Query 002296
Match_columns 940
No_of_seqs 167 out of 1770
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 9E-216 3E-220 1985.7 25.2 848 9-917 24-1031(1210)
2 1twf_B DNA-directed RNA polyme 100.0 2E-208 7E-213 1942.2 63.7 847 9-917 37-1042(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 3E-186 1E-190 1752.5 60.0 833 9-917 20-943 (1131)
4 2a6h_C DNA-directed RNA polyme 100.0 8E-163 3E-167 1499.7 40.8 729 7-917 10-901 (1119)
5 3lu0_C DNA-directed RNA polyme 100.0 2E-148 8E-153 1354.5 30.1 765 8-924 20-1135(1342)
6 3mlq_A DNA-directed RNA polyme 99.9 2.1E-23 7E-28 211.8 6.6 89 14-127 2-132 (188)
7 3lti_A DNA-directed RNA polyme 98.8 2E-08 6.8E-13 108.1 12.3 163 138-311 21-296 (296)
8 3tbi_B DNA-directed RNA polyme 98.6 6E-08 2E-12 99.8 8.3 68 763-830 18-108 (228)
9 3mlq_A DNA-directed RNA polyme 90.9 0.25 8.7E-06 50.0 5.6 64 316-391 121-184 (188)
10 3g43_E Voltage-dependent L-typ 23.6 15 0.00051 31.8 -0.3 34 884-928 47-80 (81)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-216 Score=1985.67 Aligned_cols=848 Identities=27% Similarity=0.389 Sum_probs=738.9
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HH
Q 002296 9 FEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------------------DH 37 (940)
Q Consensus 9 ~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------------------~e 37 (940)
++..++||+|||||||+|+++||++|+ +|
T Consensus 24 ff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~~e~d~~~~~l~P~E 103 (1210)
T 3h0g_B 24 FFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQE 103 (1210)
T ss_dssp HHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCCBCTTSCBCCCCTTT
T ss_pred HhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCceecCCCcccccCHHH
Confidence 345789999999999999999999876 79
Q ss_pred HHHcCCeeeeEEEEEEEEEEecCC----------C-----ceEeeEEeecccceeecCCCccCCCCChHHHHhccccccc
Q 002296 38 CRQAKISYTGKLMADVEFQYLDAG----------S-----PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAE 102 (940)
Q Consensus 38 cR~r~~TYsa~l~v~i~~~~~~~~----------~-----~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D 102 (940)
||+|++||+|||+|+|++.++... . .....++.||+|||||||++|||++++++||++.||||+|
T Consensus 104 cRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~s~~eL~~~gEcp~D 183 (1210)
T 3h0g_B 104 ARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYD 183 (1210)
T ss_dssp TTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSCCHHHHHHTTCCTTC
T ss_pred HHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCCCHHHHHhcCCCCCC
Confidence 999999999999999999876211 0 1123579999999999999999999999999999999999
Q ss_pred CCcEEEEcCceeEEEEEEeccCCccEEEEeccccCCCCcceeeEEEEEeeecCCCce--EEEEEEEe------CCeEEEE
Q 002296 103 MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLL------NGSVRLG 174 (940)
Q Consensus 103 ~GGYFIInG~EKVIr~qi~~~~N~~~~~~r~~~~~~~~~~t~~~v~~rs~~~~~~s~--~~~l~y~~------~g~~~l~ 174 (940)
+||||||||+||||++|+..++|+|+++. +++..|+.+++.+||+++++++. +++++|.. ++.+.++
T Consensus 184 ~GGYFIING~EKVII~qerla~N~~iv~~-----~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~~~~~~i~~~ 258 (1210)
T 3h0g_B 184 QGGYFIINGSEKVIIAQERSAANIVQVFK-----KAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRAT 258 (1210)
T ss_dssp CCCCBCGGGSCBCCCBCBCCCCSCCCCCC-----CCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTTSCSCCCCCC
T ss_pred CCCEEEEeCEEEEEEechhhccceEEEEe-----ecCCCCceEEEEEEEEecCCccceeEEEEEEEeccccCCCceEEEE
Confidence 99999999999999999888899998753 35667888999999999876533 33444433 5677777
Q ss_pred EEeecccccccHhhHHHhccCCCHHHHHHHhcccccchhhcccCCCCChhhHHHHHHHHHHHHhcccccHHHHHHHHhcc
Q 002296 175 FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH 254 (940)
Q Consensus 175 ~~~~~~~~~IPi~ilLkALg~~sD~eI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~i~t~~~al~yig~~ 254 (940)
|.+.+. +||+++||||||.+||+||++.|+. +..+..+.+.+..+++++. .++|+++||+|||++
T Consensus 259 ~~~~~~--~IPi~ivlkALg~~sD~EI~~~I~~-----------~~~d~~~~~~l~~slee~~--~i~tq~~aL~yIG~r 323 (1210)
T 3h0g_B 259 LPYIRS--DIPIVIVFRALGVVPDRDILEHICY-----------DPNDFQMLEMMKPCIEEAF--VIQDKDIALDYIGKR 323 (1210)
T ss_dssp CTTSCS--CCCSHHHHTTTTCCSTTHHHHHHCC-----------SSCCHHHHHTHHHHHHTTS--SCCSSHHHHHTTCCC
T ss_pred Eecccc--CCcHHHHHHHcCCCCHHHHHHHHhC-----------CCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHh
Confidence 777654 6999999999999999999999972 2234555666666666543 489999999999999
Q ss_pred ccccccCCCCccHHHHHHHHHHhHhccCCCCC----cchHHHHHHHHHHHHHhcCCCCCCCCccccccceecccchhHHH
Q 002296 255 FQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330 (940)
Q Consensus 255 fr~~~~~~~~~~~~~~~~~~L~~~ll~Hl~~~----~~K~~~L~~MirkLl~~~~g~~~~Dd~D~l~NkRv~l~G~Ll~~ 330 (940)
|+.. ..++.+++++|+++|+++|||||+.. .+||.||++|+|||++++.|++.+||+|||+||||+|+|+||+.
T Consensus 324 ~~~~--~~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~ 401 (1210)
T 3h0g_B 324 GSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLAS 401 (1210)
T ss_dssp SSSC--CCCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHH
T ss_pred cccc--CCCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHH
Confidence 9853 23566788999999999999999954 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEcc
Q 002296 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410 (940)
Q Consensus 331 lf~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvle 410 (940)
+||+.|+++++++++.+++.+.+ ++.+++. .+++ ++.||++|++|||||||+++.+ +++|++||||||+
T Consensus 402 lfr~~~~~~~~~i~~~l~k~~~~-~~~~~~~------~~i~---~~~It~~l~~~laTGNW~~~kk-~~~~~sGvsqvl~ 470 (1210)
T 3h0g_B 402 LFRMLFRKMTRDVYKYMQKCVET-NREFNLT------LAVK---SNIITNGLRYSLATGNWGDQKR-SMVNRVGVSQVLN 470 (1210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCSCCCT------TSSC---STTTSHHHHHHHSSSCSSTTSS-CCSCCCCSCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCccCHH------Hhcc---hhhhHHHHHHHhhcCCcccccc-cccCcCCEEEEcc
Confidence 99999999999999999998876 4444431 2332 4589999999999999998765 4689999999999
Q ss_pred ccchHHHhhhhcccccCCcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccchhhH
Q 002296 411 RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490 (940)
Q Consensus 411 Rln~~~~lSh~Rrv~rg~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~~~ 490 (940)
|+||+|+|||||||+ +++++++|+++||+||||||||+||+|||||++||||||||++|+||++.+.+
T Consensus 471 R~n~~s~lShlRrv~-~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~----------- 538 (1210)
T 3h0g_B 471 RYTFASTLSHLRRTN-TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA----------- 538 (1210)
T ss_dssp CSSHHHHHHHTTBBC-CSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSS-----------
T ss_pred cCCHHHHHHHHHhcc-CchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcH-----------
Confidence 999999999999997 67889999999999999999999999999999999999999999999987766
Q ss_pred HHHHHHHhCCCeecCCccccCCCCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCCCCC
Q 002296 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYP 570 (940)
Q Consensus 491 ~i~~~L~~~g~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~~ 570 (940)
.|.++|.++||+++. +......++.++|||||+|+|++ .+|..|++.||.|||+| .|+.+++|++ +...+
T Consensus 539 pI~~~l~~~gme~le-~~~~~~~~~~tkVfvNG~wVGvh--~dp~~Lv~~lR~lRR~g--~Is~eVSIvr-----dir~r 608 (1210)
T 3h0g_B 539 PIIEFLEEWGLETLE-DYNPSASPNATKVFVNGVWLGVH--RDPAHLTETLRSLRRRL--DISAEVSIVR-----DIREK 608 (1210)
T ss_dssp HHHHHHHSSSCCCCS-CCCSSSSSSSCCCCSTTCCCCCC--SCHHHHHHHHHHHHTTT--SSCTTCCCCC-----CTTTC
T ss_pred HHHHHHHHhCCcchh-hcCcccCCCceEEEECCEEEEEe--CCHHHHHHHHHHHhhcC--CCCCceEEEe-----cCCCC
Confidence 599999999999873 34444556789999999999995 67999999999999998 6888888753 34578
Q ss_pred ceEEecCCCceeceEEeccCC-------CC-------------------------------CCCceeeecccceeeeeee
Q 002296 571 GLYLFTSPPKFVRPVRNISLP-------SE-------------------------------ESQNIELIGPFEQVFMEIR 612 (940)
Q Consensus 571 ~i~i~~d~gR~~RPv~~~~~~-------~~-------------------------------~~~~iE~i~~~Eq~~~~Ia 612 (940)
+++||||+||+||||++|+++ +. ..|.|||||++||++++||
T Consensus 609 E~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l~k~hi~~L~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mIa 688 (1210)
T 3h0g_B 609 ELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIA 688 (1210)
T ss_dssp CCCCCCSSCCBCCEEEECCCSSCSSSSCCCSSCHHHHHHHHHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCEE
T ss_pred eEEEecCCCcccceEEEEccCCcccccccccccHHHHHHHhcccccccccccccCCHHHHHhCCCEEEecHhhhhceeEE
Confidence 999999999999999998764 11 2478999999999999999
Q ss_pred cCCCCCCC----------------C--------CCCccceecccCCCccccceeecccCCCCCCCccchhhccccccccc
Q 002296 613 CPDGGDGG----------------R--------RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668 (940)
Q Consensus 613 ~~~~~~~~----------------~--------~~~~~~th~EI~p~~ilsv~AslIPF~~HNqspRn~yq~~M~KQaig 668 (940)
++++|+.. . .....||||||||++|||+|||+||||||||||||||||||+|||||
T Consensus 689 mtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~~~~~~~~THcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~aMgKQamG 768 (1210)
T 3h0g_B 689 MSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMG 768 (1210)
T ss_dssp SCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCSCCSCCSCSEECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHHHHTTCCS
T ss_pred ecHHHhhhhhhhhccccccccccchhhccccCCCcccccccccccchhhhhheeecccCccccccchhhhhhhhhccccc
Confidence 99988732 0 01245899999999999999999999999999999999999999999
Q ss_pred ccceeEEEeccCceeeccCCCeeeEeccceeecCCCCCCCCceeEEEEEeccCCCCCceEEEecchhccCcceeeEEEEE
Q 002296 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748 (940)
Q Consensus 669 ~~~~n~~~R~d~~~y~L~~~Q~Plv~t~~~~~~~~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~rG~~~~~~~~~~ 748 (940)
++++|+..|+||++|+|+|||+|||+|+.++.++++++|+|+||+||||||+||||||||||||+|+||||||+++|++|
T Consensus 769 ~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~~~~elp~G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~y 848 (1210)
T 3h0g_B 769 VYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTY 848 (1210)
T ss_dssp CCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTTTCTTSCSCCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEE
T ss_pred ccccccccccCccccEeecCcCccccchhHHHhCCCcccCccceEEEEeccCCCChhhheeeehhheecCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCcCccceeeccCCCC------hhhhcccCCCCCcccCcEecCCCcEEEEeecCC--------------CcE
Q 002296 749 TIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--------------NSW 808 (940)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~--------------~~~ 808 (940)
.++.... .....+.|..|+.. ...+++||+||||+||++|++|||||||.+|+. .++
T Consensus 849 ~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~~~~~~~~~rd 925 (1210)
T 3h0g_B 849 TDQEKKI---GMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRD 925 (1210)
T ss_dssp EECCCCC---SSSCCCCCCCCCTTSCCSCCSCCGGGCCTTSSCCTTCCCCTTCCCCCCCCCC-----------CCCCCCC
T ss_pred EEEeeec---CCCceeEEcCCCcchhcccchhhHhhcCCCCCcCCCCEecCCCEEEEEecCCCCCchhhcccccccccce
Confidence 8864221 11235567777543 235799999999999999999999999987642 234
Q ss_pred EEeeccCCCcEEEEEEEEEecCCCCCceEEEEEEeeecCCCcccceeccCCCccEEeeeecCCCcCccCCCCCcCcEEeC
Q 002296 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888 (940)
Q Consensus 809 ~~~~~~~~e~g~V~~v~~~~~~~~~~~~~v~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dMPf~~~~G~~pDiI~N 888 (940)
.+++++++|+|+||+|.++.+++| .+.|+|++|+.|.|++|||||||||||||||+|||+|||||+ +||++||||||
T Consensus 926 ~s~~~~~~e~g~Vd~V~~~~~~~g--~~~vkv~~~~~R~~~~GDK~a~RhGqKGvi~~i~~~edmPf~-~~G~~pDii~N 1002 (1210)
T 3h0g_B 926 VSTPLRSTESGIVDQVMVTTNQEG--LKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFS-AQGIVPDIIIN 1002 (1210)
T ss_dssp CCCCCCTTCCCCCCEEEEEECSSS--SEEEEEEECCCBCCCTTCEEECTTCCCEEEEEEECTTTSCCB-TTTBCCSEECC
T ss_pred eeEEecCCCCeEEEEEEEEEecCC--CeEEEEEEEEecCCCchhhhhcccCCCceeeEEeccccCCcC-CCCCCCeEEEC
Confidence 588999999999999999988764 588999999999999999999999999999999999999999 99999999999
Q ss_pred CCCccccccHHHHHHHHHHHHHhhchhHH
Q 002296 889 PHAFPSRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 889 Ph~~PSRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
|||||||||||||+|+++||+|++.|.+.
T Consensus 1003 P~~~PSRMtigq~~E~~~g~~~~~~g~~~ 1031 (1210)
T 3h0g_B 1003 PHAIPSRMTVAHLVECQLSKVSALSGFEG 1031 (1210)
T ss_dssp GGGSTTSCCHHHHHHHHHHHHSSSSCCCC
T ss_pred CCcCCCCccchhhhHhHHHHHHHhcCCce
Confidence 99999999999999999999999999753
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=2e-208 Score=1942.17 Aligned_cols=847 Identities=27% Similarity=0.397 Sum_probs=724.4
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HH
Q 002296 9 FEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------------------DH 37 (940)
Q Consensus 9 ~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------------------~e 37 (940)
+..+++|++|||+|||||+++||++++ +|
T Consensus 37 ~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~~e~~~~~~~l~P~E 116 (1224)
T 1twf_B 37 FFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQE 116 (1224)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEECCSSSCCEECCHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCceeccCCccccCCHHH
Confidence 345899999999999999999998887 56
Q ss_pred HHHcCCeeeeEEEEEEEEEEecCCCc---------------eE--eeEEeecccceeecCCCccCCCCChHHHHhccccc
Q 002296 38 CRQAKISYTGKLMADVEFQYLDAGSP---------------VV--RERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEA 100 (940)
Q Consensus 38 cR~r~~TYsa~l~v~i~~~~~~~~~~---------------~~--~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~ 100 (940)
||+|++||+|||+|+|++.+...+.. .+ .++|++|+|||||||++|||++++++||++.||||
T Consensus 117 cRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~~~s~~el~~~gEcp 196 (1224)
T 1twf_B 117 ARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196 (1224)
T ss_dssp HHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGGTCCHHHHHHTTCCT
T ss_pred HhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCCCCCHHHHHhhccCc
Confidence 99999999999999996543111111 11 34699999999999999999999999999999999
Q ss_pred ccCCcEEEEcCceeEEEEEEeccCCccEEEEeccccCCCCcceeeEEEEEeeecC--CCceEEEEEEEe-----CCeEEE
Q 002296 101 AEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD--QSSVTLKLYYLL-----NGSVRL 173 (940)
Q Consensus 101 ~D~GGYFIInG~EKVIr~qi~~~~N~~~~~~r~~~~~~~~~~t~~~v~~rs~~~~--~~s~~~~l~y~~-----~g~~~l 173 (940)
+|+||||||||+||||++|+++++|+|+++.. ++..++.|++.+||+.++ .++.|++++|++ +|.+|+
T Consensus 197 ~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~-----~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~~~~~~~i~v 271 (1224)
T 1twf_B 197 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKK-----AAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKA 271 (1224)
T ss_dssp TCCCCSEEETTEEEEECEEEEECSSCCEEEEC-----CTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCSSCSSCCEEE
T ss_pred cCCCCEEEEeCcEEEEEEeeeccCCeEEEEec-----cCCCcceEEEEEEEEeccCCcceeEEEEEEeccccCCCCEEEE
Confidence 99999999999999999999999999988743 455677899999998776 567899999998 899999
Q ss_pred EEEeecccccccHhhHHHhccCCCHHHHHHHhcccccchhhcccCCCCChhhHHHHHHHHHHHHhcccccHHHHHHHHhc
Q 002296 174 GFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253 (940)
Q Consensus 174 ~~~~~~~~~~IPi~ilLkALg~~sD~eI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~i~t~~~al~yig~ 253 (940)
+|+..++ +||+++||||||..||+||++.|+. + .+++.+.+.+..+|++.. .++|+++||.|||+
T Consensus 272 r~~~~k~--~IPi~illkALG~~sD~eI~~~i~~----------~-~~d~~~~~~l~~~l~e~~--~~~t~~~AL~yIg~ 336 (1224)
T 1twf_B 272 TLPYIKQ--DIPIVIIFRALGIIPDGEILEHICY----------D-VNDWQMLEMLKPCVEDGF--VIQDRETALDFIGR 336 (1224)
T ss_dssp ECTTCSS--CEEHHHHHHHTTCCSHHHHHHHHCC----------C-TTCHHHHHHHHHHHHHTT--TCCSHHHHHHHHHH
T ss_pred EEecccc--cccHHHHHHHhcCCCHHHHHHHhcc----------c-CCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHH
Confidence 9987654 5999999999999999999999972 1 234566677777776643 47899999999999
Q ss_pred c-ccccccCCCCccHHHHHHHHHHhHhccCCCCC----cchHHHHHHHHHHHHHhcCCCCCCCCccccccceecccchhH
Q 002296 254 H-FQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328 (940)
Q Consensus 254 ~-fr~~~~~~~~~~~~~~~~~~L~~~ll~Hl~~~----~~K~~~L~~MirkLl~~~~g~~~~Dd~D~l~NkRv~l~G~Ll 328 (940)
+ +++. .++.++.+.|+.+|++++|||++.. ..|++||++|+|||+.++.|.+.+||+|||+||||+++|+||
T Consensus 337 r~~~~g---~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll 413 (1224)
T 1twf_B 337 RGTALG---IKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLL 413 (1224)
T ss_dssp TTSCTT---SCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHH
T ss_pred hhccCC---CCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHH
Confidence 9 6542 2356778999999999999999964 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEE
Q 002296 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408 (940)
Q Consensus 329 ~~lf~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqv 408 (940)
+.+||+.|+++.+.+++.+++.+.+ ++.++ ++.++ +++.||++|++|||||||+++. .++++++||||+
T Consensus 414 ~~lfr~~~~r~~~~i~~~l~~~~~~-~~~~~------~~~~i---~~~~It~~lk~~~aTGNw~~~k-~~~~~~sGvSQv 482 (1224)
T 1twf_B 414 AQLFKTLFKKLTKDIFRYMQRTVEE-AHDFN------MKLAI---NAKTITSGLKYALATGNWGEQK-KAMSSRAGVSQV 482 (1224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC---------------CCC---CTHHHHHHHHHHHHHCCCC----------CCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-ccccc------hhhhh---cccchhhcchhheeeccccccc-cccccccceeEe
Confidence 9999999999999888887654332 22121 22233 3468999999999999998876 578999999999
Q ss_pred ccccchHHHhhhhcccccCCcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccchh
Q 002296 409 AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488 (940)
Q Consensus 409 leRln~~~~lSh~Rrv~rg~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~ 488 (940)
|+|+||+|+||||||+|+ ++++++|+++||+||||||||+||+|||||++||||||||+||+||++.+.+
T Consensus 483 ldr~n~ls~LSH~RRi~~-~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~--------- 552 (1224)
T 1twf_B 483 LNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM--------- 552 (1224)
T ss_dssp CCCSSHHHHHHHHTEEEC-CC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCH---------
T ss_pred ecccchhhhhhhhhcccc-cccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHH---------
Confidence 999999999999999998 5789999999999999999999999999999999999999999999886544
Q ss_pred hHHHHHHHHhCCCeecCCccccCCCCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCCC
Q 002296 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568 (940)
Q Consensus 489 ~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~ 568 (940)
.|.++|.++||+++. +......++.++|||||+|+|++ .+|..+++.||.+||.+ .|+.+++|+++ ..
T Consensus 553 --pi~~~l~~~G~~~l~-e~~~~~~~~~~kVfvnG~~vG~~--~~p~~lv~~lr~lRR~g--~i~~evsiv~d-----~r 620 (1224)
T 1twf_B 553 --PIITFLSEWGMEPLE-DYVPHQSPDATRVFVNGVWHGVH--RNPARLMETLRTLRRKG--DINPEVSMIRD-----IR 620 (1224)
T ss_dssp --HHHHHHHHTTCEEGG-GCCGGGCTTCEEEEETTEEEEEE--SCHHHHHHHHHHHHHHT--SSCTTCEEEEE-----TT
T ss_pred --HHHHHHHHcCCccee-ecccccCCCceEEEECCEEEEEe--CCHHHHHHHHHHHHhcc--CCCCeEEEEEe-----cc
Confidence 599999999999863 23333335679999999999996 67899999999999998 68999998876 34
Q ss_pred CCceEEecCCCceeceEEeccCCC------C----------------------------------CCCceeeecccceee
Q 002296 569 YPGLYLFTSPPKFVRPVRNISLPS------E----------------------------------ESQNIELIGPFEQVF 608 (940)
Q Consensus 569 ~~~i~i~~d~gR~~RPv~~~~~~~------~----------------------------------~~~~iE~i~~~Eq~~ 608 (940)
.++++||||+||++|||++|+++. . ..|.|||+|++||++
T Consensus 621 ~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~l~k~hi~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe~ 700 (1224)
T 1twf_B 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEES 700 (1224)
T ss_dssp TTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTT
T ss_pred cCeEEEeccCceeeeeEEEecCCCccccccceecHHHHHHhhhccccccccccccccccchhHhccCCcEEEcChhhhcC
Confidence 579999999999999999998761 0 135899999999999
Q ss_pred eeeecCCCCCCCCC-------------------CCccceecccCCCccccceeecccCCCCCCCccchhhcccccccccc
Q 002296 609 MEIRCPDGGDGGRR-------------------NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669 (940)
Q Consensus 609 ~~Ia~~~~~~~~~~-------------------~~~~~th~EI~p~~ilsv~AslIPF~~HNqspRn~yq~~M~KQaig~ 669 (940)
++||++++++.... ....+|||||||++|||++||+||||||||||||||||||||||||+
T Consensus 701 ~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~~~~~~~~~~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~M~kQA~g~ 780 (1224)
T 1twf_B 701 ILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 780 (1224)
T ss_dssp CCEESSGGGGCC---------CCCTTSCCCCCCCCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBC
T ss_pred cEEeccccccCcccccccccccccccccccCCcCchhhcccccCCccccceeecccCCccccccchhhhccccccccccc
Confidence 99999998876510 01258999999999999999999999999999999999999999999
Q ss_pred cceeEEEeccCceeeccCCCeeeEeccceeecCCCCCCCCceeEEEEEeccCCCCCceEEEecchhccCcceeeEEEEEE
Q 002296 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749 (940)
Q Consensus 670 ~~~n~~~R~d~~~y~L~~~Q~Plv~t~~~~~~~~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~rG~~~~~~~~~~~ 749 (940)
+.+|+..|.|++.|+|+|||+|||+|+.++.++++|+|+|+||+||||||+||||||||||||+|+|||||++++|++|.
T Consensus 781 ~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~~~~elp~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~ 860 (1224)
T 1twf_B 781 FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM 860 (1224)
T ss_dssp SCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEE
T ss_pred ccceeeeecccccceeecCcCCeEEcccccccccccCCCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCcCccceeeccCCC------ChhhhcccCCCCCcccCcEecCCCcEEEEeecCC--------------CcEE
Q 002296 750 IDLSDDGNKVDRGQKLFRRNKD------AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--------------NSWR 809 (940)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~--------------~~~~ 809 (940)
++..... ....+.|+.|+. ....+++||+||||+||++|++|||||||++|+. .++.
T Consensus 861 ~~~~~~~---~~~~e~~~~P~~~~~~~~~~~~~~~LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~~~~~~~~~rd~ 937 (1224)
T 1twf_B 861 DQEKKYG---MSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDA 937 (1224)
T ss_dssp ECCCCSC---TTCCCEESCCCCSSSCBCCSSCGGGCCTTSBCCTTCEECTTCEEECEECCCC-------------CCBBC
T ss_pred EEeeeCC---CCceeEecCCChhhccCccHHHHhhcccCCccCCccEecCCCEEEEEecCCCccccccccccccCcccee
Confidence 8643211 123455777754 2456899999999999999999999999998853 2456
Q ss_pred EeeccCCCcEEEEEEEEEecCCCCCceEEEEEEeeecCCCcccceeccCCCccEEeeeecCCCcCccCCCCCcCcEEeCC
Q 002296 810 TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889 (940)
Q Consensus 810 ~~~~~~~e~g~V~~v~~~~~~~~~~~~~v~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dMPf~~~~G~~pDiI~NP 889 (940)
+++++++|+|+||+|.++.+++| .+.|||++|+.|.|+||||||||||||||||+|||+|||||| +||++|||||||
T Consensus 938 s~~~~~~e~g~Vd~V~~~~~~~g--~~~vkV~ir~~R~p~iGDKfasRHGqKGvis~i~p~eDMPf~-~dG~~pDiIiNP 1014 (1224)
T 1twf_B 938 STPLRSTENGIVDQVLVTTNQDG--LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFT-AEGIVPDLIINP 1014 (1224)
T ss_dssp CEECCTTCCEEEEEEEEEECSSS--CEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCEE-TTSCCCSEEECG
T ss_pred EEEeeCCCCeEEEEEEEEecCCC--CEEEEEEEEecCCCCchhhhhhhccCcceeeeecccccCCcC-CCCCCccEEeCC
Confidence 88999999999999999988754 588999999999999999999999999999999999999999 999999999999
Q ss_pred CCccccccHHHHHHHHHHHHHhhchhHH
Q 002296 890 HAFPSRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 890 h~~PSRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
||||||||||||+|+++||||+++|.++
T Consensus 1015 hg~PSRMtiGqllE~~lgka~~~~G~~~ 1042 (1224)
T 1twf_B 1015 HAIPSRMTVAHLIECLLSKVAALSGNEG 1042 (1224)
T ss_dssp GGSTTTTCHHHHHHHHHHHHHHHHCSCE
T ss_pred CcCccccccchhHHHHhhHHHHhcCcee
Confidence 9999999999999999999999999775
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=2.8e-186 Score=1752.47 Aligned_cols=833 Identities=26% Similarity=0.412 Sum_probs=712.5
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHcCCeeeeEE
Q 002296 9 FEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------DHCRQAKISYTGKL 49 (940)
Q Consensus 9 ~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------~ecR~r~~TYsa~l 49 (940)
++..++||+|||||||||+++||++++ +|||+|++||+|||
T Consensus 20 ~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~~~~~~l~f~~~~l~~P~~~e~d~~~~~l~P~EcR~r~~TYsapl 99 (1131)
T 4ayb_B 20 YFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPL 99 (1131)
T ss_dssp HHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCSSTTCEEEEEEEEECCSEEEETTTEEEECCHHHHHHHTCCCEEEE
T ss_pred HhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeecCCCEEEEEEEEEEeCCeeecCCCCcCccCHHHHHhcCCCccceE
Confidence 345689999999999999999999999 79999999999999
Q ss_pred EEEEEEEEecCCCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccccCCcEEEEcCceeEEEEEEeccCCccEE
Q 002296 50 MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129 (940)
Q Consensus 50 ~v~i~~~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D~GGYFIInG~EKVIr~qi~~~~N~~~~ 129 (940)
+|++.+..+ +.+++.++|++|+|||||+|++|||++++++||++.||||+|+||||||||+||||++|+++++|.+++
T Consensus 100 ~v~v~~~~~--~~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D~GGyFIING~ERVIv~Q~~~spn~~~~ 177 (1131)
T 4ayb_B 100 WLTMIPVEN--NIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLV 177 (1131)
T ss_dssp EEEEEEEET--TEECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTCCCCCEEETTEEEEECEEEEECCSSCEE
T ss_pred EEEEEEEEC--CcEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCCCCcEEEeCCEEEEEEEeeccCCCeEEE
Confidence 999998876 666778899999999999999999999999999999999999999999999999999999999999887
Q ss_pred EEeccccCCCCcceeeEEEEEeeecCCCceEEEEEEEeCCeEEEEEEeecccccccHhhHHHhccCCCHHHHHHHhcccc
Q 002296 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209 (940)
Q Consensus 130 ~~r~~~~~~~~~~t~~~v~~rs~~~~~~s~~~~l~y~~~g~~~l~~~~~~~~~~IPi~ilLkALg~~sD~eI~~~i~~~~ 209 (940)
... +++..++..+..+++ +..+ +..++++++++|.+++++...+. +||+++||||||..||+||++.+..
T Consensus 178 ~~~----~~~~~~~~~a~ii~~-~~~~-~~~~~i~~~~~~~~~v~~~~~~~--~iPi~illrALG~~sD~eI~~~i~~-- 247 (1131)
T 4ayb_B 178 DTG----KTGSNITHTAKIISS-TAGY-RVPVTIERLKDGTFHVSFPAVPG--KIPFVILMRALGILTDRDIVYAVSL-- 247 (1131)
T ss_dssp EEC----CTTCSEEEEEECEEE-CSSC-EEECCEEEETTTCCEECCSSSCC--CEEHHHHHHHHTCCSHHHHHHHHCS--
T ss_pred Eec----cCCCcEEEEEEEEEC-CCCc-eeeEEEEEeCCCEEEEEEcCcCc--eeeHHHHHHHhCCcchhhHHHHhcc--
Confidence 543 223334433333333 2222 23467899999999888775443 6999999999999999999999972
Q ss_pred cchhhcccCCCCChhhHHHHHHHHHHHHhcccccHHHHHHHHhccccccccCCCCccHHHHHHHHHHhHhccCCCCC---
Q 002296 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN--- 286 (940)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~i~t~~~al~yig~~fr~~~~~~~~~~~~~~~~~~L~~~ll~Hl~~~--- 286 (940)
+. .+.+.+...++ +...+.|+++||.||+++++. .....+..+.|+.+|++++|||++..
T Consensus 248 ~~------------~~~~~l~~~~~--~~~~i~~~~~al~~i~~r~~~---~~~~~~~~~~a~~il~~~~l~hl~~~~~~ 310 (1131)
T 4ayb_B 248 DP------------EIQNELFPSLE--QASSIANVDDALDFIGSRVAI---GQKRENRIEKAQQIIDKYFLPHLGTSADD 310 (1131)
T ss_dssp CH------------HHHTTTHHHHH--HHTTTCCSSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTSSTTSCSSTTS
T ss_pred cH------------HHHHHHHHHHH--HhcccccHHHHHHHHhhhhhc---CCCCchhHHHHHHHHHHhhcccccccccc
Confidence 11 11111112222 234689999999999999874 23455678899999999999999843
Q ss_pred -cchHHHHHHHHHHHHHhcCCCCCCCCccccccceecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHH
Q 002296 287 -NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN 365 (940)
Q Consensus 287 -~~K~~~L~~MirkLl~~~~g~~~~Dd~D~l~NkRv~l~G~Ll~~lf~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 365 (940)
..|+.+|++|+++|+.+..|.+.+||+|||+||||+++|+||+++||..|+++.+.++..+.+...+ .+.+.
T Consensus 311 ~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~~~~~~-~~~~~------ 383 (1131)
T 4ayb_B 311 RRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVR-GRKLA------ 383 (1131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CSCCC------
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcccchhc-ccccc------
Confidence 4699999999999999999999999999999999999999999999999988888887777654332 22221
Q ss_pred HHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEccccchHHHhhhhcccccCCcccccccccccccCCCC
Q 002296 366 IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445 (940)
Q Consensus 366 ~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvleRln~~~~lSh~Rrv~rg~~~~~~K~t~vR~Lhps~ 445 (940)
++.++ +++.||++|++|||||||.. +++||||+++|+||+++|||+|||++| +++++|+++||+|||||
T Consensus 384 ~~~li---~~~~it~~i~~~~aTGn~~~-------~~sglSQ~mdq~NpLs~lsH~RRlsag-l~rera~~evRdlHpSh 452 (1131)
T 4ayb_B 384 LKALV---RPDIVTERIRHALATGNWVG-------GRTGVSQLLDRTNWLSMLSHLRRVISS-LARGQPNFEARDLHGTQ 452 (1131)
T ss_dssp HHHHC---CTHHHHHHHHHHHHTTBCSS-------SCBCCEEECCCSSHHHHHHHHTEEEEC-SCSSSCCHHHHSCCGGG
T ss_pred hhhhc---CCchhhhhhHHHHhhccccc-------CCCceEEEeccCCHHHHHHhhhhhcCC-cccccccccccccCHhh
Confidence 33344 45689999999999999943 689999999999999999999999985 77999999999999999
Q ss_pred ccccccCCCCCCccccccccccceeEEeeccCCCCcccccchhhHHHHHHHHhCCCeecCCcc---c-----cCCCCcce
Q 002296 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL---V-----KSGPPAVL 517 (940)
Q Consensus 446 wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~---~-----~~~~~~~~ 517 (940)
||||||+|||||+|||||||||++|+|+.+.+.. .+.+.|.++|+.+..... . ........
T Consensus 453 yGriCPIETPEG~niGLI~sLA~~a~I~~g~~e~-----------~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~ 521 (1131)
T 4ayb_B 453 WGRMCPFETPEGPNSGLVKNLALMAQIAVGINEK-----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWS 521 (1131)
T ss_dssp TTTBCSSCCCSSTTBTTEEEBBSSCEECCCCCHH-----------HHHHHHHHTTCEEHHHHHHTTTTC-----CCCCCC
T ss_pred ccccccccCCCCccccccccceeeEEEecCCCCc-----------ceeeehhhcCceeeeeeehhhcccccccchhhhhc
Confidence 9999999999999999999999999998654332 477888899998652100 0 00112335
Q ss_pred EEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCCCCCceEEecCCCceeceEEeccCCCC----
Q 002296 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---- 593 (940)
Q Consensus 518 ~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~~~i~i~~d~gR~~RPv~~~~~~~~---- 593 (940)
+||+||+|+|++ .++..++..+|.+|+.+ .++..++|++... ...+++++++|+||++|||..++.+.+
T Consensus 522 ~v~lng~~vg~~--~~~~~~~~~~~~~~~~~--~i~~~vsi~~~~~---~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~~ 594 (1131)
T 4ayb_B 522 KVILNGRLVGYY--RDGEELAKKIRERRRKG--EISDEVNVGHIVT---DFINEVHVNCDSGRVRRPLIIVSNGNPLVTR 594 (1131)
T ss_dssp EEEETTEEEEEC--SCHHHHHHHHHHHHHHT--SSCTTCEEEEECT---TTCCEEEEECCTTCEEEEEEEBSSSSBSCCH
T ss_pred ceeecCceEEEe--ccchhhhhhhhhhhccC--ccCceEEEeeccc---cccceeeeecCCcccccceEEeecccccccH
Confidence 899999999997 45788999999999988 5677888877643 345789999999999999999877643
Q ss_pred -----------------CCCceeeecccceeeeeeecCCCCCCCCCCCccceecccCCCccccceeecccCCCCCCCccc
Q 002296 594 -----------------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656 (940)
Q Consensus 594 -----------------~~~~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~p~~ilsv~AslIPF~~HNqspRn 656 (940)
..|.+||+|++|+++++||+.++++... +||+||+|+.++|++|++|||++|||||||
T Consensus 595 ~~~~~~~~g~~~~~~~~~~g~veyvd~~e~~~~~ia~~~~~~~~~-----~th~ei~p~~il~v~a~lipf~~~NqspRn 669 (1131)
T 4ayb_B 595 EDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPE-----HTHLEIWSPAILGITASIIPYPEHNQSPRN 669 (1131)
T ss_dssp HHHHHHHTTTCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGCCTT-----CSEECSCGGGGSBTTGGGCSSGGGSCHHHH
T ss_pred HHHHHHhcCChhHHHHhhCCceeeeeccccceeEEEeeccccccc-----ccceeeccccccccccceecccccCccchh
Confidence 2478999999999999999999998776 899999999999999999999999999999
Q ss_pred hhhcccccccccccceeEEEeccCceeeccCCCeeeEeccceeecCCCCCCCCceeEEEEEeccCCCCCceEEEecchhc
Q 002296 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736 (940)
Q Consensus 657 ~yq~~M~KQaig~~~~n~~~R~d~~~y~L~~~Q~Plv~t~~~~~~~~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~ 736 (940)
+|||||+|||||++.+|+..|.|++.|+|+|||+|||+|+.++.++++++|+|+|++||||||+||||||||||||++++
T Consensus 670 ~yq~~m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~t~~~~~~~~~e~p~G~N~lVA~m~w~GYN~EDAIIine~~v~ 749 (1131)
T 4ayb_B 670 TYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVE 749 (1131)
T ss_dssp HHHHHHGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSBCHHHHHHTCTTSCCSEEEEEEECCCSSCCCTTCEEEEHHHHT
T ss_pred eeccccccccCCceeecceeeeccccceeecCCccccccchhhhhccCCCCCceeEEEEEEccCCccHHHhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeEEEEEEEEeeccCCCcCccceeec--cCCC----ChhhhcccCCCCCcccCcEecCCCcEEEEeecCC-----
Q 002296 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKD----AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT----- 805 (940)
Q Consensus 737 rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~----- 805 (940)
||+|++++|++|.++..+.+. +..+.++ .|+. .+..+++||+||||++|++|++||||+||++|+.
T Consensus 750 rg~ftSihi~~y~~e~r~~~~---g~~e~it~~~p~v~~~~~~~~~~~LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~~ 826 (1131)
T 4ayb_B 750 RGMYRSTFFRLYSTEEVKYPG---GQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEF 826 (1131)
T ss_dssp TTTTCEEEEEEEEEECCCCTT---SCCCCCCCCCSSCSSCCCGGGGTTCCTTSBCCTTCEECTTCEEECCCCCCC-----
T ss_pred cccceeeEEEEEEEEEEecCC---CCceEEecCCccccccchHHHhhcCCccccccCCcEecCCCEEEEEecCCcchhhh
Confidence 999999999999987644332 1122333 3443 4567899999999999999999999999988742
Q ss_pred --------CcEEEeeccCCCcEEEEEEEEEecCCCCCceEEEEEEeeecCCCcccceeccCCCccEEeeeecCCCcCccC
Q 002296 806 --------NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877 (940)
Q Consensus 806 --------~~~~~~~~~~~e~g~V~~v~~~~~~~~~~~~~v~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dMPf~~ 877 (940)
.++.++++++++.|+||+|.++.+.+| .+.|+|++|+.|+|+||||||||||||||||+|||+|||||+
T Consensus 827 ~~~~~~~~~~d~sl~~~~g~~g~Vd~v~~~~~~~~--~~~vkV~i~~~R~~~vGDK~agRHGnKGvvs~i~p~eDMPf~- 903 (1131)
T 4ayb_B 827 KELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEG--NKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYT- 903 (1131)
T ss_dssp ------CCCCCCCEECCTTCCEEEEEEEEEECSSS--CEEEEEEEEEEECCCTTCEEEETTSCEEEEEEEECTTTSEEE-
T ss_pred hhcCcceeeeeeeEEccCCCceEEEEEEEeeccCC--ceEEEEEEeccccCcccccccccccccceeeeecccccCCcC-
Confidence 235588999999999999999988754 588999999999999999999999999999999999999999
Q ss_pred CCCCcCcEEeCCCCccccccHHHHHHHHHHHHHhhchhHH
Q 002296 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 878 ~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
+||++|||||||||||||||||||+|+++||+|+++|.++
T Consensus 904 ~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~~~g~~~ 943 (1131)
T 4ayb_B 904 VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIV 943 (1131)
T ss_dssp TTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCccEEECCCCCcccCcHHHHHHHHHHHHHHhCCCce
Confidence 9999999999999999999999999999999999999775
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=8.2e-163 Score=1499.68 Aligned_cols=729 Identities=20% Similarity=0.269 Sum_probs=579.9
Q ss_pred CCccCchhhHHHHHHHHHHHH----------HHHHHHHH--------------------------------HHHHHcCCe
Q 002296 7 ADFEPLRELVRHHIESFDYML----------DEGLSEMF--------------------------------DHCRQAKIS 44 (940)
Q Consensus 7 ~~~~~~~~Lv~~hi~SFn~Fi----------~~gl~~ii--------------------------------~ecR~r~~T 44 (940)
+.+..+++|+++|++|||||+ ++||++++ +|||+|++|
T Consensus 10 ~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~~~~~~~l~f~~~~l~~P~~~p~Ecr~r~lT 89 (1119)
T 2a6h_C 10 REVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLT 89 (1119)
T ss_dssp CCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCSSSCCEEEEECCCCBCCCSSCHHHHHHTTCC
T ss_pred cccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCCCCCeEEEEEEEEEEcCCCCCHHHHHhcCCc
Confidence 345679999999999999999 99999998 899999999
Q ss_pred eeeEEEEEEEEEEecCCCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccccCCcEEEEcCceeEEEEEEeccC
Q 002296 45 YTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124 (940)
Q Consensus 45 Ysa~l~v~i~~~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D~GGYFIInG~EKVIr~qi~~~~ 124 (940)
|+|||+|++++.++ .++++++++|++|+||||+. ||||||||+||||++|+++++
T Consensus 90 YsapL~V~v~l~~~-~~~~ik~~~V~iG~iPiMt~------------------------gGyFIING~ERVIVsQ~~rsp 144 (1119)
T 2a6h_C 90 YQAPLYARLQLIHK-DTGLIKEDEVFLGHIPLMTE------------------------DGSFIINGADRVIVSQIHRSP 144 (1119)
T ss_dssp CEEEBCCCEEECCS-SSCCEECCCCCCCEEECCCT------------------------TSCCCSSSSCEEECEEEEECS
T ss_pred ccceEEEEEEEEEC-CCceeeeeEEEecCCCeECC------------------------CcEEEEeCeEEEEEEEEecCC
Confidence 99999999999764 13556667899999999994 999999999999999999999
Q ss_pred CccEEEEeccccCCC-CcceeeEEEEEeeecCCCceEEEEEEEeCCeEEEEEEeecccccccHhhHHHhccCCCHHHHHH
Q 002296 125 NYPMSMVRSSFRDRR-EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203 (940)
Q Consensus 125 N~~~~~~r~~~~~~~-~~~t~~~v~~rs~~~~~~s~~~~l~y~~~g~~~l~~~~~~~~~~IPi~ilLkALg~~sD~eI~~ 203 (940)
|.++ +..+.+++ ..|++.+++.||+ |+.+.+++++.+|+++.. .+||+++||||||+ ||+||++
T Consensus 145 gv~~---~~~~~~~g~~~ysa~ii~~rgs-------~l~~~~d~~~~i~vri~r----~kIPi~ilLrALG~-sD~eIl~ 209 (1119)
T 2a6h_C 145 GVYF---TPDPARPGRYIASIIPLPKRGP-------WIDLEVEPNGVVSMKVNK----RKFPLVLLLRVLGY-DQETLAR 209 (1119)
T ss_dssp CEEE---ECCSSCSSCCEEEECCCSSSSC-------CEEEEEETTTEEEEESSS----SEECHHHHHHHHTC-CHHHHHH
T ss_pred cEEE---EeeccCCCceEEEEEEEeccCc-------eEEEEEcCCCEEEEEEeC----cceeHHHHHHHHCC-CHHHHHH
Confidence 9544 44444333 5687777666663 888888889999998654 47999999999999 9999999
Q ss_pred HhcccccchhhcccCCCCChhhHHHHHHHHHHHHhc--ccccHHHHHHHHhcccccc---------------ccCCCCcc
Q 002296 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPV---------------IDGLQSES 266 (940)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~i~t~~~al~yig~~fr~~---------------~~~~~~~~ 266 (940)
.|+. + ..+.+. | .+. .+.|+++|+.||++++++- ++.+.+++
T Consensus 210 ~~~~--~------------~~~~~t----l---~~d~~~~~~~~eAl~~i~~~lr~g~~~~~e~a~~~l~~~ff~~~ryd 268 (1119)
T 2a6h_C 210 ELGA--Y------------GELVQG----L---MDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYD 268 (1119)
T ss_dssp HHHS--S------------CTTHHH----H---SSCHHHHTCHHHHHHHHHHHSSSCCCSCCSSHHHHHTSSSSSSCCSC
T ss_pred HHcc--C------------HHHHHH----H---HhhhcccCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhCCccccc
Confidence 9972 1 111111 1 111 1345555666665555321 13356666
Q ss_pred HHHHHHHHHHhHhccCCCCC----------cchHHHHHHHHHHHHHhcCCCC--CCCCccccccceecccchhHHHHHHH
Q 002296 267 YYAVAETVIRDYIFVHLNDN----------NDKFNLLIFMLQKLFSLVDHTS--VSDNPDSLQNQEILLPGHLITIYLKE 334 (940)
Q Consensus 267 ~~~~~~~~L~~~ll~Hl~~~----------~~K~~~L~~MirkLl~~~~g~~--~~Dd~D~l~NkRv~l~G~Ll~~lf~~ 334 (940)
+.++|+..|++++ |+... ..+..+|++|+++|+.+..|.+ .+||+|||+||||+++|+||+++||.
T Consensus 269 l~~vGr~~ln~kl--~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~DD~DhlgNkRv~~~GeLl~~~fr~ 346 (1119)
T 2a6h_C 269 LGEAGRYKAEEKL--GIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRV 346 (1119)
T ss_dssp TTTSSHHHHHTTS--CSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCCCTTSTTTEEEECHHHHHHHHHHH
T ss_pred chhcchhhhhhhh--ccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCcCcchhhceEehhhhHHHHHHHHH
Confidence 7777777777766 33221 1222457899999999999999 99999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEccccc
Q 002296 335 KLEDWLRKGKKLIQDEIENNG-KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413 (940)
Q Consensus 335 ~~~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvleRln 413 (940)
.|+++.+.++..+ .+.. +.+. ++.++ +++.||++|++||+|||| ||+|+|+|
T Consensus 347 ~l~r~~~~i~~~~----~~~~~~~~~------~~~~i---~~~~It~~lk~ff~tg~l--------------SQ~Ldq~N 399 (1119)
T 2a6h_C 347 GLARLARGVRERM----LMGSEDSLT------PAKLV---NSRPLEAAIREFFSRSQL--------------SQFKDETN 399 (1119)
T ss_dssp HHHHHHHHHHHHH----HHSCSSCCS------STTTC---CSHHHHHHHHHHHHTCSS--------------EEECCCSS
T ss_pred HHHHHHHHHHHHh----hhhcccccc------hHHhh---ccchhHHHHHHHhhccCc--------------cccccccc
Confidence 7766666555554 3311 1111 11222 356899999999999764 68899999
Q ss_pred hHHHhhhhcccc---cCCcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccchhhH
Q 002296 414 FLRFISFFRAVH---RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490 (940)
Q Consensus 414 ~~~~lSh~Rrv~---rg~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~~~ 490 (940)
|+|+|||+||++ ||++++++|+++||+||||||||+||+|||||++||||||||++|+|+
T Consensus 400 ~ls~LsH~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~----------------- 462 (1119)
T 2a6h_C 400 PLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVD----------------- 462 (1119)
T ss_dssp THHHHHHHHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEEC-----------------
T ss_pred hHhhhhhhheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeec-----------------
Confidence 999999999995 888999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhCCCeecCCccccCCCCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCCCCC
Q 002296 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYP 570 (940)
Q Consensus 491 ~i~~~L~~~g~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~~ 570 (940)
++|+++. + +.+++||+|.+.+.--.+ ... .. +.... .
T Consensus 463 -------~~G~~e~-p----------~~~V~nG~v~~~i~yl~a------~ee---~~-----------~~i~~-----~ 499 (1119)
T 2a6h_C 463 -------ELGFIRT-P----------YRRVVGGVVTDEVVYMTA------TEE---DR-----------YTIAQ-----A 499 (1119)
T ss_dssp -------SSSCEEE-E----------EEEEETTEEEEEEEEECH------HHH---HH-----------SCEEC-----T
T ss_pred -------ccCcccC-C----------cEEEECCEEeeeeEEeCh------hcc---cc-----------eEEec-----C
Confidence 2466542 1 445579998654321100 011 00 11001 1
Q ss_pred ceEEecCCCceeceEEeccCCCCCCCceeeecccceeeeeeecCCCCCCCCCCCccceecccCCCccccceeecccCCCC
Q 002296 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650 (940)
Q Consensus 571 ~i~i~~d~gR~~RPv~~~~~~~~~~~~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~p~~ilsv~AslIPF~~H 650 (940)
.+. .|.||++||++.++.. .|+ +.+.+++ +|||||||++|||++||||||+||
T Consensus 500 ~~~--l~~gr~~r~~i~~r~~------~e~----------~~~~~~~---------~~~~ei~P~~ilsv~aslIPF~eh 552 (1119)
T 2a6h_C 500 NTP--LEGNRIAAERVVARRK------GEP----------VIVSPEE---------VEFMDVSPKQVFSVNTNLIPFLEH 552 (1119)
T ss_dssp TSC--BSSSBBCCSSEEEESS------SSE----------EEECTTT---------CCEEECCTTTTSCHHHHTCTTGGG
T ss_pred cee--ecCCccccCceeEEec------cce----------eeechhH---------eEEEEeccccccccccccCCCccc
Confidence 122 2559999999887653 122 1222222 799999999999999999999999
Q ss_pred CCCccchhhcccccccccccce-----------------------------------eEEEecc---Cceeec-------
Q 002296 651 NQSPRNMYQCQMAKQTMGFSVQ-----------------------------------ALKFRAD---QKLYHL------- 685 (940)
Q Consensus 651 NqspRn~yq~~M~KQaig~~~~-----------------------------------n~~~R~d---~~~y~L------- 685 (940)
||||||||||||||||||+... ++..|.| ++.|.|
T Consensus 553 n~s~R~lmgsnM~kQAv~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~~~~~~~y~L~~~~rsn 632 (1119)
T 2a6h_C 553 DDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSN 632 (1119)
T ss_dssp BCHHHHHHHHHHHTTBCCBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEETTTEEECCBCCCSEECT
T ss_pred CCCcccccccccccccccccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEccCCcceeEEeecccccc
Confidence 9999999999999999987533 5667774 467887
Q ss_pred ---cCCCeeeEeccceee----------cCCCCCCCCceeEEEEEeccCCCCCceEEEecchhccCcceeeEEEEEEEEe
Q 002296 686 ---QTPQTPIVRTNTYTK----------YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752 (940)
Q Consensus 686 ---~~~Q~Plv~t~~~~~----------~~~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~rG~~~~~~~~~~~~~~ 752 (940)
.|||+|||+++.+.. .+++|+|+|+|++||||||+||||||||||||++++||+|++.+++.|.++.
T Consensus 633 q~t~~~QkPiV~~g~~v~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~e~~~ 712 (1119)
T 2a6h_C 633 QGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEA 712 (1119)
T ss_dssp TSCEECCEECCCSSCCBCTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEEEEEE
T ss_pred ccccccccceEeeCceeeccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEEEeee
Confidence 579999999997632 3569999999999999999999999999999999999999999999999876
Q ss_pred eccCCCcCccceeec--cCCCChhhhcccCCCCCcccCcEecCCCcEEEEeecCC---------------------CcEE
Q 002296 753 SDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------------------NSWR 809 (940)
Q Consensus 753 ~~~~~~~~~~~~~~~--~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~---------------------~~~~ 809 (940)
.+.+.. .+.++ .|+..+..+++||+||||++|++|++|||||||++|+. .++.
T Consensus 713 r~~~~g----~eeit~~ip~~~~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~aifg~k~~~~rd~ 788 (1119)
T 2a6h_C 713 RDTKLG----PERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDT 788 (1119)
T ss_dssp ECCTTC----CCBCCSCCSSSCSGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHHHHHHSCCCCEEEC
T ss_pred eecCCC----ceeeeccCCCcchhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhhhhhccccccccee
Confidence 554321 22232 56666777899999999999999999999999988653 1355
Q ss_pred EeeccCCCcEEEEEEEEEecCC-CCC-----ceEEEEEEeeecCCCcccceeccCCCccEEeeeecCCCcCccCCCCCcC
Q 002296 810 TNSRKGSESVFVDYVAVDMKNS-KNL-----PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883 (940)
Q Consensus 810 ~~~~~~~e~g~V~~v~~~~~~~-~~~-----~~~v~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dMPf~~~~G~~p 883 (940)
++++++++.|+|++|+++.+++ |+. .+.|+|++|+.|+|+||||||||||||||||+|||+|||||+ +||++|
T Consensus 789 Sl~~~~~e~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~eDMPf~-~dG~~p 867 (1119)
T 2a6h_C 789 SLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHL-PDGTPV 867 (1119)
T ss_dssp CEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECTTTSCBC-SSSCBC
T ss_pred eEEccCCccEEEEEEEEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeeccCCCccc-cCCCCc
Confidence 8999999999999999998876 543 378999999999999999999999999999999999999999 999999
Q ss_pred cEEeCCCCccccccHHHHHHHHHHHHHhhchhHH
Q 002296 884 DLIINPHAFPSRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 884 DiI~NPh~~PSRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
||||||||||||||||||+|+++||||+++|..+
T Consensus 868 DiIlNPhgvPSRMtiGqllE~~lG~a~~~~g~~~ 901 (1119)
T 2a6h_C 868 DVILNPLGVPSRMNLGQILETHLGLAGYFLGQRY 901 (1119)
T ss_dssp SEECCSTTTTTTTBTHHHHHHHHHHHHHHTTEEE
T ss_pred cEEeCCCcCccccchhhhhHHHhhhHHhhcCCce
Confidence 9999999999999999999999999999998664
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=2.5e-148 Score=1354.51 Aligned_cols=765 Identities=19% Similarity=0.265 Sum_probs=603.8
Q ss_pred CccCchhhHHHHHHHHHHHHH------HHHHHHH-----------------------------HHHHHcCCeeeeEEEEE
Q 002296 8 DFEPLRELVRHHIESFDYMLD------EGLSEMF-----------------------------DHCRQAKISYTGKLMAD 52 (940)
Q Consensus 8 ~~~~~~~Lv~~hi~SFn~Fi~------~gl~~ii-----------------------------~ecR~r~~TYsa~l~v~ 52 (940)
....+|+|+++|++||+||++ +||++++ .|||+|++||+|||+|+
T Consensus 20 ~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d~~~~~~Lef~~y~l~~Pk~~~~Ec~~r~lTYsapL~v~ 99 (1342)
T 3lu0_C 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVK 99 (1342)
T ss_dssp CSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEETTTTEECCEEEECCCCCSCCSSTTTSSCCCCCCCCBEE
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEECCCCCEEEEEeeEEeCCCCCCHHHHHhcCCCcccceEEE
Confidence 344689999999999999997 8999999 89999999999999999
Q ss_pred EEEEEecC------CCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccccCCcEEEEcCceeEEEEEEeccCCc
Q 002296 53 VEFQYLDA------GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126 (940)
Q Consensus 53 i~~~~~~~------~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D~GGYFIInG~EKVIr~qi~~~~N~ 126 (940)
+++.+.+. .+++++++|++|+||+|+. +|||||||+||||++|++++|+.
T Consensus 100 ~rL~~~~~d~~~~~~~eikeq~Vy~GdiPLMT~------------------------~GtFIING~ERVIVsQl~RSPGV 155 (1342)
T 3lu0_C 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD------------------------NGTFVINGTERVIVSQLHRSPGV 155 (1342)
T ss_dssp ECCEECCCSSCCCCCCCCCBCCCBCCCCCCCCS------------------------SSCEESSSSEEECCEEEECCSSC
T ss_pred EEEEEeccccccccccceEEEEEEEecCceECC------------------------CcEEEEcCceEEEEEeecccCce
Confidence 99986521 2456678999999999997 89999999999999999999995
Q ss_pred cEEEEecccc-CCCCcceeeEEEEEeeecCCCceEEEEEEEeCCeEEEEEEeecccccccHhhHHHhccCCCHHHHHHHh
Q 002296 127 PMSMVRSSFR-DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205 (940)
Q Consensus 127 ~~~~~r~~~~-~~~~~~t~~~v~~rs~~~~~~s~~~~l~y~~~g~~~l~~~~~~~~~~IPi~ilLkALg~~sD~eI~~~i 205 (940)
.+...+.+.+ +.+..|++..++.||+ |+.+.++.++.+|++++.++ +||+++||||||+ +++||++.+
T Consensus 156 yf~~~~~k~~~~gk~lysa~IIP~RGs-------Wlefe~D~kd~l~vrIdr~r---Kipvt~lLrALG~-~~~~Il~~f 224 (1342)
T 3lu0_C 156 FFDSDKGKTHSSGKVLYNARIIPYRGS-------WLDFEFDPKDNLFVRIDRRR---KLPATIILRALNY-TTEQILDLF 224 (1342)
T ss_dssp CCCSCCSCSSSCCCSCCEEEECCSSSC-------CEEEEEETTTEEEEEESSCS---CEETTHHHHTTTC-CHHHHHTTT
T ss_pred eEeccccccCCCCceEEEEEEecCCCc-------cEEEEEcCCCeEEEEecCCC---ceeeehhHhHhCC-CHHHHHHHh
Confidence 4332222222 3456799999988885 99999999999999998755 6999999999999 678999887
Q ss_pred cccccchhh-------------cccC-----CC-----------------------------------------------
Q 002296 206 TCCYDEKYK-------------KEKG-----AV----------------------------------------------- 220 (940)
Q Consensus 206 ~~~~~~~~~-------------~~~~-----~~----------------------------------------------- 220 (940)
... +... ...+ +.
T Consensus 225 ~~~--~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~~~l~~~g~~~i~v~~~~l~g~~la~div 302 (1342)
T 3lu0_C 225 FEK--VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 (1342)
T ss_dssp SCE--EEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHHHHHHHTTCCCEECCSHHHHTSEECSCEE
T ss_pred ccc--ceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHHHHHHhccCcccccCHHHhhcchhhheee
Confidence 420 0000 0000 00
Q ss_pred -----------CChhhHHHHHHHHHH----------------------HHhcccccHHHHHHHHhcccccc---------
Q 002296 221 -----------GSPLVSERVKIILAE----------------------VQDLSLTTRLQCLQHIGEHFQPV--------- 258 (940)
Q Consensus 221 -----------~~~~~~~~~~~ll~~----------------------~~~~~i~t~~~al~yig~~fr~~--------- 258 (940)
.+..-.+.+..+.+. +.+....|+++|+.+|++++|+-
T Consensus 303 d~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d~~~~~~eAl~~iyr~lrpgep~t~e~a~ 382 (1342)
T 3lu0_C 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 (1342)
T ss_dssp CTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTCCCCSSHHHHHHHHHHHSCSSCCCTTHHH
T ss_pred ecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhccCCCHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 000001112222111 11224678999999999998752
Q ss_pred ------ccCCCCccHHHHHHHHHHhHhccC-CC-CCcchHHHHHHHHHHHHHhcCCCCCCCCccccccceecccchhHHH
Q 002296 259 ------IDGLQSESYYAVAETVIRDYIFVH-LN-DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330 (940)
Q Consensus 259 ------~~~~~~~~~~~~~~~~L~~~ll~H-l~-~~~~K~~~L~~MirkLl~~~~g~~~~Dd~D~l~NkRv~l~G~Ll~~ 330 (940)
++.+.+|+..++||..||++|-.. .+ +...+..+|+.++++|+.+..|....||+|||+||||+++|+||++
T Consensus 383 ~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~Li~l~~g~~~~DDiDHLgNrRvr~vGeLl~~ 462 (1342)
T 3lu0_C 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 (1342)
T ss_dssp HHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHHHHHHHHTSSCCCCSSSTTTSEEECHHHHHHH
T ss_pred HHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHHHHHHhhCCCCCcchhhhhcchhchHHHHHHH
Confidence 335677888888888888888655 33 3446778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEcc
Q 002296 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410 (940)
Q Consensus 331 lf~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvle 410 (940)
+|+..|.++. +.+++++..... -.+. ++.++ +++++|+++++||+| +||||+++
T Consensus 463 qfr~~l~r~~----r~i~~~~~~~~~-~~~~----~~~li---n~~~i~~~~k~ffg~--------------s~lSQ~lD 516 (1342)
T 3lu0_C 463 QFRVGLVRVE----RAVKERLSLGDL-DTLM----PQDMI---NAKPISAAVKEFFGS--------------SQLSQFMV 516 (1342)
T ss_dssp THHHHHHHHH----HHHTTHHHHCCS-SCCS----STTTC---CSSTTHHHHTTTTTT--------------CSSCEECC
T ss_pred HHHHHHHHHH----HHHHHHHhhccc-ccCC----HHHHh---ccchHHHHHHHHhCc--------------cccceeec
Confidence 9996555544 444444444211 1111 12233 467899999998753 79999999
Q ss_pred ccchHHHhhhhcccc---cCCcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccch
Q 002296 411 RLNFLRFISFFRAVH---RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487 (940)
Q Consensus 411 Rln~~~~lSh~Rrv~---rg~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~ 487 (940)
|+|+++.|||+||++ +|++.++++.++||+|||||||+|||+|||||++||||+|||++|+|+
T Consensus 517 qtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~in-------------- 582 (1342)
T 3lu0_C 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-------------- 582 (1342)
T ss_dssp CSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCBC--------------
T ss_pred CCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEec--------------
Confidence 999999999999999 788889999999999999999999999999999999999999999996
Q ss_pred hhHHHHHHHHhCCCeecCCccccCCCCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCC
Q 002296 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567 (940)
Q Consensus 488 ~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~ 567 (940)
++|+++. | |.++.||++-..+. + +..+.|-.|+....+.
T Consensus 583 ----------~~Gfiet-P----------yr~V~~g~v~~~i~------------y--------LsA~eE~~~~IAqan~ 621 (1342)
T 3lu0_C 583 ----------EYGFLET-P----------YRKVTDGVVTDEIH------------Y--------LSAIEEGNYVIAQANS 621 (1342)
T ss_dssp ----------SSSCBCE-E----------EEEEETTEEEEEEE------------E--------ECTTTGGGSCBCCSSS
T ss_pred ----------cCCcccC-C----------cEEEECCEEcCcee------------e--------CChHHhcCceEEecCc
Confidence 4677754 3 77889999854321 0 1111111122221111
Q ss_pred CCCceEEecCCCceeceEEeccCCCCCCCceeeecccceeeeeeecCCCCCCCCCCCccceecccCCCccccceeecccC
Q 002296 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647 (940)
Q Consensus 568 ~~~~i~i~~d~gR~~RPv~~~~~~~~~~~~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~p~~ilsv~AslIPF 647 (940)
-.++.|++.++++.++.. +++..+ .+++ ++|||++|.+|+|++||||||
T Consensus 622 ------~l~~~g~~~~~~v~~R~~--------------~e~~~~--~~~~---------v~~~dvsP~qivSvaaslIPF 670 (1342)
T 3lu0_C 622 ------NLDEEGHFVEDLVTCRSK--------------GESSLF--SRDQ---------VDYMDVSTQQVVSVGASLIPF 670 (1342)
T ss_dssp ------CCSSSSCCSCSSEEEECS--------------SCEEEE--CTTT---------CCEEESCTTTTSCHHHHSCTT
T ss_pred ------ccCCCCcccCCeEEEEec--------------CceEEe--ChHH---------CeeEecCHHHhcchhhccCCC
Confidence 136789999988876533 122222 2222 699999999999999999999
Q ss_pred CCCCCCccchhhccccccccccc-----------------------------------ceeEEEeccC----------ce
Q 002296 648 SDHNQSPRNMYQCQMAKQTMGFS-----------------------------------VQALKFRADQ----------KL 682 (940)
Q Consensus 648 ~~HNqspRn~yq~~M~KQaig~~-----------------------------------~~n~~~R~d~----------~~ 682 (940)
++||||||++|||||||||||+. +.++.+|.|. +.
T Consensus 671 LEhdDAnRaLMGsNMQRQAVPLl~~e~p~VgTG~E~~~a~dsg~~i~a~~~G~v~~vda~~I~Ir~~~~~~~~~~~~~~~ 750 (1342)
T 3lu0_C 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 (1342)
T ss_dssp STTBCHHHHHHHHHTTTTBCCCSSCCCCSSBCSCHHHHHHHTTTSCBCSSCBEECCCCSSBCCEEECSSSSSSSCCEEEC
T ss_pred cccCCccccchhhhccccccccccCCCCeEecccchheeecCCceEEecCCCEEEEecCCeEEEEeCCCccccccCcceE
Confidence 99999999999999999999875 5567777764 34
Q ss_pred eecc----------CCCeeeEeccceeecC----------CCCCCCCceeEEEEEeccCCCCCceEEEecchhccCccee
Q 002296 683 YHLQ----------TPQTPIVRTNTYTKYG----------IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742 (940)
Q Consensus 683 y~L~----------~~Q~Plv~t~~~~~~~----------~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~rG~~~~ 742 (940)
|.|. |+|+|+|+++.....| .+|+|+|+|++||||||.|||+|||||||++++++++|+|
T Consensus 751 y~L~kf~RSNq~Tc~~QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~fTS 830 (1342)
T 3lu0_C 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 (1342)
T ss_dssp CBCCCSCBCSSSCBCCCCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTSCE
T ss_pred EEecccccccccccccccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccchhhhhhhhhcCCcee
Confidence 5554 7999999999876544 6999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeccCCCcCccceeeccCCCChhhhcccCCCCCcccCcEecCCCcEEEEeecCC-----------------
Q 002296 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT----------------- 805 (940)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~----------------- 805 (940)
++...|.++..+.+...+..+ ..+||..+..+++||++|||++|++|++|||||||++|+.
T Consensus 831 IHIee~e~~aRdtklG~EeiT--rdIPnv~e~al~~LDe~GIv~iGa~V~~GDILVGKvtPkge~~~tpEekLLraIFGe 908 (1342)
T 3lu0_C 831 IHIQELACVSRDTKLGPEEIT--ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 (1342)
T ss_dssp EEEEEEEEECCEETTEECCCC--SCCSSCCHHHHHSBCSSSCBCTTCCCCTTCEEECCCCBCCTTTCCHHHHHGGGTSCS
T ss_pred EEEEEEeeeeeecCCCCceec--ccCCCCChHHHhcCCCCCCeecCcEECCCCEEEeccCCCCCCcCChHHHHHHHHhcC
Confidence 999888887655443222121 2368888889999999999999999999999999988764
Q ss_pred ----CcEEEeeccCCCcEEEEEEEEEecC---------------------------------------------------
Q 002296 806 ----NSWRTNSRKGSESVFVDYVAVDMKN--------------------------------------------------- 830 (940)
Q Consensus 806 ----~~~~~~~~~~~e~g~V~~v~~~~~~--------------------------------------------------- 830 (940)
.++.|++.++++.|+|++|++++.+
T Consensus 909 ka~~vkDtSL~vp~g~~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~g~t~~~ 988 (1342)
T 3lu0_C 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 (1342)
T ss_dssp SSSSBCCCCEECCTTCCCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred cccccccCcEecCCCCcEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence 1355899999999999999988642
Q ss_pred -------------------------------------------------CCC-----CceEEEEEEeeecCCCcccceec
Q 002296 831 -------------------------------------------------SKN-----LPQKANIRFRHTRNPIIGDKFSS 856 (940)
Q Consensus 831 -------------------------------------------------~~~-----~~~~v~i~~r~~R~p~iGDKf~s 856 (940)
.|+ ..+.|||++|+.|+|++||||||
T Consensus 989 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~kRk~qvGDK~Ag 1068 (1342)
T 3lu0_C 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 (1342)
T ss_dssp HTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEEEECCCTTCEEEC
T ss_pred HhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEEeccCCCCCCccc
Confidence 111 24789999999999999999999
Q ss_pred cCCCccEEeeeecCCCcCccCCCCCcCcEEeCCCCccccccHHHHHHHHHHHHHhhchhHHHHHhhhh
Q 002296 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKVVAYMENLWMQHHLQI 924 (940)
Q Consensus 857 RHGqKGvvs~i~~~~dMPf~~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~G~~~~~~~~~~ 924 (940)
|||||||||+|||+|||||+ +||++||||+|||||||||||||++|+++||||+..|..++..+.+.
T Consensus 1069 RHGnKGVis~I~p~EDMPf~-~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~aa~~~G~~i~~~~~~~ 1135 (1342)
T 3lu0_C 1069 RHGNKGVISKINPIEDMPYD-ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 (1342)
T ss_dssp SSSCCEEECCCCCTTTSCEE-TTEEECSEECCGGGTTSSCBTHHHHHHHHHHGGGTSSTHHHHTTTHH
T ss_pred ccCCCceEEEEecccCCCCC-CCCCCCcEEeCCCCCCCccchhhhhHHhhhHHHHhcCchHHHHHHhh
Confidence 99999999999999999999 99999999999999999999999999999999999998876554443
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.88 E-value=2.1e-23 Score=211.83 Aligned_cols=89 Identities=26% Similarity=0.444 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHH----------HHHHHHHH--------------------------------HHHHHcCCeeeeEEEE
Q 002296 14 ELVRHHIESFDYML----------DEGLSEMF--------------------------------DHCRQAKISYTGKLMA 51 (940)
Q Consensus 14 ~Lv~~hi~SFn~Fi----------~~gl~~ii--------------------------------~ecR~r~~TYsa~l~v 51 (940)
+|+++|++|||||+ ++||++++ +|||+|++||+|||+|
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~~~~~~~L~f~~~~l~~P~~~p~Ecr~r~lTYsapl~v 81 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQDECREKDLTYQAPLYA 81 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCSSSCCEEEEEEEEEECCCSSCHHHHHHTTCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccCCCCeEEEEEEEEEecCCCCCHHHHHhcCCCcceeEEE
Confidence 68999999999999 89999998 9999999999999999
Q ss_pred EEEEEEecCCCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccccCCcEEEEcCceeEEEEEEeccCCcc
Q 002296 52 DVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127 (940)
Q Consensus 52 ~i~~~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D~GGYFIInG~EKVIr~qi~~~~N~~ 127 (940)
++++... .+++++.++|++|+||||+ +||||||||+||||++|+++..|..
T Consensus 82 ~v~l~~~-~~~~i~~~~v~iG~iPlMt------------------------~gGyFIING~ERVIVsQe~r~~gel 132 (188)
T 3mlq_A 82 RLQLIHK-DTGLIKEDEVFLGHLPLMT------------------------EDGSFIINGADRVIVSQGGRTVGEL 132 (188)
T ss_dssp EEEEEET-TTCCEEEEEEEEEEEECCC------------------------TTSCEEETTEEEECCCCSSSCHHHH
T ss_pred EEEEEEC-CCceEEEEEEEEcccCEEC------------------------CCCEEEECCEEEEEEEeecccCCee
Confidence 9999754 3456778899999999999 4999999999999999998877743
No 7
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.80 E-value=2e-08 Score=108.12 Aligned_cols=163 Identities=14% Similarity=0.103 Sum_probs=114.3
Q ss_pred CCCcceeeEEEEEeeecCCCceEEEEEEEeCCeEEEEEEeecccccccHhhHHHhccCCCHHHHHHHhcccccchhhc--
Q 002296 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK-- 215 (940)
Q Consensus 138 ~~~~~t~~~v~~rs~~~~~~s~~~~l~y~~~g~~~l~~~~~~~~~~IPi~ilLkALg~~sD~eI~~~i~~~~~~~~~~-- 215 (940)
.+..|++..++.||. |+.+.++.++.+|+++..++ ++|+++||||||+ +++||++.+......+...
T Consensus 21 g~~~y~~~iIP~RGs-------Wlefe~d~~d~~~vrIdr~r---K~p~t~lLrAlG~-~~edIL~~Fy~~~~~~i~~~~ 89 (296)
T 3lti_A 21 GKVLYNARIIPYRGS-------WLDFEFDPKDNLFVRIDRRR---KLPATIILRALNY-TTEQILDLFFEKVIFEIRDNK 89 (296)
T ss_dssp --CCEEEEEECSBSC-------CEEEEECTTSCEEEEETTCC---CEETHHHHHHTTC-CHHHHHHHHCCEEEEEEETTE
T ss_pred CcEEEEEEEecCCCc-------eEEEEEcCCCeEEEEEcCcc---cchHHHHHHHcCC-ChHHHHHhcccceEEEEcCCc
Confidence 345789999999885 99999999999999998665 6999999999999 6889999883200000000
Q ss_pred ---------ccC---------------------------------------------------C------------CCCh
Q 002296 216 ---------EKG---------------------------------------------------A------------VGSP 223 (940)
Q Consensus 216 ---------~~~---------------------------------------------------~------------~~~~ 223 (940)
..+ + ..+.
T Consensus 90 ~~~~~~~~~~~g~~~~~di~~~g~v~~~~gk~it~r~~~~~~~~g~~~i~v~~~~l~g~~la~divd~~tGEvl~~a~~~ 169 (296)
T 3lti_A 90 LQMELVPERLRGETASFDIEANGXVYVEXGRRITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANME 169 (296)
T ss_dssp EEEECCGGGGTTCBCSSCEEETTEEEECTTCBCCHHHHHHHHHTTCCEEECCHHHHHTSBBCSCEECTTTCCEEECTTCB
T ss_pred eEeecChhHhcCceeeeeeccCCceeeecccchhHHHHHHHHHcCCceeecCHHHhccceeccceecccccceeeccccc
Confidence 000 0 0000
Q ss_pred hhHHHHH----------------------HHHHHHHhcccccHHHHHHHHhccccc---------------cccCCCCcc
Q 002296 224 LVSERVK----------------------IILAEVQDLSLTTRLQCLQHIGEHFQP---------------VIDGLQSES 266 (940)
Q Consensus 224 ~~~~~~~----------------------~ll~~~~~~~i~t~~~al~yig~~fr~---------------~~~~~~~~~ 266 (940)
.-.+.++ .+...+.+....|+++|+..|.+++|+ .++.+.+|+
T Consensus 170 it~~~l~~l~~~gi~~i~~l~~~~~~~~~~i~~tL~~D~~~s~~eAl~eIYr~lRpgep~t~e~a~~l~~~lFF~~~RYD 249 (296)
T 3lti_A 170 LSLDLLAXLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 249 (296)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHHCCCCSHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHHSCTTTCB
T ss_pred cCHHHHHHHHhcCcceEEEEEeccccchHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhhcCcCeec
Confidence 0011111 123344556678899999999988875 234688999
Q ss_pred HHHHHHHHHHhHhccCCCC--CcchHHHHHHHHHHHHHhcCCCCCCC
Q 002296 267 YYAVAETVIRDYIFVHLND--NNDKFNLLIFMLQKLFSLVDHTSVSD 311 (940)
Q Consensus 267 ~~~~~~~~L~~~ll~Hl~~--~~~K~~~L~~MirkLl~~~~g~~~~D 311 (940)
..++||..||++|-..++. .......++..+++|+.+..|....|
T Consensus 250 Lg~VGR~KlNkKL~l~~~~~~~~Lt~eDIl~~ikyLI~L~~g~~~vD 296 (296)
T 3lti_A 250 LSAVGRMXFNRSLLREEIEGSGILSXDDIIDVMXXLIDIRNGXGEVD 296 (296)
T ss_dssp CHHHHHHHHHHHTTCSCSCCCSSCCHHHHHHHHHHHHHHHHTSSCCC
T ss_pred hhhhchhHhhhhhCcCCCCCccEecHHHHHHHHHHHHHhhcCCCCCC
Confidence 9999999999999777663 33556779999999999999987764
No 8
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=98.61 E-value=6e-08 Score=99.84 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=58.5
Q ss_pred ceeec--cCCCChhhhcccCCCCCcccCcEecCCCcEEEEeecCC---------------------CcEEEeeccCCCcE
Q 002296 763 QKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------------------NSWRTNSRKGSESV 819 (940)
Q Consensus 763 ~~~~~--~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~---------------------~~~~~~~~~~~e~g 819 (940)
.+.++ +|+.+...+++||++||+++|++|++||||+||++|+. .++.|++.+.++.|
T Consensus 18 ~EeIT~dIPnv~e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tpEekLL~aIfg~k~~~vkDtSL~vp~G~~G 97 (228)
T 3tbi_B 18 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 97 (228)
T ss_dssp ECEESSCCSSCCHHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCHHHHHHHHHHCTTSSCEEECCEECCSSCBE
T ss_pred CeEEecCCCCccHHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCChHHHHHHHHhCCccccceeCcEecCCCCcE
Confidence 34554 67888889999999999999999999999999998864 13558999999999
Q ss_pred EEEEEEEEecC
Q 002296 820 FVDYVAVDMKN 830 (940)
Q Consensus 820 ~V~~v~~~~~~ 830 (940)
+|++|.+++..
T Consensus 98 ~VidV~if~r~ 108 (228)
T 3tbi_B 98 TVIDVQVFTRD 108 (228)
T ss_dssp EEEEEEEEEBT
T ss_pred EEEEEEEEecC
Confidence 99999999764
No 9
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=90.89 E-value=0.25 Score=49.98 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=48.8
Q ss_pred cccceecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCc
Q 002296 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391 (940)
Q Consensus 316 l~NkRv~l~G~Ll~~lf~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw 391 (940)
+-+|+.+++|+||+..++ ..|.++++.+++++.... .- .-.+++++ +.++++.+|+.||.|+++
T Consensus 121 IVsQe~r~~gell~~q~r----~gl~r~ek~~~e~~~~~~-~~----~~~~~~l~---n~kp~~~~ik~ff~ss~L 184 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFR----VGLARLARGVRERMVMGS-PD----TLTPAKLV---NSRPLEAALREFFSRSQL 184 (188)
T ss_dssp CCCCSSSCHHHHHHHHHH----HHHHHHHHHHHHHHHHSC-GG----GCCHHHHC---CCHHHHHHHHHHHHTCEE
T ss_pred EEEeecccCCeeeEEehh----hHHHHHHHHHHhhhcccc-cc----ccCcccch---hhHHHHHHHHHhhccccc
Confidence 468899999999987776 677889999999887632 11 11255555 467999999999999776
No 10
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=23.59 E-value=15 Score=31.79 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=16.5
Q ss_pred cEEeCCCCccccccHHHHHHHHHHHHHhhchhHHHHHhhhhhhhH
Q 002296 884 DLIINPHAFPSRMTIAMLLESVAAKVVAYMENLWMQHHLQIQSRK 928 (940)
Q Consensus 884 DiI~NPh~~PSRMtiGql~E~~~gk~~~~~G~~~~~~~~~~~~~~ 928 (940)
|.++=||+ +..||||.++-+++ ++++|.|.++|+
T Consensus 47 D~lvpp~~-~~~lTVGKiYA~ll----------I~d~~r~~k~r~ 80 (81)
T 3g43_E 47 DQVVPPAG-DDEVTVGKFYATFL----------IQEYFRKFKKRE 80 (81)
T ss_dssp HHCC---------CCCCHHHHHH----------HHHHHHHHHTC-
T ss_pred ccccCCCC-CCcEeehHHHHHHH----------HHHHHHHHHhcc
Confidence 55555665 58888887765433 477777777765
Done!