BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002293
(940 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LAH+A + AF+ G D H+ TA M+
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 824
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + +I PL + V K GR+H N T TGRLS
Sbjct: 516 AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPKTGRLHTRFNQTATATGRLS 574
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G L+V DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 575 SSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEG 634
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 635 RDIHTQTASWMFGVSPEGVDPLMRRAAKT 663
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L S +I PL + + GR+H N T TGRLS
Sbjct: 517 AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 575
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AFIA G L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 576 SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635
Query: 899 GDFHSRTAMNMYPHIRNAVE 918
D H+ TA M+ R AV+
Sbjct: 636 RDIHTETASWMFGVPREAVD 655
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Y Q+EL +LAHL+ +++L+AF+ D H+ TA ++
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ IRQAFIA G S++ ADY
Sbjct: 651 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHL+ + +++AF G D H TA ++
Sbjct: 711 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF 745
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ ++AAK
Sbjct: 297 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNAAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF----------------- 489
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 490 --------NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 /
DSM 635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S N + TGRLS+ PNLQN P ++ +IR+AF+A PG + ADY
Sbjct: 657 VNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
Q+ELR+LAH++ ++++ AF+ G D H+ TA ++ AV+ Q
Sbjct: 717 QIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQ 762
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 56/248 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
+++ APFF +P K HN FD VL G+KVSG DTM A
Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLAGAGIKVSGLAFDTMIAA------------- 452
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
A+ G R+ + +D Y+ + + T +++D+ GR K S ++
Sbjct: 453 ---AMLGKRQGL-KDLAFYELKLPEPPT--------TIEDLIGRG--NKQISFAEV---- 494
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
PVE+ Y+A D++ TL+L + L++ +L+ +P ++ D Y
Sbjct: 495 PVEQ--------AAPYAAADALYTLRLTERLQR-------QLEAEP----ALHDLYYRVE 535
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P E+L ME G+ +D+EYL E+ + V R + A N+ S
Sbjct: 536 LPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP------FNINSGQ 589
Query: 663 QLRQLLFG 670
QL +LFG
Sbjct: 590 QLNDVLFG 597
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMY--------PHIRNAVET 919
D H++TA M+ P +R A +T
Sbjct: 638 KDIHTQTASWMFGVPPEAVDPLMRRAAKT 666
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742
Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
L P ED KV N +D +L NYG+++ G DTM
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTM 443
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T Q A EA + E+ + L S ++ PL V + GR+H N T T
Sbjct: 513 STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P +IR+AF+A G L+ ADY Q+ELR+LAHL+ +++
Sbjct: 572 GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631
Query: 895 FKAGGDFHSRTAMNMY--------PHIRNAVET 919
F+ G D H+ TA M+ P +R A +T
Sbjct: 632 FREGKDIHTETAAWMFGLDPALVDPKMRRAAKT 664
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNL 844
R+A I + E +D L ++ P+ + V+ GR+H + TGRLS+ PNL
Sbjct: 648 RDAHPIIPLVLEFRELDKLRGTYLDPIP-NLVNPHTGRLHTTFAQTAVATGRLSSLNPNL 706
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P + +IR+ FIA G +LI ADY Q+ELR+LAH+A+ M AF G D H R
Sbjct: 707 QNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRR 766
Query: 905 TAMNM 909
TA +
Sbjct: 767 TAAQV 771
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
Q+ELRI+AHLA +LDAF+ D H TA ++
Sbjct: 692 SQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVF 727
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMY 910
D H+ TAM ++
Sbjct: 679 ADIHTSTAMRVF 690
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
G+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+E
Sbjct: 599 TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LR+LAH+A ++++AF+ G D H++TAM+++
Sbjct: 659 LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF 690
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMY 910
D H+ TAM ++
Sbjct: 679 ADIHTSTAMRVF 690
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIRQAFIA G
Sbjct: 590 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNKIRQAFIAEDGYK 646
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 647 LISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIF 688
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 640 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 696
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 697 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF 738
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 639 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 695
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 696 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF 737
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLK-VSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
D SIKK+ Y LK + F+A+ H + + Y+L A
Sbjct: 380 LLADKSIKKI------------TYSLKPLLKFYANQSHEITAIEDLELMQ--YALSAGLS 425
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
+ + E K + +SK E F G + + + +++D S G S + P+E ++
Sbjct: 426 QKNLFEEALKEDNRPLSKLAYREEFKGD-TERSTAAYKSVREDASTGSTSKL-PLE-VEF 482
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
+R + I+ SA N + LYK + +LE+ D K F Y + P IL
Sbjct: 483 GKRPIVINESARIVANFISLYK---QNILELK---DNKA------FRLYSDIDLPICFIL 530
Query: 610 VKMETEGMLVDREYLSEIE-----KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
KME G+ VD YL ++ ++ + E+E F +K N+GS QL
Sbjct: 531 DKMEKVGIKVDANYLKQLSTEFGAEILKLEEEI----FALSGTK-------FNIGSLKQL 579
Query: 665 RQLLF 669
++LF
Sbjct: 580 GEILF 584
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIR+AFIA G
Sbjct: 585 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEGYK 641
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 642 LISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIF 683
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ R+H + + T GRLS++ PNLQN P + KIRQAF+A G
Sbjct: 589 LPKQIDNITR---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNKIRQAFVAEQGYK 645
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+A+ K++ AF D H++TA ++
Sbjct: 646 LISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIF 687
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR
Sbjct: 602 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 661
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+LAH+A ++++AF+ D H++TAM+++
Sbjct: 662 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF 691
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 812 LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
LQ N S GRVH + + T TGRL++ PNLQN P + IR+ F+ G+ LI
Sbjct: 567 LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
ADY Q+ELRILAH++ + ++ AFK D HS+TA ++
Sbjct: 625 DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF 664
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETG 835
K+ + +E E+ + + ++ + S ++ ++ L ++ K R+H S + T TG
Sbjct: 592 KVLESLREQHESIENLIKYRQIAKLKSTYTDNLIEL----INYKTNRLHTSFIQTKTATG 647
Query: 836 RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
R+++ PNLQN P ++ KIR+AF GN I ADY Q+EL ILAHL+ + ++ AF
Sbjct: 648 RITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAF 707
Query: 896 KAGGDFHSRTAMNMY 910
+ D H+ TA ++
Sbjct: 708 ENNKDIHTETASKLF 722
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 424 LLNEFAPFFE-DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++ +F FE +P I + NY FD +L+N G + DTM A L D++ + +
Sbjct: 389 IIQKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPPYFDTMIAAYLIDTNSKVSLDF 446
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
E + + ED ++K+ + IS
Sbjct: 447 LAEKYLMHKNIKYEDV------------------------------IQKNDNFANISL-- 474
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E+ SYS+ D+ T +L+ KKL E E
Sbjct: 475 ----------EMATSYSSEDADITFRLFNIFTKKLKEDKLDKL------------MHEIE 512
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
PF +++++ME G+ +D+EYL E K E EA N K N+ S
Sbjct: 513 MPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIKSIGID------FNLNSPK 566
Query: 663 QLRQLLF 669
Q+ ++LF
Sbjct: 567 QMHEILF 573
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
+ D + L + I I + I LQ + + G + +VH N T+TGRL
Sbjct: 561 SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
S+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR+LAH++ +++++AF
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680
Query: 897 AGGDFHSRTAMNMYPHIRNAV 917
D H++TAM+++ ++ V
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEV 701
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMY 910
G D H+ TAM ++
Sbjct: 677 EGADIHTSTAMRVF 690
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMY 910
G D H+ TAM ++
Sbjct: 677 EGADIHTSTAMRVF 690
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + +IR+AFIA G
Sbjct: 593 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRKAFIAEEGYK 649
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 650 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF 691
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+RI+AHL+ + +++AF G D HS A +
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF 717
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+RI+AHL+ + +++AF G D HS A +
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF 717
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 816 NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS----LI 870
N +GR+H + N TGRLS+ PNLQN P +IR AF+ N+ L+
Sbjct: 625 NAVAADGRIHTTFNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELM 684
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
ADY Q+E+RI+AHL+ + +++AF G D HS A
Sbjct: 685 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVA 720
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=polA PE=3 SV=2
Length = 891
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I+ + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 589 SIALILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 646
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 647 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 706
Query: 909 MY 910
++
Sbjct: 707 LF 708
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 595 SIPLILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 652
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 653 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 712
Query: 909 MY 910
++
Sbjct: 713 LF 714
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 792 ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
I A+ E ++ L S ++ LP V+G+ R+H N T TGRLS+ PNLQN P
Sbjct: 668 IDAILEHRTLAKLKSTYVDALP---ELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIP 724
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+IR+AF+ L+ ADY Q+ELRILAHL+ +L A+ D H TA
Sbjct: 725 IRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKL 784
Query: 909 MY 910
++
Sbjct: 785 LF 786
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 15/139 (10%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG V++++K + Q+ + + + E+ + + L+ KNGRV+
Sbjct: 262 KGNVSTDDKALTSYQD----VEPVKLVLEIRKLKKIADK----LKELKEHLKNGRVYPEF 313
Query: 829 -NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
I TGR+S+ PN+QN + +D +R F A GN+ +++D+ Q+ELRI A
Sbjct: 314 KQIGAVTGRMSSAHPNIQN---IHRD---MRGIFKAEEGNTFVISDFSQIELRIAAEYVK 367
Query: 888 CKSMLDAFKAGGDFHSRTA 906
MLDAFK G D H TA
Sbjct: 368 DPLMLDAFKKGKDMHRYTA 386
>sp|P30314|DPOL_BPSP1 DNA polymerase OS=Bacillus phage SP01 GN=31 PE=3 SV=2
Length = 924
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQ--- 845
D + L E + L +NF+ L S + + VH S NI+ T TGRLS+ PN Q
Sbjct: 545 DFVKVLMEFRKANHLYNNFVSKL--SLMIDPDNIVHPSYNIHGTVTGRLSSNEPNAQQFP 602
Query: 846 ---NQPALEKDRYKIRQAFIAVPGNSLIVA--DYGQLELRILAHLANCKSMLDAFKAGGD 900
N P L + ++I++ F + G+ ++ DY QLELRIL + +D +++G D
Sbjct: 603 RKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGAD 662
Query: 901 FHSRTAMNMY 910
H A + +
Sbjct: 663 LHKAVASDAF 672
>sp|O64235|DPOL_BPMD2 DNA polymerase OS=Mycobacterium phage D29 GN=44 PE=3 SV=1
Length = 607
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q PA + + +R+ F+A PG+ + DY ELR+
Sbjct: 347 RCHTFVNPLQARTSRMSITGIPAQTLPASD---WTVRRCFLADPGHVMASIDYQAQELRV 403
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTA 906
LA L+ ++M+ AFK G D H TA
Sbjct: 404 LAALSGDRTMIQAFKDGADLHLMTA 428
>sp|Q05254|DPOL_BPML5 DNA polymerase OS=Mycobacterium phage L5 GN=44 PE=3 SV=1
Length = 595
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q P+ + + +R+ FIA PG+ + DY ELR+
Sbjct: 343 RCHTFINPLQARTSRMSITGIPAQTLPSSD---WIVRRCFIAEPGDVMASVDYQAQELRV 399
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTA 906
LA L+ ++M++AF+ G D H TA
Sbjct: 400 LAALSGDRNMIEAFENGADLHQMTA 424
Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 52/219 (23%)
Query: 431 FFEDPSI------KKVWHNYSFDNHVLEN-YGLKVSGFH---ADTMHMARLWDSSRRTEG 480
F ED I + V N SFD VL+ +G+++ G DT +A+L D G
Sbjct: 78 FIEDVRIAIGALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAG 137
Query: 481 GY--SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
G+ SLE L K +SED+ K + M K++ + K A
Sbjct: 138 GFGHSLEELIA--KFISEDQAENVKKL---------MAKLAAE--------HKTTKAKIW 178
Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
STI +L E ++ Y+ D+I T ++ KSL + ++S L VP
Sbjct: 179 STI----DLFHPE---YLLYAGMDTIFTARVCKSLTPLVPDVSRSL----VP-------- 219
Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEA 637
Y EI ++ +G L+D EY + + A+QE
Sbjct: 220 --YEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEV 256
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
+R AF+ PG S++ ADY QLELRILAHL++ + ++ G D A
Sbjct: 2314 MRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2363
>sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2
Length = 864
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 16/93 (17%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQ-------------NQPALEKDRYKI--RQAFIA 863
K G + + N T TGRLSA+ PN+Q N E++ I R F++
Sbjct: 553 KKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVS 612
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
G++ + AD+ Q+ELRILAHL+ +L F+
Sbjct: 613 SEGHTFLAADFSQIELRILAHLSGDPELLKLFQ 645
>sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2
Length = 900
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 22/96 (22%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKI------------------RQA 860
K G + + N T TGRLSA+ PN+Q + K +I R
Sbjct: 554 KKGSISSTWNQTGTVTGRLSAKHPNIQ---GISKHPIQITTPKNFKGKEDKILTISPRAM 610
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
F++ G++ + AD+ Q+ELRIL HL+ +L F+
Sbjct: 611 FVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQ 646
>sp|P06225|DPOL_BPSP2 DNA polymerase OS=Bacillus phage SP02 GN=L PE=3 SV=1
Length = 648
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
+R AFI GN V+D+ +E R++A LA + L+ F G + +A M+
Sbjct: 370 VRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIYEASAAQMF 423
>sp|Q8VZD5|KSG5_ARATH Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana
GN=ASK5 PE=2 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 205 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTTIDIWSA 261
Query: 420 G 420
G
Sbjct: 262 G 262
>sp|Q40518|MSK1_TOBAC Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDIWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|P43289|KSG3_ARATH Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa OS=Arabidopsis thaliana
GN=ASK10 PE=2 SV=2
Length = 421
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H + CD AK+ VK E V + IC Y PE FG + +D+
Sbjct: 214 LLVNPHTHQLKICDFGSAKVLVKGEPNVSY---ICSRYYRAPELIFGASEYTTAIDIWST 270
Query: 420 G 420
G
Sbjct: 271 G 271
>sp|P43288|KSG1_ARATH Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1
PE=2 SV=3
Length = 405
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 200 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 256
Query: 420 G 420
G
Sbjct: 257 G 257
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI-------LVKME--- 613
++TL Y+ KK+ +S KPVP K ++D Y+ + F + + K+E
Sbjct: 43 VDTLSNYQDECKKIKSVS-----KPVPSKELYDLYETAYVYFKIVSLIVLNKIPKLEEYA 97
Query: 614 -TEGMLVDRE-------YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD---- 661
+ VDR Y + ++ + ++ A + RF K S+ P+AK +G +
Sbjct: 98 RAKSDAVDRTGKQLLEIYNMLVNRLVKDDRIAEIKRFVKENSRRDPEAKNEQIGVESGKS 157
Query: 662 ---TQLRQLLFG 670
T LR LL G
Sbjct: 158 IPATLLRNLLMG 169
>sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3 OS=Homo sapiens GN=PKD1L3
PE=2 SV=1
Length = 1732
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%)
Query: 141 KRAAISTVINILESKHNRSLTSSKTECLQDSSFYSPIMSSKPHFFQKFEQQKKPIFKGLA 200
K A S +I+I+ S S + + + YS +MS P ++ EQQ K I LA
Sbjct: 1181 KDQATSWMISIILSVLQNIFISQPVKVVFFTFLYSLMMSRMPRLNKENEQQTKRILALLA 1240
Query: 201 DLRNGAVGGHPKNHPGSVMAVTKQVTGSEEKS 232
+ G KN+P V T E++
Sbjct: 1241 KCSSSVPGSRDKNNPVYVAPAINSPTKHPERT 1272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,003,878
Number of Sequences: 539616
Number of extensions: 15613127
Number of successful extensions: 31012
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 30904
Number of HSP's gapped (non-prelim): 111
length of query: 940
length of database: 191,569,459
effective HSP length: 127
effective length of query: 813
effective length of database: 123,038,227
effective search space: 100030078551
effective search space used: 100030078551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)