Query 002293
Match_columns 940
No_of_seqs 262 out of 1926
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfn_A Klenow fragment of DNA 100.0 1.7E-78 5.9E-83 714.1 39.7 416 342-920 4-429 (605)
2 3pv8_A DNA polymerase I; DNA p 100.0 6.4E-76 2.2E-80 689.4 37.3 383 369-919 31-415 (592)
3 4dfk_A DNA polymerase I, therm 100.0 2.4E-71 8.1E-76 644.7 31.4 350 368-919 11-364 (540)
4 1x9m_A DNA polymerase; DNA plo 100.0 4.1E-67 1.4E-71 626.2 29.3 412 369-914 1-511 (698)
5 1bgx_T TAQ DNA polymerase; DNA 100.0 3.3E-66 1.1E-70 626.7 21.6 359 368-934 305-666 (832)
6 1yt3_A Ribonuclease D, RNAse D 99.8 4.2E-19 1.4E-23 198.0 18.9 191 344-612 2-194 (375)
7 3saf_A Exosome component 10; e 99.8 1.3E-18 4.4E-23 197.7 17.2 172 344-581 109-281 (428)
8 2hbj_A Exosome complex exonucl 99.8 1.1E-17 3.9E-22 189.1 19.2 171 344-580 86-257 (410)
9 2e6m_A Werner syndrome ATP-dep 99.8 7.1E-18 2.4E-22 172.6 14.8 182 337-580 9-198 (208)
10 3ikm_A DNA polymerase subunit 99.7 7.2E-18 2.5E-22 203.7 0.9 94 820-915 769-877 (1172)
11 3cym_A Uncharacterized protein 99.5 3.2E-14 1.1E-18 162.4 14.6 176 336-580 12-190 (440)
12 1vk0_A Hypothetical protein; h 99.4 7.1E-13 2.4E-17 137.3 11.3 172 346-575 22-205 (206)
13 3v9w_A Ribonuclease T; DEDD nu 98.9 5E-09 1.7E-13 109.1 11.7 164 347-580 20-224 (235)
14 2p1j_A POLIII, DNA polymerase 98.3 2E-06 6.9E-11 86.5 11.4 110 368-490 13-147 (186)
15 2gui_A DNA polymerase III epsi 98.3 6.1E-06 2.1E-10 83.1 13.7 111 368-490 10-154 (194)
16 3mxm_B Three prime repair exon 98.2 6E-06 2E-10 87.0 11.2 120 368-490 13-185 (242)
17 1y97_A Three prime repair exon 98.1 6.9E-06 2.4E-10 85.3 10.2 65 423-490 98-180 (238)
18 2f96_A Ribonuclease T; RNAse, 98.1 1.2E-05 4.1E-10 83.1 11.7 112 368-490 30-182 (224)
19 3u3y_B Three prime repair exon 98.0 2E-05 6.7E-10 86.5 11.3 120 368-490 13-185 (314)
20 1wlj_A Interferon stimulated g 97.8 9.6E-05 3.3E-09 74.5 11.3 63 421-490 70-136 (189)
21 3tr8_A Oligoribonuclease; tran 97.8 2.4E-05 8.3E-10 79.7 6.5 103 368-475 10-150 (186)
22 1w0h_A 3'-5' exonuclease ERI1; 97.7 8.4E-05 2.9E-09 75.1 9.8 116 368-490 11-165 (204)
23 2qxf_A Exodeoxyribonuclease I; 97.7 0.00018 6.1E-09 83.2 13.1 118 368-490 10-172 (482)
24 1zbh_A 3'-5' exonuclease ERI1; 97.5 0.00058 2E-08 74.0 12.0 116 368-490 79-233 (299)
25 2igi_A Oligoribonuclease; RNAs 97.5 0.00022 7.4E-09 70.9 7.9 102 368-474 6-145 (180)
26 2xri_A ERI1 exoribonuclease 3; 97.0 0.0016 5.5E-08 67.3 9.1 110 368-490 32-184 (224)
27 1zbu_A ERI-1 homolog, 3'-5' ex 97.0 0.0013 4.5E-08 73.0 8.8 116 368-490 129-283 (349)
28 2gbz_A Oligoribonuclease; ORN, 96.9 0.0017 5.7E-08 65.8 7.8 81 368-453 10-121 (194)
29 3cg7_A CRN-4, cell death-relat 96.8 0.0014 4.7E-08 71.5 6.9 117 368-490 20-179 (308)
30 4gmj_B CCR4-NOT transcription 94.2 1.4 4.9E-05 47.6 17.4 52 434-490 148-215 (285)
31 1noy_A Protein (DNA polymerase 93.6 1.1 3.7E-05 50.1 15.6 108 421-573 191-335 (388)
32 1qht_A Protein (DNA polymerase 93.5 0.76 2.6E-05 56.1 15.4 151 368-575 136-328 (775)
33 3ikm_A DNA polymerase subunit 92.4 0.21 7.2E-06 62.2 8.1 72 553-646 323-400 (1172)
34 3qex_A DNA polymerase, GP43; d 90.3 3.5 0.00012 51.1 15.9 107 421-572 194-337 (903)
35 1s5j_A DNA polymerase I; repli 87.4 12 0.00041 46.1 17.9 36 421-457 257-297 (847)
36 2d5r_A CCR4-NOT transcription 86.6 25 0.00087 37.3 17.5 53 433-490 137-205 (252)
37 2p51_A SPCC18.06C protein; DED 83.7 42 0.0014 37.1 18.0 53 433-490 158-226 (333)
38 3k59_A POL II, DNA polymerase 82.5 14 0.00049 45.1 15.2 66 421-490 204-302 (786)
39 3iay_A DNA polymerase delta ca 79.5 21 0.00072 44.4 15.4 111 421-573 313-465 (919)
40 2py5_A DNA polymerase; protein 57.8 10 0.00035 44.6 5.8 65 368-452 7-71 (575)
41 2gv9_A DNA polymerase; polymer 43.7 66 0.0023 41.2 10.1 23 553-575 530-552 (1193)
42 4hec_A Putative uncharacterize 34.4 53 0.0018 33.5 5.9 32 422-453 89-123 (190)
No 1
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=100.00 E-value=1.7e-78 Score=714.05 Aligned_cols=416 Identities=27% Similarity=0.361 Sum_probs=353.9
Q ss_pred CCceEEecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC---
Q 002293 342 YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--- 418 (940)
Q Consensus 342 p~~y~lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~--- 418 (940)
|.+|.+|++.+++.+|++.|... ++++|||||+|++++.+.+++ +++++.. +..+|++..+
T Consensus 4 ~~~y~~I~~~~~l~~~~~~l~~~---~~va~DtEttgl~~~~~~iv~----I~~~~~~---------g~~~yip~~~~~~ 67 (605)
T 2kfn_A 4 YDNYVTILDEETLKAWIAKLEKA---PVFAFDTETDSLDNISANLVG----LSFAIEP---------GVAAYIPVAHDYL 67 (605)
T ss_dssp SSSSEECCSHHHHHHHHHHHHTS---SSEEEEEEESCSCTTTCCEEE----EEEEEET---------TEEEEEECCCCST
T ss_pred hhheEEecCHHHHHHHHHhcccC---CeEEEEEecCCCCcccCceEE----EEEEEcC---------CcEEEEecccccc
Confidence 45688999999999999988664 479999999999998877765 3444322 2356774432
Q ss_pred -----CChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhcccc
Q 002293 419 -----GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493 (940)
Q Consensus 419 -----~~~e~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~ 493 (940)
.+.+++++.|+++|+++.+.||+||++||+++|.++|+.+.+++||||+|+||++|+.. +|+|++|+.+
T Consensus 68 ~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~---~~~L~~La~~--- 141 (605)
T 2kfn_A 68 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAG---RHDMDSLAER--- 141 (605)
T ss_dssp TCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSS---CCSHHHHHHH---
T ss_pred ccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCC---CCCHHHHHHH---
Confidence 12345678899999999999999999999999999999998889999999999999764 6999999997
Q ss_pred ccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002293 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (940)
Q Consensus 494 ~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L 573 (940)
||++. ...+++++||++. + .+|..+|+ +.+..||+.||.++++||+.|
T Consensus 142 ----~Lg~~--------------~i~~~~~~gKg~~--~----~~~~~~~l--------e~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 142 ----WLKHK--------------TITFEEIAGKGKN--Q----LTFNQIAL--------EEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp ----HSCCC--------------CCCHHHHHCSSTT--C----CCGGGSCH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hcCCC--------------cccHHHHhCCCcc--c----CCcccCCH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44332 1123445665431 1 24655553 457899999999999999999
Q ss_pred HHHHhh-cccccCCCCCCCchHHHHHHHHhcchHHHHHHHhHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 002293 574 KKKLLE-MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD 652 (940)
Q Consensus 574 ~~~Lee-~~~~~~~~~~~~~~l~~Ly~~IEmPL~~VLa~ME~~GI~VD~E~L~el~~~l~~e~e~le~ei~~~a~k~~~~ 652 (940)
.++|++ . ++.++|.++|||++++|++||.+||+||.+.|.++...+..+++.+++++++++
T Consensus 190 ~~~L~~~~------------~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~------ 251 (605)
T 2kfn_A 190 WPDLQKHK------------GPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIA------ 251 (605)
T ss_dssp HHHTTSCH------------HHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHh------------hHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 999986 4 688999999999999999999999999999999999999999999999998776
Q ss_pred CccccCCCHHHHHHHhcCCCCCCCCCCCCCCcccccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcC
Q 002293 653 AKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732 (940)
Q Consensus 653 g~~fNl~SpkQL~~lLF~~~~~~~~~~l~LP~er~~k~~~~~~~~~~~Kktp~~~~~i~l~~lG~~lp~~~kTktG~~ST 732 (940)
|..||++||+||+++||+ +||||+ .++||+|+|||
T Consensus 252 g~~fN~~Spkql~~~Lf~--------~lglp~-------------------------------------~kktk~g~~st 286 (605)
T 2kfn_A 252 GEEFNLSSTKQLQTILFE--------KQGIKP-------------------------------------LKKTPGGAPST 286 (605)
T ss_dssp SSCCCSCTTTTSHHHHTT--------TSSCSC-------------------------------------CCCCC----TT
T ss_pred CCCCCCCCHHHHHHHHHH--------hcCCCC-------------------------------------CCcCCCCCccc
Confidence 789999999999999998 688863 24689999999
Q ss_pred cHHHHHHHHhccCccccccCCCCCCCCCCCcccccchhcccccchhhhhHHHHHHHhHHHHHHHHHHHHhhhHhhhhhcc
Q 002293 733 GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPL 812 (940)
Q Consensus 733 d~evLe~L~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~i~~LLeyR~l~KLlstyi~~L 812 (940)
++++|++|+..||+ ++.||+||+++|+++||+++|
T Consensus 287 ~~~vL~~l~~~~p~---------------------------------------------~~~il~~r~l~Kl~sty~~~l 321 (605)
T 2kfn_A 287 SEEVLEELALDYPL---------------------------------------------PKVILEYRGLAKLKSTYTDKL 321 (605)
T ss_dssp TCCHHHHHTTTCSH---------------------------------------------HHHHHHHHHHHHHHHHTTTTG
T ss_pred cHHHHHHHHhcChH---------------------------------------------HHHHHHHHHHHHHhccHHHHH
Confidence 99999999877774 456999999999999999999
Q ss_pred ccCCccCCCCceeeeecC-CCccceeeecCCCccccCCCccchhhccceeecCCCCeEEEeeccchhHHHHHHhcCCHHH
Q 002293 813 QGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891 (940)
Q Consensus 813 ~~~~~~~~dGRIH~s~nq-gTaTGRLSSs~PNLQNIP~~~~~~~~iR~~Fia~~G~~LvsaDYSQIELRILAhlS~D~~L 891 (940)
++ .+.+.+|||||+|+| +|+||||||++|||||||++++.|+.||+||+|++|++||+|||||||||||||||+|+.|
T Consensus 322 ~~-~v~~~~grih~~~~~~~t~TGRlss~~PnlQniP~r~~~g~~iR~~f~~~~g~~lv~aDysqiElRilA~ls~d~~l 400 (605)
T 2kfn_A 322 PL-MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 400 (605)
T ss_dssp GG-GBCTTTSSBCCEEESSCCSSSCCEEESSCGGGSCSSSHHHHHHHHTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHH
T ss_pred HH-hhCcccCeecceeEecccccCceecCCCCcccCCCCccchHhHhheeeCCCCCEEEEechhhhHHHHHHHHcCCHHH
Confidence 97 454445999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHcCCCccccccc
Q 002293 892 LDAFKAGGDFHSRTAMNMYPHIRNAVETG 920 (940)
Q Consensus 892 i~af~~g~DiH~~tAs~~fg~~~eeVtk~ 920 (940)
+++|++|.|||+.||+.+||+|+|+||++
T Consensus 401 ~~af~~g~Dih~~tA~~~f~~~~e~vt~~ 429 (605)
T 2kfn_A 401 LTAFAEGKDIHRATAAEVFGLPLETVTSE 429 (605)
T ss_dssp HHHHHTTCCHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHhcCCCHHHHHHHHHhCCChhhcCHH
Confidence 99999999999999999999999999853
No 2
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=100.00 E-value=6.4e-76 Score=689.37 Aligned_cols=383 Identities=25% Similarity=0.313 Sum_probs=336.4
Q ss_pred eEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHH
Q 002293 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDN 448 (940)
Q Consensus 369 ~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfDL 448 (940)
..++|||+++++++.+.++| +++++++ ..+||+..+ ..+++.|+++|+|+.+.||+||+|+|+
T Consensus 31 ~~aldtE~~~~~~~~a~Lvg------isla~~~--------~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~K~Dl 93 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVG------IAVVNEH--------GRFFLRPET---ALADPQFVAWLGDETKKKSMFDSKRAA 93 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCE------EEEEETT--------EEEEECHHH---HTTCHHHHHHHTCTTSEEEESSHHHHH
T ss_pred CcEEEEEEcCCccCcccEEE------EEEEcCC--------ceEEEccch---hhHHHHHHHHHhCCCCeEEEechHHHH
Confidence 57999999999999988876 5555432 368887532 246788999999999999999999999
Q ss_pred HHHHHcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhcccc
Q 002293 449 HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528 (940)
Q Consensus 449 ~~L~r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k 528 (940)
++|.++|+.+++++||||||+|||+|+.. +|+|++|+.+ ||++. ....++++|+++
T Consensus 94 ~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~---~~~L~~La~~-------yLg~~--------------l~~~ee~~gkg~ 149 (592)
T 3pv8_A 94 VALKWKGIELCGVSFDLLLAAYLLDPAQG---VDDVAAAAKM-------KQYEA--------------VRPDEAVYGKGA 149 (592)
T ss_dssp HHHHHTTCCCCCEEEEHHHHHHHHCGGGC---CCSHHHHHGG-------GTCCS--------------SCCHHHHHCSGG
T ss_pred HHHHHcCCCCCCccchHHHHHHHcCCCCC---CCCHHHHHHH-------HcCCC--------------CchHHHhcCccc
Confidence 99999999999999999999999999764 6999999998 55543 112345666543
Q ss_pred cccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHhcchHHH
Q 002293 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608 (940)
Q Consensus 529 ~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~~~~~~~~~~~~~~l~~Ly~~IEmPL~~V 608 (940)
. +. .|. .+.+..|||.||.++++||+.|.++|++ .++.++|.++|||++++
T Consensus 150 ~--~~--------~~~-------~e~~~~YAa~DA~~l~~L~~~L~~~L~e------------~~l~~l~~~~E~pl~~v 200 (592)
T 3pv8_A 150 K--RA--------VPD-------EPVLAEHLVRKAAAIWELERPFLDELRR------------NEQDRLLVELEQPLSSI 200 (592)
T ss_dssp G--CC--------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTCHHHHHHTHHHHHHH
T ss_pred c--cc--------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chhhhHHHHHHhHHHHH
Confidence 1 11 121 2567899999999999999999999998 37899999999999999
Q ss_pred HHHHhHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhcCCCCCCCCCCCCCCccccc
Q 002293 609 LVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688 (940)
Q Consensus 609 La~ME~~GI~VD~E~L~el~~~l~~e~e~le~ei~~~a~k~~~~g~~fNl~SpkQL~~lLF~~~~~~~~~~l~LP~er~~ 688 (940)
|++||.+||+||.+.|.++...+..+++.+++++++++ |..||++||+||+++||+ +||||+
T Consensus 201 l~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~---- 262 (592)
T 3pv8_A 201 LAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELA------GQEFNINSPKQLGVILFE--------KLQLPV---- 262 (592)
T ss_dssp HHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC----
T ss_pred HHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------HcCCCC----
Confidence 99999999999999999999999999999999998876 788999999999999998 788873
Q ss_pred ccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCcccccc
Q 002293 689 KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768 (940)
Q Consensus 689 k~~~~~~~~~~~Kktp~~~~~i~l~~lG~~lp~~~kTktG~~STd~evLe~L~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 768 (940)
.++||+| |||++++|+.|+..||+
T Consensus 263 ---------------------------------~kktktg-~st~~~vL~~l~~~~p~---------------------- 286 (592)
T 3pv8_A 263 ---------------------------------LKKTKTG-YSTSADVLEKLAPYHEI---------------------- 286 (592)
T ss_dssp ---------------------------------CCEETTE-ECCCHHHHHHTTTTCTH----------------------
T ss_pred ---------------------------------CCCCCCC-CCchHHHHHHHHhhcch----------------------
Confidence 2468899 89999999999987774
Q ss_pred hhcccccchhhhhHHHHHHHhHHHHHHHHHHHHhhhHhhhhhccccCCccCCCCceeeeecC-CCccceeeecCCCcccc
Q 002293 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQ 847 (940)
Q Consensus 769 ~~~~~~~~~~f~~~~~~~~~~~~i~~LLeyR~l~KLlstyi~~L~~~~~~~~dGRIH~s~nq-gTaTGRLSSs~PNLQNI 847 (940)
++.||+||+++|++|||+++|++ .+...||||||+|+| +|+||||||++||||||
T Consensus 287 -----------------------~~~ile~R~l~kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlss~~PNlQni 342 (592)
T 3pv8_A 287 -----------------------VENILHYRQLGKLQSTYIEGLLK-VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNI 342 (592)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTHHHHH-HSBTTTTEECCEEESSCCSSSCCEEESSCCSSC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHH-hhccCCCEECceeeeCCceeeCcccccCCcccc
Confidence 45799999999999999999997 454458999999998 99999999999999999
Q ss_pred CCCccchhhccceeec-CCCCeEEEeeccchhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHcCCCcccccc
Q 002293 848 PALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919 (940)
Q Consensus 848 P~~~~~~~~iR~~Fia-~~G~~LvsaDYSQIELRILAhlS~D~~Li~af~~g~DiH~~tAs~~fg~~~eeVtk 919 (940)
|++++.|+.||+||+| ++|++||+|||||||||||||||+|+.|+++|++|.|||+.||+.|||+|+++||+
T Consensus 343 P~~~~~g~~iR~~Fv~~~~g~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~~vt~ 415 (592)
T 3pv8_A 343 PIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTP 415 (592)
T ss_dssp CCSSHHHHGGGGGEECSSTTEEEEEEEETTHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHSCCTTTCCH
T ss_pred CcCchhhHhhhhEEEecCCCCEEEEechhhHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChhhCCH
Confidence 9999999999999998 89999999999999999999999999999999999999999999999999999886
No 3
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=100.00 E-value=2.4e-71 Score=644.74 Aligned_cols=350 Identities=26% Similarity=0.329 Sum_probs=311.4
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfD 447 (940)
+.+|+|||+.+++++.+.++| ++++++ +..++++ .+++.|+++|+| +.||+||+|||
T Consensus 11 ~~valDtE~~~~~~~~a~Lvg------i~la~~--------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~K~D 67 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLA------LAAARG--------GRVHRAP-------EPYKALRDLKEA--RGLLAKDLSVL 67 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEE------EEEEET--------TEEEECS-------SHHHHHTTCSSB--CSTTHHHHHHH
T ss_pred CceEEEEEecCCccCcccEEE------EEEEcC--------CEEEEeh-------hhHHHHHHHHcC--CCEEEeccHHH
Confidence 459999999999999888765 444432 2356654 267889999999 67999999999
Q ss_pred HHHHHHcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhccc
Q 002293 448 NHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527 (940)
Q Consensus 448 L~~L~r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~ 527 (940)
++ ++|+.+. ++||||+||||++|+ + |+|++|+++ |+++ +|+
T Consensus 68 l~---~~Gi~~~-~~fDT~laAyLL~p~-~----~~L~~La~~-------yl~~----------------------~gk- 108 (540)
T 4dfk_A 68 AL---REGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARR-------YGGE----------------------WTE- 108 (540)
T ss_dssp HH---HTTCCCC-BCCCHHHHHHHHCTT-C----CCHHHHHHH-------HTSC----------------------CCS-
T ss_pred HH---HcCCCCC-cceeHHHHHHHhCCC-C----CCHHHHHHH-------Hhhh----------------------hcc-
Confidence 99 7899987 899999999999998 5 899999987 3311 111
Q ss_pred ccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCCCCCCchHHHHHHHHhcchH
Q 002293 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL-LEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606 (940)
Q Consensus 528 k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~L-ee~~~~~~~~~~~~~~l~~Ly~~IEmPL~ 606 (940)
+|+.||.++++||+.|.++| ++ .++..+|.++|||++
T Consensus 109 ------------------------------~a~~DA~~t~~L~~~L~~~L~~~------------~~~~~~~~~iE~pl~ 146 (540)
T 4dfk_A 109 ------------------------------EAGERAALSERLFANLWGRLEGE------------ERLLWLYREVERPLS 146 (540)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHTHHHHH
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHhHHH
Confidence 14479999999999999999 54 489999999999999
Q ss_pred HHHHHHhHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhcCCCCCCCCCCCCCCccc
Q 002293 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIER 686 (940)
Q Consensus 607 ~VLa~ME~~GI~VD~E~L~el~~~l~~e~e~le~ei~~~a~k~~~~g~~fNl~SpkQL~~lLF~~~~~~~~~~l~LP~er 686 (940)
++|++||.+||+||.++|.++...+..+++.+++++++.+ |..||++||+||+++||+ ++|||+
T Consensus 147 ~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~-- 210 (540)
T 4dfk_A 147 AVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA------GHPFNLNSRDQLERVLFD--------ELGLPA-- 210 (540)
T ss_dssp HHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC--
T ss_pred HHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------hcCCCC--
Confidence 9999999999999999999999999999999999998876 788999999999999998 688874
Q ss_pred ccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCcCcHHHH-HHHHhccCccccccCCCCCCCCCCCcc
Q 002293 687 IFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDAL-KTLARNISAEYDCVDGAHDLDDSGCTE 764 (940)
Q Consensus 687 ~~k~~~~~~~~~~~Kktp~~~~~i~l~~lG~~lp~~~kT-ktG~~STd~evL-e~L~~~~p~~~~~~~~~~~~~~~~~~~ 764 (940)
.++| |+| |||++++| +.|+..||+
T Consensus 211 -----------------------------------~~kt~ktg-~st~~~vL~e~L~~~~p~------------------ 236 (540)
T 4dfk_A 211 -----------------------------------IGKTEKTG-KRSTSAAVLEALREAHPI------------------ 236 (540)
T ss_dssp -----------------------------------CCBCTTTC-CBCCCHHHHHHTTTTCTH------------------
T ss_pred -----------------------------------CCCCCCCC-CCCcHHHHHHHhhhcChH------------------
Confidence 1356 788 99999999 999987774
Q ss_pred cccchhcccccchhhhhHHHHHHHhHHHHHHHHHHHHhhhHhhhhhccccCCccCCCCceeeeecC-CCccceeeecCCC
Q 002293 765 ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPN 843 (940)
Q Consensus 765 ~~~~~~~~~~~~~~f~~~~~~~~~~~~i~~LLeyR~l~KLlstyi~~L~~~~~~~~dGRIH~s~nq-gTaTGRLSSs~PN 843 (940)
++.||+||+++|+++||+++|++ .+...|||||++|+| +|+||||||++||
T Consensus 237 ---------------------------~~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PN 288 (540)
T 4dfk_A 237 ---------------------------VEKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPN 288 (540)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTTTGGG-GCCTTTCSBCCEEESSCCSSSCCEEESSC
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCEEeeeeecCcccccCccccCCc
Confidence 45799999999999999999997 455578999999998 8999999999999
Q ss_pred ccccCCCccchhhccceeecCCCCeEEEeeccchhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHcCCCcccccc
Q 002293 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919 (940)
Q Consensus 844 LQNIP~~~~~~~~iR~~Fia~~G~~LvsaDYSQIELRILAhlS~D~~Li~af~~g~DiH~~tAs~~fg~~~eeVtk 919 (940)
|||||++++.+..||+||+|++|++||+|||||||||||||||+|+.|+++|++|.|||+.||+.+||+|+|+|++
T Consensus 289 lQniP~~~~~g~~iR~~f~a~~G~~lv~aDySqiElRvlAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~~v~~ 364 (540)
T 4dfk_A 289 LQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDP 364 (540)
T ss_dssp CSCCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCH
T ss_pred ceeeeccCcchHhhhheEeCCCCCEEEEecHHHHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHcCCChhhcCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886
No 4
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=100.00 E-value=4.1e-67 Score=626.25 Aligned_cols=412 Identities=20% Similarity=0.164 Sum_probs=322.4
Q ss_pred eEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEecc-HHH
Q 002293 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY-SFD 447 (940)
Q Consensus 369 ~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNa-KfD 447 (940)
+|+|||||||+++..++| .|+++.+.. .+..+.+|+.. .++.++.|+++|+ +.+.||+||+ +||
T Consensus 1 ~vv~D~ETtGl~~~~d~i------~~iqi~~~~------~~~~~~~~p~~--i~~~l~~L~~~l~-~~~~kV~HNa~kfD 65 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKF------HCGVIYDYS------TAEYVSYRPSD--FGAYLDALEAEVA-RGGLIVFHNGHKYD 65 (698)
T ss_dssp CEEEEEEESSCGGGCCCE------EEEEEEETT------TTEEEEECGGG--HHHHHHHHHHHHH-TTCCEEESSTTTTH
T ss_pred CEEEEcCCCCcCCCCCEE------EEEEEEecC------CCcEEEEChHH--HHHHHHHHHHHHh-cCCeEEEcCChHHH
Confidence 489999999999877654 466665422 12345556542 2457889999999 8889999999 999
Q ss_pred HHHHHHc-------CCCCC-CccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccc
Q 002293 448 NHVLENY-------GLKVS-GFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKIS 519 (940)
Q Consensus 448 L~~L~r~-------GI~l~-n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s 519 (940)
+++|.++ |+.++ +++||||+|+||++|+.. +|+|++|+++|...+-.-.++.. . ..|..
T Consensus 66 ~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~---~~~L~~La~~~L~~sL~~~g~~l--------g--~~Ki~ 132 (698)
T 1x9m_A 66 VPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLK---DTDMGLLRSGKLPGALEAWGYRL--------G--EMKGE 132 (698)
T ss_dssp HHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSC---CCTTTTSCGGGSCSCCCHHHHHH--------H--HHHHH
T ss_pred HHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCC---CCCHHHHHHHHcccchhhhcccc--------c--ccccC
Confidence 9999876 99988 789999999999999765 69999999985211000002210 0 00123
Q ss_pred hhhhhc-----ccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--CCCCCCCc
Q 002293 520 MKDIFG-----RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL--DGKPVPGK 592 (940)
Q Consensus 520 ~kelfG-----K~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~~~~~--~~~~~~~~ 592 (940)
+++++| +++.. +. +.+|...+ +.+..||+.||.+|++||+.|.++|.+.++.+ ++. +.
T Consensus 133 ~~~~~g~~~~~kg~~~-~~--~~~~~~~~---------~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~l~~~~~---~~ 197 (698)
T 1x9m_A 133 YKDDFKRMLEEQGEEY-VD--GMEWWNFN---------EEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDV---GY 197 (698)
T ss_dssp HHHHHHHHHHHTTCCC-CT--TGGGTSCC---------HHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSS---CH
T ss_pred HHHHhCcccccccccc-cc--cCCccccC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc---cc
Confidence 344554 22110 10 12454322 46889999999999999999999998753310 000 01
Q ss_pred hHH----HHHHHHhcchHHHHHHHhHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hcC--------
Q 002293 593 SMF----DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS----------KHC-------- 650 (940)
Q Consensus 593 ~l~----~Ly~~IEmPL~~VLa~ME~~GI~VD~E~L~el~~~l~~e~e~le~ei~~~a~----------k~~-------- 650 (940)
.+. .+|.++|||++++|++||++||.||.+.|.++...+..+++.+++++++.++ .++
T Consensus 198 ~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (698)
T 1x9m_A 198 TTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPL 277 (698)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEECSCCBCCBCTTTCCBC
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhccccccchh
Confidence 222 6889999999999999999999999999999999999999999999998621 000
Q ss_pred ---------CCC------------------------------------ccccCCCHHHHHHHhcCCCCCCCCCCCCCCcc
Q 002293 651 ---------PDA------------------------------------KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE 685 (940)
Q Consensus 651 ---------~~g------------------------------------~~fNl~SpkQL~~lLF~~~~~~~~~~l~LP~e 685 (940)
..| ..||++||+||+++||+ +|||+
T Consensus 278 ~~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~S~~ql~~~L~~---------lgl~~- 347 (698)
T 1x9m_A 278 PKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQE---------AGWVP- 347 (698)
T ss_dssp TTSCCBBCCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEECCCTTCHHHHHHHHHH---------TTCCC-
T ss_pred cccccccccccccccccccccccccccccccccchhhccccccccccccccCCCCHHHHHHHHHH---------CCCCC-
Confidence 123 68999999999999995 66653
Q ss_pred cccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCccc
Q 002293 686 RIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765 (940)
Q Consensus 686 r~~k~~~~~~~~~~~Kktp~~~~~i~l~~lG~~lp~~~kTktG~~STd~evLe~L~~~~p~~~~~~~~~~~~~~~~~~~~ 765 (940)
.++|++|+|||++++|+.|+...|
T Consensus 348 ------------------------------------~~~t~~G~~st~~~vL~~l~~~~~-------------------- 371 (698)
T 1x9m_A 348 ------------------------------------TKYTDKGAPVVDDEVLEGVRVDDP-------------------- 371 (698)
T ss_dssp ------------------------------------CCBCTTSCBCCSHHHHHHCCCSCH--------------------
T ss_pred ------------------------------------CCcCCCCCcCCCHHHHHHHHhhcc--------------------
Confidence 356899999999999999985211
Q ss_pred ccchhcccccchhhhhHHHHHHHhHHHHHHHHHHHHhhhHhhhh---hccccCCccCCCCceeeeecC-CCccceeeecC
Q 002293 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSLNI-NTETGRLSARR 841 (940)
Q Consensus 766 ~~~~~~~~~~~~~f~~~~~~~~~~~~i~~LLeyR~l~KLlstyi---~~L~~~~~~~~dGRIH~s~nq-gTaTGRLSSs~ 841 (940)
+..++++.|++||+++|++|||+ ++|++ .+ .+||||||+||| ||+||||||++
T Consensus 372 ---------------------~~~p~~~~lle~r~l~kl~sty~~~~~~l~~-~v-~~dgrih~~~~~~gt~TGRlSs~~ 428 (698)
T 1x9m_A 372 ---------------------EKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-YV-AEDGKIHGSVNPNGAVTGRATHAF 428 (698)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHTTSTTCHHH-HC-CTTSEECCEEETTCSTTSCCEEES
T ss_pred ---------------------cCChHHHHHHHHHHHHHHHHhhhhhHHHHHH-hc-CCCCeEeeeEEeccccccccccCC
Confidence 01234678999999999999999 88886 34 578999999998 89999999999
Q ss_pred CCccccCC-Cccchhhccceeec--------CCCCeEEEeeccchhHHHHHHhc---CCHHHHHHHhcCCCchHHHHHHH
Q 002293 842 PNLQNQPA-LEKDRYKIRQAFIA--------VPGNSLIVADYGQLELRILAHLA---NCKSMLDAFKAGGDFHSRTAMNM 909 (940)
Q Consensus 842 PNLQNIP~-~~~~~~~iR~~Fia--------~~G~~LvsaDYSQIELRILAhlS---~D~~Li~af~~g~DiH~~tAs~~ 909 (940)
|||||||+ +++.|+.||+||+| ++|++||+||||||||||||||| +|+.|+++|++| |||+.||+ +
T Consensus 429 PNlQniP~~~~~~g~~iR~~F~a~~~~~~~~~~G~~lv~aDySqiElRilAhls~~~~D~~l~~af~~g-DiH~~tA~-~ 506 (698)
T 1x9m_A 429 PNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNG-DIHTKNQI-A 506 (698)
T ss_dssp SCTTCCCCTTSTTHHHHHHTBSGGGSBCTTTCCBCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHHS-CHHHHHHH-H
T ss_pred ccceeecccccccchhhhheeecCcccccCCCCCCEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHhCC-CHhHHHHH-H
Confidence 99999999 88889999999999 89999999999999999999999 999999999999 99999999 9
Q ss_pred cCCCc
Q 002293 910 YPHIR 914 (940)
Q Consensus 910 fg~~~ 914 (940)
||+|.
T Consensus 507 ~gv~~ 511 (698)
T 1x9m_A 507 AELPT 511 (698)
T ss_dssp SCCSS
T ss_pred hCCch
Confidence 99873
No 5
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=3.3e-66 Score=626.70 Aligned_cols=359 Identities=26% Similarity=0.293 Sum_probs=310.3
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfD 447 (940)
+.+++|+||++ ++.+.+| ++|++ .+ +..+||+. + + +.|+++|+++.+ |+|||
T Consensus 305 ~~va~d~et~~--~~~~~l~-----vg~a~--~~-------g~a~yvp~-~----~--~~Lk~lLed~~i-----n~K~d 356 (832)
T 1bgx_T 305 AFVGFVLSRKE--PMWADLL-----ALAAA--RG-------GRVHRAPE-P----Y--KALRDLKEARGL-----LAKDL 356 (832)
T ss_dssp CCBEEECSSSC--TTTCCCC-----EEECB--SS-------SEEECCSC-H----H--HHHHHCSSBCBT-----THHHH
T ss_pred ceEEEEEecCC--cccCcee-----EEEEE--cC-------CCEEEEEC-C----H--HHHHHHHhCCCC-----ChHHH
Confidence 46999999998 4444441 23332 22 34677755 2 1 579999999875 99999
Q ss_pred HHHHHHcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhccc
Q 002293 448 NHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527 (940)
Q Consensus 448 L~~L~r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~ 527 (940)
+++|.++|+.+. ++||||||+|||+|. . |+|++|+.+| |+
T Consensus 357 ~~~L~~~Gi~~~-~~~Dt~laayLl~p~-~----~~l~~l~~~~---------------------------------gk- 396 (832)
T 1bgx_T 357 SVLALREGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARRY---------------------------------GG- 396 (832)
T ss_dssp HHHHHHHTCCCC-BCCCHHHHHHHHCTT-C----CSTTHHHHHH---------------------------------SC-
T ss_pred HHHHHHcCCccC-cccCHHHHHHHcCCC-C----CCHHHHHHHh---------------------------------CC-
Confidence 999999999998 899999999999997 4 8999999763 11
Q ss_pred ccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCCCCCCCchHHHHHHHHhcchH
Q 002293 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL-EMSWKLDGKPVPGKSMFDFYQEYWQPFG 606 (940)
Q Consensus 528 k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Le-e~~~~~~~~~~~~~~l~~Ly~~IEmPL~ 606 (940)
.|. + + || .|+.++++|++.|.++|. + .++..+|.++|||++
T Consensus 397 ----------~~~--~---------~----ya-~da~~~~~l~~~l~~~L~~~------------~~~~~l~~~iE~pl~ 438 (832)
T 1bgx_T 397 ----------EWT--E---------E----AG-ERAALSERLFANLWGRLEGE------------ERLLWLYREVERPLS 438 (832)
T ss_dssp ----------CCC--S---------S----HH-HHHHHHHHHHHHHHHHHTTC------------HHHHHHHHTTHHHHH
T ss_pred ----------Cch--H---------H----HH-HHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHH
Confidence 010 1 1 77 699999999999999998 5 478999999999999
Q ss_pred HHHHHHhHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhcCCCCCCCCCCCCCCccc
Q 002293 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIER 686 (940)
Q Consensus 607 ~VLa~ME~~GI~VD~E~L~el~~~l~~e~e~le~ei~~~a~k~~~~g~~fNl~SpkQL~~lLF~~~~~~~~~~l~LP~er 686 (940)
++|++||++||+||.+.|.++...+..+++.+++++++++ |..||++||+||+++||+ +||||+
T Consensus 439 ~vl~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~------g~~fN~~Spkql~~~Lf~--------~lglp~-- 502 (832)
T 1bgx_T 439 AVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA------GHPFNLNSRDQLERVLFD--------ELGLPA-- 502 (832)
T ss_dssp HHHHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHSS------SSCCCCSCHHHHTTTTTT--------SCCCCC--
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCcCCCCHHHHHHHHHH--------hcCCCC--
Confidence 9999999999999999999999999999999999997654 789999999999999998 788873
Q ss_pred ccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCccc
Q 002293 687 IFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765 (940)
Q Consensus 687 ~~k~~~~~~~~~~~Kktp~~~~~i~l~~lG~~lp~~~kT-ktG~~STd~evLe~L~~~~p~~~~~~~~~~~~~~~~~~~~ 765 (940)
.++| |+|+|||++++|++|+..||++
T Consensus 503 -----------------------------------~kkt~ktG~~sT~~~vL~~l~~~~p~~------------------ 529 (832)
T 1bgx_T 503 -----------------------------------IGKTEKTGKRSTSAAVLEALREAHPIV------------------ 529 (832)
T ss_dssp -----------------------------------CCSSCCSSSSGGGTSTTTTGGGTCSTT------------------
T ss_pred -----------------------------------cccccccCCccchHHHHHHhHhcCcHH------------------
Confidence 2457 8999999999999998778854
Q ss_pred ccchhcccccchhhhhHHHHHHHhHHHHHHHHHHHHhhhHhhhhhccccCCccCCCCceeeeecC-CCccceeeecCCCc
Q 002293 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNL 844 (940)
Q Consensus 766 ~~~~~~~~~~~~~f~~~~~~~~~~~~i~~LLeyR~l~KLlstyi~~L~~~~~~~~dGRIH~s~nq-gTaTGRLSSs~PNL 844 (940)
+.||+||+++|+++||+++|++ .+.+.||||||+|+| +|+||||||++|||
T Consensus 530 ---------------------------~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PNL 581 (832)
T 1bgx_T 530 ---------------------------EKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPNL 581 (832)
T ss_dssp ---------------------------HHHHTHHHHSCSBTTBCCCTTT-SSCTTTCSBCCEEESSCCSSSCCEEESSCT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHH-hhCCCCCEEeeeeEecccceeeeecCCccc
Confidence 4689999999999999999997 565578999999998 99999999999999
Q ss_pred cccCCCccchhhccceeecCCCCeEEEeeccchhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHcCCCccccccccccc
Q 002293 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924 (940)
Q Consensus 845 QNIP~~~~~~~~iR~~Fia~~G~~LvsaDYSQIELRILAhlS~D~~Li~af~~g~DiH~~tAs~~fg~~~eeVtk~~~~~ 924 (940)
||||++++.|+.||+||+|++|++||+|||||||||||||||+|+.|+++|++|.|||+.||+.+||+++|+||+
T Consensus 582 QNiP~~~~~g~~iR~~Fva~~G~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~e~vt~----- 656 (832)
T 1bgx_T 582 QNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDP----- 656 (832)
T ss_dssp TSCCCSSTTTTTTGGGBCCCSSCCEEEEEESSHHHHHHHHTTTCTTHHHHHHHTCCHHHHHHHHHHTCCTTSCCT-----
T ss_pred cccccCchhhHHhhheEeCCCCCEEEEechhhhHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChhhcCH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccCCCCCCC
Q 002293 925 EWHGEDKPPV 934 (940)
Q Consensus 925 ~~~~~~k~~~ 934 (940)
+.|+.+|..+
T Consensus 657 ~~R~~aK~~n 666 (832)
T 1bgx_T 657 LMRRAAKTIN 666 (832)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555433
No 6
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.81 E-value=4.2e-19 Score=197.99 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=148.9
Q ss_pred ceEEecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhh
Q 002293 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (940)
Q Consensus 344 ~y~lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~ 423 (940)
+|.+|++.+++.++++.+... +.++||||+++.+++.+.++ +++++.+ +.++++|+..+ .
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~---~~va~D~E~~~~~~~~~~l~------liqla~~--------~~~~lid~~~l---~ 61 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAF---PAIALDTEFVRTRTYYPQLG------LIQLFDG--------EHLALIDPLGI---T 61 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTS---SEEEEEEEEECCSCSSCEEE------EEEEECS--------SCEEEECGGGC---S
T ss_pred CeEEeCCHHHHHHHHHHHcCC---CeEEEEeeecCCCcCCCceE------EEEEecC--------CcEEEEeCCCC---C
Confidence 478999999999999988664 58999999999887665554 3444432 23566664322 1
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhh
Q 002293 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (940)
Q Consensus 424 ~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r-~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~ 502 (940)
.+..|+++|+|+.+.||+||+++|+++|.+ +|+.+. .+|||++|+||+++.. +++|++|+++ |+++.
T Consensus 62 ~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~-~~fDt~lAa~lL~~~~----~~~L~~L~~~-------~l~~~ 129 (375)
T 1yt3_A 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQ-PLIDTQILAAFCGRPM----SWGFASMVEE-------YSGVT 129 (375)
T ss_dssp CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCS-SEEEHHHHHHHTTCCT----TCCHHHHHHH-------HHCCC
T ss_pred ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCC-cEEEcHHHHHHcCCCC----ChhHHHHHHH-------HcCCC
Confidence 457899999999999999999999999986 899986 6899999999999954 5999999997 44432
Q ss_pred ccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002293 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582 (940)
Q Consensus 503 ~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~~~ 582 (940)
+ .|+. +. .+|..+|++ +.+..|||.||.+++.||+.|.++|++.
T Consensus 130 --l-------------------~K~~---~~---sdw~~rpL~-------~~q~~YAa~Da~~l~~L~~~L~~~L~~~-- 173 (375)
T 1yt3_A 130 --L-------------------DKSE---SR---TDWLARPLT-------ERQCEYAAADVWYLLPITAKLMVETEAS-- 173 (375)
T ss_dssp --C-------------------CCTT---TT---SCTTSSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT--
T ss_pred --C-------------------CCCc---cc---CCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 0 0111 11 378888873 4689999999999999999999999984
Q ss_pred ccCCCCCCCchHHHH-HHHHhcchHHHHHHH
Q 002293 583 KLDGKPVPGKSMFDF-YQEYWQPFGEILVKM 612 (940)
Q Consensus 583 ~~~~~~~~~~~l~~L-y~~IEmPL~~VLa~M 612 (940)
++..+ |.++|+|+..+...+
T Consensus 174 ----------g~~~l~~~e~E~pl~~~~~~~ 194 (375)
T 1yt3_A 174 ----------GWLPAALDECRLMQMRRQEVV 194 (375)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHCCC
T ss_pred ----------CcHHHHHHHHHHHHhhcccCC
Confidence 45666 999999999987543
No 7
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.78 E-value=1.3e-18 Score=197.72 Aligned_cols=172 Identities=22% Similarity=0.202 Sum_probs=139.9
Q ss_pred ceEEecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhh
Q 002293 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (940)
Q Consensus 344 ~y~lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~ 423 (940)
.|++|++.++|.++++.+... +.||||||+++++++.+.++ +++++.. +..++||+... ..
T Consensus 109 ~y~~I~t~e~L~~~l~~L~~~---~~vavDtE~~~~~~~~~~l~------lIQLa~~--------~~~~lidpl~l--~~ 169 (428)
T 3saf_A 109 PCHFISSLDELVELNEKLLNC---QEFAVNLEHHSYRSFLGLTC------LMQISTR--------TEDFIIDTLEL--RS 169 (428)
T ss_dssp CEEEECSHHHHHHHHHHHTTC---SEEEEEEEEECTTCSSCEEE------EEEEECS--------SCEEEEETTTT--GG
T ss_pred CcEEECCHHHHHHHHHHHhcC---CeEEEEEEecCCCCCCCeEE------EEEEEeC--------CcEEEEEeccc--hh
Confidence 689999999999999999875 58999999999988876654 3555543 33678888754 24
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHH-HcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhh
Q 002293 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLE-NYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (940)
Q Consensus 424 ~l~~Lk~~Led~~i~KVgHNaKfDL~~L~-r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~ 502 (940)
.+..|+++|+|+.+.||+||+++|+++|. .+|+.+.+ +||||+|+||++++. +||+.|+++ ||++.
T Consensus 170 ~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~-~fDT~lAa~lL~~~~-----~gL~~Lv~~-------~Lg~~ 236 (428)
T 3saf_A 170 DMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVN-MFDTHQAARLLNLGR-----HSLDHLLKL-------YCNVD 236 (428)
T ss_dssp GGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHTTCSC-----CSHHHHHHH-------HHCCC
T ss_pred hHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCc-eeechhHHHHhCCCC-----CCHHHHHHH-------HcCCC
Confidence 67889999999999999999999999995 79999855 899999999999853 799999987 56553
Q ss_pred ccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002293 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMS 581 (940)
Q Consensus 503 ~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~~ 581 (940)
++| +. + ..+|..+|+ ++.++.|||.||.++++||+.|..+|.+.+
T Consensus 237 ------------l~K---------~~---~---~sdW~~rpL-------s~~q~~YAA~DA~~ll~L~~~L~~~L~~~g 281 (428)
T 3saf_A 237 ------------SNK---------QY---Q---LADWRIRPL-------PEEMLSYARDDTHYLLYIYDKMRLEMWERG 281 (428)
T ss_dssp ------------CCC---------TT---T---TSCTTCSSC-------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ------------CCc---------cc---c---ccccccCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111 11 1 137998898 367899999999999999999999999853
No 8
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.76 E-value=1.1e-17 Score=189.07 Aligned_cols=171 Identities=25% Similarity=0.247 Sum_probs=134.5
Q ss_pred ceEEecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhh
Q 002293 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (940)
Q Consensus 344 ~y~lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~ 423 (940)
.|.+|++.+++.++++.|... +.|+||||+++.+++.+.++ +++++.+ +.++++|+..+ ..
T Consensus 86 ~~~~I~t~~~L~~~~~~L~~~---~~vavDtE~~~~~~~~~~l~------liQla~~--------~~~ylid~l~l--~~ 146 (410)
T 2hbj_A 86 VPIWVDTSTELESMLEDLKNT---KEIAVDLEHHDYRSYYGIVC------LMQISTR--------ERDYLVDTLKL--RE 146 (410)
T ss_dssp CCEEECSHHHHHHHHHHHTTC---SEEEEEEEEECSSSSSCEEE------EEEEECS--------SCEEEEETTTT--TT
T ss_pred CcEEeCCHHHHHHHHHHHhhC---CceEEEeeecCCcCCCCcEE------EEEEEEC--------CcEEEEechhh--hh
Confidence 478999999999999988764 48999999999876655543 3555432 23566775433 23
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhh
Q 002293 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (940)
Q Consensus 424 ~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r-~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~ 502 (940)
.+..|+++|+|+.+.||+||+++|+++|.+ +|+.+.+ +|||++|+||+++.. ++|+.|+++ |+++.
T Consensus 147 ~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~-~fDt~lAa~LL~~~~-----~~L~~L~~~-------~lg~~ 213 (410)
T 2hbj_A 147 NLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG-LFDTYHASKAIGLPR-----HSLAYLLEN-------FANFK 213 (410)
T ss_dssp TGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHHTCSC-----CSHHHHHHH-------HSCCC
T ss_pred hHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCC-EEEcHHHHHHhCCCc-----cCHHHHHHH-------HcCCC
Confidence 567899999999999999999999999977 9999987 999999999999862 799999987 44432
Q ss_pred ccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002293 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (940)
Q Consensus 503 ~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~ 580 (940)
. +|+. +. .+|..+|++ +.++.|||.||.++++||+.|..+|.+.
T Consensus 214 ------------l---------~K~~---~~---sdW~~rpL~-------~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 214 ------------T---------SKKY---QL---ADWRIRPLS-------KPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp ------------C---------CCTT---TT---SCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ------------C---------Cccc---cc---cCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1211 11 379888873 5689999999999999999999999884
No 9
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.75 E-value=7.1e-18 Score=172.60 Aligned_cols=182 Identities=17% Similarity=0.148 Sum_probs=133.3
Q ss_pred hhhccCCceEEecCHHHHHHHH----HHHhccCCCceEEEEeccCCC--CcccCccccCcceeEEEeecCCCcccCCCce
Q 002293 337 KLASFYSNVMVVDNVSAAKKVV----WMLTNKYKHLVHACDTEVAKI--DVKQETPVDHGEVICFSIYSGPEADFGNGKS 410 (940)
Q Consensus 337 ~~~~~p~~y~lV~t~e~L~eli----~~L~~a~~~~~VAfDTETTGL--d~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~ 410 (940)
|...++.++.+|++++++..++ +.+... +.++||+|+++. +.+...++ +++++.+. +.
T Consensus 9 p~~~f~g~i~~i~~~~~~~~~~~~~~~~l~~~---~~v~~D~E~~~~~~~~~~~~~~------~iqla~~~-------~~ 72 (208)
T 2e6m_A 9 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDG---DVVGFDMEWPPIYKPGKRSRVA------VIQLCVSE-------SK 72 (208)
T ss_dssp CBCCCCSEEEEECSHHHHHHHHHHHHHHCCTT---CEEEEEEECCC---CCSCCCCC------EEEEECSS-------SE
T ss_pred CccccCCcEEEEeCHHHHHHHHHHHHHHhccC---CEEEEEeecCCCCCCCCCCCeE------EEEEecCC-------Ce
Confidence 3446778899999999998444 444443 479999999987 45444443 34444321 34
Q ss_pred EEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCcccc-HHHHHHhcCCCCCCCCCCCHHHHH
Q 002293 411 CIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHAD-TMHMARLWDSSRRTEGGYSLEALT 488 (940)
Q Consensus 411 ~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r-~GI~l~n~vfD-TmIAA~LLdp~~~~~~s~sLe~La 488 (940)
++|+|.... ......|+++|+++.+.||+||+|+|+++|.+ +|+.+.+ +|| |++|+||++|.. .++|++|+
T Consensus 73 ~~~i~~~~~--~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~-~fDlt~lAayll~~~~----~~~L~~L~ 145 (208)
T 2e6m_A 73 CYLFHISSM--SVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES-FVELTDVANEKLKCAE----TWSLNGLV 145 (208)
T ss_dssp EEEECGGGC--SSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCS-EEEHHHHHHHHTTCCC----CCCHHHHH
T ss_pred EEEEECccc--ccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCC-EEEHHHHHHHHccCCC----ChhHHHHH
Confidence 788876532 12456799999999999999999999999987 8999988 999 999999999843 58999999
Q ss_pred hccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHH
Q 002293 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLK 568 (940)
Q Consensus 489 ~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlr 568 (940)
++ ||++. +. | ++.. +. .+|..+|++ +.+..|||.||.++++
T Consensus 146 ~~-------~l~~~-----------~~-K-------~k~~---~~---s~W~~~~L~-------~~q~~YAa~Da~~~~~ 186 (208)
T 2e6m_A 146 KH-------VLGKQ-----------LL-K-------DKSI---RC---SNWSNFPLT-------EDQKLYAATDAYAGLI 186 (208)
T ss_dssp HH-------HHSCB-----------CC-C-------CHHH---HT---SCTTSSSCC-------HHHHHHHHHHHHHHHH
T ss_pred HH-------HcCCC-----------cC-C-------CCCe---ee---CCCCCCCCC-------HHHHHHHHHHHHHHHH
Confidence 97 44432 00 1 1110 11 379888873 5689999999999999
Q ss_pred HHHHHHHHHhhc
Q 002293 569 LYKSLKKKLLEM 580 (940)
Q Consensus 569 Lye~L~~~Lee~ 580 (940)
||+.|.++|++.
T Consensus 187 L~~~L~~~L~~~ 198 (208)
T 2e6m_A 187 IYQKLGNLGDTV 198 (208)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHhccchh
Confidence 999999999874
No 10
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=99.66 E-value=7.2e-18 Score=203.67 Aligned_cols=94 Identities=22% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCCceeeeecC-CCccceeeecCCCccccCCCccchhhccceeecCCCCeEEEeeccchhHHHHHHhcCCHHH-------
Q 002293 820 KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM------- 891 (940)
Q Consensus 820 ~dGRIH~s~nq-gTaTGRLSSs~PNLQNIP~~~~~~~~iR~~Fia~~G~~LvsaDYSQIELRILAhlS~D~~L------- 891 (940)
..|||||.+++ ||+|||...+.||.-+.|+....|++||++|+|++|++||+|||||||||| ||+++|+.|
T Consensus 769 ~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~~~~GreiR~aFva~~G~~lvsADySQIELRI-Aals~D~~l~~~~g~~ 847 (1172)
T 3ikm_A 769 LYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWI-AAVLGDAHFAGMHGCT 847 (1172)
T ss_dssp CCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSSCSTTSCCHHHHCCCTTEEEEEEECTTHHHHH-HHHHHHHHSSSTTCST
T ss_pred cCceeeeeeeecCccccccccCCcceecCCCCChhhHHhHheEeCCCCCEEEEecccHHHHHH-HHHcCChhhccccccc
Confidence 36999999998 999999666666666666655556799999999999999999999999998 889999998
Q ss_pred -------HHHHhcCCCchHHHHHHHcCCCcc
Q 002293 892 -------LDAFKAGGDFHSRTAMNMYPHIRN 915 (940)
Q Consensus 892 -------i~af~~g~DiH~~tAs~~fg~~~e 915 (940)
+++|++|.|||+.||+.+ |+++.
T Consensus 848 A~~~~~L~~af~~g~DIH~~TA~~v-gi~Rr 877 (1172)
T 3ikm_A 848 AFGWMTLQGRKSRGTDLHSKTATTV-GISRE 877 (1172)
T ss_dssp TTTTTCSCCTTTCTHHHHHHHHHTT-CCCSH
T ss_pred chhhhhhhhhhccCCcHHHHHHHHh-CCChh
Confidence 456899999999999988 87653
No 11
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.54 E-value=3.2e-14 Score=162.35 Aligned_cols=176 Identities=17% Similarity=0.110 Sum_probs=131.6
Q ss_pred hhhhccCCceEEecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEe
Q 002293 336 SKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415 (940)
Q Consensus 336 ~~~~~~p~~y~lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID 415 (940)
.+....| .+|++.+++.++++.|.... +.|+||||+++.+.+.+.++ +++++... +.++|||
T Consensus 12 ~p~~~~~---~~I~t~e~L~~~~~~L~~~~--~~vavDtE~~~~~~~~~~l~------liQla~~~-------~~~~lid 73 (440)
T 3cym_A 12 EPREGVP---NVIDTLPAFRDYCSELASSH--GSLAADAERASGFRYGHEDW------LVQFKRDG-------AGIGLLD 73 (440)
T ss_dssp SCTTCCC---CEECSHHHHHHHHHHHHSCE--EEEEEEEEECTTTSSSCCEE------EEEEEEET-------TEEEEEC
T ss_pred CCCCCCC---EeeCCHHHHHHHHHHHHhcC--CeEEEEeeecCCCCCCCCEE------EEEEEECC-------CcEEEEE
Confidence 3444554 58999999999999886531 47999999998877665554 34444321 2367887
Q ss_pred CCCCChh---hhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccccHHHHHHhcCCCCCCCCCCCHHHHHhccc
Q 002293 416 LLDGGGR---DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492 (940)
Q Consensus 416 ~~~~~~e---~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r~GI~l~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~ 492 (940)
+... . ..+..|+++|+|+ .||+|++++|+.+|..+|+.+. .+|||++|+|||++. .+||+.|++.
T Consensus 74 ~l~~--~~~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~~~gi~~~-~~fDt~lAa~lL~~~-----~~gL~~L~~~-- 141 (440)
T 3cym_A 74 PQAL--AAAGADWNDFNRAVGDA--VWILHDSLQDLPGFDELGMEPQ-RLFDTEIAARLLGLK-----RFGLAAVTEH-- 141 (440)
T ss_dssp HHHH--HHTTCCHHHHHHHHTTC--EEEESSHHHHHHHHHHHTCCCC-EEEEHHHHHHHTTCS-----SCSHHHHHHH--
T ss_pred cCCc--cccccCHHHHHHHHCCC--CEEEEcCHHHHHHHHHcCCcCC-ceehHHHHHHHhCCC-----CCCHHHHHHH--
Confidence 6310 1 2357899999996 6999999999999988999886 689999999999984 4899999987
Q ss_pred cccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002293 493 VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKS 572 (940)
Q Consensus 493 ~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~ 572 (940)
|+++. + .|+. +. .+|..+|++ +.++.|||.||.++++||+.
T Consensus 142 -----~lg~~--~-------------------~K~~---~~---sdw~~rpLs-------~~q~~YAa~Da~~Ll~L~~~ 182 (440)
T 3cym_A 142 -----FLGLT--L-------------------AKEH---SA---ADWSYRPLP-------RDWRNYAALDVELLIELETK 182 (440)
T ss_dssp -----HHCEE--C-------------------CCCC---TT---CCTTCSSCC-------HHHHHHHHHHHHTHHHHHHH
T ss_pred -----HhCCC--c-------------------cccc---cc---CCCcCCCCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 44442 0 0111 11 378888873 56899999999999999999
Q ss_pred HHHHHhhc
Q 002293 573 LKKKLLEM 580 (940)
Q Consensus 573 L~~~Lee~ 580 (940)
|..+|.+.
T Consensus 183 L~~~L~~~ 190 (440)
T 3cym_A 183 MRAELKRQ 190 (440)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999985
No 12
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.40 E-value=7.1e-13 Score=137.28 Aligned_cols=172 Identities=11% Similarity=0.025 Sum_probs=115.1
Q ss_pred EEecCHHHHHHHHHHHhcc---CCCceEEEEeccCCCC------cccCccccCcceeEEEeecCCCcccCCCceEEEEeC
Q 002293 346 MVVDNVSAAKKVVWMLTNK---YKHLVHACDTEVAKID------VKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDL 416 (940)
Q Consensus 346 ~lV~t~e~L~eli~~L~~a---~~~~~VAfDTETTGLd------~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~ 416 (940)
.+|.+.+++..+++.+... ....+|+||||+.... .+... .++..++++.+ ..++.+++
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~----~~~~LiQla~~--------~~~~l~~l 89 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSG----WSLSSVKLSTR--------NLCLFLRL 89 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGG----CEEEEEEEECS--------SEEEEEEC
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCC----CceEEEEEecC--------CCeEEEec
Confidence 4566777777777665210 0125899999998432 12210 02234555543 34666665
Q ss_pred CCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccccHH-HHHHhcCCC-CCCCCCCCHHHHHhcccc
Q 002293 417 LDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTM-HMARLWDSS-RRTEGGYSLEALTGDRKV 493 (940)
Q Consensus 417 ~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r-~GI~l~n~vfDTm-IAA~LLdp~-~~~~~s~sLe~La~~y~~ 493 (940)
.. .....+..|+++|+|+.+.||||++++|+..|++ +|+.+.+ +|||. +|+.+++.. .. .+||+.|++.
T Consensus 90 ~~-~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~-~~Dl~~la~~~lg~~~~~---~~gL~~Lv~~--- 161 (206)
T 1vk0_A 90 PK-PFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN-AINVGKLAAEARGTLVLE---FLGTRELAHR--- 161 (206)
T ss_dssp CS-SCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHHHTCGGGG---GCCHHHHHHH---
T ss_pred cc-cCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCC-eeeHHHHHHHHcCCCCCC---CccHHHHHHH---
Confidence 21 1123455688999999999999999999999976 7988754 89986 777766631 22 5899999987
Q ss_pred ccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002293 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (940)
Q Consensus 494 ~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L 573 (940)
+||.. + | .+.. +. ++|.. || ++.|+.|||.||.++++||+.|
T Consensus 162 ----~lg~~-----------l--K-------~k~~---~~---SdW~~-pL-------s~~Qi~YAA~Da~~l~~l~~~L 203 (206)
T 1vk0_A 162 ----VLWSD-----------L--G-------QLDS---IE---AKWEK-AG-------PEEQLEAAAIEGWLIVNVWDQL 203 (206)
T ss_dssp ----HHCCC-----------C--H-------HHHH---HH---HTGGG-SC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhCCc-----------C--C-------CCCc---cc---CCCCC-cC-------CHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 1 1 0000 11 38999 98 6899999999999999999998
Q ss_pred HH
Q 002293 574 KK 575 (940)
Q Consensus 574 ~~ 575 (940)
.+
T Consensus 204 ~~ 205 (206)
T 1vk0_A 204 SD 205 (206)
T ss_dssp HH
T ss_pred Hc
Confidence 64
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.90 E-value=5e-09 Score=109.09 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=102.2
Q ss_pred EecCHHHHHHHHHHHhccCCCceEEEEeccCCCCcccCccccCcceeEEEee---cCCCcccCCCceEEEEeCC------
Q 002293 347 VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWVDLL------ 417 (940)
Q Consensus 347 lV~t~e~L~eli~~L~~a~~~~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~---~~~gIq~g~~~~~~yID~~------ 417 (940)
-|++.+.+..+...+... .+++||+||||+++..+.|++ |-++.+. .+. +.+.. ....||.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~~---~~vviD~ETTGl~~~~~~Iie---Igav~~~~~~~g~-i~~~~-~f~~~v~P~~~~~i~ 91 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGF---YPVVIDVETAGFNAKTDALLE---IAAITLKMDEQGW-LMPDT-TLHFHVEPFVGANLQ 91 (235)
T ss_dssp ---------CHHHHTTTE---EEEEEEEEESSSCTTTBCEEE---EEEEEEEECTTSC-EEEEE-EEEEEBCCCTTCBCC
T ss_pred cccccccccCchhcccCC---cEEEEEEeCCCCCCCCCeEEE---EEEEEEEEcCCCc-ccccc-eEEEEECCCCCCCCC
Confidence 345667778888888775 589999999999998888776 1222222 121 10000 112234331
Q ss_pred -------CC----------ChhhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCCC----CccccH
Q 002293 418 -------DG----------GGRDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKVS----GFHADT 465 (940)
Q Consensus 418 -------~~----------~~e~~l~~Lk~~Led-------~~i~KVgHNaKfDL~~L~r----~GI~l~----n~vfDT 465 (940)
++ +..+++..|.+++.+ ....+|+||++||+.+|++ +|+... ..++||
T Consensus 92 ~~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt 171 (235)
T 3v9w_A 92 PEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDT 171 (235)
T ss_dssp HHHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEH
T ss_pred HHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEh
Confidence 01 123467777777752 3567999999999999864 588542 358999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchh
Q 002293 466 MHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVE 545 (940)
Q Consensus 466 mIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~ 545 (940)
+.+++++.|. ++|++|+++| ++. .+ + .
T Consensus 172 ~~la~~~~p~------~~L~~l~~~~--------gi~--------~~------------~-------~------------ 198 (235)
T 3v9w_A 172 AALAGLALGQ------TVLSKACQTA--------GMD--------FD------------S-------T------------ 198 (235)
T ss_dssp HHHHHHHHSC------CSHHHHHHHH--------TCC--------CC------------T-------T------------
T ss_pred HHHHHHHhCC------CCHHHHHHHc--------CCC--------CC------------C-------C------------
Confidence 9999988763 6899999863 111 00 0 0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002293 546 ELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (940)
Q Consensus 546 ~l~~~~~e~~l~YAA~DA~~tlrLye~L~~~Lee~ 580 (940)
..-+|..||.+|.+|+..|.+++++.
T Consensus 199 ---------~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 199 ---------QAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp ---------TTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 01247789999999999999999874
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.35 E-value=2e-06 Score=86.51 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=73.5
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC--------------------CChhhhHhh
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--------------------GGGRDLLNE 427 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~--------------------~~~e~~l~~ 427 (940)
.+++||+||||+++..+.|+. |-++.+..+. + + . ....||.+.. .+..+++..
T Consensus 13 ~~v~iD~ETTGl~~~~~~Iie---Ig~v~~~~g~-i-~-~-~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 85 (186)
T 2p1j_A 13 TFVVLDFETTGLDPQVDEIIE---IGAVKIQGGQ-I-V-D-EYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPE 85 (186)
T ss_dssp CEEEEEEEESCSCTTTCCEEE---EEEEEEETTE-E-E-E-EEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEE---EEEEEEECCE-E-E-E-EEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHH
Confidence 489999999999987777765 1223233221 1 0 0 1123444321 123457778
Q ss_pred hhhhhcCCCceEEEeccHHHHHHHHH----cCCCC-CCccccHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 002293 428 FAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKV-SGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 428 Lk~~Led~~i~KVgHNaKfDL~~L~r----~GI~l-~n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~ 490 (940)
|..++++. .+|+||+.||+.+|.+ +|+.. ...++||+.+++.+. ... +++|++|++.
T Consensus 86 ~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~---~~~L~~l~~~ 147 (186)
T 2p1j_A 86 FLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLR---SYSLDSVVEK 147 (186)
T ss_dssp HHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCS---CCSHHHHHHH
T ss_pred HHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcC---CCCHHHHHHH
Confidence 88888763 6899999999999963 57764 466899998888766 332 6899999975
No 15
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.30 E-value=6.1e-06 Score=83.12 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=74.1
Q ss_pred ceEEEEeccCCCCc-----ccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC-----------C---------Chh
Q 002293 368 LVHACDTEVAKIDV-----KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-----------G---------GGR 422 (940)
Q Consensus 368 ~~VAfDTETTGLd~-----~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~-----------~---------~~e 422 (940)
.+++||+||||+++ ..+.|+. |-++.+..+. + ++ .....+|.+.. + +..
T Consensus 10 ~~vviD~ETTGl~~~~~~~~~~~Iie---ig~v~~~~~~-~-~~-~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~ 83 (194)
T 2gui_A 10 RQIVLDTETTGMNQIGAHYEGHKIIE---IGAVEVVNRR-L-TG-NNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp EEEEEEEEESCCCSSSSTTTTCCEEE---EEEEEEETTE-E-CS-CCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHH
T ss_pred CEEEEEeeCCCCCCcccCCCCCEEEE---EEEEEEECCe-E-ec-cEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHH
Confidence 47999999999998 3466654 2233333221 1 11 11234554421 1 134
Q ss_pred hhHhhhhhhhcCCCceEEEeccHHHHHHHHH----cCCCCC-----CccccHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 002293 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKVS-----GFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 423 ~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r----~GI~l~-----n~vfDTmIAA~LLdp~~~~~~s~sLe~La~~ 490 (940)
+++..|..++.+. .+|+||+.||+.+|.+ +|+..+ ..++||+..++.+.|.. .++|++|++.
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~----~~~L~~l~~~ 154 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK----RNSLDALCAR 154 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS----CCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC----CCCHHHHHHH
Confidence 5777888888764 5899999999999864 687733 46899998888887765 4799999975
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.19 E-value=6e-06 Score=87.00 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=74.7
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCC--------CcccC-----C--CceEEEEeCCC-----------C--
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFG-----N--GKSCIWVDLLD-----------G-- 419 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~--------gIq~g-----~--~~~~~yID~~~-----------~-- 419 (940)
.+|+||+||||+++..++|+. |-++.+..+. +.+.+ . .....+|.+.. +
T Consensus 13 ~~vv~D~ETTGl~~~~d~IiE---Igav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~ 89 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSRPEVTE---LCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp EEEEEEEEESSCGGGCCCEEE---EEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred eEEEEEeecCCCCCCCCeeEE---EEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence 589999999999998888876 2344443320 00000 0 01123454421 1
Q ss_pred ---------Chh-hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCC--CC-ccccHHHHHHhcC----CC
Q 002293 420 ---------GGR-DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKV--SG-FHADTMHMARLWD----SS 475 (940)
Q Consensus 420 ---------~~e-~~l~~Lk~~Led~--~i~KVgHNa-KfDL~~L~r----~GI~l--~n-~vfDTmIAA~LLd----p~ 475 (940)
..+ +++..|..|+++. ....|+||+ .||+.+|.+ +|+.. .+ .++||+.+++.+. |+
T Consensus 90 ~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 122 6777888888872 246899996 999999963 68774 23 5799999888443 22
Q ss_pred C-CCCCCCCHHHHHhc
Q 002293 476 R-RTEGGYSLEALTGD 490 (940)
Q Consensus 476 ~-~~~~s~sLe~La~~ 490 (940)
. ...++|+|++|+++
T Consensus 170 ~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTR 185 (242)
T ss_dssp -----CCCSHHHHHHH
T ss_pred ccCCCCCcCHHHHHHH
Confidence 1 00136999999976
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.13 E-value=6.9e-06 Score=85.32 Aligned_cols=65 Identities=28% Similarity=0.378 Sum_probs=47.0
Q ss_pred hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCCC--CccccHHHHHHhcC---------CCCCCCCCCCH
Q 002293 423 DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKVS--GFHADTMHMARLWD---------SSRRTEGGYSL 484 (940)
Q Consensus 423 ~~l~~Lk~~Led~--~i~KVgHNa-KfDL~~L~r----~GI~l~--n~vfDTmIAA~LLd---------p~~~~~~s~sL 484 (940)
++...|..|++.- ....|+||+ .||+.+|.+ +|+.+. ..++||+.+++.+. |... +++|
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~---~~~L 174 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQ---GYSL 174 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------------CCSH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCC---CCCH
Confidence 4567788888762 157899999 999999963 687764 35899998887664 4433 6899
Q ss_pred HHHHhc
Q 002293 485 EALTGD 490 (940)
Q Consensus 485 e~La~~ 490 (940)
++|+++
T Consensus 175 ~~l~~~ 180 (238)
T 1y97_A 175 GSLFHR 180 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 18
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.12 E-value=1.2e-05 Score=83.10 Aligned_cols=112 Identities=18% Similarity=0.083 Sum_probs=69.2
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEee---cCCCcccCCCceEEEEeCC-------------CC----------Ch
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWVDLL-------------DG----------GG 421 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~---~~~gIq~g~~~~~~yID~~-------------~~----------~~ 421 (940)
.+++||+||||+++..+.|+. |-++.+. .+. +.+.. ....||.+. ++ +.
T Consensus 30 ~~vviD~ETTGl~~~~~~Iie---Ig~v~~~~~~~g~-i~~~~-~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~ 104 (224)
T 2f96_A 30 LPVVVDVETGGFNSATDALLE---IAATTVGMDEKGF-LFPEH-TYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQE 104 (224)
T ss_dssp EEEEEEEEESSSCTTTBCEEE---EEEEEEEECTTSC-EEEEE-EEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCH
T ss_pred cEEEEEeeCCCCCCCCCeeEE---EEEEEEEEcCCCc-ccccc-eEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 489999999999988777765 2233333 221 11100 112345431 01 12
Q ss_pred hhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCC----CCccccHHHHHHhcCCCCCCCCCCCHHH
Q 002293 422 RDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKV----SGFHADTMHMARLWDSSRRTEGGYSLEA 486 (940)
Q Consensus 422 e~~l~~Lk~~Led-------~~i~KVgHNaKfDL~~L~r----~GI~l----~n~vfDTmIAA~LLdp~~~~~~s~sLe~ 486 (940)
.+++..|.+++.+ ....+|+||+.||+.+|.+ +|+.. ...++||+.+++.+.| .++|++
T Consensus 105 ~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~------~~~L~~ 178 (224)
T 2f96_A 105 EAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG------QTVLAK 178 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS------CCSHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC------CCCHHH
Confidence 3345556666541 2346899999999999963 57752 2458999998886655 268999
Q ss_pred HHhc
Q 002293 487 LTGD 490 (940)
Q Consensus 487 La~~ 490 (940)
|++.
T Consensus 179 l~~~ 182 (224)
T 2f96_A 179 ACQA 182 (224)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.01 E-value=2e-05 Score=86.55 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=74.1
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCC--------C--cccC-----CCceEEEEeCCC-----------CC-
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------E--ADFG-----NGKSCIWVDLLD-----------GG- 420 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~--------g--Iq~g-----~~~~~~yID~~~-----------~~- 420 (940)
.+|+||+||||+++..++|+. |-++.+..+. + ..++ ......+|.+.. ++
T Consensus 13 tfVv~DlETTGL~~~~d~IIE---IgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~ 89 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSRPEVTE---LCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (314)
T ss_dssp EEEEEEEEESSCGGGCCCEEE---EEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred CEEEEEEECCCCCCCCCeEEE---EEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence 589999999999998888876 3344443321 0 0000 001234455421 11
Q ss_pred ----------h-hhhHhhhhhhhcCC--CceEEEec-cHHHHHHHHH----cCCCCC---CccccHHHHHH-h---cCCC
Q 002293 421 ----------G-RDLLNEFAPFFEDP--SIKKVWHN-YSFDNHVLEN----YGLKVS---GFHADTMHMAR-L---WDSS 475 (940)
Q Consensus 421 ----------~-e~~l~~Lk~~Led~--~i~KVgHN-aKfDL~~L~r----~GI~l~---n~vfDTmIAA~-L---Ldp~ 475 (940)
. ++++..|.+|+++. ...+|+|| +.||+.+|.+ +|+... ..++||+.+.+ | +.|.
T Consensus 90 e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 1 36677788888872 24789999 9999999963 687753 34789998665 3 2333
Q ss_pred C-CCCCCCCHHHHHhc
Q 002293 476 R-RTEGGYSLEALTGD 490 (940)
Q Consensus 476 ~-~~~~s~sLe~La~~ 490 (940)
. ....+|+|++|+++
T Consensus 170 ~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTR 185 (314)
T ss_dssp ----CCCCSHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 1 00237999999986
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.80 E-value=9.6e-05 Score=74.55 Aligned_cols=63 Identities=19% Similarity=-0.026 Sum_probs=42.6
Q ss_pred hhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccccHHHHHHh----cCCCCCCCCCCCHHHHHhc
Q 002293 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL----WDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 421 ~e~~l~~Lk~~Led~~i~KVgHNaKfDL~~L~r~GI~l~n~vfDTmIAA~L----Ldp~~~~~~s~sLe~La~~ 490 (940)
..+++..|..++.+ ..+|+||+.||+.+|.+.- ....++||+....+ ..|... .++|++|+++
T Consensus 70 ~~~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~---~~~L~~l~~~ 136 (189)
T 1wlj_A 70 FAVARLEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCR---RVSLRVLSER 136 (189)
T ss_dssp HHHHHHHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC--------CCHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCC---CccHHHHHHH
Confidence 35577788888875 4789999999999997532 12358999875321 233322 6899999986
No 21
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.78 E-value=2.4e-05 Score=79.67 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=66.7
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEe-CC-----------------C---------CC
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD-LL-----------------D---------GG 420 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID-~~-----------------~---------~~ 420 (940)
.+|+||+||||+++..++|+. |-++ +.++....++. ...++|. +. + .+
T Consensus 10 ~~v~~D~ETTGL~p~~d~IiE---IgaV-~~d~~~~i~~~-~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 10 NLIWLDLEMTGLDPERDRIIE---IATI-VTNSHLDILAE-GPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp CEEEEEEEESSSCTTTCCEEE---EEEE-EECTTCCEEEE-CCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred cEEEEEEECCCCCCCCCceEE---EEEE-EEcCCeEEeee-eEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 589999999999999998876 2344 54442211111 1123341 11 1 12
Q ss_pred hhhhHhhhhhhhcC----CCceEEEeccHHHHHHHHH----cCCCCCCcccc--HHH-HHHhcCCC
Q 002293 421 GRDLLNEFAPFFED----PSIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDSS 475 (940)
Q Consensus 421 ~e~~l~~Lk~~Led----~~i~KVgHNaKfDL~~L~r----~GI~l~n~vfD--TmI-AA~LLdp~ 475 (940)
..+++..|.+|+.. .....|+||+.||+.+|.+ .|..+...++| |+- +++.+.|+
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~ 150 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ 150 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcc
Confidence 45677778888831 2346899999999999975 35555667889 886 78877764
No 22
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.75 E-value=8.4e-05 Score=75.14 Aligned_cols=116 Identities=9% Similarity=-0.073 Sum_probs=70.7
Q ss_pred ceEEEEeccCCCCc----ccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC---C-------------------Ch
Q 002293 368 LVHACDTEVAKIDV----KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD---G-------------------GG 421 (940)
Q Consensus 368 ~~VAfDTETTGLd~----~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~---~-------------------~~ 421 (940)
.+++||+||||+++ ..+.|+. |-++.+....+..+ + ....||.+.. + +.
T Consensus 11 ~~vviD~ETTGl~~~~~~~~~~Iie---igav~~~~~~g~i~-~-~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~ 85 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPPEFVHEIIE---FPVVLLNTHTLEIE-D-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 85 (204)
T ss_dssp EEEECCCEECCCTTCCTTSCCCEEE---EEEEEEETTTCSEE-E-EEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCH
T ss_pred EEEEEEEecCCcCCCCCCCCCcEEE---EEEEEEECCCCEEe-e-eeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCH
Confidence 47999999999996 4566654 12222321111000 0 1123444321 1 13
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccccHHHHHHhcCCCCCCCCCCCHHHHH
Q 002293 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEALT 488 (940)
Q Consensus 422 e~~l~~Lk~~Led~~-----i~KVgHNaKfDL~-~L~r----~GI~l~n---~vfDTmIAA~LLdp~~~~~~s~sLe~La 488 (940)
.+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+-.++-+.+.. ..+++|++|+
T Consensus 86 ~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~--~~~~~L~~l~ 163 (204)
T 1w0h_A 86 PQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP--RSQTKLTIML 163 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC--GGGCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC--CccchHHHHH
Confidence 456777888887642 3479999999996 8853 6877553 5899998776444431 1148999999
Q ss_pred hc
Q 002293 489 GD 490 (940)
Q Consensus 489 ~~ 490 (940)
+.
T Consensus 164 ~~ 165 (204)
T 1w0h_A 164 EK 165 (204)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 23
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=97.71 E-value=0.00018 Score=83.24 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=73.2
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC-------------CC----------hhhh
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------GG----------GRDL 424 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~-------------~~----------~e~~ 424 (940)
.+|+||+||||+++..+.|+. |-++.+. ..+..++. ....||.+.. ++ ..++
T Consensus 10 ~~vv~DlETTGl~p~~d~IIE---IgaV~vd-~~g~ii~~-~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~ev 84 (482)
T 2qxf_A 10 TFLFHDYETFGTHPALDRPAQ---FAAIRTD-SEFNVIGE-PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp EEEEEEEEESSSCTTTSCEEE---EEEEEEC-TTSCBCSC-CEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEE---EEEEEEE-CCCeEEee-eeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHH
Confidence 589999999999998887765 2233332 22222221 1234553321 11 2456
Q ss_pred HhhhhhhhcCCCceEEEec-cHHHHHHHH----HcCCC-CC------CccccHHHHHHhcCCC----------CCCCCCC
Q 002293 425 LNEFAPFFEDPSIKKVWHN-YSFDNHVLE----NYGLK-VS------GFHADTMHMARLWDSS----------RRTEGGY 482 (940)
Q Consensus 425 l~~Lk~~Led~~i~KVgHN-aKfDL~~L~----r~GI~-l~------n~vfDTmIAA~LLdp~----------~~~~~s~ 482 (940)
+..|..++..+....|+|| +.||+.+|. ++|+. +. +..+||+-+++.+.+. .....++
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCC
Confidence 6677788874456799999 899999985 35665 22 4578999877765320 0012368
Q ss_pred CHHHHHhc
Q 002293 483 SLEALTGD 490 (940)
Q Consensus 483 sLe~La~~ 490 (940)
+|++|++.
T Consensus 165 kL~~L~~~ 172 (482)
T 2qxf_A 165 RLEHLTKA 172 (482)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999875
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.46 E-value=0.00058 Score=73.98 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=69.5
Q ss_pred ceEEEEeccCCCC----cccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC-------------C---------Ch
Q 002293 368 LVHACDTEVAKID----VKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------G---------GG 421 (940)
Q Consensus 368 ~~VAfDTETTGLd----~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~-------------~---------~~ 421 (940)
.+|+||+||||++ +..+.|+. |-++.+..+.+. +.+ ....||.+.. + +.
T Consensus 79 ~~vviD~ETTGl~~~~~~~~~~IIe---IgaV~v~~~~g~-i~~-~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~ 153 (299)
T 1zbh_A 79 YICIIDFEATCEEGNPPEFVHEIIE---FPVVLLNTHTLE-IED-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 153 (299)
T ss_dssp EEEEECCEECCCTTCCTTCCCCEEE---EEEEEEETTTCC-EEE-EEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCH
T ss_pred eEEEEEeecccCCCCCCCCCCceEE---EEEEEEECCCCe-Eee-eeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCH
Confidence 5799999999997 45566665 122333221110 100 1123454321 1 14
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccccHHHHHHhcCCCCCCCCCCCHHHHH
Q 002293 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEALT 488 (940)
Q Consensus 422 e~~l~~Lk~~Led~~-----i~KVgHNaKfDL~-~L~r----~GI~l~n---~vfDTmIAA~LLdp~~~~~~s~sLe~La 488 (940)
.+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+....-+.+. . .+.++|++|+
T Consensus 154 ~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~-~~~~~L~~l~ 231 (299)
T 1zbh_A 154 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-P-RSQTKLTIML 231 (299)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-C-GGGCSHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCC-C-CCCccHHHHH
Confidence 567777888887641 4689999999999 9854 6877542 588998655432211 1 1148999999
Q ss_pred hc
Q 002293 489 GD 490 (940)
Q Consensus 489 ~~ 490 (940)
+.
T Consensus 232 ~~ 233 (299)
T 1zbh_A 232 EK 233 (299)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 25
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.45 E-value=0.00022 Score=70.92 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=60.4
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCC------------------CC---------C
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------DG---------G 420 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~------------------~~---------~ 420 (940)
.+++||+||||+++..+.|+. ++.....+.+..+.. ....||.+. ++ +
T Consensus 6 ~~v~iD~ETTGl~~~~~~Iie----Ig~v~~~~~~~~~~~-~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 6 NLIWIDLEMTGLDPERDRIIE----IATLVTDANLNILAE-GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp CEEEEEEEESSSCTTTCCEEE----EEEEEECTTCCEEEE-EEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred cEEEEEeeCCCCCCCCCceEE----EEEEEEcCCCcEecC-CcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 489999999999998777765 332233322211110 012344321 11 2
Q ss_pred hhhhHhhhhhhhcCC----CceEEEeccHHHHHHHHH----cCCCCCCcccc--HHH-HHHhcCC
Q 002293 421 GRDLLNEFAPFFEDP----SIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDS 474 (940)
Q Consensus 421 ~e~~l~~Lk~~Led~----~i~KVgHNaKfDL~~L~r----~GI~l~n~vfD--TmI-AA~LLdp 474 (940)
..+++..|.+++.+. ...+|+||+.||+.+|.+ +|..+...++| |+. +++.+.|
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p 145 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKP 145 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhCh
Confidence 345667788888751 246899999999999975 23334455678 663 4444433
No 26
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=97.02 E-value=0.0016 Score=67.34 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=66.0
Q ss_pred ceEEEEeccCCCCcccC--ccccCcceeEEEeecCCCcccCCCceEEEEeCCC---C-------------------Chhh
Q 002293 368 LVHACDTEVAKIDVKQE--TPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD---G-------------------GGRD 423 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d--~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~---~-------------------~~e~ 423 (940)
.+++||+||||+++..+ .|+. |-++.+..+.+ .+.. ....||.+.. + +..+
T Consensus 32 ~~vviD~ETTGl~~~~d~~~Iie---Igav~v~~~~~-~i~~-~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 32 YFLVLDFEATCDKPQIHPQEIIE---FPILKLNGRTM-EIES-TFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp EEEEECCEECCCC-CCSSCCEEE---EEEEEEETTTC-CEEE-EEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred eEEEEEEEcCCCCCCCCCcceEE---EEEEEEecCCc-EEee-eeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 48999999999998654 6655 22333333211 1100 1123444321 1 2456
Q ss_pred hHhhhhhhhcCCCceEEEecc--------HHHHHH-HH----HcCCCCC---Ccccc---HHHHHHhcCCCCCCCCCCCH
Q 002293 424 LLNEFAPFFEDPSIKKVWHNY--------SFDNHV-LE----NYGLKVS---GFHAD---TMHMARLWDSSRRTEGGYSL 484 (940)
Q Consensus 424 ~l~~Lk~~Led~~i~KVgHNa--------KfDL~~-L~----r~GI~l~---n~vfD---TmIAA~LLdp~~~~~~s~sL 484 (940)
++..|..|+.+. ..|+||+ .||+.+ |. ++|+..+ ..++| |+-.++-+.| .++|
T Consensus 107 v~~~f~~~l~~~--~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p------~~~L 178 (224)
T 2xri_A 107 VLERVDEWMAKE--GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP------KNGL 178 (224)
T ss_dssp HHHHHHHHHHHT--TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC------TTTH
T ss_pred HHHHHHHHHhhc--ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC------CCCH
Confidence 777888888865 3689999 999996 63 3687764 25789 4444443333 3789
Q ss_pred HHHHhc
Q 002293 485 EALTGD 490 (940)
Q Consensus 485 e~La~~ 490 (940)
.+|++.
T Consensus 179 ~~l~~~ 184 (224)
T 2xri_A 179 LDMNKG 184 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999975
No 27
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.00 E-value=0.0013 Score=73.01 Aligned_cols=116 Identities=9% Similarity=-0.049 Sum_probs=68.8
Q ss_pred ceEEEEeccCCCC----cccCccccCcceeEEEeecCCCcccCCCceEEEEeCCC-------------C---------Ch
Q 002293 368 LVHACDTEVAKID----VKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------G---------GG 421 (940)
Q Consensus 368 ~~VAfDTETTGLd----~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~-------------~---------~~ 421 (940)
.+|+||+||||++ +..+.|+.+| ++.+..+.+. +.+ ....||.+.. + +.
T Consensus 129 ~~vviD~ETTGl~~~~~~~~deIIEIg---aV~vd~~~g~-i~~-~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~ 203 (349)
T 1zbu_A 129 YICIIDFEATCEEGNPPEFVHEIIEFP---VVLLNTHTLE-IED-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 203 (349)
T ss_dssp EEEECCCEECCCTTCCTTCCCCEEECC---EEEEETTTTE-EEE-EECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEH
T ss_pred eEEEEEEecCCCCCcCCCCCCeEEEEE---EEEEECCCce-EeE-EEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCH
Confidence 5799999999996 4556676522 3333321110 000 0112343321 1 13
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccccHHHHHHhcCCCCCCCCCCCHHHHH
Q 002293 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEALT 488 (940)
Q Consensus 422 e~~l~~Lk~~Led~~-----i~KVgHNaKfDL~-~L~r----~GI~l~n---~vfDTmIAA~LLdp~~~~~~s~sLe~La 488 (940)
.+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+.+..-+... . .+.++|++|+
T Consensus 204 ~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~-~~~~~L~~l~ 281 (349)
T 1zbu_A 204 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-P-RSQTKLTIML 281 (349)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-C-GGGGSHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcC-C-CCCCCHHHHH
Confidence 456777888887641 3689999999999 9854 6777542 578998765433211 1 1148999999
Q ss_pred hc
Q 002293 489 GD 490 (940)
Q Consensus 489 ~~ 490 (940)
+.
T Consensus 282 ~~ 283 (349)
T 1zbu_A 282 EK 283 (349)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 28
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=96.90 E-value=0.0017 Score=65.79 Aligned_cols=81 Identities=9% Similarity=0.034 Sum_probs=50.1
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCC------------------C---------CC
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------D---------GG 420 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~------------------~---------~~ 420 (940)
.+++||+||||+++..++|+. ++....++....++. ....+|.+. + .+
T Consensus 10 ~~vviD~ETTGl~p~~d~Iie----Igav~~~~~~~~~~~-~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 10 RLIWIDLEMTGLDTDRDSIIE----IATIVTDAQLNVLAE-GPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp EEEEEEEEESCSCTTTCCEEE----EEEEEEETTCCEEEE-CCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CEEEEEeECCCCCCCCCccEE----EEEEEEcCCcceecc-CceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 589999999999998888876 222223332101111 112334221 1 12
Q ss_pred hhhhHhhhhhhhcCCC----ceEEEeccHHHHHHHHH
Q 002293 421 GRDLLNEFAPFFEDPS----IKKVWHNYSFDNHVLEN 453 (940)
Q Consensus 421 ~e~~l~~Lk~~Led~~----i~KVgHNaKfDL~~L~r 453 (940)
..+++..|..++++.. ..+|+||+.||+.+|.+
T Consensus 85 ~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~ 121 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121 (194)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHH
Confidence 3456777888887642 24899999999999975
No 29
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=96.82 E-value=0.0014 Score=71.49 Aligned_cols=117 Identities=6% Similarity=-0.051 Sum_probs=67.8
Q ss_pred ceEEEEeccCCCCcccC---ccccCcceeEEEeecC-CCcccCCCceEEEEeCCC---C-------------------Ch
Q 002293 368 LVHACDTEVAKIDVKQE---TPVDHGEVICFSIYSG-PEADFGNGKSCIWVDLLD---G-------------------GG 421 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d---~IvG~g~Ii~LSi~~~-~gIq~g~~~~~~yID~~~---~-------------------~~ 421 (940)
.+|+||+||||+++..+ .|+. ++....+. .+..+.......||.+.. + +.
T Consensus 20 ~~vviD~ETTGl~~~~d~~~eIIE----IgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~ 95 (308)
T 3cg7_A 20 TLLILDFETTSDAANQDYPCEVIQ----FAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTF 95 (308)
T ss_dssp EEEEEEEEECCBTTBCSCCCCEEE----EEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBH
T ss_pred eEEEEEeecCCCCCCCCCCCCeEE----EEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCH
Confidence 47999999999998755 5654 22222221 110000001123443321 1 13
Q ss_pred hhhHhhhhhhhcCCCceEEEecc------HHHH-HHHH----HcCCCCC---CccccHHHHHHhcCCCCC---CCCCCCH
Q 002293 422 RDLLNEFAPFFEDPSIKKVWHNY------SFDN-HVLE----NYGLKVS---GFHADTMHMARLWDSSRR---TEGGYSL 484 (940)
Q Consensus 422 e~~l~~Lk~~Led~~i~KVgHNa------KfDL-~~L~----r~GI~l~---n~vfDTmIAA~LLdp~~~---~~~s~sL 484 (940)
.+++..|..|+.+.. .|+||+ .||+ .+|. ++|+.++ ..++||+-.++.+.+... ..++++|
T Consensus 96 ~evl~~f~~~l~~~~--lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L 173 (308)
T 3cg7_A 96 DVVYEQFQQWLITLG--LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNI 173 (308)
T ss_dssp HHHHHHHHHHHHHHC--CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHH
T ss_pred HHHHHHHHHHHHhCC--cCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCH
Confidence 457777888887643 467887 9999 5774 4688765 347899976664433211 0124789
Q ss_pred HHHHhc
Q 002293 485 EALTGD 490 (940)
Q Consensus 485 e~La~~ 490 (940)
.++++.
T Consensus 174 ~~l~~~ 179 (308)
T 3cg7_A 174 GKMNEY 179 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999965
No 30
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=94.19 E-value=1.4 Score=47.64 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=35.6
Q ss_pred CCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccccHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 002293 434 DPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 434 d~~i~KVgHNaKfDL~~L~r--~GI~l~n--------------~vfDTmIAA~LLdp~~~~~~s~sLe~La~~ 490 (940)
++.+.+|.|+..+|+..|.+ .|-.++. .++||..++.....-. -+|++||+.
T Consensus 148 ~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~-----ggL~~lA~~ 215 (285)
T 4gmj_B 148 CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLK-----GGLQEVAEQ 215 (285)
T ss_dssp CTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCC-----SCHHHHHHH
T ss_pred cCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccC-----ChHHHHHHh
Confidence 56788999999999998755 3434432 3778887777654322 378888864
No 31
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=93.55 E-value=1.1 Score=50.10 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=66.5
Q ss_pred hhhhHhhhhhhhc--CCCceEEEecc-HHHHHHHH----H-cCC---------------------------CCCCc-ccc
Q 002293 421 GRDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLE----N-YGL---------------------------KVSGF-HAD 464 (940)
Q Consensus 421 ~e~~l~~Lk~~Le--d~~i~KVgHNa-KfDL~~L~----r-~GI---------------------------~l~n~-vfD 464 (940)
+.+.+..|..++. ||+ .++|||. .||+..|. . +|+ .+++. ++|
T Consensus 191 E~~LL~~f~~~i~~~dPD-ii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD 269 (388)
T 1noy_A 191 ERDMLMEYINLWEQKRPA-IFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILD 269 (388)
T ss_dssp HHHHHHHHHHHHHHSCCS-EEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECC
T ss_pred HHHHHHHHHHHHHHhCCc-EEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeE
Confidence 3456677777773 565 5788997 79999873 2 342 11222 789
Q ss_pred HHHHHHhcCCC-CCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccc
Q 002293 465 TMHMARLWDSS-RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543 (940)
Q Consensus 465 TmIAA~LLdp~-~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~P 543 (940)
++.+.+-+.-. .. +|+|+++++. +|+..+ .++ . ..+.. .|.
T Consensus 270 ~~~~~k~~~~~~l~---sysL~~Va~~-------~Lg~~K--------~d~-~-~~i~~---------------~~~--- 311 (388)
T 1noy_A 270 YLDLYKKFAFTNLP---SFSLESVAQH-------ETKKGK--------LPY-D-GPINK---------------LRE--- 311 (388)
T ss_dssp HHHHHHHHTCCCCS---CCSHHHHHHH-------HHSCCC--------CCC-S-SCGGG---------------HHH---
T ss_pred HHHHHhhcCcCccc---CCCHHHHHHH-------HhCCCC--------CCc-H-HHHHH---------------HHH---
Confidence 99888764332 33 6999999986 443320 000 0 00000 111
Q ss_pred hhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002293 544 VEELQREERELWISYSAFDSINTLKLYKSL 573 (940)
Q Consensus 544 L~~l~~~~~e~~l~YAA~DA~~tlrLye~L 573 (940)
......+.|+..||..+++|+.++
T Consensus 312 ------~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 312 ------TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 224677899999999999999874
No 32
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=93.55 E-value=0.76 Score=56.05 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=86.2
Q ss_pred ceEEEEeccCC---CCcccCccccCcceeEEEeecCCCcccCCCceEEEE---------eCCCCChhhhHhhhhhhhc--
Q 002293 368 LVHACDTEVAK---IDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDGGGRDLLNEFAPFFE-- 433 (940)
Q Consensus 368 ~~VAfDTETTG---Ld~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yI---------D~~~~~~e~~l~~Lk~~Le-- 433 (940)
..++||+||++ .++..+ .|+++++....+ . .++. ... .++.+.+..|..++.
T Consensus 136 ~ilsfDIEt~~~~~p~~~~d------~Ii~Is~~~~~~------~-~~~t~~~i~~~~v~~~-~~E~~LL~~f~~~i~~~ 201 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTG------PILMISYADGSE------A-RVITWKKIDLPYVDVV-STEKEMIKRFLRVVREK 201 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCS------CEEEEEEECSSC------E-EEEESSCCCCSSEEEC-SCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCCCCCCCCCC------cEEEEEEEecCC------C-eeEeeccccccceEEc-CCHHHHHHHHHHHHHhc
Confidence 58999999998 333333 345666543221 1 1111 000 123456667777665
Q ss_pred CCCceEEEecc-HHHHHHHH----HcCCCCC----------------------C-ccccHHHHHHhcCCCCCCCCCCCHH
Q 002293 434 DPSIKKVWHNY-SFDNHVLE----NYGLKVS----------------------G-FHADTMHMARLWDSSRRTEGGYSLE 485 (940)
Q Consensus 434 d~~i~KVgHNa-KfDL~~L~----r~GI~l~----------------------n-~vfDTmIAA~LLdp~~~~~~s~sLe 485 (940)
||+ ..|+||. .||+.+|. .+|+.+. + .++|++...+-.. ... +++|+
T Consensus 202 dPD-iivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~---sysL~ 276 (775)
T 1qht_A 202 DPD-VLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLP---TYTLE 276 (775)
T ss_dssp CCS-EEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCS---CCCHH
T ss_pred CCC-EEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcC---cCCHH
Confidence 555 5899996 69999984 2566531 2 3679887665432 223 69999
Q ss_pred HHHhccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccchhHhhHhhHHHHHHHHHHHHHH
Q 002293 486 ALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSIN 565 (940)
Q Consensus 486 ~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~PL~~l~~~~~e~~l~YAA~DA~~ 565 (940)
++++. +||..+ +++ ....+..+| ...+ .....+.|+..||..
T Consensus 277 ~Va~~-------~Lg~~K--------~dv-~~~~i~~~~---------------~~~~-------~l~~l~~Y~~~Da~l 318 (775)
T 1qht_A 277 AVYEA-------VFGKPK--------EKV-YAEEIAQAW---------------ESGE-------GLERVARYSMEDAKV 318 (775)
T ss_dssp HHHHH-------HHCCCC--------CCC-CHHHHHHHH---------------TTTC-------SHHHHHHHHHHHHHH
T ss_pred HHHHH-------HhCCCC--------Ccc-CHHHHHHHH---------------hcCc-------cHHHHHHHHHHHHHH
Confidence 99986 454320 111 000111122 1111 025678999999999
Q ss_pred HHHHHHHHHH
Q 002293 566 TLKLYKSLKK 575 (940)
Q Consensus 566 tlrLye~L~~ 575 (940)
+++|+..+..
T Consensus 319 t~~L~~~~~~ 328 (775)
T 1qht_A 319 TYELGREFFP 328 (775)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhH
Confidence 9999876543
No 33
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=92.39 E-value=0.21 Score=62.17 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHhcchHHHHHHHhHcC---cccCH---HHHHH
Q 002293 553 ELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEG---MLVDR---EYLSE 626 (940)
Q Consensus 553 e~~l~YAA~DA~~tlrLye~L~~~Lee~~~~~~~~~~~~~~l~~Ly~~IEmPL~~VLa~ME~~G---I~VD~---E~L~e 626 (940)
.....|+|.||.+|.++|..+.+...+. | -+|+ .++.|-.-| .+||. .|+++
T Consensus 323 q~Lm~YCA~DV~aTh~V~~kl~P~F~er------c--------------PHPV--sfAgml~mgs~~LPVn~~W~~Yi~~ 380 (1172)
T 3ikm_A 323 QDLMQYCAQDVWATHEVFQQQLPLFLER------C--------------PHPV--TLAGMLEMGVSYLPVNQNWERYLAE 380 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT------S--------------CCSH--HHHHHHHHHSCCCCCCTHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh------C--------------CCch--hHHHHHHhCCccccCCccHHHHHHH
Confidence 5678999999999999999999986652 2 2233 344444444 78884 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002293 627 IEKVARAEQEAAVNRFRKWA 646 (940)
Q Consensus 627 l~~~l~~e~e~le~ei~~~a 646 (940)
....++.-..++++.+..+|
T Consensus 381 ae~~Y~~~~~ev~~~L~~lA 400 (1172)
T 3ikm_A 381 AQGTYEELQREMKKSLMDLA 400 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 34
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=90.29 E-value=3.5 Score=51.14 Aligned_cols=107 Identities=20% Similarity=0.352 Sum_probs=65.8
Q ss_pred hhhhHhhhhhhhc--CCCceEEEecc-HHHHHHHH----H-cCCC---------------------------CCCc-ccc
Q 002293 421 GRDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLE----N-YGLK---------------------------VSGF-HAD 464 (940)
Q Consensus 421 ~e~~l~~Lk~~Le--d~~i~KVgHNa-KfDL~~L~----r-~GI~---------------------------l~n~-vfD 464 (940)
+.+.+..|..++. ||. .++|||. .||+..|. + +|+. +.+. ++|
T Consensus 194 E~eLL~~F~~~I~~~DPD-IItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lD 272 (903)
T 3qex_A 194 EKELLMEYLNFWQQKTPV-ILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLD 272 (903)
T ss_dssp HHHHHHHHHHHHHHTCCS-EEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHHHHHhCCC-EEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEee
Confidence 3456667777765 666 4678996 69999883 2 3642 1222 679
Q ss_pred HHHHHHhcC-CCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCccccccc
Q 002293 465 TMHMARLWD-SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543 (940)
Q Consensus 465 TmIAA~LLd-p~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~dw~~~P 543 (940)
++-+.+-.. .... +|+|+++++. +|+..+ +++ . ..
T Consensus 273 l~~~~k~~~~~~l~---SYsLd~VA~~-------lLg~~K--------~d~----------~-------------~~--- 308 (903)
T 3qex_A 273 YIDLYKKFSFTNQP---SYSLDYISEF-------ELNVGK--------LKY----------D-------------GP--- 308 (903)
T ss_dssp HHHHHHHHSCCCCS---CCCHHHHHHH-------HHCCCC--------CCC----------S-------------SC---
T ss_pred HHHHHHHhCccCcC---CCCHHHHHHH-------HcCCCc--------ccc----------H-------------HH---
Confidence 887776532 2233 6999999987 443320 010 0 00
Q ss_pred hhHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002293 544 VEELQREERELWISYSAFDSINTLKLYKS 572 (940)
Q Consensus 544 L~~l~~~~~e~~l~YAA~DA~~tlrLye~ 572 (940)
+..+.+......+.|+..||..+++|+.+
T Consensus 309 I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 309 ISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111223466789999999999999986
No 35
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=87.38 E-value=12 Score=46.07 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.0
Q ss_pred hhhhHhhhhhhhcCCCceEEEecc-HHHHHHHH----HcCCC
Q 002293 421 GRDLLNEFAPFFEDPSIKKVWHNY-SFDNHVLE----NYGLK 457 (940)
Q Consensus 421 ~e~~l~~Lk~~Led~~i~KVgHNa-KfDL~~L~----r~GI~ 457 (940)
+.+.+..|..++.+.. ..|+||. .||+.+|. ++|+.
T Consensus 257 E~~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~ 297 (847)
T 1s5j_A 257 EYELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYF 297 (847)
T ss_dssp HHHHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCC
Confidence 4567888888888876 6899996 69999984 26764
No 36
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=86.59 E-value=25 Score=37.31 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=36.7
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccccHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 002293 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 433 ed~~i~KVgHNaKfDL~~L~r--~GI~l~n--------------~vfDTmIAA~LLdp~~~~~~s~sLe~La~~ 490 (940)
-++.+.||.|+..+|...|.+ .|-.++. .++||..++..... . .-+|+.|++.
T Consensus 137 l~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~-l----~~gL~~la~~ 205 (252)
T 2d5r_A 137 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN-L----KGGLQEVAEQ 205 (252)
T ss_dssp SSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT-C----CSSHHHHHHH
T ss_pred cCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc-c----CCCHHHHHHH
Confidence 345689999999999988754 3444442 36788888877653 2 1478888864
No 37
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=83.66 E-value=42 Score=37.14 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=36.5
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccccHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 002293 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 433 ed~~i~KVgHNaKfDL~~L~r--~GI~l~n--------------~vfDTmIAA~LLdp~~~~~~s~sLe~La~~ 490 (940)
-+..+.||.++..+|...|.+ .|-.++. .++||..++..+.. .. -+|..|++.
T Consensus 158 l~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~-l~----ggL~~lA~~ 226 (333)
T 2p51_A 158 LQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLN-NS----KGLQDIADD 226 (333)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTC-CC----CCHHHHHHH
T ss_pred cCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc-cc----CCHHHHHHH
Confidence 345689999999999988754 3444432 36788888877653 22 378888864
No 38
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=82.47 E-value=14 Score=45.12 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=41.6
Q ss_pred hhhhHhhhhhhhc--CCCceEEEecc-HHHHHHHHH----cCCCC-------------------------CC-ccccHHH
Q 002293 421 GRDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLEN----YGLKV-------------------------SG-FHADTMH 467 (940)
Q Consensus 421 ~e~~l~~Lk~~Le--d~~i~KVgHNa-KfDL~~L~r----~GI~l-------------------------~n-~vfDTmI 467 (940)
+.+.+..|..++. ||+ ..++||. .||+..|.+ +|+.+ .+ .++|.+-
T Consensus 204 E~~lL~~f~~~i~~~dPD-ii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~ 282 (786)
T 3k59_A 204 RPQLLEKLNAWFANYDPD-VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIE 282 (786)
T ss_dssp HHHHHHHHHHHHHHHCCS-EEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHH
T ss_pred HHHHHHHHHHHHHHcCCC-EEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHH
Confidence 3456666666665 555 5799996 599999842 45432 11 1567665
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhc
Q 002293 468 MARLWDSSRRTEGGYSLEALTGD 490 (940)
Q Consensus 468 AA~LLdp~~~~~~s~sLe~La~~ 490 (940)
+.+-...... +|+|+++++.
T Consensus 283 ~lk~~~~~l~---SysL~~Va~~ 302 (786)
T 3k59_A 283 ALKSAFWNFS---SFSLETVAQE 302 (786)
T ss_dssp HHHHTTCCCS---CCSHHHHHHH
T ss_pred HHHhccCCCC---CCCHHHHHHH
Confidence 5553222333 7999999987
No 39
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=79.54 E-value=21 Score=44.42 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=65.6
Q ss_pred hhhhHhhhhhhhc--CCCceEEEecc-HHHHHHHH----HcCCCC----------------------------------C
Q 002293 421 GRDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLE----NYGLKV----------------------------------S 459 (940)
Q Consensus 421 ~e~~l~~Lk~~Le--d~~i~KVgHNa-KfDL~~L~----r~GI~l----------------------------------~ 459 (940)
+.+.+..|..++. ||++ +++||. .||+..|. .+|+.. .
T Consensus 313 E~eLL~~F~~~i~~~DPDI-IvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 391 (919)
T 3iay_A 313 EEEMLSNWRNFIIKVDPDV-IIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNID 391 (919)
T ss_dssp HHHHHHHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCT
T ss_pred HHHHHHHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEc
Confidence 4566777777764 5664 789997 69999983 245541 1
Q ss_pred C-ccccHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhhccccCCCCccccccccchhhhhcccccccCCCCCcc
Q 002293 460 G-FHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538 (940)
Q Consensus 460 n-~vfDTmIAA~LLdp~~~~~~s~sLe~La~~y~~~~e~yLg~~~~l~k~~s~eELvGk~s~kelfGK~k~kkd~s~~~d 538 (940)
+ .++|++-...-.. ... +|+|+++++. +|+..+ +++-+ ..+.+++.
T Consensus 392 GR~~lDl~~~~k~~~-~l~---sysL~~Va~~-------~Lg~~K--------~dv~~-~~I~~l~~------------- 438 (919)
T 3iay_A 392 GRLQLDLLQFIQREY-KLR---SYTLNAVSAH-------FLGEQK--------EDVHY-SIISDLQN------------- 438 (919)
T ss_dssp TCEEEEHHHHHHHHC-CCS---CCCHHHHHHH-------HHCCC---------------CCHHHHHT-------------
T ss_pred CeEEEEhHHHHHhhc-CCC---CCCHHHHHHH-------hcccCC--------CCCCH-HHHHHHHh-------------
Confidence 1 2568887765322 222 6999999987 444320 11100 01111221
Q ss_pred ccccchhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002293 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (940)
Q Consensus 539 w~~~PL~~l~~~~~e~~l~YAA~DA~~tlrLye~L 573 (940)
..+ ......+.|+..||..+++|+.++
T Consensus 439 --~~~------~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 439 --GDS------ETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp --SCH------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cCh------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 113567899999999999999875
No 40
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=57.83 E-value=10 Score=44.62 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=38.0
Q ss_pred ceEEEEeccCCCCcccCccccCcceeEEEeecCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 002293 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (940)
Q Consensus 368 ~~VAfDTETTGLd~~~d~IvG~g~Ii~LSi~~~~gIq~g~~~~~~yID~~~~~~e~~l~~Lk~~Led~~i~KVgHNaKfD 447 (940)
..+++|+||+. +..... +.++++.++.. ...+|.+. .+..|..++.+.....++||++||
T Consensus 7 ~i~~~D~Et~~-d~~~~~------~~~i~~~~~~~------~~~~~~~~-------~l~~fi~~~~~~~~~i~~hNl~FD 66 (575)
T 2py5_A 7 KMYSCAFETTT-KVEDCR------VWAYGYMNIED------HSEYKIGN-------SLDEFMAWVLKVQADLYFHNLKFA 66 (575)
T ss_dssp CEEEEEEEECC-BTTBCC------EEEEEEEESSC------TTCEEEES-------CHHHHHHHHHHHCCEEEETTHHHH
T ss_pred eEEEEEEEeec-CCCCCc------eEEEEEEeCCc------eEEEEech-------hHHHHHHHHHHcCCEEEEEChhhh
Confidence 48999999964 333322 24455554321 22355432 133344445444456889999999
Q ss_pred HHHHH
Q 002293 448 NHVLE 452 (940)
Q Consensus 448 L~~L~ 452 (940)
..+|.
T Consensus 67 ~~~l~ 71 (575)
T 2py5_A 67 GAFII 71 (575)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 41
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=43.71 E-value=66 Score=41.23 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002293 553 ELWISYSAFDSINTLKLYKSLKK 575 (940)
Q Consensus 553 e~~l~YAA~DA~~tlrLye~L~~ 575 (940)
.....|+..|+..+++|+.++..
T Consensus 530 ~~L~~Ycl~Da~lt~~L~~kl~~ 552 (1193)
T 2gv9_A 530 GVIGEYCIQDSLLVGQLFFKFLP 552 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999987743
No 42
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=34.40 E-value=53 Score=33.46 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=21.9
Q ss_pred hhhHhhhhhhhcC---CCceEEEeccHHHHHHHHH
Q 002293 422 RDLLNEFAPFFED---PSIKKVWHNYSFDNHVLEN 453 (940)
Q Consensus 422 e~~l~~Lk~~Led---~~i~KVgHNaKfDL~~L~r 453 (940)
.++...|..||.. +.+.++++++.||..+|.+
T Consensus 89 ~~i~~~L~~FL~~~~~~~~eLwa~~~~yD~~~L~q 123 (190)
T 4hec_A 89 QQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALCQ 123 (190)
T ss_dssp HHHHHHHHHHTTTTSSCEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccccHHHHHH
Confidence 4566677777753 2345678888888888865
Done!