694
Query: 872 ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
DY Q+ELR+LAH S++++F D H TA ++
Sbjct: 695 IDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLF 733
>gi|424865266|ref|ZP_18289135.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
gi|400758872|gb|EJP73072.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
Length = 891
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG ++N + E E I + + S ++ ++ L+ K+ R+H S
Sbjct: 567 KGQPSTNEETLKRLAEEYELPKVILEYRSLAKLKSTYTDSLVALENP----KSLRIHTSY 622
Query: 829 N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
+ T TGRLS+ PNLQN P + KIR+AF+ GN+LI ADY Q+ELRI+AHL+
Sbjct: 623 HQAITSTGRLSSTEPNLQNIPIKTAEGRKIREAFVPEQGNTLIAADYSQIELRIMAHLSK 682
Query: 888 CKSMLDAFKAGGDFHSRTAMNMY 910
K++L+AF D HS TA ++
Sbjct: 683 DKNLLNAFTNNIDVHSSTAAEVF 705
>gi|334318202|ref|YP_004550821.1| DNA polymerase I [Sinorhizobium meliloti AK83]
gi|418402693|ref|ZP_12976200.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
gi|334097196|gb|AEG55207.1| DNA polymerase I [Sinorhizobium meliloti AK83]
gi|359503350|gb|EHK75905.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
Length = 1004
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 823 RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH C T TGRLS+ PNLQN P + KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726 RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 786 LAHVADIPQLRQAFADGVDIHAMTASEMF 814
>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
Length = 921
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
E+ A E S + E + L S + L G V+ + GRVH S + + +TGRLS+
Sbjct: 606 ERLAAEGEAIASKILEWRQLSKLKSTYSDALIG-KVNPETGRVHTSFSLVGAQTGRLSST 664
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P + +IR AFIA G+ L+ ADY Q+ELR+ AH+A+ K++L AF+ D
Sbjct: 665 DPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKED 724
Query: 901 FHSRTAMNMYPHI 913
H+ TA ++ H+
Sbjct: 725 IHALTAKQLFGHV 737
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 130/360 (36%), Gaps = 105/360 (29%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE--- 427
A DTE +D Q +++ S+ + EA GK+C GG DLL++
Sbjct: 342 AVDTETDNLDATQ------AQLVGVSLST--EA----GKACYIP--CGHGGHDLLDQKPD 387
Query: 428 ----------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
P EDPSI K+ N +D VL YG+ V F DTM ++ D+ R
Sbjct: 388 QMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQPFD-DTMLLSYDLDAGRH 446
Query: 478 TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGK 537
G L L D + IS K + G G +
Sbjct: 447 GHGMDELSLLYFDHQ------------------------PISFKSVCG------TGKSAI 476
Query: 538 ISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDF 597
P+ R Y+A D+ T +L+ LK +L DG
Sbjct: 477 TFNHVPIPAATR--------YAAEDADITFRLWALLKPRL-----SSDGAT-------RI 516
Query: 598 YQEYWQPFGEILVKMETEGMLVDREYLSEIEK-----VARAEQEAAVNRFRKWASKHCPD 652
Y+E +P ++ +ME G+ VD L + ++R E+E V
Sbjct: 517 YEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYV----------LAG 566
Query: 653 AKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
+++ + S QL ++LFG G SK S V E + AEG+ SK
Sbjct: 567 CRFL-ISSPKQLGEVLFGTMGLAGGKKSKSGQYST------NVTELERLAAEGEAIASKI 619
>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
Length = 965
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G +I ADY
Sbjct: 686 VNRKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIARKGFKVIAADYS 745
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K + AF G D H TA ++
Sbjct: 746 QIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIF 780
>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVF 742
>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K+GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKSGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|406914615|gb|EKD53778.1| hypothetical protein ACD_60C00155G0005 [uncultured bacterium]
Length = 897
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 795 LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
+ E ++ L++ + LP Q ++ GRVH S N TGRLS+ PNLQN P
Sbjct: 595 IIEYRALSKLMTTYTKRLPEQ---INAHTGRVHTSYNQYGAATGRLSSSDPNLQNIPVRT 651
Query: 852 KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
++ +IRQAFIA G+ LI ADY Q+ELRI+AH+++ ++L+AF D H TA
Sbjct: 652 EEGRRIRQAFIAPKGHQLISADYSQIELRIMAHISSDPALLNAFAENLDIHKATA 706
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L + P E+P+IKK+ HN +D VL N+G+ + G DT+ + + +S
Sbjct: 370 LKKLKPILENPNIKKIGHNIKYDMEVLANHGIHLQGIAYDTLLESHILES 419
>gi|365920203|ref|ZP_09444552.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
gi|364578420|gb|EHM55625.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
Length = 900
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S + T TGRLS+ PNLQN PA + +IRQAFIA G ++ ADY
Sbjct: 621 VNPQTGRIHTSYHQAVTSTGRLSSSDPNLQNIPARSDEGRRIRQAFIAADGMQILAADYS 680
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELRI+AHL+ +L AF G D H TA ++ +AV Q
Sbjct: 681 QIELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPDAVSREQ 726
>gi|385786657|ref|YP_005817766.1| DNA polymerase I [Erwinia sp. Ejp617]
gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
Length = 929
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ +GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G+
Sbjct: 644 LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHR 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF + D H TA ++
Sbjct: 701 IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF 742
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
D+L P EDP +KV N FD VL+ Y +++ G DTM
Sbjct: 400 DVLARLKPLLEDPQAQKVGQNLKFDRGVLKRYDIELQGIRFDTM 443
>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Xenorhabdus nematophila ATCC 19061]
Length = 930
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ RVH S + T TGRLS+R PNLQN P ++ +IRQAFIA G ++ ADY
Sbjct: 650 VNPLTNRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYS 709
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 710 QIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVF 744
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 71/318 (22%)
Query: 359 WMLTNKYKHL-VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
W+ K KH + DTE +D V + F+I +G E++ + D L
Sbjct: 340 WI--EKLKHAPAFSFDTETDGLDTLTANLVG----MSFAIAAG-ESEVEAAYLPLAHDYL 392
Query: 418 DGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
D + ++L P ED ++ K+ N FD VL Y + + G DTM +
Sbjct: 393 DAPQQLDLHEVLTALKPLLEDANLPKIGQNLKFDRGVLARYDVVLEGIVFDTMLES---- 448
Query: 474 SSRRTEGGYSLEALTG--DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
Y L ++ G D ++E +Y K T E GK G+++L
Sbjct: 449 --------YVLNSVAGRHDMDSLAERHLSY-----KTTTFEDIAGK-------GKKQLTF 488
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
+ P+EE + Y+A D+ TL+L++++ +L
Sbjct: 489 NQ--------IPLEEAAK--------YAAEDADVTLRLHQAMYPQL-----------ASA 521
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
+ + +Q+ P +L +ME G+L+D L+E +E V S +
Sbjct: 522 EVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAE------HSREITVRLDELEKSAYAL 575
Query: 652 DAKYMNVGSDTQLRQLLF 669
+ N+ S QL+ +LF
Sbjct: 576 ADEEFNLASPKQLQVILF 593
>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum So ce56]
gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum So ce56]
Length = 900
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H TGRLS++ PNLQN P + IR+AF+A PG+ ++ ADY Q+EL
Sbjct: 627 TGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIEL 686
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAHL+ ++DAF+ G D H RTAM ++
Sbjct: 687 RVLAHLSKDPVLVDAFRTGQDVHVRTAMEIF 717
>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
Length = 938
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 783 QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
+E R + + E + L S ++ LP Q V+ + GRVH N + TGRL++
Sbjct: 621 EELRGRHPVLDLILENRELSKLKSTYVDALPQQ---VNPRTGRVHTRFNQTGSVTGRLAS 677
Query: 840 RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
PNLQN P ++R AFIA G L+ DY Q+ELRI+AH+AN ++ML AF+AG
Sbjct: 678 SDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLAAFRAGQ 737
Query: 900 DFHSRTAMNMY 910
D H+ TA +Y
Sbjct: 738 DIHAATAAAIY 748
>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 923
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALLDAFCHGKDIHAATA 732
>gi|453065753|gb|EMF06713.1| DNA polymerase I [Serratia marcescens VGH107]
Length = 932
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL + VSG RVH S + T TGRLS+ PNLQN P ++ +IRQAFIA G
Sbjct: 647 LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ + +L AF G D H TA ++
Sbjct: 704 IVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATASEVF 745
>gi|358410693|gb|AEU10079.1| DNA polymerase I [Photobacterium damselae subsp. piscicida]
Length = 923
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ GRVH S + T TGRLS+ PNLQN P + +IRQAFIA G ++ DY
Sbjct: 642 VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
Q+ELRI+AHL+ K++LDAF G D H+ TA
Sbjct: 702 QIELRIMAHLSGDKALLDAFCHGKDIHAATA 732
>gi|386018775|ref|YP_005936799.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
Length = 914
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 693 SQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVF 728
>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
Length = 915
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
+S K GRVH S + TGRLS+ PNLQN P ++ IR AFIA G+ ++ ADY
Sbjct: 636 ISDKTGRVHTSYHQAIAATGRLSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYS 695
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +L AF+ G D HS TA ++
Sbjct: 696 QIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVF 730
>gi|427430986|ref|ZP_18920682.1| DNA polymerase I [Caenispirillum salinarum AK4]
gi|425878163|gb|EKV26882.1| DNA polymerase I [Caenispirillum salinarum AK4]
Length = 941
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 770 GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
GA +++ I EQ A + D + + + + L S + L + + + GRVH + +
Sbjct: 617 GAYSTSADIL--EQLAAQGHDLPARVLDWRQVQKLKSTYADSLV-NQIRARTGRVHTNYS 673
Query: 830 -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
T TGRLS++ PNLQN P ++ KIR+AF+A G LI ADY Q+ELR++AH+A+
Sbjct: 674 QTATSTGRLSSQEPNLQNIPIRTEEGRKIRRAFVAEQGCKLISADYSQIELRLVAHVADI 733
Query: 889 KSMLDAFKAGGDFHSRTAMNMY 910
++ +AF+ G D H+ TA ++
Sbjct: 734 AALKEAFREGQDIHAITASQVF 755
>gi|421885454|ref|ZP_16316650.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379985061|emb|CCF88923.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRTTAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG-6]
gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
Length = 951
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH + N + TGRLS+ PNLQN P ++ +IR+ F+A PG+ I ADY
Sbjct: 662 VNPRTGRVHTTYNQVGAATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYS 721
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LA++ +++ AF+ G D H+ TA ++
Sbjct: 722 QIELRVLAYITKDPNLVRAFQEGQDIHAATAAQLF 756
>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
Length = 1047
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
E+ A+ D + + L S + LQ G N RVH S + T TGRLS+
Sbjct: 729 EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A G LI ADY Q+ELR+LAH+A+ + +AF+ G D
Sbjct: 788 DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 848 IHAATASAMF 857
>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
Length = 1040
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH + T TGRLS+ PNLQN P + +IR AFIA PG+ L+ ADY Q+ELR+
Sbjct: 762 RVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYSQIELRV 821
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A+ + AF G D H+ TA M+
Sbjct: 822 LAHVADIPQLRQAFADGVDIHAMTASEMF 850
>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
Length = 939
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 10/106 (9%)
Query: 809 ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPG 866
+LPL + G++GR+H S N T TGRLS+ PNLQN P LE+ R +IR+AF A PG
Sbjct: 651 LLPL----IDGEDGRIHTSFNQAVTATGRLSSTEPNLQNIPVRLEQGR-RIRKAFTA-PG 704
Query: 867 N--SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+ +L+ ADY Q+ELRILAHL+ S DAF D H+RTA ++
Sbjct: 705 DDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTASEVF 750
>gi|375121444|ref|ZP_09766611.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
Length = 884
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 600 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 655
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 656 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 698
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 282 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 333
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 334 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 391
Query: 459 SGFHADTM 466
G DTM
Sbjct: 392 RGIAFDTM 399
>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
Length = 893
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GR+ + N T TGRLS+ PNLQN P ++ KIR+AF A G LI ADY Q+EL
Sbjct: 617 DGRIRSTFKQNVTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADDGKVLIDADYSQIEL 676
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAHLAN K M +AF D H++TA ++
Sbjct: 677 RVLAHLANDKKMQEAFSKDIDIHTKTASEVF 707
>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|392553088|ref|ZP_10300225.1| DNA polymerase I [Pseudoalteromonas spongiae UST010723-006]
Length = 912
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S + T TGRLS+ PNLQN P + +IRQAF+A PG ++ ADY Q+ELRI
Sbjct: 637 RVHTSYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFVAAPGKLIMAADYSQIELRI 696
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+AHL+ +L AF G D HS TA ++
Sbjct: 697 MAHLSQDNGLLSAFAEGKDVHSATAAEVF 725
>gi|419741491|ref|ZP_14268182.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381291376|gb|EIC32621.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
Length = 886
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|339492245|ref|YP_004712538.1| DNA polymerase I [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338799617|gb|AEJ03449.1| DNA polymerase I [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 914
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 693 SQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVF 728
>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 870
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTMHMARLWDS 474
G DTM + + +S
Sbjct: 436 RGIAFDTMLESYILNS 451
>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
Length = 931
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 650 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 709
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 710 SQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVF 745
>gi|440730656|ref|ZP_20910734.1| DNA polymerase I [Xanthomonas translucens DAR61454]
gi|440378040|gb|ELQ14673.1| DNA polymerase I [Xanthomonas translucens DAR61454]
Length = 922
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + TGRLS+ PNLQN P D +IR+AF+A PG LI DY
Sbjct: 642 INPDTGRVHTSYHQAGAATGRLSSADPNLQNIPIRTDDGRRIRRAFVAPPGRKLIACDYS 701
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ +L AF AG D H TA ++
Sbjct: 702 QIELRIMAHLSEDSGLLRAFGAGVDVHRATAAEVF 736
>gi|437821830|ref|ZP_20843409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435306761|gb|ELO82004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|416505717|ref|ZP_11734092.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416517832|ref|ZP_11739630.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416529100|ref|ZP_11744127.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416537560|ref|ZP_11749000.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416548395|ref|ZP_11754789.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416560544|ref|ZP_11761263.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|452122227|ref|YP_007472475.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|363552795|gb|EHL37074.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363555982|gb|EHL40202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363559635|gb|EHL43792.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363563259|gb|EHL47338.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363570982|gb|EHL54900.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363574649|gb|EHL58512.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|451911231|gb|AGF83037.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|418058623|ref|ZP_12696593.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
gi|373567862|gb|EHP93821.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
Length = 1047
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
E+ A+ D + + L S + LQ G N RVH S + T TGRLS+
Sbjct: 729 EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A G LI ADY Q+ELR+LAH+A+ + +AF+ G D
Sbjct: 788 DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 848 IHAATASAMF 857
>gi|421615320|ref|ZP_16056346.1| DNA polymerase I [Pseudomonas stutzeri KOS6]
gi|409782708|gb|EKN62259.1| DNA polymerase I [Pseudomonas stutzeri KOS6]
Length = 914
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 693 SQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVF 728
>gi|419240114|ref|ZP_13782818.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9C]
gi|378079926|gb|EHW41894.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9C]
Length = 705
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA
Sbjct: 421 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV 477
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 478 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 519
>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 772
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 488 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 543
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 544 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 586
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 170 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 221
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 222 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 279
Query: 459 SGFHADTM 466
G DTM
Sbjct: 280 RGIAFDTM 287
>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|409247671|ref|YP_006888366.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|402701342|ref|ZP_10849321.1| DNA polymerase I [Pseudomonas fragi A22]
Length = 921
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 640 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADY 699
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLE 925
Q+ELRI+AHLA + +L AF+ D HS TA ++ VE G V ++
Sbjct: 700 SQIELRIMAHLAKDEGLLHAFRNNLDVHSATAAEVF-----GVELGDVTVD 745
>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium extorquens CM4]
gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium extorquens CM4]
Length = 1047
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 782 EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
E+ A+ D + + L S + LQ G N RVH S + T TGRLS+
Sbjct: 729 EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787
Query: 841 RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
PNLQN P ++ +IR+AF+A G LI ADY Q+ELR+LAH+A+ + +AF+ G D
Sbjct: 788 DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847
Query: 901 FHSRTAMNMY 910
H+ TA M+
Sbjct: 848 IHAATASAMF 857
>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|374979492|ref|ZP_09720827.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375116809|ref|ZP_09761979.1| putative acyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|378447337|ref|YP_005234969.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378452903|ref|YP_005240263.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378701859|ref|YP_005183817.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378986684|ref|YP_005249840.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378991281|ref|YP_005254445.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379703242|ref|YP_005244970.1| putative xanthine/uracil permeases family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|383498601|ref|YP_005399290.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386589358|ref|YP_006085758.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|418807167|ref|ZP_13362731.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418811329|ref|ZP_13366860.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418818564|ref|ZP_13374034.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821527|ref|ZP_13376951.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418827433|ref|ZP_13382581.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|418831377|ref|ZP_13386331.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418838369|ref|ZP_13393217.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418840885|ref|ZP_13395710.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418849367|ref|ZP_13404099.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854754|ref|ZP_13409419.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|418861287|ref|ZP_13415851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418865840|ref|ZP_13420310.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418870447|ref|ZP_13424864.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|419728715|ref|ZP_14255679.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733490|ref|ZP_14260387.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419743169|ref|ZP_14269835.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419749259|ref|ZP_14275743.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421569881|ref|ZP_16015579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421575614|ref|ZP_16021226.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578860|ref|ZP_16024432.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421583567|ref|ZP_16029088.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422028236|ref|ZP_16374548.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422033287|ref|ZP_16379365.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427556588|ref|ZP_18929871.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427574509|ref|ZP_18934462.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427595813|ref|ZP_18939377.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427620388|ref|ZP_18944258.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427644110|ref|ZP_18949146.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427658256|ref|ZP_18953870.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427663513|ref|ZP_18958772.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427680610|ref|ZP_18963663.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427801576|ref|ZP_18969121.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|20141441|sp|Q9F173.2|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
exonuclease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|380465422|gb|AFD60825.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381298836|gb|EIC39911.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381299931|gb|EIC40998.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381311661|gb|EIC52473.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|381312256|gb|EIC53060.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|383796402|gb|AFH43484.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392779092|gb|EJA35762.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392780155|gb|EJA36811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392784747|gb|EJA41329.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392790103|gb|EJA46604.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392796405|gb|EJA52742.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392799476|gb|EJA55733.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392799730|gb|EJA55983.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392810025|gb|EJA66052.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392821214|gb|EJA77041.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823291|gb|EJA79088.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|392824930|gb|EJA80693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392826915|gb|EJA82634.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|392830535|gb|EJA86183.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|402522064|gb|EJW29395.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402523802|gb|EJW31113.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402526161|gb|EJW33439.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402532057|gb|EJW39257.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414011985|gb|EKS95918.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414013209|gb|EKS97096.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414013456|gb|EKS97341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414027139|gb|EKT10383.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414028032|gb|EKT11233.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414030485|gb|EKT13583.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414041506|gb|EKT24076.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414041873|gb|EKT24425.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414046653|gb|EKT28970.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414055423|gb|EKT37316.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414061619|gb|EKT43007.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
Length = 928
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>gi|392423186|ref|YP_006459790.1| DNA polymerase I [Pseudomonas stutzeri CCUG 29243]
gi|390985374|gb|AFM35367.1| DNA polymerase I [Pseudomonas stutzeri CCUG 29243]
Length = 914
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + T TGRLS+ PNLQN P + +IRQAF+A PG L+ ADY
Sbjct: 633 QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADY 692
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +L AF+ D H TA ++
Sbjct: 693 SQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVF 728
>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
Length = 978
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
++ GRVH S + +T TGR S+ PNLQN P + KIR AFIA G+ L+ ADY
Sbjct: 694 INKTTGRVHTSYAMASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYS 753
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELR+LAH+A+ + AF G D H+ TA M+
Sbjct: 754 QIELRVLAHMADISQLKQAFADGIDIHAMTASEMF 788
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 104/387 (26%)
Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC----------------IWV 414
A DTE +D +++ S+ +GP G++C ++
Sbjct: 388 AVDTETTSLDAMA------CDLVGVSLATGP------GRACYIPLAHLKDGSSDDGDMFS 435
Query: 415 DLLDGGGRDLLNEFA---PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
+ LD DL A P E PS+ K+ N +D VL YG++V F DTM ++ +
Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRYGIEVGPFD-DTMLLSYV 494
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
D+ R G + ++AL S + D I K++ G K
Sbjct: 495 LDAGR---GKHGMDAL------------------SLAHLDHT---PIPFKEVAGSGK--- 527
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
++ +++ E+ +Y+A D+ TL+L+ LK +L+
Sbjct: 528 --------SMVTFDKVSIEKAS---AYAAEDADVTLRLWTLLKARLV------------A 564
Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
+ M Y+ +P +L +ME G+ +DR+ LS + A++ A + A H
Sbjct: 565 EKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRLSG-ELAQKAAGIE-----ADIHEM 618
Query: 652 DAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK 706
+ +N+ S QL +LLFG G +K + + + E + AEG + P +
Sbjct: 619 AGEPINIASPKQLGELLFGKMELPGGKKTKTGQWATGAQAL------EDLAAEGHELPRR 672
Query: 707 ---FRNIT-LRSIGVD-LPTEMYTATG 728
+R +T L+S D LPT + TG
Sbjct: 673 IVDWRQLTKLKSTYTDALPTFINKTTG 699
>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
12042]
gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
12042]
Length = 900
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
+GR+H N T+TGRLS+ PNLQN +++ ++R+AF+ GN L+ +DY Q+EL
Sbjct: 624 DGRIHTIYNQCATQTGRLSSTEPNLQNISVRDEESREVRKAFLPSEGNVLVASDYSQIEL 683
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
R+LAH+A+ + +LDAF+ D H++TA +++
Sbjct: 684 RMLAHMADEQGLLDAFRHAVDIHTKTASDVF 714
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
K+ ++ H+ + GL ++G D M A L DS+ LT D+K+ +
Sbjct: 399 KIVYDVKACLHLADGAGLTINGMKIDAMIAAFLCDST-----------LTSDQKIREK-- 445
Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
G ++M +++G+ GK+ P +LQR+
Sbjct: 446 -------------FGLTETVTMDEVYGK--------PGKMKL--PEPQLQRQ-------- 474
Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKP-VPGKSMFDFYQEYWQPFGEILVKMETEGM 617
+ K +L++ WK D +P + + + + P +L KME EG+
Sbjct: 475 -----------LCAQKIQLIDALWK-DSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGI 522
Query: 618 LVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNS 675
+D + L +I + +A +A + A + N+ S QL ++LF G P S
Sbjct: 523 RIDSQTLDDIARQTQARLDALTDAIYAAAGET------FNINSPKQLGEVLFDKLGLPAS 576
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,966,317,174
Number of Sequences: 23463169
Number of extensions: 643885523
Number of successful extensions: 1258978
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5071
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 1245424
Number of HSP's gapped (non-prelim): 10937
length of query: 940
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 788
effective length of database: 8,792,793,679
effective search space: 6928721419052
effective search space used: 6928721419052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)