Query 002296
Match_columns 940
No_of_seqs 167 out of 1770
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 20:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002296.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002296hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfb_ e.29.1.1 (B:) RBP2 {Ba 100.0 6E-186 4E-190 1768.0 64.5 849 10-917 21-1025(1207)
2 d1smyc_ e.29.1.1 (C:) RNA-poly 100.0 7E-139 5E-143 1327.9 29.6 788 7-917 10-901 (1119)
3 d1smyc_ e.29.1.1 (C:) RNA-poly 96.8 0.00079 5.8E-08 83.3 8.4 44 627-670 529-572 (1119)
4 d1twfb_ e.29.1.1 (B:) RBP2 {Ba 46.1 1.1 8E-05 54.8 -2.4 40 629-668 602-642 (1207)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 24.3 20 0.0015 29.8 2.7 36 871-907 76-111 (112)
6 d1dcza_ b.84.1.1 (A:) Biotin c 11.6 1.7E+02 0.012 22.5 5.5 40 784-827 23-62 (77)
7 d1d2ea2 b.44.1.1 (A:349-451) E 10.6 93 0.0068 25.9 3.7 36 836-871 56-95 (103)
8 d1jr6a_ c.37.1.14 (A:) HCV hel 8.9 57 0.0041 28.5 1.6 16 855-871 122-137 (138)
9 d1bdoa_ b.84.1.1 (A:) Biotinyl 8.8 2.5E+02 0.019 21.8 5.6 40 784-827 26-65 (80)
10 d1ghja_ b.84.1.1 (A:) Lipoyl d 8.6 2E+02 0.015 22.3 4.9 39 784-826 22-60 (79)
No 1
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=5.7e-186 Score=1768.03 Aligned_cols=849 Identities=27% Similarity=0.404 Sum_probs=700.5
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHH
Q 002296 10 EPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------------------DHC 38 (940)
Q Consensus 10 ~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------------------~ec 38 (940)
...++||+|||||||+||++||++|+ +||
T Consensus 21 f~~~~Lv~~qidSFn~Fi~~gi~~Ii~~~~pi~~~~~~~~~~~~~~~~~~~~l~f~~i~i~kP~~~e~~g~~~~l~P~Ec 100 (1207)
T d1twfb_ 21 FREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEA 100 (1207)
T ss_dssp HHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEECCSSSCCEECCHHHH
T ss_pred hCCCCccHHHHHHHHHHHHHCHHHHHHhcCCeEeeccccccccccCCCceEEEEEEEEEEcCCeEEcCCCcccccCHHHH
Confidence 34689999999999999999999997 799
Q ss_pred HHcCCeeeeEEEEEEEEEEecC-----------------CCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccc
Q 002296 39 RQAKISYTGKLMADVEFQYLDA-----------------GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA 101 (940)
Q Consensus 39 R~r~~TYsa~l~v~i~~~~~~~-----------------~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~ 101 (940)
|+|++||+|+|+|+|++.+... ......++|+||+|||||+|++|||++++++++++.||||+
T Consensus 101 R~r~lTYs~~l~v~i~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~v~iG~IPIMv~S~~C~L~~~~~~~l~~~gEc~~ 180 (1207)
T d1twfb_ 101 RLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPF 180 (1207)
T ss_dssp HHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGGTCCHHHHHHTTCCTT
T ss_pred HhcCCccceEEEEEEEEEEEecccccccccceeecccccccceeeeeEEEEECCEEeCCCcccCCCcCHHHHHHcCCCCC
Confidence 9999999999999998754210 11223567999999999999999999999999999999999
Q ss_pred cCCcEEEEcCceeEEEEEEeccCCccEEEEeccccCCCCcceeeEEEEEeeecCCCc--eEEEEEEEe-CCe--EEEEEE
Q 002296 102 EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS--VTLKLYYLL-NGS--VRLGFW 176 (940)
Q Consensus 102 D~GGYFIInG~EKVIr~qi~~~~N~~~~~~r~~~~~~~~~~t~~~v~~rs~~~~~~s--~~~~l~y~~-~g~--~~l~~~ 176 (940)
|+||||||||+||||++|+...+|+++++.+ ++..++.+++.+||+.+++.. .|+.+.+.. ++. ..+++.
T Consensus 181 D~GGYFIING~EKVIi~Q~r~~~n~~~v~~~-----~~~~~~~~~~~irS~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (1207)
T d1twfb_ 181 DMGGYFIINGSEKVLIAQERSAGNIVQVFKK-----AAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKAT 255 (1207)
T ss_dssp CCCCSEEETTEEEEECEEEEECSSCCEEEEC-----CTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCSSCSSCCEEEE
T ss_pred CCCcEEEECCEEEEEEEEEecCCCeEEEEEc-----CCCCceEEEEEEEEEeCCCCceeEEEEEEEEEcCCccceEEEEE
Confidence 9999999999999999999999999987654 456778899999999876543 445544332 221 234555
Q ss_pred eecccccccHhhHHHhccCCCHHHHHHHhcccccchhhcccCCCCChhhHHHHHHHHHHHHhcccccHHHHHHHHhcccc
Q 002296 177 LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256 (940)
Q Consensus 177 ~~~~~~~IPi~ilLkALg~~sD~eI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~i~t~~~al~yig~~fr 256 (940)
+.+...+||+++||||||..||+||++.++. +..+..+.+.+...++. ...+.|+++|+.|||++++
T Consensus 256 ~~~~~~~IPl~illrALG~~sD~eI~~~i~~-----------~~~~~~~~~~l~~~~~~--~~~~~t~e~al~yig~~~~ 322 (1207)
T d1twfb_ 256 LPYIKQDIPIVIIFRALGIIPDGEILEHICY-----------DVNDWQMLEMLKPCVED--GFVIQDRETALDFIGRRGT 322 (1207)
T ss_dssp CTTCSSCEEHHHHHHHTTCCSHHHHHHHHCC-----------CTTCHHHHHHHHHHHHH--TTTCCSHHHHHHHHHHTTS
T ss_pred eehhcccchHHHHHHHhCCcchhhhhhhccc-----------CchhhHHHHHHHHHHhh--ccchhhHHHHHHHHHhhcc
Confidence 5555558999999999999999999999972 11222222333222222 2468899999999999876
Q ss_pred ccccCCCCccHHHHHHHHHHhHhccCCCC----CcchHHHHHHHHHHHHHhcCCCCCCCCccccccceecccchhHHHHH
Q 002296 257 PVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332 (940)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~ll~Hl~~----~~~K~~~L~~MirkLl~~~~g~~~~Dd~D~l~NkRv~l~G~Ll~~lf 332 (940)
.. ........+.++++|++.+|||++. +..|+.+|++|++||+.+..|.+.+||+|||+||||+++|+||+.+|
T Consensus 323 ~~--~~~~~~~~~~~~~iL~~~llpHl~~~~~~~~~K~~~L~~mi~kll~~~~g~~~~dd~D~~~nkrv~~~G~Ll~~~f 400 (1207)
T d1twfb_ 323 AL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 400 (1207)
T ss_dssp CT--TSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHH
T ss_pred cc--CCCccchHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHhhhcccCCcchhhhccchhhhHHHHHHHHH
Confidence 43 2345567889999999999999984 34799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEcccc
Q 002296 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412 (940)
Q Consensus 333 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvleRl 412 (940)
|+.|+++++.+++.+.+...+ .+.++ +..+ .+++.||++|++||+||||.++.+ .++|++|+||+|+|+
T Consensus 401 r~~~~~~~~~i~~~~~~~~~~-~~~~~------~~~~---~~~~~it~~i~~~~~TGn~~~~~~-~~~~~~G~sq~l~r~ 469 (1207)
T d1twfb_ 401 KTLFKKLTKDIFRYMQRTVEE-AHDFN------MKLA---INAKTITSGLKYALATGNWGEQKK-AMSSRAGVSQVLNRY 469 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCC---------------CC---CCTHHHHHHHHHHHHHCCCC----------CCCEEECCCS
T ss_pred HHHHHHHHHHHHhhhcccccc-ccccC------hhhh---hccCcHHHHHHHHHhcCccccccc-ccccccchhhhhhhc
Confidence 999999888877766533221 11111 1111 235689999999999999988765 568999999999999
Q ss_pred chHHHhhhhcccccCCcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccchhhHHH
Q 002296 413 NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492 (940)
Q Consensus 413 n~~~~lSh~Rrv~rg~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~~~~i 492 (940)
||+++|||+||||+| +++++|+++||+||||||||+||+|||||++||||||||++|+|+.+.+.. .+
T Consensus 470 n~l~~lSh~Rrv~~~-~~~~~k~~~~R~Lhps~~G~iCPveTPEG~~~GLv~~La~~a~i~~~~~~~-----------~~ 537 (1207)
T d1twfb_ 470 TYSSTLSHLRRTNTP-IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM-----------PI 537 (1207)
T ss_dssp SHHHHHHHHTEEECC-C------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCH-----------HH
T ss_pred CHHHHHHhhhcccCC-cccccccchhhhcchhhccceeeeeCCCCCcccceeccceeeeeccccccc-----------ee
Confidence 999999999999985 779999999999999999999999999999999999999999999876654 47
Q ss_pred HHHHHhCCCeecCCccccCCCCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCCCCCCCceeEEEEcCCCCCCCce
Q 002296 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572 (940)
Q Consensus 493 ~~~L~~~g~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~~~i 572 (940)
.++|..+|+.+.. ........+.++||+||.|+|++ .++..+++.+|.+|+.| .++.++++.+. ....++
T Consensus 538 ~~~l~~~g~~~~~-~~~~~~~~~~~~V~~nG~~~G~~--~~~~~l~~~lr~~R~~g--~i~~~~s~~~~-----~~~~~i 607 (1207)
T d1twfb_ 538 ITFLSEWGMEPLE-DYVPHQSPDATRVFVNGVWHGVH--RNPARLMETLRTLRRKG--DINPEVSMIRD-----IREKEL 607 (1207)
T ss_dssp HHHHHHTTCEEGG-GCCGGGCTTCEEEEETTEEEEEE--SCHHHHHHHHHHHHHHT--SSCTTCEEEEE-----TTTTEE
T ss_pred eEEeeccCcccce-eeeeccccccceeeeeeeEEEEE--cchheeehheeeeeecc--Cccceeeeeee-----ccccce
Confidence 7888999998763 23333345678999999999997 46789999999999998 56766666433 345789
Q ss_pred EEecCCCceeceEEeccCCCC----------------------------------------CCCceeeecccceeeeeee
Q 002296 573 YLFTSPPKFVRPVRNISLPSE----------------------------------------ESQNIELIGPFEQVFMEIR 612 (940)
Q Consensus 573 ~i~~d~gR~~RPv~~~~~~~~----------------------------------------~~~~iE~i~~~Eq~~~~Ia 612 (940)
+|+||+||++|||+.+.++.. ..|.|||||++||+++.||
T Consensus 608 ~i~td~Gr~~rPlfi~~nd~~~~~~~~~mqrq~v~~l~~~e~~~v~~~~e~~~~~~~~~~~~~g~ieyid~~E~~~~~Ia 687 (1207)
T d1twfb_ 608 KIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIA 687 (1207)
T ss_dssp EEECCSCCEEEEEEEEECCCTTSSCEESCCHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEE
T ss_pred EEEecCccccCCceeecchhhhcccceeeeHhhHhhhhccccccccccccchhhccccccccCCceeeecchhcceEEEE
Confidence 999999999999987765421 1467999999999999999
Q ss_pred cCCCCCCCCC-------------------CCccceecccCCCccccceeecccCCCCCCCccchhhccccccccccccee
Q 002296 613 CPDGGDGGRR-------------------NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673 (940)
Q Consensus 613 ~~~~~~~~~~-------------------~~~~~th~EI~p~~ilsv~AslIPF~~HNqspRn~yq~~M~KQaig~~~~n 673 (940)
+.++++.... ....+||+||+|+.|||++|++|||+||||||||+|||||+|||||++++|
T Consensus 688 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~th~Ei~p~~ilg~~as~iPf~~hNqSpRn~yq~qm~KQa~G~~~~~ 767 (1207)
T d1twfb_ 688 MQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 767 (1207)
T ss_dssp SSGGGGCC---------CCCTTSCCCCCCCCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBCSCTT
T ss_pred ecccccccccccccccccccchhheeeecccccccccccccceEEeeecceEEecccccccceeecccCCcccCCccccc
Confidence 9998875311 013489999999999999999999999999999999999999999999999
Q ss_pred EEEeccCceeeccCCCeeeEeccceeecCCCCCCCCceeEEEEEeccCCCCCceEEEecchhccCcceeeEEEEEEEEee
Q 002296 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753 (940)
Q Consensus 674 ~~~R~d~~~y~L~~~Q~Plv~t~~~~~~~~~~~~~G~N~~Vav~~y~Gyn~EDaiiink~s~~rG~~~~~~~~~~~~~~~ 753 (940)
+..|.|++.|+|+|||+|||+|+.++.++++++|+|+||+||||||+||||||||||||+|+||||||+++|++|.+++.
T Consensus 768 ~~~r~D~~~~~l~~pQ~Plv~t~~~~~~~~~e~p~G~N~iVAvmsy~GYN~EDAiIiNk~si~rG~f~s~~~k~~~~~~~ 847 (1207)
T d1twfb_ 768 YNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEK 847 (1207)
T ss_dssp TTTCCCSEEEEESSCBCCSEECTTHHHHTTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceeccccceeEecCCCceeeccchhhhhhhcccchhceEEEEEeccCcccccccccchhhhhhcccceeeeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ccCCCcCccceeeccCC------CChhhhcccCCCCCcccCcEecCCCcEEEEeecCCC--------------cEEEeec
Q 002296 754 DDGNKVDRGQKLFRRNK------DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN--------------SWRTNSR 813 (940)
Q Consensus 754 ~~~~~~~~~~~~~~~~~------~~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~~--------------~~~~~~~ 813 (940)
.... ...+.|..|. .....+++||+||+|++|++|++||+|+||+.+... ++.++.+
T Consensus 848 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdilvgk~~p~~~~~~~~~~~~~~~~~~~~s~~~ 924 (1207)
T d1twfb_ 848 KYGM---SITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPL 924 (1207)
T ss_dssp CSCT---TCCCEESCCCCSSSCBCCSSCGGGCCTTSBCCTTCEECTTCEEECEECCCC-------------CCBBCCEEC
T ss_pred cccc---cccccccccccccccccchhhhhcccccccccccccccCCceeeeeeeccCCchhhhhhccccccccceeEEc
Confidence 3221 2334444442 223457899999999999999999999999776532 2447788
Q ss_pred cCCCcEEEEEEEEEecCCCCCceEEEEEEeeecCCCcccceeccCCCccEEeeeecCCCcCccCCCCCcCcEEeCCCCcc
Q 002296 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893 (940)
Q Consensus 814 ~~~e~g~V~~v~~~~~~~~~~~~~v~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dMPf~~~~G~~pDiI~NPh~~P 893 (940)
+.+++|+||+|.++.+.+ +.+.++|++|+.|+|+||||||||||||||||+|||+|||||| +||++|||||||||||
T Consensus 925 ~~~~~g~V~~v~~~~~~~--~~~~~kv~i~~~R~p~iGDKfasRhGqKGv~s~i~p~eDMPf~-~dG~~pDiI~NP~g~P 1001 (1207)
T d1twfb_ 925 RSTENGIVDQVLVTTNQD--GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFT-AEGIVPDLIINPHAIP 1001 (1207)
T ss_dssp CTTCCEEEEEEEEEECSS--SCEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCEE-TTSCCCSEEECGGGST
T ss_pred cCCCCeEEEEEEEeeccc--ccceeeEEEEEEeccchhhhhhhccCCcceeeeeechhhCCcC-CCCCCccEEECCCcCc
Confidence 889999999999998765 4689999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhchhHH
Q 002296 894 SRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 894 SRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
||||||||+|+++|||||++|.++
T Consensus 1002 SRMtiGql~E~~~gk~~~~~g~~~ 1025 (1207)
T d1twfb_ 1002 SRMTVAHLIECLLSKVAALSGNEG 1025 (1207)
T ss_dssp TTTCHHHHHHHHHHHHHHHHCSCE
T ss_pred ccCcHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999987
No 2
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=6.9e-139 Score=1327.93 Aligned_cols=788 Identities=18% Similarity=0.218 Sum_probs=559.4
Q ss_pred CCccCchhhHHHHHHHHHHHHHH----------HHHHHH--------------------------------HHHHHcCCe
Q 002296 7 ADFEPLRELVRHHIESFDYMLDE----------GLSEMF--------------------------------DHCRQAKIS 44 (940)
Q Consensus 7 ~~~~~~~~Lv~~hi~SFn~Fi~~----------gl~~ii--------------------------------~ecR~r~~T 44 (940)
+....+|+|+++|++|||+||++ ||++++ +|||+|++|
T Consensus 10 ~~~~~~p~Lv~~Qi~Sfn~Fi~~~~~~~~~~~~gl~~~~~~~~pi~~~~~~~~~~~L~f~~~~~~~P~~~p~EcR~r~~T 89 (1119)
T d1smyc_ 10 REVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLT 89 (1119)
T ss_dssp CCCSCCCCTTHHHHHHHHHHTCCSSCTTSSCCCHHHHHHHHHCCCCCCCSSSCCCCEEEEEEECCCCSSCHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcCCchhhhccccHHHHHhhcCCeeccCCCCceEEEEEEEEEEcCCCCCHHHHHhhCCc
Confidence 34567999999999999999965 788777 899999999
Q ss_pred eeeEEEEEEEEEEecCCCceEeeEEeecccceeecCCCccCCCCChHHHHhcccccccCCcEEEEcCceeEEEEEEeccC
Q 002296 45 YTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124 (940)
Q Consensus 45 Ysa~l~v~i~~~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~~~D~GGYFIInG~EKVIr~qi~~~~ 124 (940)
|+|||+|+|++... .++.+++++|+||+|||||+| |||||||+||||++|+.+++
T Consensus 90 Ys~~l~v~i~~~~~-~~~~~~~~~v~iG~iPiM~~S------------------------GYFIInG~ErVii~Q~~~sp 144 (1119)
T d1smyc_ 90 YQAPLYARLQLIHK-DTGLIKEDEVFLGHIPLMTED------------------------GSFIINGADRVIVSQIHRSP 144 (1119)
T ss_dssp CEECCEEEEEECCS-SSCCCCCCCCCCCCEECCCSS------------------------SCEECSSSEEEECEEEEECS
T ss_pred ccccEEEEEEEEEC-CcceEEEEEEEEEECCEECCC------------------------ceEEEcCeEEEEEEEEecCC
Confidence 99999999998654 244556678999999999996 99999999999999999999
Q ss_pred CccEEEEeccccCCCCcceeeEEEEEeeecCCCceEEEEEEEeCCeEEEEEEeecccccccHhhHHHhccCCCHHHHHHH
Q 002296 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204 (940)
Q Consensus 125 N~~~~~~r~~~~~~~~~~t~~~v~~rs~~~~~~s~~~~l~y~~~g~~~l~~~~~~~~~~IPi~ilLkALg~~sD~eI~~~ 204 (940)
|.++.. ...+.+ .+.+.+|++... +.|+.+++.+||.+++++. ++ +||+++||||||+.+|+++ ..
T Consensus 145 n~~~~~---~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~i~--~~--~IPi~illrALG~~~d~i~-~~ 210 (1119)
T d1smyc_ 145 GVYFTP---DPARPG----RYIASIIPLPKR--GPWIDLEVEPNGVVSMKVN--KR--KFPLVLLLRVLGYDQETLA-RE 210 (1119)
T ss_dssp SEECCC---CSSSSS----CCCCEECCSSSS--SCCBEEEEETTTEEEEESS--SS--CCCHHHHHHHHTCCHHHHH-HH
T ss_pred CEEEEe---cCCCCC----CEEEEEEEEcCC--CCeEEEEEcCCCEEEEEEc--Ce--EEcHHHHHHHhCCCHHHHH-HH
Confidence 965432 222222 234456776433 4477889999999998874 22 5999999999999877544 44
Q ss_pred hcccccchhhcccCCCCChhhH----HHHHHHHHHHHhcccccHHHHHHHHhccccccccCCCCccHHHHHHHHHHhHhc
Q 002296 205 LTCCYDEKYKKEKGAVGSPLVS----ERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF 280 (940)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~i~t~~~al~yig~~fr~~~~~~~~~~~~~~~~~~L~~~ll 280 (940)
+.. +++.. .+-.++..+. +.+..+........+.|+++|++||+++|+. +..++..++++..+++.++
T Consensus 211 ~~~-~~el~---~~~~~~~~~~~~~~~al~~~~~~~~~~~~~t~~~al~~i~~~f~~----~~~~~~~~~~~~~~~~~l~ 282 (1119)
T d1smyc_ 211 LGA-YGELV---QGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIAD----PRRYDLGEAGRYKAEEKLG 282 (1119)
T ss_dssp TSS-SCGGG---GGTSSCHHHHTCHHHHHHHHHHHSSSCCCSCCTTHHHHHTTSTTT----TCCSSTTTSSHHHHHHHSC
T ss_pred hcc-cHHHH---HHHHhhhhhcCCHHHHHHHHHHHhccCCCCcHHHHHHHHhccccc----cccccchhhhHHHHHHHhh
Confidence 431 32211 1111222221 2233333444456789999999999999863 4455566778888888888
Q ss_pred cCCC--------CCcchHHHHHHHHHHHHHhcCC--CCCCCCccccccceecccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002296 281 VHLN--------DNNDKFNLLIFMLQKLFSLVDH--TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350 (940)
Q Consensus 281 ~Hl~--------~~~~K~~~L~~MirkLl~~~~g--~~~~Dd~D~l~NkRv~l~G~Ll~~lf~~~~~~~l~~~~~~i~~~ 350 (940)
+|+. +...|+.+++.|+++|+.+..| ...+||+|||+||||+++|+||+.+||+.|+++.+.++..+...
T Consensus 283 ~~l~~~~~~~~~~~~~k~~~~~~~~~~ll~l~~g~~~~~~Dd~D~~~nKRv~laG~Ll~~lfr~~l~~~~k~~~~~~~~~ 362 (1119)
T d1smyc_ 283 IRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMG 362 (1119)
T ss_dssp SCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHTSSCSSCCCCCTTSTTTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhccccccccccceehHHHHHHHHHHHHHHHhcCCcccchhHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 7765 3446777888899999887776 46789999999999999999999999999988888777665432
Q ss_pred HHhcCCcccccchHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEccccchHHHhhh---hcccccC
Q 002296 351 IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF---FRAVHRG 427 (940)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~sGvsqvleRln~~~~lSh---~Rrv~rg 427 (940)
... .... . ..++++.++.+++++|+||+| +|+++|+|+++++|| +|++++|
T Consensus 363 ~~~---~~~~------~---~~~~~~~i~~~i~~~~~~~~~--------------sq~~~~~~~ls~ls~lrr~~s~~~g 416 (1119)
T d1smyc_ 363 SED---SLTP------A---KLVNSRPLEAAIREFFSRSQL--------------SQFKDETNPLSSLRHKRRISALGPG 416 (1119)
T ss_dssp CSS---CCSS------T---TSCCSHHHHHHHHHHHHTCTT--------------EEECCCSSHHHHHHHHTCEESCCSS
T ss_pred ccc---cCCh------h---hhcccchHHHHHHHhhccCCc--------------ccceecccceeEEeeeeeEEecccc
Confidence 211 1111 0 112356899999999998877 344555555555555 5555688
Q ss_pred CcccccccccccccCCCCccccccCCCCCCccccccccccceeEEeeccCCCCcccccchhhHHHHHHHHhCCCeecCCc
Q 002296 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507 (940)
Q Consensus 428 ~~~~~~K~t~vR~Lhps~wGfiCPveTPEG~~cGLvk~LA~~~~Is~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~ 507 (940)
++++++|+++||+||||||||+||+|||||++||||||||++|+|+.....+.+ +.... .|+.. .+
T Consensus 417 ~~~r~~k~~~~R~LhpSqWG~ICPveTPEG~~CGLVknLAl~~~v~~~~~~~~~---~~~~~---------~~~v~--~~ 482 (1119)
T d1smyc_ 417 GLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTP---YRRVV---------GGVVT--DE 482 (1119)
T ss_dssp SSCCSSCCTTTSSCCTTCSSSSCSSCSCSSSSSSSEECCBTTCEECSSSCEEBC---CEECC---------TTBCC--SC
T ss_pred ccccccCCCcccccchhhcceeeccccCCCcceeeecccccccccCCCCCcccc---eeEEe---------CcEEc--ce
Confidence 999999999999999999999999999999999999999999999865433311 11110 01110 00
Q ss_pred cccCC--CCcceEEEECCEEEeeecCccHHHHHHHHHHHHHhcCC--CCCCCceeEEEEcCCCCCCCceEEecCCCceec
Q 002296 508 LVKSG--PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS--VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583 (940)
Q Consensus 508 ~~~~~--~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~--~i~~~~ei~~v~~~~~~~~~~i~i~~d~gR~~R 583 (940)
+.... ....+.+...+..+..... ....+..|+.+.. ..+...++ + ........+.|+.+|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~ 547 (1119)
T d1smyc_ 483 VVYMTATEEDRYTIAQANTPLEGNRI------AAERVVARRKGEPVIVSPEEVEF--M-------DVSPKQVFSVNTNLI 547 (1119)
T ss_dssp BCCBCHHHHHTSCEECSCSCBSSSBB------CCSSEEEECSSCEEEECTTTCCE--E-------CCCGGGGSBTTTTTC
T ss_pred eEEcccccccceeEEeeceEecCCcc------ceeEEEEeecCceEEecccccee--c-------ccccceecccccccc
Confidence 00000 0001112222211111100 0011112222210 01111111 1 112334567788889
Q ss_pred eEEeccCCCC-------CCCceeeecccceeeeeeecCCC-----CCCCCCCCccceecccCCCccccceeecccCCCCC
Q 002296 584 PVRNISLPSE-------ESQNIELIGPFEQVFMEIRCPDG-----GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651 (940)
Q Consensus 584 Pv~~~~~~~~-------~~~~iE~i~~~Eq~~~~Ia~~~~-----~~~~~~~~~~~th~EI~p~~ilsv~AslIPF~~HN 651 (940)
|++....... ....+++++..++....+..... ..........++|+|+++..+++..|++|||++||
T Consensus 548 p~l~~~d~~r~l~~~~~~~~~~~li~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~a~~ipy~~~n 627 (1119)
T d1smyc_ 548 PFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRR 627 (1119)
T ss_dssp TTGGGBCHHHHHHHHHHHHTBCCCSSCCCCSEECSCHHHHHHHTTCSBCCSSSEEECCCCSSBCCEEETTTEEECCBCCC
T ss_pred cccccCccccccccccccccccceeccccccccccceecccccceeeEeeeccceEEeeecceEEEEcccCccccccccc
Confidence 9886643210 01123333333332221111000 00000001237999999999999999999999999
Q ss_pred CCccchhhccccc--ccccccceeEEEeccCceeeccCCCeeeEeccceeecCCCCCCCCceeEEEEEeccCCCCCceEE
Q 002296 652 QSPRNMYQCQMAK--QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729 (940)
Q Consensus 652 qspRn~yq~~M~K--Qaig~~~~n~~~R~d~~~y~L~~~Q~Plv~t~~~~~~~~~~~~~G~N~~Vav~~y~Gyn~EDaii 729 (940)
|+|||+++|.|++ +++|.. .+++.+++.+... ..+++|+|+||+||||||+|||||||||
T Consensus 628 ~~~~n~~~~~~q~p~~~~~~~---------------~~~~~~l~~~~~~---~~~~~p~G~NaiVAv~sytGYn~EDAiI 689 (1119)
T d1smyc_ 628 FYRSNQGTALDQRPRVVVGQR---------------VRKGDLLADGPAS---ENGFLALGQNVLVAIMPFDGYNFEDAIV 689 (1119)
T ss_dssp SCCCTTSBCCCCCBCCCSSCC---------------BCTTCCSBCCTTB---SSSSBCSSEEEEEECSCCSSTTCSSEEE
T ss_pred ccccchhHHhcCCccccccce---------------eecCceeccCccc---ccccccCccceEEEEecccccchhhhhh
Confidence 9999999997765 444432 2455566555443 3578999999999999999999999999
Q ss_pred EecchhccCcceeeEEEEEEEEeeccCCCcCccceeeccCCCChhhhcccCCCCCcccCcEecCCCcEEEEeecCC----
Q 002296 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---- 805 (940)
Q Consensus 730 ink~s~~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~~~~~~~---- 805 (940)
|||+|+||||||+++|++|.+++........ ......|......+++||+||||++|++|++||||+||+++..
T Consensus 690 iNkssidRG~~~s~~~k~y~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdili~k~~~~~~~~~ 767 (1119)
T d1smyc_ 690 ISEELLKRDFYTSIHIERYEIEARDTKLGPE--RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEP 767 (1119)
T ss_dssp EETHHHHTTCSCEEEEEEEEEEEECCTTCCC--BCCSCCTTSCSTTTGGGTTTSBCCTTCBCCTTCEEECCEECSSSSSC
T ss_pred hcchhhhccccceeeeeEEEeeeeeccCCCc--eecccCcCcChhhHhhccccCCcCCCCEeCCCCEEEEEeccCCCCCC
Confidence 9999999999999999999988654332111 1111234556667899999999999999999999999987542
Q ss_pred -----------------CcEEEeeccCCCcEEEEEEEEEecCCC------CCceEEEEEEeeecCCCcccceeccCCCcc
Q 002296 806 -----------------NSWRTNSRKGSESVFVDYVAVDMKNSK------NLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862 (940)
Q Consensus 806 -----------------~~~~~~~~~~~e~g~V~~v~~~~~~~~------~~~~~v~i~~r~~R~p~iGDKf~sRHGqKG 862 (940)
.++.++.++.+++|+|++|.++.++++ .....|+|++|+.|+|+|||||||||||||
T Consensus 768 ~~~~~~~~~~~~~~~~~~k~~s~~~~~~~~g~v~~v~~~~~~~~~~~~~~~~~~~vkv~~r~~R~p~iGDKfssRHGQKG 847 (1119)
T d1smyc_ 768 TPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKG 847 (1119)
T ss_dssp CHHHHHHHHHHHSCSCCCEECCEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEECCCTTCEEECTTSCEE
T ss_pred ChHHhhhhcccccccceeeeeeeccCCCCCCEEEEEEEEeccccccccCCCcceEEEEEEeeeeeccccchhhhhccCCc
Confidence 235588889999999999999876543 124679999999999999999999999999
Q ss_pred EEeeeecCCCcCccCCCCCcCcEEeCCCCccccccHHHHHHHHHHHHHhhchhHH
Q 002296 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKVVAYMENLW 917 (940)
Q Consensus 863 vvs~i~~~~dMPf~~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~G~~~ 917 (940)
|||++||+|||||| ++|++|||||||||||||||||||+|+++|||||++|.++
T Consensus 848 v~g~i~~~eDMPft-~~Gi~PDiIiNPhg~PSRMTiG~liE~~~gk~~~~~g~~~ 901 (1119)
T d1smyc_ 848 VVAKILPVEDMPHL-PDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRY 901 (1119)
T ss_dssp EEEEEECTTTSCBC-SSSCBCSEEECSTTTTTTTBTHHHHHHHHHHHHHHTTCEE
T ss_pred cceeeechhhCccc-cCCcceeEEeccccccccccHHHHHHHHHHHHHhhcCcee
Confidence 99999999999999 9999999999999999999999999999999999999886
No 3
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]}
Probab=96.77 E-value=0.00079 Score=83.29 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=41.6
Q ss_pred ceecccCCCccccceeecccCCCCCCCccchhhccccccccccc
Q 002296 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670 (940)
Q Consensus 627 ~th~EI~p~~ilsv~AslIPF~~HNqspRn~yq~~M~KQaig~~ 670 (940)
.+++++.|..++++.++++||.+||+++|++++++|++|+++..
T Consensus 529 ~~~~~~~~~~~~~~~~~l~p~l~~~d~~r~l~~~~~~~~~~~li 572 (1119)
T d1smyc_ 529 VEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLI 572 (1119)
T ss_dssp CCEECCCGGGGSBTTTTTCTTGGGBCHHHHHHHHHHHHTBCCCS
T ss_pred ceecccccceecccccccccccccCcccccccccccccccccee
Confidence 57899999999999999999999999999999999999999774
No 4
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.12 E-value=1.1 Score=54.79 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=33.6
Q ss_pred ecccCCCccccceeeccc-CCCCCCCccchhhccccccccc
Q 002296 629 HEEIHPTGMLSVVANLTP-YSDHNQSPRNMYQCQMAKQTMG 668 (940)
Q Consensus 629 h~EI~p~~ilsv~AslIP-F~~HNqspRn~yq~~M~KQaig 668 (940)
..+..+....+..+.++| |..||+++|+.|+++|+||++.
T Consensus 602 ~~~~~i~i~td~Gr~~rPlfi~~nd~~~~~~~~~mqrq~v~ 642 (1207)
T d1twfb_ 602 IREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 642 (1207)
T ss_dssp TTTTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHHHH
T ss_pred ccccceEEEecCccccCCceeecchhhhcccceeeeHhhHh
Confidence 334445556678889999 9999999999999999999986
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=24.29 E-value=20 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCcCccCCCCCcCcEEeCCCCccccccHHHHHHHHHH
Q 002296 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907 (940)
Q Consensus 871 ~dMPf~~~~G~~pDiI~NPh~~PSRMtiGql~E~~~g 907 (940)
...|-- -.|-.++-.=-||||-|||-+-..++.|.|
T Consensus 76 ~~FPly-l~g~~~~~yGIphGFsSR~~L~ryl~~mFg 111 (112)
T d2g7ja1 76 QNFPLY-LGGETHEHYGIPHGFSSRIALERYLNGLFG 111 (112)
T ss_dssp CCSCCC-CSSSSCCEEECEECCSCHHHHHHHHHHHHT
T ss_pred hcCCcc-ccccchhhcCCCcccchHHHHHHHHHHHhc
Confidence 356766 689899999999999999999999888876
No 6
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=11.62 E-value=1.7e+02 Score=22.55 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=27.1
Q ss_pred CcccCcEecCCCcEEEEeecCCCcEEEeeccCCCcEEEEEEEEE
Q 002296 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVD 827 (940)
Q Consensus 784 i~~~g~~v~~gd~l~~~~~~~~~~~~~~~~~~~e~g~V~~v~~~ 827 (940)
++++|+.|++||+|+-.-..+. ....+....|+|.++.+-
T Consensus 23 ~V~~Gd~V~~G~~l~~vE~~K~----~~~i~ap~~G~V~~i~v~ 62 (77)
T d1dcza_ 23 LVKEGDTVKAGQTVLVLEAMKM----ETEINAPTDGKVEKVLVK 62 (77)
T ss_dssp CCCTTCEECTTSEEEEEEETTE----EEEEECSSSEEEEEECCC
T ss_pred EcCCCCEEeCCCeEEEEEccCc----cEEEEeCCCEEEEEEeeC
Confidence 5889999999999975433221 122344578998877753
No 7
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=10.65 E-value=93 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.1
Q ss_pred eEEEEEEeeecCCCcccceeccCCCc----cEEeeeecCC
Q 002296 836 QKANIRFRHTRNPIIGDKFSSRHGQK----GVCSQLWPDI 871 (940)
Q Consensus 836 ~~v~i~~r~~R~p~iGDKf~sRHGqK----Gvvs~i~~~~ 871 (940)
..+.+++..+-.++.|.+|+=|.|.+ |||..|+|..
T Consensus 56 ~~v~~~l~~P~~le~g~rF~iREggrTVg~GvVteil~~~ 95 (103)
T d1d2ea2 56 LKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMT 95 (103)
T ss_dssp EEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECCCCC
T ss_pred eEEEEEECCceeecCCCEEEEEECCEEEEEEEEEEccCcc
Confidence 34666666667799999999999974 7888887754
No 8
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=8.90 E-value=57 Score=28.50 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=11.5
Q ss_pred eccCCCccEEeeeecCC
Q 002296 855 SSRHGQKGVCSQLWPDI 871 (940)
Q Consensus 855 ~sRHGqKGvvs~i~~~~ 871 (940)
++| |++|++.++.|.|
T Consensus 122 ~gR-g~~G~~~~i~~~e 137 (138)
T d1jr6a_ 122 TGR-GKPGIYRFVAPGE 137 (138)
T ss_dssp BCS-SSCEEEEECCSSC
T ss_pred ccC-CCCcEEEEEcCCC
Confidence 567 7788777777765
No 9
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}
Probab=8.81 E-value=2.5e+02 Score=21.79 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=26.5
Q ss_pred CcccCcEecCCCcEEEEeecCCCcEEEeeccCCCcEEEEEEEEE
Q 002296 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVD 827 (940)
Q Consensus 784 i~~~g~~v~~gd~l~~~~~~~~~~~~~~~~~~~e~g~V~~v~~~ 827 (940)
++++|+.|++||+|+-.-.-| -. ...+....|+|.+|.+.
T Consensus 26 ~V~~Gd~V~~Gq~l~~iEamK--m~--~~i~a~~~G~v~~i~v~ 65 (80)
T d1bdoa_ 26 FIEVGQKVNVGDTLCIVEAMK--MM--NQIEADKSGTVKAILVE 65 (80)
T ss_dssp SCCTTCEECTTCEEEEEEETT--EE--EEEECSSCEEEEEECSC
T ss_pred EccCCCeEeCCCEEEEEEcCc--cc--EEEEcCCCeEEEEEEeC
Confidence 689999999999996542221 11 12233468888888753
No 10
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}
Probab=8.55 E-value=2e+02 Score=22.28 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=26.6
Q ss_pred CcccCcEecCCCcEEEEeecCCCcEEEeeccCCCcEEEEEEEE
Q 002296 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826 (940)
Q Consensus 784 i~~~g~~v~~gd~l~~~~~~~~~~~~~~~~~~~e~g~V~~v~~ 826 (940)
++++|+.|++||+|+-.-+.|.. ........|+|.++.+
T Consensus 22 ~v~~Gd~V~~gd~l~~vEt~K~~----~ei~a~~~G~v~~i~v 60 (79)
T d1ghja_ 22 HKKPGEAVKRDELIVDIETDKVV----MEVLAEADGVIAEIVK 60 (79)
T ss_dssp SSCTTSEECSSCEEEEEECSSCE----EEEECSSCEEEEEESS
T ss_pred EcCCCCEEeeCccEEEEEcCceE----EEEEeceeEEEEEEEc
Confidence 57899999999999865443322 2233457888877665
Done!